2025-01-31 09:31:51,864 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:51,868 INFO Extracting cutcounts from bam file 2025-01-31 09:34:20,929 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:34:20,971 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:34:20,973 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:34:20,973 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:34:20,974 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:34:20,975 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:34:20,988 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:34:24,763 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:34:25,253 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:34:25,398 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:34:25,411 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:34:25,419 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:34:25,457 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:34:26,306 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:34:26,445 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:34:26,782 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:34:26,886 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:34:26,892 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:34:26,900 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:34:27,932 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:34:27,955 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:34:27,980 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:34:28,782 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:34:28,782 INFO Total cutcounts = 24004244 2025-01-31 09:34:28,787 INFO Smoothing signal using MODWT 2025-01-31 09:34:28,792 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:34:28,825 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:28,828 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:28,829 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:28,830 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:28,830 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:28,830 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:59,290 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:01,577 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:03,483 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:09,805 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:28,579 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:55,349 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:00,170 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:10,393 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:16,631 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:17,305 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:18,430 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:56,659 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:51,128 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:57,204 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:00,212 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:42:24,195 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:42:24,195 INFO Estimating parameters of background model 2025-01-31 09:42:24,195 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:42:29,055 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:42:29,096 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:42:29,334 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:42:29,912 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:42:30,077 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:42:30,704 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:42:45,777 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:42:45,779 DEBUG chr4: Signal quantile: 0.991. signal threshold: 14. Best RMSEA: 0.016 2025-01-31 09:42:45,827 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:42:45,829 DEBUG chrX: Signal quantile: 0.995. signal threshold: 10. Best RMSEA: 0.022 2025-01-31 09:42:45,960 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:42:45,962 DEBUG chr3: Signal quantile: 0.993. signal threshold: 14. Best RMSEA: 0.015 2025-01-31 09:42:46,073 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:42:46,075 DEBUG chr5: Signal quantile: 0.991. signal threshold: 14. Best RMSEA: 0.014 2025-01-31 09:42:48,229 DEBUG chr4 total SNP count: 262902 2025-01-31 09:42:48,229 DEBUG chr4 length: 156508116 2025-01-31 09:42:48,229 DEBUG ----------------------------------------- 2025-01-31 09:42:48,229 INFO Processing SNPs in chr4 2025-01-31 09:42:48,545 DEBUG chr5 total SNP count: 259029 2025-01-31 09:42:48,546 DEBUG chr5 length: 151834684 2025-01-31 09:42:48,546 DEBUG ----------------------------------------- 2025-01-31 09:42:48,546 INFO Processing SNPs in chr5 2025-01-31 09:42:48,546 DEBUG chrX total SNP count: 247997 2025-01-31 09:42:48,547 DEBUG chrX length: 171031299 2025-01-31 09:42:48,547 DEBUG ----------------------------------------- 2025-01-31 09:42:48,547 INFO Processing SNPs in chrX 2025-01-31 09:42:48,607 DEBUG chr3 total SNP count: 273367 2025-01-31 09:42:48,607 DEBUG chr3 length: 160039680 2025-01-31 09:42:48,607 DEBUG ----------------------------------------- 2025-01-31 09:42:48,607 INFO Processing SNPs in chr3 2025-01-31 09:42:48,623 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 66517), (66517, 262902)] 2025-01-31 09:42:48,749 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:48,795 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 259029)] 2025-01-31 09:42:48,872 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 273367)] 2025-01-31 09:42:48,918 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 33002), (33002, 33003), (33003, 33058), (33058, 176611), (176611, 176615), (176615, 247997)] 2025-01-31 09:42:48,966 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:49,029 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:49,052 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:49,982 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:42:49,984 DEBUG chr2: Signal quantile: 0.990. signal threshold: 13. Best RMSEA: 0.015 2025-01-31 09:42:51,775 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:42:51,777 DEBUG chr1: Signal quantile: 0.992. signal threshold: 15. Best RMSEA: 0.014 2025-01-31 09:42:52,917 DEBUG chr2 total SNP count: 316655 2025-01-31 09:42:52,918 DEBUG chr2 length: 182113224 2025-01-31 09:42:52,918 DEBUG ----------------------------------------- 2025-01-31 09:42:52,918 INFO Processing SNPs in chr2 2025-01-31 09:42:53,172 DEBUG Segmenting atomic regions: 2025-01-31 09:42:53,275 DEBUG Processing 1/109 atomic regions from SNP 0 to 601 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:53,390 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 308777), (308777, 316655)] 2025-01-31 09:42:53,595 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:54,778 DEBUG Processing 2/109 atomic regions from SNP 301 to 901 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:54,890 DEBUG chr1 total SNP count: 341771 2025-01-31 09:42:54,890 DEBUG chr1 length: 195471971 2025-01-31 09:42:54,890 DEBUG ----------------------------------------- 2025-01-31 09:42:54,890 INFO Processing SNPs in chr1 2025-01-31 09:42:54,984 DEBUG Processing 3/109 atomic regions from SNP 601 to 1201 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,221 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 341771)] 2025-01-31 09:42:55,228 DEBUG Processing 4/109 atomic regions from SNP 901 to 1501 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,426 DEBUG Processing 5/109 atomic regions from SNP 1201 to 1801 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,446 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:55,623 DEBUG Processing 6/109 atomic regions from SNP 1501 to 2101 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,821 DEBUG Processing 7/109 atomic regions from SNP 1801 to 2401 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,017 DEBUG Processing 8/109 atomic regions from SNP 2101 to 2701 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,215 DEBUG Processing 9/109 atomic regions from SNP 2401 to 3001 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,413 DEBUG Processing 10/109 atomic regions from SNP 2701 to 3301 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,616 DEBUG Processing 11/109 atomic regions from SNP 3001 to 3601 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,864 DEBUG Processing 12/109 atomic regions from SNP 3301 to 3901 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,085 DEBUG Processing 13/109 atomic regions from SNP 3601 to 4201 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,153 DEBUG Segmenting atomic regions: 2025-01-31 09:42:57,264 DEBUG Processing 1/220 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,314 DEBUG Processing 14/109 atomic regions from SNP 3901 to 4501 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,564 DEBUG Processing 15/109 atomic regions from SNP 4201 to 4801 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,815 DEBUG Processing 16/109 atomic regions from SNP 4501 to 5101 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,967 DEBUG Processing 2/220 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,055 DEBUG Processing 17/109 atomic regions from SNP 4801 to 5401 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,176 DEBUG Processing 3/220 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,289 DEBUG Processing 18/109 atomic regions from SNP 5101 to 5701 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,386 DEBUG Processing 4/220 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,508 DEBUG Processing 19/109 atomic regions from SNP 5401 to 6001 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,608 DEBUG Processing 5/220 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,707 DEBUG Processing 20/109 atomic regions from SNP 5701 to 6301 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,812 DEBUG Processing 6/220 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,907 DEBUG Processing 21/109 atomic regions from SNP 6001 to 6601 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:59,014 DEBUG Processing 7/220 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,105 DEBUG Processing 22/109 atomic regions from SNP 6301 to 6901 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:59,215 DEBUG Processing 8/220 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,324 DEBUG Processing 23/109 atomic regions from SNP 6601 to 7201 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:59,423 DEBUG Processing 9/220 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,525 DEBUG Processing 24/109 atomic regions from SNP 6901 to 7501 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:59,632 DEBUG Processing 10/220 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,727 DEBUG Processing 25/109 atomic regions from SNP 7201 to 7801 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:59,838 DEBUG Processing 11/220 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,925 DEBUG Processing 26/109 atomic regions from SNP 7501 to 8101 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,043 DEBUG Processing 12/220 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,124 DEBUG Processing 27/109 atomic regions from SNP 7801 to 8401 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,250 DEBUG Processing 13/220 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,325 DEBUG Processing 28/109 atomic regions from SNP 8101 to 8701 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,465 DEBUG Processing 14/220 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,531 DEBUG Processing 29/109 atomic regions from SNP 8401 to 9001 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,675 DEBUG Processing 15/220 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,735 DEBUG Processing 30/109 atomic regions from SNP 8701 to 9301 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,886 DEBUG Processing 16/220 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,954 DEBUG Processing 31/109 atomic regions from SNP 9001 to 9601 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,092 DEBUG Processing 17/220 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,164 DEBUG Processing 32/109 atomic regions from SNP 9301 to 9901 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,309 DEBUG Processing 18/220 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,370 DEBUG Processing 33/109 atomic regions from SNP 9601 to 10201 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,545 DEBUG Processing 19/220 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,576 DEBUG Processing 34/109 atomic regions from SNP 9901 to 10501 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,760 DEBUG Processing 20/220 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,788 DEBUG Processing 35/109 atomic regions from SNP 10201 to 10801 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,969 DEBUG Processing 21/220 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,000 DEBUG Processing 36/109 atomic regions from SNP 10501 to 11101 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:02,185 DEBUG Processing 22/220 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,219 DEBUG Processing 37/109 atomic regions from SNP 10801 to 11401 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:02,401 DEBUG Processing 23/220 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,443 DEBUG Processing 38/109 atomic regions from SNP 11101 to 11701 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:02,614 DEBUG Processing 24/220 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,679 DEBUG Processing 39/109 atomic regions from SNP 11401 to 12001 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:02,825 DEBUG Processing 25/220 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,913 DEBUG Processing 40/109 atomic regions from SNP 11701 to 12301 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,031 DEBUG Processing 26/220 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,131 DEBUG Processing 41/109 atomic regions from SNP 12001 to 12601 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,237 DEBUG Processing 27/220 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,344 DEBUG Processing 42/109 atomic regions from SNP 12301 to 12901 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,442 DEBUG Processing 28/220 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,556 DEBUG Processing 43/109 atomic regions from SNP 12601 to 13201 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,648 DEBUG Processing 29/220 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,776 DEBUG Processing 44/109 atomic regions from SNP 12901 to 13501 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,854 DEBUG Processing 30/220 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,999 DEBUG Processing 45/109 atomic regions from SNP 13201 to 13801 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:04,075 DEBUG Processing 31/220 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,234 DEBUG Processing 46/109 atomic regions from SNP 13501 to 14101 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:04,305 DEBUG Processing 32/220 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,460 DEBUG Processing 47/109 atomic regions from SNP 13801 to 14401 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:04,512 DEBUG Processing 33/220 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,670 DEBUG Processing 48/109 atomic regions from SNP 14101 to 14701 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:04,719 DEBUG Processing 34/220 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,874 DEBUG Processing 49/109 atomic regions from SNP 14401 to 15001 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:04,925 DEBUG Processing 35/220 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,078 DEBUG Processing 50/109 atomic regions from SNP 14701 to 15301 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,132 DEBUG Processing 36/220 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,281 DEBUG Processing 51/109 atomic regions from SNP 15001 to 15601 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,340 DEBUG Processing 37/220 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,485 DEBUG Processing 52/109 atomic regions from SNP 15301 to 15901 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,552 DEBUG Processing 38/220 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,690 DEBUG Processing 53/109 atomic regions from SNP 15601 to 16201 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,764 DEBUG Processing 39/220 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,892 DEBUG Processing 54/109 atomic regions from SNP 15901 to 16501 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,972 DEBUG Processing 40/220 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,093 DEBUG Processing 55/109 atomic regions from SNP 16201 to 16801 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,176 DEBUG Processing 41/220 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,293 DEBUG Processing 56/109 atomic regions from SNP 16501 to 17101 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,382 DEBUG Processing 42/220 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,493 DEBUG Processing 57/109 atomic regions from SNP 16801 to 17401 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,588 DEBUG Processing 43/220 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,693 DEBUG Processing 58/109 atomic regions from SNP 17101 to 17701 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,800 DEBUG Processing 44/220 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,897 DEBUG Processing 59/109 atomic regions from SNP 17401 to 18001 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:07,033 DEBUG Processing 45/220 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,100 DEBUG Processing 60/109 atomic regions from SNP 17701 to 18301 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:07,269 DEBUG Processing 46/220 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,303 DEBUG Processing 61/109 atomic regions from SNP 18001 to 18601 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:07,492 DEBUG Processing 47/220 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,508 DEBUG Processing 62/109 atomic regions from SNP 18301 to 18901 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:07,704 DEBUG Processing 48/220 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,714 DEBUG Processing 63/109 atomic regions from SNP 18601 to 19201 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:07,915 DEBUG Processing 49/220 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,917 DEBUG Processing 64/109 atomic regions from SNP 18901 to 19501 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,122 DEBUG Processing 65/109 atomic regions from SNP 19201 to 19801 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,126 DEBUG Processing 50/220 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,327 DEBUG Processing 66/109 atomic regions from SNP 19501 to 20101 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,336 DEBUG Processing 51/220 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,532 DEBUG Processing 67/109 atomic regions from SNP 19801 to 20401 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,548 DEBUG Processing 52/220 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,738 DEBUG Processing 68/109 atomic regions from SNP 20101 to 20701 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,757 DEBUG Processing 53/220 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,941 DEBUG Processing 69/109 atomic regions from SNP 20401 to 21001 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,964 DEBUG Processing 54/220 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,142 DEBUG Processing 70/109 atomic regions from SNP 20701 to 21301 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:09,170 DEBUG Processing 55/220 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,344 DEBUG Processing 71/109 atomic regions from SNP 21001 to 21601 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:09,376 DEBUG Processing 56/220 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,547 DEBUG Processing 72/109 atomic regions from SNP 21301 to 21901 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:09,583 DEBUG Processing 57/220 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,749 DEBUG Processing 73/109 atomic regions from SNP 21601 to 22201 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:09,789 DEBUG Processing 58/220 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,949 DEBUG Processing 74/109 atomic regions from SNP 21901 to 22501 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:09,995 DEBUG Processing 59/220 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,148 DEBUG Processing 75/109 atomic regions from SNP 22201 to 22801 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,204 DEBUG Processing 60/220 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,349 DEBUG Processing 76/109 atomic regions from SNP 22501 to 23101 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,429 DEBUG Processing 61/220 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,552 DEBUG Processing 77/109 atomic regions from SNP 22801 to 23401 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,655 DEBUG Processing 62/220 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,755 DEBUG Processing 78/109 atomic regions from SNP 23101 to 23701 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,861 DEBUG Processing 63/220 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,957 DEBUG Processing 79/109 atomic regions from SNP 23401 to 24001 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:11,066 DEBUG Processing 64/220 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,156 DEBUG Processing 80/109 atomic regions from SNP 23701 to 24301 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:11,270 DEBUG Processing 65/220 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,359 DEBUG Processing 81/109 atomic regions from SNP 24001 to 24601 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:11,476 DEBUG Processing 66/220 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,565 DEBUG Processing 82/109 atomic regions from SNP 24301 to 24901 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:11,686 DEBUG Processing 67/220 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,771 DEBUG Processing 83/109 atomic regions from SNP 24601 to 25201 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:11,901 DEBUG Processing 68/220 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,980 DEBUG Processing 84/109 atomic regions from SNP 24901 to 25501 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,109 DEBUG Processing 69/220 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,184 DEBUG Processing 85/109 atomic regions from SNP 25201 to 25801 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,323 DEBUG Processing 70/220 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,402 DEBUG Processing 86/109 atomic regions from SNP 25501 to 26101 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,530 DEBUG Processing 71/220 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,618 DEBUG Processing 87/109 atomic regions from SNP 25801 to 26401 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,739 DEBUG Processing 72/220 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,845 DEBUG Processing 88/109 atomic regions from SNP 26101 to 26701 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,945 DEBUG Processing 73/220 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,069 DEBUG Processing 89/109 atomic regions from SNP 26401 to 27001 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,152 DEBUG Processing 74/220 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,277 DEBUG Processing 90/109 atomic regions from SNP 26701 to 27301 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,363 DEBUG Processing 75/220 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,483 DEBUG Processing 91/109 atomic regions from SNP 27001 to 27601 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,571 DEBUG Processing 76/220 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,686 DEBUG Processing 92/109 atomic regions from SNP 27301 to 27901 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,782 DEBUG Processing 77/220 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,886 DEBUG Processing 93/109 atomic regions from SNP 27601 to 28201 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,987 DEBUG Processing 78/220 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,085 DEBUG Processing 94/109 atomic regions from SNP 27901 to 28501 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,195 DEBUG Processing 79/220 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,284 DEBUG Processing 95/109 atomic regions from SNP 28201 to 28801 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,401 DEBUG Processing 80/220 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,484 DEBUG Processing 96/109 atomic regions from SNP 28501 to 29101 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,609 DEBUG Processing 81/220 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,685 DEBUG Processing 97/109 atomic regions from SNP 28801 to 29401 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,814 DEBUG Processing 82/220 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,887 DEBUG Processing 98/109 atomic regions from SNP 29101 to 29701 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:15,020 DEBUG Processing 83/220 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,087 DEBUG Processing 99/109 atomic regions from SNP 29401 to 30001 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:15,226 DEBUG Processing 84/220 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,289 DEBUG Processing 100/109 atomic regions from SNP 29701 to 30301 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:15,432 DEBUG Processing 85/220 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,492 DEBUG Processing 101/109 atomic regions from SNP 30001 to 30601 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:15,641 DEBUG Processing 86/220 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,695 DEBUG Processing 102/109 atomic regions from SNP 30301 to 30901 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:15,852 DEBUG Processing 87/220 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,898 DEBUG Processing 103/109 atomic regions from SNP 30601 to 31201 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:16,062 DEBUG Processing 88/220 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,101 DEBUG Processing 104/109 atomic regions from SNP 30901 to 31501 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:16,270 DEBUG Processing 89/220 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,304 DEBUG Processing 105/109 atomic regions from SNP 31201 to 31801 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:16,477 DEBUG Processing 90/220 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,505 DEBUG Processing 106/109 atomic regions from SNP 31501 to 32101 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:16,686 DEBUG Processing 91/220 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,709 DEBUG Processing 107/109 atomic regions from SNP 31801 to 32401 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:16,897 DEBUG Processing 92/220 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,914 DEBUG Processing 108/109 atomic regions from SNP 32101 to 32701 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:17,110 DEBUG Processing 93/220 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,119 DEBUG Processing 109/109 atomic regions from SNP 32401 to 33001 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:17,217 DEBUG Unique SNPs positions in subchromosome 1: 33002 2025-01-31 09:43:17,264 DEBUG Subchromosome time: 28.235728645697236, subchromosome SNPs: 33002 2025-01-31 09:43:17,299 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:17,317 DEBUG Processing 94/220 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,523 DEBUG Processing 95/220 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,727 DEBUG Processing 96/220 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,933 DEBUG Processing 97/220 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,140 DEBUG Processing 98/220 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,349 DEBUG Processing 99/220 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,557 DEBUG Processing 100/220 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,766 DEBUG Processing 101/220 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,973 DEBUG Processing 102/220 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,174 DEBUG Processing 103/220 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,381 DEBUG Processing 104/220 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,584 DEBUG Processing 105/220 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,804 DEBUG Processing 106/220 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,012 DEBUG Processing 107/220 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,227 DEBUG Processing 108/220 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,431 DEBUG Processing 109/220 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,634 DEBUG Processing 110/220 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,838 DEBUG Processing 111/220 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,044 DEBUG Processing 112/220 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,249 DEBUG Processing 113/220 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,451 DEBUG Processing 114/220 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,653 DEBUG Processing 115/220 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,853 DEBUG Segmenting atomic regions: 2025-01-31 09:43:21,858 DEBUG Processing 116/220 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,963 DEBUG Processing 1/862 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,063 DEBUG Processing 117/220 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,272 DEBUG Processing 118/220 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,481 DEBUG Processing 119/220 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,631 DEBUG Processing 2/862 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,689 DEBUG Processing 120/220 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,841 DEBUG Processing 3/862 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,895 DEBUG Processing 121/220 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,058 DEBUG Processing 4/862 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,100 DEBUG Processing 122/220 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,271 DEBUG Processing 5/862 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,304 DEBUG Processing 123/220 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,482 DEBUG Processing 6/862 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,521 DEBUG Processing 124/220 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,691 DEBUG Processing 7/862 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,729 DEBUG Processing 125/220 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,855 DEBUG Segmenting atomic regions: 2025-01-31 09:43:23,902 DEBUG Processing 8/862 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,938 DEBUG Processing 126/220 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,970 DEBUG Processing 1/910 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,115 DEBUG Processing 9/862 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,149 DEBUG Processing 127/220 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,326 DEBUG Processing 10/862 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,357 DEBUG Processing 128/220 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,541 DEBUG Processing 11/862 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,569 DEBUG Processing 129/220 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,653 DEBUG Processing 2/910 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,754 DEBUG Processing 12/862 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,785 DEBUG Processing 130/220 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,875 DEBUG Processing 3/910 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,970 DEBUG Processing 13/862 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,999 DEBUG Processing 131/220 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,092 DEBUG Processing 4/910 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,189 DEBUG Processing 14/862 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,215 DEBUG Processing 132/220 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,308 DEBUG Processing 5/910 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,399 DEBUG Processing 15/862 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,421 DEBUG Processing 133/220 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,526 DEBUG Processing 6/910 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,608 DEBUG Processing 16/862 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,629 DEBUG Processing 134/220 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,744 DEBUG Processing 7/910 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,817 DEBUG Processing 17/862 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,837 DEBUG Processing 135/220 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,962 DEBUG Processing 8/910 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,027 DEBUG Processing 18/862 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,045 DEBUG Processing 136/220 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,181 DEBUG Processing 9/910 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,237 DEBUG Processing 19/862 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,253 DEBUG Processing 137/220 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,399 DEBUG Processing 10/910 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,450 DEBUG Processing 20/862 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,460 DEBUG Processing 138/220 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,618 DEBUG Processing 11/910 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,663 DEBUG Processing 21/862 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,669 DEBUG Processing 139/220 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,838 DEBUG Processing 12/910 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,873 DEBUG Processing 22/862 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,878 DEBUG Processing 140/220 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,057 DEBUG Processing 13/910 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,085 DEBUG Processing 23/862 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,088 DEBUG Processing 141/220 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,275 DEBUG Processing 14/910 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,294 DEBUG Processing 24/862 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,295 DEBUG Processing 142/220 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,494 DEBUG Processing 15/910 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,504 DEBUG Processing 25/862 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,505 DEBUG Processing 143/220 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,713 DEBUG Processing 16/910 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,713 DEBUG Processing 144/220 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,714 DEBUG Processing 26/862 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,920 DEBUG Processing 145/220 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,924 DEBUG Processing 27/862 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,932 DEBUG Processing 17/910 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,127 DEBUG Processing 146/220 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,135 DEBUG Processing 28/862 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,150 DEBUG Processing 18/910 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,335 DEBUG Processing 147/220 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,345 DEBUG Processing 29/862 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,371 DEBUG Processing 19/910 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,540 DEBUG Processing 148/220 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,555 DEBUG Processing 30/862 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,588 DEBUG Processing 20/910 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,745 DEBUG Processing 149/220 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,766 DEBUG Processing 31/862 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,808 DEBUG Processing 21/910 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,950 DEBUG Processing 150/220 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,975 DEBUG Processing 32/862 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,027 DEBUG Processing 22/910 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,157 DEBUG Processing 151/220 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,185 DEBUG Processing 33/862 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,246 DEBUG Processing 23/910 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,363 DEBUG Processing 152/220 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,391 DEBUG Processing 34/862 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,463 DEBUG Processing 24/910 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,569 DEBUG Processing 153/220 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,598 DEBUG Processing 35/862 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,679 DEBUG Processing 25/910 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,774 DEBUG Processing 154/220 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,807 DEBUG Processing 36/862 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,895 DEBUG Processing 26/910 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,976 DEBUG Processing 155/220 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,014 DEBUG Processing 37/862 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,110 DEBUG Processing 27/910 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,180 DEBUG Processing 156/220 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,221 DEBUG Processing 38/862 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,336 DEBUG Processing 28/910 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,386 DEBUG Processing 157/220 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,429 DEBUG Processing 39/862 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,551 DEBUG Processing 29/910 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,589 DEBUG Processing 158/220 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,637 DEBUG Processing 40/862 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,769 DEBUG Processing 30/910 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,794 DEBUG Processing 159/220 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,845 DEBUG Processing 41/862 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,984 DEBUG Processing 31/910 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,999 DEBUG Processing 160/220 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,053 DEBUG Processing 42/862 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,202 DEBUG Processing 32/910 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,204 DEBUG Processing 161/220 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,262 DEBUG Processing 43/862 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,407 DEBUG Processing 162/220 atomic regions from SNP 48461 to 49062 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,420 DEBUG Processing 33/910 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,472 DEBUG Processing 44/862 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,611 DEBUG Processing 163/220 atomic regions from SNP 48762 to 49363 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,663 DEBUG Processing 34/910 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,685 DEBUG Processing 45/862 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,813 DEBUG Processing 164/220 atomic regions from SNP 49063 to 49664 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,881 DEBUG Processing 35/910 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,895 DEBUG Processing 46/862 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,015 DEBUG Processing 165/220 atomic regions from SNP 49364 to 49965 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,100 DEBUG Processing 36/910 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,105 DEBUG Processing 47/862 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,216 DEBUG Processing 166/220 atomic regions from SNP 49665 to 50266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,315 DEBUG Processing 48/862 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,318 DEBUG Processing 37/910 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,418 DEBUG Processing 167/220 atomic regions from SNP 49966 to 50567 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,524 DEBUG Processing 49/862 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,538 DEBUG Processing 38/910 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,619 DEBUG Processing 168/220 atomic regions from SNP 50267 to 50868 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,735 DEBUG Processing 50/862 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,754 DEBUG Processing 39/910 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,823 DEBUG Processing 169/220 atomic regions from SNP 50568 to 51169 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,829 DEBUG Segmenting atomic regions: 2025-01-31 09:43:32,946 DEBUG Processing 51/862 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,963 DEBUG Processing 1/1028 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,970 DEBUG Processing 40/910 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,035 DEBUG Processing 170/220 atomic regions from SNP 50869 to 51470 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,156 DEBUG Processing 52/862 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,201 DEBUG Processing 41/910 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,258 DEBUG Processing 171/220 atomic regions from SNP 51170 to 51771 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,364 DEBUG Processing 53/862 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,441 DEBUG Processing 42/910 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,491 DEBUG Processing 172/220 atomic regions from SNP 51471 to 52072 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,571 DEBUG Processing 54/862 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,660 DEBUG Processing 43/910 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,675 DEBUG Processing 2/1028 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,710 DEBUG Processing 173/220 atomic regions from SNP 51772 to 52373 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,778 DEBUG Processing 55/862 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,880 DEBUG Processing 44/910 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,914 DEBUG Processing 174/220 atomic regions from SNP 52073 to 52674 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,924 DEBUG Processing 3/1028 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,983 DEBUG Processing 56/862 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,099 DEBUG Processing 45/910 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,121 DEBUG Processing 175/220 atomic regions from SNP 52374 to 52975 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,164 DEBUG Processing 4/1028 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,193 DEBUG Processing 57/862 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,320 DEBUG Processing 46/910 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,328 DEBUG Processing 176/220 atomic regions from SNP 52675 to 53276 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,403 DEBUG Processing 58/862 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,403 DEBUG Processing 5/1028 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,533 DEBUG Processing 177/220 atomic regions from SNP 52976 to 53577 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,539 DEBUG Processing 47/910 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,615 DEBUG Processing 59/862 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,642 DEBUG Processing 6/1028 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,735 DEBUG Processing 178/220 atomic regions from SNP 53277 to 53878 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,759 DEBUG Processing 48/910 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,827 DEBUG Processing 60/862 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,878 DEBUG Processing 7/1028 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,936 DEBUG Processing 179/220 atomic regions from SNP 53578 to 54179 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,976 DEBUG Processing 49/910 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,038 DEBUG Processing 61/862 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,114 DEBUG Processing 8/1028 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,138 DEBUG Processing 180/220 atomic regions from SNP 53879 to 54480 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,195 DEBUG Processing 50/910 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,251 DEBUG Processing 62/862 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,343 DEBUG Processing 181/220 atomic regions from SNP 54180 to 54781 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,350 DEBUG Processing 9/1028 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,416 DEBUG Processing 51/910 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,463 DEBUG Processing 63/862 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,551 DEBUG Processing 182/220 atomic regions from SNP 54481 to 55082 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,586 DEBUG Processing 10/1028 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,615 DEBUG Segmenting atomic regions: 2025-01-31 09:43:35,638 DEBUG Processing 52/910 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,672 DEBUG Processing 64/862 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,720 DEBUG Processing 1/477 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:35,753 DEBUG Processing 183/220 atomic regions from SNP 54782 to 55383 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,822 DEBUG Processing 11/1028 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,869 DEBUG Processing 53/910 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,894 DEBUG Processing 65/862 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,929 DEBUG Processing 2/477 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:35,958 DEBUG Processing 184/220 atomic regions from SNP 55083 to 55684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,067 DEBUG Processing 12/1028 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,093 DEBUG Processing 54/910 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,106 DEBUG Processing 66/862 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,130 DEBUG Processing 3/477 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,161 DEBUG Processing 185/220 atomic regions from SNP 55384 to 55985 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,311 DEBUG Processing 13/1028 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,317 DEBUG Processing 55/910 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,319 DEBUG Processing 67/862 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,331 DEBUG Processing 4/477 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,367 DEBUG Processing 186/220 atomic regions from SNP 55685 to 56286 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,531 DEBUG Processing 5/477 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,534 DEBUG Processing 68/862 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,545 DEBUG Processing 56/910 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,556 DEBUG Processing 14/1028 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,575 DEBUG Processing 187/220 atomic regions from SNP 55986 to 56587 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,733 DEBUG Processing 6/477 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,747 DEBUG Processing 69/862 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,772 DEBUG Processing 57/910 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,782 DEBUG Processing 188/220 atomic regions from SNP 56287 to 56888 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,800 DEBUG Processing 15/1028 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,932 DEBUG Processing 7/477 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,960 DEBUG Processing 70/862 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,989 DEBUG Processing 189/220 atomic regions from SNP 56588 to 57189 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,997 DEBUG Processing 58/910 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,039 DEBUG Processing 16/1028 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,134 DEBUG Processing 8/477 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,172 DEBUG Processing 71/862 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,196 DEBUG Processing 190/220 atomic regions from SNP 56889 to 57490 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,222 DEBUG Processing 59/910 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,277 DEBUG Processing 17/1028 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,346 DEBUG Processing 9/477 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,382 DEBUG Processing 72/862 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,402 DEBUG Processing 191/220 atomic regions from SNP 57190 to 57791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,446 DEBUG Processing 60/910 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,515 DEBUG Processing 18/1028 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,574 DEBUG Processing 10/477 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,591 DEBUG Processing 73/862 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,609 DEBUG Processing 192/220 atomic regions from SNP 57491 to 58092 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,668 DEBUG Processing 61/910 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,760 DEBUG Processing 19/1028 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,797 DEBUG Processing 11/477 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,802 DEBUG Processing 74/862 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,816 DEBUG Processing 193/220 atomic regions from SNP 57792 to 58393 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,889 DEBUG Processing 62/910 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,013 DEBUG Processing 75/862 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,016 DEBUG Processing 20/1028 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,018 DEBUG Processing 12/477 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,024 DEBUG Processing 194/220 atomic regions from SNP 58093 to 58694 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,110 DEBUG Processing 63/910 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,224 DEBUG Processing 76/862 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,230 DEBUG Processing 13/477 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,232 DEBUG Processing 195/220 atomic regions from SNP 58394 to 58995 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,276 DEBUG Processing 21/1028 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,330 DEBUG Processing 64/910 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,432 DEBUG Processing 77/862 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,439 DEBUG Processing 196/220 atomic regions from SNP 58695 to 59296 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,443 DEBUG Processing 14/477 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,520 DEBUG Processing 22/1028 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,550 DEBUG Processing 65/910 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,642 DEBUG Processing 78/862 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,646 DEBUG Processing 197/220 atomic regions from SNP 58996 to 59597 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,649 DEBUG Processing 15/477 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,728 DEBUG Segmenting atomic regions: 2025-01-31 09:43:38,758 DEBUG Processing 23/1028 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,771 DEBUG Processing 66/910 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,849 DEBUG Processing 79/862 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,855 DEBUG Processing 198/220 atomic regions from SNP 59297 to 59898 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,856 DEBUG Processing 16/477 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,873 DEBUG Processing 1/1138 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,997 DEBUG Processing 24/1028 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,016 DEBUG Processing 67/910 atomic regions from SNP 19866 to 20466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,062 DEBUG Processing 80/862 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,065 DEBUG Processing 199/220 atomic regions from SNP 59598 to 60199 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,073 DEBUG Processing 17/477 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,234 DEBUG Processing 25/1028 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,257 DEBUG Processing 68/910 atomic regions from SNP 20166 to 20766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,272 DEBUG Processing 200/220 atomic regions from SNP 59899 to 60500 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,273 DEBUG Processing 81/862 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,298 DEBUG Processing 18/477 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,475 DEBUG Processing 26/1028 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,478 DEBUG Processing 69/910 atomic regions from SNP 20466 to 21066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,482 DEBUG Processing 201/220 atomic regions from SNP 60200 to 60801 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,486 DEBUG Processing 82/862 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,502 DEBUG Processing 19/477 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,601 DEBUG Processing 2/1138 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,692 DEBUG Processing 202/220 atomic regions from SNP 60501 to 61102 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,699 DEBUG Processing 83/862 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,703 DEBUG Processing 70/910 atomic regions from SNP 20766 to 21366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,704 DEBUG Processing 20/477 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,716 DEBUG Processing 27/1028 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,846 DEBUG Processing 3/1138 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,900 DEBUG Processing 203/220 atomic regions from SNP 60802 to 61403 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,908 DEBUG Processing 21/477 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,912 DEBUG Processing 84/862 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,926 DEBUG Processing 71/910 atomic regions from SNP 21066 to 21666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,955 DEBUG Processing 28/1028 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,096 DEBUG Processing 4/1138 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,109 DEBUG Processing 204/220 atomic regions from SNP 61103 to 61704 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,112 DEBUG Processing 22/477 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,125 DEBUG Processing 85/862 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,150 DEBUG Processing 72/910 atomic regions from SNP 21366 to 21966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,192 DEBUG Processing 29/1028 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,315 DEBUG Processing 205/220 atomic regions from SNP 61404 to 62005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,316 DEBUG Processing 23/477 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,338 DEBUG Processing 86/862 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,349 DEBUG Processing 5/1138 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,371 DEBUG Processing 73/910 atomic regions from SNP 21666 to 22266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,431 DEBUG Processing 30/1028 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,519 DEBUG Processing 24/477 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,524 DEBUG Processing 206/220 atomic regions from SNP 61705 to 62306 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,551 DEBUG Processing 87/862 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,593 DEBUG Processing 74/910 atomic regions from SNP 21966 to 22566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,601 DEBUG Processing 6/1138 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,665 DEBUG Processing 31/1028 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,722 DEBUG Processing 25/477 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,731 DEBUG Processing 207/220 atomic regions from SNP 62006 to 62607 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,760 DEBUG Processing 88/862 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,814 DEBUG Processing 75/910 atomic regions from SNP 22266 to 22866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,850 DEBUG Processing 7/1138 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,902 DEBUG Processing 32/1028 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,925 DEBUG Processing 26/477 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,939 DEBUG Processing 208/220 atomic regions from SNP 62307 to 62908 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,969 DEBUG Processing 89/862 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,048 DEBUG Processing 76/910 atomic regions from SNP 22566 to 23166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,109 DEBUG Processing 8/1138 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,138 DEBUG Processing 27/477 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:41,141 DEBUG Processing 33/1028 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,150 DEBUG Processing 209/220 atomic regions from SNP 62608 to 63209 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,181 DEBUG Processing 90/862 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,267 DEBUG Processing 77/910 atomic regions from SNP 22866 to 23466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,343 DEBUG Processing 28/477 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:41,357 DEBUG Processing 210/220 atomic regions from SNP 62909 to 63510 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,359 DEBUG Processing 9/1138 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,381 DEBUG Processing 34/1028 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,391 DEBUG Processing 91/862 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,485 DEBUG Processing 78/910 atomic regions from SNP 23166 to 23766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,547 DEBUG Processing 29/477 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:41,566 DEBUG Processing 211/220 atomic regions from SNP 63210 to 63811 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,604 DEBUG Processing 92/862 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,609 DEBUG Processing 10/1138 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,621 DEBUG Processing 35/1028 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,703 DEBUG Processing 79/910 atomic regions from SNP 23466 to 24066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,751 DEBUG Processing 30/477 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:41,788 DEBUG Processing 212/220 atomic regions from SNP 63511 to 64112 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,819 DEBUG Processing 93/862 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,856 DEBUG Processing 11/1138 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,859 DEBUG Processing 36/1028 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,924 DEBUG Processing 80/910 atomic regions from SNP 23766 to 24366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,954 DEBUG Processing 31/477 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:42,016 DEBUG Processing 213/220 atomic regions from SNP 63812 to 64413 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,049 DEBUG Processing 94/862 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,096 DEBUG Processing 37/1028 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,101 DEBUG Processing 12/1138 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,146 DEBUG Processing 81/910 atomic regions from SNP 24066 to 24666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,157 DEBUG Processing 32/477 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:42,222 DEBUG Processing 214/220 atomic regions from SNP 64113 to 64714 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,260 DEBUG Processing 95/862 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,333 DEBUG Processing 38/1028 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,344 DEBUG Processing 13/1138 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,360 DEBUG Processing 33/477 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:42,370 DEBUG Processing 82/910 atomic regions from SNP 24366 to 24966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,443 DEBUG Processing 215/220 atomic regions from SNP 64414 to 65015 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,470 DEBUG Processing 96/862 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,562 DEBUG Processing 34/477 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:42,571 DEBUG Processing 39/1028 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,591 DEBUG Processing 83/910 atomic regions from SNP 24666 to 25266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,593 DEBUG Processing 14/1138 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,675 DEBUG Processing 216/220 atomic regions from SNP 64715 to 65316 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,677 DEBUG Processing 97/862 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,764 DEBUG Processing 35/477 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:42,809 DEBUG Processing 40/1028 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,817 DEBUG Processing 84/910 atomic regions from SNP 24966 to 25566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,842 DEBUG Processing 15/1138 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,890 DEBUG Processing 98/862 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,909 DEBUG Processing 217/220 atomic regions from SNP 65016 to 65616 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,971 DEBUG Processing 36/477 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:43,043 DEBUG Processing 85/910 atomic regions from SNP 25266 to 25866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,047 DEBUG Processing 41/1028 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,095 DEBUG Processing 16/1138 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,113 DEBUG Processing 99/862 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,139 DEBUG Processing 218/220 atomic regions from SNP 65316 to 65916 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,188 DEBUG Processing 37/477 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:43,272 DEBUG Processing 86/910 atomic regions from SNP 25566 to 26166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,287 DEBUG Processing 42/1028 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,326 DEBUG Processing 100/862 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,343 DEBUG Processing 17/1138 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,360 DEBUG Processing 219/220 atomic regions from SNP 65616 to 66216 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,391 DEBUG Processing 38/477 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:43,495 DEBUG Processing 87/910 atomic regions from SNP 25866 to 26466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,525 DEBUG Processing 43/1028 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,540 DEBUG Processing 101/862 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,587 DEBUG Processing 220/220 atomic regions from SNP 65916 to 66516 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,592 DEBUG Processing 18/1138 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,593 DEBUG Processing 39/477 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:43,714 DEBUG Unique SNPs positions in subchromosome 1: 66517 2025-01-31 09:43:43,718 DEBUG Processing 88/910 atomic regions from SNP 26166 to 26766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,758 DEBUG Processing 102/862 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,764 DEBUG Processing 44/1028 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,797 DEBUG Processing 40/477 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:43,837 DEBUG Processing 19/1138 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,882 DEBUG Subchromosome time: 55.13268853910267, subchromosome SNPs: 66517 2025-01-31 09:43:43,928 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:43,938 DEBUG Processing 89/910 atomic regions from SNP 26466 to 27066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,975 DEBUG Processing 103/862 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,998 DEBUG Processing 41/477 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:44,002 DEBUG Processing 45/1028 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,082 DEBUG Processing 20/1138 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,178 DEBUG Processing 90/910 atomic regions from SNP 26766 to 27366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,185 DEBUG Processing 104/862 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,198 DEBUG Processing 42/477 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:44,240 DEBUG Processing 46/1028 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,321 DEBUG Processing 21/1138 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,396 DEBUG Processing 105/862 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,397 DEBUG Processing 43/477 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:44,403 DEBUG Processing 91/910 atomic regions from SNP 27066 to 27666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,478 DEBUG Processing 47/1028 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,565 DEBUG Processing 22/1138 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,597 DEBUG Processing 44/477 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:44,606 DEBUG Processing 106/862 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,634 DEBUG Processing 92/910 atomic regions from SNP 27366 to 27966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,714 DEBUG Processing 48/1028 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,798 DEBUG Processing 45/477 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:44,806 DEBUG Processing 23/1138 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,819 DEBUG Processing 107/862 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,880 DEBUG Processing 93/910 atomic regions from SNP 27666 to 28266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,947 DEBUG Processing 49/1028 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,000 DEBUG Processing 46/477 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:45,031 DEBUG Processing 108/862 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,051 DEBUG Processing 24/1138 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,102 DEBUG Processing 94/910 atomic regions from SNP 27966 to 28566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,180 DEBUG Processing 50/1028 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,198 DEBUG Processing 47/477 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:45,249 DEBUG Processing 109/862 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,296 DEBUG Processing 25/1138 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,333 DEBUG Processing 95/910 atomic regions from SNP 28266 to 28866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,399 DEBUG Processing 48/477 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:45,416 DEBUG Processing 51/1028 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,470 DEBUG Processing 110/862 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,543 DEBUG Processing 26/1138 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,558 DEBUG Processing 96/910 atomic regions from SNP 28566 to 29166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,598 DEBUG Processing 49/477 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:45,657 DEBUG Processing 52/1028 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,698 DEBUG Processing 111/862 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,776 DEBUG Processing 97/910 atomic regions from SNP 28866 to 29466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,789 DEBUG Processing 27/1138 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,796 DEBUG Processing 50/477 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:45,889 DEBUG Processing 53/1028 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,909 DEBUG Processing 112/862 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,996 DEBUG Processing 51/477 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:45,997 DEBUG Processing 98/910 atomic regions from SNP 29166 to 29766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,039 DEBUG Processing 28/1138 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,119 DEBUG Processing 113/862 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,123 DEBUG Processing 54/1028 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,196 DEBUG Processing 52/477 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:46,217 DEBUG Processing 99/910 atomic regions from SNP 29466 to 30066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,286 DEBUG Processing 29/1138 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,362 DEBUG Processing 55/1028 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,363 DEBUG Processing 114/862 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,399 DEBUG Processing 53/477 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:46,439 DEBUG Processing 100/910 atomic regions from SNP 29766 to 30366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,536 DEBUG Processing 30/1138 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,596 DEBUG Processing 56/1028 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,599 DEBUG Processing 54/477 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:46,610 DEBUG Processing 115/862 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,661 DEBUG Processing 101/910 atomic regions from SNP 30066 to 30666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,782 DEBUG Processing 31/1138 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,798 DEBUG Processing 55/477 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:46,835 DEBUG Processing 57/1028 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,853 DEBUG Processing 116/862 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,882 DEBUG Processing 102/910 atomic regions from SNP 30366 to 30966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,996 DEBUG Processing 56/477 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:47,031 DEBUG Processing 32/1138 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,073 DEBUG Processing 58/1028 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,094 DEBUG Processing 117/862 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,103 DEBUG Processing 103/910 atomic regions from SNP 30666 to 31266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,195 DEBUG Processing 57/477 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:47,280 DEBUG Processing 33/1138 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,313 DEBUG Processing 59/1028 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,326 DEBUG Processing 104/910 atomic regions from SNP 30966 to 31566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,338 DEBUG Processing 118/862 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,391 DEBUG Processing 58/477 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:47,533 DEBUG Processing 34/1138 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,548 DEBUG Processing 105/910 atomic regions from SNP 31266 to 31866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,553 DEBUG Processing 60/1028 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,566 DEBUG Processing 119/862 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,589 DEBUG Processing 59/477 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:47,775 DEBUG Processing 106/910 atomic regions from SNP 31566 to 32166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,779 DEBUG Processing 120/862 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,787 DEBUG Processing 35/1138 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,790 DEBUG Processing 60/477 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:47,793 DEBUG Processing 61/1028 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,993 DEBUG Processing 61/477 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:47,999 DEBUG Processing 107/910 atomic regions from SNP 31866 to 32466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,012 DEBUG Processing 121/862 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,033 DEBUG Processing 62/1028 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,040 DEBUG Processing 36/1138 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,191 DEBUG Processing 62/477 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:48,225 DEBUG Processing 108/910 atomic regions from SNP 32166 to 32766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,232 DEBUG Processing 122/862 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,270 DEBUG Processing 63/1028 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,285 DEBUG Processing 37/1138 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,388 DEBUG Processing 63/477 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:48,443 DEBUG Processing 123/862 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,444 DEBUG Processing 109/910 atomic regions from SNP 32466 to 33066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,507 DEBUG Processing 64/1028 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,535 DEBUG Processing 38/1138 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,584 DEBUG Processing 64/477 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:48,653 DEBUG Processing 124/862 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,663 DEBUG Processing 110/910 atomic regions from SNP 32766 to 33366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,742 DEBUG Processing 65/1028 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,785 DEBUG Processing 65/477 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:48,801 DEBUG Processing 39/1138 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,862 DEBUG Processing 125/862 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,880 DEBUG Processing 111/910 atomic regions from SNP 33066 to 33666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,977 DEBUG Processing 66/1028 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,982 DEBUG Processing 66/477 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:49,053 DEBUG Processing 40/1138 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,070 DEBUG Processing 126/862 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,097 DEBUG Processing 112/910 atomic regions from SNP 33366 to 33966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,180 DEBUG Processing 67/477 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:49,223 DEBUG Processing 67/1028 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,279 DEBUG Processing 127/862 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,296 DEBUG Processing 41/1138 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,313 DEBUG Processing 113/910 atomic regions from SNP 33666 to 34266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,378 DEBUG Processing 68/477 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:49,457 DEBUG Processing 68/1028 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,490 DEBUG Processing 128/862 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,532 DEBUG Processing 114/910 atomic regions from SNP 33966 to 34566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,540 DEBUG Processing 42/1138 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,576 DEBUG Processing 69/477 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:49,692 DEBUG Processing 69/1028 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,700 DEBUG Processing 129/862 atomic regions from SNP 38528 to 39128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,752 DEBUG Processing 115/910 atomic regions from SNP 34266 to 34866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,782 DEBUG Processing 70/477 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:49,782 DEBUG Processing 43/1138 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,908 DEBUG Processing 130/862 atomic regions from SNP 38828 to 39428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,929 DEBUG Processing 70/1028 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,971 DEBUG Processing 116/910 atomic regions from SNP 34566 to 35166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,990 DEBUG Processing 71/477 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:50,026 DEBUG Processing 44/1138 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,117 DEBUG Processing 131/862 atomic regions from SNP 39128 to 39728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,165 DEBUG Processing 71/1028 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,188 DEBUG Processing 117/910 atomic regions from SNP 34866 to 35466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,212 DEBUG Processing 72/477 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:50,270 DEBUG Processing 45/1138 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,325 DEBUG Processing 132/862 atomic regions from SNP 39428 to 40028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,400 DEBUG Processing 72/1028 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,407 DEBUG Processing 118/910 atomic regions from SNP 35166 to 35766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,427 DEBUG Processing 73/477 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:50,514 DEBUG Processing 46/1138 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,533 DEBUG Processing 133/862 atomic regions from SNP 39728 to 40328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,626 DEBUG Processing 119/910 atomic regions from SNP 35466 to 36066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,630 DEBUG Processing 74/477 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:50,636 DEBUG Processing 73/1028 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,741 DEBUG Processing 134/862 atomic regions from SNP 40028 to 40628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,760 DEBUG Processing 47/1138 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,827 DEBUG Processing 75/477 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:50,846 DEBUG Processing 120/910 atomic regions from SNP 35766 to 36366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,871 DEBUG Processing 74/1028 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,950 DEBUG Processing 135/862 atomic regions from SNP 40328 to 40928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,004 DEBUG Processing 48/1138 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,024 DEBUG Processing 76/477 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:51,064 DEBUG Processing 121/910 atomic regions from SNP 36066 to 36666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,106 DEBUG Processing 75/1028 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,168 DEBUG Processing 136/862 atomic regions from SNP 40628 to 41228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,222 DEBUG Processing 77/477 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:51,249 DEBUG Processing 49/1138 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,282 DEBUG Processing 122/910 atomic regions from SNP 36366 to 36966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,342 DEBUG Processing 76/1028 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,376 DEBUG Processing 137/862 atomic regions from SNP 40928 to 41528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,422 DEBUG Processing 78/477 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:51,495 DEBUG Processing 50/1138 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,500 DEBUG Processing 123/910 atomic regions from SNP 36666 to 37266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,580 DEBUG Processing 77/1028 atomic regions from SNP 22876 to 23476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,584 DEBUG Processing 138/862 atomic regions from SNP 41228 to 41828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,622 DEBUG Processing 79/477 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:51,726 DEBUG Processing 124/910 atomic regions from SNP 36966 to 37566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,747 DEBUG Processing 51/1138 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,800 DEBUG Processing 139/862 atomic regions from SNP 41528 to 42128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,817 DEBUG Processing 78/1028 atomic regions from SNP 23176 to 23776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,821 DEBUG Processing 80/477 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:51,945 DEBUG Processing 125/910 atomic regions from SNP 37266 to 37866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,994 DEBUG Processing 52/1138 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,011 DEBUG Processing 140/862 atomic regions from SNP 41828 to 42428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,020 DEBUG Processing 81/477 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:52,050 DEBUG Processing 79/1028 atomic regions from SNP 23476 to 24076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,163 DEBUG Processing 126/910 atomic regions from SNP 37566 to 38166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,219 DEBUG Processing 82/477 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:52,224 DEBUG Processing 141/862 atomic regions from SNP 42128 to 42728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,242 DEBUG Processing 53/1138 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,283 DEBUG Processing 80/1028 atomic regions from SNP 23776 to 24376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,380 DEBUG Processing 127/910 atomic regions from SNP 37866 to 38466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,417 DEBUG Processing 83/477 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:52,436 DEBUG Processing 142/862 atomic regions from SNP 42428 to 43028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,490 DEBUG Processing 54/1138 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,518 DEBUG Processing 81/1028 atomic regions from SNP 24076 to 24676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,597 DEBUG Processing 128/910 atomic regions from SNP 38166 to 38766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,635 DEBUG Processing 84/477 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:52,647 DEBUG Processing 143/862 atomic regions from SNP 42728 to 43328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,733 DEBUG Processing 55/1138 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,751 DEBUG Processing 82/1028 atomic regions from SNP 24376 to 24976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,814 DEBUG Processing 129/910 atomic regions from SNP 38466 to 39066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,852 DEBUG Processing 85/477 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:52,863 DEBUG Processing 144/862 atomic regions from SNP 43028 to 43628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,977 DEBUG Processing 56/1138 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,984 DEBUG Processing 83/1028 atomic regions from SNP 24676 to 25276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,034 DEBUG Processing 130/910 atomic regions from SNP 38766 to 39366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,050 DEBUG Processing 86/477 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:53,072 DEBUG Processing 145/862 atomic regions from SNP 43328 to 43928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,219 DEBUG Processing 84/1028 atomic regions from SNP 24976 to 25576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,220 DEBUG Processing 57/1138 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,253 DEBUG Processing 87/477 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:53,254 DEBUG Processing 131/910 atomic regions from SNP 39066 to 39666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,283 DEBUG Processing 146/862 atomic regions from SNP 43628 to 44228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,455 DEBUG Processing 85/1028 atomic regions from SNP 25276 to 25876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,457 DEBUG Processing 88/477 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:53,463 DEBUG Processing 58/1138 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,477 DEBUG Processing 132/910 atomic regions from SNP 39366 to 39966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,496 DEBUG Processing 147/862 atomic regions from SNP 43928 to 44528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,658 DEBUG Processing 89/477 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:53,693 DEBUG Processing 86/1028 atomic regions from SNP 25576 to 26176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,698 DEBUG Processing 133/910 atomic regions from SNP 39666 to 40266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,716 DEBUG Processing 148/862 atomic regions from SNP 44228 to 44828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,723 DEBUG Processing 59/1138 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,860 DEBUG Processing 90/477 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:53,920 DEBUG Processing 134/910 atomic regions from SNP 39966 to 40566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,930 DEBUG Processing 87/1028 atomic regions from SNP 25876 to 26476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,944 DEBUG Processing 149/862 atomic regions from SNP 44528 to 45128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,974 DEBUG Processing 60/1138 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,059 DEBUG Processing 91/477 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:54,141 DEBUG Processing 135/910 atomic regions from SNP 40266 to 40866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,167 DEBUG Processing 88/1028 atomic regions from SNP 26176 to 26776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,178 DEBUG Processing 150/862 atomic regions from SNP 44828 to 45428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,219 DEBUG Processing 61/1138 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,258 DEBUG Processing 92/477 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:54,361 DEBUG Processing 136/910 atomic regions from SNP 40566 to 41166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,419 DEBUG Processing 151/862 atomic regions from SNP 45128 to 45728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,428 DEBUG Processing 89/1028 atomic regions from SNP 26476 to 27076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,462 DEBUG Processing 93/477 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:54,463 DEBUG Processing 62/1138 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,580 DEBUG Processing 137/910 atomic regions from SNP 40866 to 41466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,659 DEBUG Processing 152/862 atomic regions from SNP 45428 to 46028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,673 DEBUG Processing 94/477 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:54,673 DEBUG Processing 90/1028 atomic regions from SNP 26776 to 27376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,709 DEBUG Processing 63/1138 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,798 DEBUG Processing 138/910 atomic regions from SNP 41166 to 41766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,877 DEBUG Processing 95/477 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:54,905 DEBUG Processing 153/862 atomic regions from SNP 45728 to 46328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,909 DEBUG Processing 91/1028 atomic regions from SNP 27076 to 27676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,952 DEBUG Processing 64/1138 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,016 DEBUG Processing 139/910 atomic regions from SNP 41466 to 42066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,083 DEBUG Processing 96/477 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,146 DEBUG Processing 92/1028 atomic regions from SNP 27376 to 27976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,151 DEBUG Processing 154/862 atomic regions from SNP 46028 to 46628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,196 DEBUG Processing 65/1138 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,237 DEBUG Processing 140/910 atomic regions from SNP 41766 to 42366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,287 DEBUG Processing 97/477 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,383 DEBUG Processing 155/862 atomic regions from SNP 46328 to 46928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,407 DEBUG Processing 93/1028 atomic regions from SNP 27676 to 28276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,441 DEBUG Processing 66/1138 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,457 DEBUG Processing 141/910 atomic regions from SNP 42066 to 42666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,495 DEBUG Processing 98/477 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,594 DEBUG Processing 156/862 atomic regions from SNP 46628 to 47228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,658 DEBUG Processing 94/1028 atomic regions from SNP 27976 to 28576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,680 DEBUG Processing 142/910 atomic regions from SNP 42366 to 42966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,688 DEBUG Processing 67/1138 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,710 DEBUG Processing 99/477 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,805 DEBUG Processing 157/862 atomic regions from SNP 46928 to 47528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,904 DEBUG Processing 143/910 atomic regions from SNP 42666 to 43266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,913 DEBUG Processing 95/1028 atomic regions from SNP 28276 to 28876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,919 DEBUG Processing 100/477 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,937 DEBUG Processing 68/1138 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,010 DEBUG Processing 158/862 atomic regions from SNP 47228 to 47828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,126 DEBUG Processing 144/910 atomic regions from SNP 42966 to 43566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,134 DEBUG Processing 101/477 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,152 DEBUG Processing 96/1028 atomic regions from SNP 28576 to 29176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,185 DEBUG Processing 69/1138 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,217 DEBUG Processing 159/862 atomic regions from SNP 47528 to 48128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,340 DEBUG Processing 102/477 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,369 DEBUG Processing 145/910 atomic regions from SNP 43266 to 43866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,392 DEBUG Processing 97/1028 atomic regions from SNP 28876 to 29476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,434 DEBUG Processing 70/1138 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,444 DEBUG Processing 160/862 atomic regions from SNP 47828 to 48428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,542 DEBUG Processing 103/477 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,603 DEBUG Processing 146/910 atomic regions from SNP 43566 to 44166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,630 DEBUG Processing 98/1028 atomic regions from SNP 29176 to 29776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,655 DEBUG Processing 161/862 atomic regions from SNP 48128 to 48728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,682 DEBUG Processing 71/1138 atomic regions from SNP 21070 to 21670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,742 DEBUG Processing 104/477 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,826 DEBUG Processing 147/910 atomic regions from SNP 43866 to 44466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,867 DEBUG Processing 162/862 atomic regions from SNP 48428 to 49028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,869 DEBUG Processing 99/1028 atomic regions from SNP 29476 to 30076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,928 DEBUG Processing 72/1138 atomic regions from SNP 21370 to 21970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,942 DEBUG Processing 105/477 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,048 DEBUG Processing 148/910 atomic regions from SNP 44166 to 44766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,081 DEBUG Processing 163/862 atomic regions from SNP 48728 to 49328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,106 DEBUG Processing 100/1028 atomic regions from SNP 29776 to 30376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,142 DEBUG Processing 106/477 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,172 DEBUG Processing 73/1138 atomic regions from SNP 21670 to 22270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,269 DEBUG Processing 149/910 atomic regions from SNP 44466 to 45066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,307 DEBUG Processing 164/862 atomic regions from SNP 49028 to 49628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,342 DEBUG Processing 101/1028 atomic regions from SNP 30076 to 30676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,343 DEBUG Processing 107/477 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,415 DEBUG Processing 74/1138 atomic regions from SNP 21970 to 22570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,488 DEBUG Processing 150/910 atomic regions from SNP 44766 to 45366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,541 DEBUG Processing 165/862 atomic regions from SNP 49328 to 49928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,544 DEBUG Processing 108/477 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,579 DEBUG Processing 102/1028 atomic regions from SNP 30376 to 30976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,658 DEBUG Processing 75/1138 atomic regions from SNP 22270 to 22870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,711 DEBUG Processing 151/910 atomic regions from SNP 45066 to 45666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,746 DEBUG Processing 109/477 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,772 DEBUG Processing 166/862 atomic regions from SNP 49628 to 50228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,815 DEBUG Processing 103/1028 atomic regions from SNP 30676 to 31276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,903 DEBUG Processing 76/1138 atomic regions from SNP 22570 to 23170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,930 DEBUG Processing 152/910 atomic regions from SNP 45366 to 45966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,958 DEBUG Processing 110/477 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,001 DEBUG Processing 167/862 atomic regions from SNP 49928 to 50528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,050 DEBUG Processing 104/1028 atomic regions from SNP 30976 to 31576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,148 DEBUG Processing 77/1138 atomic regions from SNP 22870 to 23470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,151 DEBUG Processing 153/910 atomic regions from SNP 45666 to 46266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,169 DEBUG Processing 111/477 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,232 DEBUG Processing 168/862 atomic regions from SNP 50228 to 50828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,286 DEBUG Processing 105/1028 atomic regions from SNP 31276 to 31876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,375 DEBUG Processing 154/910 atomic regions from SNP 45966 to 46566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,379 DEBUG Processing 112/477 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,396 DEBUG Processing 78/1138 atomic regions from SNP 23170 to 23770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,473 DEBUG Processing 169/862 atomic regions from SNP 50528 to 51128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,531 DEBUG Processing 106/1028 atomic regions from SNP 31576 to 32176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,583 DEBUG Processing 113/477 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,608 DEBUG Processing 155/910 atomic regions from SNP 46266 to 46866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,642 DEBUG Processing 79/1138 atomic regions from SNP 23470 to 24070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,703 DEBUG Processing 170/862 atomic regions from SNP 50828 to 51428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,787 DEBUG Processing 114/477 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,790 DEBUG Processing 107/1028 atomic regions from SNP 31876 to 32476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,853 DEBUG Processing 156/910 atomic regions from SNP 46566 to 47166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,887 DEBUG Processing 80/1138 atomic regions from SNP 23770 to 24370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,915 DEBUG Processing 171/862 atomic regions from SNP 51128 to 51728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,991 DEBUG Processing 115/477 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,024 DEBUG Processing 108/1028 atomic regions from SNP 32176 to 32776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,092 DEBUG Processing 157/910 atomic regions from SNP 46866 to 47466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,125 DEBUG Processing 172/862 atomic regions from SNP 51428 to 52028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,131 DEBUG Processing 81/1138 atomic regions from SNP 24070 to 24670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,194 DEBUG Processing 116/477 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,258 DEBUG Processing 109/1028 atomic regions from SNP 32476 to 33076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,319 DEBUG Processing 158/910 atomic regions from SNP 47166 to 47766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,354 DEBUG Processing 173/862 atomic regions from SNP 51728 to 52328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,382 DEBUG Processing 82/1138 atomic regions from SNP 24370 to 24970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,398 DEBUG Processing 117/477 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,489 DEBUG Processing 110/1028 atomic regions from SNP 32776 to 33376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,560 DEBUG Processing 159/910 atomic regions from SNP 47466 to 48066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,587 DEBUG Processing 174/862 atomic regions from SNP 52028 to 52628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,602 DEBUG Processing 118/477 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,632 DEBUG Processing 83/1138 atomic regions from SNP 24670 to 25270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,721 DEBUG Processing 111/1028 atomic regions from SNP 33076 to 33676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,782 DEBUG Processing 160/910 atomic regions from SNP 47766 to 48366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,807 DEBUG Processing 119/477 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,829 DEBUG Processing 175/862 atomic regions from SNP 52328 to 52928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,883 DEBUG Processing 84/1138 atomic regions from SNP 24970 to 25570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,951 DEBUG Processing 112/1028 atomic regions from SNP 33376 to 33976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,004 DEBUG Processing 161/910 atomic regions from SNP 48066 to 48666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,009 DEBUG Processing 120/477 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,057 DEBUG Processing 176/862 atomic regions from SNP 52628 to 53228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,134 DEBUG Processing 85/1138 atomic regions from SNP 25270 to 25870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,185 DEBUG Processing 113/1028 atomic regions from SNP 33676 to 34276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,212 DEBUG Processing 121/477 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,226 DEBUG Processing 162/910 atomic regions from SNP 48366 to 48966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,288 DEBUG Processing 177/862 atomic regions from SNP 52928 to 53528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,380 DEBUG Processing 86/1138 atomic regions from SNP 25570 to 26170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,414 DEBUG Processing 122/477 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,421 DEBUG Processing 114/1028 atomic regions from SNP 33976 to 34576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,445 DEBUG Processing 163/910 atomic regions from SNP 48666 to 49266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,528 DEBUG Processing 178/862 atomic regions from SNP 53228 to 53828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,614 DEBUG Processing 123/477 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,629 DEBUG Processing 87/1138 atomic regions from SNP 25870 to 26470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,657 DEBUG Processing 115/1028 atomic regions from SNP 34276 to 34876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,667 DEBUG Processing 164/910 atomic regions from SNP 48966 to 49566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,754 DEBUG Processing 179/862 atomic regions from SNP 53528 to 54128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,814 DEBUG Processing 124/477 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,880 DEBUG Processing 88/1138 atomic regions from SNP 26170 to 26770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,889 DEBUG Processing 165/910 atomic regions from SNP 49266 to 49866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,894 DEBUG Processing 116/1028 atomic regions from SNP 34576 to 35176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,966 DEBUG Processing 180/862 atomic regions from SNP 53828 to 54428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,015 DEBUG Processing 125/477 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,112 DEBUG Processing 166/910 atomic regions from SNP 49566 to 50166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,132 DEBUG Processing 117/1028 atomic regions from SNP 34876 to 35476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,133 DEBUG Processing 89/1138 atomic regions from SNP 26470 to 27070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,190 DEBUG Processing 181/862 atomic regions from SNP 54128 to 54728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,214 DEBUG Processing 126/477 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,343 DEBUG Processing 167/910 atomic regions from SNP 49866 to 50466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,374 DEBUG Processing 118/1028 atomic regions from SNP 35176 to 35776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,387 DEBUG Processing 90/1138 atomic regions from SNP 26770 to 27370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,411 DEBUG Processing 182/862 atomic regions from SNP 54428 to 55028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,416 DEBUG Processing 127/477 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,577 DEBUG Processing 168/910 atomic regions from SNP 50166 to 50766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,614 DEBUG Processing 119/1028 atomic regions from SNP 35476 to 36076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,620 DEBUG Processing 128/477 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,626 DEBUG Processing 183/862 atomic regions from SNP 54728 to 55328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,640 DEBUG Processing 91/1138 atomic regions from SNP 27070 to 27670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,800 DEBUG Processing 169/910 atomic regions from SNP 50466 to 51066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,824 DEBUG Processing 129/477 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,845 DEBUG Processing 184/862 atomic regions from SNP 55028 to 55628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,855 DEBUG Processing 120/1028 atomic regions from SNP 35776 to 36376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,888 DEBUG Processing 92/1138 atomic regions from SNP 27370 to 27970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,022 DEBUG Processing 170/910 atomic regions from SNP 50766 to 51366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,029 DEBUG Processing 130/477 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,059 DEBUG Processing 185/862 atomic regions from SNP 55328 to 55928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,094 DEBUG Processing 121/1028 atomic regions from SNP 36076 to 36676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,133 DEBUG Processing 93/1138 atomic regions from SNP 27670 to 28270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,228 DEBUG Processing 131/477 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,242 DEBUG Processing 171/910 atomic regions from SNP 51066 to 51666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,270 DEBUG Processing 186/862 atomic regions from SNP 55628 to 56228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,331 DEBUG Processing 122/1028 atomic regions from SNP 36376 to 36976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,379 DEBUG Processing 94/1138 atomic regions from SNP 27970 to 28570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,430 DEBUG Processing 132/477 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,462 DEBUG Processing 172/910 atomic regions from SNP 51366 to 51966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,510 DEBUG Processing 187/862 atomic regions from SNP 55928 to 56528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,564 DEBUG Processing 123/1028 atomic regions from SNP 36676 to 37276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,629 DEBUG Processing 95/1138 atomic regions from SNP 28270 to 28870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,632 DEBUG Processing 133/477 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,684 DEBUG Processing 173/910 atomic regions from SNP 51666 to 52266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,759 DEBUG Processing 188/862 atomic regions from SNP 56228 to 56828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,798 DEBUG Processing 124/1028 atomic regions from SNP 36976 to 37576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,832 DEBUG Processing 134/477 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,881 DEBUG Processing 96/1138 atomic regions from SNP 28570 to 29170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,905 DEBUG Processing 174/910 atomic regions from SNP 51966 to 52566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,000 DEBUG Processing 189/862 atomic regions from SNP 56528 to 57128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,031 DEBUG Processing 135/477 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,033 DEBUG Processing 125/1028 atomic regions from SNP 37276 to 37876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,128 DEBUG Processing 97/1138 atomic regions from SNP 28870 to 29470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,147 DEBUG Processing 175/910 atomic regions from SNP 52266 to 52866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,215 DEBUG Processing 190/862 atomic regions from SNP 56828 to 57428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,228 DEBUG Processing 136/477 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,268 DEBUG Processing 126/1028 atomic regions from SNP 37576 to 38176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,373 DEBUG Processing 176/910 atomic regions from SNP 52566 to 53166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,375 DEBUG Processing 98/1138 atomic regions from SNP 29170 to 29770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,425 DEBUG Processing 191/862 atomic regions from SNP 57128 to 57728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,429 DEBUG Processing 137/477 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,516 DEBUG Processing 127/1028 atomic regions from SNP 37876 to 38476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,599 DEBUG Processing 177/910 atomic regions from SNP 52866 to 53466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,625 DEBUG Processing 99/1138 atomic regions from SNP 29470 to 30070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,632 DEBUG Processing 138/477 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,636 DEBUG Processing 192/862 atomic regions from SNP 57428 to 58028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,760 DEBUG Processing 128/1028 atomic regions from SNP 38176 to 38776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,821 DEBUG Processing 178/910 atomic regions from SNP 53166 to 53766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,835 DEBUG Processing 139/477 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,847 DEBUG Processing 193/862 atomic regions from SNP 57728 to 58328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,872 DEBUG Processing 100/1138 atomic regions from SNP 29770 to 30370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,026 DEBUG Processing 129/1028 atomic regions from SNP 38476 to 39076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,037 DEBUG Processing 140/477 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,042 DEBUG Processing 179/910 atomic regions from SNP 53466 to 54066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,060 DEBUG Processing 194/862 atomic regions from SNP 58028 to 58628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,117 DEBUG Processing 101/1138 atomic regions from SNP 30070 to 30670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,239 DEBUG Processing 141/477 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,263 DEBUG Processing 180/910 atomic regions from SNP 53766 to 54366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,272 DEBUG Processing 195/862 atomic regions from SNP 58328 to 58928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,293 DEBUG Processing 130/1028 atomic regions from SNP 38776 to 39376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,362 DEBUG Processing 102/1138 atomic regions from SNP 30370 to 30970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,442 DEBUG Processing 142/477 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,482 DEBUG Processing 196/862 atomic regions from SNP 58628 to 59228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,485 DEBUG Processing 181/910 atomic regions from SNP 54066 to 54666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,566 DEBUG Processing 131/1028 atomic regions from SNP 39076 to 39676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,606 DEBUG Processing 103/1138 atomic regions from SNP 30670 to 31270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,644 DEBUG Processing 143/477 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,695 DEBUG Processing 197/862 atomic regions from SNP 58928 to 59528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,707 DEBUG Processing 182/910 atomic regions from SNP 54366 to 54966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,842 DEBUG Processing 132/1028 atomic regions from SNP 39376 to 39976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,847 DEBUG Processing 144/477 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,851 DEBUG Processing 104/1138 atomic regions from SNP 30970 to 31570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,905 DEBUG Processing 198/862 atomic regions from SNP 59228 to 59828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,926 DEBUG Processing 183/910 atomic regions from SNP 54666 to 55266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,055 DEBUG Processing 145/477 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,099 DEBUG Processing 105/1138 atomic regions from SNP 31270 to 31870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,114 DEBUG Processing 133/1028 atomic regions from SNP 39676 to 40276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,124 DEBUG Processing 199/862 atomic regions from SNP 59528 to 60128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,145 DEBUG Processing 184/910 atomic regions from SNP 54966 to 55566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,258 DEBUG Processing 146/477 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,349 DEBUG Processing 106/1138 atomic regions from SNP 31570 to 32170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,354 DEBUG Processing 200/862 atomic regions from SNP 59828 to 60428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,363 DEBUG Processing 134/1028 atomic regions from SNP 39976 to 40576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,367 DEBUG Processing 185/910 atomic regions from SNP 55266 to 55866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,459 DEBUG Processing 147/477 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,568 DEBUG Processing 201/862 atomic regions from SNP 60128 to 60728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,593 DEBUG Processing 186/910 atomic regions from SNP 55566 to 56166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,601 DEBUG Processing 107/1138 atomic regions from SNP 31870 to 32470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,625 DEBUG Processing 135/1028 atomic regions from SNP 40276 to 40876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,662 DEBUG Processing 148/477 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,782 DEBUG Processing 202/862 atomic regions from SNP 60428 to 61028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,820 DEBUG Processing 187/910 atomic regions from SNP 55866 to 56466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,854 DEBUG Processing 108/1138 atomic regions from SNP 32170 to 32770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,867 DEBUG Processing 149/477 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,905 DEBUG Processing 136/1028 atomic regions from SNP 40576 to 41176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,994 DEBUG Processing 203/862 atomic regions from SNP 60728 to 61328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,049 DEBUG Processing 188/910 atomic regions from SNP 56166 to 56766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,073 DEBUG Processing 150/477 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,109 DEBUG Processing 109/1138 atomic regions from SNP 32470 to 33070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,174 DEBUG Processing 137/1028 atomic regions from SNP 40876 to 41476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,204 DEBUG Processing 204/862 atomic regions from SNP 61028 to 61628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,272 DEBUG Processing 189/910 atomic regions from SNP 56466 to 57066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,281 DEBUG Processing 151/477 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,360 DEBUG Processing 110/1138 atomic regions from SNP 32770 to 33370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,416 DEBUG Processing 205/862 atomic regions from SNP 61328 to 61928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,445 DEBUG Processing 138/1028 atomic regions from SNP 41176 to 41776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,487 DEBUG Processing 152/477 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,495 DEBUG Processing 190/910 atomic regions from SNP 56766 to 57366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,608 DEBUG Processing 111/1138 atomic regions from SNP 33070 to 33670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,629 DEBUG Processing 206/862 atomic regions from SNP 61628 to 62228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,692 DEBUG Processing 153/477 atomic regions from SNP 45752 to 46352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,713 DEBUG Processing 139/1028 atomic regions from SNP 41476 to 42076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,717 DEBUG Processing 191/910 atomic regions from SNP 57066 to 57666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,847 DEBUG Processing 207/862 atomic regions from SNP 61928 to 62528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,859 DEBUG Processing 112/1138 atomic regions from SNP 33370 to 33970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,895 DEBUG Processing 154/477 atomic regions from SNP 46052 to 46652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,941 DEBUG Processing 192/910 atomic regions from SNP 57366 to 57966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,962 DEBUG Processing 140/1028 atomic regions from SNP 41776 to 42376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,059 DEBUG Processing 208/862 atomic regions from SNP 62228 to 62828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,098 DEBUG Processing 155/477 atomic regions from SNP 46352 to 46952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,107 DEBUG Processing 113/1138 atomic regions from SNP 33670 to 34270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,161 DEBUG Processing 193/910 atomic regions from SNP 57666 to 58266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,224 DEBUG Processing 141/1028 atomic regions from SNP 42076 to 42676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,273 DEBUG Processing 209/862 atomic regions from SNP 62528 to 63128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,300 DEBUG Processing 156/477 atomic regions from SNP 46652 to 47252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,353 DEBUG Processing 114/1138 atomic regions from SNP 33970 to 34570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,383 DEBUG Processing 194/910 atomic regions from SNP 57966 to 58566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,486 DEBUG Processing 142/1028 atomic regions from SNP 42376 to 42976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,488 DEBUG Processing 210/862 atomic regions from SNP 62828 to 63428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,504 DEBUG Processing 157/477 atomic regions from SNP 46952 to 47552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,596 DEBUG Processing 115/1138 atomic regions from SNP 34270 to 34870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,602 DEBUG Processing 195/910 atomic regions from SNP 58266 to 58866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,702 DEBUG Processing 211/862 atomic regions from SNP 63128 to 63728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,710 DEBUG Processing 158/477 atomic regions from SNP 47252 to 47852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,740 DEBUG Processing 143/1028 atomic regions from SNP 42676 to 43276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,822 DEBUG Processing 196/910 atomic regions from SNP 58566 to 59166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,842 DEBUG Processing 116/1138 atomic regions from SNP 34570 to 35170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,915 DEBUG Processing 212/862 atomic regions from SNP 63428 to 64028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,917 DEBUG Processing 159/477 atomic regions from SNP 47552 to 48152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,002 DEBUG Processing 144/1028 atomic regions from SNP 42976 to 43576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,044 DEBUG Processing 197/910 atomic regions from SNP 58866 to 59466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,089 DEBUG Processing 117/1138 atomic regions from SNP 34870 to 35470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,124 DEBUG Processing 160/477 atomic regions from SNP 47852 to 48452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,129 DEBUG Processing 213/862 atomic regions from SNP 63728 to 64328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,267 DEBUG Processing 198/910 atomic regions from SNP 59166 to 59766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,270 DEBUG Processing 145/1028 atomic regions from SNP 43276 to 43876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,329 DEBUG Processing 161/477 atomic regions from SNP 48152 to 48752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,339 DEBUG Processing 118/1138 atomic regions from SNP 35170 to 35770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,341 DEBUG Processing 214/862 atomic regions from SNP 64028 to 64628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,489 DEBUG Processing 199/910 atomic regions from SNP 59466 to 60066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,535 DEBUG Processing 146/1028 atomic regions from SNP 43576 to 44176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,537 DEBUG Processing 162/477 atomic regions from SNP 48452 to 49052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,554 DEBUG Processing 215/862 atomic regions from SNP 64328 to 64928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,588 DEBUG Processing 119/1138 atomic regions from SNP 35470 to 36070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,714 DEBUG Processing 200/910 atomic regions from SNP 59766 to 60366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,743 DEBUG Processing 163/477 atomic regions from SNP 48752 to 49352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,767 DEBUG Processing 216/862 atomic regions from SNP 64628 to 65228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,793 DEBUG Processing 147/1028 atomic regions from SNP 43876 to 44476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,796 DEBUG Segmenting atomic regions: 2025-01-31 09:44:08,833 DEBUG Processing 120/1138 atomic regions from SNP 35770 to 36370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,908 DEBUG Processing 1/653 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,938 DEBUG Processing 201/910 atomic regions from SNP 60066 to 60666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,949 DEBUG Processing 164/477 atomic regions from SNP 49052 to 49652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,982 DEBUG Processing 217/862 atomic regions from SNP 64928 to 65528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,059 DEBUG Processing 148/1028 atomic regions from SNP 44176 to 44776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,077 DEBUG Processing 121/1138 atomic regions from SNP 36070 to 36670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,144 DEBUG Processing 2/653 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,161 DEBUG Processing 165/477 atomic regions from SNP 49352 to 49952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,164 DEBUG Processing 202/910 atomic regions from SNP 60366 to 60966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,195 DEBUG Processing 218/862 atomic regions from SNP 65228 to 65828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,317 DEBUG Processing 149/1028 atomic regions from SNP 44476 to 45076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,323 DEBUG Processing 122/1138 atomic regions from SNP 36370 to 36970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,373 DEBUG Processing 166/477 atomic regions from SNP 49652 to 50252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,378 DEBUG Processing 3/653 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,388 DEBUG Processing 203/910 atomic regions from SNP 60666 to 61266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,408 DEBUG Processing 219/862 atomic regions from SNP 65528 to 66128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,566 DEBUG Processing 150/1028 atomic regions from SNP 44776 to 45376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,571 DEBUG Processing 123/1138 atomic regions from SNP 36670 to 37270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,585 DEBUG Processing 167/477 atomic regions from SNP 49952 to 50552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,597 DEBUG Processing 4/653 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,613 DEBUG Processing 204/910 atomic regions from SNP 60966 to 61566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,621 DEBUG Processing 220/862 atomic regions from SNP 65828 to 66428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,793 DEBUG Processing 168/477 atomic regions from SNP 50252 to 50852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,822 DEBUG Processing 124/1138 atomic regions from SNP 36970 to 37570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,834 DEBUG Processing 151/1028 atomic regions from SNP 45076 to 45676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,837 DEBUG Processing 221/862 atomic regions from SNP 66128 to 66728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,839 DEBUG Processing 205/910 atomic regions from SNP 61266 to 61866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,843 DEBUG Processing 5/653 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,000 DEBUG Processing 169/477 atomic regions from SNP 50552 to 51152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,058 DEBUG Processing 222/862 atomic regions from SNP 66428 to 67028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,067 DEBUG Processing 206/910 atomic regions from SNP 61566 to 62166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,078 DEBUG Processing 125/1138 atomic regions from SNP 37270 to 37870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,099 DEBUG Processing 6/653 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,111 DEBUG Processing 152/1028 atomic regions from SNP 45376 to 45976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,205 DEBUG Processing 170/477 atomic regions from SNP 50852 to 51452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,275 DEBUG Processing 223/862 atomic regions from SNP 66728 to 67328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,294 DEBUG Processing 207/910 atomic regions from SNP 61866 to 62466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,327 DEBUG Processing 7/653 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,331 DEBUG Processing 126/1138 atomic regions from SNP 37570 to 38170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,375 DEBUG Processing 153/1028 atomic regions from SNP 45676 to 46276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,413 DEBUG Processing 171/477 atomic regions from SNP 51152 to 51752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,490 DEBUG Processing 224/862 atomic regions from SNP 67028 to 67628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,526 DEBUG Processing 208/910 atomic regions from SNP 62166 to 62766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,559 DEBUG Processing 8/653 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,584 DEBUG Processing 127/1138 atomic regions from SNP 37870 to 38470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,621 DEBUG Processing 172/477 atomic regions from SNP 51452 to 52052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,633 DEBUG Processing 154/1028 atomic regions from SNP 45976 to 46576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,702 DEBUG Processing 225/862 atomic regions from SNP 67328 to 67928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,748 DEBUG Processing 209/910 atomic regions from SNP 62466 to 63066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,795 DEBUG Processing 9/653 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,833 DEBUG Processing 173/477 atomic regions from SNP 51752 to 52352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,835 DEBUG Processing 128/1138 atomic regions from SNP 38170 to 38770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,886 DEBUG Processing 155/1028 atomic regions from SNP 46276 to 46876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,913 DEBUG Processing 226/862 atomic regions from SNP 67628 to 68228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,970 DEBUG Processing 210/910 atomic regions from SNP 62766 to 63366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,023 DEBUG Processing 10/653 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,040 DEBUG Processing 174/477 atomic regions from SNP 52052 to 52652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,084 DEBUG Processing 129/1138 atomic regions from SNP 38470 to 39070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,126 DEBUG Processing 227/862 atomic regions from SNP 67928 to 68528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,136 DEBUG Processing 156/1028 atomic regions from SNP 46576 to 47176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,194 DEBUG Processing 211/910 atomic regions from SNP 63066 to 63666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,235 DEBUG Processing 11/653 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,249 DEBUG Processing 175/477 atomic regions from SNP 52352 to 52952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,334 DEBUG Processing 130/1138 atomic regions from SNP 38770 to 39370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,340 DEBUG Processing 228/862 atomic regions from SNP 68228 to 68828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,380 DEBUG Processing 157/1028 atomic regions from SNP 46876 to 47476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,419 DEBUG Processing 212/910 atomic regions from SNP 63366 to 63966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,455 DEBUG Processing 12/653 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,460 DEBUG Processing 176/477 atomic regions from SNP 52652 to 53252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,551 DEBUG Processing 229/862 atomic regions from SNP 68528 to 69128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,586 DEBUG Processing 131/1138 atomic regions from SNP 39070 to 39670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,641 DEBUG Processing 158/1028 atomic regions from SNP 47176 to 47776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,645 DEBUG Processing 213/910 atomic regions from SNP 63666 to 64266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,674 DEBUG Processing 13/653 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,681 DEBUG Processing 177/477 atomic regions from SNP 52952 to 53552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,764 DEBUG Processing 230/862 atomic regions from SNP 68828 to 69428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,836 DEBUG Processing 132/1138 atomic regions from SNP 39370 to 39970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,869 DEBUG Processing 214/910 atomic regions from SNP 63966 to 64566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,898 DEBUG Processing 178/477 atomic regions from SNP 53252 to 53852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,909 DEBUG Processing 14/653 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,909 DEBUG Processing 159/1028 atomic regions from SNP 47476 to 48076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,971 DEBUG Processing 231/862 atomic regions from SNP 69128 to 69728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,087 DEBUG Processing 133/1138 atomic regions from SNP 39670 to 40270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,093 DEBUG Processing 215/910 atomic regions from SNP 64266 to 64866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,112 DEBUG Processing 179/477 atomic regions from SNP 53552 to 54152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,156 DEBUG Processing 15/653 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,179 DEBUG Processing 160/1028 atomic regions from SNP 47776 to 48376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,185 DEBUG Processing 232/862 atomic regions from SNP 69428 to 70028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,317 DEBUG Processing 216/910 atomic regions from SNP 64566 to 65166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,323 DEBUG Processing 180/477 atomic regions from SNP 53852 to 54452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,342 DEBUG Processing 134/1138 atomic regions from SNP 39970 to 40570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,387 DEBUG Processing 16/653 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,399 DEBUG Processing 233/862 atomic regions from SNP 69728 to 70328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,444 DEBUG Processing 161/1028 atomic regions from SNP 48076 to 48676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,533 DEBUG Processing 181/477 atomic regions from SNP 54152 to 54752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,541 DEBUG Processing 217/910 atomic regions from SNP 64866 to 65466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,598 DEBUG Processing 135/1138 atomic regions from SNP 40270 to 40870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,613 DEBUG Processing 234/862 atomic regions from SNP 70028 to 70628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,621 DEBUG Processing 17/653 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,710 DEBUG Processing 162/1028 atomic regions from SNP 48376 to 48976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,737 DEBUG Processing 182/477 atomic regions from SNP 54452 to 55052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,765 DEBUG Processing 218/910 atomic regions from SNP 65166 to 65766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,828 DEBUG Processing 235/862 atomic regions from SNP 70328 to 70928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,849 DEBUG Processing 18/653 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,852 DEBUG Processing 136/1138 atomic regions from SNP 40570 to 41170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,942 DEBUG Processing 183/477 atomic regions from SNP 54752 to 55352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,979 DEBUG Processing 163/1028 atomic regions from SNP 48676 to 49276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,988 DEBUG Processing 219/910 atomic regions from SNP 65466 to 66066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,043 DEBUG Processing 236/862 atomic regions from SNP 70628 to 71228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,080 DEBUG Processing 19/653 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,102 DEBUG Processing 137/1138 atomic regions from SNP 40870 to 41470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,149 DEBUG Processing 184/477 atomic regions from SNP 55052 to 55652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,220 DEBUG Processing 220/910 atomic regions from SNP 65766 to 66366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,242 DEBUG Processing 164/1028 atomic regions from SNP 48976 to 49576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,256 DEBUG Processing 237/862 atomic regions from SNP 70928 to 71528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,319 DEBUG Processing 20/653 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,353 DEBUG Processing 138/1138 atomic regions from SNP 41170 to 41770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,359 DEBUG Processing 185/477 atomic regions from SNP 55352 to 55952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,446 DEBUG Processing 221/910 atomic regions from SNP 66066 to 66666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,471 DEBUG Processing 238/862 atomic regions from SNP 71228 to 71828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,511 DEBUG Processing 165/1028 atomic regions from SNP 49276 to 49876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,551 DEBUG Processing 21/653 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,563 DEBUG Processing 186/477 atomic regions from SNP 55652 to 56252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,600 DEBUG Processing 139/1138 atomic regions from SNP 41470 to 42070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,670 DEBUG Processing 222/910 atomic regions from SNP 66366 to 66966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,685 DEBUG Processing 239/862 atomic regions from SNP 71528 to 72128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,769 DEBUG Processing 187/477 atomic regions from SNP 55952 to 56552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,780 DEBUG Processing 22/653 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,784 DEBUG Processing 166/1028 atomic regions from SNP 49576 to 50176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,846 DEBUG Processing 140/1138 atomic regions from SNP 41770 to 42370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,895 DEBUG Processing 223/910 atomic regions from SNP 66666 to 67266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,898 DEBUG Processing 240/862 atomic regions from SNP 71828 to 72428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,975 DEBUG Processing 188/477 atomic regions from SNP 56252 to 56852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,010 DEBUG Processing 23/653 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,048 DEBUG Processing 167/1028 atomic regions from SNP 49876 to 50476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,097 DEBUG Processing 141/1138 atomic regions from SNP 42070 to 42670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,112 DEBUG Processing 241/862 atomic regions from SNP 72128 to 72728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,119 DEBUG Processing 224/910 atomic regions from SNP 66966 to 67566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,180 DEBUG Processing 189/477 atomic regions from SNP 56552 to 57152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,255 DEBUG Processing 24/653 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,303 DEBUG Processing 168/1028 atomic regions from SNP 50176 to 50776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,330 DEBUG Processing 242/862 atomic regions from SNP 72428 to 73028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,343 DEBUG Processing 225/910 atomic regions from SNP 67266 to 67866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,349 DEBUG Processing 142/1138 atomic regions from SNP 42370 to 42970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,386 DEBUG Processing 190/477 atomic regions from SNP 56852 to 57452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,485 DEBUG Processing 25/653 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,547 DEBUG Processing 243/862 atomic regions from SNP 72728 to 73328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,562 DEBUG Processing 169/1028 atomic regions from SNP 50476 to 51076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,571 DEBUG Processing 226/910 atomic regions from SNP 67566 to 68166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,595 DEBUG Processing 191/477 atomic regions from SNP 57152 to 57752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,602 DEBUG Processing 143/1138 atomic regions from SNP 42670 to 43270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,716 DEBUG Processing 26/653 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,762 DEBUG Processing 244/862 atomic regions from SNP 73028 to 73628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,798 DEBUG Processing 227/910 atomic regions from SNP 67866 to 68466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,805 DEBUG Processing 192/477 atomic regions from SNP 57452 to 58052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,820 DEBUG Processing 170/1028 atomic regions from SNP 50776 to 51376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,850 DEBUG Processing 144/1138 atomic regions from SNP 42970 to 43570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,938 DEBUG Processing 27/653 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,978 DEBUG Processing 245/862 atomic regions from SNP 73328 to 73928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,021 DEBUG Processing 193/477 atomic regions from SNP 57752 to 58352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,031 DEBUG Processing 228/910 atomic regions from SNP 68166 to 68766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,083 DEBUG Processing 171/1028 atomic regions from SNP 51076 to 51676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,100 DEBUG Processing 145/1138 atomic regions from SNP 43270 to 43870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,150 DEBUG Processing 28/653 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,189 DEBUG Processing 246/862 atomic regions from SNP 73628 to 74228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,239 DEBUG Processing 194/477 atomic regions from SNP 58052 to 58652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,253 DEBUG Processing 229/910 atomic regions from SNP 68466 to 69066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,344 DEBUG Processing 172/1028 atomic regions from SNP 51376 to 51976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,350 DEBUG Processing 146/1138 atomic regions from SNP 43570 to 44170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,362 DEBUG Processing 29/653 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,400 DEBUG Processing 247/862 atomic regions from SNP 73928 to 74528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,460 DEBUG Processing 195/477 atomic regions from SNP 58352 to 58952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,476 DEBUG Processing 230/910 atomic regions from SNP 68766 to 69366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,575 DEBUG Processing 30/653 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,597 DEBUG Processing 147/1138 atomic regions from SNP 43870 to 44470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,599 DEBUG Processing 173/1028 atomic regions from SNP 51676 to 52276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,613 DEBUG Processing 248/862 atomic regions from SNP 74228 to 74828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,668 DEBUG Processing 196/477 atomic regions from SNP 58652 to 59252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,697 DEBUG Processing 231/910 atomic regions from SNP 69066 to 69666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,786 DEBUG Processing 31/653 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,828 DEBUG Processing 249/862 atomic regions from SNP 74528 to 75128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,847 DEBUG Processing 148/1138 atomic regions from SNP 44170 to 44770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,859 DEBUG Processing 174/1028 atomic regions from SNP 51976 to 52576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,874 DEBUG Processing 197/477 atomic regions from SNP 58952 to 59552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,917 DEBUG Processing 232/910 atomic regions from SNP 69366 to 69966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,998 DEBUG Processing 32/653 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,048 DEBUG Processing 250/862 atomic regions from SNP 74828 to 75428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,081 DEBUG Processing 198/477 atomic regions from SNP 59252 to 59852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,099 DEBUG Processing 149/1138 atomic regions from SNP 44470 to 45070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,129 DEBUG Processing 175/1028 atomic regions from SNP 52276 to 52876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,145 DEBUG Processing 233/910 atomic regions from SNP 69666 to 70266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,218 DEBUG Processing 33/653 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,261 DEBUG Processing 251/862 atomic regions from SNP 75128 to 75728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,287 DEBUG Processing 199/477 atomic regions from SNP 59552 to 60152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,351 DEBUG Processing 150/1138 atomic regions from SNP 44770 to 45370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,368 DEBUG Processing 234/910 atomic regions from SNP 69966 to 70566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,399 DEBUG Processing 176/1028 atomic regions from SNP 52576 to 53176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,453 DEBUG Processing 34/653 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,473 DEBUG Processing 252/862 atomic regions from SNP 75428 to 76028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,492 DEBUG Processing 200/477 atomic regions from SNP 59852 to 60452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,592 DEBUG Processing 235/910 atomic regions from SNP 70266 to 70866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,601 DEBUG Processing 151/1138 atomic regions from SNP 45070 to 45670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,671 DEBUG Processing 177/1028 atomic regions from SNP 52876 to 53476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,674 DEBUG Processing 35/653 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,686 DEBUG Processing 253/862 atomic regions from SNP 75728 to 76328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,701 DEBUG Processing 201/477 atomic regions from SNP 60152 to 60752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,815 DEBUG Processing 236/910 atomic regions from SNP 70566 to 71166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,849 DEBUG Processing 152/1138 atomic regions from SNP 45370 to 45970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,891 DEBUG Processing 36/653 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,901 DEBUG Processing 254/862 atomic regions from SNP 76028 to 76628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,912 DEBUG Processing 202/477 atomic regions from SNP 60452 to 61052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,944 DEBUG Processing 178/1028 atomic regions from SNP 53176 to 53776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,038 DEBUG Processing 237/910 atomic regions from SNP 70866 to 71466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,095 DEBUG Processing 153/1138 atomic regions from SNP 45670 to 46270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,107 DEBUG Processing 37/653 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,115 DEBUG Processing 255/862 atomic regions from SNP 76328 to 76928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,135 DEBUG Processing 203/477 atomic regions from SNP 60752 to 61352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,218 DEBUG Processing 179/1028 atomic regions from SNP 53476 to 54076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,260 DEBUG Processing 238/910 atomic regions from SNP 71166 to 71766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,321 DEBUG Processing 38/653 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,327 DEBUG Processing 256/862 atomic regions from SNP 76628 to 77228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,344 DEBUG Processing 154/1138 atomic regions from SNP 45970 to 46570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,360 DEBUG Processing 204/477 atomic regions from SNP 61052 to 61652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,479 DEBUG Processing 180/1028 atomic regions from SNP 53776 to 54376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,481 DEBUG Processing 239/910 atomic regions from SNP 71466 to 72066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,533 DEBUG Processing 39/653 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,542 DEBUG Processing 257/862 atomic regions from SNP 76928 to 77528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,592 DEBUG Processing 155/1138 atomic regions from SNP 46270 to 46870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,594 DEBUG Processing 205/477 atomic regions from SNP 61352 to 61952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,702 DEBUG Processing 240/910 atomic regions from SNP 71766 to 72366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,723 DEBUG Processing 181/1028 atomic regions from SNP 54076 to 54676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,744 DEBUG Processing 40/653 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,756 DEBUG Processing 258/862 atomic regions from SNP 77228 to 77828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,832 DEBUG Processing 206/477 atomic regions from SNP 61652 to 62252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,839 DEBUG Processing 156/1138 atomic regions from SNP 46570 to 47170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,925 DEBUG Processing 241/910 atomic regions from SNP 72066 to 72666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,956 DEBUG Processing 41/653 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,969 DEBUG Processing 259/862 atomic regions from SNP 77528 to 78128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,974 DEBUG Processing 182/1028 atomic regions from SNP 54376 to 54976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,071 DEBUG Processing 207/477 atomic regions from SNP 61952 to 62552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,087 DEBUG Processing 157/1138 atomic regions from SNP 46870 to 47470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,148 DEBUG Processing 242/910 atomic regions from SNP 72366 to 72966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,167 DEBUG Processing 42/653 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,187 DEBUG Processing 260/862 atomic regions from SNP 77828 to 78428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,225 DEBUG Processing 183/1028 atomic regions from SNP 54676 to 55276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,311 DEBUG Processing 208/477 atomic regions from SNP 62252 to 62852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,332 DEBUG Processing 158/1138 atomic regions from SNP 47170 to 47770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,373 DEBUG Processing 243/910 atomic regions from SNP 72666 to 73266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,385 DEBUG Processing 43/653 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,403 DEBUG Processing 261/862 atomic regions from SNP 78128 to 78728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,475 DEBUG Processing 184/1028 atomic regions from SNP 54976 to 55576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,539 DEBUG Processing 209/477 atomic regions from SNP 62552 to 63152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,579 DEBUG Processing 159/1138 atomic regions from SNP 47470 to 48070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,597 DEBUG Processing 244/910 atomic regions from SNP 72966 to 73566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,598 DEBUG Processing 44/653 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,617 DEBUG Processing 262/862 atomic regions from SNP 78428 to 79028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,736 DEBUG Processing 185/1028 atomic regions from SNP 55276 to 55876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,779 DEBUG Processing 210/477 atomic regions from SNP 62852 to 63452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,812 DEBUG Processing 45/653 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,819 DEBUG Processing 245/910 atomic regions from SNP 73266 to 73866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,829 DEBUG Processing 263/862 atomic regions from SNP 78728 to 79328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,843 DEBUG Processing 160/1138 atomic regions from SNP 47770 to 48370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,985 DEBUG Processing 186/1028 atomic regions from SNP 55576 to 56176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,997 DEBUG Processing 211/477 atomic regions from SNP 63152 to 63752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,025 DEBUG Processing 46/653 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,041 DEBUG Processing 264/862 atomic regions from SNP 79028 to 79628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,043 DEBUG Processing 246/910 atomic regions from SNP 73566 to 74166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,099 DEBUG Processing 161/1138 atomic regions from SNP 48070 to 48670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,202 DEBUG Processing 212/477 atomic regions from SNP 63452 to 64052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,225 DEBUG Processing 187/1028 atomic regions from SNP 55876 to 56476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,238 DEBUG Processing 47/653 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,253 DEBUG Processing 265/862 atomic regions from SNP 79328 to 79928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,264 DEBUG Processing 247/910 atomic regions from SNP 73866 to 74466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,346 DEBUG Processing 162/1138 atomic regions from SNP 48370 to 48970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,414 DEBUG Processing 213/477 atomic regions from SNP 63752 to 64352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,451 DEBUG Processing 48/653 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,467 DEBUG Processing 266/862 atomic regions from SNP 79628 to 80228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,468 DEBUG Processing 188/1028 atomic regions from SNP 56176 to 56776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,485 DEBUG Processing 248/910 atomic regions from SNP 74166 to 74766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,592 DEBUG Processing 163/1138 atomic regions from SNP 48670 to 49270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,626 DEBUG Processing 214/477 atomic regions from SNP 64052 to 64652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,665 DEBUG Processing 49/653 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,683 DEBUG Processing 267/862 atomic regions from SNP 79928 to 80528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,708 DEBUG Processing 249/910 atomic regions from SNP 74466 to 75066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,710 DEBUG Processing 189/1028 atomic regions from SNP 56476 to 57076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,833 DEBUG Processing 215/477 atomic regions from SNP 64352 to 64952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,843 DEBUG Processing 164/1138 atomic regions from SNP 48970 to 49570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,893 DEBUG Processing 50/653 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,903 DEBUG Processing 268/862 atomic regions from SNP 80228 to 80828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,933 DEBUG Processing 250/910 atomic regions from SNP 74766 to 75366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,957 DEBUG Processing 190/1028 atomic regions from SNP 56776 to 57376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,060 DEBUG Processing 216/477 atomic regions from SNP 64652 to 65252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,092 DEBUG Processing 165/1138 atomic regions from SNP 49270 to 49870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,107 DEBUG Processing 51/653 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,117 DEBUG Processing 269/862 atomic regions from SNP 80528 to 81128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,158 DEBUG Processing 251/910 atomic regions from SNP 75066 to 75666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,224 DEBUG Processing 191/1028 atomic regions from SNP 57076 to 57676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,286 DEBUG Processing 217/477 atomic regions from SNP 64952 to 65552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,319 DEBUG Processing 52/653 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,331 DEBUG Processing 270/862 atomic regions from SNP 80828 to 81428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,341 DEBUG Processing 166/1138 atomic regions from SNP 49570 to 50170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,380 DEBUG Processing 252/910 atomic regions from SNP 75366 to 75966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,487 DEBUG Processing 192/1028 atomic regions from SNP 57376 to 57976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,493 DEBUG Processing 218/477 atomic regions from SNP 65252 to 65852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,530 DEBUG Processing 53/653 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,547 DEBUG Processing 271/862 atomic regions from SNP 81128 to 81728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,588 DEBUG Processing 167/1138 atomic regions from SNP 49870 to 50470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,601 DEBUG Processing 253/910 atomic regions from SNP 75666 to 76266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,698 DEBUG Processing 219/477 atomic regions from SNP 65552 to 66152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,734 DEBUG Processing 193/1028 atomic regions from SNP 57676 to 58276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,742 DEBUG Processing 54/653 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,764 DEBUG Processing 272/862 atomic regions from SNP 81428 to 82028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,823 DEBUG Processing 254/910 atomic regions from SNP 75966 to 76566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,835 DEBUG Processing 168/1138 atomic regions from SNP 50170 to 50770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,903 DEBUG Processing 220/477 atomic regions from SNP 65852 to 66452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,952 DEBUG Processing 55/653 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,980 DEBUG Processing 273/862 atomic regions from SNP 81728 to 82328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,996 DEBUG Processing 194/1028 atomic regions from SNP 57976 to 58576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,048 DEBUG Processing 255/910 atomic regions from SNP 76266 to 76866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,084 DEBUG Processing 169/1138 atomic regions from SNP 50470 to 51070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,110 DEBUG Processing 221/477 atomic regions from SNP 66152 to 66752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,158 DEBUG Processing 56/653 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,196 DEBUG Processing 274/862 atomic regions from SNP 82028 to 82628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,260 DEBUG Processing 195/1028 atomic regions from SNP 58276 to 58876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,272 DEBUG Processing 256/910 atomic regions from SNP 76566 to 77166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,320 DEBUG Processing 222/477 atomic regions from SNP 66452 to 67052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,331 DEBUG Processing 170/1138 atomic regions from SNP 50770 to 51370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,367 DEBUG Processing 57/653 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,409 DEBUG Processing 275/862 atomic regions from SNP 82328 to 82928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,499 DEBUG Processing 257/910 atomic regions from SNP 76866 to 77466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,522 DEBUG Processing 196/1028 atomic regions from SNP 58576 to 59176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,531 DEBUG Processing 223/477 atomic regions from SNP 66752 to 67352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,579 DEBUG Processing 58/653 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,579 DEBUG Processing 171/1138 atomic regions from SNP 51070 to 51670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,627 DEBUG Processing 276/862 atomic regions from SNP 82628 to 83228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,724 DEBUG Processing 258/910 atomic regions from SNP 77166 to 77766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,744 DEBUG Processing 224/477 atomic regions from SNP 67052 to 67652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,775 DEBUG Processing 197/1028 atomic regions from SNP 58876 to 59476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,794 DEBUG Processing 59/653 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,828 DEBUG Processing 172/1138 atomic regions from SNP 51370 to 51970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,841 DEBUG Processing 277/862 atomic regions from SNP 82928 to 83528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,946 DEBUG Processing 259/910 atomic regions from SNP 77466 to 78066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,955 DEBUG Processing 225/477 atomic regions from SNP 67352 to 67952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,004 DEBUG Processing 60/653 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,014 DEBUG Processing 198/1028 atomic regions from SNP 59176 to 59776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,057 DEBUG Processing 278/862 atomic regions from SNP 83228 to 83828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,074 DEBUG Processing 173/1138 atomic regions from SNP 51670 to 52270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,169 DEBUG Processing 260/910 atomic regions from SNP 77766 to 78366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,183 DEBUG Processing 226/477 atomic regions from SNP 67652 to 68252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,217 DEBUG Processing 61/653 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,258 DEBUG Processing 199/1028 atomic regions from SNP 59476 to 60076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,272 DEBUG Processing 279/862 atomic regions from SNP 83528 to 84128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,318 DEBUG Processing 174/1138 atomic regions from SNP 51970 to 52570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,392 DEBUG Processing 227/477 atomic regions from SNP 67952 to 68552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,400 DEBUG Processing 261/910 atomic regions from SNP 78066 to 78666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,428 DEBUG Processing 62/653 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,487 DEBUG Processing 280/862 atomic regions from SNP 83828 to 84428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,495 DEBUG Processing 200/1028 atomic regions from SNP 59776 to 60376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,567 DEBUG Processing 175/1138 atomic regions from SNP 52270 to 52870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,602 DEBUG Processing 228/477 atomic regions from SNP 68252 to 68852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,622 DEBUG Processing 262/910 atomic regions from SNP 78366 to 78966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,639 DEBUG Processing 63/653 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,703 DEBUG Processing 281/862 atomic regions from SNP 84128 to 84728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,729 DEBUG Processing 201/1028 atomic regions from SNP 60076 to 60676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,811 DEBUG Processing 229/477 atomic regions from SNP 68552 to 69152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,837 DEBUG Processing 176/1138 atomic regions from SNP 52570 to 53170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,845 DEBUG Processing 263/910 atomic regions from SNP 78666 to 79266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,851 DEBUG Processing 64/653 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,925 DEBUG Processing 282/862 atomic regions from SNP 84428 to 85028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,963 DEBUG Processing 202/1028 atomic regions from SNP 60376 to 60976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,018 DEBUG Processing 230/477 atomic regions from SNP 68852 to 69452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,071 DEBUG Processing 264/910 atomic regions from SNP 78966 to 79566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,086 DEBUG Processing 65/653 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,107 DEBUG Processing 177/1138 atomic regions from SNP 52870 to 53470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,149 DEBUG Processing 283/862 atomic regions from SNP 84728 to 85328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,198 DEBUG Processing 203/1028 atomic regions from SNP 60676 to 61276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,226 DEBUG Processing 231/477 atomic regions from SNP 69152 to 69752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,295 DEBUG Processing 265/910 atomic regions from SNP 79266 to 79866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,313 DEBUG Processing 66/653 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,356 DEBUG Processing 178/1138 atomic regions from SNP 53170 to 53770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,369 DEBUG Processing 284/862 atomic regions from SNP 85028 to 85628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,433 DEBUG Processing 232/477 atomic regions from SNP 69452 to 70052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,433 DEBUG Processing 204/1028 atomic regions from SNP 60976 to 61576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,513 DEBUG Processing 266/910 atomic regions from SNP 79566 to 80166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,525 DEBUG Processing 67/653 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,586 DEBUG Processing 285/862 atomic regions from SNP 85328 to 85928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,606 DEBUG Processing 179/1138 atomic regions from SNP 53470 to 54070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,643 DEBUG Processing 233/477 atomic regions from SNP 69752 to 70352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,671 DEBUG Processing 205/1028 atomic regions from SNP 61276 to 61876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,733 DEBUG Processing 267/910 atomic regions from SNP 79866 to 80466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,743 DEBUG Processing 68/653 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,802 DEBUG Processing 286/862 atomic regions from SNP 85628 to 86228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,849 DEBUG Processing 234/477 atomic regions from SNP 70052 to 70652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,858 DEBUG Processing 180/1138 atomic regions from SNP 53770 to 54370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,908 DEBUG Processing 206/1028 atomic regions from SNP 61576 to 62176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,952 DEBUG Processing 69/653 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,964 DEBUG Processing 268/910 atomic regions from SNP 80166 to 80766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,017 DEBUG Processing 287/862 atomic regions from SNP 85928 to 86528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,055 DEBUG Processing 235/477 atomic regions from SNP 70352 to 70952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,127 DEBUG Processing 181/1138 atomic regions from SNP 54070 to 54670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,151 DEBUG Processing 207/1028 atomic regions from SNP 61876 to 62476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,165 DEBUG Processing 70/653 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,186 DEBUG Processing 269/910 atomic regions from SNP 80466 to 81066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,231 DEBUG Processing 288/862 atomic regions from SNP 86228 to 86828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,258 DEBUG Processing 236/477 atomic regions from SNP 70652 to 71252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,379 DEBUG Processing 71/653 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,389 DEBUG Processing 182/1138 atomic regions from SNP 54370 to 54970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,389 DEBUG Processing 208/1028 atomic regions from SNP 62176 to 62776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,409 DEBUG Processing 270/910 atomic regions from SNP 80766 to 81366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,451 DEBUG Processing 289/862 atomic regions from SNP 86528 to 87128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,464 DEBUG Processing 237/477 atomic regions from SNP 70952 to 71552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,592 DEBUG Processing 72/653 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,643 DEBUG Processing 209/1028 atomic regions from SNP 62476 to 63076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,645 DEBUG Processing 271/910 atomic regions from SNP 81066 to 81666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,668 DEBUG Processing 290/862 atomic regions from SNP 86828 to 87428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,672 DEBUG Processing 183/1138 atomic regions from SNP 54670 to 55270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,672 DEBUG Processing 238/477 atomic regions from SNP 71252 to 71852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,802 DEBUG Processing 73/653 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,878 DEBUG Processing 272/910 atomic regions from SNP 81366 to 81966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,883 DEBUG Processing 239/477 atomic regions from SNP 71552 to 72152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,884 DEBUG Processing 210/1028 atomic regions from SNP 62776 to 63376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,888 DEBUG Processing 291/862 atomic regions from SNP 87128 to 87728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,940 DEBUG Processing 184/1138 atomic regions from SNP 54970 to 55570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,009 DEBUG Processing 74/653 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,096 DEBUG Processing 240/477 atomic regions from SNP 71852 to 72452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,108 DEBUG Processing 292/862 atomic regions from SNP 87428 to 88028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,124 DEBUG Processing 211/1028 atomic regions from SNP 63076 to 63676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,135 DEBUG Processing 273/910 atomic regions from SNP 81666 to 82266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,186 DEBUG Processing 185/1138 atomic regions from SNP 55270 to 55870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,216 DEBUG Processing 75/653 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,304 DEBUG Processing 241/477 atomic regions from SNP 72152 to 72752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,327 DEBUG Processing 293/862 atomic regions from SNP 87728 to 88328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,369 DEBUG Processing 212/1028 atomic regions from SNP 63376 to 63976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,390 DEBUG Processing 274/910 atomic regions from SNP 81966 to 82566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,432 DEBUG Processing 186/1138 atomic regions from SNP 55570 to 56170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,439 DEBUG Processing 76/653 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,510 DEBUG Processing 242/477 atomic regions from SNP 72452 to 73052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,541 DEBUG Processing 294/862 atomic regions from SNP 88028 to 88628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,617 DEBUG Processing 213/1028 atomic regions from SNP 63676 to 64276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,645 DEBUG Processing 275/910 atomic regions from SNP 82266 to 82866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,653 DEBUG Processing 77/653 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,679 DEBUG Processing 187/1138 atomic regions from SNP 55870 to 56470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,717 DEBUG Processing 243/477 atomic regions from SNP 72752 to 73352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,755 DEBUG Processing 295/862 atomic regions from SNP 88328 to 88928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,863 DEBUG Processing 78/653 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,871 DEBUG Processing 214/1028 atomic regions from SNP 63976 to 64576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,900 DEBUG Processing 276/910 atomic regions from SNP 82566 to 83166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,922 DEBUG Processing 244/477 atomic regions from SNP 73052 to 73652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,925 DEBUG Processing 188/1138 atomic regions from SNP 56170 to 56770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,967 DEBUG Processing 296/862 atomic regions from SNP 88628 to 89228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,072 DEBUG Processing 79/653 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,129 DEBUG Processing 245/477 atomic regions from SNP 73352 to 73952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,131 DEBUG Processing 215/1028 atomic regions from SNP 64276 to 64876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,152 DEBUG Processing 277/910 atomic regions from SNP 82866 to 83466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,178 DEBUG Processing 189/1138 atomic regions from SNP 56470 to 57070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,184 DEBUG Processing 297/862 atomic regions from SNP 88928 to 89528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,279 DEBUG Processing 80/653 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,336 DEBUG Processing 246/477 atomic regions from SNP 73652 to 74252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,386 DEBUG Processing 278/910 atomic regions from SNP 83166 to 83766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,394 DEBUG Processing 216/1028 atomic regions from SNP 64576 to 65176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,401 DEBUG Processing 298/862 atomic regions from SNP 89228 to 89828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,442 DEBUG Processing 190/1138 atomic regions from SNP 56770 to 57370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,488 DEBUG Processing 81/653 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,541 DEBUG Processing 247/477 atomic regions from SNP 73952 to 74552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,617 DEBUG Processing 279/910 atomic regions from SNP 83466 to 84066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,619 DEBUG Processing 299/862 atomic regions from SNP 89528 to 90128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,656 DEBUG Processing 217/1028 atomic regions from SNP 64876 to 65476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,697 DEBUG Processing 82/653 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,718 DEBUG Processing 191/1138 atomic regions from SNP 57070 to 57670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,745 DEBUG Processing 248/477 atomic regions from SNP 74252 to 74852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,839 DEBUG Processing 300/862 atomic regions from SNP 89828 to 90428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,843 DEBUG Processing 280/910 atomic regions from SNP 83766 to 84366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,898 DEBUG Processing 218/1028 atomic regions from SNP 65176 to 65776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,910 DEBUG Processing 83/653 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,951 DEBUG Processing 249/477 atomic regions from SNP 74552 to 75152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,995 DEBUG Processing 192/1138 atomic regions from SNP 57370 to 57970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,052 DEBUG Processing 301/862 atomic regions from SNP 90128 to 90728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,065 DEBUG Processing 281/910 atomic regions from SNP 84066 to 84666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,124 DEBUG Processing 84/653 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,135 DEBUG Processing 219/1028 atomic regions from SNP 65476 to 66076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,156 DEBUG Processing 250/477 atomic regions from SNP 74852 to 75452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,269 DEBUG Processing 302/862 atomic regions from SNP 90428 to 91028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,276 DEBUG Processing 193/1138 atomic regions from SNP 57670 to 58270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,288 DEBUG Processing 282/910 atomic regions from SNP 84366 to 84966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,344 DEBUG Processing 85/653 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,362 DEBUG Processing 251/477 atomic regions from SNP 75152 to 75752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,373 DEBUG Processing 220/1028 atomic regions from SNP 65776 to 66376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,487 DEBUG Processing 303/862 atomic regions from SNP 90728 to 91328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,511 DEBUG Processing 283/910 atomic regions from SNP 84666 to 85266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,558 DEBUG Processing 86/653 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,558 DEBUG Processing 194/1138 atomic regions from SNP 57970 to 58570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,574 DEBUG Processing 252/477 atomic regions from SNP 75452 to 76052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,608 DEBUG Processing 221/1028 atomic regions from SNP 66076 to 66676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,703 DEBUG Processing 304/862 atomic regions from SNP 91028 to 91628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,734 DEBUG Processing 284/910 atomic regions from SNP 84966 to 85566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,773 DEBUG Processing 87/653 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,786 DEBUG Processing 253/477 atomic regions from SNP 75752 to 76352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,834 DEBUG Processing 195/1138 atomic regions from SNP 58270 to 58870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,846 DEBUG Processing 222/1028 atomic regions from SNP 66376 to 66976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,914 DEBUG Processing 305/862 atomic regions from SNP 91328 to 91928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,954 DEBUG Processing 285/910 atomic regions from SNP 85266 to 85866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,988 DEBUG Processing 88/653 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,997 DEBUG Processing 254/477 atomic regions from SNP 76052 to 76652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,085 DEBUG Processing 223/1028 atomic regions from SNP 66676 to 67276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,105 DEBUG Processing 196/1138 atomic regions from SNP 58570 to 59170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,128 DEBUG Processing 306/862 atomic regions from SNP 91628 to 92228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,174 DEBUG Processing 286/910 atomic regions from SNP 85566 to 86166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,199 DEBUG Processing 89/653 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,204 DEBUG Processing 255/477 atomic regions from SNP 76352 to 76952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,324 DEBUG Processing 224/1028 atomic regions from SNP 66976 to 67576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,343 DEBUG Processing 307/862 atomic regions from SNP 91928 to 92528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,360 DEBUG Processing 197/1138 atomic regions from SNP 58870 to 59470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,394 DEBUG Processing 287/910 atomic regions from SNP 85866 to 86466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,410 DEBUG Processing 90/653 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,412 DEBUG Processing 256/477 atomic regions from SNP 76652 to 77252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,559 DEBUG Processing 308/862 atomic regions from SNP 92228 to 92828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,563 DEBUG Processing 225/1028 atomic regions from SNP 67276 to 67876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,615 DEBUG Processing 288/910 atomic regions from SNP 86166 to 86766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,615 DEBUG Processing 198/1138 atomic regions from SNP 59170 to 59770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,620 DEBUG Processing 257/477 atomic regions from SNP 76952 to 77552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,642 DEBUG Processing 91/653 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,776 DEBUG Processing 309/862 atomic regions from SNP 92528 to 93128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,804 DEBUG Processing 226/1028 atomic regions from SNP 67576 to 68176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,826 DEBUG Processing 258/477 atomic regions from SNP 77252 to 77852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,840 DEBUG Processing 289/910 atomic regions from SNP 86466 to 87066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,862 DEBUG Processing 92/653 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,880 DEBUG Processing 199/1138 atomic regions from SNP 59470 to 60070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,991 DEBUG Processing 310/862 atomic regions from SNP 92828 to 93428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,034 DEBUG Processing 259/477 atomic regions from SNP 77552 to 78152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,045 DEBUG Processing 227/1028 atomic regions from SNP 67876 to 68476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,062 DEBUG Processing 290/910 atomic regions from SNP 86766 to 87366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,076 DEBUG Processing 93/653 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,132 DEBUG Processing 200/1138 atomic regions from SNP 59770 to 60370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,202 DEBUG Processing 311/862 atomic regions from SNP 93128 to 93728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,241 DEBUG Processing 260/477 atomic regions from SNP 77852 to 78452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,285 DEBUG Processing 291/910 atomic regions from SNP 87066 to 87666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,286 DEBUG Processing 228/1028 atomic regions from SNP 68176 to 68776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,287 DEBUG Processing 94/653 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,383 DEBUG Processing 201/1138 atomic regions from SNP 60070 to 60670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,417 DEBUG Processing 312/862 atomic regions from SNP 93428 to 94028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,448 DEBUG Processing 261/477 atomic regions from SNP 78152 to 78752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,498 DEBUG Processing 95/653 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,508 DEBUG Processing 292/910 atomic regions from SNP 87366 to 87966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,526 DEBUG Processing 229/1028 atomic regions from SNP 68476 to 69076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,631 DEBUG Processing 313/862 atomic regions from SNP 93728 to 94328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,652 DEBUG Processing 262/477 atomic regions from SNP 78452 to 79052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,658 DEBUG Processing 202/1138 atomic regions from SNP 60370 to 60970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,710 DEBUG Processing 96/653 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,731 DEBUG Processing 293/910 atomic regions from SNP 87666 to 88266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,765 DEBUG Processing 230/1028 atomic regions from SNP 68776 to 69376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,846 DEBUG Processing 314/862 atomic regions from SNP 94028 to 94628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,859 DEBUG Processing 263/477 atomic regions from SNP 78752 to 79352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,922 DEBUG Processing 97/653 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,931 DEBUG Processing 203/1138 atomic regions from SNP 60670 to 61270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,954 DEBUG Processing 294/910 atomic regions from SNP 87966 to 88566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,003 DEBUG Processing 231/1028 atomic regions from SNP 69076 to 69676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,060 DEBUG Processing 315/862 atomic regions from SNP 94328 to 94928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,069 DEBUG Processing 264/477 atomic regions from SNP 79052 to 79652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,153 DEBUG Processing 98/653 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,186 DEBUG Processing 204/1138 atomic regions from SNP 60970 to 61570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,191 DEBUG Processing 295/910 atomic regions from SNP 88266 to 88866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,241 DEBUG Processing 232/1028 atomic regions from SNP 69376 to 69976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,271 DEBUG Processing 316/862 atomic regions from SNP 94628 to 95228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,277 DEBUG Processing 265/477 atomic regions from SNP 79352 to 79952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,383 DEBUG Processing 99/653 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,414 DEBUG Processing 296/910 atomic regions from SNP 88566 to 89166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,434 DEBUG Processing 205/1138 atomic regions from SNP 61270 to 61870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,481 DEBUG Processing 233/1028 atomic regions from SNP 69676 to 70276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,483 DEBUG Processing 317/862 atomic regions from SNP 94928 to 95528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,484 DEBUG Processing 266/477 atomic regions from SNP 79652 to 80252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,607 DEBUG Processing 100/653 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,637 DEBUG Processing 297/910 atomic regions from SNP 88866 to 89466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,683 DEBUG Processing 206/1138 atomic regions from SNP 61570 to 62170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,693 DEBUG Processing 267/477 atomic regions from SNP 79952 to 80552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,699 DEBUG Processing 318/862 atomic regions from SNP 95228 to 95828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,722 DEBUG Processing 234/1028 atomic regions from SNP 69976 to 70576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,829 DEBUG Processing 101/653 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,858 DEBUG Processing 298/910 atomic regions from SNP 89166 to 89766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,902 DEBUG Processing 268/477 atomic regions from SNP 80252 to 80852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,917 DEBUG Processing 319/862 atomic regions from SNP 95528 to 96128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,935 DEBUG Processing 207/1138 atomic regions from SNP 61870 to 62470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,962 DEBUG Processing 235/1028 atomic regions from SNP 70276 to 70876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,058 DEBUG Processing 102/653 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,077 DEBUG Processing 299/910 atomic regions from SNP 89466 to 90066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,110 DEBUG Processing 269/477 atomic regions from SNP 80552 to 81152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,133 DEBUG Processing 320/862 atomic regions from SNP 95828 to 96428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,199 DEBUG Processing 236/1028 atomic regions from SNP 70576 to 71176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,203 DEBUG Processing 208/1138 atomic regions from SNP 62170 to 62770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,292 DEBUG Processing 103/653 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,296 DEBUG Processing 300/910 atomic regions from SNP 89766 to 90366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,316 DEBUG Processing 270/477 atomic regions from SNP 80852 to 81452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,347 DEBUG Processing 321/862 atomic regions from SNP 96128 to 96728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,437 DEBUG Processing 237/1028 atomic regions from SNP 70876 to 71476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,473 DEBUG Processing 209/1138 atomic regions from SNP 62470 to 63070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,517 DEBUG Processing 104/653 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,519 DEBUG Processing 301/910 atomic regions from SNP 90066 to 90666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,527 DEBUG Processing 271/477 atomic regions from SNP 81152 to 81752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,561 DEBUG Processing 322/862 atomic regions from SNP 96428 to 97028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,674 DEBUG Processing 238/1028 atomic regions from SNP 71176 to 71776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,723 DEBUG Processing 210/1138 atomic regions from SNP 62770 to 63370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,729 DEBUG Processing 105/653 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,735 DEBUG Processing 272/477 atomic regions from SNP 81452 to 82052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,742 DEBUG Processing 302/910 atomic regions from SNP 90366 to 90966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,780 DEBUG Processing 323/862 atomic regions from SNP 96728 to 97328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,908 DEBUG Processing 239/1028 atomic regions from SNP 71476 to 72076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,941 DEBUG Processing 106/653 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,942 DEBUG Processing 273/477 atomic regions from SNP 81752 to 82352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,966 DEBUG Processing 303/910 atomic regions from SNP 90666 to 91266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,992 DEBUG Processing 211/1138 atomic regions from SNP 63070 to 63670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,994 DEBUG Processing 324/862 atomic regions from SNP 97028 to 97628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,144 DEBUG Processing 240/1028 atomic regions from SNP 71776 to 72376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,154 DEBUG Processing 274/477 atomic regions from SNP 82052 to 82652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,155 DEBUG Processing 107/653 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,191 DEBUG Processing 304/910 atomic regions from SNP 90966 to 91566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,207 DEBUG Processing 325/862 atomic regions from SNP 97328 to 97928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,267 DEBUG Processing 212/1138 atomic regions from SNP 63370 to 63970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,366 DEBUG Processing 275/477 atomic regions from SNP 82352 to 82952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,372 DEBUG Processing 108/653 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,380 DEBUG Processing 241/1028 atomic regions from SNP 72076 to 72676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,414 DEBUG Processing 305/910 atomic regions from SNP 91266 to 91866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,418 DEBUG Processing 326/862 atomic regions from SNP 97628 to 98228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,530 DEBUG Processing 213/1138 atomic regions from SNP 63670 to 64270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,579 DEBUG Processing 276/477 atomic regions from SNP 82652 to 83252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,614 DEBUG Processing 109/653 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,618 DEBUG Processing 242/1028 atomic regions from SNP 72376 to 72976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,633 DEBUG Processing 327/862 atomic regions from SNP 97928 to 98528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,636 DEBUG Processing 306/910 atomic regions from SNP 91566 to 92166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,772 DEBUG Processing 214/1138 atomic regions from SNP 63970 to 64570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,793 DEBUG Processing 277/477 atomic regions from SNP 82952 to 83552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,849 DEBUG Processing 328/862 atomic regions from SNP 98228 to 98828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,849 DEBUG Processing 110/653 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,858 DEBUG Processing 243/1028 atomic regions from SNP 72676 to 73276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,861 DEBUG Processing 307/910 atomic regions from SNP 91866 to 92466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,004 DEBUG Processing 278/477 atomic regions from SNP 83252 to 83852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,017 DEBUG Processing 215/1138 atomic regions from SNP 64270 to 64870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,066 DEBUG Processing 111/653 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,068 DEBUG Processing 329/862 atomic regions from SNP 98528 to 99128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,084 DEBUG Processing 308/910 atomic regions from SNP 92166 to 92766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,097 DEBUG Processing 244/1028 atomic regions from SNP 72976 to 73576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,211 DEBUG Processing 279/477 atomic regions from SNP 83552 to 84152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,263 DEBUG Processing 216/1138 atomic regions from SNP 64570 to 65170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,282 DEBUG Processing 112/653 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,287 DEBUG Processing 330/862 atomic regions from SNP 98828 to 99428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,309 DEBUG Processing 309/910 atomic regions from SNP 92466 to 93066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,334 DEBUG Processing 245/1028 atomic regions from SNP 73276 to 73876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,415 DEBUG Processing 280/477 atomic regions from SNP 83852 to 84452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,495 DEBUG Processing 113/653 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,505 DEBUG Processing 331/862 atomic regions from SNP 99128 to 99728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,511 DEBUG Processing 217/1138 atomic regions from SNP 64870 to 65470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,532 DEBUG Processing 310/910 atomic regions from SNP 92766 to 93366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,569 DEBUG Processing 246/1028 atomic regions from SNP 73576 to 74176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,619 DEBUG Processing 281/477 atomic regions from SNP 84152 to 84752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,704 DEBUG Processing 114/653 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,721 DEBUG Processing 332/862 atomic regions from SNP 99428 to 100028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,756 DEBUG Processing 311/910 atomic regions from SNP 93066 to 93666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,759 DEBUG Processing 218/1138 atomic regions from SNP 65170 to 65770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,806 DEBUG Processing 247/1028 atomic regions from SNP 73876 to 74476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,827 DEBUG Processing 282/477 atomic regions from SNP 84452 to 85052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,911 DEBUG Processing 115/653 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,935 DEBUG Processing 333/862 atomic regions from SNP 99728 to 100328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,979 DEBUG Processing 312/910 atomic regions from SNP 93366 to 93966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,006 DEBUG Processing 219/1138 atomic regions from SNP 65470 to 66070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,039 DEBUG Processing 283/477 atomic regions from SNP 84752 to 85352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,043 DEBUG Processing 248/1028 atomic regions from SNP 74176 to 74776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,121 DEBUG Processing 116/653 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,148 DEBUG Processing 334/862 atomic regions from SNP 100028 to 100628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,200 DEBUG Processing 313/910 atomic regions from SNP 93666 to 94266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,250 DEBUG Processing 284/477 atomic regions from SNP 85052 to 85652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,252 DEBUG Processing 220/1138 atomic regions from SNP 65770 to 66370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,278 DEBUG Processing 249/1028 atomic regions from SNP 74476 to 75076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,335 DEBUG Processing 117/653 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,360 DEBUG Processing 335/862 atomic regions from SNP 100328 to 100928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,422 DEBUG Processing 314/910 atomic regions from SNP 93966 to 94566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,454 DEBUG Processing 285/477 atomic regions from SNP 85352 to 85952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,497 DEBUG Processing 221/1138 atomic regions from SNP 66070 to 66670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,515 DEBUG Processing 250/1028 atomic regions from SNP 74776 to 75376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,550 DEBUG Processing 118/653 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,574 DEBUG Processing 336/862 atomic regions from SNP 100628 to 101228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,643 DEBUG Processing 315/910 atomic regions from SNP 94266 to 94866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,657 DEBUG Processing 286/477 atomic regions from SNP 85652 to 86252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,745 DEBUG Processing 222/1138 atomic regions from SNP 66370 to 66970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,752 DEBUG Processing 251/1028 atomic regions from SNP 75076 to 75676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,763 DEBUG Processing 119/653 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,787 DEBUG Processing 337/862 atomic regions from SNP 100928 to 101528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,860 DEBUG Processing 287/477 atomic regions from SNP 85952 to 86552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,876 DEBUG Processing 316/910 atomic regions from SNP 94566 to 95166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,976 DEBUG Processing 120/653 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,991 DEBUG Processing 223/1138 atomic regions from SNP 66670 to 67270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,001 DEBUG Processing 338/862 atomic regions from SNP 101228 to 101828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,003 DEBUG Processing 252/1028 atomic regions from SNP 75376 to 75976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,065 DEBUG Processing 288/477 atomic regions from SNP 86252 to 86852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,108 DEBUG Processing 317/910 atomic regions from SNP 94866 to 95466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,186 DEBUG Processing 121/653 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,214 DEBUG Processing 339/862 atomic regions from SNP 101528 to 102128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,240 DEBUG Processing 224/1138 atomic regions from SNP 66970 to 67570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,249 DEBUG Processing 253/1028 atomic regions from SNP 75676 to 76276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,273 DEBUG Processing 289/477 atomic regions from SNP 86552 to 87152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,327 DEBUG Processing 318/910 atomic regions from SNP 95166 to 95766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,397 DEBUG Processing 122/653 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,428 DEBUG Processing 340/862 atomic regions from SNP 101828 to 102428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,482 DEBUG Processing 290/477 atomic regions from SNP 86852 to 87452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,488 DEBUG Processing 254/1028 atomic regions from SNP 75976 to 76576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,488 DEBUG Processing 225/1138 atomic regions from SNP 67270 to 67870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,549 DEBUG Processing 319/910 atomic regions from SNP 95466 to 96066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,605 DEBUG Processing 123/653 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,637 DEBUG Processing 341/862 atomic regions from SNP 102128 to 102728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,690 DEBUG Processing 291/477 atomic regions from SNP 87152 to 87752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,725 DEBUG Processing 255/1028 atomic regions from SNP 76276 to 76876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,736 DEBUG Processing 226/1138 atomic regions from SNP 67570 to 68170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,772 DEBUG Processing 320/910 atomic regions from SNP 95766 to 96366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,816 DEBUG Processing 124/653 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,849 DEBUG Processing 342/862 atomic regions from SNP 102428 to 103028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,897 DEBUG Processing 292/477 atomic regions from SNP 87452 to 88052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,964 DEBUG Processing 256/1028 atomic regions from SNP 76576 to 77176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,985 DEBUG Processing 227/1138 atomic regions from SNP 67870 to 68470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,995 DEBUG Processing 321/910 atomic regions from SNP 96066 to 96666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,027 DEBUG Processing 125/653 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,060 DEBUG Processing 343/862 atomic regions from SNP 102728 to 103328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,103 DEBUG Processing 293/477 atomic regions from SNP 87752 to 88352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,206 DEBUG Processing 257/1028 atomic regions from SNP 76876 to 77476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,220 DEBUG Processing 322/910 atomic regions from SNP 96366 to 96966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,236 DEBUG Processing 228/1138 atomic regions from SNP 68170 to 68770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,237 DEBUG Processing 126/653 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,272 DEBUG Processing 344/862 atomic regions from SNP 103028 to 103628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,310 DEBUG Processing 294/477 atomic regions from SNP 88052 to 88652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,443 DEBUG Processing 323/910 atomic regions from SNP 96666 to 97266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,443 DEBUG Processing 258/1028 atomic regions from SNP 77176 to 77776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,448 DEBUG Processing 127/653 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,484 DEBUG Processing 229/1138 atomic regions from SNP 68470 to 69070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,485 DEBUG Processing 345/862 atomic regions from SNP 103328 to 103928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,521 DEBUG Processing 295/477 atomic regions from SNP 88352 to 88952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,656 DEBUG Processing 128/653 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,667 DEBUG Processing 324/910 atomic regions from SNP 96966 to 97566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,683 DEBUG Processing 259/1028 atomic regions from SNP 77476 to 78076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,701 DEBUG Processing 346/862 atomic regions from SNP 103628 to 104228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,731 DEBUG Processing 296/477 atomic regions from SNP 88652 to 89252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,735 DEBUG Processing 230/1138 atomic regions from SNP 68770 to 69370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,862 DEBUG Processing 129/653 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,889 DEBUG Processing 325/910 atomic regions from SNP 97266 to 97866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,915 DEBUG Processing 347/862 atomic regions from SNP 103928 to 104528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,921 DEBUG Processing 260/1028 atomic regions from SNP 77776 to 78376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,940 DEBUG Processing 297/477 atomic regions from SNP 88952 to 89552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,982 DEBUG Processing 231/1138 atomic regions from SNP 69070 to 69670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,070 DEBUG Processing 130/653 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,111 DEBUG Processing 326/910 atomic regions from SNP 97566 to 98166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,128 DEBUG Processing 348/862 atomic regions from SNP 104228 to 104828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,144 DEBUG Processing 298/477 atomic regions from SNP 89252 to 89852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,161 DEBUG Processing 261/1028 atomic regions from SNP 78076 to 78676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,227 DEBUG Processing 232/1138 atomic regions from SNP 69370 to 69970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,281 DEBUG Processing 131/653 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,334 DEBUG Processing 327/910 atomic regions from SNP 97866 to 98466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,342 DEBUG Processing 349/862 atomic regions from SNP 104528 to 105128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,351 DEBUG Processing 299/477 atomic regions from SNP 89552 to 90152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,398 DEBUG Processing 262/1028 atomic regions from SNP 78376 to 78976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,475 DEBUG Processing 233/1138 atomic regions from SNP 69670 to 70270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,490 DEBUG Processing 132/653 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,557 DEBUG Processing 350/862 atomic regions from SNP 104828 to 105428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,557 DEBUG Processing 328/910 atomic regions from SNP 98166 to 98766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,557 DEBUG Processing 300/477 atomic regions from SNP 89852 to 90452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,638 DEBUG Processing 263/1028 atomic regions from SNP 78676 to 79276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,701 DEBUG Processing 133/653 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,731 DEBUG Processing 234/1138 atomic regions from SNP 69970 to 70570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,767 DEBUG Processing 301/477 atomic regions from SNP 90152 to 90752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,778 DEBUG Processing 351/862 atomic regions from SNP 105128 to 105728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,783 DEBUG Processing 329/910 atomic regions from SNP 98466 to 99066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,877 DEBUG Processing 264/1028 atomic regions from SNP 78976 to 79576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,909 DEBUG Processing 134/653 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,978 DEBUG Processing 302/477 atomic regions from SNP 90452 to 91052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,985 DEBUG Processing 235/1138 atomic regions from SNP 70270 to 70870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,992 DEBUG Processing 352/862 atomic regions from SNP 105428 to 106028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,007 DEBUG Processing 330/910 atomic regions from SNP 98766 to 99366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,112 DEBUG Processing 265/1028 atomic regions from SNP 79276 to 79876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,119 DEBUG Processing 135/653 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,186 DEBUG Processing 303/477 atomic regions from SNP 90752 to 91352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,205 DEBUG Processing 353/862 atomic regions from SNP 105728 to 106328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,229 DEBUG Processing 331/910 atomic regions from SNP 99066 to 99666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,234 DEBUG Processing 236/1138 atomic regions from SNP 70570 to 71170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,328 DEBUG Processing 136/653 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,348 DEBUG Processing 266/1028 atomic regions from SNP 79576 to 80176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,392 DEBUG Processing 304/477 atomic regions from SNP 91052 to 91652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,419 DEBUG Processing 354/862 atomic regions from SNP 106028 to 106628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,451 DEBUG Processing 332/910 atomic regions from SNP 99366 to 99966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,480 DEBUG Processing 237/1138 atomic regions from SNP 70870 to 71470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,541 DEBUG Processing 137/653 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,583 DEBUG Processing 267/1028 atomic regions from SNP 79876 to 80476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,620 DEBUG Processing 305/477 atomic regions from SNP 91352 to 91952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,642 DEBUG Processing 355/862 atomic regions from SNP 106328 to 106928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,674 DEBUG Processing 333/910 atomic regions from SNP 99666 to 100266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,725 DEBUG Processing 238/1138 atomic regions from SNP 71170 to 71770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,753 DEBUG Processing 138/653 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,819 DEBUG Processing 268/1028 atomic regions from SNP 80176 to 80776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,845 DEBUG Processing 306/477 atomic regions from SNP 91652 to 92252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,873 DEBUG Processing 356/862 atomic regions from SNP 106628 to 107228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,894 DEBUG Processing 334/910 atomic regions from SNP 99966 to 100566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,963 DEBUG Processing 139/653 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,971 DEBUG Processing 239/1138 atomic regions from SNP 71470 to 72070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,054 DEBUG Processing 307/477 atomic regions from SNP 91952 to 92552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,055 DEBUG Processing 269/1028 atomic regions from SNP 80476 to 81076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,106 DEBUG Processing 357/862 atomic regions from SNP 106928 to 107528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,116 DEBUG Processing 335/910 atomic regions from SNP 100266 to 100866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,170 DEBUG Processing 140/653 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,222 DEBUG Processing 240/1138 atomic regions from SNP 71770 to 72370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,262 DEBUG Processing 308/477 atomic regions from SNP 92252 to 92852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,292 DEBUG Processing 270/1028 atomic regions from SNP 80776 to 81376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,338 DEBUG Processing 336/910 atomic regions from SNP 100566 to 101166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,349 DEBUG Processing 358/862 atomic regions from SNP 107228 to 107828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,380 DEBUG Processing 141/653 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,472 DEBUG Processing 309/477 atomic regions from SNP 92552 to 93152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,495 DEBUG Processing 241/1138 atomic regions from SNP 72070 to 72670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,532 DEBUG Processing 271/1028 atomic regions from SNP 81076 to 81676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,560 DEBUG Processing 337/910 atomic regions from SNP 100866 to 101466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,569 DEBUG Processing 359/862 atomic regions from SNP 107528 to 108128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,588 DEBUG Processing 142/653 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,681 DEBUG Processing 310/477 atomic regions from SNP 92852 to 93452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,741 DEBUG Processing 242/1138 atomic regions from SNP 72370 to 72970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,773 DEBUG Processing 272/1028 atomic regions from SNP 81376 to 81976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,781 DEBUG Processing 360/862 atomic regions from SNP 107828 to 108428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,783 DEBUG Processing 338/910 atomic regions from SNP 101166 to 101766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,799 DEBUG Processing 143/653 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,887 DEBUG Processing 311/477 atomic regions from SNP 93152 to 93752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,989 DEBUG Processing 243/1138 atomic regions from SNP 72670 to 73270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,996 DEBUG Processing 361/862 atomic regions from SNP 108128 to 108728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,009 DEBUG Processing 339/910 atomic regions from SNP 101466 to 102066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,012 DEBUG Processing 144/653 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,014 DEBUG Processing 273/1028 atomic regions from SNP 81676 to 82276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,089 DEBUG Processing 312/477 atomic regions from SNP 93452 to 94052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,212 DEBUG Processing 362/862 atomic regions from SNP 108428 to 109028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,227 DEBUG Processing 145/653 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,235 DEBUG Processing 340/910 atomic regions from SNP 101766 to 102366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,241 DEBUG Processing 244/1138 atomic regions from SNP 72970 to 73570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,255 DEBUG Processing 274/1028 atomic regions from SNP 81976 to 82576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,293 DEBUG Processing 313/477 atomic regions from SNP 93752 to 94352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,427 DEBUG Processing 363/862 atomic regions from SNP 108728 to 109328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,441 DEBUG Processing 146/653 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,461 DEBUG Processing 341/910 atomic regions from SNP 102066 to 102666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,492 DEBUG Processing 245/1138 atomic regions from SNP 73270 to 73870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,496 DEBUG Processing 275/1028 atomic regions from SNP 82276 to 82876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,501 DEBUG Processing 314/477 atomic regions from SNP 94052 to 94652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,640 DEBUG Processing 364/862 atomic regions from SNP 109028 to 109628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,651 DEBUG Processing 147/653 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,685 DEBUG Processing 342/910 atomic regions from SNP 102366 to 102966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,717 DEBUG Processing 315/477 atomic regions from SNP 94352 to 94952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,735 DEBUG Processing 276/1028 atomic regions from SNP 82576 to 83176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,740 DEBUG Processing 246/1138 atomic regions from SNP 73570 to 74170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,850 DEBUG Processing 365/862 atomic regions from SNP 109328 to 109928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,860 DEBUG Processing 148/653 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,908 DEBUG Processing 343/910 atomic regions from SNP 102666 to 103266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,942 DEBUG Processing 316/477 atomic regions from SNP 94652 to 95252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,973 DEBUG Processing 277/1028 atomic regions from SNP 82876 to 83476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,986 DEBUG Processing 247/1138 atomic regions from SNP 73870 to 74470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,058 DEBUG Processing 366/862 atomic regions from SNP 109628 to 110228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,069 DEBUG Processing 149/653 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,132 DEBUG Processing 344/910 atomic regions from SNP 102966 to 103566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,166 DEBUG Processing 317/477 atomic regions from SNP 94952 to 95552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,211 DEBUG Processing 278/1028 atomic regions from SNP 83176 to 83776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,231 DEBUG Processing 248/1138 atomic regions from SNP 74170 to 74770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,271 DEBUG Processing 367/862 atomic regions from SNP 109928 to 110528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,283 DEBUG Processing 150/653 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,354 DEBUG Processing 345/910 atomic regions from SNP 103266 to 103866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,397 DEBUG Processing 318/477 atomic regions from SNP 95252 to 95852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,450 DEBUG Processing 279/1028 atomic regions from SNP 83476 to 84076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,478 DEBUG Processing 249/1138 atomic regions from SNP 74470 to 75070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,498 DEBUG Processing 151/653 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,502 DEBUG Processing 368/862 atomic regions from SNP 110228 to 110828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,579 DEBUG Processing 346/910 atomic regions from SNP 103566 to 104166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,610 DEBUG Processing 319/477 atomic regions from SNP 95552 to 96152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,694 DEBUG Processing 280/1028 atomic regions from SNP 83776 to 84376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,716 DEBUG Processing 152/653 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,717 DEBUG Processing 369/862 atomic regions from SNP 110528 to 111128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,746 DEBUG Processing 250/1138 atomic regions from SNP 74770 to 75370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,798 DEBUG Processing 347/910 atomic regions from SNP 103866 to 104466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,821 DEBUG Processing 320/477 atomic regions from SNP 95852 to 96452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,932 DEBUG Processing 370/862 atomic regions from SNP 110828 to 111428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,933 DEBUG Processing 281/1028 atomic regions from SNP 84076 to 84676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,934 DEBUG Processing 153/653 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,998 DEBUG Processing 251/1138 atomic regions from SNP 75070 to 75670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,020 DEBUG Processing 348/910 atomic regions from SNP 104166 to 104766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,046 DEBUG Processing 321/477 atomic regions from SNP 96152 to 96752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,150 DEBUG Processing 154/653 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,155 DEBUG Processing 371/862 atomic regions from SNP 111128 to 111728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,172 DEBUG Processing 282/1028 atomic regions from SNP 84376 to 84976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,240 DEBUG Processing 349/910 atomic regions from SNP 104466 to 105066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,248 DEBUG Processing 252/1138 atomic regions from SNP 75370 to 75970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,266 DEBUG Processing 322/477 atomic regions from SNP 96452 to 97052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,366 DEBUG Processing 155/653 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,373 DEBUG Processing 372/862 atomic regions from SNP 111428 to 112028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,410 DEBUG Processing 283/1028 atomic regions from SNP 84676 to 85276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,462 DEBUG Processing 350/910 atomic regions from SNP 104766 to 105366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,471 DEBUG Processing 323/477 atomic regions from SNP 96752 to 97352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,492 DEBUG Processing 253/1138 atomic regions from SNP 75670 to 76270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,579 DEBUG Processing 156/653 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,585 DEBUG Processing 373/862 atomic regions from SNP 111728 to 112328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,649 DEBUG Processing 284/1028 atomic regions from SNP 84976 to 85576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,677 DEBUG Processing 324/477 atomic regions from SNP 97052 to 97652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,685 DEBUG Processing 351/910 atomic regions from SNP 105066 to 105666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,737 DEBUG Processing 254/1138 atomic regions from SNP 75970 to 76570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,791 DEBUG Processing 157/653 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,795 DEBUG Processing 374/862 atomic regions from SNP 112028 to 112628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,883 DEBUG Processing 325/477 atomic regions from SNP 97352 to 97952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,885 DEBUG Processing 285/1028 atomic regions from SNP 85276 to 85876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,907 DEBUG Processing 352/910 atomic regions from SNP 105366 to 105966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,982 DEBUG Processing 255/1138 atomic regions from SNP 76270 to 76870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,003 DEBUG Processing 158/653 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,006 DEBUG Processing 375/862 atomic regions from SNP 112328 to 112928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,087 DEBUG Processing 326/477 atomic regions from SNP 97652 to 98252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,119 DEBUG Processing 286/1028 atomic regions from SNP 85576 to 86176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,127 DEBUG Processing 353/910 atomic regions from SNP 105666 to 106266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,220 DEBUG Processing 376/862 atomic regions from SNP 112628 to 113228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,220 DEBUG Processing 159/653 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,227 DEBUG Processing 256/1138 atomic regions from SNP 76570 to 77170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,314 DEBUG Processing 327/477 atomic regions from SNP 97952 to 98552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,348 DEBUG Processing 354/910 atomic regions from SNP 105966 to 106566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,354 DEBUG Processing 287/1028 atomic regions from SNP 85876 to 86476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,434 DEBUG Processing 377/862 atomic regions from SNP 112928 to 113528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,438 DEBUG Processing 160/653 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,475 DEBUG Processing 257/1138 atomic regions from SNP 76870 to 77470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,516 DEBUG Processing 328/477 atomic regions from SNP 98252 to 98852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,570 DEBUG Processing 355/910 atomic regions from SNP 106266 to 106866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,589 DEBUG Processing 288/1028 atomic regions from SNP 86176 to 86776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,648 DEBUG Processing 378/862 atomic regions from SNP 113228 to 113828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,653 DEBUG Processing 161/653 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,722 DEBUG Processing 258/1138 atomic regions from SNP 77170 to 77770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,724 DEBUG Processing 329/477 atomic regions from SNP 98552 to 99152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,792 DEBUG Processing 356/910 atomic regions from SNP 106566 to 107166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,825 DEBUG Processing 289/1028 atomic regions from SNP 86476 to 87076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,860 DEBUG Processing 379/862 atomic regions from SNP 113528 to 114128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,865 DEBUG Processing 162/653 atomic regions from SNP 48461 to 49062 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,931 DEBUG Processing 330/477 atomic regions from SNP 98852 to 99452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,969 DEBUG Processing 259/1138 atomic regions from SNP 77470 to 78070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,015 DEBUG Processing 357/910 atomic regions from SNP 106866 to 107466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,062 DEBUG Processing 290/1028 atomic regions from SNP 86776 to 87376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,074 DEBUG Processing 380/862 atomic regions from SNP 113828 to 114428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,076 DEBUG Processing 163/653 atomic regions from SNP 48762 to 49363 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,137 DEBUG Processing 331/477 atomic regions from SNP 99152 to 99752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,216 DEBUG Processing 260/1138 atomic regions from SNP 77770 to 78370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,238 DEBUG Processing 358/910 atomic regions from SNP 107166 to 107766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,287 DEBUG Processing 381/862 atomic regions from SNP 114128 to 114728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,290 DEBUG Processing 164/653 atomic regions from SNP 49063 to 49664 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,299 DEBUG Processing 291/1028 atomic regions from SNP 87076 to 87676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,345 DEBUG Processing 332/477 atomic regions from SNP 99452 to 100052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,465 DEBUG Processing 261/1138 atomic regions from SNP 78070 to 78670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,485 DEBUG Processing 359/910 atomic regions from SNP 107466 to 108066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,506 DEBUG Processing 165/653 atomic regions from SNP 49364 to 49965 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,506 DEBUG Processing 382/862 atomic regions from SNP 114428 to 115028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,537 DEBUG Processing 292/1028 atomic regions from SNP 87376 to 87976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,552 DEBUG Processing 333/477 atomic regions from SNP 99752 to 100352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,715 DEBUG Processing 262/1138 atomic regions from SNP 78370 to 78970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,720 DEBUG Processing 166/653 atomic regions from SNP 49665 to 50266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,724 DEBUG Processing 383/862 atomic regions from SNP 114728 to 115328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,729 DEBUG Processing 360/910 atomic regions from SNP 107766 to 108366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,760 DEBUG Processing 334/477 atomic regions from SNP 100052 to 100652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,774 DEBUG Processing 293/1028 atomic regions from SNP 87676 to 88276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,936 DEBUG Processing 167/653 atomic regions from SNP 49966 to 50567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,942 DEBUG Processing 384/862 atomic regions from SNP 115028 to 115628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,957 DEBUG Processing 361/910 atomic regions from SNP 108066 to 108666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,969 DEBUG Processing 263/1138 atomic regions from SNP 78670 to 79270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,969 DEBUG Processing 335/477 atomic regions from SNP 100352 to 100952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,013 DEBUG Processing 294/1028 atomic regions from SNP 87976 to 88576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,149 DEBUG Processing 168/653 atomic regions from SNP 50267 to 50868 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,161 DEBUG Processing 385/862 atomic regions from SNP 115328 to 115928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,177 DEBUG Processing 336/477 atomic regions from SNP 100652 to 101252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,182 DEBUG Processing 362/910 atomic regions from SNP 108366 to 108966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,220 DEBUG Processing 264/1138 atomic regions from SNP 78970 to 79570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,252 DEBUG Processing 295/1028 atomic regions from SNP 88276 to 88876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,363 DEBUG Processing 169/653 atomic regions from SNP 50568 to 51169 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,381 DEBUG Processing 386/862 atomic regions from SNP 115628 to 116228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,384 DEBUG Processing 337/477 atomic regions from SNP 100952 to 101552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,410 DEBUG Processing 363/910 atomic regions from SNP 108666 to 109266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,466 DEBUG Processing 265/1138 atomic regions from SNP 79270 to 79870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,487 DEBUG Processing 296/1028 atomic regions from SNP 88576 to 89176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,575 DEBUG Processing 170/653 atomic regions from SNP 50869 to 51470 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,590 DEBUG Processing 338/477 atomic regions from SNP 101252 to 101852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,599 DEBUG Processing 387/862 atomic regions from SNP 115928 to 116528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,636 DEBUG Processing 364/910 atomic regions from SNP 108966 to 109566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,715 DEBUG Processing 266/1138 atomic regions from SNP 79570 to 80170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,735 DEBUG Processing 297/1028 atomic regions from SNP 88876 to 89476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,786 DEBUG Processing 171/653 atomic regions from SNP 51170 to 51771 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,798 DEBUG Processing 339/477 atomic regions from SNP 101552 to 102152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,811 DEBUG Processing 388/862 atomic regions from SNP 116228 to 116828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,857 DEBUG Processing 365/910 atomic regions from SNP 109266 to 109866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,968 DEBUG Processing 267/1138 atomic regions from SNP 79870 to 80470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,976 DEBUG Processing 298/1028 atomic regions from SNP 89176 to 89776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,999 DEBUG Processing 172/653 atomic regions from SNP 51471 to 52072 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,006 DEBUG Processing 340/477 atomic regions from SNP 101852 to 102452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,023 DEBUG Processing 389/862 atomic regions from SNP 116528 to 117128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,075 DEBUG Processing 366/910 atomic regions from SNP 109566 to 110166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,214 DEBUG Processing 173/653 atomic regions from SNP 51772 to 52373 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,217 DEBUG Processing 341/477 atomic regions from SNP 102152 to 102752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,219 DEBUG Processing 299/1028 atomic regions from SNP 89476 to 90076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,222 DEBUG Processing 268/1138 atomic regions from SNP 80170 to 80770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,238 DEBUG Processing 390/862 atomic regions from SNP 116828 to 117428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,299 DEBUG Processing 367/910 atomic regions from SNP 109866 to 110466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,432 DEBUG Processing 342/477 atomic regions from SNP 102452 to 103052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,437 DEBUG Processing 174/653 atomic regions from SNP 52073 to 52674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,462 DEBUG Processing 391/862 atomic regions from SNP 117128 to 117728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,463 DEBUG Processing 300/1028 atomic regions from SNP 89776 to 90376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,477 DEBUG Processing 269/1138 atomic regions from SNP 80470 to 81070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,539 DEBUG Processing 368/910 atomic regions from SNP 110166 to 110766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,649 DEBUG Processing 343/477 atomic regions from SNP 102752 to 103352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,656 DEBUG Processing 175/653 atomic regions from SNP 52374 to 52975 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,680 DEBUG Processing 392/862 atomic regions from SNP 117428 to 118028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,706 DEBUG Processing 301/1028 atomic regions from SNP 90076 to 90676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,731 DEBUG Processing 270/1138 atomic regions from SNP 80770 to 81370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,781 DEBUG Processing 369/910 atomic regions from SNP 110466 to 111066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,868 DEBUG Processing 176/653 atomic regions from SNP 52675 to 53276 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,873 DEBUG Processing 344/477 atomic regions from SNP 103052 to 103652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,898 DEBUG Processing 393/862 atomic regions from SNP 117728 to 118328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,949 DEBUG Processing 302/1028 atomic regions from SNP 90376 to 90976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,982 DEBUG Processing 271/1138 atomic regions from SNP 81070 to 81670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,001 DEBUG Processing 370/910 atomic regions from SNP 110766 to 111366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,080 DEBUG Processing 177/653 atomic regions from SNP 52976 to 53577 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,095 DEBUG Processing 345/477 atomic regions from SNP 103352 to 103952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,109 DEBUG Processing 394/862 atomic regions from SNP 118028 to 118628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,188 DEBUG Processing 303/1028 atomic regions from SNP 90676 to 91276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,222 DEBUG Processing 371/910 atomic regions from SNP 111066 to 111666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,230 DEBUG Processing 272/1138 atomic regions from SNP 81370 to 81970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,296 DEBUG Processing 178/653 atomic regions from SNP 53277 to 53878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,314 DEBUG Processing 346/477 atomic regions from SNP 103652 to 104252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,319 DEBUG Processing 395/862 atomic regions from SNP 118328 to 118928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,428 DEBUG Processing 304/1028 atomic regions from SNP 90976 to 91576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,447 DEBUG Processing 372/910 atomic regions from SNP 111366 to 111966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,479 DEBUG Processing 273/1138 atomic regions from SNP 81670 to 82270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,512 DEBUG Processing 179/653 atomic regions from SNP 53578 to 54179 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,528 DEBUG Processing 396/862 atomic regions from SNP 118628 to 119228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,537 DEBUG Processing 347/477 atomic regions from SNP 103952 to 104552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,671 DEBUG Processing 305/1028 atomic regions from SNP 91276 to 91876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,672 DEBUG Processing 373/910 atomic regions from SNP 111666 to 112266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,727 DEBUG Processing 274/1138 atomic regions from SNP 81970 to 82570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,729 DEBUG Processing 180/653 atomic regions from SNP 53879 to 54480 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,741 DEBUG Processing 397/862 atomic regions from SNP 118928 to 119528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,747 DEBUG Processing 348/477 atomic regions from SNP 104252 to 104852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,898 DEBUG Processing 374/910 atomic regions from SNP 111966 to 112566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,913 DEBUG Processing 306/1028 atomic regions from SNP 91576 to 92176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,953 DEBUG Processing 181/653 atomic regions from SNP 54180 to 54781 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,955 DEBUG Processing 398/862 atomic regions from SNP 119228 to 119828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,960 DEBUG Processing 349/477 atomic regions from SNP 104552 to 105152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,977 DEBUG Processing 275/1138 atomic regions from SNP 82270 to 82870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,123 DEBUG Processing 375/910 atomic regions from SNP 112266 to 112866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,156 DEBUG Processing 307/1028 atomic regions from SNP 91876 to 92476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,171 DEBUG Processing 182/653 atomic regions from SNP 54481 to 55082 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,172 DEBUG Processing 350/477 atomic regions from SNP 104852 to 105452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,173 DEBUG Processing 399/862 atomic regions from SNP 119528 to 120128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,226 DEBUG Processing 276/1138 atomic regions from SNP 82570 to 83170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,349 DEBUG Processing 376/910 atomic regions from SNP 112566 to 113166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,385 DEBUG Processing 351/477 atomic regions from SNP 105152 to 105752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,390 DEBUG Processing 183/653 atomic regions from SNP 54782 to 55383 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,398 DEBUG Processing 308/1028 atomic regions from SNP 92176 to 92776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,409 DEBUG Processing 400/862 atomic regions from SNP 119828 to 120428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,474 DEBUG Processing 277/1138 atomic regions from SNP 82870 to 83470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,595 DEBUG Processing 377/910 atomic regions from SNP 112866 to 113466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,598 DEBUG Processing 352/477 atomic regions from SNP 105452 to 106052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,608 DEBUG Processing 184/653 atomic regions from SNP 55083 to 55684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,631 DEBUG Processing 401/862 atomic regions from SNP 120128 to 120728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,643 DEBUG Processing 309/1028 atomic regions from SNP 92476 to 93076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,718 DEBUG Processing 278/1138 atomic regions from SNP 83170 to 83770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,816 DEBUG Processing 353/477 atomic regions from SNP 105752 to 106352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,822 DEBUG Processing 185/653 atomic regions from SNP 55384 to 55984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,836 DEBUG Processing 378/910 atomic regions from SNP 113166 to 113766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,866 DEBUG Processing 402/862 atomic regions from SNP 120428 to 121028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,887 DEBUG Processing 310/1028 atomic regions from SNP 92776 to 93376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,963 DEBUG Processing 279/1138 atomic regions from SNP 83470 to 84070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,033 DEBUG Processing 186/653 atomic regions from SNP 55684 to 56284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,037 DEBUG Processing 354/477 atomic regions from SNP 106052 to 106652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,081 DEBUG Processing 379/910 atomic regions from SNP 113466 to 114066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,096 DEBUG Processing 403/862 atomic regions from SNP 120728 to 121328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,129 DEBUG Processing 311/1028 atomic regions from SNP 93076 to 93676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,208 DEBUG Processing 280/1138 atomic regions from SNP 83770 to 84370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,247 DEBUG Processing 187/653 atomic regions from SNP 55984 to 56584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,247 DEBUG Processing 355/477 atomic regions from SNP 106352 to 106952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,310 DEBUG Processing 380/910 atomic regions from SNP 113766 to 114366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,313 DEBUG Processing 404/862 atomic regions from SNP 121028 to 121628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,369 DEBUG Processing 312/1028 atomic regions from SNP 93376 to 93976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,452 DEBUG Processing 281/1138 atomic regions from SNP 84070 to 84670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,460 DEBUG Processing 356/477 atomic regions from SNP 106652 to 107252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,465 DEBUG Processing 188/653 atomic regions from SNP 56284 to 56884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,528 DEBUG Processing 405/862 atomic regions from SNP 121328 to 121928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,536 DEBUG Processing 381/910 atomic regions from SNP 114066 to 114666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,609 DEBUG Processing 313/1028 atomic regions from SNP 93676 to 94276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,684 DEBUG Processing 189/653 atomic regions from SNP 56584 to 57184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,696 DEBUG Processing 357/477 atomic regions from SNP 106952 to 107552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,705 DEBUG Processing 282/1138 atomic regions from SNP 84370 to 84970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,743 DEBUG Processing 406/862 atomic regions from SNP 121628 to 122228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,758 DEBUG Processing 382/910 atomic regions from SNP 114366 to 114966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,843 DEBUG Processing 314/1028 atomic regions from SNP 93976 to 94576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,899 DEBUG Processing 190/653 atomic regions from SNP 56884 to 57484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,939 DEBUG Processing 358/477 atomic regions from SNP 107252 to 107852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,952 DEBUG Processing 283/1138 atomic regions from SNP 84670 to 85270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,979 DEBUG Processing 407/862 atomic regions from SNP 121928 to 122528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,983 DEBUG Processing 383/910 atomic regions from SNP 114666 to 115266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,080 DEBUG Processing 315/1028 atomic regions from SNP 94276 to 94876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,113 DEBUG Processing 191/653 atomic regions from SNP 57184 to 57784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,163 DEBUG Processing 359/477 atomic regions from SNP 107552 to 108152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,200 DEBUG Processing 284/1138 atomic regions from SNP 84970 to 85570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,208 DEBUG Processing 384/910 atomic regions from SNP 114966 to 115566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,210 DEBUG Processing 408/862 atomic regions from SNP 122228 to 122828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,318 DEBUG Processing 316/1028 atomic regions from SNP 94576 to 95176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,331 DEBUG Processing 192/653 atomic regions from SNP 57484 to 58084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,378 DEBUG Processing 360/477 atomic regions from SNP 107852 to 108452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,423 DEBUG Processing 409/862 atomic regions from SNP 122528 to 123128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,430 DEBUG Processing 385/910 atomic regions from SNP 115266 to 115866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,453 DEBUG Processing 285/1138 atomic regions from SNP 85270 to 85870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,544 DEBUG Processing 193/653 atomic regions from SNP 57784 to 58384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,555 DEBUG Processing 317/1028 atomic regions from SNP 94876 to 95476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,592 DEBUG Processing 361/477 atomic regions from SNP 108152 to 108752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,637 DEBUG Processing 410/862 atomic regions from SNP 122828 to 123428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,652 DEBUG Processing 386/910 atomic regions from SNP 115566 to 116166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,725 DEBUG Processing 286/1138 atomic regions from SNP 85570 to 86170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,759 DEBUG Processing 194/653 atomic regions from SNP 58084 to 58684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,794 DEBUG Processing 318/1028 atomic regions from SNP 95176 to 95776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,821 DEBUG Processing 362/477 atomic regions from SNP 108452 to 109052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,849 DEBUG Processing 411/862 atomic regions from SNP 123128 to 123728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,875 DEBUG Processing 387/910 atomic regions from SNP 115866 to 116466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,973 DEBUG Processing 195/653 atomic regions from SNP 58384 to 58984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,984 DEBUG Processing 287/1138 atomic regions from SNP 85870 to 86470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,033 DEBUG Processing 319/1028 atomic regions from SNP 95476 to 96076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,058 DEBUG Processing 363/477 atomic regions from SNP 108752 to 109352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,062 DEBUG Processing 412/862 atomic regions from SNP 123428 to 124028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,094 DEBUG Processing 388/910 atomic regions from SNP 116166 to 116766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,187 DEBUG Processing 196/653 atomic regions from SNP 58684 to 59284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,252 DEBUG Processing 288/1138 atomic regions from SNP 86170 to 86770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,276 DEBUG Processing 320/1028 atomic regions from SNP 95776 to 96376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,277 DEBUG Processing 413/862 atomic regions from SNP 123728 to 124328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,280 DEBUG Processing 364/477 atomic regions from SNP 109052 to 109652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,315 DEBUG Processing 389/910 atomic regions from SNP 116466 to 117066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,403 DEBUG Processing 197/653 atomic regions from SNP 58984 to 59584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,492 DEBUG Processing 365/477 atomic regions from SNP 109352 to 109952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,494 DEBUG Processing 414/862 atomic regions from SNP 124028 to 124628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,519 DEBUG Processing 321/1028 atomic regions from SNP 96076 to 96676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,525 DEBUG Processing 289/1138 atomic regions from SNP 86470 to 87070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,537 DEBUG Processing 390/910 atomic regions from SNP 116766 to 117366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,616 DEBUG Processing 198/653 atomic regions from SNP 59284 to 59884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,700 DEBUG Processing 366/477 atomic regions from SNP 109652 to 110252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,711 DEBUG Processing 415/862 atomic regions from SNP 124328 to 124928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,762 DEBUG Processing 391/910 atomic regions from SNP 117066 to 117666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,766 DEBUG Processing 322/1028 atomic regions from SNP 96376 to 96976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,795 DEBUG Processing 290/1138 atomic regions from SNP 86770 to 87370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,827 DEBUG Processing 199/653 atomic regions from SNP 59584 to 60184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,909 DEBUG Processing 367/477 atomic regions from SNP 109952 to 110552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,925 DEBUG Processing 416/862 atomic regions from SNP 124628 to 125228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,988 DEBUG Processing 392/910 atomic regions from SNP 117366 to 117966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,024 DEBUG Processing 323/1028 atomic regions from SNP 96676 to 97276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,040 DEBUG Processing 200/653 atomic regions from SNP 59884 to 60484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,045 DEBUG Processing 291/1138 atomic regions from SNP 87070 to 87670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,113 DEBUG Processing 368/477 atomic regions from SNP 110252 to 110852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,135 DEBUG Processing 417/862 atomic regions from SNP 124928 to 125528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,214 DEBUG Processing 393/910 atomic regions from SNP 117666 to 118266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,253 DEBUG Processing 201/653 atomic regions from SNP 60184 to 60784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,263 DEBUG Processing 324/1028 atomic regions from SNP 96976 to 97576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,296 DEBUG Processing 292/1138 atomic regions from SNP 87370 to 87970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,320 DEBUG Processing 369/477 atomic regions from SNP 110552 to 111152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,346 DEBUG Processing 418/862 atomic regions from SNP 125228 to 125828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,438 DEBUG Processing 394/910 atomic regions from SNP 117966 to 118566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,471 DEBUG Processing 202/653 atomic regions from SNP 60484 to 61084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,502 DEBUG Processing 325/1028 atomic regions from SNP 97276 to 97876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,554 DEBUG Processing 293/1138 atomic regions from SNP 87670 to 88270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,555 DEBUG Processing 370/477 atomic regions from SNP 110852 to 111452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,557 DEBUG Processing 419/862 atomic regions from SNP 125528 to 126128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,660 DEBUG Processing 395/910 atomic regions from SNP 118266 to 118866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,686 DEBUG Processing 203/653 atomic regions from SNP 60784 to 61384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,743 DEBUG Processing 326/1028 atomic regions from SNP 97576 to 98176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,770 DEBUG Processing 420/862 atomic regions from SNP 125828 to 126428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,794 DEBUG Processing 371/477 atomic regions from SNP 111152 to 111752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,802 DEBUG Processing 294/1138 atomic regions from SNP 87970 to 88570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,883 DEBUG Processing 396/910 atomic regions from SNP 118566 to 119166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,898 DEBUG Processing 204/653 atomic regions from SNP 61084 to 61684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,980 DEBUG Processing 327/1028 atomic regions from SNP 97876 to 98476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,984 DEBUG Processing 421/862 atomic regions from SNP 126128 to 126728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,003 DEBUG Processing 372/477 atomic regions from SNP 111452 to 112052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,052 DEBUG Processing 295/1138 atomic regions from SNP 88270 to 88870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,105 DEBUG Processing 397/910 atomic regions from SNP 118866 to 119466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,111 DEBUG Processing 205/653 atomic regions from SNP 61384 to 61984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,196 DEBUG Processing 422/862 atomic regions from SNP 126428 to 127028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,211 DEBUG Processing 373/477 atomic regions from SNP 111752 to 112352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,218 DEBUG Processing 328/1028 atomic regions from SNP 98176 to 98776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,301 DEBUG Processing 296/1138 atomic regions from SNP 88570 to 89170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,324 DEBUG Processing 206/653 atomic regions from SNP 61684 to 62284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,328 DEBUG Processing 398/910 atomic regions from SNP 119166 to 119766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,408 DEBUG Processing 423/862 atomic regions from SNP 126728 to 127328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,418 DEBUG Processing 374/477 atomic regions from SNP 112052 to 112652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,456 DEBUG Processing 329/1028 atomic regions from SNP 98476 to 99076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,540 DEBUG Processing 207/653 atomic regions from SNP 61984 to 62584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,550 DEBUG Processing 297/1138 atomic regions from SNP 88870 to 89470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,552 DEBUG Processing 399/910 atomic regions from SNP 119466 to 120066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,622 DEBUG Processing 375/477 atomic regions from SNP 112352 to 112952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,622 DEBUG Processing 424/862 atomic regions from SNP 127028 to 127628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,692 DEBUG Processing 330/1028 atomic regions from SNP 98776 to 99376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,759 DEBUG Processing 208/653 atomic regions from SNP 62284 to 62884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,778 DEBUG Processing 400/910 atomic regions from SNP 119766 to 120366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,799 DEBUG Processing 298/1138 atomic regions from SNP 89170 to 89770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,829 DEBUG Processing 376/477 atomic regions from SNP 112652 to 113252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,858 DEBUG Processing 425/862 atomic regions from SNP 127328 to 127928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,929 DEBUG Processing 331/1028 atomic regions from SNP 99076 to 99676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,975 DEBUG Processing 209/653 atomic regions from SNP 62584 to 63184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,003 DEBUG Processing 401/910 atomic regions from SNP 120066 to 120666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,038 DEBUG Processing 377/477 atomic regions from SNP 112952 to 113552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,048 DEBUG Processing 299/1138 atomic regions from SNP 89470 to 90070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,092 DEBUG Processing 426/862 atomic regions from SNP 127628 to 128228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,168 DEBUG Processing 332/1028 atomic regions from SNP 99376 to 99976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,188 DEBUG Processing 210/653 atomic regions from SNP 62884 to 63484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,227 DEBUG Processing 402/910 atomic regions from SNP 120366 to 120966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,248 DEBUG Processing 378/477 atomic regions from SNP 113252 to 113852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,296 DEBUG Processing 300/1138 atomic regions from SNP 89770 to 90370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,319 DEBUG Processing 427/862 atomic regions from SNP 127928 to 128528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,401 DEBUG Processing 211/653 atomic regions from SNP 63184 to 63784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,406 DEBUG Processing 333/1028 atomic regions from SNP 99676 to 100276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,448 DEBUG Processing 403/910 atomic regions from SNP 120666 to 121266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,476 DEBUG Processing 379/477 atomic regions from SNP 113552 to 114152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,537 DEBUG Processing 428/862 atomic regions from SNP 128228 to 128828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,543 DEBUG Processing 301/1138 atomic regions from SNP 90070 to 90670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,615 DEBUG Processing 212/653 atomic regions from SNP 63484 to 64084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,644 DEBUG Processing 334/1028 atomic regions from SNP 99976 to 100576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,670 DEBUG Processing 404/910 atomic regions from SNP 120966 to 121566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,687 DEBUG Processing 380/477 atomic regions from SNP 113852 to 114452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,751 DEBUG Processing 429/862 atomic regions from SNP 128528 to 129128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,791 DEBUG Processing 302/1138 atomic regions from SNP 90370 to 90970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,828 DEBUG Processing 213/653 atomic regions from SNP 63784 to 64384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,882 DEBUG Processing 335/1028 atomic regions from SNP 100276 to 100876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,893 DEBUG Processing 405/910 atomic regions from SNP 121266 to 121866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,893 DEBUG Processing 381/477 atomic regions from SNP 114152 to 114752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,965 DEBUG Processing 430/862 atomic regions from SNP 128828 to 129428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,042 DEBUG Processing 214/653 atomic regions from SNP 64084 to 64684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,068 DEBUG Processing 303/1138 atomic regions from SNP 90670 to 91270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,101 DEBUG Processing 382/477 atomic regions from SNP 114452 to 115052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,116 DEBUG Processing 406/910 atomic regions from SNP 121566 to 122166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,120 DEBUG Processing 336/1028 atomic regions from SNP 100576 to 101176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,174 DEBUG Processing 431/862 atomic regions from SNP 129128 to 129728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,253 DEBUG Processing 215/653 atomic regions from SNP 64384 to 64984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,309 DEBUG Processing 383/477 atomic regions from SNP 114752 to 115352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,340 DEBUG Processing 407/910 atomic regions from SNP 121866 to 122466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,349 DEBUG Processing 304/1138 atomic regions from SNP 90970 to 91570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,359 DEBUG Processing 337/1028 atomic regions from SNP 100876 to 101476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,386 DEBUG Processing 432/862 atomic regions from SNP 129428 to 130028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,465 DEBUG Processing 216/653 atomic regions from SNP 64684 to 65284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,531 DEBUG Processing 384/477 atomic regions from SNP 115052 to 115652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,564 DEBUG Processing 408/910 atomic regions from SNP 122166 to 122766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,601 DEBUG Processing 433/862 atomic regions from SNP 129728 to 130328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,601 DEBUG Processing 305/1138 atomic regions from SNP 91270 to 91870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,603 DEBUG Processing 338/1028 atomic regions from SNP 101176 to 101776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,675 DEBUG Processing 217/653 atomic regions from SNP 64984 to 65584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,761 DEBUG Processing 385/477 atomic regions from SNP 115352 to 115952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,788 DEBUG Processing 409/910 atomic regions from SNP 122466 to 123066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,820 DEBUG Processing 434/862 atomic regions from SNP 130028 to 130628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,848 DEBUG Processing 339/1028 atomic regions from SNP 101476 to 102076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,851 DEBUG Processing 306/1138 atomic regions from SNP 91570 to 92170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,890 DEBUG Processing 218/653 atomic regions from SNP 65284 to 65884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,969 DEBUG Processing 386/477 atomic regions from SNP 115652 to 116252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,010 DEBUG Processing 410/910 atomic regions from SNP 122766 to 123366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,038 DEBUG Processing 435/862 atomic regions from SNP 130328 to 130928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,090 DEBUG Processing 340/1028 atomic regions from SNP 101776 to 102376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,100 DEBUG Processing 307/1138 atomic regions from SNP 91870 to 92470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,107 DEBUG Processing 219/653 atomic regions from SNP 65584 to 66184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,174 DEBUG Processing 387/477 atomic regions from SNP 115952 to 116552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,232 DEBUG Processing 411/910 atomic regions from SNP 123066 to 123666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,255 DEBUG Processing 436/862 atomic regions from SNP 130628 to 131228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,323 DEBUG Processing 220/653 atomic regions from SNP 65884 to 66484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,347 DEBUG Processing 341/1028 atomic regions from SNP 102076 to 102676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,359 DEBUG Processing 308/1138 atomic regions from SNP 92170 to 92770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,386 DEBUG Processing 388/477 atomic regions from SNP 116252 to 116852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,453 DEBUG Processing 412/910 atomic regions from SNP 123366 to 123966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,470 DEBUG Processing 437/862 atomic regions from SNP 130928 to 131528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,535 DEBUG Processing 221/653 atomic regions from SNP 66184 to 66784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,588 DEBUG Processing 342/1028 atomic regions from SNP 102376 to 102976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,599 DEBUG Processing 389/477 atomic regions from SNP 116552 to 117152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,606 DEBUG Processing 309/1138 atomic regions from SNP 92470 to 93070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,675 DEBUG Processing 413/910 atomic regions from SNP 123666 to 124266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,683 DEBUG Processing 438/862 atomic regions from SNP 131228 to 131828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,745 DEBUG Processing 222/653 atomic regions from SNP 66484 to 67084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,811 DEBUG Processing 390/477 atomic regions from SNP 116852 to 117452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,828 DEBUG Processing 343/1028 atomic regions from SNP 102676 to 103276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,856 DEBUG Processing 310/1138 atomic regions from SNP 92770 to 93370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,896 DEBUG Processing 414/910 atomic regions from SNP 123966 to 124566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,899 DEBUG Processing 439/862 atomic regions from SNP 131528 to 132128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,961 DEBUG Processing 223/653 atomic regions from SNP 66784 to 67384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,020 DEBUG Processing 391/477 atomic regions from SNP 117152 to 117752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,069 DEBUG Processing 344/1028 atomic regions from SNP 102976 to 103576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,106 DEBUG Processing 311/1138 atomic regions from SNP 93070 to 93670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,114 DEBUG Processing 440/862 atomic regions from SNP 131828 to 132428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,119 DEBUG Processing 415/910 atomic regions from SNP 124266 to 124866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,173 DEBUG Processing 224/653 atomic regions from SNP 67084 to 67684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,229 DEBUG Processing 392/477 atomic regions from SNP 117452 to 118052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,308 DEBUG Processing 345/1028 atomic regions from SNP 103276 to 103876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,330 DEBUG Processing 441/862 atomic regions from SNP 132128 to 132728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,343 DEBUG Processing 416/910 atomic regions from SNP 124566 to 125166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,354 DEBUG Processing 312/1138 atomic regions from SNP 93370 to 93970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,385 DEBUG Processing 225/653 atomic regions from SNP 67384 to 67984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,438 DEBUG Processing 393/477 atomic regions from SNP 117752 to 118352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,547 DEBUG Processing 442/862 atomic regions from SNP 132428 to 133028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,548 DEBUG Processing 346/1028 atomic regions from SNP 103576 to 104176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,567 DEBUG Processing 417/910 atomic regions from SNP 124866 to 125466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,595 DEBUG Processing 226/653 atomic regions from SNP 67684 to 68284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,603 DEBUG Processing 313/1138 atomic regions from SNP 93670 to 94270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,645 DEBUG Processing 394/477 atomic regions from SNP 118052 to 118652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,765 DEBUG Processing 443/862 atomic regions from SNP 132728 to 133328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,788 DEBUG Processing 347/1028 atomic regions from SNP 103876 to 104476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,791 DEBUG Processing 418/910 atomic regions from SNP 125166 to 125766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,810 DEBUG Processing 227/653 atomic regions from SNP 67984 to 68584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,853 DEBUG Processing 314/1138 atomic regions from SNP 93970 to 94570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,855 DEBUG Processing 395/477 atomic regions from SNP 118352 to 118952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,983 DEBUG Processing 444/862 atomic regions from SNP 133028 to 133628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,016 DEBUG Processing 419/910 atomic regions from SNP 125466 to 126066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,025 DEBUG Processing 348/1028 atomic regions from SNP 104176 to 104776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,026 DEBUG Processing 228/653 atomic regions from SNP 68284 to 68884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,070 DEBUG Processing 396/477 atomic regions from SNP 118652 to 119252 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,105 DEBUG Processing 315/1138 atomic regions from SNP 94270 to 94870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,198 DEBUG Processing 445/862 atomic regions from SNP 133328 to 133928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,241 DEBUG Processing 420/910 atomic regions from SNP 125766 to 126366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,248 DEBUG Processing 229/653 atomic regions from SNP 68584 to 69184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,265 DEBUG Processing 349/1028 atomic regions from SNP 104476 to 105076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,280 DEBUG Processing 397/477 atomic regions from SNP 118952 to 119552 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,353 DEBUG Processing 316/1138 atomic regions from SNP 94570 to 95170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,412 DEBUG Processing 446/862 atomic regions from SNP 133628 to 134228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,459 DEBUG Processing 230/653 atomic regions from SNP 68884 to 69484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,464 DEBUG Processing 421/910 atomic regions from SNP 126066 to 126666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,488 DEBUG Processing 398/477 atomic regions from SNP 119252 to 119852 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,503 DEBUG Processing 350/1028 atomic regions from SNP 104776 to 105376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,599 DEBUG Processing 317/1138 atomic regions from SNP 94870 to 95470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,627 DEBUG Processing 447/862 atomic regions from SNP 133928 to 134528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,672 DEBUG Processing 231/653 atomic regions from SNP 69184 to 69784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,688 DEBUG Processing 422/910 atomic regions from SNP 126366 to 126966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,694 DEBUG Processing 399/477 atomic regions from SNP 119552 to 120152 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,742 DEBUG Processing 351/1028 atomic regions from SNP 105076 to 105676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,839 DEBUG Processing 448/862 atomic regions from SNP 134228 to 134828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,846 DEBUG Processing 318/1138 atomic regions from SNP 95170 to 95770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,885 DEBUG Processing 232/653 atomic regions from SNP 69484 to 70084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,901 DEBUG Processing 400/477 atomic regions from SNP 119852 to 120452 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,913 DEBUG Processing 423/910 atomic regions from SNP 126666 to 127266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,979 DEBUG Processing 352/1028 atomic regions from SNP 105376 to 105976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,053 DEBUG Processing 449/862 atomic regions from SNP 134528 to 135128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,093 DEBUG Processing 319/1138 atomic regions from SNP 95470 to 96070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,099 DEBUG Processing 233/653 atomic regions from SNP 69784 to 70384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,110 DEBUG Processing 401/477 atomic regions from SNP 120152 to 120752 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,137 DEBUG Processing 424/910 atomic regions from SNP 126966 to 127566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,216 DEBUG Processing 353/1028 atomic regions from SNP 105676 to 106276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,266 DEBUG Processing 450/862 atomic regions from SNP 134828 to 135428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,313 DEBUG Processing 234/653 atomic regions from SNP 70084 to 70684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,319 DEBUG Processing 402/477 atomic regions from SNP 120452 to 121052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,340 DEBUG Processing 320/1138 atomic regions from SNP 95770 to 96370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,362 DEBUG Processing 425/910 atomic regions from SNP 127266 to 127866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,453 DEBUG Processing 354/1028 atomic regions from SNP 105976 to 106576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,480 DEBUG Processing 451/862 atomic regions from SNP 135128 to 135728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,526 DEBUG Processing 235/653 atomic regions from SNP 70384 to 70984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,527 DEBUG Processing 403/477 atomic regions from SNP 120752 to 121352 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,584 DEBUG Processing 426/910 atomic regions from SNP 127566 to 128166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,596 DEBUG Processing 321/1138 atomic regions from SNP 96070 to 96670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,691 DEBUG Processing 355/1028 atomic regions from SNP 106276 to 106876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,691 DEBUG Processing 452/862 atomic regions from SNP 135428 to 136028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,736 DEBUG Processing 404/477 atomic regions from SNP 121052 to 121652 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,738 DEBUG Processing 236/653 atomic regions from SNP 70684 to 71284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,808 DEBUG Processing 427/910 atomic regions from SNP 127866 to 128466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,851 DEBUG Processing 322/1138 atomic regions from SNP 96370 to 96970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,904 DEBUG Processing 453/862 atomic regions from SNP 135728 to 136328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,929 DEBUG Processing 356/1028 atomic regions from SNP 106576 to 107176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,946 DEBUG Processing 405/477 atomic regions from SNP 121352 to 121952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,951 DEBUG Processing 237/653 atomic regions from SNP 70984 to 71584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,033 DEBUG Processing 428/910 atomic regions from SNP 128166 to 128766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,118 DEBUG Processing 454/862 atomic regions from SNP 136028 to 136628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,120 DEBUG Processing 323/1138 atomic regions from SNP 96670 to 97270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,157 DEBUG Processing 406/477 atomic regions from SNP 121652 to 122252 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,165 DEBUG Processing 238/653 atomic regions from SNP 71284 to 71884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,168 DEBUG Processing 357/1028 atomic regions from SNP 106876 to 107476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,258 DEBUG Processing 429/910 atomic regions from SNP 128466 to 129066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,335 DEBUG Processing 455/862 atomic regions from SNP 136328 to 136928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,369 DEBUG Processing 407/477 atomic regions from SNP 121952 to 122552 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,380 DEBUG Processing 239/653 atomic regions from SNP 71584 to 72184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,392 DEBUG Processing 324/1138 atomic regions from SNP 96970 to 97570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,409 DEBUG Processing 358/1028 atomic regions from SNP 107176 to 107776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,479 DEBUG Processing 430/910 atomic regions from SNP 128766 to 129366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,551 DEBUG Processing 456/862 atomic regions from SNP 136628 to 137228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,579 DEBUG Processing 408/477 atomic regions from SNP 122252 to 122852 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,594 DEBUG Processing 240/653 atomic regions from SNP 71884 to 72484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,649 DEBUG Processing 359/1028 atomic regions from SNP 107476 to 108076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,655 DEBUG Processing 325/1138 atomic regions from SNP 97270 to 97870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,702 DEBUG Processing 431/910 atomic regions from SNP 129066 to 129666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,764 DEBUG Processing 457/862 atomic regions from SNP 136928 to 137528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,788 DEBUG Processing 409/477 atomic regions from SNP 122552 to 123152 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,808 DEBUG Processing 241/653 atomic regions from SNP 72184 to 72784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,891 DEBUG Processing 360/1028 atomic regions from SNP 107776 to 108376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,921 DEBUG Processing 326/1138 atomic regions from SNP 97570 to 98170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,923 DEBUG Processing 432/910 atomic regions from SNP 129366 to 129966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,976 DEBUG Processing 458/862 atomic regions from SNP 137228 to 137828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,999 DEBUG Processing 410/477 atomic regions from SNP 122852 to 123452 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,022 DEBUG Processing 242/653 atomic regions from SNP 72484 to 73084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,139 DEBUG Processing 361/1028 atomic regions from SNP 108076 to 108676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,152 DEBUG Processing 433/910 atomic regions from SNP 129666 to 130266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,189 DEBUG Processing 327/1138 atomic regions from SNP 97870 to 98470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,189 DEBUG Processing 459/862 atomic regions from SNP 137528 to 138128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,237 DEBUG Processing 243/653 atomic regions from SNP 72784 to 73384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,244 DEBUG Processing 411/477 atomic regions from SNP 123152 to 123752 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,380 DEBUG Processing 434/910 atomic regions from SNP 129966 to 130566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,380 DEBUG Processing 362/1028 atomic regions from SNP 108376 to 108976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,405 DEBUG Processing 460/862 atomic regions from SNP 137828 to 138428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,451 DEBUG Processing 244/653 atomic regions from SNP 73084 to 73684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,469 DEBUG Processing 328/1138 atomic regions from SNP 98170 to 98770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,472 DEBUG Processing 412/477 atomic regions from SNP 123452 to 124052 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,605 DEBUG Processing 435/910 atomic regions from SNP 130266 to 130866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,619 DEBUG Processing 461/862 atomic regions from SNP 138128 to 138728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,621 DEBUG Processing 363/1028 atomic regions from SNP 108676 to 109276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,664 DEBUG Processing 245/653 atomic regions from SNP 73384 to 73984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,683 DEBUG Processing 413/477 atomic regions from SNP 123752 to 124352 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,747 DEBUG Processing 329/1138 atomic regions from SNP 98470 to 99070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,832 DEBUG Processing 436/910 atomic regions from SNP 130566 to 131166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,833 DEBUG Processing 462/862 atomic regions from SNP 138428 to 139028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,859 DEBUG Processing 364/1028 atomic regions from SNP 108976 to 109576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,879 DEBUG Processing 246/653 atomic regions from SNP 73684 to 74284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,892 DEBUG Processing 414/477 atomic regions from SNP 124052 to 124652 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,023 DEBUG Processing 330/1138 atomic regions from SNP 98770 to 99370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,050 DEBUG Processing 463/862 atomic regions from SNP 138728 to 139328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,057 DEBUG Processing 437/910 atomic regions from SNP 130866 to 131466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,096 DEBUG Processing 365/1028 atomic regions from SNP 109276 to 109876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,098 DEBUG Processing 247/653 atomic regions from SNP 73984 to 74584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,104 DEBUG Processing 415/477 atomic regions from SNP 124352 to 124952 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,264 DEBUG Processing 464/862 atomic regions from SNP 139028 to 139628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,294 DEBUG Processing 331/1138 atomic regions from SNP 99070 to 99670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,306 DEBUG Processing 438/910 atomic regions from SNP 131166 to 131766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,317 DEBUG Processing 416/477 atomic regions from SNP 124652 to 125252 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,336 DEBUG Processing 366/1028 atomic regions from SNP 109576 to 110176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,337 DEBUG Processing 248/653 atomic regions from SNP 74284 to 74884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,478 DEBUG Processing 465/862 atomic regions from SNP 139328 to 139928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,529 DEBUG Processing 417/477 atomic regions from SNP 124952 to 125552 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,537 DEBUG Processing 439/910 atomic regions from SNP 131466 to 132066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,566 DEBUG Processing 332/1138 atomic regions from SNP 99370 to 99970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,577 DEBUG Processing 367/1028 atomic regions from SNP 109876 to 110476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,590 DEBUG Processing 249/653 atomic regions from SNP 74584 to 75184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,692 DEBUG Processing 466/862 atomic regions from SNP 139628 to 140228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,737 DEBUG Processing 418/477 atomic regions from SNP 125252 to 125852 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,783 DEBUG Processing 440/910 atomic regions from SNP 131766 to 132366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,817 DEBUG Processing 250/653 atomic regions from SNP 74884 to 75484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,820 DEBUG Processing 368/1028 atomic regions from SNP 110176 to 110776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,847 DEBUG Processing 333/1138 atomic regions from SNP 99670 to 100270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,903 DEBUG Processing 467/862 atomic regions from SNP 139928 to 140528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,944 DEBUG Processing 419/477 atomic regions from SNP 125552 to 126152 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,004 DEBUG Processing 441/910 atomic regions from SNP 132066 to 132666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,028 DEBUG Processing 251/653 atomic regions from SNP 75184 to 75784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,060 DEBUG Processing 369/1028 atomic regions from SNP 110476 to 111076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,117 DEBUG Processing 468/862 atomic regions from SNP 140228 to 140828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,122 DEBUG Processing 334/1138 atomic regions from SNP 99970 to 100570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,150 DEBUG Processing 420/477 atomic regions from SNP 125852 to 126452 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,224 DEBUG Processing 442/910 atomic regions from SNP 132366 to 132966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,237 DEBUG Processing 252/653 atomic regions from SNP 75484 to 76084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,301 DEBUG Processing 370/1028 atomic regions from SNP 110776 to 111376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,332 DEBUG Processing 469/862 atomic regions from SNP 140528 to 141128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,359 DEBUG Processing 421/477 atomic regions from SNP 126152 to 126752 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,374 DEBUG Processing 335/1138 atomic regions from SNP 100270 to 100870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,443 DEBUG Processing 443/910 atomic regions from SNP 132666 to 133266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,446 DEBUG Processing 253/653 atomic regions from SNP 75784 to 76384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,542 DEBUG Processing 371/1028 atomic regions from SNP 111076 to 111676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,547 DEBUG Processing 470/862 atomic regions from SNP 140828 to 141428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,569 DEBUG Processing 422/477 atomic regions from SNP 126452 to 127052 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,632 DEBUG Processing 336/1138 atomic regions from SNP 100570 to 101170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,658 DEBUG Processing 254/653 atomic regions from SNP 76084 to 76684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,666 DEBUG Processing 444/910 atomic regions from SNP 132966 to 133566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,762 DEBUG Processing 471/862 atomic regions from SNP 141128 to 141728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,778 DEBUG Processing 423/477 atomic regions from SNP 126752 to 127352 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,780 DEBUG Processing 372/1028 atomic regions from SNP 111376 to 111976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,870 DEBUG Processing 255/653 atomic regions from SNP 76384 to 76984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,880 DEBUG Processing 337/1138 atomic regions from SNP 100870 to 101470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,889 DEBUG Processing 445/910 atomic regions from SNP 133266 to 133866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,976 DEBUG Processing 472/862 atomic regions from SNP 141428 to 142028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,987 DEBUG Processing 424/477 atomic regions from SNP 127052 to 127652 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,017 DEBUG Processing 373/1028 atomic regions from SNP 111676 to 112276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,085 DEBUG Processing 256/653 atomic regions from SNP 76684 to 77284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,114 DEBUG Processing 446/910 atomic regions from SNP 133566 to 134166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,126 DEBUG Processing 338/1138 atomic regions from SNP 101170 to 101770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,193 DEBUG Processing 473/862 atomic regions from SNP 141728 to 142328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,197 DEBUG Processing 425/477 atomic regions from SNP 127352 to 127952 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,252 DEBUG Processing 374/1028 atomic regions from SNP 111976 to 112576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,302 DEBUG Processing 257/653 atomic regions from SNP 76984 to 77584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,338 DEBUG Processing 447/910 atomic regions from SNP 133866 to 134466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,377 DEBUG Processing 339/1138 atomic regions from SNP 101470 to 102070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,407 DEBUG Processing 426/477 atomic regions from SNP 127652 to 128252 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,408 DEBUG Processing 474/862 atomic regions from SNP 142028 to 142628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,496 DEBUG Processing 375/1028 atomic regions from SNP 112276 to 112876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,512 DEBUG Processing 258/653 atomic regions from SNP 77284 to 77884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,561 DEBUG Processing 448/910 atomic regions from SNP 134166 to 134766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,620 DEBUG Processing 427/477 atomic regions from SNP 127952 to 128552 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,625 DEBUG Processing 475/862 atomic regions from SNP 142328 to 142928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,628 DEBUG Processing 340/1138 atomic regions from SNP 101770 to 102370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,722 DEBUG Processing 259/653 atomic regions from SNP 77584 to 78184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,730 DEBUG Processing 376/1028 atomic regions from SNP 112576 to 113176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,786 DEBUG Processing 449/910 atomic regions from SNP 134466 to 135066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,832 DEBUG Processing 428/477 atomic regions from SNP 128252 to 128852 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,840 DEBUG Processing 476/862 atomic regions from SNP 142628 to 143228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,877 DEBUG Processing 341/1138 atomic regions from SNP 102070 to 102670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,931 DEBUG Processing 260/653 atomic regions from SNP 77884 to 78484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,963 DEBUG Processing 377/1028 atomic regions from SNP 112876 to 113476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,012 DEBUG Processing 450/910 atomic regions from SNP 134766 to 135366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,042 DEBUG Processing 429/477 atomic regions from SNP 128552 to 129152 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,056 DEBUG Processing 477/862 atomic regions from SNP 142928 to 143528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,126 DEBUG Processing 342/1138 atomic regions from SNP 102370 to 102970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,142 DEBUG Processing 261/653 atomic regions from SNP 78184 to 78784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,199 DEBUG Processing 378/1028 atomic regions from SNP 113176 to 113776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,237 DEBUG Processing 451/910 atomic regions from SNP 135066 to 135666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,253 DEBUG Processing 430/477 atomic regions from SNP 128852 to 129452 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,272 DEBUG Processing 478/862 atomic regions from SNP 143228 to 143828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,352 DEBUG Processing 262/653 atomic regions from SNP 78484 to 79084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,372 DEBUG Processing 343/1138 atomic regions from SNP 102670 to 103270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,438 DEBUG Processing 379/1028 atomic regions from SNP 113476 to 114076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,462 DEBUG Processing 452/910 atomic regions from SNP 135366 to 135966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,464 DEBUG Processing 431/477 atomic regions from SNP 129152 to 129752 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,486 DEBUG Processing 479/862 atomic regions from SNP 143528 to 144128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,561 DEBUG Processing 263/653 atomic regions from SNP 78784 to 79384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,616 DEBUG Processing 344/1138 atomic regions from SNP 102970 to 103570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,676 DEBUG Processing 432/477 atomic regions from SNP 129452 to 130052 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,682 DEBUG Processing 380/1028 atomic regions from SNP 113776 to 114376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,689 DEBUG Processing 453/910 atomic regions from SNP 135666 to 136266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,702 DEBUG Processing 480/862 atomic regions from SNP 143828 to 144428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,771 DEBUG Processing 264/653 atomic regions from SNP 79084 to 79684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,863 DEBUG Processing 345/1138 atomic regions from SNP 103270 to 103870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,888 DEBUG Processing 433/477 atomic regions from SNP 129752 to 130352 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,916 DEBUG Processing 454/910 atomic regions from SNP 135966 to 136566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,917 DEBUG Processing 481/862 atomic regions from SNP 144128 to 144728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,925 DEBUG Processing 381/1028 atomic regions from SNP 114076 to 114676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,982 DEBUG Processing 265/653 atomic regions from SNP 79384 to 79984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,098 DEBUG Processing 434/477 atomic regions from SNP 130052 to 130652 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,112 DEBUG Processing 346/1138 atomic regions from SNP 103570 to 104170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,137 DEBUG Processing 482/862 atomic regions from SNP 144428 to 145028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,143 DEBUG Processing 455/910 atomic regions from SNP 136266 to 136866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,170 DEBUG Processing 382/1028 atomic regions from SNP 114376 to 114976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,194 DEBUG Processing 266/653 atomic regions from SNP 79684 to 80284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,305 DEBUG Processing 435/477 atomic regions from SNP 130352 to 130952 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,358 DEBUG Processing 483/862 atomic regions from SNP 144728 to 145328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,364 DEBUG Processing 347/1138 atomic regions from SNP 103870 to 104470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,371 DEBUG Processing 456/910 atomic regions from SNP 136566 to 137166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,408 DEBUG Processing 267/653 atomic regions from SNP 79984 to 80584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,414 DEBUG Processing 383/1028 atomic regions from SNP 114676 to 115276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,510 DEBUG Processing 436/477 atomic regions from SNP 130652 to 131252 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,578 DEBUG Processing 484/862 atomic regions from SNP 145028 to 145628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,598 DEBUG Processing 457/910 atomic regions from SNP 136866 to 137466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,616 DEBUG Processing 348/1138 atomic regions from SNP 104170 to 104770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,623 DEBUG Processing 268/653 atomic regions from SNP 80284 to 80884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,654 DEBUG Processing 384/1028 atomic regions from SNP 114976 to 115576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,717 DEBUG Processing 437/477 atomic regions from SNP 130952 to 131552 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,793 DEBUG Processing 485/862 atomic regions from SNP 145328 to 145928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,824 DEBUG Processing 458/910 atomic regions from SNP 137166 to 137766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,836 DEBUG Processing 269/653 atomic regions from SNP 80584 to 81184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,881 DEBUG Processing 349/1138 atomic regions from SNP 104470 to 105070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,893 DEBUG Processing 385/1028 atomic regions from SNP 115276 to 115876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,929 DEBUG Processing 438/477 atomic regions from SNP 131252 to 131852 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,005 DEBUG Processing 486/862 atomic regions from SNP 145628 to 146228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,046 DEBUG Processing 459/910 atomic regions from SNP 137466 to 138066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,048 DEBUG Processing 270/653 atomic regions from SNP 80884 to 81484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,132 DEBUG Processing 386/1028 atomic regions from SNP 115576 to 116176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,143 DEBUG Processing 439/477 atomic regions from SNP 131552 to 132152 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,162 DEBUG Processing 350/1138 atomic regions from SNP 104770 to 105370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,218 DEBUG Processing 487/862 atomic regions from SNP 145928 to 146528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,256 DEBUG Processing 271/653 atomic regions from SNP 81184 to 81784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,268 DEBUG Processing 460/910 atomic regions from SNP 137766 to 138366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,356 DEBUG Processing 440/477 atomic regions from SNP 131852 to 132452 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,373 DEBUG Processing 387/1028 atomic regions from SNP 115876 to 116476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,434 DEBUG Processing 488/862 atomic regions from SNP 146228 to 146828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,438 DEBUG Processing 351/1138 atomic regions from SNP 105070 to 105670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,465 DEBUG Processing 272/653 atomic regions from SNP 81484 to 82084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,488 DEBUG Processing 461/910 atomic regions from SNP 138066 to 138666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,567 DEBUG Processing 441/477 atomic regions from SNP 132152 to 132752 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,608 DEBUG Processing 388/1028 atomic regions from SNP 116176 to 116776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,651 DEBUG Processing 489/862 atomic regions from SNP 146528 to 147128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,675 DEBUG Processing 273/653 atomic regions from SNP 81784 to 82384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,710 DEBUG Processing 462/910 atomic regions from SNP 138366 to 138966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,716 DEBUG Processing 352/1138 atomic regions from SNP 105370 to 105970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,776 DEBUG Processing 442/477 atomic regions from SNP 132452 to 133052 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,846 DEBUG Processing 389/1028 atomic regions from SNP 116476 to 117076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,864 DEBUG Processing 490/862 atomic regions from SNP 146828 to 147428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,890 DEBUG Processing 274/653 atomic regions from SNP 82084 to 82684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,934 DEBUG Processing 463/910 atomic regions from SNP 138666 to 139266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,983 DEBUG Processing 353/1138 atomic regions from SNP 105670 to 106270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,986 DEBUG Processing 443/477 atomic regions from SNP 132752 to 133352 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,085 DEBUG Processing 390/1028 atomic regions from SNP 116776 to 117376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,085 DEBUG Processing 491/862 atomic regions from SNP 147128 to 147728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,101 DEBUG Processing 275/653 atomic regions from SNP 82384 to 82984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,173 DEBUG Processing 464/910 atomic regions from SNP 138966 to 139566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,196 DEBUG Processing 444/477 atomic regions from SNP 133052 to 133652 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,231 DEBUG Processing 354/1138 atomic regions from SNP 105970 to 106570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,306 DEBUG Processing 492/862 atomic regions from SNP 147428 to 148028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,312 DEBUG Processing 276/653 atomic regions from SNP 82684 to 83284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,320 DEBUG Processing 391/1028 atomic regions from SNP 117076 to 117676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,408 DEBUG Processing 445/477 atomic regions from SNP 133352 to 133952 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,412 DEBUG Processing 465/910 atomic regions from SNP 139266 to 139866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,481 DEBUG Processing 355/1138 atomic regions from SNP 106270 to 106870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,519 DEBUG Processing 493/862 atomic regions from SNP 147728 to 148328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,519 DEBUG Processing 277/653 atomic regions from SNP 82984 to 83584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,556 DEBUG Processing 392/1028 atomic regions from SNP 117376 to 117976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,619 DEBUG Processing 446/477 atomic regions from SNP 133652 to 134252 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,656 DEBUG Processing 466/910 atomic regions from SNP 139566 to 140166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,731 DEBUG Processing 278/653 atomic regions from SNP 83284 to 83884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,732 DEBUG Processing 494/862 atomic regions from SNP 148028 to 148628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,732 DEBUG Processing 356/1138 atomic regions from SNP 106570 to 107170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,792 DEBUG Processing 393/1028 atomic regions from SNP 117676 to 118276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,827 DEBUG Processing 447/477 atomic regions from SNP 133952 to 134552 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,911 DEBUG Processing 467/910 atomic regions from SNP 139866 to 140466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,944 DEBUG Processing 279/653 atomic regions from SNP 83584 to 84184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,948 DEBUG Processing 495/862 atomic regions from SNP 148328 to 148928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,981 DEBUG Processing 357/1138 atomic regions from SNP 106870 to 107470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,027 DEBUG Processing 394/1028 atomic regions from SNP 117976 to 118576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,035 DEBUG Processing 448/477 atomic regions from SNP 134252 to 134852 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,158 DEBUG Processing 468/910 atomic regions from SNP 140166 to 140766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,162 DEBUG Processing 280/653 atomic regions from SNP 83884 to 84484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,165 DEBUG Processing 496/862 atomic regions from SNP 148628 to 149228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,243 DEBUG Processing 449/477 atomic regions from SNP 134552 to 135152 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,254 DEBUG Processing 358/1138 atomic regions from SNP 107170 to 107770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,264 DEBUG Processing 395/1028 atomic regions from SNP 118276 to 118876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,376 DEBUG Processing 281/653 atomic regions from SNP 84184 to 84784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,380 DEBUG Processing 497/862 atomic regions from SNP 148928 to 149528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,394 DEBUG Processing 469/910 atomic regions from SNP 140466 to 141066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,453 DEBUG Processing 450/477 atomic regions from SNP 134852 to 135452 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,501 DEBUG Processing 396/1028 atomic regions from SNP 118576 to 119176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,516 DEBUG Processing 359/1138 atomic regions from SNP 107470 to 108070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,590 DEBUG Processing 282/653 atomic regions from SNP 84484 to 85084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,596 DEBUG Processing 498/862 atomic regions from SNP 149228 to 149828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,619 DEBUG Processing 470/910 atomic regions from SNP 140766 to 141366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,662 DEBUG Processing 451/477 atomic regions from SNP 135152 to 135752 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,738 DEBUG Processing 397/1028 atomic regions from SNP 118876 to 119476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,774 DEBUG Processing 360/1138 atomic regions from SNP 107770 to 108370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,803 DEBUG Processing 283/653 atomic regions from SNP 84784 to 85384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,812 DEBUG Processing 499/862 atomic regions from SNP 149528 to 150128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,841 DEBUG Processing 471/910 atomic regions from SNP 141066 to 141666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,872 DEBUG Processing 452/477 atomic regions from SNP 135452 to 136052 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,979 DEBUG Processing 398/1028 atomic regions from SNP 119176 to 119776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,016 DEBUG Processing 284/653 atomic regions from SNP 85084 to 85684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,026 DEBUG Processing 500/862 atomic regions from SNP 149828 to 150428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,052 DEBUG Processing 361/1138 atomic regions from SNP 108070 to 108670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,065 DEBUG Processing 472/910 atomic regions from SNP 141366 to 141966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,082 DEBUG Processing 453/477 atomic regions from SNP 135752 to 136352 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,226 DEBUG Processing 285/653 atomic regions from SNP 85384 to 85984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,240 DEBUG Processing 399/1028 atomic regions from SNP 119476 to 120076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,244 DEBUG Processing 501/862 atomic regions from SNP 150128 to 150728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,289 DEBUG Processing 473/910 atomic regions from SNP 141666 to 142266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,293 DEBUG Processing 454/477 atomic regions from SNP 136052 to 136652 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,329 DEBUG Processing 362/1138 atomic regions from SNP 108370 to 108970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,440 DEBUG Processing 286/653 atomic regions from SNP 85684 to 86284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,461 DEBUG Processing 502/862 atomic regions from SNP 150428 to 151028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,486 DEBUG Processing 400/1028 atomic regions from SNP 119776 to 120376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,506 DEBUG Processing 455/477 atomic regions from SNP 136352 to 136952 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,535 DEBUG Processing 474/910 atomic regions from SNP 141966 to 142566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,599 DEBUG Processing 363/1138 atomic regions from SNP 108670 to 109270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,651 DEBUG Processing 287/653 atomic regions from SNP 85984 to 86584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,676 DEBUG Processing 503/862 atomic regions from SNP 150728 to 151328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,716 DEBUG Processing 456/477 atomic regions from SNP 136652 to 137252 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,732 DEBUG Processing 401/1028 atomic regions from SNP 120076 to 120676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,790 DEBUG Processing 475/910 atomic regions from SNP 142266 to 142866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,863 DEBUG Processing 364/1138 atomic regions from SNP 108970 to 109570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,868 DEBUG Processing 288/653 atomic regions from SNP 86284 to 86884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,895 DEBUG Processing 504/862 atomic regions from SNP 151028 to 151628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,926 DEBUG Processing 457/477 atomic regions from SNP 136952 to 137552 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,973 DEBUG Processing 402/1028 atomic regions from SNP 120376 to 120976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,044 DEBUG Processing 476/910 atomic regions from SNP 142566 to 143166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,080 DEBUG Processing 289/653 atomic regions from SNP 86584 to 87184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,109 DEBUG Processing 505/862 atomic regions from SNP 151328 to 151928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,136 DEBUG Processing 458/477 atomic regions from SNP 137252 to 137852 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,145 DEBUG Processing 365/1138 atomic regions from SNP 109270 to 109870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,211 DEBUG Processing 403/1028 atomic regions from SNP 120676 to 121276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,291 DEBUG Processing 290/653 atomic regions from SNP 86884 to 87484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,299 DEBUG Processing 477/910 atomic regions from SNP 142866 to 143466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,327 DEBUG Processing 506/862 atomic regions from SNP 151628 to 152228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,345 DEBUG Processing 459/477 atomic regions from SNP 137552 to 138152 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,398 DEBUG Processing 366/1138 atomic regions from SNP 109570 to 110170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,449 DEBUG Processing 404/1028 atomic regions from SNP 120976 to 121576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,503 DEBUG Processing 291/653 atomic regions from SNP 87184 to 87784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,543 DEBUG Processing 507/862 atomic regions from SNP 151928 to 152528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,551 DEBUG Processing 478/910 atomic regions from SNP 143166 to 143766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,553 DEBUG Processing 460/477 atomic regions from SNP 137852 to 138452 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,649 DEBUG Processing 367/1138 atomic regions from SNP 109870 to 110470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,692 DEBUG Processing 405/1028 atomic regions from SNP 121276 to 121876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,715 DEBUG Processing 292/653 atomic regions from SNP 87484 to 88084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,758 DEBUG Processing 508/862 atomic regions from SNP 152228 to 152828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,762 DEBUG Processing 461/477 atomic regions from SNP 138152 to 138752 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,788 DEBUG Processing 479/910 atomic regions from SNP 143466 to 144066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,900 DEBUG Processing 368/1138 atomic regions from SNP 110170 to 110770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,926 DEBUG Processing 293/653 atomic regions from SNP 87784 to 88384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,941 DEBUG Processing 406/1028 atomic regions from SNP 121576 to 122176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,971 DEBUG Processing 462/477 atomic regions from SNP 138452 to 139052 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,971 DEBUG Processing 509/862 atomic regions from SNP 152528 to 153128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,035 DEBUG Processing 480/910 atomic regions from SNP 143766 to 144366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,137 DEBUG Processing 294/653 atomic regions from SNP 88084 to 88684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,154 DEBUG Processing 369/1138 atomic regions from SNP 110470 to 111070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,181 DEBUG Processing 463/477 atomic regions from SNP 138752 to 139352 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,184 DEBUG Processing 407/1028 atomic regions from SNP 121876 to 122476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,185 DEBUG Processing 510/862 atomic regions from SNP 152828 to 153428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,277 DEBUG Processing 481/910 atomic regions from SNP 144066 to 144666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,349 DEBUG Processing 295/653 atomic regions from SNP 88384 to 88984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,389 DEBUG Processing 464/477 atomic regions from SNP 139052 to 139652 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,399 DEBUG Processing 511/862 atomic regions from SNP 153128 to 153728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,405 DEBUG Processing 370/1138 atomic regions from SNP 110770 to 111370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,440 DEBUG Processing 408/1028 atomic regions from SNP 122176 to 122776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,526 DEBUG Processing 482/910 atomic regions from SNP 144366 to 144966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,572 DEBUG Processing 296/653 atomic regions from SNP 88684 to 89284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,598 DEBUG Processing 465/477 atomic regions from SNP 139352 to 139952 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,637 DEBUG Processing 512/862 atomic regions from SNP 153428 to 154028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,659 DEBUG Processing 371/1138 atomic regions from SNP 111070 to 111670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,714 DEBUG Processing 409/1028 atomic regions from SNP 122476 to 123076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,751 DEBUG Processing 483/910 atomic regions from SNP 144666 to 145266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,787 DEBUG Processing 297/653 atomic regions from SNP 88984 to 89584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,808 DEBUG Processing 466/477 atomic regions from SNP 139652 to 140252 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,870 DEBUG Processing 513/862 atomic regions from SNP 153728 to 154328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,912 DEBUG Processing 372/1138 atomic regions from SNP 111370 to 111970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,973 DEBUG Processing 484/910 atomic regions from SNP 144966 to 145566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,974 DEBUG Processing 410/1028 atomic regions from SNP 122776 to 123376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,003 DEBUG Processing 298/653 atomic regions from SNP 89284 to 89884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,022 DEBUG Processing 467/477 atomic regions from SNP 139952 to 140552 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,094 DEBUG Processing 514/862 atomic regions from SNP 154028 to 154628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,164 DEBUG Processing 373/1138 atomic regions from SNP 111670 to 112270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,197 DEBUG Processing 485/910 atomic regions from SNP 145266 to 145866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,212 DEBUG Processing 411/1028 atomic regions from SNP 123076 to 123676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,222 DEBUG Processing 299/653 atomic regions from SNP 89584 to 90184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,238 DEBUG Processing 468/477 atomic regions from SNP 140252 to 140852 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,310 DEBUG Processing 515/862 atomic regions from SNP 154328 to 154928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,435 DEBUG Processing 374/1138 atomic regions from SNP 111970 to 112570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,437 DEBUG Processing 486/910 atomic regions from SNP 145566 to 146166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,441 DEBUG Processing 300/653 atomic regions from SNP 89884 to 90484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,452 DEBUG Processing 412/1028 atomic regions from SNP 123376 to 123976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,453 DEBUG Processing 469/477 atomic regions from SNP 140552 to 141152 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,523 DEBUG Processing 516/862 atomic regions from SNP 154628 to 155228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,656 DEBUG Processing 301/653 atomic regions from SNP 90184 to 90784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,666 DEBUG Processing 470/477 atomic regions from SNP 140852 to 141452 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,676 DEBUG Processing 487/910 atomic regions from SNP 145866 to 146466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,692 DEBUG Processing 413/1028 atomic regions from SNP 123676 to 124276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,703 DEBUG Processing 375/1138 atomic regions from SNP 112270 to 112870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,739 DEBUG Processing 517/862 atomic regions from SNP 154928 to 155528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,868 DEBUG Processing 302/653 atomic regions from SNP 90484 to 91084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,875 DEBUG Processing 471/477 atomic regions from SNP 141152 to 141752 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,935 DEBUG Processing 488/910 atomic regions from SNP 146166 to 146766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,941 DEBUG Processing 414/1028 atomic regions from SNP 123976 to 124576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,957 DEBUG Processing 518/862 atomic regions from SNP 155228 to 155828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,962 DEBUG Processing 376/1138 atomic regions from SNP 112570 to 113170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,078 DEBUG Processing 303/653 atomic regions from SNP 90784 to 91384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,082 DEBUG Processing 472/477 atomic regions from SNP 141452 to 142052 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,180 DEBUG Processing 519/862 atomic regions from SNP 155528 to 156128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,190 DEBUG Processing 415/1028 atomic regions from SNP 124276 to 124876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,196 DEBUG Processing 489/910 atomic regions from SNP 146466 to 147066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,219 DEBUG Processing 377/1138 atomic regions from SNP 112870 to 113470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,291 DEBUG Processing 473/477 atomic regions from SNP 141752 to 142352 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,297 DEBUG Processing 304/653 atomic regions from SNP 91084 to 91684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,399 DEBUG Processing 520/862 atomic regions from SNP 155828 to 156428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,434 DEBUG Processing 416/1028 atomic regions from SNP 124576 to 125176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,455 DEBUG Processing 490/910 atomic regions from SNP 146766 to 147366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,474 DEBUG Processing 378/1138 atomic regions from SNP 113170 to 113770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,502 DEBUG Processing 474/477 atomic regions from SNP 142052 to 142652 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,511 DEBUG Processing 305/653 atomic regions from SNP 91384 to 91984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,614 DEBUG Processing 521/862 atomic regions from SNP 156128 to 156728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,676 DEBUG Processing 417/1028 atomic regions from SNP 124876 to 125476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,717 DEBUG Processing 491/910 atomic regions from SNP 147066 to 147666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,721 DEBUG Processing 475/477 atomic regions from SNP 142352 to 142952 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,729 DEBUG Processing 379/1138 atomic regions from SNP 113470 to 114070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,734 DEBUG Processing 306/653 atomic regions from SNP 91684 to 92284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,827 DEBUG Processing 522/862 atomic regions from SNP 156428 to 157028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,926 DEBUG Processing 418/1028 atomic regions from SNP 125176 to 125776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,934 DEBUG Processing 476/477 atomic regions from SNP 142652 to 143252 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,954 DEBUG Processing 307/653 atomic regions from SNP 91984 to 92584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,977 DEBUG Processing 492/910 atomic regions from SNP 147366 to 147966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,982 DEBUG Processing 380/1138 atomic regions from SNP 113770 to 114370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,041 DEBUG Processing 523/862 atomic regions from SNP 156728 to 157328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,143 DEBUG Processing 477/477 atomic regions from SNP 142952 to 143552 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,170 DEBUG Processing 308/653 atomic regions from SNP 92284 to 92884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,189 DEBUG Processing 419/1028 atomic regions from SNP 125476 to 126076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,234 DEBUG Processing 381/1138 atomic regions from SNP 114070 to 114670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,236 DEBUG Processing 493/910 atomic regions from SNP 147666 to 148266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,249 DEBUG Unique SNPs positions in subchromosome 4: 143553 2025-01-31 09:45:15,254 DEBUG Processing 524/862 atomic regions from SNP 157028 to 157628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,385 DEBUG Processing 309/653 atomic regions from SNP 92584 to 93184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,430 DEBUG Processing 420/1028 atomic regions from SNP 125776 to 126376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,468 DEBUG Processing 525/862 atomic regions from SNP 157328 to 157928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,491 DEBUG Processing 382/1138 atomic regions from SNP 114370 to 114970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,497 DEBUG Processing 494/910 atomic regions from SNP 147966 to 148566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,596 DEBUG Subchromosome time: 118.29685952328146, subchromosome SNPs: 143553 2025-01-31 09:45:15,596 DEBUG Processing 310/653 atomic regions from SNP 92884 to 93484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,614 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:15,681 DEBUG Processing 421/1028 atomic regions from SNP 126076 to 126676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,685 DEBUG Processing 526/862 atomic regions from SNP 157628 to 158228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,747 DEBUG Processing 383/1138 atomic regions from SNP 114670 to 115270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,753 DEBUG Processing 495/910 atomic regions from SNP 148266 to 148866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,809 DEBUG Processing 311/653 atomic regions from SNP 93184 to 93784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,902 DEBUG Processing 527/862 atomic regions from SNP 157928 to 158528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,943 DEBUG Processing 422/1028 atomic regions from SNP 126376 to 126976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,002 DEBUG Processing 384/1138 atomic regions from SNP 114970 to 115570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,012 DEBUG Processing 496/910 atomic regions from SNP 148566 to 149166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,032 DEBUG Processing 312/653 atomic regions from SNP 93484 to 94084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,130 DEBUG Processing 528/862 atomic regions from SNP 158228 to 158828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,187 DEBUG Processing 423/1028 atomic regions from SNP 126676 to 127276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,246 DEBUG Processing 313/653 atomic regions from SNP 93784 to 94384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,256 DEBUG Processing 385/1138 atomic regions from SNP 115270 to 115870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,273 DEBUG Processing 497/910 atomic regions from SNP 148866 to 149466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,353 DEBUG Processing 529/862 atomic regions from SNP 158528 to 159128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,432 DEBUG Processing 424/1028 atomic regions from SNP 126976 to 127576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,463 DEBUG Processing 314/653 atomic regions from SNP 94084 to 94684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,511 DEBUG Processing 386/1138 atomic regions from SNP 115570 to 116170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,533 DEBUG Processing 498/910 atomic regions from SNP 149166 to 149766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,569 DEBUG Processing 530/862 atomic regions from SNP 158828 to 159428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,675 DEBUG Processing 425/1028 atomic regions from SNP 127276 to 127876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,678 DEBUG Processing 315/653 atomic regions from SNP 94384 to 94984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,764 DEBUG Processing 387/1138 atomic regions from SNP 115870 to 116470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,783 DEBUG Processing 531/862 atomic regions from SNP 159128 to 159728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,785 DEBUG Processing 499/910 atomic regions from SNP 149466 to 150066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,892 DEBUG Processing 316/653 atomic regions from SNP 94684 to 95284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,912 DEBUG Processing 426/1028 atomic regions from SNP 127576 to 128176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,997 DEBUG Processing 532/862 atomic regions from SNP 159428 to 160028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,017 DEBUG Processing 388/1138 atomic regions from SNP 116170 to 116770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,039 DEBUG Processing 500/910 atomic regions from SNP 149766 to 150366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,104 DEBUG Processing 317/653 atomic regions from SNP 94984 to 95584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,148 DEBUG Processing 427/1028 atomic regions from SNP 127876 to 128476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,212 DEBUG Processing 533/862 atomic regions from SNP 159728 to 160328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,273 DEBUG Processing 389/1138 atomic regions from SNP 116470 to 117070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,287 DEBUG Processing 501/910 atomic regions from SNP 150066 to 150666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,318 DEBUG Processing 318/653 atomic regions from SNP 95284 to 95884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,385 DEBUG Processing 428/1028 atomic regions from SNP 128176 to 128776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,426 DEBUG Processing 534/862 atomic regions from SNP 160028 to 160628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,529 DEBUG Processing 390/1138 atomic regions from SNP 116770 to 117370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,531 DEBUG Processing 319/653 atomic regions from SNP 95584 to 96184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,538 DEBUG Processing 502/910 atomic regions from SNP 150366 to 150966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,624 DEBUG Processing 429/1028 atomic regions from SNP 128476 to 129076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,639 DEBUG Processing 535/862 atomic regions from SNP 160328 to 160928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,753 DEBUG Processing 320/653 atomic regions from SNP 95884 to 96484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,785 DEBUG Processing 391/1138 atomic regions from SNP 117070 to 117670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,790 DEBUG Processing 503/910 atomic regions from SNP 150666 to 151266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,852 DEBUG Processing 536/862 atomic regions from SNP 160628 to 161228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,862 DEBUG Processing 430/1028 atomic regions from SNP 128776 to 129376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,967 DEBUG Processing 321/653 atomic regions from SNP 96184 to 96784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,037 DEBUG Processing 392/1138 atomic regions from SNP 117370 to 117970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,052 DEBUG Processing 504/910 atomic regions from SNP 150966 to 151566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,066 DEBUG Processing 537/862 atomic regions from SNP 160928 to 161528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,101 DEBUG Processing 431/1028 atomic regions from SNP 129076 to 129676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,181 DEBUG Processing 322/653 atomic regions from SNP 96484 to 97084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,282 DEBUG Processing 538/862 atomic regions from SNP 161228 to 161828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,290 DEBUG Processing 393/1138 atomic regions from SNP 117670 to 118270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,308 DEBUG Processing 505/910 atomic regions from SNP 151266 to 151866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,341 DEBUG Processing 432/1028 atomic regions from SNP 129376 to 129976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,394 DEBUG Processing 323/653 atomic regions from SNP 96784 to 97384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,498 DEBUG Processing 539/862 atomic regions from SNP 161528 to 162128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,537 DEBUG Processing 506/910 atomic regions from SNP 151566 to 152166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,545 DEBUG Processing 394/1138 atomic regions from SNP 117970 to 118570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,581 DEBUG Processing 433/1028 atomic regions from SNP 129676 to 130276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,608 DEBUG Processing 324/653 atomic regions from SNP 97084 to 97684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,710 DEBUG Processing 540/862 atomic regions from SNP 161828 to 162428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,764 DEBUG Processing 507/910 atomic regions from SNP 151866 to 152466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,801 DEBUG Processing 395/1138 atomic regions from SNP 118270 to 118870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,822 DEBUG Processing 325/653 atomic regions from SNP 97384 to 97984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,822 DEBUG Processing 434/1028 atomic regions from SNP 129976 to 130576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,923 DEBUG Processing 541/862 atomic regions from SNP 162128 to 162728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,998 DEBUG Processing 508/910 atomic regions from SNP 152166 to 152766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,038 DEBUG Processing 326/653 atomic regions from SNP 97684 to 98284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,054 DEBUG Processing 396/1138 atomic regions from SNP 118570 to 119170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,069 DEBUG Processing 435/1028 atomic regions from SNP 130276 to 130876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,133 DEBUG Processing 542/862 atomic regions from SNP 162428 to 163028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,223 DEBUG Processing 509/910 atomic regions from SNP 152466 to 153066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,253 DEBUG Processing 327/653 atomic regions from SNP 97984 to 98584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,309 DEBUG Processing 397/1138 atomic regions from SNP 118870 to 119470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,335 DEBUG Processing 436/1028 atomic regions from SNP 130576 to 131176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,348 DEBUG Processing 543/862 atomic regions from SNP 162728 to 163328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,446 DEBUG Processing 510/910 atomic regions from SNP 152766 to 153366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,476 DEBUG Processing 328/653 atomic regions from SNP 98284 to 98884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,563 DEBUG Processing 544/862 atomic regions from SNP 163028 to 163628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,565 DEBUG Processing 398/1138 atomic regions from SNP 119170 to 119770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,575 DEBUG Processing 437/1028 atomic regions from SNP 130876 to 131476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,667 DEBUG Processing 511/910 atomic regions from SNP 153066 to 153666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,689 DEBUG Processing 329/653 atomic regions from SNP 98584 to 99184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,778 DEBUG Processing 545/862 atomic regions from SNP 163328 to 163928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,814 DEBUG Processing 438/1028 atomic regions from SNP 131176 to 131776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,821 DEBUG Processing 399/1138 atomic regions from SNP 119470 to 120070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,888 DEBUG Processing 512/910 atomic regions from SNP 153366 to 153966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,902 DEBUG Processing 330/653 atomic regions from SNP 98884 to 99484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,992 DEBUG Processing 546/862 atomic regions from SNP 163628 to 164228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,056 DEBUG Processing 439/1028 atomic regions from SNP 131476 to 132076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,075 DEBUG Processing 400/1138 atomic regions from SNP 119770 to 120370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,109 DEBUG Processing 513/910 atomic regions from SNP 153666 to 154266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,116 DEBUG Processing 331/653 atomic regions from SNP 99184 to 99784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,225 DEBUG Processing 547/862 atomic regions from SNP 163928 to 164528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,298 DEBUG Processing 440/1028 atomic regions from SNP 131776 to 132376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,330 DEBUG Processing 401/1138 atomic regions from SNP 120070 to 120670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,331 DEBUG Processing 514/910 atomic regions from SNP 153966 to 154566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,339 DEBUG Processing 332/653 atomic regions from SNP 99484 to 100084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,437 DEBUG Processing 548/862 atomic regions from SNP 164228 to 164828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,553 DEBUG Processing 441/1028 atomic regions from SNP 132076 to 132676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,553 DEBUG Processing 515/910 atomic regions from SNP 154266 to 154866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,575 DEBUG Processing 333/653 atomic regions from SNP 99784 to 100384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,586 DEBUG Processing 402/1138 atomic regions from SNP 120370 to 120970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,664 DEBUG Processing 549/862 atomic regions from SNP 164528 to 165128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,779 DEBUG Processing 516/910 atomic regions from SNP 154566 to 155166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,808 DEBUG Processing 334/653 atomic regions from SNP 100084 to 100684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,818 DEBUG Processing 442/1028 atomic regions from SNP 132376 to 132976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,840 DEBUG Processing 403/1138 atomic regions from SNP 120670 to 121270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,898 DEBUG Processing 550/862 atomic regions from SNP 164828 to 165428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,005 DEBUG Processing 517/910 atomic regions from SNP 154866 to 155466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,047 DEBUG Processing 335/653 atomic regions from SNP 100384 to 100984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,058 DEBUG Processing 443/1028 atomic regions from SNP 132676 to 133276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,091 DEBUG Processing 404/1138 atomic regions from SNP 120970 to 121570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,123 DEBUG Processing 551/862 atomic regions from SNP 165128 to 165728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,228 DEBUG Processing 518/910 atomic regions from SNP 155166 to 155766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,262 DEBUG Processing 336/653 atomic regions from SNP 100684 to 101284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,296 DEBUG Processing 444/1028 atomic regions from SNP 132976 to 133576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,337 DEBUG Processing 552/862 atomic regions from SNP 165428 to 166028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,343 DEBUG Processing 405/1138 atomic regions from SNP 121270 to 121870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,450 DEBUG Processing 519/910 atomic regions from SNP 155466 to 156066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,478 DEBUG Processing 337/653 atomic regions from SNP 100984 to 101584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,537 DEBUG Processing 445/1028 atomic regions from SNP 133276 to 133876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,551 DEBUG Processing 553/862 atomic regions from SNP 165728 to 166328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,604 DEBUG Processing 406/1138 atomic regions from SNP 121570 to 122170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,673 DEBUG Processing 520/910 atomic regions from SNP 155766 to 156366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,692 DEBUG Processing 338/653 atomic regions from SNP 101284 to 101884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,766 DEBUG Processing 554/862 atomic regions from SNP 166028 to 166628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,776 DEBUG Processing 446/1028 atomic regions from SNP 133576 to 134176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,886 DEBUG Processing 407/1138 atomic regions from SNP 121870 to 122470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,895 DEBUG Processing 521/910 atomic regions from SNP 156066 to 156666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,903 DEBUG Processing 339/653 atomic regions from SNP 101584 to 102184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,981 DEBUG Processing 555/862 atomic regions from SNP 166328 to 166928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,025 DEBUG Processing 447/1028 atomic regions from SNP 133876 to 134476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,117 DEBUG Processing 340/653 atomic regions from SNP 101884 to 102484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,120 DEBUG Processing 522/910 atomic regions from SNP 156366 to 156966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,154 DEBUG Processing 408/1138 atomic regions from SNP 122170 to 122770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,195 DEBUG Processing 556/862 atomic regions from SNP 166628 to 167228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,265 DEBUG Processing 448/1028 atomic regions from SNP 134176 to 134776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,332 DEBUG Processing 341/653 atomic regions from SNP 102184 to 102784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,343 DEBUG Processing 523/910 atomic regions from SNP 156666 to 157266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,411 DEBUG Processing 557/862 atomic regions from SNP 166928 to 167528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,419 DEBUG Processing 409/1138 atomic regions from SNP 122470 to 123070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,502 DEBUG Processing 449/1028 atomic regions from SNP 134476 to 135076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,548 DEBUG Processing 342/653 atomic regions from SNP 102484 to 103084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,584 DEBUG Processing 524/910 atomic regions from SNP 156966 to 157566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,627 DEBUG Processing 558/862 atomic regions from SNP 167228 to 167828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,675 DEBUG Processing 410/1138 atomic regions from SNP 122770 to 123370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,740 DEBUG Processing 450/1028 atomic regions from SNP 134776 to 135376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,771 DEBUG Processing 343/653 atomic regions from SNP 102784 to 103384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,833 DEBUG Processing 525/910 atomic regions from SNP 157266 to 157866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,842 DEBUG Processing 559/862 atomic regions from SNP 167528 to 168128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,927 DEBUG Processing 411/1138 atomic regions from SNP 123070 to 123670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,977 DEBUG Processing 451/1028 atomic regions from SNP 135076 to 135676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,004 DEBUG Processing 344/653 atomic regions from SNP 103084 to 103684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,056 DEBUG Processing 560/862 atomic regions from SNP 167828 to 168428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,086 DEBUG Processing 526/910 atomic regions from SNP 157566 to 158166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,177 DEBUG Processing 412/1138 atomic regions from SNP 123370 to 123970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,214 DEBUG Processing 452/1028 atomic regions from SNP 135376 to 135976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,223 DEBUG Processing 345/653 atomic regions from SNP 103384 to 103984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,269 DEBUG Processing 561/862 atomic regions from SNP 168128 to 168728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,343 DEBUG Processing 527/910 atomic regions from SNP 157866 to 158466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,426 DEBUG Processing 413/1138 atomic regions from SNP 123670 to 124270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,439 DEBUG Processing 346/653 atomic regions from SNP 103684 to 104284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,450 DEBUG Processing 453/1028 atomic regions from SNP 135676 to 136276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,480 DEBUG Processing 562/862 atomic regions from SNP 168428 to 169028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,602 DEBUG Processing 528/910 atomic regions from SNP 158166 to 158766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,656 DEBUG Processing 347/653 atomic regions from SNP 103984 to 104584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,677 DEBUG Processing 414/1138 atomic regions from SNP 123970 to 124570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,691 DEBUG Processing 454/1028 atomic regions from SNP 135976 to 136576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,692 DEBUG Processing 563/862 atomic regions from SNP 168728 to 169328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,863 DEBUG Processing 529/910 atomic regions from SNP 158466 to 159066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,873 DEBUG Processing 348/653 atomic regions from SNP 104284 to 104884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,909 DEBUG Processing 564/862 atomic regions from SNP 169028 to 169628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,932 DEBUG Processing 455/1028 atomic regions from SNP 136276 to 136876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,932 DEBUG Processing 415/1138 atomic regions from SNP 124270 to 124870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,089 DEBUG Processing 349/653 atomic regions from SNP 104584 to 105184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,117 DEBUG Processing 530/910 atomic regions from SNP 158766 to 159366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,126 DEBUG Processing 565/862 atomic regions from SNP 169328 to 169928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,175 DEBUG Processing 456/1028 atomic regions from SNP 136576 to 137176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,186 DEBUG Processing 416/1138 atomic regions from SNP 124570 to 125170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,302 DEBUG Processing 350/653 atomic regions from SNP 104884 to 105484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,341 DEBUG Processing 566/862 atomic regions from SNP 169628 to 170228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,373 DEBUG Processing 531/910 atomic regions from SNP 159066 to 159666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,417 DEBUG Processing 457/1028 atomic regions from SNP 136876 to 137476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,442 DEBUG Processing 417/1138 atomic regions from SNP 124870 to 125470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,518 DEBUG Processing 351/653 atomic regions from SNP 105184 to 105784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,555 DEBUG Processing 567/862 atomic regions from SNP 169928 to 170528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,633 DEBUG Processing 532/910 atomic regions from SNP 159366 to 159966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,657 DEBUG Processing 458/1028 atomic regions from SNP 137176 to 137776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,710 DEBUG Processing 418/1138 atomic regions from SNP 125170 to 125770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,727 DEBUG Processing 352/653 atomic regions from SNP 105484 to 106084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,761 DEBUG Segmenting atomic regions: 2025-01-31 09:45:24,765 DEBUG Processing 568/862 atomic regions from SNP 170228 to 170828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,867 DEBUG Processing 1/236 atomic regions from SNP 0 to 602 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:24,889 DEBUG Processing 533/910 atomic regions from SNP 159666 to 160266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,896 DEBUG Processing 459/1028 atomic regions from SNP 137476 to 138076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,941 DEBUG Processing 353/653 atomic regions from SNP 105784 to 106384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,986 DEBUG Processing 419/1138 atomic regions from SNP 125470 to 126070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,005 DEBUG Processing 569/862 atomic regions from SNP 170528 to 171128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,078 DEBUG Processing 2/236 atomic regions from SNP 302 to 904 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:25,139 DEBUG Processing 460/1028 atomic regions from SNP 137776 to 138376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,148 DEBUG Processing 534/910 atomic regions from SNP 159966 to 160566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,155 DEBUG Processing 354/653 atomic regions from SNP 106084 to 106684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,253 DEBUG Processing 570/862 atomic regions from SNP 170828 to 171428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,268 DEBUG Processing 420/1138 atomic regions from SNP 125770 to 126370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,284 DEBUG Processing 3/236 atomic regions from SNP 604 to 1206 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:25,372 DEBUG Processing 355/653 atomic regions from SNP 106384 to 106984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,378 DEBUG Processing 461/1028 atomic regions from SNP 138076 to 138676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,404 DEBUG Processing 535/910 atomic regions from SNP 160266 to 160866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,488 DEBUG Processing 4/236 atomic regions from SNP 906 to 1508 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:25,499 DEBUG Processing 571/862 atomic regions from SNP 171128 to 171728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,547 DEBUG Processing 421/1138 atomic regions from SNP 126070 to 126670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,588 DEBUG Processing 356/653 atomic regions from SNP 106684 to 107284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,615 DEBUG Processing 462/1028 atomic regions from SNP 138376 to 138976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,661 DEBUG Processing 536/910 atomic regions from SNP 160566 to 161166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,693 DEBUG Processing 5/236 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:25,735 DEBUG Processing 572/862 atomic regions from SNP 171428 to 172028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,802 DEBUG Processing 357/653 atomic regions from SNP 106984 to 107584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,827 DEBUG Processing 422/1138 atomic regions from SNP 126370 to 126970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,854 DEBUG Processing 463/1028 atomic regions from SNP 138676 to 139276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,899 DEBUG Processing 6/236 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:25,921 DEBUG Processing 537/910 atomic regions from SNP 160866 to 161466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,949 DEBUG Processing 573/862 atomic regions from SNP 171728 to 172328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,016 DEBUG Processing 358/653 atomic regions from SNP 107284 to 107884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,096 DEBUG Processing 464/1028 atomic regions from SNP 138976 to 139576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,102 DEBUG Processing 423/1138 atomic regions from SNP 126670 to 127270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,106 DEBUG Processing 7/236 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:26,165 DEBUG Processing 574/862 atomic regions from SNP 172028 to 172628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,179 DEBUG Processing 538/910 atomic regions from SNP 161166 to 161766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,231 DEBUG Processing 359/653 atomic regions from SNP 107584 to 108184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,312 DEBUG Processing 8/236 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:26,335 DEBUG Processing 465/1028 atomic regions from SNP 139276 to 139876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,381 DEBUG Processing 424/1138 atomic regions from SNP 126970 to 127570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,381 DEBUG Processing 575/862 atomic regions from SNP 172328 to 172928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,428 DEBUG Processing 539/910 atomic regions from SNP 161466 to 162066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,446 DEBUG Processing 360/653 atomic regions from SNP 107884 to 108484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,517 DEBUG Processing 9/236 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:26,574 DEBUG Processing 466/1028 atomic regions from SNP 139576 to 140176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,601 DEBUG Processing 576/862 atomic regions from SNP 172628 to 173228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,661 DEBUG Processing 361/653 atomic regions from SNP 108184 to 108784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,667 DEBUG Processing 425/1138 atomic regions from SNP 127270 to 127870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,671 DEBUG Processing 540/910 atomic regions from SNP 161766 to 162366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,722 DEBUG Processing 10/236 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:26,814 DEBUG Processing 467/1028 atomic regions from SNP 139876 to 140476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,816 DEBUG Processing 577/862 atomic regions from SNP 172928 to 173528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,877 DEBUG Processing 362/653 atomic regions from SNP 108484 to 109084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,926 DEBUG Processing 541/910 atomic regions from SNP 162066 to 162666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,929 DEBUG Processing 11/236 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:26,949 DEBUG Processing 426/1138 atomic regions from SNP 127570 to 128170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,031 DEBUG Processing 578/862 atomic regions from SNP 173228 to 173828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,051 DEBUG Processing 468/1028 atomic regions from SNP 140176 to 140776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,093 DEBUG Processing 363/653 atomic regions from SNP 108784 to 109384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,136 DEBUG Processing 12/236 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:27,157 DEBUG Processing 542/910 atomic regions from SNP 162366 to 162966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,226 DEBUG Processing 427/1138 atomic regions from SNP 127870 to 128470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,263 DEBUG Processing 579/862 atomic regions from SNP 173528 to 174128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,289 DEBUG Processing 469/1028 atomic regions from SNP 140476 to 141076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,310 DEBUG Processing 364/653 atomic regions from SNP 109084 to 109684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,343 DEBUG Processing 13/236 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:27,401 DEBUG Processing 543/910 atomic regions from SNP 162666 to 163266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,484 DEBUG Processing 428/1138 atomic regions from SNP 128170 to 128770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,502 DEBUG Processing 580/862 atomic regions from SNP 173828 to 174428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,530 DEBUG Processing 470/1028 atomic regions from SNP 140776 to 141376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,538 DEBUG Processing 365/653 atomic regions from SNP 109384 to 109984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,548 DEBUG Processing 14/236 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:27,656 DEBUG Processing 544/910 atomic regions from SNP 162966 to 163566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,735 DEBUG Processing 429/1138 atomic regions from SNP 128470 to 129070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,736 DEBUG Processing 581/862 atomic regions from SNP 174128 to 174728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,756 DEBUG Processing 15/236 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:27,770 DEBUG Processing 471/1028 atomic regions from SNP 141076 to 141676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,771 DEBUG Processing 366/653 atomic regions from SNP 109684 to 110284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,908 DEBUG Processing 545/910 atomic regions from SNP 163266 to 163866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,954 DEBUG Processing 582/862 atomic regions from SNP 174428 to 175028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,965 DEBUG Processing 16/236 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:27,988 DEBUG Processing 430/1138 atomic regions from SNP 128770 to 129370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,011 DEBUG Processing 472/1028 atomic regions from SNP 141376 to 141976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,012 DEBUG Processing 367/653 atomic regions from SNP 109984 to 110584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,161 DEBUG Processing 546/910 atomic regions from SNP 163566 to 164166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,171 DEBUG Processing 583/862 atomic regions from SNP 174728 to 175328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,172 DEBUG Processing 17/236 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:28,237 DEBUG Processing 431/1138 atomic regions from SNP 129070 to 129670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,250 DEBUG Processing 368/653 atomic regions from SNP 110284 to 110884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,259 DEBUG Processing 473/1028 atomic regions from SNP 141676 to 142276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,376 DEBUG Processing 18/236 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:28,386 DEBUG Processing 584/862 atomic regions from SNP 175028 to 175628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,404 DEBUG Processing 547/910 atomic regions from SNP 163866 to 164466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,488 DEBUG Processing 432/1138 atomic regions from SNP 129370 to 129970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,491 DEBUG Processing 369/653 atomic regions from SNP 110584 to 111184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,503 DEBUG Processing 474/1028 atomic regions from SNP 141976 to 142576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,580 DEBUG Processing 19/236 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:28,600 DEBUG Processing 585/862 atomic regions from SNP 175328 to 175928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,634 DEBUG Processing 548/910 atomic regions from SNP 164166 to 164766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,728 DEBUG Processing 370/653 atomic regions from SNP 110884 to 111484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,738 DEBUG Processing 433/1138 atomic regions from SNP 129670 to 130270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,749 DEBUG Processing 475/1028 atomic regions from SNP 142276 to 142876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,785 DEBUG Processing 20/236 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:28,815 DEBUG Processing 586/862 atomic regions from SNP 175628 to 176228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,854 DEBUG Processing 549/910 atomic regions from SNP 164466 to 165066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,955 DEBUG Processing 371/653 atomic regions from SNP 111184 to 111784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,989 DEBUG Processing 434/1138 atomic regions from SNP 129970 to 130570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,991 DEBUG Processing 21/236 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:28,993 DEBUG Processing 476/1028 atomic regions from SNP 142576 to 143176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,041 DEBUG Processing 587/862 atomic regions from SNP 175928 to 176528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,075 DEBUG Processing 550/910 atomic regions from SNP 164766 to 165366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,182 DEBUG Processing 372/653 atomic regions from SNP 111484 to 112084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,199 DEBUG Processing 22/236 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:29,237 DEBUG Processing 477/1028 atomic regions from SNP 142876 to 143476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,241 DEBUG Processing 435/1138 atomic regions from SNP 130270 to 130870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,260 DEBUG Processing 588/862 atomic regions from SNP 176228 to 176828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,302 DEBUG Processing 551/910 atomic regions from SNP 165066 to 165666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,403 DEBUG Processing 23/236 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:29,425 DEBUG Processing 373/653 atomic regions from SNP 111784 to 112384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,477 DEBUG Processing 589/862 atomic regions from SNP 176528 to 177128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,482 DEBUG Processing 478/1028 atomic regions from SNP 143176 to 143776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,494 DEBUG Processing 436/1138 atomic regions from SNP 130570 to 131170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,537 DEBUG Processing 552/910 atomic regions from SNP 165366 to 165966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,605 DEBUG Processing 24/236 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:29,670 DEBUG Processing 374/653 atomic regions from SNP 112084 to 112684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,693 DEBUG Processing 590/862 atomic regions from SNP 176828 to 177428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,726 DEBUG Processing 479/1028 atomic regions from SNP 143476 to 144076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,746 DEBUG Processing 437/1138 atomic regions from SNP 130870 to 131470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,764 DEBUG Processing 553/910 atomic regions from SNP 165666 to 166266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,806 DEBUG Processing 25/236 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:29,898 DEBUG Processing 375/653 atomic regions from SNP 112384 to 112984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,919 DEBUG Processing 591/862 atomic regions from SNP 177128 to 177728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,975 DEBUG Processing 480/1028 atomic regions from SNP 143776 to 144376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,992 DEBUG Processing 554/910 atomic regions from SNP 165966 to 166566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,997 DEBUG Processing 438/1138 atomic regions from SNP 131170 to 131770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,010 DEBUG Processing 26/236 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:30,114 DEBUG Processing 376/653 atomic regions from SNP 112684 to 113284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,138 DEBUG Processing 592/862 atomic regions from SNP 177428 to 178028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,220 DEBUG Processing 27/236 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:30,220 DEBUG Processing 555/910 atomic regions from SNP 166266 to 166866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,220 DEBUG Processing 481/1028 atomic regions from SNP 144076 to 144676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,251 DEBUG Processing 439/1138 atomic regions from SNP 131470 to 132070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,322 DEBUG Processing 377/653 atomic regions from SNP 112984 to 113584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,351 DEBUG Processing 593/862 atomic regions from SNP 177728 to 178328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,428 DEBUG Processing 28/236 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:30,449 DEBUG Processing 556/910 atomic regions from SNP 166566 to 167166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,467 DEBUG Processing 482/1028 atomic regions from SNP 144376 to 144976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,502 DEBUG Processing 440/1138 atomic regions from SNP 131770 to 132370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,540 DEBUG Processing 378/653 atomic regions from SNP 113284 to 113884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,587 DEBUG Processing 594/862 atomic regions from SNP 178028 to 178628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,635 DEBUG Processing 29/236 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:30,680 DEBUG Processing 557/910 atomic regions from SNP 166866 to 167466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,718 DEBUG Processing 483/1028 atomic regions from SNP 144676 to 145276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,752 DEBUG Processing 441/1138 atomic regions from SNP 132070 to 132670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,769 DEBUG Processing 379/653 atomic regions from SNP 113584 to 114184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,823 DEBUG Processing 595/862 atomic regions from SNP 178328 to 178928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,839 DEBUG Processing 30/236 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:30,907 DEBUG Processing 558/910 atomic regions from SNP 167166 to 167766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,962 DEBUG Processing 484/1028 atomic regions from SNP 144976 to 145576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,003 DEBUG Processing 442/1138 atomic regions from SNP 132370 to 132970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,014 DEBUG Processing 380/653 atomic regions from SNP 113884 to 114484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,043 DEBUG Processing 596/862 atomic regions from SNP 178628 to 179228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,045 DEBUG Processing 31/236 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:31,148 DEBUG Processing 559/910 atomic regions from SNP 167466 to 168066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,205 DEBUG Processing 485/1028 atomic regions from SNP 145276 to 145876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,237 DEBUG Processing 381/653 atomic regions from SNP 114184 to 114784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,250 DEBUG Processing 32/236 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:31,252 DEBUG Processing 443/1138 atomic regions from SNP 132670 to 133270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,274 DEBUG Processing 597/862 atomic regions from SNP 178928 to 179528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,397 DEBUG Processing 560/910 atomic regions from SNP 167766 to 168366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,447 DEBUG Processing 486/1028 atomic regions from SNP 145576 to 146176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,457 DEBUG Processing 33/236 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:31,467 DEBUG Processing 382/653 atomic regions from SNP 114484 to 115084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,501 DEBUG Processing 598/862 atomic regions from SNP 179228 to 179828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,512 DEBUG Processing 444/1138 atomic regions from SNP 132970 to 133570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,640 DEBUG Processing 561/910 atomic regions from SNP 168066 to 168666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,663 DEBUG Processing 34/236 atomic regions from SNP 9966 to 10568 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:31,691 DEBUG Processing 487/1028 atomic regions from SNP 145876 to 146476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,702 DEBUG Processing 383/653 atomic regions from SNP 114784 to 115384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,739 DEBUG Processing 599/862 atomic regions from SNP 179528 to 180128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,779 DEBUG Processing 445/1138 atomic regions from SNP 133270 to 133870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,867 DEBUG Processing 35/236 atomic regions from SNP 10268 to 10870 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:31,887 DEBUG Processing 562/910 atomic regions from SNP 168366 to 168966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,925 DEBUG Processing 384/653 atomic regions from SNP 115084 to 115684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,958 DEBUG Processing 488/1028 atomic regions from SNP 146176 to 146776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,962 DEBUG Processing 600/862 atomic regions from SNP 179828 to 180428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,036 DEBUG Processing 446/1138 atomic regions from SNP 133570 to 134170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,073 DEBUG Processing 36/236 atomic regions from SNP 10570 to 11172 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:32,132 DEBUG Processing 563/910 atomic regions from SNP 168666 to 169266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,135 DEBUG Processing 385/653 atomic regions from SNP 115384 to 115984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,179 DEBUG Processing 601/862 atomic regions from SNP 180128 to 180728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,237 DEBUG Processing 489/1028 atomic regions from SNP 146476 to 147076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,277 DEBUG Processing 37/236 atomic regions from SNP 10872 to 11474 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:32,283 DEBUG Processing 447/1138 atomic regions from SNP 133870 to 134470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,346 DEBUG Processing 386/653 atomic regions from SNP 115684 to 116284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,367 DEBUG Processing 564/910 atomic regions from SNP 168966 to 169566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,394 DEBUG Processing 602/862 atomic regions from SNP 180428 to 181028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,482 DEBUG Processing 38/236 atomic regions from SNP 11174 to 11776 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:32,511 DEBUG Processing 490/1028 atomic regions from SNP 146776 to 147376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,532 DEBUG Processing 448/1138 atomic regions from SNP 134170 to 134770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,558 DEBUG Processing 387/653 atomic regions from SNP 115984 to 116584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,610 DEBUG Processing 603/862 atomic regions from SNP 180728 to 181328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,619 DEBUG Processing 565/910 atomic regions from SNP 169266 to 169866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,689 DEBUG Processing 39/236 atomic regions from SNP 11476 to 12078 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:32,756 DEBUG Processing 491/1028 atomic regions from SNP 147076 to 147676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,776 DEBUG Processing 388/653 atomic regions from SNP 116284 to 116884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,780 DEBUG Processing 449/1138 atomic regions from SNP 134470 to 135070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,824 DEBUG Processing 604/862 atomic regions from SNP 181028 to 181628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,878 DEBUG Processing 566/910 atomic regions from SNP 169566 to 170166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,895 DEBUG Processing 40/236 atomic regions from SNP 11778 to 12380 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:32,989 DEBUG Processing 389/653 atomic regions from SNP 116584 to 117184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,996 DEBUG Processing 492/1028 atomic regions from SNP 147376 to 147976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,027 DEBUG Processing 450/1138 atomic regions from SNP 134770 to 135370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,039 DEBUG Processing 605/862 atomic regions from SNP 181328 to 181928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,100 DEBUG Processing 41/236 atomic regions from SNP 12080 to 12682 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:33,131 DEBUG Processing 567/910 atomic regions from SNP 169866 to 170466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,203 DEBUG Processing 390/653 atomic regions from SNP 116884 to 117484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,235 DEBUG Processing 493/1028 atomic regions from SNP 147676 to 148276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,252 DEBUG Processing 606/862 atomic regions from SNP 181628 to 182228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,277 DEBUG Processing 451/1138 atomic regions from SNP 135070 to 135670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,304 DEBUG Processing 42/236 atomic regions from SNP 12382 to 12984 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:33,364 DEBUG Processing 568/910 atomic regions from SNP 170166 to 170766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,418 DEBUG Processing 391/653 atomic regions from SNP 117184 to 117784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,477 DEBUG Processing 494/1028 atomic regions from SNP 147976 to 148576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,482 DEBUG Processing 607/862 atomic regions from SNP 181928 to 182528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,509 DEBUG Processing 43/236 atomic regions from SNP 12684 to 13286 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:33,530 DEBUG Processing 452/1138 atomic regions from SNP 135370 to 135970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,597 DEBUG Processing 569/910 atomic regions from SNP 170466 to 171066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,630 DEBUG Processing 392/653 atomic regions from SNP 117484 to 118084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,714 DEBUG Processing 44/236 atomic regions from SNP 12986 to 13588 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:33,718 DEBUG Processing 608/862 atomic regions from SNP 182228 to 182828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,721 DEBUG Processing 495/1028 atomic regions from SNP 148276 to 148876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,785 DEBUG Processing 453/1138 atomic regions from SNP 135670 to 136270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,840 DEBUG Processing 393/653 atomic regions from SNP 117784 to 118384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,852 DEBUG Processing 570/910 atomic regions from SNP 170766 to 171366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,918 DEBUG Processing 45/236 atomic regions from SNP 13288 to 13890 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:33,963 DEBUG Processing 609/862 atomic regions from SNP 182528 to 183128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,964 DEBUG Processing 496/1028 atomic regions from SNP 148576 to 149176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,032 DEBUG Processing 454/1138 atomic regions from SNP 135970 to 136570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,053 DEBUG Processing 394/653 atomic regions from SNP 118084 to 118684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,106 DEBUG Processing 571/910 atomic regions from SNP 171066 to 171666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,128 DEBUG Processing 46/236 atomic regions from SNP 13590 to 14191 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:34,203 DEBUG Processing 610/862 atomic regions from SNP 182828 to 183428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,206 DEBUG Processing 497/1028 atomic regions from SNP 148876 to 149476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,268 DEBUG Processing 395/653 atomic regions from SNP 118384 to 118984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,282 DEBUG Processing 455/1138 atomic regions from SNP 136270 to 136870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,335 DEBUG Processing 572/910 atomic regions from SNP 171366 to 171966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,339 DEBUG Processing 47/236 atomic regions from SNP 13891 to 14492 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:34,442 DEBUG Processing 611/862 atomic regions from SNP 183128 to 183728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,456 DEBUG Processing 498/1028 atomic regions from SNP 149176 to 149776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,482 DEBUG Processing 396/653 atomic regions from SNP 118684 to 119284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,531 DEBUG Processing 456/1138 atomic regions from SNP 136570 to 137170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,561 DEBUG Processing 573/910 atomic regions from SNP 171666 to 172266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,561 DEBUG Processing 48/236 atomic regions from SNP 14192 to 14793 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:34,659 DEBUG Processing 612/862 atomic regions from SNP 183428 to 184028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,696 DEBUG Processing 397/653 atomic regions from SNP 118984 to 119584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,698 DEBUG Processing 499/1028 atomic regions from SNP 149476 to 150076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,781 DEBUG Processing 457/1138 atomic regions from SNP 136870 to 137470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,787 DEBUG Processing 574/910 atomic regions from SNP 171966 to 172566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,795 DEBUG Processing 49/236 atomic regions from SNP 14493 to 15094 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:34,885 DEBUG Processing 613/862 atomic regions from SNP 183728 to 184328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,905 DEBUG Processing 398/653 atomic regions from SNP 119284 to 119884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,940 DEBUG Processing 500/1028 atomic regions from SNP 149776 to 150376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,001 DEBUG Processing 50/236 atomic regions from SNP 14794 to 15395 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:35,030 DEBUG Processing 575/910 atomic regions from SNP 172266 to 172866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,030 DEBUG Processing 458/1138 atomic regions from SNP 137170 to 137770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,113 DEBUG Processing 614/862 atomic regions from SNP 184028 to 184628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,122 DEBUG Processing 399/653 atomic regions from SNP 119584 to 120184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,182 DEBUG Processing 501/1028 atomic regions from SNP 150076 to 150676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,213 DEBUG Processing 51/236 atomic regions from SNP 15095 to 15696 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:35,282 DEBUG Processing 459/1138 atomic regions from SNP 137470 to 138070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,291 DEBUG Processing 576/910 atomic regions from SNP 172566 to 173166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,328 DEBUG Processing 615/862 atomic regions from SNP 184328 to 184928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,339 DEBUG Processing 400/653 atomic regions from SNP 119884 to 120484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,425 DEBUG Processing 502/1028 atomic regions from SNP 150376 to 150976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,427 DEBUG Processing 52/236 atomic regions from SNP 15396 to 15997 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:35,533 DEBUG Processing 460/1138 atomic regions from SNP 137770 to 138370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,543 DEBUG Processing 616/862 atomic regions from SNP 184628 to 185228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,549 DEBUG Processing 577/910 atomic regions from SNP 172866 to 173466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,559 DEBUG Processing 401/653 atomic regions from SNP 120184 to 120784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,641 DEBUG Processing 53/236 atomic regions from SNP 15697 to 16298 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:35,666 DEBUG Processing 503/1028 atomic regions from SNP 150676 to 151276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,758 DEBUG Processing 617/862 atomic regions from SNP 184928 to 185528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,775 DEBUG Processing 402/653 atomic regions from SNP 120484 to 121084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,782 DEBUG Processing 461/1138 atomic regions from SNP 138070 to 138670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,801 DEBUG Processing 578/910 atomic regions from SNP 173166 to 173766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,854 DEBUG Processing 54/236 atomic regions from SNP 15998 to 16599 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:35,904 DEBUG Processing 504/1028 atomic regions from SNP 150976 to 151576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,975 DEBUG Processing 618/862 atomic regions from SNP 185228 to 185828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,998 DEBUG Processing 403/653 atomic regions from SNP 120784 to 121384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,032 DEBUG Processing 462/1138 atomic regions from SNP 138370 to 138970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,040 DEBUG Processing 579/910 atomic regions from SNP 173466 to 174066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,070 DEBUG Processing 55/236 atomic regions from SNP 16299 to 16900 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,143 DEBUG Processing 505/1028 atomic regions from SNP 151276 to 151876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,189 DEBUG Processing 619/862 atomic regions from SNP 185528 to 186128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,212 DEBUG Processing 404/653 atomic regions from SNP 121084 to 121684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,282 DEBUG Processing 463/1138 atomic regions from SNP 138670 to 139270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,283 DEBUG Processing 56/236 atomic regions from SNP 16600 to 17201 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,295 DEBUG Processing 580/910 atomic regions from SNP 173766 to 174366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,386 DEBUG Processing 506/1028 atomic regions from SNP 151576 to 152176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,424 DEBUG Processing 405/653 atomic regions from SNP 121384 to 121984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,433 DEBUG Processing 620/862 atomic regions from SNP 185828 to 186428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,501 DEBUG Processing 57/236 atomic regions from SNP 16901 to 17502 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,531 DEBUG Processing 464/1138 atomic regions from SNP 138970 to 139570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,548 DEBUG Processing 581/910 atomic regions from SNP 174066 to 174666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,631 DEBUG Processing 507/1028 atomic regions from SNP 151876 to 152476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,639 DEBUG Processing 406/653 atomic regions from SNP 121684 to 122284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,680 DEBUG Processing 621/862 atomic regions from SNP 186128 to 186728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,706 DEBUG Processing 58/236 atomic regions from SNP 17202 to 17803 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,784 DEBUG Processing 465/1138 atomic regions from SNP 139270 to 139870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,789 DEBUG Processing 582/910 atomic regions from SNP 174366 to 174966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,857 DEBUG Processing 407/653 atomic regions from SNP 121984 to 122584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,875 DEBUG Processing 508/1028 atomic regions from SNP 152176 to 152776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,899 DEBUG Processing 622/862 atomic regions from SNP 186428 to 187028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,909 DEBUG Processing 59/236 atomic regions from SNP 17503 to 18104 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,033 DEBUG Processing 466/1138 atomic regions from SNP 139570 to 140170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,037 DEBUG Processing 583/910 atomic regions from SNP 174666 to 175266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,078 DEBUG Processing 408/653 atomic regions from SNP 122284 to 122884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,117 DEBUG Processing 60/236 atomic regions from SNP 17804 to 18405 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,119 DEBUG Processing 623/862 atomic regions from SNP 186728 to 187328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,121 DEBUG Processing 509/1028 atomic regions from SNP 152476 to 153076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,283 DEBUG Processing 467/1138 atomic regions from SNP 139870 to 140470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,288 DEBUG Processing 584/910 atomic regions from SNP 174966 to 175566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,301 DEBUG Processing 409/653 atomic regions from SNP 122584 to 123184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,333 DEBUG Processing 61/236 atomic regions from SNP 18105 to 18706 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,345 DEBUG Processing 624/862 atomic regions from SNP 187028 to 187628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,366 DEBUG Processing 510/1028 atomic regions from SNP 152776 to 153376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,518 DEBUG Processing 410/653 atomic regions from SNP 122884 to 123484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,539 DEBUG Processing 585/910 atomic regions from SNP 175266 to 175866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,543 DEBUG Processing 468/1138 atomic regions from SNP 140170 to 140770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,548 DEBUG Processing 62/236 atomic regions from SNP 18406 to 19007 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,569 DEBUG Processing 625/862 atomic regions from SNP 187328 to 187928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,611 DEBUG Processing 511/1028 atomic regions from SNP 153076 to 153676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,731 DEBUG Processing 411/653 atomic regions from SNP 123184 to 123784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,760 DEBUG Processing 63/236 atomic regions from SNP 18707 to 19308 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,791 DEBUG Processing 626/862 atomic regions from SNP 187628 to 188228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,807 DEBUG Processing 586/910 atomic regions from SNP 175566 to 176166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,807 DEBUG Processing 469/1138 atomic regions from SNP 140470 to 141070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,855 DEBUG Processing 512/1028 atomic regions from SNP 153376 to 153976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,943 DEBUG Processing 412/653 atomic regions from SNP 123484 to 124084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,967 DEBUG Processing 64/236 atomic regions from SNP 19008 to 19609 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,012 DEBUG Processing 627/862 atomic regions from SNP 187928 to 188528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,064 DEBUG Processing 587/910 atomic regions from SNP 175866 to 176466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,085 DEBUG Processing 470/1138 atomic regions from SNP 140770 to 141370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,098 DEBUG Processing 513/1028 atomic regions from SNP 153676 to 154276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,155 DEBUG Processing 413/653 atomic regions from SNP 123784 to 124384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,170 DEBUG Processing 65/236 atomic regions from SNP 19309 to 19910 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,230 DEBUG Processing 628/862 atomic regions from SNP 188228 to 188828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,316 DEBUG Processing 588/910 atomic regions from SNP 176166 to 176766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,341 DEBUG Processing 514/1028 atomic regions from SNP 153976 to 154576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,363 DEBUG Processing 471/1138 atomic regions from SNP 141070 to 141670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,376 DEBUG Processing 66/236 atomic regions from SNP 19610 to 20211 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,382 DEBUG Processing 414/653 atomic regions from SNP 124084 to 124684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,449 DEBUG Processing 629/862 atomic regions from SNP 188528 to 189128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,555 DEBUG Processing 589/910 atomic regions from SNP 176466 to 177066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,585 DEBUG Processing 67/236 atomic regions from SNP 19911 to 20512 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,587 DEBUG Processing 515/1028 atomic regions from SNP 154276 to 154876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,617 DEBUG Processing 472/1138 atomic regions from SNP 141370 to 141970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,623 DEBUG Processing 415/653 atomic regions from SNP 124384 to 124984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,691 DEBUG Processing 630/862 atomic regions from SNP 188828 to 189428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,780 DEBUG Processing 590/910 atomic regions from SNP 176766 to 177366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,792 DEBUG Processing 68/236 atomic regions from SNP 20212 to 20813 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,834 DEBUG Processing 516/1028 atomic regions from SNP 154576 to 155176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,838 DEBUG Processing 416/653 atomic regions from SNP 124684 to 125284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,868 DEBUG Processing 473/1138 atomic regions from SNP 141670 to 142270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,935 DEBUG Processing 631/862 atomic regions from SNP 189128 to 189728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,998 DEBUG Processing 69/236 atomic regions from SNP 20513 to 21114 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,020 DEBUG Processing 591/910 atomic regions from SNP 177066 to 177666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,055 DEBUG Processing 417/653 atomic regions from SNP 124984 to 125584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,077 DEBUG Processing 517/1028 atomic regions from SNP 154876 to 155476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,116 DEBUG Processing 474/1138 atomic regions from SNP 141970 to 142570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,182 DEBUG Processing 632/862 atomic regions from SNP 189428 to 190028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,203 DEBUG Processing 70/236 atomic regions from SNP 20814 to 21415 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,273 DEBUG Processing 592/910 atomic regions from SNP 177366 to 177966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,292 DEBUG Processing 418/653 atomic regions from SNP 125284 to 125884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,319 DEBUG Processing 518/1028 atomic regions from SNP 155176 to 155776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,365 DEBUG Processing 475/1138 atomic regions from SNP 142270 to 142870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,407 DEBUG Processing 71/236 atomic regions from SNP 21115 to 21716 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,419 DEBUG Processing 633/862 atomic regions from SNP 189728 to 190328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,531 DEBUG Processing 593/910 atomic regions from SNP 177666 to 178266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,532 DEBUG Processing 419/653 atomic regions from SNP 125584 to 126184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,559 DEBUG Processing 519/1028 atomic regions from SNP 155476 to 156076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,611 DEBUG Processing 72/236 atomic regions from SNP 21416 to 22017 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,613 DEBUG Processing 476/1138 atomic regions from SNP 142570 to 143170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,653 DEBUG Processing 634/862 atomic regions from SNP 190028 to 190628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,775 DEBUG Processing 420/653 atomic regions from SNP 125884 to 126484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,776 DEBUG Processing 594/910 atomic regions from SNP 177966 to 178566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,816 DEBUG Processing 73/236 atomic regions from SNP 21717 to 22318 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,819 DEBUG Processing 520/1028 atomic regions from SNP 155776 to 156376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,862 DEBUG Processing 477/1138 atomic regions from SNP 142870 to 143470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,893 DEBUG Processing 635/862 atomic regions from SNP 190328 to 190928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,000 DEBUG Processing 595/910 atomic regions from SNP 178266 to 178866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,017 DEBUG Processing 421/653 atomic regions from SNP 126184 to 126784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,023 DEBUG Processing 74/236 atomic regions from SNP 22018 to 22619 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,070 DEBUG Processing 521/1028 atomic regions from SNP 156076 to 156676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,112 DEBUG Processing 478/1138 atomic regions from SNP 143170 to 143770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,139 DEBUG Processing 636/862 atomic regions from SNP 190628 to 191228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,223 DEBUG Processing 596/910 atomic regions from SNP 178566 to 179166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,229 DEBUG Processing 75/236 atomic regions from SNP 22319 to 22920 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,234 DEBUG Processing 422/653 atomic regions from SNP 126484 to 127084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,336 DEBUG Processing 522/1028 atomic regions from SNP 156376 to 156976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,361 DEBUG Processing 479/1138 atomic regions from SNP 143470 to 144070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,380 DEBUG Processing 637/862 atomic regions from SNP 190928 to 191528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,436 DEBUG Processing 76/236 atomic regions from SNP 22620 to 23221 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,458 DEBUG Processing 597/910 atomic regions from SNP 178866 to 179466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,476 DEBUG Processing 423/653 atomic regions from SNP 126784 to 127384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,607 DEBUG Processing 523/1028 atomic regions from SNP 156676 to 157276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,612 DEBUG Processing 480/1138 atomic regions from SNP 143770 to 144370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,629 DEBUG Processing 638/862 atomic regions from SNP 191228 to 191828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,642 DEBUG Processing 77/236 atomic regions from SNP 22921 to 23522 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,687 DEBUG Processing 598/910 atomic regions from SNP 179166 to 179766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,722 DEBUG Processing 424/653 atomic regions from SNP 127084 to 127684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,848 DEBUG Processing 78/236 atomic regions from SNP 23222 to 23823 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,863 DEBUG Processing 481/1138 atomic regions from SNP 144070 to 144670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,882 DEBUG Processing 524/1028 atomic regions from SNP 156976 to 157576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,889 DEBUG Processing 639/862 atomic regions from SNP 191528 to 192128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,912 DEBUG Processing 599/910 atomic regions from SNP 179466 to 180066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,959 DEBUG Processing 425/653 atomic regions from SNP 127384 to 127984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,052 DEBUG Processing 79/236 atomic regions from SNP 23523 to 24124 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,119 DEBUG Processing 482/1138 atomic regions from SNP 144370 to 144970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,134 DEBUG Processing 600/910 atomic regions from SNP 179766 to 180366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,135 DEBUG Processing 640/862 atomic regions from SNP 191828 to 192428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,148 DEBUG Processing 525/1028 atomic regions from SNP 157276 to 157876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,190 DEBUG Processing 426/653 atomic regions from SNP 127684 to 128284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,258 DEBUG Processing 80/236 atomic regions from SNP 23824 to 24425 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,371 DEBUG Processing 601/910 atomic regions from SNP 180066 to 180666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,387 DEBUG Processing 641/862 atomic regions from SNP 192128 to 192728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,394 DEBUG Processing 483/1138 atomic regions from SNP 144670 to 145270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,404 DEBUG Processing 526/1028 atomic regions from SNP 157576 to 158176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,437 DEBUG Processing 427/653 atomic regions from SNP 127984 to 128584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,470 DEBUG Processing 81/236 atomic regions from SNP 24125 to 24726 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,626 DEBUG Processing 642/862 atomic regions from SNP 192428 to 193028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,629 DEBUG Processing 602/910 atomic regions from SNP 180366 to 180966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,663 DEBUG Processing 527/1028 atomic regions from SNP 157876 to 158476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,674 DEBUG Processing 428/653 atomic regions from SNP 128284 to 128884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,675 DEBUG Processing 484/1138 atomic regions from SNP 144970 to 145570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,695 DEBUG Processing 82/236 atomic regions from SNP 24426 to 25027 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,844 DEBUG Processing 643/862 atomic regions from SNP 192728 to 193328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,878 DEBUG Processing 603/910 atomic regions from SNP 180666 to 181266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,903 DEBUG Processing 83/236 atomic regions from SNP 24727 to 25328 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,905 DEBUG Processing 429/653 atomic regions from SNP 128584 to 129184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,917 DEBUG Processing 528/1028 atomic regions from SNP 158176 to 158776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,948 DEBUG Processing 485/1138 atomic regions from SNP 145270 to 145870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,076 DEBUG Processing 644/862 atomic regions from SNP 193028 to 193628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,115 DEBUG Processing 84/236 atomic regions from SNP 25028 to 25629 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,127 DEBUG Processing 604/910 atomic regions from SNP 180966 to 181566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,128 DEBUG Processing 430/653 atomic regions from SNP 128884 to 129484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,190 DEBUG Processing 529/1028 atomic regions from SNP 158476 to 159076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,204 DEBUG Processing 486/1138 atomic regions from SNP 145570 to 146170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,290 DEBUG Processing 645/862 atomic regions from SNP 193328 to 193928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,325 DEBUG Processing 85/236 atomic regions from SNP 25329 to 25930 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,377 DEBUG Processing 431/653 atomic regions from SNP 129184 to 129784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,381 DEBUG Processing 605/910 atomic regions from SNP 181266 to 181866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,461 DEBUG Processing 530/1028 atomic regions from SNP 158776 to 159376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,470 DEBUG Processing 487/1138 atomic regions from SNP 145870 to 146470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,503 DEBUG Processing 646/862 atomic regions from SNP 193628 to 194228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,532 DEBUG Processing 86/236 atomic regions from SNP 25630 to 26231 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,617 DEBUG Processing 432/653 atomic regions from SNP 129484 to 130084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,642 DEBUG Processing 606/910 atomic regions from SNP 181566 to 182166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,719 DEBUG Processing 647/862 atomic regions from SNP 193928 to 194528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,726 DEBUG Processing 531/1028 atomic regions from SNP 159076 to 159676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,736 DEBUG Processing 87/236 atomic regions from SNP 25931 to 26532 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,744 DEBUG Processing 488/1138 atomic regions from SNP 146170 to 146770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,850 DEBUG Processing 433/653 atomic regions from SNP 129784 to 130384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,906 DEBUG Processing 607/910 atomic regions from SNP 181866 to 182466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,934 DEBUG Processing 648/862 atomic regions from SNP 194228 to 194828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,943 DEBUG Processing 88/236 atomic regions from SNP 26232 to 26833 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,997 DEBUG Processing 532/1028 atomic regions from SNP 159376 to 159976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,029 DEBUG Processing 489/1138 atomic regions from SNP 146470 to 147070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,075 DEBUG Processing 434/653 atomic regions from SNP 130084 to 130684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,147 DEBUG Processing 89/236 atomic regions from SNP 26533 to 27134 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,148 DEBUG Processing 649/862 atomic regions from SNP 194528 to 195128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,168 DEBUG Processing 608/910 atomic regions from SNP 182166 to 182766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,249 DEBUG Processing 533/1028 atomic regions from SNP 159676 to 160276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,305 DEBUG Processing 435/653 atomic regions from SNP 130384 to 130984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,310 DEBUG Processing 490/1138 atomic regions from SNP 146770 to 147370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,352 DEBUG Processing 90/236 atomic regions from SNP 26834 to 27435 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,364 DEBUG Processing 650/862 atomic regions from SNP 194828 to 195428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,431 DEBUG Processing 609/910 atomic regions from SNP 182466 to 183066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,490 DEBUG Processing 534/1028 atomic regions from SNP 159976 to 160576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,524 DEBUG Processing 436/653 atomic regions from SNP 130684 to 131284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,557 DEBUG Processing 91/236 atomic regions from SNP 27135 to 27736 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,586 DEBUG Processing 491/1138 atomic regions from SNP 147070 to 147670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,600 DEBUG Processing 651/862 atomic regions from SNP 195128 to 195728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,687 DEBUG Processing 610/910 atomic regions from SNP 182766 to 183366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,730 DEBUG Processing 535/1028 atomic regions from SNP 160276 to 160876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,738 DEBUG Processing 437/653 atomic regions from SNP 130984 to 131584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,760 DEBUG Processing 92/236 atomic regions from SNP 27436 to 28037 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,842 DEBUG Processing 492/1138 atomic regions from SNP 147370 to 147970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,842 DEBUG Processing 652/862 atomic regions from SNP 195428 to 196028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,937 DEBUG Processing 611/910 atomic regions from SNP 183066 to 183666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,961 DEBUG Processing 438/653 atomic regions from SNP 131284 to 131884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,968 DEBUG Processing 536/1028 atomic regions from SNP 160576 to 161176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,969 DEBUG Processing 93/236 atomic regions from SNP 27737 to 28338 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,074 DEBUG Processing 653/862 atomic regions from SNP 195728 to 196328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,108 DEBUG Processing 493/1138 atomic regions from SNP 147670 to 148270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,189 DEBUG Processing 612/910 atomic regions from SNP 183366 to 183966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,194 DEBUG Processing 94/236 atomic regions from SNP 28038 to 28639 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,207 DEBUG Processing 537/1028 atomic regions from SNP 160876 to 161476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,208 DEBUG Processing 439/653 atomic regions from SNP 131584 to 132184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,289 DEBUG Processing 654/862 atomic regions from SNP 196028 to 196628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,385 DEBUG Processing 494/1138 atomic regions from SNP 147970 to 148570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,404 DEBUG Processing 95/236 atomic regions from SNP 28339 to 28940 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,427 DEBUG Processing 613/910 atomic regions from SNP 183666 to 184266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,445 DEBUG Processing 538/1028 atomic regions from SNP 161176 to 161776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,450 DEBUG Processing 440/653 atomic regions from SNP 131884 to 132484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,504 DEBUG Processing 655/862 atomic regions from SNP 196328 to 196928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,611 DEBUG Processing 96/236 atomic regions from SNP 28640 to 29241 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,654 DEBUG Processing 614/910 atomic regions from SNP 183966 to 184566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,657 DEBUG Processing 495/1138 atomic regions from SNP 148270 to 148870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,687 DEBUG Processing 539/1028 atomic regions from SNP 161476 to 162076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,691 DEBUG Processing 441/653 atomic regions from SNP 132184 to 132784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,719 DEBUG Processing 656/862 atomic regions from SNP 196628 to 197228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,816 DEBUG Processing 97/236 atomic regions from SNP 28941 to 29542 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,880 DEBUG Processing 615/910 atomic regions from SNP 184266 to 184866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,910 DEBUG Processing 442/653 atomic regions from SNP 132484 to 133084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,927 DEBUG Processing 496/1138 atomic regions from SNP 148570 to 149170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,931 DEBUG Processing 540/1028 atomic regions from SNP 161776 to 162376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,942 DEBUG Processing 657/862 atomic regions from SNP 196928 to 197528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,019 DEBUG Processing 98/236 atomic regions from SNP 29242 to 29843 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,104 DEBUG Processing 616/910 atomic regions from SNP 184566 to 185166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,126 DEBUG Processing 443/653 atomic regions from SNP 132784 to 133384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,168 DEBUG Processing 658/862 atomic regions from SNP 197228 to 197828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,176 DEBUG Processing 541/1028 atomic regions from SNP 162076 to 162676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,212 DEBUG Processing 497/1138 atomic regions from SNP 148870 to 149470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,223 DEBUG Processing 99/236 atomic regions from SNP 29543 to 30144 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,326 DEBUG Processing 617/910 atomic regions from SNP 184866 to 185466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,342 DEBUG Processing 444/653 atomic regions from SNP 133084 to 133684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,394 DEBUG Processing 659/862 atomic regions from SNP 197528 to 198128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,420 DEBUG Processing 542/1028 atomic regions from SNP 162376 to 162976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,428 DEBUG Processing 100/236 atomic regions from SNP 29844 to 30445 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,490 DEBUG Processing 498/1138 atomic regions from SNP 149170 to 149770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,550 DEBUG Processing 618/910 atomic regions from SNP 185166 to 185766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,557 DEBUG Processing 445/653 atomic regions from SNP 133384 to 133984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,628 DEBUG Processing 660/862 atomic regions from SNP 197828 to 198428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,635 DEBUG Processing 101/236 atomic regions from SNP 30145 to 30746 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,662 DEBUG Processing 543/1028 atomic regions from SNP 162676 to 163276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,764 DEBUG Processing 499/1138 atomic regions from SNP 149470 to 150070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,776 DEBUG Processing 446/653 atomic regions from SNP 133684 to 134284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,779 DEBUG Processing 619/910 atomic regions from SNP 185466 to 186066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,839 DEBUG Processing 102/236 atomic regions from SNP 30446 to 31047 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,849 DEBUG Processing 661/862 atomic regions from SNP 198128 to 198728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,907 DEBUG Processing 544/1028 atomic regions from SNP 162976 to 163576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,995 DEBUG Processing 447/653 atomic regions from SNP 133984 to 134584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,006 DEBUG Processing 620/910 atomic regions from SNP 185766 to 186366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,032 DEBUG Processing 500/1138 atomic regions from SNP 149770 to 150370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,048 DEBUG Processing 103/236 atomic regions from SNP 30747 to 31348 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,065 DEBUG Processing 662/862 atomic regions from SNP 198428 to 199028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,144 DEBUG Processing 545/1028 atomic regions from SNP 163276 to 163876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,230 DEBUG Processing 448/653 atomic regions from SNP 134284 to 134884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,240 DEBUG Processing 621/910 atomic regions from SNP 186066 to 186666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,254 DEBUG Processing 104/236 atomic regions from SNP 31048 to 31649 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,282 DEBUG Processing 663/862 atomic regions from SNP 198728 to 199328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,314 DEBUG Processing 501/1138 atomic regions from SNP 150070 to 150670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,383 DEBUG Processing 546/1028 atomic regions from SNP 163576 to 164176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,460 DEBUG Processing 105/236 atomic regions from SNP 31349 to 31950 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,463 DEBUG Processing 622/910 atomic regions from SNP 186366 to 186966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,479 DEBUG Processing 449/653 atomic regions from SNP 134584 to 135184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,499 DEBUG Processing 664/862 atomic regions from SNP 199028 to 199628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,585 DEBUG Processing 502/1138 atomic regions from SNP 150370 to 150970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,622 DEBUG Processing 547/1028 atomic regions from SNP 163876 to 164476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,666 DEBUG Processing 106/236 atomic regions from SNP 31650 to 32251 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,688 DEBUG Processing 623/910 atomic regions from SNP 186666 to 187266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,714 DEBUG Processing 665/862 atomic regions from SNP 199328 to 199928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,720 DEBUG Processing 450/653 atomic regions from SNP 134884 to 135484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,840 DEBUG Processing 503/1138 atomic regions from SNP 150670 to 151270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,862 DEBUG Processing 548/1028 atomic regions from SNP 164176 to 164776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,873 DEBUG Processing 107/236 atomic regions from SNP 31951 to 32552 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,914 DEBUG Processing 624/910 atomic regions from SNP 186966 to 187566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,929 DEBUG Processing 666/862 atomic regions from SNP 199628 to 200228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,954 DEBUG Processing 451/653 atomic regions from SNP 135184 to 135784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,078 DEBUG Processing 108/236 atomic regions from SNP 32252 to 32853 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,088 DEBUG Processing 504/1138 atomic regions from SNP 150970 to 151570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,102 DEBUG Processing 549/1028 atomic regions from SNP 164476 to 165076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,140 DEBUG Processing 625/910 atomic regions from SNP 187266 to 187866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,145 DEBUG Processing 667/862 atomic regions from SNP 199928 to 200528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,170 DEBUG Processing 452/653 atomic regions from SNP 135484 to 136084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,281 DEBUG Processing 109/236 atomic regions from SNP 32553 to 33154 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,339 DEBUG Processing 505/1138 atomic regions from SNP 151270 to 151870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,347 DEBUG Processing 550/1028 atomic regions from SNP 164776 to 165376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,363 DEBUG Processing 668/862 atomic regions from SNP 200228 to 200828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,369 DEBUG Processing 626/910 atomic regions from SNP 187566 to 188166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,385 DEBUG Processing 453/653 atomic regions from SNP 135784 to 136384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,483 DEBUG Processing 110/236 atomic regions from SNP 32854 to 33455 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,583 DEBUG Processing 669/862 atomic regions from SNP 200528 to 201128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,593 DEBUG Processing 506/1138 atomic regions from SNP 151570 to 152170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,593 DEBUG Processing 551/1028 atomic regions from SNP 165076 to 165676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,600 DEBUG Processing 627/910 atomic regions from SNP 187866 to 188466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,602 DEBUG Processing 454/653 atomic regions from SNP 136084 to 136684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,684 DEBUG Processing 111/236 atomic regions from SNP 33155 to 33756 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,819 DEBUG Processing 455/653 atomic regions from SNP 136384 to 136984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,825 DEBUG Processing 670/862 atomic regions from SNP 200828 to 201428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,831 DEBUG Processing 628/910 atomic regions from SNP 188166 to 188766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,842 DEBUG Processing 552/1028 atomic regions from SNP 165376 to 165976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,847 DEBUG Processing 507/1138 atomic regions from SNP 151870 to 152470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,887 DEBUG Processing 112/236 atomic regions from SNP 33456 to 34057 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,033 DEBUG Processing 456/653 atomic regions from SNP 136684 to 137284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,058 DEBUG Processing 671/862 atomic regions from SNP 201128 to 201728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,062 DEBUG Processing 629/910 atomic regions from SNP 188466 to 189066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,092 DEBUG Processing 553/1028 atomic regions from SNP 165676 to 166276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,094 DEBUG Processing 113/236 atomic regions from SNP 33757 to 34358 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,102 DEBUG Processing 508/1138 atomic regions from SNP 152170 to 152770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,248 DEBUG Processing 457/653 atomic regions from SNP 136984 to 137584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,292 DEBUG Processing 630/910 atomic regions from SNP 188766 to 189366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,295 DEBUG Processing 672/862 atomic regions from SNP 201428 to 202028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,303 DEBUG Processing 114/236 atomic regions from SNP 34058 to 34659 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,340 DEBUG Processing 554/1028 atomic regions from SNP 165976 to 166576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,357 DEBUG Processing 509/1138 atomic regions from SNP 152470 to 153070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,482 DEBUG Processing 458/653 atomic regions from SNP 137284 to 137884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,512 DEBUG Processing 115/236 atomic regions from SNP 34359 to 34960 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,521 DEBUG Processing 631/910 atomic regions from SNP 189066 to 189666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,548 DEBUG Processing 673/862 atomic regions from SNP 201728 to 202328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,584 DEBUG Processing 555/1028 atomic regions from SNP 166276 to 166876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,607 DEBUG Processing 510/1138 atomic regions from SNP 152770 to 153370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,708 DEBUG Processing 459/653 atomic regions from SNP 137584 to 138184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,720 DEBUG Processing 116/236 atomic regions from SNP 34660 to 35261 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,750 DEBUG Processing 632/910 atomic regions from SNP 189366 to 189966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,796 DEBUG Processing 674/862 atomic regions from SNP 202028 to 202628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,825 DEBUG Processing 556/1028 atomic regions from SNP 166576 to 167176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,856 DEBUG Processing 511/1138 atomic regions from SNP 153070 to 153670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,927 DEBUG Processing 117/236 atomic regions from SNP 34961 to 35562 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,938 DEBUG Processing 460/653 atomic regions from SNP 137884 to 138484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,975 DEBUG Processing 633/910 atomic regions from SNP 189666 to 190266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,026 DEBUG Processing 675/862 atomic regions from SNP 202328 to 202928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,066 DEBUG Processing 557/1028 atomic regions from SNP 166876 to 167476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,112 DEBUG Processing 512/1138 atomic regions from SNP 153370 to 153970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,131 DEBUG Processing 118/236 atomic regions from SNP 35262 to 35863 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,154 DEBUG Processing 461/653 atomic regions from SNP 138184 to 138784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,200 DEBUG Processing 634/910 atomic regions from SNP 189966 to 190566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,241 DEBUG Processing 676/862 atomic regions from SNP 202628 to 203228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,308 DEBUG Processing 558/1028 atomic regions from SNP 167176 to 167776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,336 DEBUG Processing 119/236 atomic regions from SNP 35563 to 36164 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,379 DEBUG Processing 462/653 atomic regions from SNP 138484 to 139084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,391 DEBUG Processing 513/1138 atomic regions from SNP 153670 to 154270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,425 DEBUG Processing 635/910 atomic regions from SNP 190266 to 190866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,483 DEBUG Processing 677/862 atomic regions from SNP 202928 to 203528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,542 DEBUG Processing 120/236 atomic regions from SNP 35864 to 36465 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,553 DEBUG Processing 559/1028 atomic regions from SNP 167476 to 168076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,606 DEBUG Processing 463/653 atomic regions from SNP 138784 to 139384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,648 DEBUG Processing 636/910 atomic regions from SNP 190566 to 191166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,665 DEBUG Processing 514/1138 atomic regions from SNP 153970 to 154570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,725 DEBUG Processing 678/862 atomic regions from SNP 203228 to 203828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,746 DEBUG Processing 121/236 atomic regions from SNP 36165 to 36766 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,796 DEBUG Processing 560/1028 atomic regions from SNP 167776 to 168376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,825 DEBUG Processing 464/653 atomic regions from SNP 139084 to 139684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,872 DEBUG Processing 637/910 atomic regions from SNP 190866 to 191466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,934 DEBUG Processing 515/1138 atomic regions from SNP 154270 to 154870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,951 DEBUG Processing 122/236 atomic regions from SNP 36466 to 37067 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,967 DEBUG Processing 679/862 atomic regions from SNP 203528 to 204128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,038 DEBUG Processing 561/1028 atomic regions from SNP 168076 to 168676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,039 DEBUG Processing 465/653 atomic regions from SNP 139384 to 139984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,095 DEBUG Processing 638/910 atomic regions from SNP 191166 to 191766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,156 DEBUG Processing 123/236 atomic regions from SNP 36767 to 37368 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,200 DEBUG Processing 516/1138 atomic regions from SNP 154570 to 155170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,211 DEBUG Processing 680/862 atomic regions from SNP 203828 to 204428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,252 DEBUG Processing 466/653 atomic regions from SNP 139684 to 140284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,282 DEBUG Processing 562/1028 atomic regions from SNP 168376 to 168976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,317 DEBUG Processing 639/910 atomic regions from SNP 191466 to 192066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,359 DEBUG Processing 124/236 atomic regions from SNP 37068 to 37669 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,449 DEBUG Processing 517/1138 atomic regions from SNP 154870 to 155470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,455 DEBUG Processing 681/862 atomic regions from SNP 204128 to 204728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,465 DEBUG Processing 467/653 atomic regions from SNP 139984 to 140584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,528 DEBUG Processing 563/1028 atomic regions from SNP 168676 to 169276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,541 DEBUG Processing 640/910 atomic regions from SNP 191766 to 192366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,575 DEBUG Processing 125/236 atomic regions from SNP 37369 to 37970 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,683 DEBUG Processing 468/653 atomic regions from SNP 140284 to 140884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,691 DEBUG Processing 682/862 atomic regions from SNP 204428 to 205028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,704 DEBUG Processing 518/1138 atomic regions from SNP 155170 to 155770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,765 DEBUG Processing 641/910 atomic regions from SNP 192066 to 192666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,770 DEBUG Processing 564/1028 atomic regions from SNP 168976 to 169576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,812 DEBUG Processing 126/236 atomic regions from SNP 37670 to 38271 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,924 DEBUG Processing 469/653 atomic regions from SNP 140584 to 141184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,932 DEBUG Processing 683/862 atomic regions from SNP 204728 to 205328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,970 DEBUG Processing 519/1138 atomic regions from SNP 155470 to 156070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,999 DEBUG Processing 642/910 atomic regions from SNP 192366 to 192966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,012 DEBUG Processing 565/1028 atomic regions from SNP 169276 to 169876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,029 DEBUG Processing 127/236 atomic regions from SNP 37971 to 38572 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,157 DEBUG Processing 470/653 atomic regions from SNP 140884 to 141484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,173 DEBUG Processing 684/862 atomic regions from SNP 205028 to 205628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,225 DEBUG Processing 643/910 atomic regions from SNP 192666 to 193266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,236 DEBUG Processing 128/236 atomic regions from SNP 38272 to 38873 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,256 DEBUG Processing 520/1138 atomic regions from SNP 155770 to 156370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,261 DEBUG Processing 566/1028 atomic regions from SNP 169576 to 170176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,394 DEBUG Processing 471/653 atomic regions from SNP 141184 to 141784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,415 DEBUG Processing 685/862 atomic regions from SNP 205328 to 205928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,453 DEBUG Processing 644/910 atomic regions from SNP 192966 to 193566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,458 DEBUG Processing 129/236 atomic regions from SNP 38573 to 39174 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,506 DEBUG Processing 567/1028 atomic regions from SNP 169876 to 170476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,542 DEBUG Processing 521/1138 atomic regions from SNP 156070 to 156670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,626 DEBUG Processing 472/653 atomic regions from SNP 141484 to 142084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,654 DEBUG Processing 686/862 atomic regions from SNP 205628 to 206228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,663 DEBUG Processing 130/236 atomic regions from SNP 38874 to 39475 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,678 DEBUG Processing 645/910 atomic regions from SNP 193266 to 193866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,751 DEBUG Processing 568/1028 atomic regions from SNP 170176 to 170776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,814 DEBUG Processing 522/1138 atomic regions from SNP 156370 to 156970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,854 DEBUG Processing 473/653 atomic regions from SNP 141784 to 142384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,871 DEBUG Processing 131/236 atomic regions from SNP 39175 to 39776 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,895 DEBUG Processing 687/862 atomic regions from SNP 205928 to 206528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,901 DEBUG Processing 646/910 atomic regions from SNP 193566 to 194166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,992 DEBUG Processing 569/1028 atomic regions from SNP 170476 to 171076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,075 DEBUG Processing 132/236 atomic regions from SNP 39476 to 40077 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,080 DEBUG Processing 523/1138 atomic regions from SNP 156670 to 157270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,084 DEBUG Processing 474/653 atomic regions from SNP 142084 to 142684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,124 DEBUG Processing 647/910 atomic regions from SNP 193866 to 194466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,135 DEBUG Processing 688/862 atomic regions from SNP 206228 to 206828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,232 DEBUG Processing 570/1028 atomic regions from SNP 170776 to 171376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,288 DEBUG Processing 133/236 atomic regions from SNP 39777 to 40378 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,301 DEBUG Processing 475/653 atomic regions from SNP 142384 to 142984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,348 DEBUG Processing 648/910 atomic regions from SNP 194166 to 194766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,351 DEBUG Processing 524/1138 atomic regions from SNP 156970 to 157570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,382 DEBUG Processing 689/862 atomic regions from SNP 206528 to 207128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,470 DEBUG Processing 571/1028 atomic regions from SNP 171076 to 171676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,496 DEBUG Processing 134/236 atomic regions from SNP 40078 to 40679 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,521 DEBUG Processing 476/653 atomic regions from SNP 142684 to 143284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,578 DEBUG Processing 649/910 atomic regions from SNP 194466 to 195066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,626 DEBUG Processing 690/862 atomic regions from SNP 206828 to 207428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,626 DEBUG Processing 525/1138 atomic regions from SNP 157270 to 157870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,706 DEBUG Processing 135/236 atomic regions from SNP 40379 to 40980 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,711 DEBUG Processing 572/1028 atomic regions from SNP 171376 to 171976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,745 DEBUG Processing 477/653 atomic regions from SNP 142984 to 143584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,822 DEBUG Processing 650/910 atomic regions from SNP 194766 to 195366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,862 DEBUG Processing 691/862 atomic regions from SNP 207128 to 207728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,899 DEBUG Processing 526/1138 atomic regions from SNP 157570 to 158170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,928 DEBUG Processing 136/236 atomic regions from SNP 40680 to 41281 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,952 DEBUG Processing 573/1028 atomic regions from SNP 171676 to 172276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,985 DEBUG Processing 478/653 atomic regions from SNP 143284 to 143884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,068 DEBUG Processing 651/910 atomic regions from SNP 195066 to 195666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,093 DEBUG Processing 692/862 atomic regions from SNP 207428 to 208028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,146 DEBUG Processing 137/236 atomic regions from SNP 40981 to 41582 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,164 DEBUG Processing 527/1138 atomic regions from SNP 157870 to 158470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,193 DEBUG Processing 574/1028 atomic regions from SNP 171976 to 172576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,227 DEBUG Processing 479/653 atomic regions from SNP 143584 to 144184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,303 DEBUG Processing 652/910 atomic regions from SNP 195366 to 195966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,319 DEBUG Processing 693/862 atomic regions from SNP 207728 to 208328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,350 DEBUG Processing 138/236 atomic regions from SNP 41282 to 41883 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,431 DEBUG Processing 528/1138 atomic regions from SNP 158170 to 158770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,435 DEBUG Processing 575/1028 atomic regions from SNP 172276 to 172876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,450 DEBUG Processing 480/653 atomic regions from SNP 143884 to 144484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,541 DEBUG Processing 653/910 atomic regions from SNP 195666 to 196266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,550 DEBUG Processing 139/236 atomic regions from SNP 41583 to 42184 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,556 DEBUG Processing 694/862 atomic regions from SNP 208028 to 208628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,675 DEBUG Processing 481/653 atomic regions from SNP 144184 to 144784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,679 DEBUG Processing 576/1028 atomic regions from SNP 172576 to 173176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,703 DEBUG Processing 529/1138 atomic regions from SNP 158470 to 159070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,749 DEBUG Processing 140/236 atomic regions from SNP 41884 to 42485 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,797 DEBUG Processing 654/910 atomic regions from SNP 195966 to 196566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,803 DEBUG Processing 695/862 atomic regions from SNP 208328 to 208928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,894 DEBUG Processing 482/653 atomic regions from SNP 144484 to 145084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,922 DEBUG Processing 577/1028 atomic regions from SNP 172876 to 173476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,951 DEBUG Processing 141/236 atomic regions from SNP 42185 to 42786 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,983 DEBUG Processing 530/1138 atomic regions from SNP 158770 to 159370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,048 DEBUG Processing 696/862 atomic regions from SNP 208628 to 209228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,059 DEBUG Processing 655/910 atomic regions from SNP 196266 to 196866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,116 DEBUG Processing 483/653 atomic regions from SNP 144784 to 145384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,157 DEBUG Processing 142/236 atomic regions from SNP 42486 to 43087 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,166 DEBUG Processing 578/1028 atomic regions from SNP 173176 to 173776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,254 DEBUG Processing 531/1138 atomic regions from SNP 159070 to 159670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,291 DEBUG Processing 697/862 atomic regions from SNP 208928 to 209528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,309 DEBUG Processing 656/910 atomic regions from SNP 196566 to 197166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,353 DEBUG Processing 484/653 atomic regions from SNP 145084 to 145684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,366 DEBUG Processing 143/236 atomic regions from SNP 42787 to 43388 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,407 DEBUG Processing 579/1028 atomic regions from SNP 173476 to 174076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,526 DEBUG Processing 532/1138 atomic regions from SNP 159370 to 159970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,541 DEBUG Processing 698/862 atomic regions from SNP 209228 to 209828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,557 DEBUG Processing 657/910 atomic regions from SNP 196866 to 197466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,567 DEBUG Processing 485/653 atomic regions from SNP 145384 to 145984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,573 DEBUG Processing 144/236 atomic regions from SNP 43088 to 43689 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,646 DEBUG Processing 580/1028 atomic regions from SNP 173776 to 174376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,777 DEBUG Processing 145/236 atomic regions from SNP 43389 to 43990 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,781 DEBUG Processing 486/653 atomic regions from SNP 145684 to 146284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,781 DEBUG Processing 699/862 atomic regions from SNP 209528 to 210128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,785 DEBUG Processing 658/910 atomic regions from SNP 197166 to 197766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,806 DEBUG Processing 533/1138 atomic regions from SNP 159670 to 160270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,886 DEBUG Processing 581/1028 atomic regions from SNP 174076 to 174676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,981 DEBUG Processing 146/236 atomic regions from SNP 43690 to 44291 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,993 DEBUG Processing 487/653 atomic regions from SNP 145984 to 146584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,012 DEBUG Processing 659/910 atomic regions from SNP 197466 to 198066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,020 DEBUG Processing 700/862 atomic regions from SNP 209828 to 210428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,087 DEBUG Processing 534/1138 atomic regions from SNP 159970 to 160570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,123 DEBUG Processing 582/1028 atomic regions from SNP 174376 to 174976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,184 DEBUG Processing 147/236 atomic regions from SNP 43991 to 44592 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,204 DEBUG Processing 488/653 atomic regions from SNP 146284 to 146884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,237 DEBUG Processing 660/910 atomic regions from SNP 197766 to 198366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,244 DEBUG Processing 701/862 atomic regions from SNP 210128 to 210728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,362 DEBUG Processing 583/1028 atomic regions from SNP 174676 to 175276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,370 DEBUG Processing 535/1138 atomic regions from SNP 160270 to 160870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,391 DEBUG Processing 148/236 atomic regions from SNP 44292 to 44893 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,419 DEBUG Processing 489/653 atomic regions from SNP 146584 to 147184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,462 DEBUG Processing 661/910 atomic regions from SNP 198066 to 198666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,476 DEBUG Processing 702/862 atomic regions from SNP 210428 to 211028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,594 DEBUG Processing 149/236 atomic regions from SNP 44593 to 45194 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,602 DEBUG Processing 584/1028 atomic regions from SNP 174976 to 175576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,634 DEBUG Processing 490/653 atomic regions from SNP 146884 to 147484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,651 DEBUG Processing 536/1138 atomic regions from SNP 160570 to 161170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,687 DEBUG Processing 662/910 atomic regions from SNP 198366 to 198966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,724 DEBUG Processing 703/862 atomic regions from SNP 210728 to 211328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,794 DEBUG Processing 150/236 atomic regions from SNP 44894 to 45495 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,839 DEBUG Processing 585/1028 atomic regions from SNP 175276 to 175876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,847 DEBUG Processing 491/653 atomic regions from SNP 147184 to 147784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,906 DEBUG Processing 537/1138 atomic regions from SNP 160870 to 161470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,918 DEBUG Processing 663/910 atomic regions from SNP 198666 to 199266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,966 DEBUG Processing 704/862 atomic regions from SNP 211028 to 211628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,995 DEBUG Processing 151/236 atomic regions from SNP 45195 to 45796 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,055 DEBUG Processing 492/653 atomic regions from SNP 147484 to 148084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,075 DEBUG Processing 586/1028 atomic regions from SNP 175576 to 176176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,146 DEBUG Processing 664/910 atomic regions from SNP 198966 to 199566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,157 DEBUG Processing 538/1138 atomic regions from SNP 161170 to 161770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,179 DEBUG Processing 705/862 atomic regions from SNP 211328 to 211928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,198 DEBUG Processing 152/236 atomic regions from SNP 45496 to 46097 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,265 DEBUG Processing 493/653 atomic regions from SNP 147784 to 148384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,313 DEBUG Processing 587/1028 atomic regions from SNP 175876 to 176476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,373 DEBUG Processing 665/910 atomic regions from SNP 199266 to 199866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,395 DEBUG Processing 706/862 atomic regions from SNP 211628 to 212228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,404 DEBUG Processing 153/236 atomic regions from SNP 45797 to 46398 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,410 DEBUG Processing 539/1138 atomic regions from SNP 161470 to 162070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,494 DEBUG Processing 494/653 atomic regions from SNP 148084 to 148684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,552 DEBUG Processing 588/1028 atomic regions from SNP 176176 to 176776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,602 DEBUG Processing 666/910 atomic regions from SNP 199566 to 200166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,613 DEBUG Processing 154/236 atomic regions from SNP 46098 to 46699 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,620 DEBUG Processing 707/862 atomic regions from SNP 211928 to 212528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,661 DEBUG Processing 540/1138 atomic regions from SNP 161770 to 162370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,725 DEBUG Processing 495/653 atomic regions from SNP 148384 to 148984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,796 DEBUG Processing 589/1028 atomic regions from SNP 176476 to 177076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,821 DEBUG Processing 155/236 atomic regions from SNP 46399 to 47000 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,830 DEBUG Processing 667/910 atomic regions from SNP 199866 to 200466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,836 DEBUG Processing 708/862 atomic regions from SNP 212228 to 212828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,909 DEBUG Processing 541/1138 atomic regions from SNP 162070 to 162670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,963 DEBUG Processing 496/653 atomic regions from SNP 148684 to 149284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,028 DEBUG Processing 156/236 atomic regions from SNP 46700 to 47301 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,038 DEBUG Processing 590/1028 atomic regions from SNP 176776 to 177376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,053 DEBUG Processing 709/862 atomic regions from SNP 212528 to 213128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,057 DEBUG Processing 668/910 atomic regions from SNP 200166 to 200766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,158 DEBUG Processing 542/1138 atomic regions from SNP 162370 to 162970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,204 DEBUG Processing 497/653 atomic regions from SNP 148984 to 149584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,235 DEBUG Processing 157/236 atomic regions from SNP 47001 to 47602 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,269 DEBUG Processing 710/862 atomic regions from SNP 212828 to 213428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,280 DEBUG Processing 669/910 atomic regions from SNP 200466 to 201066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,281 DEBUG Processing 591/1028 atomic regions from SNP 177076 to 177676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,403 DEBUG Processing 543/1138 atomic regions from SNP 162670 to 163270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,444 DEBUG Processing 158/236 atomic regions from SNP 47302 to 47903 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,455 DEBUG Processing 498/653 atomic regions from SNP 149284 to 149884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,485 DEBUG Processing 711/862 atomic regions from SNP 213128 to 213728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,505 DEBUG Processing 670/910 atomic regions from SNP 200766 to 201366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,524 DEBUG Processing 592/1028 atomic regions from SNP 177376 to 177976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,652 DEBUG Processing 544/1138 atomic regions from SNP 162970 to 163570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,655 DEBUG Processing 159/236 atomic regions from SNP 47603 to 48204 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,701 DEBUG Processing 499/653 atomic regions from SNP 149584 to 150184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,702 DEBUG Processing 712/862 atomic regions from SNP 213428 to 214028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,729 DEBUG Processing 671/910 atomic regions from SNP 201066 to 201666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,763 DEBUG Processing 593/1028 atomic regions from SNP 177676 to 178276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,861 DEBUG Processing 160/236 atomic regions from SNP 47904 to 48505 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,904 DEBUG Processing 545/1138 atomic regions from SNP 163270 to 163870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,920 DEBUG Processing 713/862 atomic regions from SNP 213728 to 214328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,951 DEBUG Processing 500/653 atomic regions from SNP 149884 to 150484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,956 DEBUG Processing 672/910 atomic regions from SNP 201366 to 201966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,001 DEBUG Processing 594/1028 atomic regions from SNP 177976 to 178576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,064 DEBUG Processing 161/236 atomic regions from SNP 48205 to 48806 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,135 DEBUG Processing 714/862 atomic regions from SNP 214028 to 214628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,157 DEBUG Processing 546/1138 atomic regions from SNP 163570 to 164170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,184 DEBUG Processing 673/910 atomic regions from SNP 201666 to 202266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,184 DEBUG Processing 501/653 atomic regions from SNP 150184 to 150784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,259 DEBUG Processing 595/1028 atomic regions from SNP 178276 to 178876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,268 DEBUG Processing 162/236 atomic regions from SNP 48506 to 49107 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,352 DEBUG Processing 715/862 atomic regions from SNP 214328 to 214928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,409 DEBUG Processing 547/1138 atomic regions from SNP 163870 to 164470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,409 DEBUG Processing 674/910 atomic regions from SNP 201966 to 202566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,410 DEBUG Processing 502/653 atomic regions from SNP 150484 to 151084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,475 DEBUG Processing 163/236 atomic regions from SNP 48807 to 49408 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,525 DEBUG Processing 596/1028 atomic regions from SNP 178576 to 179176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,565 DEBUG Processing 716/862 atomic regions from SNP 214628 to 215228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,634 DEBUG Processing 675/910 atomic regions from SNP 202266 to 202866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,637 DEBUG Processing 503/653 atomic regions from SNP 150784 to 151384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,660 DEBUG Processing 548/1138 atomic regions from SNP 164170 to 164770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,685 DEBUG Processing 164/236 atomic regions from SNP 49108 to 49709 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,783 DEBUG Processing 717/862 atomic regions from SNP 214928 to 215528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,792 DEBUG Processing 597/1028 atomic regions from SNP 178876 to 179476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,861 DEBUG Processing 676/910 atomic regions from SNP 202566 to 203166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,867 DEBUG Processing 504/653 atomic regions from SNP 151084 to 151684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,895 DEBUG Processing 165/236 atomic regions from SNP 49409 to 50010 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,910 DEBUG Processing 549/1138 atomic regions from SNP 164470 to 165070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,998 DEBUG Processing 718/862 atomic regions from SNP 215228 to 215828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,054 DEBUG Processing 598/1028 atomic regions from SNP 179176 to 179776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,088 DEBUG Processing 677/910 atomic regions from SNP 202866 to 203466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,101 DEBUG Processing 166/236 atomic regions from SNP 49710 to 50311 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,102 DEBUG Processing 505/653 atomic regions from SNP 151384 to 151984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,162 DEBUG Processing 550/1138 atomic regions from SNP 164770 to 165370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,214 DEBUG Processing 719/862 atomic regions from SNP 215528 to 216128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,307 DEBUG Processing 167/236 atomic regions from SNP 50011 to 50612 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,312 DEBUG Processing 678/910 atomic regions from SNP 203166 to 203766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,315 DEBUG Processing 599/1028 atomic regions from SNP 179476 to 180076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,331 DEBUG Processing 506/653 atomic regions from SNP 151684 to 152284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,413 DEBUG Processing 551/1138 atomic regions from SNP 165070 to 165670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,428 DEBUG Processing 720/862 atomic regions from SNP 215828 to 216428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,514 DEBUG Processing 168/236 atomic regions from SNP 50312 to 50913 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,537 DEBUG Processing 679/910 atomic regions from SNP 203466 to 204066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,557 DEBUG Processing 507/653 atomic regions from SNP 151984 to 152584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,562 DEBUG Processing 600/1028 atomic regions from SNP 179776 to 180376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,642 DEBUG Processing 721/862 atomic regions from SNP 216128 to 216728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,661 DEBUG Processing 552/1138 atomic regions from SNP 165370 to 165970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,722 DEBUG Processing 169/236 atomic regions from SNP 50613 to 51214 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,763 DEBUG Processing 680/910 atomic regions from SNP 203766 to 204366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,770 DEBUG Processing 508/653 atomic regions from SNP 152284 to 152884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,804 DEBUG Processing 601/1028 atomic regions from SNP 180076 to 180676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,856 DEBUG Processing 722/862 atomic regions from SNP 216428 to 217028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,912 DEBUG Processing 553/1138 atomic regions from SNP 165670 to 166270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,932 DEBUG Processing 170/236 atomic regions from SNP 50914 to 51515 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,981 DEBUG Processing 509/653 atomic regions from SNP 152584 to 153184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,988 DEBUG Processing 681/910 atomic regions from SNP 204066 to 204666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,042 DEBUG Processing 602/1028 atomic regions from SNP 180376 to 180976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,071 DEBUG Processing 723/862 atomic regions from SNP 216728 to 217328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,141 DEBUG Processing 171/236 atomic regions from SNP 51215 to 51816 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,163 DEBUG Processing 554/1138 atomic regions from SNP 165970 to 166570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,197 DEBUG Processing 510/653 atomic regions from SNP 152884 to 153484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,217 DEBUG Processing 682/910 atomic regions from SNP 204366 to 204966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,280 DEBUG Processing 603/1028 atomic regions from SNP 180676 to 181276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,284 DEBUG Processing 724/862 atomic regions from SNP 217028 to 217628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,349 DEBUG Processing 172/236 atomic regions from SNP 51516 to 52117 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,415 DEBUG Processing 555/1138 atomic regions from SNP 166270 to 166870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,418 DEBUG Processing 511/653 atomic regions from SNP 153184 to 153784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,471 DEBUG Processing 683/910 atomic regions from SNP 204666 to 205266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,517 DEBUG Processing 604/1028 atomic regions from SNP 180976 to 181576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,519 DEBUG Processing 725/862 atomic regions from SNP 217328 to 217928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,553 DEBUG Processing 173/236 atomic regions from SNP 51817 to 52418 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,650 DEBUG Processing 512/653 atomic regions from SNP 153484 to 154084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,663 DEBUG Processing 556/1138 atomic regions from SNP 166570 to 167170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,712 DEBUG Processing 684/910 atomic regions from SNP 204966 to 205566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,749 DEBUG Processing 726/862 atomic regions from SNP 217628 to 218228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,758 DEBUG Processing 174/236 atomic regions from SNP 52118 to 52719 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,759 DEBUG Processing 605/1028 atomic regions from SNP 181276 to 181876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,892 DEBUG Processing 513/653 atomic regions from SNP 153784 to 154384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,919 DEBUG Processing 557/1138 atomic regions from SNP 166870 to 167470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,946 DEBUG Processing 685/910 atomic regions from SNP 205266 to 205866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,967 DEBUG Processing 727/862 atomic regions from SNP 217928 to 218528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,977 DEBUG Processing 175/236 atomic regions from SNP 52419 to 53020 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,000 DEBUG Processing 606/1028 atomic regions from SNP 181576 to 182176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,129 DEBUG Processing 514/653 atomic regions from SNP 154084 to 154684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,170 DEBUG Processing 558/1138 atomic regions from SNP 167170 to 167770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,185 DEBUG Processing 686/910 atomic regions from SNP 205566 to 206166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,188 DEBUG Processing 728/862 atomic regions from SNP 218228 to 218828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,208 DEBUG Processing 176/236 atomic regions from SNP 52720 to 53321 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,243 DEBUG Processing 607/1028 atomic regions from SNP 181876 to 182476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,374 DEBUG Processing 515/653 atomic regions from SNP 154384 to 154984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,416 DEBUG Processing 729/862 atomic regions from SNP 218528 to 219128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,418 DEBUG Processing 177/236 atomic regions from SNP 53021 to 53622 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,420 DEBUG Processing 559/1138 atomic regions from SNP 167470 to 168070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,427 DEBUG Processing 687/910 atomic regions from SNP 205866 to 206466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,484 DEBUG Processing 608/1028 atomic regions from SNP 182176 to 182776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,625 DEBUG Processing 516/653 atomic regions from SNP 154684 to 155284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,625 DEBUG Processing 178/236 atomic regions from SNP 53322 to 53923 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,662 DEBUG Processing 730/862 atomic regions from SNP 218828 to 219428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,673 DEBUG Processing 560/1138 atomic regions from SNP 167770 to 168370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,674 DEBUG Processing 688/910 atomic regions from SNP 206166 to 206766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,726 DEBUG Processing 609/1028 atomic regions from SNP 182476 to 183076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,831 DEBUG Processing 179/236 atomic regions from SNP 53623 to 54224 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,872 DEBUG Processing 517/653 atomic regions from SNP 154984 to 155584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,917 DEBUG Processing 731/862 atomic regions from SNP 219128 to 219728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,926 DEBUG Processing 561/1138 atomic regions from SNP 168070 to 168670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,942 DEBUG Processing 689/910 atomic regions from SNP 206466 to 207066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,967 DEBUG Processing 610/1028 atomic regions from SNP 182776 to 183376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,033 DEBUG Processing 180/236 atomic regions from SNP 53924 to 54525 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,112 DEBUG Processing 518/653 atomic regions from SNP 155284 to 155884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,167 DEBUG Processing 732/862 atomic regions from SNP 219428 to 220028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,181 DEBUG Processing 562/1138 atomic regions from SNP 168370 to 168970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,199 DEBUG Processing 690/910 atomic regions from SNP 206766 to 207366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,211 DEBUG Processing 611/1028 atomic regions from SNP 183076 to 183676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,236 DEBUG Processing 181/236 atomic regions from SNP 54225 to 54826 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,344 DEBUG Processing 519/653 atomic regions from SNP 155584 to 156184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,404 DEBUG Processing 733/862 atomic regions from SNP 219728 to 220328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,436 DEBUG Processing 563/1138 atomic regions from SNP 168670 to 169270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,441 DEBUG Processing 691/910 atomic regions from SNP 207066 to 207666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,442 DEBUG Processing 182/236 atomic regions from SNP 54526 to 55127 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,454 DEBUG Processing 612/1028 atomic regions from SNP 183376 to 183976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,583 DEBUG Processing 520/653 atomic regions from SNP 155884 to 156484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,623 DEBUG Processing 734/862 atomic regions from SNP 220028 to 220628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,650 DEBUG Processing 183/236 atomic regions from SNP 54827 to 55428 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,669 DEBUG Processing 692/910 atomic regions from SNP 207366 to 207966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,688 DEBUG Processing 564/1138 atomic regions from SNP 168970 to 169570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,696 DEBUG Processing 613/1028 atomic regions from SNP 183676 to 184276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,822 DEBUG Processing 521/653 atomic regions from SNP 156184 to 156784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,840 DEBUG Processing 735/862 atomic regions from SNP 220328 to 220928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,858 DEBUG Processing 184/236 atomic regions from SNP 55128 to 55729 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,900 DEBUG Processing 693/910 atomic regions from SNP 207666 to 208266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,936 DEBUG Processing 614/1028 atomic regions from SNP 183976 to 184576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,939 DEBUG Processing 565/1138 atomic regions from SNP 169270 to 169870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,059 DEBUG Processing 736/862 atomic regions from SNP 220628 to 221228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,066 DEBUG Processing 522/653 atomic regions from SNP 156484 to 157084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,093 DEBUG Processing 185/236 atomic regions from SNP 55429 to 56030 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,144 DEBUG Processing 694/910 atomic regions from SNP 207966 to 208566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,177 DEBUG Processing 615/1028 atomic regions from SNP 184276 to 184876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,190 DEBUG Processing 566/1138 atomic regions from SNP 169570 to 170170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,275 DEBUG Processing 737/862 atomic regions from SNP 220928 to 221528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,300 DEBUG Processing 186/236 atomic regions from SNP 55730 to 56331 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,311 DEBUG Processing 523/653 atomic regions from SNP 156784 to 157384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,379 DEBUG Processing 695/910 atomic regions from SNP 208266 to 208866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,419 DEBUG Processing 616/1028 atomic regions from SNP 184576 to 185176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,442 DEBUG Processing 567/1138 atomic regions from SNP 169870 to 170470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,489 DEBUG Processing 738/862 atomic regions from SNP 221228 to 221828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,504 DEBUG Processing 187/236 atomic regions from SNP 56031 to 56632 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,553 DEBUG Processing 524/653 atomic regions from SNP 157084 to 157684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,624 DEBUG Processing 696/910 atomic regions from SNP 208566 to 209166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,662 DEBUG Processing 617/1028 atomic regions from SNP 184876 to 185476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,695 DEBUG Processing 568/1138 atomic regions from SNP 170170 to 170770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,706 DEBUG Processing 739/862 atomic regions from SNP 221528 to 222128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,711 DEBUG Processing 188/236 atomic regions from SNP 56332 to 56933 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,801 DEBUG Processing 525/653 atomic regions from SNP 157384 to 157984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,871 DEBUG Processing 697/910 atomic regions from SNP 208866 to 209466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,908 DEBUG Processing 618/1028 atomic regions from SNP 185176 to 185776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,917 DEBUG Processing 189/236 atomic regions from SNP 56633 to 57234 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,923 DEBUG Processing 740/862 atomic regions from SNP 221828 to 222428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,950 DEBUG Processing 569/1138 atomic regions from SNP 170470 to 171070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,048 DEBUG Processing 526/653 atomic regions from SNP 157684 to 158284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,112 DEBUG Processing 698/910 atomic regions from SNP 209166 to 209766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,125 DEBUG Processing 190/236 atomic regions from SNP 56934 to 57535 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,144 DEBUG Processing 741/862 atomic regions from SNP 222128 to 222728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,155 DEBUG Processing 619/1028 atomic regions from SNP 185476 to 186076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,200 DEBUG Processing 570/1138 atomic regions from SNP 170770 to 171370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,286 DEBUG Processing 527/653 atomic regions from SNP 157984 to 158584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,334 DEBUG Processing 191/236 atomic regions from SNP 57235 to 57836 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,341 DEBUG Processing 699/910 atomic regions from SNP 209466 to 210066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,366 DEBUG Processing 742/862 atomic regions from SNP 222428 to 223028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,399 DEBUG Processing 620/1028 atomic regions from SNP 185776 to 186376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,449 DEBUG Processing 571/1138 atomic regions from SNP 171070 to 171670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,531 DEBUG Processing 528/653 atomic regions from SNP 158284 to 158884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,554 DEBUG Processing 192/236 atomic regions from SNP 57536 to 58137 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,569 DEBUG Processing 700/910 atomic regions from SNP 209766 to 210366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,584 DEBUG Processing 743/862 atomic regions from SNP 222728 to 223328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,642 DEBUG Processing 621/1028 atomic regions from SNP 186076 to 186676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,699 DEBUG Processing 572/1138 atomic regions from SNP 171370 to 171970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,778 DEBUG Processing 529/653 atomic regions from SNP 158584 to 159184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,781 DEBUG Processing 193/236 atomic regions from SNP 57837 to 58438 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,796 DEBUG Processing 701/910 atomic regions from SNP 210066 to 210666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,803 DEBUG Processing 744/862 atomic regions from SNP 223028 to 223628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,882 DEBUG Processing 622/1028 atomic regions from SNP 186376 to 186976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,948 DEBUG Processing 573/1138 atomic regions from SNP 171670 to 172270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,008 DEBUG Processing 194/236 atomic regions from SNP 58138 to 58739 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,020 DEBUG Processing 745/862 atomic regions from SNP 223328 to 223928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,022 DEBUG Processing 702/910 atomic regions from SNP 210366 to 210966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,028 DEBUG Processing 530/653 atomic regions from SNP 158884 to 159484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,120 DEBUG Processing 623/1028 atomic regions from SNP 186676 to 187276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,199 DEBUG Processing 574/1138 atomic regions from SNP 171970 to 172570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,237 DEBUG Processing 746/862 atomic regions from SNP 223628 to 224228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,241 DEBUG Processing 195/236 atomic regions from SNP 58439 to 59040 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,248 DEBUG Processing 703/910 atomic regions from SNP 210666 to 211266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,276 DEBUG Processing 531/653 atomic regions from SNP 159184 to 159784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,360 DEBUG Processing 624/1028 atomic regions from SNP 186976 to 187576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,450 DEBUG Processing 575/1138 atomic regions from SNP 172270 to 172870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,455 DEBUG Processing 747/862 atomic regions from SNP 223928 to 224528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,470 DEBUG Processing 196/236 atomic regions from SNP 58740 to 59341 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,475 DEBUG Processing 704/910 atomic regions from SNP 210966 to 211566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,530 DEBUG Processing 532/653 atomic regions from SNP 159484 to 160084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,598 DEBUG Processing 625/1028 atomic regions from SNP 187276 to 187876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,673 DEBUG Processing 748/862 atomic regions from SNP 224228 to 224828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,690 DEBUG Processing 197/236 atomic regions from SNP 59041 to 59642 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,700 DEBUG Processing 705/910 atomic regions from SNP 211266 to 211866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,702 DEBUG Processing 576/1138 atomic regions from SNP 172570 to 173170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,777 DEBUG Processing 533/653 atomic regions from SNP 159784 to 160384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,834 DEBUG Processing 626/1028 atomic regions from SNP 187576 to 188176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,891 DEBUG Processing 749/862 atomic regions from SNP 224528 to 225128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,899 DEBUG Processing 198/236 atomic regions from SNP 59342 to 59943 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,929 DEBUG Processing 706/910 atomic regions from SNP 211566 to 212166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,957 DEBUG Processing 577/1138 atomic regions from SNP 172870 to 173470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,012 DEBUG Processing 534/653 atomic regions from SNP 160084 to 160684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,075 DEBUG Processing 627/1028 atomic regions from SNP 187876 to 188476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,103 DEBUG Processing 199/236 atomic regions from SNP 59643 to 60244 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,109 DEBUG Processing 750/862 atomic regions from SNP 224828 to 225428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,155 DEBUG Processing 707/910 atomic regions from SNP 211866 to 212466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,206 DEBUG Processing 578/1138 atomic regions from SNP 173170 to 173770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,259 DEBUG Processing 535/653 atomic regions from SNP 160384 to 160984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,307 DEBUG Processing 200/236 atomic regions from SNP 59944 to 60545 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,315 DEBUG Processing 628/1028 atomic regions from SNP 188176 to 188776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,327 DEBUG Processing 751/862 atomic regions from SNP 225128 to 225728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,381 DEBUG Processing 708/910 atomic regions from SNP 212166 to 212766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,456 DEBUG Processing 579/1138 atomic regions from SNP 173470 to 174070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,510 DEBUG Processing 536/653 atomic regions from SNP 160684 to 161284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,515 DEBUG Processing 201/236 atomic regions from SNP 60245 to 60846 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,543 DEBUG Processing 752/862 atomic regions from SNP 225428 to 226028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,558 DEBUG Processing 629/1028 atomic regions from SNP 188476 to 189076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,608 DEBUG Processing 709/910 atomic regions from SNP 212466 to 213066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,707 DEBUG Processing 580/1138 atomic regions from SNP 173770 to 174370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,728 DEBUG Processing 202/236 atomic regions from SNP 60546 to 61147 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,755 DEBUG Processing 537/653 atomic regions from SNP 160984 to 161584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,758 DEBUG Processing 753/862 atomic regions from SNP 225728 to 226328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,800 DEBUG Processing 630/1028 atomic regions from SNP 188776 to 189376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,832 DEBUG Processing 710/910 atomic regions from SNP 212766 to 213366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,953 DEBUG Processing 203/236 atomic regions from SNP 60847 to 61448 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,958 DEBUG Processing 581/1138 atomic regions from SNP 174070 to 174670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,975 DEBUG Processing 754/862 atomic regions from SNP 226028 to 226628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,996 DEBUG Processing 538/653 atomic regions from SNP 161284 to 161884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,050 DEBUG Processing 631/1028 atomic regions from SNP 189076 to 189676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,063 DEBUG Processing 711/910 atomic regions from SNP 213066 to 213666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,176 DEBUG Processing 204/236 atomic regions from SNP 61148 to 61749 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,193 DEBUG Processing 755/862 atomic regions from SNP 226328 to 226928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,212 DEBUG Processing 582/1138 atomic regions from SNP 174370 to 174970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,248 DEBUG Processing 539/653 atomic regions from SNP 161584 to 162184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,287 DEBUG Processing 712/910 atomic regions from SNP 213366 to 213966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,290 DEBUG Processing 632/1028 atomic regions from SNP 189376 to 189976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,398 DEBUG Processing 205/236 atomic regions from SNP 61449 to 62050 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,410 DEBUG Processing 756/862 atomic regions from SNP 226628 to 227228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,464 DEBUG Processing 583/1138 atomic regions from SNP 174670 to 175270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,492 DEBUG Processing 540/653 atomic regions from SNP 161884 to 162484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,512 DEBUG Processing 713/910 atomic regions from SNP 213666 to 214266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,530 DEBUG Processing 633/1028 atomic regions from SNP 189676 to 190276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,620 DEBUG Processing 206/236 atomic regions from SNP 61750 to 62351 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,649 DEBUG Processing 757/862 atomic regions from SNP 226928 to 227528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,713 DEBUG Processing 584/1138 atomic regions from SNP 174970 to 175570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,737 DEBUG Processing 714/910 atomic regions from SNP 213966 to 214566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,737 DEBUG Processing 541/653 atomic regions from SNP 162184 to 162784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,770 DEBUG Processing 634/1028 atomic regions from SNP 189976 to 190576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,824 DEBUG Processing 207/236 atomic regions from SNP 62051 to 62652 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,894 DEBUG Processing 758/862 atomic regions from SNP 227228 to 227828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,961 DEBUG Processing 715/910 atomic regions from SNP 214266 to 214866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,965 DEBUG Processing 585/1138 atomic regions from SNP 175270 to 175870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,971 DEBUG Processing 542/653 atomic regions from SNP 162484 to 163084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,008 DEBUG Processing 635/1028 atomic regions from SNP 190276 to 190876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,030 DEBUG Processing 208/236 atomic regions from SNP 62352 to 62953 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,123 DEBUG Processing 759/862 atomic regions from SNP 227528 to 228128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,190 DEBUG Processing 543/653 atomic regions from SNP 162784 to 163384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,192 DEBUG Processing 716/910 atomic regions from SNP 214566 to 215166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,216 DEBUG Processing 586/1138 atomic regions from SNP 175570 to 176170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,236 DEBUG Processing 209/236 atomic regions from SNP 62653 to 63254 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,246 DEBUG Processing 636/1028 atomic regions from SNP 190576 to 191176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,361 DEBUG Processing 760/862 atomic regions from SNP 227828 to 228428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,413 DEBUG Processing 544/653 atomic regions from SNP 163084 to 163684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,422 DEBUG Processing 717/910 atomic regions from SNP 214866 to 215466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,441 DEBUG Processing 210/236 atomic regions from SNP 62954 to 63555 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,465 DEBUG Processing 587/1138 atomic regions from SNP 175870 to 176470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,487 DEBUG Processing 637/1028 atomic regions from SNP 190876 to 191476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,589 DEBUG Processing 761/862 atomic regions from SNP 228128 to 228728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,638 DEBUG Processing 545/653 atomic regions from SNP 163384 to 163984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,647 DEBUG Processing 211/236 atomic regions from SNP 63255 to 63856 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,650 DEBUG Processing 718/910 atomic regions from SNP 215166 to 215766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,716 DEBUG Processing 588/1138 atomic regions from SNP 176170 to 176770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,724 DEBUG Processing 638/1028 atomic regions from SNP 191176 to 191776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,843 DEBUG Processing 762/862 atomic regions from SNP 228428 to 229028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,854 DEBUG Processing 212/236 atomic regions from SNP 63556 to 64157 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,868 DEBUG Processing 546/653 atomic regions from SNP 163684 to 164284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,889 DEBUG Processing 719/910 atomic regions from SNP 215466 to 216066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,963 DEBUG Processing 639/1028 atomic regions from SNP 191476 to 192076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,968 DEBUG Processing 589/1138 atomic regions from SNP 176470 to 177070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,059 DEBUG Processing 213/236 atomic regions from SNP 63857 to 64458 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,093 DEBUG Processing 547/653 atomic regions from SNP 163984 to 164584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,096 DEBUG Processing 763/862 atomic regions from SNP 228728 to 229328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,139 DEBUG Processing 720/910 atomic regions from SNP 215766 to 216366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,201 DEBUG Processing 640/1028 atomic regions from SNP 191776 to 192376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,217 DEBUG Processing 590/1138 atomic regions from SNP 176770 to 177370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,269 DEBUG Processing 214/236 atomic regions from SNP 64158 to 64759 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,331 DEBUG Processing 548/653 atomic regions from SNP 164284 to 164884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,343 DEBUG Processing 764/862 atomic regions from SNP 229028 to 229628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,399 DEBUG Processing 721/910 atomic regions from SNP 216066 to 216666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,442 DEBUG Processing 641/1028 atomic regions from SNP 192076 to 192676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,468 DEBUG Processing 591/1138 atomic regions from SNP 177070 to 177670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,496 DEBUG Processing 215/236 atomic regions from SNP 64459 to 65060 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,573 DEBUG Processing 549/653 atomic regions from SNP 164584 to 165184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,577 DEBUG Processing 765/862 atomic regions from SNP 229328 to 229928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,650 DEBUG Processing 722/910 atomic regions from SNP 216366 to 216966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,686 DEBUG Processing 642/1028 atomic regions from SNP 192376 to 192976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,720 DEBUG Processing 592/1138 atomic regions from SNP 177370 to 177970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,728 DEBUG Processing 216/236 atomic regions from SNP 64760 to 65361 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,800 DEBUG Processing 766/862 atomic regions from SNP 229628 to 230228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,815 DEBUG Processing 550/653 atomic regions from SNP 164884 to 165484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,905 DEBUG Processing 723/910 atomic regions from SNP 216666 to 217266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,928 DEBUG Processing 643/1028 atomic regions from SNP 192676 to 193276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,952 DEBUG Processing 217/236 atomic regions from SNP 65061 to 65662 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,972 DEBUG Processing 593/1138 atomic regions from SNP 177670 to 178270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,038 DEBUG Processing 767/862 atomic regions from SNP 229928 to 230528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,050 DEBUG Processing 551/653 atomic regions from SNP 165184 to 165784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,155 DEBUG Processing 724/910 atomic regions from SNP 216966 to 217566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,170 DEBUG Processing 644/1028 atomic regions from SNP 192976 to 193576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,171 DEBUG Processing 218/236 atomic regions from SNP 65362 to 65963 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,224 DEBUG Processing 594/1138 atomic regions from SNP 177970 to 178570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,284 DEBUG Processing 768/862 atomic regions from SNP 230228 to 230828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,290 DEBUG Processing 552/653 atomic regions from SNP 165484 to 166084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,380 DEBUG Processing 219/236 atomic regions from SNP 65663 to 66264 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,385 DEBUG Processing 725/910 atomic regions from SNP 217266 to 217866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,414 DEBUG Processing 645/1028 atomic regions from SNP 193276 to 193876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,475 DEBUG Processing 595/1138 atomic regions from SNP 178270 to 178870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,514 DEBUG Processing 553/653 atomic regions from SNP 165784 to 166384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,531 DEBUG Processing 769/862 atomic regions from SNP 230528 to 231128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,586 DEBUG Processing 220/236 atomic regions from SNP 65964 to 66565 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,612 DEBUG Processing 726/910 atomic regions from SNP 217566 to 218166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,674 DEBUG Processing 646/1028 atomic regions from SNP 193576 to 194176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,726 DEBUG Processing 596/1138 atomic regions from SNP 178570 to 179170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,759 DEBUG Processing 554/653 atomic regions from SNP 166084 to 166684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,772 DEBUG Processing 770/862 atomic regions from SNP 230828 to 231428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,803 DEBUG Processing 221/236 atomic regions from SNP 66265 to 66866 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,838 DEBUG Processing 727/910 atomic regions from SNP 217866 to 218466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,938 DEBUG Processing 647/1028 atomic regions from SNP 193876 to 194476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,977 DEBUG Processing 597/1138 atomic regions from SNP 178870 to 179470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,990 DEBUG Processing 771/862 atomic regions from SNP 231128 to 231728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,999 DEBUG Processing 555/653 atomic regions from SNP 166384 to 166984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,015 DEBUG Processing 222/236 atomic regions from SNP 66566 to 67167 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,061 DEBUG Processing 728/910 atomic regions from SNP 218166 to 218766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,188 DEBUG Processing 648/1028 atomic regions from SNP 194176 to 194776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,211 DEBUG Processing 772/862 atomic regions from SNP 231428 to 232028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,217 DEBUG Processing 556/653 atomic regions from SNP 166684 to 167284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,226 DEBUG Processing 223/236 atomic regions from SNP 66867 to 67468 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,229 DEBUG Processing 598/1138 atomic regions from SNP 179170 to 179770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,286 DEBUG Processing 729/910 atomic regions from SNP 218466 to 219066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,428 DEBUG Processing 649/1028 atomic regions from SNP 194476 to 195076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,430 DEBUG Processing 773/862 atomic regions from SNP 231728 to 232328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,434 DEBUG Processing 224/236 atomic regions from SNP 67168 to 67769 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,436 DEBUG Processing 557/653 atomic regions from SNP 166984 to 167584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,481 DEBUG Processing 599/1138 atomic regions from SNP 179470 to 180070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,511 DEBUG Processing 730/910 atomic regions from SNP 218766 to 219366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,640 DEBUG Processing 225/236 atomic regions from SNP 67469 to 68070 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,656 DEBUG Processing 558/653 atomic regions from SNP 167284 to 167884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,664 DEBUG Processing 774/862 atomic regions from SNP 232028 to 232628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,670 DEBUG Processing 650/1028 atomic regions from SNP 194776 to 195376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,733 DEBUG Processing 600/1138 atomic regions from SNP 179770 to 180370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,734 DEBUG Processing 731/910 atomic regions from SNP 219066 to 219666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,848 DEBUG Processing 226/236 atomic regions from SNP 67770 to 68371 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,889 DEBUG Processing 559/653 atomic regions from SNP 167584 to 168184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,910 DEBUG Processing 775/862 atomic regions from SNP 232328 to 232928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,911 DEBUG Processing 651/1028 atomic regions from SNP 195076 to 195676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,957 DEBUG Processing 732/910 atomic regions from SNP 219366 to 219966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,981 DEBUG Processing 601/1138 atomic regions from SNP 180070 to 180670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,056 DEBUG Processing 227/236 atomic regions from SNP 68071 to 68672 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,128 DEBUG Processing 560/653 atomic regions from SNP 167884 to 168484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,152 DEBUG Processing 652/1028 atomic regions from SNP 195376 to 195976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,153 DEBUG Processing 776/862 atomic regions from SNP 232628 to 233228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,199 DEBUG Processing 733/910 atomic regions from SNP 219666 to 220266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,234 DEBUG Processing 602/1138 atomic regions from SNP 180370 to 180970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,263 DEBUG Processing 228/236 atomic regions from SNP 68372 to 68973 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,363 DEBUG Processing 561/653 atomic regions from SNP 168184 to 168784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,398 DEBUG Processing 653/1028 atomic regions from SNP 195676 to 196276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,406 DEBUG Processing 777/862 atomic regions from SNP 232928 to 233528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,452 DEBUG Processing 734/910 atomic regions from SNP 219966 to 220566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,468 DEBUG Processing 229/236 atomic regions from SNP 68673 to 69274 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,485 DEBUG Processing 603/1138 atomic regions from SNP 180670 to 181270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,595 DEBUG Processing 562/653 atomic regions from SNP 168484 to 169084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,640 DEBUG Processing 654/1028 atomic regions from SNP 195976 to 196576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,658 DEBUG Processing 778/862 atomic regions from SNP 233228 to 233828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,673 DEBUG Processing 230/236 atomic regions from SNP 68974 to 69575 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,705 DEBUG Processing 735/910 atomic regions from SNP 220266 to 220866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,755 DEBUG Processing 604/1138 atomic regions from SNP 180970 to 181570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,828 DEBUG Processing 563/653 atomic regions from SNP 168784 to 169384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,879 DEBUG Processing 231/236 atomic regions from SNP 69275 to 69876 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,883 DEBUG Processing 655/1028 atomic regions from SNP 196276 to 196876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,910 DEBUG Processing 779/862 atomic regions from SNP 233528 to 234128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,954 DEBUG Processing 736/910 atomic regions from SNP 220566 to 221166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,029 DEBUG Processing 605/1138 atomic regions from SNP 181270 to 181870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,062 DEBUG Processing 564/653 atomic regions from SNP 169084 to 169684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,086 DEBUG Processing 232/236 atomic regions from SNP 69576 to 70177 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,124 DEBUG Processing 656/1028 atomic regions from SNP 196576 to 197176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,153 DEBUG Processing 780/862 atomic regions from SNP 233828 to 234428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,195 DEBUG Processing 737/910 atomic regions from SNP 220866 to 221466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,279 DEBUG Processing 565/653 atomic regions from SNP 169384 to 169984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,297 DEBUG Processing 233/236 atomic regions from SNP 69877 to 70478 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,297 DEBUG Processing 606/1138 atomic regions from SNP 181570 to 182170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,365 DEBUG Processing 657/1028 atomic regions from SNP 196876 to 197476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,391 DEBUG Processing 781/862 atomic regions from SNP 234128 to 234728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,420 DEBUG Processing 738/910 atomic regions from SNP 221166 to 221766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,497 DEBUG Processing 566/653 atomic regions from SNP 169684 to 170284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,506 DEBUG Processing 234/236 atomic regions from SNP 70178 to 70779 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,548 DEBUG Processing 607/1138 atomic regions from SNP 181870 to 182470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,607 DEBUG Processing 658/1028 atomic regions from SNP 197176 to 197776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,637 DEBUG Processing 782/862 atomic regions from SNP 234428 to 235028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,643 DEBUG Processing 739/910 atomic regions from SNP 221466 to 222066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,712 DEBUG Processing 235/236 atomic regions from SNP 70479 to 71080 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,714 DEBUG Processing 567/653 atomic regions from SNP 169984 to 170584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,802 DEBUG Processing 608/1138 atomic regions from SNP 182170 to 182770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,848 DEBUG Processing 659/1028 atomic regions from SNP 197476 to 198076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,854 DEBUG Processing 783/862 atomic regions from SNP 234728 to 235328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,868 DEBUG Processing 740/910 atomic regions from SNP 221766 to 222366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,927 DEBUG Processing 236/236 atomic regions from SNP 70780 to 71381 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,929 DEBUG Processing 568/653 atomic regions from SNP 170284 to 170884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,037 DEBUG Unique SNPs positions in subchromosome 6: 71382 2025-01-31 09:46:14,066 DEBUG Processing 609/1138 atomic regions from SNP 182470 to 183070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,072 DEBUG Processing 784/862 atomic regions from SNP 235028 to 235628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,091 DEBUG Processing 660/1028 atomic regions from SNP 197776 to 198376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,123 DEBUG Processing 741/910 atomic regions from SNP 222066 to 222666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,149 DEBUG Subchromosome time: 58.534990679472685, subchromosome SNPs: 71382 2025-01-31 09:46:14,149 DEBUG Estimated BADs: [1.09, 5.46, 2.18, 1.09, 0.00, 0.00, 2.18, 0.55, 1.09, 10.92, 1.09, 3.28, 0.55, 1.09, 2.18, 0.55, 0.00, 0.55, 1.09, 2.18, 1.09, 2.18, 1.09, 10.92] SNP counts: [3926, 672, 10778, 17626, 1, 55, 5486, 15769, 3793, 156, 35675, 3990, 25827, 16343, 8116, 28398, 4, 13083, 24413, 2980, 11780, 8986, 10102, 38] SNP IDs counts: [3926, 672, 10778, 17626, 1, 55, 5486, 15769, 3793, 156, 35675, 3990, 25827, 16343, 8116, 28398, 4, 13083, 24413, 2980, 11780, 8986, 10102, 38] Critical gap: 747052bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.55Mbp, 7.90Mbp, 14.20Mbp, 26.91Mbp[1.81Mbp], 28.73Mbp[0.84Mbp], 29.68Mbp[1.45Mbp], 38.87Mbp, 48.26Mbp, 50.55Mbp, 50.64Mbp, 73.22Mbp, 75.78Mbp, 91.30Mbp, 101.25Mbp, 105.96Mbp, 124.25Mbp[0.87Mbp], 125.13Mbp[0.88Mbp], 133.86Mbp, 150.43Mbp, 152.15Mbp, 159.25Mbp, 164.24Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:46:14,149 DEBUG chrX time: 58.53559187054634 s 2025-01-31 09:46:14,166 DEBUG Processing 569/653 atomic regions from SNP 170584 to 171184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,291 DEBUG Processing 785/862 atomic regions from SNP 235328 to 235928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,311 DEBUG chrX: Fitting background model for 21 segments 2025-01-31 09:46:14,320 DEBUG Processing 610/1138 atomic regions from SNP 182770 to 183370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,337 DEBUG Processing 661/1028 atomic regions from SNP 198076 to 198676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,360 DEBUG Processing 742/910 atomic regions from SNP 222366 to 222966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,413 DEBUG Processing 570/653 atomic regions from SNP 170884 to 171484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,508 DEBUG Processing 786/862 atomic regions from SNP 235628 to 236228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,573 DEBUG Processing 611/1138 atomic regions from SNP 183070 to 183670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,583 DEBUG Processing 662/1028 atomic regions from SNP 198376 to 198976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,586 DEBUG Processing 743/910 atomic regions from SNP 222666 to 223266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,663 DEBUG Processing 571/653 atomic regions from SNP 171184 to 171784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,741 DEBUG Processing 787/862 atomic regions from SNP 235928 to 236528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,816 DEBUG Processing 744/910 atomic regions from SNP 222966 to 223566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,826 DEBUG Processing 612/1138 atomic regions from SNP 183370 to 183970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,827 DEBUG Processing 663/1028 atomic regions from SNP 198676 to 199276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,908 DEBUG Processing 572/653 atomic regions from SNP 171484 to 172084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,987 DEBUG Processing 788/862 atomic regions from SNP 236228 to 236828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,049 DEBUG Processing 745/910 atomic regions from SNP 223266 to 223866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,071 DEBUG Processing 664/1028 atomic regions from SNP 198976 to 199576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,079 DEBUG Processing 613/1138 atomic regions from SNP 183670 to 184270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,140 DEBUG Processing 573/653 atomic regions from SNP 171784 to 172384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,228 DEBUG Processing 789/862 atomic regions from SNP 236528 to 237128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,302 DEBUG Processing 746/910 atomic regions from SNP 223566 to 224166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,314 DEBUG Processing 665/1028 atomic regions from SNP 199276 to 199876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,331 DEBUG Processing 614/1138 atomic regions from SNP 183970 to 184570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,378 DEBUG Processing 574/653 atomic regions from SNP 172084 to 172684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,455 DEBUG Processing 790/862 atomic regions from SNP 236828 to 237428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,539 DEBUG Processing 747/910 atomic regions from SNP 223866 to 224466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,558 DEBUG Processing 666/1028 atomic regions from SNP 199576 to 200176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,582 DEBUG Processing 615/1138 atomic regions from SNP 184270 to 184870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,622 DEBUG Processing 575/653 atomic regions from SNP 172384 to 172984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,700 DEBUG Processing 791/862 atomic regions from SNP 237128 to 237728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,768 DEBUG Processing 748/910 atomic regions from SNP 224166 to 224766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,801 DEBUG Processing 667/1028 atomic regions from SNP 199876 to 200476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,832 DEBUG Processing 616/1138 atomic regions from SNP 184570 to 185170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,861 DEBUG Processing 576/653 atomic regions from SNP 172684 to 173284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,941 DEBUG Processing 792/862 atomic regions from SNP 237428 to 238028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,996 DEBUG Processing 749/910 atomic regions from SNP 224466 to 225066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,046 DEBUG Processing 668/1028 atomic regions from SNP 200176 to 200776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,088 DEBUG Processing 617/1138 atomic regions from SNP 184870 to 185470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,093 DEBUG Processing 577/653 atomic regions from SNP 172984 to 173584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,179 DEBUG Processing 793/862 atomic regions from SNP 237728 to 238328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,222 DEBUG Processing 750/910 atomic regions from SNP 224766 to 225366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,287 DEBUG Processing 669/1028 atomic regions from SNP 200476 to 201076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,312 DEBUG Processing 578/653 atomic regions from SNP 173284 to 173884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,341 DEBUG Processing 618/1138 atomic regions from SNP 185170 to 185770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,412 DEBUG Processing 794/862 atomic regions from SNP 238028 to 238628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,448 DEBUG Processing 751/910 atomic regions from SNP 225066 to 225666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,529 DEBUG Processing 579/653 atomic regions from SNP 173584 to 174184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,529 DEBUG Processing 670/1028 atomic regions from SNP 200776 to 201376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,594 DEBUG Processing 619/1138 atomic regions from SNP 185470 to 186070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,661 DEBUG Processing 795/862 atomic regions from SNP 238328 to 238928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,672 DEBUG Processing 752/910 atomic regions from SNP 225366 to 225966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,746 DEBUG Processing 580/653 atomic regions from SNP 173884 to 174484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,768 DEBUG Processing 671/1028 atomic regions from SNP 201076 to 201676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,849 DEBUG Processing 620/1138 atomic regions from SNP 185770 to 186370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,898 DEBUG Processing 753/910 atomic regions from SNP 225666 to 226266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,914 DEBUG Processing 796/862 atomic regions from SNP 238628 to 239228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,963 DEBUG Processing 581/653 atomic regions from SNP 174184 to 174784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,006 DEBUG Processing 672/1028 atomic regions from SNP 201376 to 201976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,102 DEBUG Processing 621/1138 atomic regions from SNP 186070 to 186670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,125 DEBUG Processing 754/910 atomic regions from SNP 225966 to 226566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,166 DEBUG Processing 797/862 atomic regions from SNP 238928 to 239528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,179 DEBUG Processing 582/653 atomic regions from SNP 174484 to 175084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,243 DEBUG Processing 673/1028 atomic regions from SNP 201676 to 202276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,354 DEBUG Processing 622/1138 atomic regions from SNP 186370 to 186970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,355 DEBUG Processing 755/910 atomic regions from SNP 226266 to 226866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,397 DEBUG Processing 583/653 atomic regions from SNP 174784 to 175384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,398 DEBUG Processing 798/862 atomic regions from SNP 239228 to 239828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,480 DEBUG Processing 674/1028 atomic regions from SNP 201976 to 202576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,594 DEBUG Processing 756/910 atomic regions from SNP 226566 to 227166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,611 DEBUG Processing 623/1138 atomic regions from SNP 186670 to 187270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,617 DEBUG Processing 584/653 atomic regions from SNP 175084 to 175684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,628 DEBUG Processing 799/862 atomic regions from SNP 239528 to 240128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,717 DEBUG Processing 675/1028 atomic regions from SNP 202276 to 202876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,826 DEBUG Processing 757/910 atomic regions from SNP 226866 to 227466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,832 DEBUG Processing 585/653 atomic regions from SNP 175384 to 175984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,854 DEBUG Processing 800/862 atomic regions from SNP 239828 to 240428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,866 DEBUG Processing 624/1138 atomic regions from SNP 186970 to 187570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,953 DEBUG Processing 676/1028 atomic regions from SNP 202576 to 203176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,045 DEBUG Processing 586/653 atomic regions from SNP 175684 to 176284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,054 DEBUG Processing 758/910 atomic regions from SNP 227166 to 227766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,086 DEBUG Processing 801/862 atomic regions from SNP 240128 to 240728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,120 DEBUG Processing 625/1138 atomic regions from SNP 187270 to 187870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,192 DEBUG Processing 677/1028 atomic regions from SNP 202876 to 203476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,256 DEBUG Processing 587/653 atomic regions from SNP 175984 to 176584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,280 DEBUG Processing 759/910 atomic regions from SNP 227466 to 228066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,313 DEBUG Processing 802/862 atomic regions from SNP 240428 to 241028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,375 DEBUG Processing 626/1138 atomic regions from SNP 187570 to 188170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,433 DEBUG Processing 678/1028 atomic regions from SNP 203176 to 203776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,469 DEBUG Processing 588/653 atomic regions from SNP 176284 to 176884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,506 DEBUG Processing 760/910 atomic regions from SNP 227766 to 228366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,530 DEBUG Processing 803/862 atomic regions from SNP 240728 to 241328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,629 DEBUG Processing 627/1138 atomic regions from SNP 187870 to 188470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,673 DEBUG Processing 679/1028 atomic regions from SNP 203476 to 204076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,681 DEBUG Processing 589/653 atomic regions from SNP 176584 to 177184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,730 DEBUG Processing 761/910 atomic regions from SNP 228066 to 228666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,745 DEBUG Processing 804/862 atomic regions from SNP 241028 to 241628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,882 DEBUG Processing 628/1138 atomic regions from SNP 188170 to 188770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,893 DEBUG Processing 590/653 atomic regions from SNP 176884 to 177484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,915 DEBUG Processing 680/1028 atomic regions from SNP 203776 to 204376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,955 DEBUG Processing 762/910 atomic regions from SNP 228366 to 228966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,961 DEBUG Processing 805/862 atomic regions from SNP 241328 to 241928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,107 DEBUG Processing 591/653 atomic regions from SNP 177184 to 177784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,138 DEBUG Processing 629/1138 atomic regions from SNP 188470 to 189070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,156 DEBUG Processing 681/1028 atomic regions from SNP 204076 to 204676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,177 DEBUG Processing 806/862 atomic regions from SNP 241628 to 242228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,180 DEBUG Processing 763/910 atomic regions from SNP 228666 to 229266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,327 DEBUG Processing 592/653 atomic regions from SNP 177484 to 178084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,394 DEBUG Processing 630/1138 atomic regions from SNP 188770 to 189370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,400 DEBUG Processing 682/1028 atomic regions from SNP 204376 to 204976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,404 DEBUG Processing 807/862 atomic regions from SNP 241928 to 242528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,407 DEBUG Processing 764/910 atomic regions from SNP 228966 to 229566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,542 DEBUG Processing 593/653 atomic regions from SNP 177784 to 178384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,635 DEBUG Processing 765/910 atomic regions from SNP 229266 to 229866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,643 DEBUG Processing 683/1028 atomic regions from SNP 204676 to 205276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,647 DEBUG Processing 631/1138 atomic regions from SNP 189070 to 189670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,652 DEBUG Processing 808/862 atomic regions from SNP 242228 to 242828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,774 DEBUG Processing 594/653 atomic regions from SNP 178084 to 178684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,864 DEBUG Processing 766/910 atomic regions from SNP 229566 to 230166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,896 DEBUG Processing 684/1028 atomic regions from SNP 204976 to 205576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,898 DEBUG Processing 809/862 atomic regions from SNP 242528 to 243128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,903 DEBUG Processing 632/1138 atomic regions from SNP 189370 to 189970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,994 DEBUG Processing 595/653 atomic regions from SNP 178384 to 178984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,099 DEBUG Processing 767/910 atomic regions from SNP 229866 to 230466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,147 DEBUG Processing 810/862 atomic regions from SNP 242828 to 243428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,157 DEBUG Processing 633/1138 atomic regions from SNP 189670 to 190270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,160 DEBUG Processing 685/1028 atomic regions from SNP 205276 to 205876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,216 DEBUG Processing 596/653 atomic regions from SNP 178684 to 179284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,355 DEBUG Processing 768/910 atomic regions from SNP 230166 to 230766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,400 DEBUG Processing 811/862 atomic regions from SNP 243128 to 243728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,411 DEBUG Processing 634/1138 atomic regions from SNP 189970 to 190570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,434 DEBUG Processing 686/1028 atomic regions from SNP 205576 to 206176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,437 DEBUG Processing 597/653 atomic regions from SNP 178984 to 179584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,612 DEBUG Processing 769/910 atomic regions from SNP 230466 to 231066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,640 DEBUG Processing 812/862 atomic regions from SNP 243428 to 244028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,657 DEBUG Processing 598/653 atomic regions from SNP 179284 to 179884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,665 DEBUG Processing 635/1138 atomic regions from SNP 190270 to 190870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,712 DEBUG Processing 687/1028 atomic regions from SNP 205876 to 206476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,854 DEBUG Processing 770/910 atomic regions from SNP 230766 to 231366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,877 DEBUG Processing 599/653 atomic regions from SNP 179584 to 180184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,882 DEBUG Processing 813/862 atomic regions from SNP 243728 to 244328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,922 DEBUG Processing 636/1138 atomic regions from SNP 190570 to 191170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,983 DEBUG Processing 688/1028 atomic regions from SNP 206176 to 206776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,097 DEBUG Processing 600/653 atomic regions from SNP 179884 to 180484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,102 DEBUG Processing 771/910 atomic regions from SNP 231066 to 231666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,130 DEBUG Processing 814/862 atomic regions from SNP 244028 to 244628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,175 DEBUG Processing 637/1138 atomic regions from SNP 190870 to 191470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,253 DEBUG Processing 689/1028 atomic regions from SNP 206476 to 207076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,320 DEBUG Processing 601/653 atomic regions from SNP 180184 to 180784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,336 DEBUG Processing 772/910 atomic regions from SNP 231366 to 231966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,379 DEBUG Processing 815/862 atomic regions from SNP 244328 to 244928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,425 DEBUG Processing 638/1138 atomic regions from SNP 191170 to 191770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,514 DEBUG Processing 690/1028 atomic regions from SNP 206776 to 207376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,561 DEBUG Processing 602/653 atomic regions from SNP 180484 to 181084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,561 DEBUG Processing 773/910 atomic regions from SNP 231666 to 232266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,629 DEBUG Processing 816/862 atomic regions from SNP 244628 to 245228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,679 DEBUG Processing 639/1138 atomic regions from SNP 191470 to 192070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,772 DEBUG Processing 691/1028 atomic regions from SNP 207076 to 207676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,786 DEBUG Processing 774/910 atomic regions from SNP 231966 to 232566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,811 DEBUG Processing 603/653 atomic regions from SNP 180784 to 181384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,870 DEBUG Processing 817/862 atomic regions from SNP 244928 to 245528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,930 DEBUG Processing 640/1138 atomic regions from SNP 191770 to 192370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,013 DEBUG Processing 775/910 atomic regions from SNP 232266 to 232866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,032 DEBUG Processing 692/1028 atomic regions from SNP 207376 to 207976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,043 DEBUG Processing 604/653 atomic regions from SNP 181084 to 181684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,106 DEBUG Processing 818/862 atomic regions from SNP 245228 to 245828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,180 DEBUG Processing 641/1138 atomic regions from SNP 192070 to 192670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,238 DEBUG Processing 776/910 atomic regions from SNP 232566 to 233166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,279 DEBUG Processing 605/653 atomic regions from SNP 181384 to 181984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,283 DEBUG Processing 693/1028 atomic regions from SNP 207676 to 208276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,352 DEBUG Processing 819/862 atomic regions from SNP 245528 to 246128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,429 DEBUG Processing 642/1138 atomic regions from SNP 192370 to 192970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,467 DEBUG Processing 777/910 atomic regions from SNP 232866 to 233466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,517 DEBUG Processing 606/653 atomic regions from SNP 181684 to 182284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,545 DEBUG Processing 694/1028 atomic regions from SNP 207976 to 208576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,581 DEBUG Processing 820/862 atomic regions from SNP 245828 to 246428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,680 DEBUG Processing 643/1138 atomic regions from SNP 192670 to 193270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,692 DEBUG Processing 778/910 atomic regions from SNP 233166 to 233766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,760 DEBUG Processing 607/653 atomic regions from SNP 181984 to 182584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,796 DEBUG Processing 821/862 atomic regions from SNP 246128 to 246728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,810 DEBUG Processing 695/1028 atomic regions from SNP 208276 to 208876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,918 DEBUG Processing 779/910 atomic regions from SNP 233466 to 234066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,934 DEBUG Processing 644/1138 atomic regions from SNP 192970 to 193570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,003 DEBUG Processing 608/653 atomic regions from SNP 182284 to 182884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,017 DEBUG Processing 822/862 atomic regions from SNP 246428 to 247028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,059 DEBUG Processing 696/1028 atomic regions from SNP 208576 to 209176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,144 DEBUG Processing 780/910 atomic regions from SNP 233766 to 234366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,188 DEBUG Processing 645/1138 atomic regions from SNP 193270 to 193870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,240 DEBUG Processing 609/653 atomic regions from SNP 182584 to 183184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,249 DEBUG Processing 823/862 atomic regions from SNP 246728 to 247328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,310 DEBUG Processing 697/1028 atomic regions from SNP 208876 to 209476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,370 DEBUG Processing 781/910 atomic regions from SNP 234066 to 234666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,439 DEBUG Processing 646/1138 atomic regions from SNP 193570 to 194170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,475 DEBUG Processing 610/653 atomic regions from SNP 182884 to 183484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,491 DEBUG Processing 824/862 atomic regions from SNP 247028 to 247628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,568 DEBUG Processing 698/1028 atomic regions from SNP 209176 to 209776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,594 DEBUG Processing 782/910 atomic regions from SNP 234366 to 234966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,692 DEBUG Processing 647/1138 atomic regions from SNP 193870 to 194470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,706 DEBUG Processing 611/653 atomic regions from SNP 183184 to 183784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,739 DEBUG Processing 825/862 atomic regions from SNP 247328 to 247928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,811 DEBUG Processing 699/1028 atomic regions from SNP 209476 to 210076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,817 DEBUG Processing 783/910 atomic regions from SNP 234666 to 235266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,940 DEBUG Processing 612/653 atomic regions from SNP 183484 to 184084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,942 DEBUG Processing 648/1138 atomic regions from SNP 194170 to 194770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,957 DEBUG Processing 826/862 atomic regions from SNP 247628 to 248228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,042 DEBUG Processing 784/910 atomic regions from SNP 234966 to 235566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,057 DEBUG Processing 700/1028 atomic regions from SNP 209776 to 210376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,173 DEBUG Processing 613/653 atomic regions from SNP 183784 to 184384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,175 DEBUG Processing 827/862 atomic regions from SNP 247928 to 248528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,192 DEBUG Processing 649/1138 atomic regions from SNP 194470 to 195070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,266 DEBUG Processing 785/910 atomic regions from SNP 235266 to 235866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,307 DEBUG Processing 701/1028 atomic regions from SNP 210076 to 210676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,393 DEBUG Processing 828/862 atomic regions from SNP 248228 to 248828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,400 DEBUG Processing 614/653 atomic regions from SNP 184084 to 184684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,445 DEBUG Processing 650/1138 atomic regions from SNP 194770 to 195370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,490 DEBUG Processing 786/910 atomic regions from SNP 235566 to 236166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,557 DEBUG Processing 702/1028 atomic regions from SNP 210376 to 210976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,612 DEBUG Processing 829/862 atomic regions from SNP 248528 to 249128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,632 DEBUG Processing 615/653 atomic regions from SNP 184384 to 184984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,697 DEBUG Processing 651/1138 atomic regions from SNP 195070 to 195670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,714 DEBUG Processing 787/910 atomic regions from SNP 235866 to 236466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,824 DEBUG Processing 703/1028 atomic regions from SNP 210676 to 211276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,854 DEBUG Processing 830/862 atomic regions from SNP 248828 to 249428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,879 DEBUG Processing 616/653 atomic regions from SNP 184684 to 185284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,937 DEBUG Processing 788/910 atomic regions from SNP 236166 to 236766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,950 DEBUG Processing 652/1138 atomic regions from SNP 195370 to 195970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,069 DEBUG Processing 704/1028 atomic regions from SNP 210976 to 211576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,077 DEBUG Processing 831/862 atomic regions from SNP 249128 to 249728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,128 DEBUG Processing 617/653 atomic regions from SNP 184984 to 185584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,162 DEBUG Processing 789/910 atomic regions from SNP 236466 to 237066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,200 DEBUG Processing 653/1138 atomic regions from SNP 195670 to 196270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,301 DEBUG Processing 832/862 atomic regions from SNP 249428 to 250028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,312 DEBUG Processing 705/1028 atomic regions from SNP 211276 to 211876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,369 DEBUG Processing 618/653 atomic regions from SNP 185284 to 185884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,388 DEBUG Processing 790/910 atomic regions from SNP 236766 to 237366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,450 DEBUG Processing 654/1138 atomic regions from SNP 195970 to 196570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,540 DEBUG Processing 833/862 atomic regions from SNP 249728 to 250328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,554 DEBUG Processing 706/1028 atomic regions from SNP 211576 to 212176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,611 DEBUG Processing 619/653 atomic regions from SNP 185584 to 186184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,616 DEBUG Processing 791/910 atomic regions from SNP 237066 to 237666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,699 DEBUG Processing 655/1138 atomic regions from SNP 196270 to 196870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,787 DEBUG Processing 834/862 atomic regions from SNP 250028 to 250628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,811 DEBUG Processing 707/1028 atomic regions from SNP 211876 to 212476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,837 DEBUG Processing 620/653 atomic regions from SNP 185884 to 186484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,843 DEBUG Processing 792/910 atomic regions from SNP 237366 to 237966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,951 DEBUG Processing 656/1138 atomic regions from SNP 196570 to 197170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,022 DEBUG Processing 835/862 atomic regions from SNP 250328 to 250928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,068 DEBUG Processing 621/653 atomic regions from SNP 186184 to 186784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,071 DEBUG Processing 793/910 atomic regions from SNP 237666 to 238266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,075 DEBUG Processing 708/1028 atomic regions from SNP 212176 to 212776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,205 DEBUG Processing 657/1138 atomic regions from SNP 196870 to 197470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,240 DEBUG Processing 836/862 atomic regions from SNP 250628 to 251228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,298 DEBUG Processing 794/910 atomic regions from SNP 237966 to 238566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,308 DEBUG Processing 622/653 atomic regions from SNP 186484 to 187084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,338 DEBUG Processing 709/1028 atomic regions from SNP 212476 to 213076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,457 DEBUG Processing 658/1138 atomic regions from SNP 197170 to 197770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,466 DEBUG Processing 837/862 atomic regions from SNP 250928 to 251528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,526 DEBUG Processing 795/910 atomic regions from SNP 238266 to 238866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,528 DEBUG Processing 623/653 atomic regions from SNP 186784 to 187384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,581 DEBUG Processing 710/1028 atomic regions from SNP 212776 to 213376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,686 DEBUG Processing 838/862 atomic regions from SNP 251228 to 251828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,708 DEBUG Processing 659/1138 atomic regions from SNP 197470 to 198070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,747 DEBUG Processing 624/653 atomic regions from SNP 187084 to 187684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,753 DEBUG Processing 796/910 atomic regions from SNP 238566 to 239166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,821 DEBUG Processing 711/1028 atomic regions from SNP 213076 to 213676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,908 DEBUG Processing 839/862 atomic regions from SNP 251528 to 252128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,961 DEBUG Processing 660/1138 atomic regions from SNP 197770 to 198370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,963 DEBUG Processing 625/653 atomic regions from SNP 187384 to 187984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,979 DEBUG Processing 797/910 atomic regions from SNP 238866 to 239466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,061 DEBUG Processing 712/1028 atomic regions from SNP 213376 to 213976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,142 DEBUG Processing 840/862 atomic regions from SNP 251828 to 252428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,183 DEBUG Processing 626/653 atomic regions from SNP 187684 to 188284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,207 DEBUG Processing 798/910 atomic regions from SNP 239166 to 239766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,213 DEBUG Processing 661/1138 atomic regions from SNP 198070 to 198670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,301 DEBUG Processing 713/1028 atomic regions from SNP 213676 to 214276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,362 DEBUG Processing 841/862 atomic regions from SNP 252128 to 252728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,427 DEBUG Processing 627/653 atomic regions from SNP 187984 to 188584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,434 DEBUG Processing 799/910 atomic regions from SNP 239466 to 240066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,466 DEBUG Processing 662/1138 atomic regions from SNP 198370 to 198970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,541 DEBUG Processing 714/1028 atomic regions from SNP 213976 to 214576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,578 DEBUG Processing 842/862 atomic regions from SNP 252428 to 253028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,660 DEBUG Processing 800/910 atomic regions from SNP 239766 to 240366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,677 DEBUG Processing 628/653 atomic regions from SNP 188284 to 188884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,717 DEBUG Processing 663/1138 atomic regions from SNP 198670 to 199270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,782 DEBUG Processing 715/1028 atomic regions from SNP 214276 to 214876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,810 DEBUG Processing 843/862 atomic regions from SNP 252728 to 253328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,886 DEBUG Processing 801/910 atomic regions from SNP 240066 to 240666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,920 DEBUG Processing 629/653 atomic regions from SNP 188584 to 189184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,968 DEBUG Processing 664/1138 atomic regions from SNP 198970 to 199570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,028 DEBUG Processing 716/1028 atomic regions from SNP 214576 to 215176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,048 DEBUG Processing 844/862 atomic regions from SNP 253028 to 253628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,114 DEBUG Processing 802/910 atomic regions from SNP 240366 to 240966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,159 DEBUG Processing 630/653 atomic regions from SNP 188884 to 189484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,219 DEBUG Processing 665/1138 atomic regions from SNP 199270 to 199870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,271 DEBUG Processing 845/862 atomic regions from SNP 253328 to 253928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,271 DEBUG Processing 717/1028 atomic regions from SNP 214876 to 215476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,340 DEBUG Processing 803/910 atomic regions from SNP 240666 to 241266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,377 DEBUG Processing 631/653 atomic regions from SNP 189184 to 189784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,474 DEBUG Processing 666/1138 atomic regions from SNP 199570 to 200170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,505 DEBUG Processing 846/862 atomic regions from SNP 253628 to 254228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,513 DEBUG Processing 718/1028 atomic regions from SNP 215176 to 215776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,563 DEBUG Processing 804/910 atomic regions from SNP 240966 to 241566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,596 DEBUG Processing 632/653 atomic regions from SNP 189484 to 190084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,728 DEBUG Processing 667/1138 atomic regions from SNP 199870 to 200470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,754 DEBUG Processing 719/1028 atomic regions from SNP 215476 to 216076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,754 DEBUG Processing 847/862 atomic regions from SNP 253928 to 254528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,789 DEBUG Processing 805/910 atomic regions from SNP 241266 to 241866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,816 DEBUG Processing 633/653 atomic regions from SNP 189784 to 190384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,982 DEBUG Processing 668/1138 atomic regions from SNP 200170 to 200770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,999 DEBUG Processing 720/1028 atomic regions from SNP 215776 to 216376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,008 DEBUG Processing 848/862 atomic regions from SNP 254228 to 254828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,015 DEBUG Processing 806/910 atomic regions from SNP 241566 to 242166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,040 DEBUG Processing 634/653 atomic regions from SNP 190084 to 190684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,236 DEBUG Processing 669/1138 atomic regions from SNP 200470 to 201070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,242 DEBUG Processing 807/910 atomic regions from SNP 241866 to 242466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,242 DEBUG Processing 721/1028 atomic regions from SNP 216076 to 216676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,255 DEBUG Processing 849/862 atomic regions from SNP 254528 to 255128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,262 DEBUG Processing 635/653 atomic regions from SNP 190384 to 190984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,468 DEBUG Processing 808/910 atomic regions from SNP 242166 to 242766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,481 DEBUG Processing 636/653 atomic regions from SNP 190684 to 191284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,485 DEBUG Processing 722/1028 atomic regions from SNP 216376 to 216976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,488 DEBUG Processing 670/1138 atomic regions from SNP 200770 to 201370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,488 DEBUG Processing 850/862 atomic regions from SNP 254828 to 255428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,694 DEBUG Processing 809/910 atomic regions from SNP 242466 to 243066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,701 DEBUG Processing 637/653 atomic regions from SNP 190984 to 191584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,730 DEBUG Processing 723/1028 atomic regions from SNP 216676 to 217276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,734 DEBUG Processing 851/862 atomic regions from SNP 255128 to 255728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,740 DEBUG Processing 671/1138 atomic regions from SNP 201070 to 201670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,916 DEBUG Processing 638/653 atomic regions from SNP 191284 to 191884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,918 DEBUG Processing 810/910 atomic regions from SNP 242766 to 243366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,974 DEBUG Processing 724/1028 atomic regions from SNP 216976 to 217576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,976 DEBUG Processing 852/862 atomic regions from SNP 255428 to 256028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,994 DEBUG Processing 672/1138 atomic regions from SNP 201370 to 201970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,133 DEBUG Processing 639/653 atomic regions from SNP 191584 to 192184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,142 DEBUG Processing 811/910 atomic regions from SNP 243066 to 243666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,197 DEBUG Processing 853/862 atomic regions from SNP 255728 to 256328 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,218 DEBUG Processing 725/1028 atomic regions from SNP 217276 to 217876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,246 DEBUG Processing 673/1138 atomic regions from SNP 201670 to 202270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,367 DEBUG Processing 812/910 atomic regions from SNP 243366 to 243966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,374 DEBUG Processing 640/653 atomic regions from SNP 191884 to 192484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,421 DEBUG Processing 854/862 atomic regions from SNP 256028 to 256628 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,460 DEBUG Processing 726/1028 atomic regions from SNP 217576 to 218176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,524 DEBUG Processing 674/1138 atomic regions from SNP 201970 to 202570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,593 DEBUG Processing 813/910 atomic regions from SNP 243666 to 244266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,623 DEBUG Processing 641/653 atomic regions from SNP 192184 to 192784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,661 DEBUG Processing 855/862 atomic regions from SNP 256328 to 256928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,697 DEBUG Processing 727/1028 atomic regions from SNP 217876 to 218476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,801 DEBUG Processing 675/1138 atomic regions from SNP 202270 to 202870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,818 DEBUG Processing 814/910 atomic regions from SNP 243966 to 244566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,862 DEBUG Processing 642/653 atomic regions from SNP 192484 to 193084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,901 DEBUG Processing 856/862 atomic regions from SNP 256628 to 257228 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,953 DEBUG Processing 728/1028 atomic regions from SNP 218176 to 218776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,045 DEBUG Processing 815/910 atomic regions from SNP 244266 to 244866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,057 DEBUG Processing 676/1138 atomic regions from SNP 202570 to 203170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,087 DEBUG Processing 643/653 atomic regions from SNP 192784 to 193384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,140 DEBUG Processing 857/862 atomic regions from SNP 256928 to 257528 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,209 DEBUG Processing 729/1028 atomic regions from SNP 218476 to 219076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,272 DEBUG Processing 816/910 atomic regions from SNP 244566 to 245166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,314 DEBUG Processing 677/1138 atomic regions from SNP 202870 to 203470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,320 DEBUG Processing 644/653 atomic regions from SNP 193084 to 193684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,378 DEBUG Processing 858/862 atomic regions from SNP 257228 to 257828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,454 DEBUG Processing 730/1028 atomic regions from SNP 218776 to 219376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,502 DEBUG Processing 817/910 atomic regions from SNP 244866 to 245466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,549 DEBUG Processing 645/653 atomic regions from SNP 193384 to 193984 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,566 DEBUG Processing 678/1138 atomic regions from SNP 203170 to 203770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,595 DEBUG Processing 859/862 atomic regions from SNP 257528 to 258128 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,694 DEBUG Processing 731/1028 atomic regions from SNP 219076 to 219676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,729 DEBUG Processing 818/910 atomic regions from SNP 245166 to 245766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,802 DEBUG Processing 646/653 atomic regions from SNP 193684 to 194284 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,822 DEBUG Processing 860/862 atomic regions from SNP 257828 to 258428 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,825 DEBUG Processing 679/1138 atomic regions from SNP 203470 to 204070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,935 DEBUG Processing 732/1028 atomic regions from SNP 219376 to 219976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,956 DEBUG Processing 819/910 atomic regions from SNP 245466 to 246066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,053 DEBUG Processing 647/653 atomic regions from SNP 193984 to 194584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,055 DEBUG Processing 861/862 atomic regions from SNP 258128 to 258728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,086 DEBUG Processing 680/1138 atomic regions from SNP 203770 to 204370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,175 DEBUG Processing 733/1028 atomic regions from SNP 219676 to 220276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,178 DEBUG Processing 820/910 atomic regions from SNP 245766 to 246366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,288 DEBUG Processing 648/653 atomic regions from SNP 194284 to 194884 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,295 DEBUG Processing 862/862 atomic regions from SNP 258428 to 259028 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,362 DEBUG Processing 681/1138 atomic regions from SNP 204070 to 204670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,404 DEBUG Processing 821/910 atomic regions from SNP 246066 to 246666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,420 DEBUG Processing 734/1028 atomic regions from SNP 219976 to 220576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,424 DEBUG Unique SNPs positions in subchromosome 1: 259029 2025-01-31 09:46:32,515 DEBUG Processing 649/653 atomic regions from SNP 194584 to 195184 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,630 DEBUG Processing 682/1138 atomic regions from SNP 204370 to 204970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,631 DEBUG Processing 822/910 atomic regions from SNP 246366 to 246966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,664 DEBUG Processing 735/1028 atomic regions from SNP 220276 to 220876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,748 DEBUG Processing 650/653 atomic regions from SNP 194884 to 195484 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,856 DEBUG Processing 823/910 atomic regions from SNP 246666 to 247266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,885 DEBUG Processing 683/1138 atomic regions from SNP 204670 to 205270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,916 DEBUG Processing 736/1028 atomic regions from SNP 220576 to 221176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,993 DEBUG Processing 651/653 atomic regions from SNP 195184 to 195784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,081 DEBUG Processing 824/910 atomic regions from SNP 246966 to 247566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,156 DEBUG Processing 684/1138 atomic regions from SNP 204970 to 205570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,170 DEBUG Processing 737/1028 atomic regions from SNP 220876 to 221476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,240 DEBUG Processing 652/653 atomic regions from SNP 195484 to 196084 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,304 DEBUG Processing 825/910 atomic regions from SNP 247266 to 247866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,431 DEBUG Processing 685/1138 atomic regions from SNP 205270 to 205870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,437 DEBUG Processing 738/1028 atomic regions from SNP 221176 to 221776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,485 DEBUG Processing 653/653 atomic regions from SNP 195784 to 196384 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,524 DEBUG Processing 826/910 atomic regions from SNP 247566 to 248166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,617 DEBUG Unique SNPs positions in subchromosome 2: 196385 2025-01-31 09:46:33,702 DEBUG Processing 739/1028 atomic regions from SNP 221476 to 222076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,708 DEBUG Processing 686/1138 atomic regions from SNP 205570 to 206170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,749 DEBUG Processing 827/910 atomic regions from SNP 247866 to 248466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,966 DEBUG Processing 687/1138 atomic regions from SNP 205870 to 206470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,970 DEBUG Processing 740/1028 atomic regions from SNP 221776 to 222376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,970 DEBUG Processing 828/910 atomic regions from SNP 248166 to 248766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,196 DEBUG Processing 829/910 atomic regions from SNP 248466 to 249066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,216 DEBUG Processing 741/1028 atomic regions from SNP 222076 to 222676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,218 DEBUG Processing 688/1138 atomic regions from SNP 206170 to 206770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,421 DEBUG Processing 830/910 atomic regions from SNP 248766 to 249366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,460 DEBUG Processing 742/1028 atomic regions from SNP 222376 to 222976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,469 DEBUG Processing 689/1138 atomic regions from SNP 206470 to 207070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,643 DEBUG Processing 831/910 atomic regions from SNP 249066 to 249666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,713 DEBUG Processing 743/1028 atomic regions from SNP 222676 to 223276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,719 DEBUG Processing 690/1138 atomic regions from SNP 206770 to 207370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,864 DEBUG Processing 832/910 atomic regions from SNP 249366 to 249966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,960 DEBUG Processing 744/1028 atomic regions from SNP 222976 to 223576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,971 DEBUG Processing 691/1138 atomic regions from SNP 207070 to 207670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,089 DEBUG Processing 833/910 atomic regions from SNP 249666 to 250266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,202 DEBUG Processing 745/1028 atomic regions from SNP 223276 to 223876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,222 DEBUG Processing 692/1138 atomic regions from SNP 207370 to 207970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,311 DEBUG Processing 834/910 atomic regions from SNP 249966 to 250566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,445 DEBUG Processing 746/1028 atomic regions from SNP 223576 to 224176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,479 DEBUG Processing 693/1138 atomic regions from SNP 207670 to 208270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,540 DEBUG Processing 835/910 atomic regions from SNP 250266 to 250866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,693 DEBUG Processing 747/1028 atomic regions from SNP 223876 to 224476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,747 DEBUG Processing 694/1138 atomic regions from SNP 207970 to 208570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,773 DEBUG Processing 836/910 atomic regions from SNP 250566 to 251166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,948 DEBUG Processing 748/1028 atomic regions from SNP 224176 to 224776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,994 DEBUG Processing 695/1138 atomic regions from SNP 208270 to 208870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,000 DEBUG Processing 837/910 atomic regions from SNP 250866 to 251466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,212 DEBUG Processing 749/1028 atomic regions from SNP 224476 to 225076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,233 DEBUG Processing 838/910 atomic regions from SNP 251166 to 251766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,255 DEBUG Processing 696/1138 atomic regions from SNP 208570 to 209170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,462 DEBUG Processing 839/910 atomic regions from SNP 251466 to 252066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,478 DEBUG Processing 750/1028 atomic regions from SNP 224776 to 225376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,506 DEBUG Processing 697/1138 atomic regions from SNP 208870 to 209470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,689 DEBUG Processing 840/910 atomic regions from SNP 251766 to 252366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,737 DEBUG Processing 751/1028 atomic regions from SNP 225076 to 225676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,756 DEBUG Processing 698/1138 atomic regions from SNP 209170 to 209770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,916 DEBUG Processing 841/910 atomic regions from SNP 252066 to 252666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,980 DEBUG Processing 752/1028 atomic regions from SNP 225376 to 225976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,005 DEBUG Processing 699/1138 atomic regions from SNP 209470 to 210070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,141 DEBUG Processing 842/910 atomic regions from SNP 252366 to 252966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,222 DEBUG Processing 753/1028 atomic regions from SNP 225676 to 226276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,253 DEBUG Processing 700/1138 atomic regions from SNP 209770 to 210370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,367 DEBUG Processing 843/910 atomic regions from SNP 252666 to 253266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,462 DEBUG Processing 754/1028 atomic regions from SNP 225976 to 226576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,501 DEBUG Processing 701/1138 atomic regions from SNP 210070 to 210670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,593 DEBUG Processing 844/910 atomic regions from SNP 252966 to 253566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,704 DEBUG Processing 755/1028 atomic regions from SNP 226276 to 226876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,748 DEBUG Processing 702/1138 atomic regions from SNP 210370 to 210970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,815 DEBUG Processing 845/910 atomic regions from SNP 253266 to 253866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,956 DEBUG Processing 756/1028 atomic regions from SNP 226576 to 227176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,999 DEBUG Processing 703/1138 atomic regions from SNP 210670 to 211270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,041 DEBUG Processing 846/910 atomic regions from SNP 253566 to 254166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,230 DEBUG Processing 757/1028 atomic regions from SNP 226876 to 227476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,251 DEBUG Processing 704/1138 atomic regions from SNP 210970 to 211570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,267 DEBUG Processing 847/910 atomic regions from SNP 253866 to 254466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,494 DEBUG Processing 848/910 atomic regions from SNP 254166 to 254766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,495 DEBUG Processing 758/1028 atomic regions from SNP 227176 to 227776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,503 DEBUG Processing 705/1138 atomic regions from SNP 211270 to 211870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,604 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:46:38,721 DEBUG Processing 849/910 atomic regions from SNP 254466 to 255066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,754 DEBUG Processing 706/1138 atomic regions from SNP 211570 to 212170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,760 DEBUG Processing 759/1028 atomic regions from SNP 227476 to 228076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,948 DEBUG Processing 850/910 atomic regions from SNP 254766 to 255366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,004 DEBUG Processing 707/1138 atomic regions from SNP 211870 to 212470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,008 DEBUG Processing 760/1028 atomic regions from SNP 227776 to 228376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,178 DEBUG Processing 851/910 atomic regions from SNP 255066 to 255666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,255 DEBUG Processing 708/1138 atomic regions from SNP 212170 to 212770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,267 DEBUG Processing 761/1028 atomic regions from SNP 228076 to 228676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,400 DEBUG Processing 852/910 atomic regions from SNP 255366 to 255966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,503 DEBUG Processing 709/1138 atomic regions from SNP 212470 to 213070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,541 DEBUG Processing 762/1028 atomic regions from SNP 228376 to 228976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,624 DEBUG Processing 853/910 atomic regions from SNP 255666 to 256266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,751 DEBUG Processing 710/1138 atomic regions from SNP 212770 to 213370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,812 DEBUG Processing 763/1028 atomic regions from SNP 228676 to 229276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,848 DEBUG Processing 854/910 atomic regions from SNP 255966 to 256566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,006 DEBUG Processing 711/1138 atomic regions from SNP 213070 to 213670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,069 DEBUG Processing 764/1028 atomic regions from SNP 228976 to 229576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,072 DEBUG Processing 855/910 atomic regions from SNP 256266 to 256866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,253 DEBUG Processing 712/1138 atomic regions from SNP 213370 to 213970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,297 DEBUG Processing 856/910 atomic regions from SNP 256566 to 257166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,319 DEBUG Processing 765/1028 atomic regions from SNP 229276 to 229876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,504 DEBUG Processing 713/1138 atomic regions from SNP 213670 to 214270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,522 DEBUG Processing 857/910 atomic regions from SNP 256866 to 257466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,559 DEBUG Processing 766/1028 atomic regions from SNP 229576 to 230176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,748 DEBUG Processing 858/910 atomic regions from SNP 257166 to 257766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,754 DEBUG Processing 714/1138 atomic regions from SNP 213970 to 214570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,811 DEBUG Processing 767/1028 atomic regions from SNP 229876 to 230476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,972 DEBUG Processing 859/910 atomic regions from SNP 257466 to 258066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,004 DEBUG Processing 715/1138 atomic regions from SNP 214270 to 214870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,061 DEBUG Processing 768/1028 atomic regions from SNP 230176 to 230776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,194 DEBUG Processing 860/910 atomic regions from SNP 257766 to 258366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,253 DEBUG Processing 716/1138 atomic regions from SNP 214570 to 215170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,325 DEBUG Processing 769/1028 atomic regions from SNP 230476 to 231076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,416 DEBUG Processing 861/910 atomic regions from SNP 258066 to 258666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,529 DEBUG Processing 717/1138 atomic regions from SNP 214870 to 215470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,574 DEBUG Processing 770/1028 atomic regions from SNP 230776 to 231376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,638 DEBUG Processing 862/910 atomic regions from SNP 258366 to 258966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,791 DEBUG Processing 718/1138 atomic regions from SNP 215170 to 215770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,820 DEBUG Processing 771/1028 atomic regions from SNP 231076 to 231676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,865 DEBUG Processing 863/910 atomic regions from SNP 258666 to 259266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,043 DEBUG Processing 719/1138 atomic regions from SNP 215470 to 216070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,077 DEBUG Processing 772/1028 atomic regions from SNP 231376 to 231976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,093 DEBUG Processing 864/910 atomic regions from SNP 258966 to 259566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,295 DEBUG Processing 720/1138 atomic regions from SNP 215770 to 216370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,323 DEBUG Processing 773/1028 atomic regions from SNP 231676 to 232276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,326 DEBUG Processing 865/910 atomic regions from SNP 259266 to 259866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,546 DEBUG Processing 721/1138 atomic regions from SNP 216070 to 216670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,557 DEBUG Processing 866/910 atomic regions from SNP 259566 to 260166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,571 DEBUG Processing 774/1028 atomic regions from SNP 231976 to 232576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,791 DEBUG Processing 867/910 atomic regions from SNP 259866 to 260466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,801 DEBUG Processing 722/1138 atomic regions from SNP 216370 to 216970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,813 DEBUG Processing 775/1028 atomic regions from SNP 232276 to 232876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,021 DEBUG Processing 868/910 atomic regions from SNP 260166 to 260766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,053 DEBUG Processing 723/1138 atomic regions from SNP 216670 to 217270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,054 DEBUG Processing 776/1028 atomic regions from SNP 232576 to 233176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,251 DEBUG Processing 869/910 atomic regions from SNP 260466 to 261066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,296 DEBUG Processing 777/1028 atomic regions from SNP 232876 to 233476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,305 DEBUG Processing 724/1138 atomic regions from SNP 216970 to 217570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,477 DEBUG Processing 870/910 atomic regions from SNP 260766 to 261366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,540 DEBUG Processing 778/1028 atomic regions from SNP 233176 to 233776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,555 DEBUG Processing 725/1138 atomic regions from SNP 217270 to 217870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,702 DEBUG Processing 871/910 atomic regions from SNP 261066 to 261666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,783 DEBUG Processing 779/1028 atomic regions from SNP 233476 to 234076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,805 DEBUG Processing 726/1138 atomic regions from SNP 217570 to 218170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,925 DEBUG Processing 872/910 atomic regions from SNP 261366 to 261966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,025 DEBUG Processing 780/1028 atomic regions from SNP 233776 to 234376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,053 DEBUG Processing 727/1138 atomic regions from SNP 217870 to 218470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,147 DEBUG Processing 873/910 atomic regions from SNP 261666 to 262266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,268 DEBUG Processing 781/1028 atomic regions from SNP 234076 to 234676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,305 DEBUG Processing 728/1138 atomic regions from SNP 218170 to 218770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,371 DEBUG Processing 874/910 atomic regions from SNP 261966 to 262566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,511 DEBUG Processing 782/1028 atomic regions from SNP 234376 to 234976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,558 DEBUG Processing 729/1138 atomic regions from SNP 218470 to 219070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,596 DEBUG Processing 875/910 atomic regions from SNP 262266 to 262866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,753 DEBUG Processing 783/1028 atomic regions from SNP 234676 to 235276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,813 DEBUG Processing 730/1138 atomic regions from SNP 218770 to 219370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,820 DEBUG Processing 876/910 atomic regions from SNP 262566 to 263166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,993 DEBUG Processing 784/1028 atomic regions from SNP 234976 to 235576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,047 DEBUG Processing 877/910 atomic regions from SNP 262866 to 263466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,081 DEBUG Processing 731/1138 atomic regions from SNP 219070 to 219670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,234 DEBUG Processing 785/1028 atomic regions from SNP 235276 to 235876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,273 DEBUG Processing 878/910 atomic regions from SNP 263166 to 263766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,348 DEBUG Processing 732/1138 atomic regions from SNP 219370 to 219970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,475 DEBUG Processing 786/1028 atomic regions from SNP 235576 to 236176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,498 DEBUG Processing 879/910 atomic regions from SNP 263466 to 264066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,624 DEBUG Processing 733/1138 atomic regions from SNP 219670 to 220270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,716 DEBUG Processing 787/1028 atomic regions from SNP 235876 to 236476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,723 DEBUG Processing 880/910 atomic regions from SNP 263766 to 264366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,906 DEBUG Processing 734/1138 atomic regions from SNP 219970 to 220570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,948 DEBUG Processing 881/910 atomic regions from SNP 264066 to 264666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,956 DEBUG Processing 788/1028 atomic regions from SNP 236176 to 236776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,175 DEBUG Processing 882/910 atomic regions from SNP 264366 to 264966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,183 DEBUG Processing 735/1138 atomic regions from SNP 220270 to 220870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,197 DEBUG Processing 789/1028 atomic regions from SNP 236476 to 237076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,257 DEBUG Subchromosome time: 182.32855967618525, subchromosome SNPs: 196385 2025-01-31 09:46:46,257 DEBUG Estimated BADs: [1.63, 0.41, 0.82, 0.54, 1.63, 0.54, 3.26, 8.16, 3.26, 1.63, 0.54, 1.63, 0.54, 0.82, 1.63, 0.41, 0.82, 1.63, 3.26, 0.82, 0.16, 1.63, 3.26, 4.90, 3.26, 1.63, 3.26, 4.90] SNP counts: [22658, 4228, 6305, 17179, 3953, 9135, 3059, 513, 8344, 3888, 3899, 19261, 27361, 10858, 5358, 4782, 7819, 17406, 6895, 3033, 2945, 2926, 28266, 8726, 10523, 7460, 13495, 2627] SNP IDs counts: [22658, 4228, 6305, 17179, 3953, 9135, 3059, 513, 8344, 3888, 3899, 19261, 27361, 10858, 5358, 4782, 7819, 17406, 6895, 3033, 2945, 2926, 28266, 8726, 10523, 7460, 13495, 2627] Critical gap: 683042bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 16.38Mbp, 18.92Mbp, 22.65Mbp, 32.61Mbp, 34.78Mbp, 40.13Mbp, 41.86Mbp[0.87Mbp], 43.06Mbp, 47.51Mbp, 49.69Mbp, 51.99Mbp, 64.32Mbp, 80.49Mbp, 86.57Mbp, 89.66Mbp, 92.52Mbp, 97.05Mbp, 106.58Mbp, 110.29Mbp, 112.08Mbp, 113.97Mbp, 115.73Mbp, 131.71Mbp, 136.28Mbp, 141.79Mbp, 147.85Mbp, 154.89Mbp, 156.51Mbp] 2025-01-31 09:46:46,257 DEBUG chr4 time: 182.3292146511376 s 2025-01-31 09:46:46,404 DEBUG chr4: Fitting background model for 28 segments 2025-01-31 09:46:46,408 DEBUG Processing 883/910 atomic regions from SNP 264666 to 265266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,443 DEBUG Processing 790/1028 atomic regions from SNP 236776 to 237376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,452 DEBUG Processing 736/1138 atomic regions from SNP 220570 to 221170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,636 DEBUG Processing 884/910 atomic regions from SNP 264966 to 265566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,689 DEBUG Processing 791/1028 atomic regions from SNP 237076 to 237676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,701 DEBUG Processing 737/1138 atomic regions from SNP 220870 to 221470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,866 DEBUG Processing 885/910 atomic regions from SNP 265266 to 265866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,932 DEBUG Processing 792/1028 atomic regions from SNP 237376 to 237976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,949 DEBUG Processing 738/1138 atomic regions from SNP 221170 to 221770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,092 DEBUG Processing 886/910 atomic regions from SNP 265566 to 266166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,173 DEBUG Processing 793/1028 atomic regions from SNP 237676 to 238276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,197 DEBUG Processing 739/1138 atomic regions from SNP 221470 to 222070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,320 DEBUG Processing 887/910 atomic regions from SNP 265866 to 266466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,411 DEBUG Processing 794/1028 atomic regions from SNP 237976 to 238576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,444 DEBUG Processing 740/1138 atomic regions from SNP 221770 to 222370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,546 DEBUG Processing 888/910 atomic regions from SNP 266166 to 266766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,650 DEBUG Processing 795/1028 atomic regions from SNP 238276 to 238876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,690 DEBUG Processing 741/1138 atomic regions from SNP 222070 to 222670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,772 DEBUG Processing 889/910 atomic regions from SNP 266466 to 267066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,889 DEBUG Processing 796/1028 atomic regions from SNP 238576 to 239176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,944 DEBUG Processing 742/1138 atomic regions from SNP 222370 to 222970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,003 DEBUG Processing 890/910 atomic regions from SNP 266766 to 267366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,128 DEBUG Processing 797/1028 atomic regions from SNP 238876 to 239476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,193 DEBUG Processing 743/1138 atomic regions from SNP 222670 to 223270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,230 DEBUG Processing 891/910 atomic regions from SNP 267066 to 267666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,366 DEBUG Processing 798/1028 atomic regions from SNP 239176 to 239776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,441 DEBUG Processing 744/1138 atomic regions from SNP 222970 to 223570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,454 DEBUG Processing 892/910 atomic regions from SNP 267366 to 267966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,603 DEBUG Processing 799/1028 atomic regions from SNP 239476 to 240076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,679 DEBUG Processing 893/910 atomic regions from SNP 267666 to 268266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,689 DEBUG Processing 745/1138 atomic regions from SNP 223270 to 223870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,842 DEBUG Processing 800/1028 atomic regions from SNP 239776 to 240376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,902 DEBUG Processing 894/910 atomic regions from SNP 267966 to 268566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,936 DEBUG Processing 746/1138 atomic regions from SNP 223570 to 224170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,081 DEBUG Processing 801/1028 atomic regions from SNP 240076 to 240676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,127 DEBUG Processing 895/910 atomic regions from SNP 268266 to 268866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,182 DEBUG Processing 747/1138 atomic regions from SNP 223870 to 224470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,318 DEBUG Processing 802/1028 atomic regions from SNP 240376 to 240976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,348 DEBUG Processing 896/910 atomic regions from SNP 268566 to 269166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,428 DEBUG Processing 748/1138 atomic regions from SNP 224170 to 224770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,557 DEBUG Processing 803/1028 atomic regions from SNP 240676 to 241276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,571 DEBUG Processing 897/910 atomic regions from SNP 268866 to 269466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,700 DEBUG Processing 749/1138 atomic regions from SNP 224470 to 225070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,794 DEBUG Processing 898/910 atomic regions from SNP 269166 to 269766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,797 DEBUG Processing 804/1028 atomic regions from SNP 240976 to 241576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,957 DEBUG Processing 750/1138 atomic regions from SNP 224770 to 225370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,026 DEBUG Processing 899/910 atomic regions from SNP 269466 to 270066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,037 DEBUG Processing 805/1028 atomic regions from SNP 241276 to 241876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,229 DEBUG Processing 751/1138 atomic regions from SNP 225070 to 225670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,252 DEBUG Processing 900/910 atomic regions from SNP 269766 to 270366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,277 DEBUG Processing 806/1028 atomic regions from SNP 241576 to 242176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,478 DEBUG Processing 901/910 atomic regions from SNP 270066 to 270666 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,514 DEBUG Processing 752/1138 atomic regions from SNP 225370 to 225970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,519 DEBUG Processing 807/1028 atomic regions from SNP 241876 to 242476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,704 DEBUG Processing 902/910 atomic regions from SNP 270366 to 270966 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,761 DEBUG Processing 808/1028 atomic regions from SNP 242176 to 242776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,784 DEBUG Processing 753/1138 atomic regions from SNP 225670 to 226270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,928 DEBUG Processing 903/910 atomic regions from SNP 270666 to 271266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,004 DEBUG Processing 809/1028 atomic regions from SNP 242476 to 243076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,059 DEBUG Processing 754/1138 atomic regions from SNP 225970 to 226570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,150 DEBUG Processing 904/910 atomic regions from SNP 270966 to 271566 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,247 DEBUG Processing 810/1028 atomic regions from SNP 242776 to 243376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,323 DEBUG Processing 755/1138 atomic regions from SNP 226270 to 226870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,370 DEBUG Processing 905/910 atomic regions from SNP 271266 to 271866 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,485 DEBUG Processing 811/1028 atomic regions from SNP 243076 to 243676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,586 DEBUG Processing 756/1138 atomic regions from SNP 226570 to 227170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,592 DEBUG Processing 906/910 atomic regions from SNP 271566 to 272166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,725 DEBUG Processing 812/1028 atomic regions from SNP 243376 to 243976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,816 DEBUG Processing 907/910 atomic regions from SNP 271866 to 272466 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,855 DEBUG Processing 757/1138 atomic regions from SNP 226870 to 227470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,963 DEBUG Processing 813/1028 atomic regions from SNP 243676 to 244276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,039 DEBUG Processing 908/910 atomic regions from SNP 272166 to 272766 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,129 DEBUG Processing 758/1138 atomic regions from SNP 227170 to 227770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,205 DEBUG Processing 814/1028 atomic regions from SNP 243976 to 244576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,264 DEBUG Processing 909/910 atomic regions from SNP 272466 to 273066 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,415 DEBUG Processing 759/1138 atomic regions from SNP 227470 to 228070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,448 DEBUG Processing 815/1028 atomic regions from SNP 244276 to 244876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,487 DEBUG Processing 910/910 atomic regions from SNP 272766 to 273366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,609 DEBUG Unique SNPs positions in subchromosome 1: 273367 2025-01-31 09:46:52,692 DEBUG Processing 816/1028 atomic regions from SNP 244576 to 245176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,706 DEBUG Processing 760/1138 atomic regions from SNP 227770 to 228370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,932 DEBUG Processing 817/1028 atomic regions from SNP 244876 to 245476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,981 DEBUG Processing 761/1138 atomic regions from SNP 228070 to 228670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,173 DEBUG Processing 818/1028 atomic regions from SNP 245176 to 245776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,245 DEBUG Processing 762/1138 atomic regions from SNP 228370 to 228970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,421 DEBUG Processing 819/1028 atomic regions from SNP 245476 to 246076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,519 DEBUG Processing 763/1138 atomic regions from SNP 228670 to 229270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,532 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:46:53,534 DEBUG chr6: Signal quantile: 0.993. signal threshold: 13. Best RMSEA: 0.019 2025-01-31 09:46:53,666 DEBUG Processing 820/1028 atomic regions from SNP 245776 to 246376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,804 DEBUG Processing 764/1138 atomic regions from SNP 228970 to 229570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,908 DEBUG Processing 821/1028 atomic regions from SNP 246076 to 246676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,079 DEBUG Processing 765/1138 atomic regions from SNP 229270 to 229870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,149 DEBUG Processing 822/1028 atomic regions from SNP 246376 to 246976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,348 DEBUG Processing 766/1138 atomic regions from SNP 229570 to 230170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,388 DEBUG Processing 823/1028 atomic regions from SNP 246676 to 247276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,611 DEBUG Processing 767/1138 atomic regions from SNP 229870 to 230470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,629 DEBUG Processing 824/1028 atomic regions from SNP 246976 to 247576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,876 DEBUG Processing 825/1028 atomic regions from SNP 247276 to 247876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,893 DEBUG Processing 768/1138 atomic regions from SNP 230170 to 230770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,123 DEBUG Processing 826/1028 atomic regions from SNP 247576 to 248176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,180 DEBUG Processing 769/1138 atomic regions from SNP 230470 to 231070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,368 DEBUG Processing 827/1028 atomic regions from SNP 247876 to 248476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,458 DEBUG Processing 770/1138 atomic regions from SNP 230770 to 231370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,612 DEBUG Processing 828/1028 atomic regions from SNP 248176 to 248776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,738 DEBUG Processing 771/1138 atomic regions from SNP 231070 to 231670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,825 DEBUG Subchromosome time: 246.8589382302016, subchromosome SNPs: 259029 2025-01-31 09:46:55,826 DEBUG Estimated BADs: [1.55, 0.52, 1.55, 6.21, 1.55, 6.21, 1.55, 3.11, 1.55, 0.78, 1.55, 0.31, 1.55, 0.39, 1.55, 0.39, 0.78, 1.55, 6.21, 1.55, 4.66, 1.55, 4.66, 1.55, 4.66, 3.11] SNP counts: [4904, 22929, 6144, 1338, 9519, 1399, 2903, 7206, 5974, 19494, 6307, 14703, 9584, 5103, 11699, 9316, 14940, 17108, 791, 17313, 3264, 8895, 9992, 16135, 6760, 25309] SNP IDs counts: [4904, 22929, 6144, 1338, 9519, 1399, 2903, 7206, 5974, 19494, 6307, 14703, 9584, 5103, 11699, 9316, 14940, 17108, 791, 17313, 3264, 8895, 9992, 16135, 6760, 25309] Critical gap: 671373bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.90Mbp, 20.87Mbp, 24.32Mbp, 25.02Mbp, 30.52Mbp, 31.25Mbp, 32.85Mbp, 36.69Mbp, 39.95Mbp, 51.15Mbp, 54.53Mbp, 63.29Mbp, 68.54Mbp, 71.60Mbp, 77.98Mbp, 83.45Mbp, 92.07Mbp, 103.65Mbp, 104.08Mbp, 113.72Mbp, 115.44Mbp, 120.10Mbp, 125.43Mbp, 134.17Mbp, 137.79Mbp, 151.83Mbp] 2025-01-31 09:46:55,826 DEBUG chr5 time: 246.85954470187426 s 2025-01-31 09:46:55,856 DEBUG Processing 829/1028 atomic regions from SNP 248476 to 249076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,979 DEBUG chr5: Fitting background model for 26 segments 2025-01-31 09:46:56,020 DEBUG Processing 772/1138 atomic regions from SNP 231370 to 231970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,035 DEBUG chr6 total SNP count: 259024 2025-01-31 09:46:56,035 DEBUG chr6 length: 149736546 2025-01-31 09:46:56,035 DEBUG ----------------------------------------- 2025-01-31 09:46:56,036 INFO Processing SNPs in chr6 2025-01-31 09:46:56,103 DEBUG Processing 830/1028 atomic regions from SNP 248776 to 249376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,284 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 259024)] 2025-01-31 09:46:56,302 DEBUG Processing 773/1138 atomic regions from SNP 231670 to 232270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,351 DEBUG Processing 831/1028 atomic regions from SNP 249076 to 249676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,454 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:56,578 DEBUG Processing 774/1138 atomic regions from SNP 231970 to 232570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,599 DEBUG Processing 832/1028 atomic regions from SNP 249376 to 249976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,844 DEBUG Processing 833/1028 atomic regions from SNP 249676 to 250276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,846 DEBUG Processing 775/1138 atomic regions from SNP 232270 to 232870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,089 DEBUG Processing 834/1028 atomic regions from SNP 249976 to 250576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,111 DEBUG Processing 776/1138 atomic regions from SNP 232570 to 233170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,337 DEBUG Processing 835/1028 atomic regions from SNP 250276 to 250876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,389 DEBUG Processing 777/1138 atomic regions from SNP 232870 to 233470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,581 DEBUG Processing 836/1028 atomic regions from SNP 250576 to 251176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,655 DEBUG Processing 778/1138 atomic regions from SNP 233170 to 233770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,826 DEBUG Processing 837/1028 atomic regions from SNP 250876 to 251476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,914 DEBUG Processing 779/1138 atomic regions from SNP 233470 to 234070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,068 DEBUG Processing 838/1028 atomic regions from SNP 251176 to 251776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,185 DEBUG Processing 780/1138 atomic regions from SNP 233770 to 234370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,334 DEBUG Processing 839/1028 atomic regions from SNP 251476 to 252076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,465 DEBUG Processing 781/1138 atomic regions from SNP 234070 to 234670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,582 DEBUG Processing 840/1028 atomic regions from SNP 251776 to 252376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,749 DEBUG Processing 782/1138 atomic regions from SNP 234370 to 234970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,838 DEBUG Processing 841/1028 atomic regions from SNP 252076 to 252676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,024 DEBUG Processing 783/1138 atomic regions from SNP 234670 to 235270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,086 DEBUG Processing 842/1028 atomic regions from SNP 252376 to 252976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,295 DEBUG Processing 784/1138 atomic regions from SNP 234970 to 235570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,332 DEBUG Processing 843/1028 atomic regions from SNP 252676 to 253276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,566 DEBUG Processing 785/1138 atomic regions from SNP 235270 to 235870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,574 DEBUG Processing 844/1028 atomic regions from SNP 252976 to 253576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,818 DEBUG Processing 845/1028 atomic regions from SNP 253276 to 253876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,832 DEBUG Processing 786/1138 atomic regions from SNP 235570 to 236170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,058 DEBUG Processing 846/1028 atomic regions from SNP 253576 to 254176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,081 DEBUG Processing 787/1138 atomic regions from SNP 235870 to 236470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,300 DEBUG Processing 847/1028 atomic regions from SNP 253876 to 254476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,327 DEBUG Processing 788/1138 atomic regions from SNP 236170 to 236770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,539 DEBUG Processing 848/1028 atomic regions from SNP 254176 to 254776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,575 DEBUG Processing 789/1138 atomic regions from SNP 236470 to 237070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,779 DEBUG Processing 849/1028 atomic regions from SNP 254476 to 255076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,821 DEBUG Processing 790/1138 atomic regions from SNP 236770 to 237370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,017 DEBUG Processing 850/1028 atomic regions from SNP 254776 to 255376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,071 DEBUG Processing 791/1138 atomic regions from SNP 237070 to 237670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,256 DEBUG Processing 851/1028 atomic regions from SNP 255076 to 255676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,319 DEBUG Processing 792/1138 atomic regions from SNP 237370 to 237970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,495 DEBUG Processing 852/1028 atomic regions from SNP 255376 to 255976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,567 DEBUG Processing 793/1138 atomic regions from SNP 237670 to 238270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,736 DEBUG Processing 853/1028 atomic regions from SNP 255676 to 256276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,817 DEBUG Processing 794/1138 atomic regions from SNP 237970 to 238570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,978 DEBUG Processing 854/1028 atomic regions from SNP 255976 to 256576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,065 DEBUG Processing 795/1138 atomic regions from SNP 238270 to 238870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,219 DEBUG Processing 855/1028 atomic regions from SNP 256276 to 256876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,311 DEBUG Processing 796/1138 atomic regions from SNP 238570 to 239170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,459 DEBUG Processing 856/1028 atomic regions from SNP 256576 to 257176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,556 DEBUG Processing 797/1138 atomic regions from SNP 238870 to 239470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,699 DEBUG Processing 857/1028 atomic regions from SNP 256876 to 257476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,808 DEBUG Processing 798/1138 atomic regions from SNP 239170 to 239770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,940 DEBUG Processing 858/1028 atomic regions from SNP 257176 to 257776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,063 DEBUG Processing 799/1138 atomic regions from SNP 239470 to 240070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,180 DEBUG Processing 859/1028 atomic regions from SNP 257476 to 258076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,326 DEBUG Processing 800/1138 atomic regions from SNP 239770 to 240370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,418 DEBUG Processing 860/1028 atomic regions from SNP 257776 to 258376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,594 DEBUG Processing 801/1138 atomic regions from SNP 240070 to 240670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,659 DEBUG Processing 861/1028 atomic regions from SNP 258076 to 258676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,842 DEBUG Processing 802/1138 atomic regions from SNP 240370 to 240970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,900 DEBUG Processing 862/1028 atomic regions from SNP 258376 to 258976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,093 DEBUG Processing 803/1138 atomic regions from SNP 240670 to 241270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,142 DEBUG Processing 863/1028 atomic regions from SNP 258676 to 259276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,340 DEBUG Processing 804/1138 atomic regions from SNP 240970 to 241570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,384 DEBUG Processing 864/1028 atomic regions from SNP 258976 to 259576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,596 DEBUG Processing 805/1138 atomic regions from SNP 241270 to 241870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,629 DEBUG Processing 865/1028 atomic regions from SNP 259276 to 259876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,846 DEBUG Processing 806/1138 atomic regions from SNP 241570 to 242170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,872 DEBUG Processing 866/1028 atomic regions from SNP 259576 to 260176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,097 DEBUG Processing 807/1138 atomic regions from SNP 241870 to 242470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,114 DEBUG Processing 867/1028 atomic regions from SNP 259876 to 260476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,348 DEBUG Processing 808/1138 atomic regions from SNP 242170 to 242770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,357 DEBUG Processing 868/1028 atomic regions from SNP 260176 to 260776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,600 DEBUG Processing 869/1028 atomic regions from SNP 260476 to 261076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,602 DEBUG Processing 809/1138 atomic regions from SNP 242470 to 243070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,839 DEBUG Processing 870/1028 atomic regions from SNP 260776 to 261376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,855 DEBUG Processing 810/1138 atomic regions from SNP 242770 to 243370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,083 DEBUG Processing 871/1028 atomic regions from SNP 261076 to 261676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,106 DEBUG Processing 811/1138 atomic regions from SNP 243070 to 243670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,326 DEBUG Processing 872/1028 atomic regions from SNP 261376 to 261976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,357 DEBUG Processing 812/1138 atomic regions from SNP 243370 to 243970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,572 DEBUG Processing 873/1028 atomic regions from SNP 261676 to 262276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,611 DEBUG Processing 813/1138 atomic regions from SNP 243670 to 244270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,810 DEBUG Processing 874/1028 atomic regions from SNP 261976 to 262576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,865 DEBUG Processing 814/1138 atomic regions from SNP 243970 to 244570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,050 DEBUG Processing 875/1028 atomic regions from SNP 262276 to 262876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,119 DEBUG Processing 815/1138 atomic regions from SNP 244270 to 244870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,286 DEBUG Processing 876/1028 atomic regions from SNP 262576 to 263176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,374 DEBUG Processing 816/1138 atomic regions from SNP 244570 to 245170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,525 DEBUG Processing 877/1028 atomic regions from SNP 262876 to 263476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,627 DEBUG Processing 817/1138 atomic regions from SNP 244870 to 245470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,762 DEBUG Processing 878/1028 atomic regions from SNP 263176 to 263776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,880 DEBUG Processing 818/1138 atomic regions from SNP 245170 to 245770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,001 DEBUG Processing 879/1028 atomic regions from SNP 263476 to 264076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,131 DEBUG Processing 819/1138 atomic regions from SNP 245470 to 246070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,252 DEBUG Processing 880/1028 atomic regions from SNP 263776 to 264376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,382 DEBUG Processing 820/1138 atomic regions from SNP 245770 to 246370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,508 DEBUG Processing 881/1028 atomic regions from SNP 264076 to 264676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,634 DEBUG Processing 821/1138 atomic regions from SNP 246070 to 246670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,748 DEBUG Processing 882/1028 atomic regions from SNP 264376 to 264976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,884 DEBUG Processing 822/1138 atomic regions from SNP 246370 to 246970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,988 DEBUG Processing 883/1028 atomic regions from SNP 264676 to 265276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,136 DEBUG Processing 823/1138 atomic regions from SNP 246670 to 247270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,226 DEBUG Processing 884/1028 atomic regions from SNP 264976 to 265576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,386 DEBUG Processing 824/1138 atomic regions from SNP 246970 to 247570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,466 DEBUG Processing 885/1028 atomic regions from SNP 265276 to 265876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,634 DEBUG Processing 825/1138 atomic regions from SNP 247270 to 247870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,711 DEBUG Processing 886/1028 atomic regions from SNP 265576 to 266176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,886 DEBUG Processing 826/1138 atomic regions from SNP 247570 to 248170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,964 DEBUG Processing 887/1028 atomic regions from SNP 265876 to 266476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,150 DEBUG Processing 827/1138 atomic regions from SNP 247870 to 248470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,231 DEBUG Processing 888/1028 atomic regions from SNP 266176 to 266776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,414 DEBUG Processing 828/1138 atomic regions from SNP 248170 to 248770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,492 DEBUG Processing 889/1028 atomic regions from SNP 266476 to 267076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,665 DEBUG Processing 829/1138 atomic regions from SNP 248470 to 249070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,748 DEBUG Processing 890/1028 atomic regions from SNP 266776 to 267376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,917 DEBUG Processing 830/1138 atomic regions from SNP 248770 to 249370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,019 DEBUG Processing 891/1028 atomic regions from SNP 267076 to 267676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,168 DEBUG Processing 831/1138 atomic regions from SNP 249070 to 249670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,273 DEBUG Processing 892/1028 atomic regions from SNP 267376 to 267976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,418 DEBUG Processing 832/1138 atomic regions from SNP 249370 to 249970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,524 DEBUG Processing 893/1028 atomic regions from SNP 267676 to 268276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,670 DEBUG Processing 833/1138 atomic regions from SNP 249670 to 250270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,784 DEBUG Processing 894/1028 atomic regions from SNP 267976 to 268576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,917 DEBUG Processing 834/1138 atomic regions from SNP 249970 to 250570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,048 DEBUG Processing 895/1028 atomic regions from SNP 268276 to 268876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,168 DEBUG Processing 835/1138 atomic regions from SNP 250270 to 250870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,321 DEBUG Processing 896/1028 atomic regions from SNP 268576 to 269176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,422 DEBUG Processing 836/1138 atomic regions from SNP 250570 to 251170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,584 DEBUG Processing 897/1028 atomic regions from SNP 268876 to 269476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,676 DEBUG Processing 837/1138 atomic regions from SNP 250870 to 251470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,834 DEBUG Processing 898/1028 atomic regions from SNP 269176 to 269776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,928 DEBUG Processing 838/1138 atomic regions from SNP 251170 to 251770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,074 DEBUG Processing 899/1028 atomic regions from SNP 269476 to 270076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,179 DEBUG Processing 839/1138 atomic regions from SNP 251470 to 252070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,316 DEBUG Processing 900/1028 atomic regions from SNP 269776 to 270376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,431 DEBUG Processing 840/1138 atomic regions from SNP 251770 to 252370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,576 DEBUG Processing 901/1028 atomic regions from SNP 270076 to 270676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,681 DEBUG Processing 841/1138 atomic regions from SNP 252070 to 252670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,845 DEBUG Processing 902/1028 atomic regions from SNP 270376 to 270976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,935 DEBUG Processing 842/1138 atomic regions from SNP 252370 to 252970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,117 DEBUG Processing 903/1028 atomic regions from SNP 270676 to 271276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,160 DEBUG Subchromosome time: 265.1077485587448, subchromosome SNPs: 273367 2025-01-31 09:47:14,160 DEBUG Estimated BADs: [0.86, 3.45, 0.86, 3.45, 0.86, 1.72, 0.34, 1.72, 0.22, 3.45, 10.34, 1.72, 0.86, 1.72, 3.45, 8.62, 1.72, 10.34, 3.45, 5.17, 0.86, 5.17, 1.72, 3.45, 1.72, 6.89, 1.72, 0.25, 0.86, 0.29, 0.86, 0.25] SNP counts: [9833, 2398, 14464, 1378, 14787, 17003, 3591, 2714, 11535, 3869, 1091, 33596, 14783, 8045, 6940, 5043, 5869, 4325, 6266, 15655, 11393, 2081, 7850, 17631, 7924, 1002, 6091, 4516, 9295, 8088, 11409, 2902] SNP IDs counts: [9833, 2398, 14464, 1378, 14787, 17003, 3591, 2714, 11535, 3869, 1091, 33596, 14783, 8045, 6940, 5043, 5869, 4325, 6266, 15655, 11393, 2081, 7850, 17631, 7924, 1002, 6091, 4516, 9295, 8088, 11409, 2902] Critical gap: 689632bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.89Mbp, 10.23Mbp, 19.13Mbp, 19.89Mbp, 28.53Mbp, 38.00Mbp, 40.10Mbp, 41.69Mbp, 48.90Mbp, 51.15Mbp, 51.73Mbp, 70.88Mbp, 79.51Mbp, 84.01Mbp, 87.73Mbp, 90.43Mbp, 94.36Mbp, 96.76Mbp, 100.41Mbp, 108.83Mbp, 115.66Mbp, 116.77Mbp, 121.15Mbp, 130.73Mbp, 135.27Mbp, 135.79Mbp, 139.20Mbp, 141.98Mbp, 147.09Mbp, 151.73Mbp, 158.08Mbp, 160.04Mbp] 2025-01-31 09:47:14,160 DEBUG chr3 time: 265.10833559185266 s 2025-01-31 09:47:14,191 DEBUG Processing 843/1138 atomic regions from SNP 252670 to 253270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,325 DEBUG chr3: Fitting background model for 32 segments 2025-01-31 09:47:14,367 DEBUG Processing 904/1028 atomic regions from SNP 270976 to 271576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,452 DEBUG Processing 844/1138 atomic regions from SNP 252970 to 253570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,632 DEBUG Processing 905/1028 atomic regions from SNP 271276 to 271876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,710 DEBUG Processing 845/1138 atomic regions from SNP 253270 to 253870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,885 DEBUG Processing 906/1028 atomic regions from SNP 271576 to 272176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,975 DEBUG Processing 846/1138 atomic regions from SNP 253570 to 254170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,138 DEBUG Processing 907/1028 atomic regions from SNP 271876 to 272476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,224 DEBUG Processing 847/1138 atomic regions from SNP 253870 to 254470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,397 DEBUG Processing 908/1028 atomic regions from SNP 272176 to 272776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,474 DEBUG Processing 848/1138 atomic regions from SNP 254170 to 254770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,660 DEBUG Processing 909/1028 atomic regions from SNP 272476 to 273076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,725 DEBUG Processing 849/1138 atomic regions from SNP 254470 to 255070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,921 DEBUG Processing 910/1028 atomic regions from SNP 272776 to 273376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,976 DEBUG Processing 850/1138 atomic regions from SNP 254770 to 255370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,179 DEBUG Processing 911/1028 atomic regions from SNP 273076 to 273676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,226 DEBUG Processing 851/1138 atomic regions from SNP 255070 to 255670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,442 DEBUG Processing 912/1028 atomic regions from SNP 273376 to 273976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,475 DEBUG Processing 852/1138 atomic regions from SNP 255370 to 255970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,693 DEBUG Processing 913/1028 atomic regions from SNP 273676 to 274276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,725 DEBUG Processing 853/1138 atomic regions from SNP 255670 to 256270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,944 DEBUG Processing 914/1028 atomic regions from SNP 273976 to 274576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,974 DEBUG Processing 854/1138 atomic regions from SNP 255970 to 256570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,206 DEBUG Processing 915/1028 atomic regions from SNP 274276 to 274876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,228 DEBUG Processing 855/1138 atomic regions from SNP 256270 to 256870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,479 DEBUG Processing 916/1028 atomic regions from SNP 274576 to 275176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,481 DEBUG Processing 856/1138 atomic regions from SNP 256570 to 257170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,734 DEBUG Processing 857/1138 atomic regions from SNP 256870 to 257470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,751 DEBUG Processing 917/1028 atomic regions from SNP 274876 to 275476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,986 DEBUG Processing 858/1138 atomic regions from SNP 257170 to 257770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,017 DEBUG Processing 918/1028 atomic regions from SNP 275176 to 275776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,237 DEBUG Processing 859/1138 atomic regions from SNP 257470 to 258070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,275 DEBUG Processing 919/1028 atomic regions from SNP 275476 to 276076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,491 DEBUG Processing 860/1138 atomic regions from SNP 257770 to 258370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,541 DEBUG Processing 920/1028 atomic regions from SNP 275776 to 276376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,740 DEBUG Processing 861/1138 atomic regions from SNP 258070 to 258670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,805 DEBUG Processing 921/1028 atomic regions from SNP 276076 to 276676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,988 DEBUG Processing 862/1138 atomic regions from SNP 258370 to 258970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,056 DEBUG Processing 922/1028 atomic regions from SNP 276376 to 276976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,235 DEBUG Processing 863/1138 atomic regions from SNP 258670 to 259270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,305 DEBUG Processing 923/1028 atomic regions from SNP 276676 to 277276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,483 DEBUG Processing 864/1138 atomic regions from SNP 258970 to 259570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,560 DEBUG Processing 924/1028 atomic regions from SNP 276976 to 277576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,749 DEBUG Processing 865/1138 atomic regions from SNP 259270 to 259870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,819 DEBUG Processing 925/1028 atomic regions from SNP 277276 to 277876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,001 DEBUG Processing 866/1138 atomic regions from SNP 259570 to 260170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,076 DEBUG Processing 926/1028 atomic regions from SNP 277576 to 278176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,248 DEBUG Processing 867/1138 atomic regions from SNP 259870 to 260470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,329 DEBUG Processing 927/1028 atomic regions from SNP 277876 to 278476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,496 DEBUG Processing 868/1138 atomic regions from SNP 260170 to 260770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,586 DEBUG Processing 928/1028 atomic regions from SNP 278176 to 278776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,762 DEBUG Processing 869/1138 atomic regions from SNP 260470 to 261070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,839 DEBUG Processing 929/1028 atomic regions from SNP 278476 to 279076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,039 DEBUG Processing 870/1138 atomic regions from SNP 260770 to 261370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,076 DEBUG Processing 930/1028 atomic regions from SNP 278776 to 279376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,312 DEBUG Processing 871/1138 atomic regions from SNP 261070 to 261670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,314 DEBUG Processing 931/1028 atomic regions from SNP 279076 to 279676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,554 DEBUG Processing 932/1028 atomic regions from SNP 279376 to 279976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,572 DEBUG Processing 872/1138 atomic regions from SNP 261370 to 261970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,793 DEBUG Processing 933/1028 atomic regions from SNP 279676 to 280276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,824 DEBUG Processing 873/1138 atomic regions from SNP 261670 to 262270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,031 DEBUG Processing 934/1028 atomic regions from SNP 279976 to 280576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,083 DEBUG Processing 874/1138 atomic regions from SNP 261970 to 262570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,269 DEBUG Processing 935/1028 atomic regions from SNP 280276 to 280876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,332 DEBUG Processing 875/1138 atomic regions from SNP 262270 to 262870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,505 DEBUG Processing 936/1028 atomic regions from SNP 280576 to 281176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,578 DEBUG Processing 876/1138 atomic regions from SNP 262570 to 263170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,741 DEBUG Processing 937/1028 atomic regions from SNP 280876 to 281476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,824 DEBUG Processing 877/1138 atomic regions from SNP 262870 to 263470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,980 DEBUG Processing 938/1028 atomic regions from SNP 281176 to 281776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,072 DEBUG Processing 878/1138 atomic regions from SNP 263170 to 263770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,220 DEBUG Processing 939/1028 atomic regions from SNP 281476 to 282076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,319 DEBUG Processing 879/1138 atomic regions from SNP 263470 to 264070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,475 DEBUG Processing 940/1028 atomic regions from SNP 281776 to 282376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,577 DEBUG Processing 880/1138 atomic regions from SNP 263770 to 264370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,722 DEBUG Processing 941/1028 atomic regions from SNP 282076 to 282676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,843 DEBUG Processing 881/1138 atomic regions from SNP 264070 to 264670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,961 DEBUG Processing 942/1028 atomic regions from SNP 282376 to 282976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,095 DEBUG Processing 882/1138 atomic regions from SNP 264370 to 264970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,198 DEBUG Processing 943/1028 atomic regions from SNP 282676 to 283276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,351 DEBUG Processing 883/1138 atomic regions from SNP 264670 to 265270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,435 DEBUG Processing 944/1028 atomic regions from SNP 282976 to 283576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,608 DEBUG Processing 884/1138 atomic regions from SNP 264970 to 265570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,675 DEBUG Processing 945/1028 atomic regions from SNP 283276 to 283876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,859 DEBUG Processing 885/1138 atomic regions from SNP 265270 to 265870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,913 DEBUG Processing 946/1028 atomic regions from SNP 283576 to 284176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,110 DEBUG Processing 886/1138 atomic regions from SNP 265570 to 266170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,152 DEBUG Processing 947/1028 atomic regions from SNP 283876 to 284476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,370 DEBUG Processing 887/1138 atomic regions from SNP 265870 to 266470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,394 DEBUG Processing 948/1028 atomic regions from SNP 284176 to 284776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,630 DEBUG Processing 888/1138 atomic regions from SNP 266170 to 266770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,641 DEBUG Processing 949/1028 atomic regions from SNP 284476 to 285076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,883 DEBUG Processing 889/1138 atomic regions from SNP 266470 to 267070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,883 DEBUG Processing 950/1028 atomic regions from SNP 284776 to 285376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,126 DEBUG Processing 951/1028 atomic regions from SNP 285076 to 285676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,137 DEBUG Processing 890/1138 atomic regions from SNP 266770 to 267370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,369 DEBUG Processing 952/1028 atomic regions from SNP 285376 to 285976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,390 DEBUG Processing 891/1138 atomic regions from SNP 267070 to 267670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,617 DEBUG Processing 953/1028 atomic regions from SNP 285676 to 286276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,644 DEBUG Processing 892/1138 atomic regions from SNP 267370 to 267970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,877 DEBUG Processing 954/1028 atomic regions from SNP 285976 to 286576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,906 DEBUG Processing 893/1138 atomic regions from SNP 267670 to 268270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,122 DEBUG Processing 955/1028 atomic regions from SNP 286276 to 286876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,188 DEBUG Processing 894/1138 atomic regions from SNP 267970 to 268570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,376 DEBUG Processing 956/1028 atomic regions from SNP 286576 to 287176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,471 DEBUG Processing 895/1138 atomic regions from SNP 268270 to 268870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,640 DEBUG Processing 957/1028 atomic regions from SNP 286876 to 287476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,745 DEBUG Processing 896/1138 atomic regions from SNP 268570 to 269170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,897 DEBUG Processing 958/1028 atomic regions from SNP 287176 to 287776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,022 DEBUG Processing 897/1138 atomic regions from SNP 268870 to 269470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,154 DEBUG Processing 959/1028 atomic regions from SNP 287476 to 288076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,294 DEBUG Processing 898/1138 atomic regions from SNP 269170 to 269770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,394 DEBUG Processing 960/1028 atomic regions from SNP 287776 to 288376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,564 DEBUG Processing 899/1138 atomic regions from SNP 269470 to 270070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,634 DEBUG Processing 961/1028 atomic regions from SNP 288076 to 288676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,840 DEBUG Processing 900/1138 atomic regions from SNP 269770 to 270370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,875 DEBUG Processing 962/1028 atomic regions from SNP 288376 to 288976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,126 DEBUG Processing 901/1138 atomic regions from SNP 270070 to 270670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,134 DEBUG Processing 963/1028 atomic regions from SNP 288676 to 289276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,359 DEBUG Segmenting atomic regions: 2025-01-31 09:47:29,386 DEBUG Processing 964/1028 atomic regions from SNP 288976 to 289576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,400 DEBUG Processing 902/1138 atomic regions from SNP 270370 to 270970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,467 DEBUG Processing 1/862 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,656 DEBUG Processing 965/1028 atomic regions from SNP 289276 to 289876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,675 DEBUG Processing 2/862 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,684 DEBUG Processing 903/1138 atomic regions from SNP 270670 to 271270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,885 DEBUG Processing 3/862 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,938 DEBUG Processing 966/1028 atomic regions from SNP 289576 to 290176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,971 DEBUG Processing 904/1138 atomic regions from SNP 270970 to 271570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,094 DEBUG Processing 4/862 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,203 DEBUG Processing 967/1028 atomic regions from SNP 289876 to 290476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,252 DEBUG Processing 905/1138 atomic regions from SNP 271270 to 271870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,301 DEBUG Processing 5/862 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,456 DEBUG Processing 968/1028 atomic regions from SNP 290176 to 290776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,520 DEBUG Processing 6/862 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,543 DEBUG Processing 906/1138 atomic regions from SNP 271570 to 272170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,722 DEBUG Processing 969/1028 atomic regions from SNP 290476 to 291076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,736 DEBUG Processing 7/862 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,825 DEBUG Processing 907/1138 atomic regions from SNP 271870 to 272470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,946 DEBUG Processing 8/862 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,975 DEBUG Processing 970/1028 atomic regions from SNP 290776 to 291376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,089 DEBUG Processing 908/1138 atomic regions from SNP 272170 to 272770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,156 DEBUG Processing 9/862 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,218 DEBUG Processing 971/1028 atomic regions from SNP 291076 to 291676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,361 DEBUG Processing 909/1138 atomic regions from SNP 272470 to 273070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,378 DEBUG Processing 10/862 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,485 DEBUG Processing 972/1028 atomic regions from SNP 291376 to 291976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,591 DEBUG Processing 11/862 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,624 DEBUG Processing 910/1138 atomic regions from SNP 272770 to 273370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,754 DEBUG Processing 973/1028 atomic regions from SNP 291676 to 292276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,802 DEBUG Processing 12/862 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,880 DEBUG Processing 911/1138 atomic regions from SNP 273070 to 273670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,009 DEBUG Processing 974/1028 atomic regions from SNP 291976 to 292576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,024 DEBUG Processing 13/862 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,128 DEBUG Processing 912/1138 atomic regions from SNP 273370 to 273970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,250 DEBUG Processing 975/1028 atomic regions from SNP 292276 to 292876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,258 DEBUG Processing 14/862 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,389 DEBUG Processing 913/1138 atomic regions from SNP 273670 to 274270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,466 DEBUG Processing 15/862 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,491 DEBUG Processing 976/1028 atomic regions from SNP 292576 to 293176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,662 DEBUG Processing 914/1138 atomic regions from SNP 273970 to 274570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,675 DEBUG Processing 16/862 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,739 DEBUG Processing 977/1028 atomic regions from SNP 292876 to 293476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,886 DEBUG Processing 17/862 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,912 DEBUG Processing 915/1138 atomic regions from SNP 274270 to 274870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,997 DEBUG Processing 978/1028 atomic regions from SNP 293176 to 293776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,093 DEBUG Processing 18/862 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,163 DEBUG Processing 916/1138 atomic regions from SNP 274570 to 275170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,263 DEBUG Processing 979/1028 atomic regions from SNP 293476 to 294076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,303 DEBUG Processing 19/862 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,412 DEBUG Processing 917/1138 atomic regions from SNP 274870 to 275470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,511 DEBUG Processing 20/862 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,533 DEBUG Processing 980/1028 atomic regions from SNP 293776 to 294376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,659 DEBUG Processing 918/1138 atomic regions from SNP 275170 to 275770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,723 DEBUG Processing 21/862 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,799 DEBUG Processing 981/1028 atomic regions from SNP 294076 to 294676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,915 DEBUG Processing 919/1138 atomic regions from SNP 275470 to 276070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,935 DEBUG Processing 22/862 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,069 DEBUG Processing 982/1028 atomic regions from SNP 294376 to 294976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,146 DEBUG Processing 23/862 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,177 DEBUG Processing 920/1138 atomic regions from SNP 275770 to 276370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,343 DEBUG Processing 983/1028 atomic regions from SNP 294676 to 295276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,356 DEBUG Processing 24/862 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,429 DEBUG Processing 921/1138 atomic regions from SNP 276070 to 276670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,566 DEBUG Processing 25/862 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,620 DEBUG Processing 984/1028 atomic regions from SNP 294976 to 295576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,680 DEBUG Processing 922/1138 atomic regions from SNP 276370 to 276970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,774 DEBUG Processing 26/862 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,893 DEBUG Processing 985/1028 atomic regions from SNP 295276 to 295876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,932 DEBUG Processing 923/1138 atomic regions from SNP 276670 to 277270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,982 DEBUG Processing 27/862 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,167 DEBUG Processing 986/1028 atomic regions from SNP 295576 to 296176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,184 DEBUG Processing 924/1138 atomic regions from SNP 276970 to 277570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,206 DEBUG Processing 28/862 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,419 DEBUG Processing 29/862 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,439 DEBUG Processing 987/1028 atomic regions from SNP 295876 to 296476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,451 DEBUG Processing 925/1138 atomic regions from SNP 277270 to 277870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,630 DEBUG Processing 30/862 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,688 DEBUG Processing 988/1028 atomic regions from SNP 296176 to 296776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,725 DEBUG Processing 926/1138 atomic regions from SNP 277570 to 278170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,853 DEBUG Processing 31/862 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,929 DEBUG Processing 989/1028 atomic regions from SNP 296476 to 297076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,997 DEBUG Processing 927/1138 atomic regions from SNP 277870 to 278470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,085 DEBUG Processing 32/862 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,170 DEBUG Processing 990/1028 atomic regions from SNP 296776 to 297376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,253 DEBUG Processing 928/1138 atomic regions from SNP 278170 to 278770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,306 DEBUG Processing 33/862 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,414 DEBUG Processing 991/1028 atomic regions from SNP 297076 to 297676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,515 DEBUG Processing 34/862 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,525 DEBUG Processing 929/1138 atomic regions from SNP 278470 to 279070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,657 DEBUG Processing 992/1028 atomic regions from SNP 297376 to 297976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,726 DEBUG Processing 35/862 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,799 DEBUG Processing 930/1138 atomic regions from SNP 278770 to 279370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,900 DEBUG Processing 993/1028 atomic regions from SNP 297676 to 298276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,941 DEBUG Processing 36/862 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,083 DEBUG Processing 931/1138 atomic regions from SNP 279070 to 279670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,143 DEBUG Processing 994/1028 atomic regions from SNP 297976 to 298576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,153 DEBUG Processing 37/862 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,365 DEBUG Processing 38/862 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,370 DEBUG Processing 932/1138 atomic regions from SNP 279370 to 279970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,387 DEBUG Processing 995/1028 atomic regions from SNP 298276 to 298876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,582 DEBUG Processing 39/862 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,642 DEBUG Processing 996/1028 atomic regions from SNP 298576 to 299176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,659 DEBUG Processing 933/1138 atomic regions from SNP 279670 to 280270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,789 DEBUG Processing 40/862 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,895 DEBUG Processing 997/1028 atomic regions from SNP 298876 to 299476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,920 DEBUG Processing 934/1138 atomic regions from SNP 279970 to 280570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,999 DEBUG Processing 41/862 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,142 DEBUG Processing 998/1028 atomic regions from SNP 299176 to 299776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,196 DEBUG Processing 935/1138 atomic regions from SNP 280270 to 280870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,213 DEBUG Processing 42/862 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,413 DEBUG Processing 999/1028 atomic regions from SNP 299476 to 300076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,425 DEBUG Processing 43/862 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,477 DEBUG Processing 936/1138 atomic regions from SNP 280570 to 281170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,637 DEBUG Processing 44/862 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,692 DEBUG Processing 1000/1028 atomic regions from SNP 299776 to 300376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,753 DEBUG Processing 937/1138 atomic regions from SNP 280870 to 281470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,845 DEBUG Processing 45/862 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,943 DEBUG Processing 1001/1028 atomic regions from SNP 300076 to 300676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,021 DEBUG Processing 938/1138 atomic regions from SNP 281170 to 281770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,050 DEBUG Processing 46/862 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,191 DEBUG Processing 1002/1028 atomic regions from SNP 300376 to 300976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,257 DEBUG Processing 47/862 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,278 DEBUG Processing 939/1138 atomic regions from SNP 281470 to 282070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,434 DEBUG Processing 1003/1028 atomic regions from SNP 300676 to 301276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,465 DEBUG Processing 48/862 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,554 DEBUG Processing 940/1138 atomic regions from SNP 281770 to 282370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,676 DEBUG Processing 49/862 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,679 DEBUG Processing 1004/1028 atomic regions from SNP 300976 to 301576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,839 DEBUG Processing 941/1138 atomic regions from SNP 282070 to 282670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,889 DEBUG Processing 50/862 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,927 DEBUG Processing 1005/1028 atomic regions from SNP 301276 to 301876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,096 DEBUG Processing 942/1138 atomic regions from SNP 282370 to 282970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,101 DEBUG Processing 51/862 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,172 DEBUG Processing 1006/1028 atomic regions from SNP 301576 to 302176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,312 DEBUG Processing 52/862 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,346 DEBUG Processing 943/1138 atomic regions from SNP 282670 to 283270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,412 DEBUG Processing 1007/1028 atomic regions from SNP 301876 to 302476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,518 DEBUG Processing 53/862 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,597 DEBUG Processing 944/1138 atomic regions from SNP 282970 to 283570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,617 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:47:40,656 DEBUG Processing 1008/1028 atomic regions from SNP 302176 to 302776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,727 DEBUG Processing 54/862 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,855 DEBUG Processing 945/1138 atomic regions from SNP 283270 to 283870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,905 DEBUG Processing 1009/1028 atomic regions from SNP 302476 to 303076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,941 DEBUG Processing 55/862 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,114 DEBUG Processing 946/1138 atomic regions from SNP 283570 to 284170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,155 DEBUG Processing 1010/1028 atomic regions from SNP 302776 to 303376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,161 DEBUG Processing 56/862 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,371 DEBUG Processing 947/1138 atomic regions from SNP 283870 to 284470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,377 DEBUG Processing 57/862 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,404 DEBUG Processing 1011/1028 atomic regions from SNP 303076 to 303676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,593 DEBUG Processing 58/862 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,627 DEBUG Processing 948/1138 atomic regions from SNP 284170 to 284770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,648 DEBUG Processing 1012/1028 atomic regions from SNP 303376 to 303976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,812 DEBUG Processing 59/862 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,893 DEBUG Processing 949/1138 atomic regions from SNP 284470 to 285070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,922 DEBUG Processing 1013/1028 atomic regions from SNP 303676 to 304276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,022 DEBUG Processing 60/862 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,155 DEBUG Processing 950/1138 atomic regions from SNP 284770 to 285370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,176 DEBUG Processing 1014/1028 atomic regions from SNP 303976 to 304576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,231 DEBUG Processing 61/862 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,416 DEBUG Processing 1015/1028 atomic regions from SNP 304276 to 304876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,426 DEBUG Processing 951/1138 atomic regions from SNP 285070 to 285670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,439 DEBUG Processing 62/862 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,648 DEBUG Processing 63/862 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,660 DEBUG Processing 1016/1028 atomic regions from SNP 304576 to 305176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,681 DEBUG Processing 952/1138 atomic regions from SNP 285370 to 285970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,855 DEBUG Processing 64/862 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,924 DEBUG Processing 1017/1028 atomic regions from SNP 304876 to 305476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,933 DEBUG Processing 953/1138 atomic regions from SNP 285670 to 286270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,064 DEBUG Processing 65/862 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,182 DEBUG Processing 1018/1028 atomic regions from SNP 305176 to 305776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,185 DEBUG Processing 954/1138 atomic regions from SNP 285970 to 286570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,275 DEBUG Processing 66/862 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,426 DEBUG Processing 1019/1028 atomic regions from SNP 305476 to 306076 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,447 DEBUG Processing 955/1138 atomic regions from SNP 286270 to 286870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,487 DEBUG Processing 67/862 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,668 DEBUG Processing 1020/1028 atomic regions from SNP 305776 to 306376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,697 DEBUG Processing 68/862 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,729 DEBUG Processing 956/1138 atomic regions from SNP 286570 to 287170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,904 DEBUG Processing 69/862 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,908 DEBUG Processing 1021/1028 atomic regions from SNP 306076 to 306676 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,006 DEBUG Processing 957/1138 atomic regions from SNP 286870 to 287470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,109 DEBUG Processing 70/862 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,148 DEBUG Processing 1022/1028 atomic regions from SNP 306376 to 306976 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,285 DEBUG Processing 958/1138 atomic regions from SNP 287170 to 287770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,317 DEBUG Processing 71/862 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,387 DEBUG Processing 1023/1028 atomic regions from SNP 306676 to 307276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,527 DEBUG Processing 72/862 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,569 DEBUG Processing 959/1138 atomic regions from SNP 287470 to 288070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,626 DEBUG Processing 1024/1028 atomic regions from SNP 306976 to 307576 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,739 DEBUG Processing 73/862 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,859 DEBUG Processing 960/1138 atomic regions from SNP 287770 to 288370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,889 DEBUG Processing 1025/1028 atomic regions from SNP 307276 to 307876 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,950 DEBUG Processing 74/862 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,145 DEBUG Processing 961/1138 atomic regions from SNP 288070 to 288670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,159 DEBUG Processing 75/862 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,163 DEBUG Processing 1026/1028 atomic regions from SNP 307576 to 308176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,365 DEBUG Processing 76/862 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,417 DEBUG Processing 1027/1028 atomic regions from SNP 307876 to 308476 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,419 DEBUG Processing 962/1138 atomic regions from SNP 288370 to 288970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,572 DEBUG Processing 77/862 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,665 DEBUG Processing 1028/1028 atomic regions from SNP 308176 to 308776 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,679 DEBUG Processing 963/1138 atomic regions from SNP 288670 to 289270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,782 DEBUG Processing 78/862 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,792 DEBUG Unique SNPs positions in subchromosome 1: 308777 2025-01-31 09:47:45,938 DEBUG Processing 964/1138 atomic regions from SNP 288970 to 289570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,998 DEBUG Processing 79/862 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,189 DEBUG Processing 965/1138 atomic regions from SNP 289270 to 289870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,213 DEBUG Processing 80/862 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,425 DEBUG Processing 81/862 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,447 DEBUG Processing 966/1138 atomic regions from SNP 289570 to 290170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,633 DEBUG Processing 82/862 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,698 DEBUG Processing 967/1138 atomic regions from SNP 289870 to 290470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,844 DEBUG Processing 83/862 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,971 DEBUG Processing 968/1138 atomic regions from SNP 290170 to 290770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,079 DEBUG Processing 84/862 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,257 DEBUG Processing 969/1138 atomic regions from SNP 290470 to 291070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,312 DEBUG Processing 85/862 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,524 DEBUG Processing 970/1138 atomic regions from SNP 290770 to 291370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,529 DEBUG Processing 86/862 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,744 DEBUG Processing 87/862 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,778 DEBUG Processing 971/1138 atomic regions from SNP 291070 to 291670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,959 DEBUG Processing 88/862 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,040 DEBUG Processing 972/1138 atomic regions from SNP 291370 to 291970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,172 DEBUG Processing 89/862 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,293 DEBUG Processing 973/1138 atomic regions from SNP 291670 to 292270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,381 DEBUG Processing 90/862 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,553 DEBUG Processing 974/1138 atomic regions from SNP 291970 to 292570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,586 DEBUG Processing 91/862 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,795 DEBUG Processing 92/862 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,834 DEBUG Processing 975/1138 atomic regions from SNP 292270 to 292870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,014 DEBUG Processing 93/862 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,103 DEBUG Processing 976/1138 atomic regions from SNP 292570 to 293170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,237 DEBUG Processing 94/862 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,355 DEBUG Processing 977/1138 atomic regions from SNP 292870 to 293470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,457 DEBUG Processing 95/862 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,607 DEBUG Processing 978/1138 atomic regions from SNP 293170 to 293770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,670 DEBUG Processing 96/862 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,862 DEBUG Processing 979/1138 atomic regions from SNP 293470 to 294070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,883 DEBUG Processing 97/862 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,092 DEBUG Processing 98/862 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,115 DEBUG Processing 980/1138 atomic regions from SNP 293770 to 294370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,309 DEBUG Processing 99/862 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,368 DEBUG Processing 981/1138 atomic regions from SNP 294070 to 294670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,526 DEBUG Processing 100/862 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,621 DEBUG Processing 982/1138 atomic regions from SNP 294370 to 294970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,749 DEBUG Processing 101/862 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,881 DEBUG Processing 983/1138 atomic regions from SNP 294670 to 295270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,963 DEBUG Processing 102/862 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,135 DEBUG Processing 984/1138 atomic regions from SNP 294970 to 295570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,183 DEBUG Processing 103/862 atomic regions from SNP 30702 to 31303 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,384 DEBUG Processing 985/1138 atomic regions from SNP 295270 to 295870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,399 DEBUG Processing 104/862 atomic regions from SNP 31003 to 31604 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,617 DEBUG Processing 105/862 atomic regions from SNP 31304 to 31905 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,654 DEBUG Processing 986/1138 atomic regions from SNP 295570 to 296170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,834 DEBUG Processing 106/862 atomic regions from SNP 31605 to 32206 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,919 DEBUG Processing 987/1138 atomic regions from SNP 295870 to 296470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,042 DEBUG Processing 107/862 atomic regions from SNP 31906 to 32507 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,177 DEBUG Processing 988/1138 atomic regions from SNP 296170 to 296770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,252 DEBUG Processing 108/862 atomic regions from SNP 32207 to 32808 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,443 DEBUG Processing 989/1138 atomic regions from SNP 296470 to 297070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,469 DEBUG Processing 109/862 atomic regions from SNP 32508 to 33109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,686 DEBUG Processing 110/862 atomic regions from SNP 32809 to 33410 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,708 DEBUG Processing 990/1138 atomic regions from SNP 296770 to 297370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,894 DEBUG Processing 111/862 atomic regions from SNP 33110 to 33711 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,989 DEBUG Processing 991/1138 atomic regions from SNP 297070 to 297670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,102 DEBUG Processing 112/862 atomic regions from SNP 33411 to 34012 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,270 DEBUG Processing 992/1138 atomic regions from SNP 297370 to 297970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,316 DEBUG Processing 113/862 atomic regions from SNP 33712 to 34313 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,527 DEBUG Processing 114/862 atomic regions from SNP 34013 to 34614 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,554 DEBUG Processing 993/1138 atomic regions from SNP 297670 to 298270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,737 DEBUG Processing 115/862 atomic regions from SNP 34314 to 34915 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,837 DEBUG Processing 994/1138 atomic regions from SNP 297970 to 298570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,942 DEBUG Processing 116/862 atomic regions from SNP 34615 to 35216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,101 DEBUG Processing 995/1138 atomic regions from SNP 298270 to 298870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,146 DEBUG Processing 117/862 atomic regions from SNP 34916 to 35517 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,239 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:47:54,349 DEBUG Processing 996/1138 atomic regions from SNP 298570 to 299170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,354 DEBUG Processing 118/862 atomic regions from SNP 35217 to 35818 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,565 DEBUG Processing 119/862 atomic regions from SNP 35518 to 36119 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,603 DEBUG Processing 997/1138 atomic regions from SNP 298870 to 299470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,772 DEBUG Processing 120/862 atomic regions from SNP 35819 to 36420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,880 DEBUG Processing 998/1138 atomic regions from SNP 299170 to 299770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,975 DEBUG Processing 121/862 atomic regions from SNP 36120 to 36721 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,163 DEBUG Processing 999/1138 atomic regions from SNP 299470 to 300070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,180 DEBUG Processing 122/862 atomic regions from SNP 36421 to 37022 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,388 DEBUG Processing 123/862 atomic regions from SNP 36722 to 37323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,440 DEBUG Processing 1000/1138 atomic regions from SNP 299770 to 300370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,597 DEBUG Processing 124/862 atomic regions from SNP 37023 to 37623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,692 DEBUG Processing 1001/1138 atomic regions from SNP 300070 to 300670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,801 DEBUG Processing 125/862 atomic regions from SNP 37323 to 37923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,948 DEBUG Processing 1002/1138 atomic regions from SNP 300370 to 300970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,007 DEBUG Processing 126/862 atomic regions from SNP 37623 to 38223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,200 DEBUG Processing 1003/1138 atomic regions from SNP 300670 to 301270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,217 DEBUG Processing 127/862 atomic regions from SNP 37923 to 38523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,428 DEBUG Processing 128/862 atomic regions from SNP 38223 to 38823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,452 DEBUG Processing 1004/1138 atomic regions from SNP 300970 to 301570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,637 DEBUG Processing 129/862 atomic regions from SNP 38523 to 39123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,707 DEBUG Processing 1005/1138 atomic regions from SNP 301270 to 301870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,851 DEBUG Processing 130/862 atomic regions from SNP 38823 to 39423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,960 DEBUG Processing 1006/1138 atomic regions from SNP 301570 to 302170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,059 DEBUG Processing 131/862 atomic regions from SNP 39123 to 39723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,212 DEBUG Processing 1007/1138 atomic regions from SNP 301870 to 302470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,278 DEBUG Processing 132/862 atomic regions from SNP 39423 to 40023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,465 DEBUG Processing 1008/1138 atomic regions from SNP 302170 to 302770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,498 DEBUG Processing 133/862 atomic regions from SNP 39723 to 40323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,711 DEBUG Processing 134/862 atomic regions from SNP 40023 to 40623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,718 DEBUG Processing 1009/1138 atomic regions from SNP 302470 to 303070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,929 DEBUG Processing 135/862 atomic regions from SNP 40323 to 40923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,971 DEBUG Processing 1010/1138 atomic regions from SNP 302770 to 303370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,145 DEBUG Processing 136/862 atomic regions from SNP 40623 to 41223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,222 DEBUG Processing 1011/1138 atomic regions from SNP 303070 to 303670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,362 DEBUG Processing 137/862 atomic regions from SNP 40923 to 41523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,375 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:47:58,377 DEBUG chr7: Signal quantile: 0.989. signal threshold: 14. Best RMSEA: 0.013 2025-01-31 09:47:58,486 DEBUG Processing 1012/1138 atomic regions from SNP 303370 to 303970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,581 DEBUG Processing 138/862 atomic regions from SNP 41223 to 41823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,735 DEBUG Processing 1013/1138 atomic regions from SNP 303670 to 304270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,796 DEBUG Processing 139/862 atomic regions from SNP 41523 to 42123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,983 DEBUG Processing 1014/1138 atomic regions from SNP 303970 to 304570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,011 DEBUG Processing 140/862 atomic regions from SNP 41823 to 42423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,224 DEBUG Processing 141/862 atomic regions from SNP 42123 to 42723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,232 DEBUG Processing 1015/1138 atomic regions from SNP 304270 to 304870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,436 DEBUG Processing 142/862 atomic regions from SNP 42423 to 43023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,487 DEBUG Processing 1016/1138 atomic regions from SNP 304570 to 305170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,656 DEBUG Processing 143/862 atomic regions from SNP 42723 to 43323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,743 DEBUG Processing 1017/1138 atomic regions from SNP 304870 to 305470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,879 DEBUG Processing 144/862 atomic regions from SNP 43023 to 43623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,002 DEBUG Processing 1018/1138 atomic regions from SNP 305170 to 305770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,099 DEBUG Processing 145/862 atomic regions from SNP 43323 to 43923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,253 DEBUG Processing 1019/1138 atomic regions from SNP 305470 to 306070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,336 DEBUG Processing 146/862 atomic regions from SNP 43623 to 44223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,506 DEBUG Processing 1020/1138 atomic regions from SNP 305770 to 306370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,560 DEBUG Processing 147/862 atomic regions from SNP 43923 to 44523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,703 DEBUG chr7 total SNP count: 233859 2025-01-31 09:48:00,703 DEBUG chr7 length: 145441459 2025-01-31 09:48:00,703 DEBUG ----------------------------------------- 2025-01-31 09:48:00,703 INFO Processing SNPs in chr7 2025-01-31 09:48:00,757 DEBUG Processing 1021/1138 atomic regions from SNP 306070 to 306670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,782 DEBUG Processing 148/862 atomic regions from SNP 44223 to 44823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,006 DEBUG Processing 149/862 atomic regions from SNP 44523 to 45123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,006 DEBUG Processing 1022/1138 atomic regions from SNP 306370 to 306970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,055 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 21108), (21108, 21134), (21134, 233859)] 2025-01-31 09:48:01,158 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:01,226 DEBUG Processing 150/862 atomic regions from SNP 44823 to 45423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,256 DEBUG Processing 1023/1138 atomic regions from SNP 306670 to 307270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,465 DEBUG Processing 151/862 atomic regions from SNP 45123 to 45723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,504 DEBUG Processing 1024/1138 atomic regions from SNP 306970 to 307570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,701 DEBUG Processing 152/862 atomic regions from SNP 45423 to 46023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,756 DEBUG Processing 1025/1138 atomic regions from SNP 307270 to 307870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,932 DEBUG Processing 153/862 atomic regions from SNP 45723 to 46323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,019 DEBUG Processing 1026/1138 atomic regions from SNP 307570 to 308170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,172 DEBUG Processing 154/862 atomic regions from SNP 46023 to 46623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,279 DEBUG Processing 1027/1138 atomic regions from SNP 307870 to 308470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,402 DEBUG Processing 155/862 atomic regions from SNP 46323 to 46923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,523 DEBUG Processing 1028/1138 atomic regions from SNP 308170 to 308770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,634 DEBUG Processing 156/862 atomic regions from SNP 46623 to 47223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,768 DEBUG Processing 1029/1138 atomic regions from SNP 308470 to 309070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,880 DEBUG Processing 157/862 atomic regions from SNP 46923 to 47523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,019 DEBUG Processing 1030/1138 atomic regions from SNP 308770 to 309370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,125 DEBUG Processing 158/862 atomic regions from SNP 47223 to 47823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,268 DEBUG Processing 1031/1138 atomic regions from SNP 309070 to 309670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,356 DEBUG Processing 159/862 atomic regions from SNP 47523 to 48123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,515 DEBUG Processing 1032/1138 atomic regions from SNP 309370 to 309970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,585 DEBUG Processing 160/862 atomic regions from SNP 47823 to 48423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,763 DEBUG Processing 1033/1138 atomic regions from SNP 309670 to 310270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,800 DEBUG Processing 161/862 atomic regions from SNP 48123 to 48723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,850 DEBUG Segmenting atomic regions: 2025-01-31 09:48:03,950 DEBUG Processing 1/69 atomic regions from SNP 0 to 602 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:04,027 DEBUG Processing 162/862 atomic regions from SNP 48423 to 49023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,034 DEBUG Processing 1034/1138 atomic regions from SNP 309970 to 310570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,143 DEBUG Processing 2/69 atomic regions from SNP 302 to 904 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:04,270 DEBUG Processing 163/862 atomic regions from SNP 48723 to 49323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,312 DEBUG Processing 1035/1138 atomic regions from SNP 310270 to 310870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,340 DEBUG Processing 3/69 atomic regions from SNP 604 to 1206 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:04,490 DEBUG Processing 164/862 atomic regions from SNP 49023 to 49623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,567 DEBUG Processing 4/69 atomic regions from SNP 906 to 1508 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:04,576 DEBUG Processing 1036/1138 atomic regions from SNP 310570 to 311170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,720 DEBUG Processing 165/862 atomic regions from SNP 49323 to 49923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,777 DEBUG Processing 5/69 atomic regions from SNP 1208 to 1810 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:04,829 DEBUG Processing 1037/1138 atomic regions from SNP 310870 to 311470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,955 DEBUG Processing 166/862 atomic regions from SNP 49623 to 50223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,991 DEBUG Processing 6/69 atomic regions from SNP 1510 to 2112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:05,079 DEBUG Processing 1038/1138 atomic regions from SNP 311170 to 311770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,173 DEBUG Processing 167/862 atomic regions from SNP 49923 to 50523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,198 DEBUG Processing 7/69 atomic regions from SNP 1812 to 2414 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:05,329 DEBUG Processing 1039/1138 atomic regions from SNP 311470 to 312070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,386 DEBUG Processing 168/862 atomic regions from SNP 50223 to 50823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,425 DEBUG Processing 8/69 atomic regions from SNP 2114 to 2716 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:05,583 DEBUG Processing 1040/1138 atomic regions from SNP 311770 to 312370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,602 DEBUG Processing 169/862 atomic regions from SNP 50523 to 51123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,653 DEBUG Processing 9/69 atomic regions from SNP 2416 to 3018 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:05,818 DEBUG Processing 170/862 atomic regions from SNP 50823 to 51423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,834 DEBUG Processing 1041/1138 atomic regions from SNP 312070 to 312670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,885 DEBUG Processing 10/69 atomic regions from SNP 2718 to 3320 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:06,047 DEBUG Processing 171/862 atomic regions from SNP 51123 to 51723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,110 DEBUG Processing 1042/1138 atomic regions from SNP 312370 to 312970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,116 DEBUG Processing 11/69 atomic regions from SNP 3020 to 3622 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:06,268 DEBUG Processing 172/862 atomic regions from SNP 51423 to 52023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,319 DEBUG Processing 12/69 atomic regions from SNP 3322 to 3924 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:06,395 DEBUG Processing 1043/1138 atomic regions from SNP 312670 to 313270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,485 DEBUG Processing 173/862 atomic regions from SNP 51723 to 52323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,516 DEBUG Processing 13/69 atomic regions from SNP 3624 to 4226 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:06,677 DEBUG Processing 1044/1138 atomic regions from SNP 312970 to 313570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,703 DEBUG Processing 174/862 atomic regions from SNP 52023 to 52623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,716 DEBUG Processing 14/69 atomic regions from SNP 3926 to 4528 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:06,924 DEBUG Processing 15/69 atomic regions from SNP 4228 to 4830 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:06,932 DEBUG Processing 175/862 atomic regions from SNP 52323 to 52923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,950 DEBUG Processing 1045/1138 atomic regions from SNP 313270 to 313870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,150 DEBUG Processing 16/69 atomic regions from SNP 4530 to 5132 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:07,164 DEBUG Processing 176/862 atomic regions from SNP 52623 to 53223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,229 DEBUG Processing 1046/1138 atomic regions from SNP 313570 to 314170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,380 DEBUG Processing 17/69 atomic regions from SNP 4832 to 5434 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:07,381 DEBUG Processing 177/862 atomic regions from SNP 52923 to 53523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,512 DEBUG Processing 1047/1138 atomic regions from SNP 313870 to 314470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,596 DEBUG Processing 178/862 atomic regions from SNP 53223 to 53823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,602 DEBUG Processing 18/69 atomic regions from SNP 5134 to 5736 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:07,790 DEBUG Processing 1048/1138 atomic regions from SNP 314170 to 314770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,809 DEBUG Processing 19/69 atomic regions from SNP 5436 to 6038 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:07,816 DEBUG Processing 179/862 atomic regions from SNP 53523 to 54123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,993 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:48:07,995 DEBUG chr10: Signal quantile: 0.991. signal threshold: 12. Best RMSEA: 0.017 2025-01-31 09:48:08,036 DEBUG Processing 180/862 atomic regions from SNP 53823 to 54423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,037 DEBUG Processing 20/69 atomic regions from SNP 5738 to 6340 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:08,070 DEBUG Processing 1049/1138 atomic regions from SNP 314470 to 315070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,239 DEBUG Processing 21/69 atomic regions from SNP 6040 to 6642 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:08,263 DEBUG Processing 181/862 atomic regions from SNP 54123 to 54723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,361 DEBUG Processing 1050/1138 atomic regions from SNP 314770 to 315370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,440 DEBUG Processing 22/69 atomic regions from SNP 6342 to 6944 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:08,480 DEBUG Processing 182/862 atomic regions from SNP 54423 to 55023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,641 DEBUG Processing 23/69 atomic regions from SNP 6644 to 7246 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:08,650 DEBUG Processing 1051/1138 atomic regions from SNP 315070 to 315670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,708 DEBUG Processing 183/862 atomic regions from SNP 54723 to 55323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,845 DEBUG Processing 24/69 atomic regions from SNP 6946 to 7548 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:08,930 DEBUG Processing 184/862 atomic regions from SNP 55023 to 55623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,940 DEBUG Processing 1052/1138 atomic regions from SNP 315370 to 315970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,044 DEBUG Processing 25/69 atomic regions from SNP 7248 to 7850 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:09,149 DEBUG Processing 185/862 atomic regions from SNP 55323 to 55923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,232 DEBUG Processing 1053/1138 atomic regions from SNP 315670 to 316270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,240 DEBUG Processing 26/69 atomic regions from SNP 7550 to 8152 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:09,387 DEBUG Processing 186/862 atomic regions from SNP 55623 to 56223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,441 DEBUG Processing 27/69 atomic regions from SNP 7852 to 8454 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:09,508 DEBUG Processing 1054/1138 atomic regions from SNP 315970 to 316570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,613 DEBUG Processing 187/862 atomic regions from SNP 55923 to 56523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,640 DEBUG Processing 28/69 atomic regions from SNP 8154 to 8756 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:09,764 DEBUG Processing 1055/1138 atomic regions from SNP 316270 to 316870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,838 DEBUG Processing 29/69 atomic regions from SNP 8456 to 9058 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:09,850 DEBUG Processing 188/862 atomic regions from SNP 56223 to 56823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,030 DEBUG Processing 1056/1138 atomic regions from SNP 316570 to 317170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,040 DEBUG Processing 30/69 atomic regions from SNP 8758 to 9360 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:10,086 DEBUG Processing 189/862 atomic regions from SNP 56523 to 57123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,123 DEBUG chr10 total SNP count: 225958 2025-01-31 09:48:10,124 DEBUG chr10 length: 130694993 2025-01-31 09:48:10,124 DEBUG ----------------------------------------- 2025-01-31 09:48:10,124 INFO Processing SNPs in chr10 2025-01-31 09:48:10,245 DEBUG Processing 31/69 atomic regions from SNP 9060 to 9662 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:10,303 DEBUG Processing 190/862 atomic regions from SNP 56823 to 57423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,308 DEBUG Processing 1057/1138 atomic regions from SNP 316870 to 317470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,339 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 225958)] 2025-01-31 09:48:10,442 DEBUG Processing 32/69 atomic regions from SNP 9362 to 9964 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:10,486 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:10,517 DEBUG Processing 191/862 atomic regions from SNP 57123 to 57723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,581 DEBUG Processing 1058/1138 atomic regions from SNP 317170 to 317770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,592 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:48:10,637 DEBUG Processing 33/69 atomic regions from SNP 9664 to 10266 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:10,732 DEBUG Processing 192/862 atomic regions from SNP 57423 to 58023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,839 DEBUG Processing 34/69 atomic regions from SNP 9966 to 10568 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:10,862 DEBUG Processing 1059/1138 atomic regions from SNP 317470 to 318070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,943 DEBUG Processing 193/862 atomic regions from SNP 57723 to 58323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,038 DEBUG Processing 35/69 atomic regions from SNP 10268 to 10870 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:11,135 DEBUG Processing 1060/1138 atomic regions from SNP 317770 to 318370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,152 DEBUG Processing 194/862 atomic regions from SNP 58023 to 58623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,252 DEBUG Processing 36/69 atomic regions from SNP 10570 to 11172 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:11,364 DEBUG Processing 195/862 atomic regions from SNP 58323 to 58923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,399 DEBUG Processing 1061/1138 atomic regions from SNP 318070 to 318670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,482 DEBUG Processing 37/69 atomic regions from SNP 10872 to 11474 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:11,581 DEBUG Processing 196/862 atomic regions from SNP 58623 to 59223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,652 DEBUG Processing 1062/1138 atomic regions from SNP 318370 to 318970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,685 DEBUG Processing 38/69 atomic regions from SNP 11174 to 11776 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:11,792 DEBUG Processing 197/862 atomic regions from SNP 58923 to 59523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,881 DEBUG Processing 39/69 atomic regions from SNP 11476 to 12077 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:11,910 DEBUG Processing 1063/1138 atomic regions from SNP 318670 to 319270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,999 DEBUG Processing 198/862 atomic regions from SNP 59223 to 59823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,076 DEBUG Processing 40/69 atomic regions from SNP 11777 to 12378 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:12,166 DEBUG Processing 1064/1138 atomic regions from SNP 318970 to 319570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,206 DEBUG Processing 199/862 atomic regions from SNP 59523 to 60123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,268 DEBUG Processing 41/69 atomic regions from SNP 12078 to 12679 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:12,414 DEBUG Processing 200/862 atomic regions from SNP 59823 to 60423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,438 DEBUG Processing 1065/1138 atomic regions from SNP 319270 to 319870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,461 DEBUG Processing 42/69 atomic regions from SNP 12379 to 12980 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:12,633 DEBUG Processing 201/862 atomic regions from SNP 60123 to 60723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,659 DEBUG Processing 43/69 atomic regions from SNP 12680 to 13281 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:12,719 DEBUG Processing 1066/1138 atomic regions from SNP 319570 to 320170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,848 DEBUG Processing 202/862 atomic regions from SNP 60423 to 61023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,857 DEBUG Processing 44/69 atomic regions from SNP 12981 to 13582 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:12,973 DEBUG Processing 1067/1138 atomic regions from SNP 319870 to 320470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,054 DEBUG Processing 45/69 atomic regions from SNP 13282 to 13883 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:13,066 DEBUG Processing 203/862 atomic regions from SNP 60723 to 61323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,225 DEBUG Processing 1068/1138 atomic regions from SNP 320170 to 320770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,251 DEBUG Processing 46/69 atomic regions from SNP 13583 to 14184 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:13,286 DEBUG Processing 204/862 atomic regions from SNP 61023 to 61623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,448 DEBUG Processing 47/69 atomic regions from SNP 13884 to 14485 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:13,476 DEBUG Processing 1069/1138 atomic regions from SNP 320470 to 321070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,501 DEBUG Processing 205/862 atomic regions from SNP 61323 to 61923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,663 DEBUG Processing 48/69 atomic regions from SNP 14185 to 14786 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:13,717 DEBUG Processing 206/862 atomic regions from SNP 61623 to 62223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,730 DEBUG Processing 1070/1138 atomic regions from SNP 320770 to 321370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,896 DEBUG Processing 49/69 atomic regions from SNP 14486 to 15087 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:13,954 DEBUG Processing 207/862 atomic regions from SNP 61923 to 62523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,982 DEBUG Processing 1071/1138 atomic regions from SNP 321070 to 321670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,121 DEBUG Processing 50/69 atomic regions from SNP 14787 to 15388 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:14,198 DEBUG Processing 208/862 atomic regions from SNP 62223 to 62823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,234 DEBUG Processing 1072/1138 atomic regions from SNP 321370 to 321970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,346 DEBUG Processing 51/69 atomic regions from SNP 15088 to 15689 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:14,432 DEBUG Processing 209/862 atomic regions from SNP 62523 to 63123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,491 DEBUG Processing 1073/1138 atomic regions from SNP 321670 to 322270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,566 DEBUG Processing 52/69 atomic regions from SNP 15389 to 15990 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:14,674 DEBUG Processing 210/862 atomic regions from SNP 62823 to 63423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,769 DEBUG Processing 53/69 atomic regions from SNP 15690 to 16291 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:14,770 DEBUG Processing 1074/1138 atomic regions from SNP 321970 to 322570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,911 DEBUG Processing 211/862 atomic regions from SNP 63123 to 63723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,993 DEBUG Processing 54/69 atomic regions from SNP 15991 to 16592 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:15,049 DEBUG Processing 1075/1138 atomic regions from SNP 322270 to 322870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,128 DEBUG Processing 212/862 atomic regions from SNP 63423 to 64023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,217 DEBUG Processing 55/69 atomic regions from SNP 16292 to 16893 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:15,313 DEBUG Processing 1076/1138 atomic regions from SNP 322570 to 323170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,353 DEBUG Processing 213/862 atomic regions from SNP 63723 to 64323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,423 DEBUG Processing 56/69 atomic regions from SNP 16593 to 17194 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:15,585 DEBUG Processing 1077/1138 atomic regions from SNP 322870 to 323470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,588 DEBUG Processing 214/862 atomic regions from SNP 64023 to 64623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,619 DEBUG Processing 57/69 atomic regions from SNP 16894 to 17495 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:15,814 DEBUG Processing 215/862 atomic regions from SNP 64323 to 64923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,818 DEBUG Processing 58/69 atomic regions from SNP 17195 to 17796 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:15,869 DEBUG Processing 1078/1138 atomic regions from SNP 323170 to 323770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,019 DEBUG Processing 59/69 atomic regions from SNP 17496 to 18097 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:16,029 DEBUG Processing 216/862 atomic regions from SNP 64623 to 65223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,155 DEBUG Processing 1079/1138 atomic regions from SNP 323470 to 324070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,218 DEBUG Processing 60/69 atomic regions from SNP 17797 to 18398 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:16,244 DEBUG Processing 217/862 atomic regions from SNP 64923 to 65523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,420 DEBUG Processing 61/69 atomic regions from SNP 18098 to 18699 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:16,424 DEBUG Processing 1080/1138 atomic regions from SNP 323770 to 324370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,463 DEBUG Processing 218/862 atomic regions from SNP 65223 to 65823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,618 DEBUG Processing 62/69 atomic regions from SNP 18399 to 19000 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:16,680 DEBUG Processing 219/862 atomic regions from SNP 65523 to 66123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,684 DEBUG Processing 1081/1138 atomic regions from SNP 324070 to 324670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,813 DEBUG Processing 63/69 atomic regions from SNP 18700 to 19301 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:16,890 DEBUG Processing 220/862 atomic regions from SNP 65823 to 66423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,931 DEBUG Processing 1082/1138 atomic regions from SNP 324370 to 324970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,031 DEBUG Processing 64/69 atomic regions from SNP 19001 to 19602 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:17,099 DEBUG Processing 221/862 atomic regions from SNP 66123 to 66723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,178 DEBUG Processing 1083/1138 atomic regions from SNP 324670 to 325270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,265 DEBUG Processing 65/69 atomic regions from SNP 19302 to 19903 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:17,309 DEBUG Processing 222/862 atomic regions from SNP 66423 to 67023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,425 DEBUG Processing 1084/1138 atomic regions from SNP 324970 to 325570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,500 DEBUG Processing 66/69 atomic regions from SNP 19603 to 20204 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:17,522 DEBUG Processing 223/862 atomic regions from SNP 66723 to 67323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,672 DEBUG Processing 1085/1138 atomic regions from SNP 325270 to 325870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,730 DEBUG Processing 67/69 atomic regions from SNP 19904 to 20505 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:17,738 DEBUG Processing 224/862 atomic regions from SNP 67023 to 67623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,926 DEBUG Processing 1086/1138 atomic regions from SNP 325570 to 326170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,956 DEBUG Processing 225/862 atomic regions from SNP 67323 to 67923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,965 DEBUG Processing 68/69 atomic regions from SNP 20205 to 20806 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:18,167 DEBUG Processing 226/862 atomic regions from SNP 67623 to 68223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,173 DEBUG Processing 1087/1138 atomic regions from SNP 325870 to 326470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,193 DEBUG Processing 69/69 atomic regions from SNP 20506 to 21107 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:18,290 DEBUG Unique SNPs positions in subchromosome 1: 21108 2025-01-31 09:48:18,296 DEBUG Subchromosome time: 324.70112042687833, subchromosome SNPs: 308777 2025-01-31 09:48:18,299 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:18,349 DEBUG Subchromosome time: 17.1907988935709, subchromosome SNPs: 21108 2025-01-31 09:48:18,376 DEBUG Processing 227/862 atomic regions from SNP 67923 to 68523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,402 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:18,421 DEBUG Processing 1088/1138 atomic regions from SNP 326170 to 326770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,581 DEBUG Processing 228/862 atomic regions from SNP 68223 to 68823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,667 DEBUG Processing 1089/1138 atomic regions from SNP 326470 to 327070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,789 DEBUG Processing 229/862 atomic regions from SNP 68523 to 69123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,913 DEBUG Processing 1090/1138 atomic regions from SNP 326770 to 327370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,002 DEBUG Processing 230/862 atomic regions from SNP 68823 to 69423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,159 DEBUG Processing 1091/1138 atomic regions from SNP 327070 to 327670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,213 DEBUG Processing 231/862 atomic regions from SNP 69123 to 69723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,281 DEBUG Segmenting atomic regions: 2025-01-31 09:48:19,406 DEBUG Processing 1092/1138 atomic regions from SNP 327370 to 327970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,413 DEBUG Processing 1/25 atomic regions from SNP 0 to 604 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:19,424 DEBUG Processing 232/862 atomic regions from SNP 69423 to 70023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,634 DEBUG Processing 233/862 atomic regions from SNP 69723 to 70323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,652 DEBUG Processing 2/25 atomic regions from SNP 304 to 908 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:19,659 DEBUG Processing 1093/1138 atomic regions from SNP 327670 to 328270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,844 DEBUG Processing 234/862 atomic regions from SNP 70023 to 70623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,887 DEBUG Processing 3/25 atomic regions from SNP 608 to 1211 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:19,908 DEBUG Processing 1094/1138 atomic regions from SNP 327970 to 328570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,055 DEBUG Processing 235/862 atomic regions from SNP 70323 to 70923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,129 DEBUG Processing 4/25 atomic regions from SNP 911 to 1514 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:20,157 DEBUG Processing 1095/1138 atomic regions from SNP 328270 to 328870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,263 DEBUG Processing 236/862 atomic regions from SNP 70623 to 71223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,380 DEBUG Processing 5/25 atomic regions from SNP 1214 to 1817 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:20,405 DEBUG Processing 1096/1138 atomic regions from SNP 328570 to 329170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,473 DEBUG Processing 237/862 atomic regions from SNP 70923 to 71523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,618 DEBUG Processing 6/25 atomic regions from SNP 1517 to 2120 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:20,653 DEBUG Processing 1097/1138 atomic regions from SNP 328870 to 329470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,681 DEBUG Processing 238/862 atomic regions from SNP 71223 to 71823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,850 DEBUG Processing 7/25 atomic regions from SNP 1820 to 2423 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:20,890 DEBUG Processing 239/862 atomic regions from SNP 71523 to 72123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,901 DEBUG Processing 1098/1138 atomic regions from SNP 329170 to 329770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,082 DEBUG Processing 8/25 atomic regions from SNP 2123 to 2726 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:21,100 DEBUG Processing 240/862 atomic regions from SNP 71823 to 72423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,150 DEBUG Processing 1099/1138 atomic regions from SNP 329470 to 330070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,311 DEBUG Processing 241/862 atomic regions from SNP 72123 to 72723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,314 DEBUG Processing 9/25 atomic regions from SNP 2426 to 3029 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:21,401 DEBUG Processing 1100/1138 atomic regions from SNP 329770 to 330370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,522 DEBUG Processing 242/862 atomic regions from SNP 72423 to 73023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,549 DEBUG Processing 10/25 atomic regions from SNP 2729 to 3332 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:21,651 DEBUG Processing 1101/1138 atomic regions from SNP 330070 to 330670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,730 DEBUG Processing 243/862 atomic regions from SNP 72723 to 73323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,782 DEBUG Processing 11/25 atomic regions from SNP 3032 to 3635 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:21,899 DEBUG Processing 1102/1138 atomic regions from SNP 330370 to 330970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,939 DEBUG Processing 244/862 atomic regions from SNP 73023 to 73623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,022 DEBUG Processing 12/25 atomic regions from SNP 3335 to 3938 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:22,146 DEBUG Processing 245/862 atomic regions from SNP 73323 to 73923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,148 DEBUG Processing 1103/1138 atomic regions from SNP 330670 to 331270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,271 DEBUG Processing 13/25 atomic regions from SNP 3638 to 4241 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:22,354 DEBUG Processing 246/862 atomic regions from SNP 73623 to 74223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,398 DEBUG Processing 1104/1138 atomic regions from SNP 330970 to 331570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,539 DEBUG Processing 14/25 atomic regions from SNP 3941 to 4544 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:22,562 DEBUG Processing 247/862 atomic regions from SNP 73923 to 74523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,661 DEBUG Processing 1105/1138 atomic regions from SNP 331270 to 331870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,767 DEBUG Processing 248/862 atomic regions from SNP 74223 to 74823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,808 DEBUG Processing 15/25 atomic regions from SNP 4244 to 4847 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:22,933 DEBUG Processing 1106/1138 atomic regions from SNP 331570 to 332170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,974 DEBUG Processing 249/862 atomic regions from SNP 74523 to 75123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,075 DEBUG Processing 16/25 atomic regions from SNP 4547 to 5150 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:23,182 DEBUG Processing 250/862 atomic regions from SNP 74823 to 75423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,198 DEBUG Processing 1107/1138 atomic regions from SNP 331870 to 332470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,340 DEBUG Processing 17/25 atomic regions from SNP 4850 to 5453 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:23,394 DEBUG Processing 251/862 atomic regions from SNP 75123 to 75723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,453 DEBUG Processing 1108/1138 atomic regions from SNP 332170 to 332770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,607 DEBUG Processing 252/862 atomic regions from SNP 75423 to 76023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,607 DEBUG Processing 18/25 atomic regions from SNP 5153 to 5756 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:23,703 DEBUG Processing 1109/1138 atomic regions from SNP 332470 to 333070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,818 DEBUG Processing 253/862 atomic regions from SNP 75723 to 76323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,875 DEBUG Processing 19/25 atomic regions from SNP 5456 to 6059 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:23,954 DEBUG Processing 1110/1138 atomic regions from SNP 332770 to 333370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,027 DEBUG Processing 254/862 atomic regions from SNP 76023 to 76623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,138 DEBUG Processing 20/25 atomic regions from SNP 5759 to 6362 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:24,206 DEBUG Processing 1111/1138 atomic regions from SNP 333070 to 333670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,235 DEBUG Processing 255/862 atomic regions from SNP 76323 to 76923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,294 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:48:24,295 DEBUG chr8: Signal quantile: 0.992. signal threshold: 15. Best RMSEA: 0.016 2025-01-31 09:48:24,403 DEBUG Processing 21/25 atomic regions from SNP 6062 to 6665 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:24,449 DEBUG Processing 256/862 atomic regions from SNP 76623 to 77223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,474 DEBUG Processing 1112/1138 atomic regions from SNP 333370 to 333970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,658 DEBUG Processing 257/862 atomic regions from SNP 76923 to 77523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,669 DEBUG Processing 22/25 atomic regions from SNP 6365 to 6968 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:24,754 DEBUG Processing 1113/1138 atomic regions from SNP 333670 to 334270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,869 DEBUG Processing 258/862 atomic regions from SNP 77223 to 77823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,934 DEBUG Processing 23/25 atomic regions from SNP 6668 to 7271 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:25,034 DEBUG Processing 1114/1138 atomic regions from SNP 333970 to 334570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,092 DEBUG Processing 259/862 atomic regions from SNP 77523 to 78123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,203 DEBUG Processing 24/25 atomic regions from SNP 6971 to 7574 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:25,307 DEBUG Processing 260/862 atomic regions from SNP 77823 to 78423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,315 DEBUG Processing 1115/1138 atomic regions from SNP 334270 to 334870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,470 DEBUG Processing 25/25 atomic regions from SNP 7274 to 7877 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:25,550 DEBUG Processing 261/862 atomic regions from SNP 78123 to 78723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,597 DEBUG Unique SNPs positions in subchromosome 2: 7878 2025-01-31 09:48:25,598 DEBUG Processing 1116/1138 atomic regions from SNP 334570 to 335170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,607 DEBUG Subchromosome time: 7.307364834472537, subchromosome SNPs: 7878 2025-01-31 09:48:25,607 DEBUG Estimated BADs: [1.51, 0.50, 1.51, 0.50, 9.04, 1.51, 4.52, 3.01, 0.50, 3.01, 0.38, 0.75, 1.51, 0.75, 4.52, 0.30, 1.51, 4.52, 1.51, 0.30, 1.51, 0.75, 3.01, 0.38, 1.51, 3.01, 1.51, 0.75, 1.51, 3.01, 1.51, 3.01, 4.52, 1.51, 1.51, 6.03] SNP counts: [8221, 2412, 11422, 4410, 100, 11843, 15163, 6323, 1153, 4380, 6443, 43803, 24571, 5987, 1241, 6882, 1987, 2837, 5093, 9284, 12906, 18615, 8368, 1527, 6073, 7638, 10891, 11877, 14677, 11845, 8733, 6884, 2083, 13105, 3706, 4172] SNP IDs counts: [8221, 2412, 11422, 4410, 100, 11843, 15163, 6323, 1153, 4380, 6443, 43803, 24571, 5987, 1241, 6882, 1987, 2837, 5093, 9284, 12906, 18615, 8368, 1527, 6073, 7638, 10891, 11877, 14677, 11845, 8733, 6884, 2083, 13105, 3706, 4172] Critical gap: 724583bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.56Mbp, 9.00Mbp, 15.44Mbp, 18.02Mbp, 18.07Mbp, 24.92Mbp, 32.93Mbp, 36.24Mbp, 36.98Mbp, 39.38Mbp, 43.11Mbp, 67.75Mbp, 81.01Mbp, 84.65Mbp, 85.32Mbp, 89.48Mbp, 90.84Mbp, 92.32Mbp, 95.05Mbp, 100.94Mbp, 107.98Mbp, 118.49Mbp, 123.00Mbp, 123.88Mbp, 127.20Mbp, 131.26Mbp, 137.23Mbp, 143.87Mbp, 152.29Mbp, 158.58Mbp, 163.32Mbp, 166.98Mbp, 168.09Mbp, 175.18Mbp[1.52Mbp], 179.79Mbp, 182.11Mbp] 2025-01-31 09:48:25,607 DEBUG chr2 time: 7.308038705959916 s 2025-01-31 09:48:25,793 DEBUG chr2: Fitting background model for 36 segments 2025-01-31 09:48:25,797 DEBUG Processing 262/862 atomic regions from SNP 78423 to 79023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,878 DEBUG Processing 1117/1138 atomic regions from SNP 334870 to 335470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,031 DEBUG Processing 263/862 atomic regions from SNP 78723 to 79323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,149 DEBUG Processing 1118/1138 atomic regions from SNP 335170 to 335770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,241 DEBUG Processing 264/862 atomic regions from SNP 79023 to 79623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,422 DEBUG chr8 total SNP count: 221994 2025-01-31 09:48:26,423 DEBUG chr8 length: 129401213 2025-01-31 09:48:26,423 DEBUG ----------------------------------------- 2025-01-31 09:48:26,423 INFO Processing SNPs in chr8 2025-01-31 09:48:26,437 DEBUG Processing 1119/1138 atomic regions from SNP 335470 to 336070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,449 DEBUG Processing 265/862 atomic regions from SNP 79323 to 79923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,635 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 221994)] 2025-01-31 09:48:26,661 DEBUG Processing 266/862 atomic regions from SNP 79623 to 80223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,721 DEBUG Processing 1120/1138 atomic regions from SNP 335770 to 336370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,781 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:26,874 DEBUG Processing 267/862 atomic regions from SNP 79923 to 80523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,987 DEBUG Processing 1121/1138 atomic regions from SNP 336070 to 336670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,086 DEBUG Processing 268/862 atomic regions from SNP 80223 to 80823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,242 DEBUG Processing 1122/1138 atomic regions from SNP 336370 to 336970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,309 DEBUG Processing 269/862 atomic regions from SNP 80523 to 81123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,495 DEBUG Processing 1123/1138 atomic regions from SNP 336670 to 337270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,552 DEBUG Processing 270/862 atomic regions from SNP 80823 to 81423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,762 DEBUG Processing 1124/1138 atomic regions from SNP 336970 to 337570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,782 DEBUG Processing 271/862 atomic regions from SNP 81123 to 81723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,992 DEBUG Processing 272/862 atomic regions from SNP 81423 to 82023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,016 DEBUG Processing 1125/1138 atomic regions from SNP 337270 to 337870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,205 DEBUG Processing 273/862 atomic regions from SNP 81723 to 82323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,291 DEBUG Processing 1126/1138 atomic regions from SNP 337570 to 338170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,428 DEBUG Processing 274/862 atomic regions from SNP 82023 to 82623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,555 DEBUG Processing 1127/1138 atomic regions from SNP 337870 to 338470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,642 DEBUG Processing 275/862 atomic regions from SNP 82323 to 82923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,811 DEBUG Processing 1128/1138 atomic regions from SNP 338170 to 338770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,856 DEBUG Processing 276/862 atomic regions from SNP 82623 to 83223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,066 DEBUG Processing 277/862 atomic regions from SNP 82923 to 83523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,080 DEBUG Processing 1129/1138 atomic regions from SNP 338470 to 339070 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,275 DEBUG Processing 278/862 atomic regions from SNP 83223 to 83823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,354 DEBUG Processing 1130/1138 atomic regions from SNP 338770 to 339370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,484 DEBUG Processing 279/862 atomic regions from SNP 83523 to 84123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,603 DEBUG Processing 1131/1138 atomic regions from SNP 339070 to 339670 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,696 DEBUG Processing 280/862 atomic regions from SNP 83823 to 84423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,851 DEBUG Processing 1132/1138 atomic regions from SNP 339370 to 339970 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,912 DEBUG Processing 281/862 atomic regions from SNP 84123 to 84723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,101 DEBUG Processing 1133/1138 atomic regions from SNP 339670 to 340270 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,127 DEBUG Processing 282/862 atomic regions from SNP 84423 to 85023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,347 DEBUG Processing 283/862 atomic regions from SNP 84723 to 85323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,351 DEBUG Processing 1134/1138 atomic regions from SNP 339970 to 340570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,584 DEBUG Processing 284/862 atomic regions from SNP 85023 to 85623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,617 DEBUG Processing 1135/1138 atomic regions from SNP 340270 to 340870 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,797 DEBUG Processing 285/862 atomic regions from SNP 85323 to 85923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,894 DEBUG Processing 1136/1138 atomic regions from SNP 340570 to 341170 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,008 DEBUG Processing 286/862 atomic regions from SNP 85623 to 86223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,161 DEBUG Processing 1137/1138 atomic regions from SNP 340870 to 341470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,219 DEBUG Processing 287/862 atomic regions from SNP 85923 to 86523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,424 DEBUG Processing 1138/1138 atomic regions from SNP 341170 to 341770 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,434 DEBUG Processing 288/862 atomic regions from SNP 86223 to 86823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,551 DEBUG Unique SNPs positions in subchromosome 1: 341771 2025-01-31 09:48:31,649 DEBUG Processing 289/862 atomic regions from SNP 86523 to 87123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,864 DEBUG Processing 290/862 atomic regions from SNP 86823 to 87423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,080 DEBUG Processing 291/862 atomic regions from SNP 87123 to 87723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,295 DEBUG Processing 292/862 atomic regions from SNP 87423 to 88023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,508 DEBUG Processing 293/862 atomic regions from SNP 87723 to 88323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,723 DEBUG Processing 294/862 atomic regions from SNP 88023 to 88623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,939 DEBUG Processing 295/862 atomic regions from SNP 88323 to 88923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,154 DEBUG Processing 296/862 atomic regions from SNP 88623 to 89223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,367 DEBUG Processing 297/862 atomic regions from SNP 88923 to 89523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,579 DEBUG Processing 298/862 atomic regions from SNP 89223 to 89823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,792 DEBUG Processing 299/862 atomic regions from SNP 89523 to 90123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,006 DEBUG Processing 300/862 atomic regions from SNP 89823 to 90423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,222 DEBUG Processing 301/862 atomic regions from SNP 90123 to 90723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,435 DEBUG Processing 302/862 atomic regions from SNP 90423 to 91023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,656 DEBUG Processing 303/862 atomic regions from SNP 90723 to 91323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,893 DEBUG Processing 304/862 atomic regions from SNP 91023 to 91623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,128 DEBUG Processing 305/862 atomic regions from SNP 91323 to 91923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,356 DEBUG Processing 306/862 atomic regions from SNP 91623 to 92223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,576 DEBUG Processing 307/862 atomic regions from SNP 91923 to 92523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,789 DEBUG Processing 308/862 atomic regions from SNP 92223 to 92823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,001 DEBUG Processing 309/862 atomic regions from SNP 92523 to 93123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,212 DEBUG Processing 310/862 atomic regions from SNP 92823 to 93423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,424 DEBUG Processing 311/862 atomic regions from SNP 93123 to 93723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,637 DEBUG Processing 312/862 atomic regions from SNP 93423 to 94023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,850 DEBUG Processing 313/862 atomic regions from SNP 93723 to 94323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,062 DEBUG Processing 314/862 atomic regions from SNP 94023 to 94623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,272 DEBUG Processing 315/862 atomic regions from SNP 94323 to 94923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,485 DEBUG Processing 316/862 atomic regions from SNP 94623 to 95223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,720 DEBUG Processing 317/862 atomic regions from SNP 94923 to 95523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,937 DEBUG Processing 318/862 atomic regions from SNP 95223 to 95823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,147 DEBUG Processing 319/862 atomic regions from SNP 95523 to 96123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,358 DEBUG Processing 320/862 atomic regions from SNP 95823 to 96423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,570 DEBUG Processing 321/862 atomic regions from SNP 96123 to 96723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,805 DEBUG Processing 322/862 atomic regions from SNP 96423 to 97023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,017 DEBUG Processing 323/862 atomic regions from SNP 96723 to 97323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,128 DEBUG Segmenting atomic regions: 2025-01-31 09:48:39,224 DEBUG Processing 1/752 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,227 DEBUG Processing 324/862 atomic regions from SNP 97023 to 97623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,425 DEBUG Processing 2/752 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,443 DEBUG Processing 325/862 atomic regions from SNP 97323 to 97923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,625 DEBUG Processing 3/752 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,659 DEBUG Processing 326/862 atomic regions from SNP 97623 to 98223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,825 DEBUG Processing 4/752 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,870 DEBUG Processing 327/862 atomic regions from SNP 97923 to 98523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,024 DEBUG Processing 5/752 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,082 DEBUG Processing 328/862 atomic regions from SNP 98223 to 98823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,225 DEBUG Processing 6/752 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,296 DEBUG Processing 329/862 atomic regions from SNP 98523 to 99123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,426 DEBUG Processing 7/752 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,511 DEBUG Processing 330/862 atomic regions from SNP 98823 to 99423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,642 DEBUG Processing 8/752 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,722 DEBUG Processing 331/862 atomic regions from SNP 99123 to 99723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,863 DEBUG Processing 9/752 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,934 DEBUG Processing 332/862 atomic regions from SNP 99423 to 100023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,063 DEBUG Processing 10/752 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,146 DEBUG Processing 333/862 atomic regions from SNP 99723 to 100323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,263 DEBUG Processing 11/752 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,360 DEBUG Processing 334/862 atomic regions from SNP 100023 to 100623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,462 DEBUG Processing 12/752 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,572 DEBUG Processing 335/862 atomic regions from SNP 100323 to 100923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,662 DEBUG Processing 13/752 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,784 DEBUG Processing 336/862 atomic regions from SNP 100623 to 101223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,860 DEBUG Processing 14/752 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,996 DEBUG Processing 337/862 atomic regions from SNP 100923 to 101523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,059 DEBUG Processing 15/752 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,206 DEBUG Processing 338/862 atomic regions from SNP 101223 to 101823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,258 DEBUG Processing 16/752 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,419 DEBUG Processing 339/862 atomic regions from SNP 101523 to 102123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,481 DEBUG Processing 17/752 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,631 DEBUG Processing 340/862 atomic regions from SNP 101823 to 102423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,683 DEBUG Processing 18/752 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,839 DEBUG Processing 341/862 atomic regions from SNP 102123 to 102723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,881 DEBUG Processing 19/752 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,050 DEBUG Processing 342/862 atomic regions from SNP 102423 to 103023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,080 DEBUG Processing 20/752 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,261 DEBUG Processing 343/862 atomic regions from SNP 102723 to 103323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,280 DEBUG Processing 21/752 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,471 DEBUG Processing 344/862 atomic regions from SNP 103023 to 103623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,479 DEBUG Processing 22/752 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,679 DEBUG Processing 23/752 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,680 DEBUG Processing 345/862 atomic regions from SNP 103323 to 103923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,878 DEBUG Processing 24/752 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,886 DEBUG Processing 346/862 atomic regions from SNP 103623 to 104223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,078 DEBUG Processing 25/752 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,101 DEBUG Processing 347/862 atomic regions from SNP 103923 to 104523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,283 DEBUG Processing 26/752 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,310 DEBUG Processing 348/862 atomic regions from SNP 104223 to 104823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,504 DEBUG Processing 27/752 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,521 DEBUG Processing 349/862 atomic regions from SNP 104523 to 105123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,704 DEBUG Processing 28/752 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,733 DEBUG Processing 350/862 atomic regions from SNP 104823 to 105423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,903 DEBUG Processing 29/752 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,944 DEBUG Processing 351/862 atomic regions from SNP 105123 to 105723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,101 DEBUG Processing 30/752 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,152 DEBUG Processing 352/862 atomic regions from SNP 105423 to 106023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,298 DEBUG Processing 31/752 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,340 DEBUG Segmenting atomic regions: 2025-01-31 09:48:45,361 DEBUG Processing 353/862 atomic regions from SNP 105723 to 106323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,439 DEBUG Processing 1/708 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,497 DEBUG Processing 32/752 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,573 DEBUG Processing 354/862 atomic regions from SNP 106023 to 106623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,635 DEBUG Processing 2/708 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,694 DEBUG Processing 33/752 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,787 DEBUG Processing 355/862 atomic regions from SNP 106323 to 106923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,831 DEBUG Processing 3/708 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,893 DEBUG Processing 34/752 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,000 DEBUG Processing 356/862 atomic regions from SNP 106623 to 107223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,031 DEBUG Processing 4/708 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,090 DEBUG Processing 35/752 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,212 DEBUG Processing 357/862 atomic regions from SNP 106923 to 107523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,229 DEBUG Processing 5/708 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,288 DEBUG Processing 36/752 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,429 DEBUG Processing 358/862 atomic regions from SNP 107223 to 107823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,444 DEBUG Processing 6/708 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,487 DEBUG Processing 37/752 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,647 DEBUG Processing 359/862 atomic regions from SNP 107523 to 108123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,679 DEBUG Processing 7/708 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,683 DEBUG Processing 38/752 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,864 DEBUG Processing 360/862 atomic regions from SNP 107823 to 108423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,881 DEBUG Processing 39/752 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,903 DEBUG Processing 8/708 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,074 DEBUG Processing 361/862 atomic regions from SNP 108123 to 108723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,078 DEBUG Processing 40/752 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,114 DEBUG Processing 9/708 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,276 DEBUG Processing 41/752 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,285 DEBUG Processing 362/862 atomic regions from SNP 108423 to 109023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,340 DEBUG Processing 10/708 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,475 DEBUG Processing 42/752 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,500 DEBUG Processing 363/862 atomic regions from SNP 108723 to 109323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,562 DEBUG Processing 11/708 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,673 DEBUG Processing 43/752 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,715 DEBUG Processing 364/862 atomic regions from SNP 109023 to 109623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,789 DEBUG Processing 12/708 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,871 DEBUG Processing 44/752 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,926 DEBUG Processing 365/862 atomic regions from SNP 109323 to 109923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,017 DEBUG Processing 13/708 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,066 DEBUG Processing 45/752 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,134 DEBUG Processing 366/862 atomic regions from SNP 109623 to 110223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,234 DEBUG Processing 14/708 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,264 DEBUG Processing 46/752 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,343 DEBUG Processing 367/862 atomic regions from SNP 109923 to 110523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,459 DEBUG Processing 15/708 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,461 DEBUG Processing 47/752 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,554 DEBUG Processing 368/862 atomic regions from SNP 110223 to 110823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,659 DEBUG Processing 48/752 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,663 DEBUG Processing 16/708 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,764 DEBUG Processing 369/862 atomic regions from SNP 110523 to 111123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,855 DEBUG Processing 49/752 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,860 DEBUG Processing 17/708 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,975 DEBUG Processing 370/862 atomic regions from SNP 110823 to 111423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,053 DEBUG Processing 50/752 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,057 DEBUG Processing 18/708 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,183 DEBUG Processing 371/862 atomic regions from SNP 111123 to 111723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,256 DEBUG Processing 51/752 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,257 DEBUG Processing 19/708 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,393 DEBUG Processing 372/862 atomic regions from SNP 111423 to 112023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,452 DEBUG Processing 52/752 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,456 DEBUG Processing 20/708 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,602 DEBUG Processing 373/862 atomic regions from SNP 111723 to 112323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,648 DEBUG Processing 53/752 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,652 DEBUG Processing 21/708 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,814 DEBUG Processing 374/862 atomic regions from SNP 112023 to 112623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,845 DEBUG Processing 54/752 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,870 DEBUG Processing 22/708 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,041 DEBUG Processing 55/752 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,054 DEBUG Processing 375/862 atomic regions from SNP 112323 to 112923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,101 DEBUG Processing 23/708 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,237 DEBUG Processing 56/752 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,293 DEBUG Processing 376/862 atomic regions from SNP 112623 to 113223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,327 DEBUG Processing 24/708 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,438 DEBUG Processing 57/752 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,513 DEBUG Processing 377/862 atomic regions from SNP 112923 to 113523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,556 DEBUG Processing 25/708 atomic regions from SNP 7224 to 7824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,654 DEBUG Processing 58/752 atomic regions from SNP 17157 to 17757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,725 DEBUG Processing 378/862 atomic regions from SNP 113223 to 113823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,773 DEBUG Processing 26/708 atomic regions from SNP 7524 to 8124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,858 DEBUG Processing 59/752 atomic regions from SNP 17457 to 18057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,935 DEBUG Processing 379/862 atomic regions from SNP 113523 to 114123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,973 DEBUG Processing 27/708 atomic regions from SNP 7824 to 8424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,058 DEBUG Processing 60/752 atomic regions from SNP 17757 to 18357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,147 DEBUG Processing 380/862 atomic regions from SNP 113823 to 114423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,188 DEBUG Processing 28/708 atomic regions from SNP 8124 to 8724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,252 DEBUG Processing 61/752 atomic regions from SNP 18057 to 18657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,357 DEBUG Processing 381/862 atomic regions from SNP 114123 to 114723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,414 DEBUG Processing 29/708 atomic regions from SNP 8424 to 9024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,447 DEBUG Processing 62/752 atomic regions from SNP 18357 to 18957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,568 DEBUG Processing 382/862 atomic regions from SNP 114423 to 115023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,638 DEBUG Processing 30/708 atomic regions from SNP 8724 to 9324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,643 DEBUG Processing 63/752 atomic regions from SNP 18657 to 19257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,783 DEBUG Processing 383/862 atomic regions from SNP 114723 to 115323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,860 DEBUG Processing 64/752 atomic regions from SNP 18957 to 19557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,860 DEBUG Processing 31/708 atomic regions from SNP 9024 to 9624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,997 DEBUG Processing 384/862 atomic regions from SNP 115023 to 115623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,073 DEBUG Processing 65/752 atomic regions from SNP 19257 to 19857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,094 DEBUG Processing 32/708 atomic regions from SNP 9324 to 9924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,208 DEBUG Processing 385/862 atomic regions from SNP 115323 to 115923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,271 DEBUG Processing 66/752 atomic regions from SNP 19557 to 20157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,329 DEBUG Processing 33/708 atomic regions from SNP 9624 to 10224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,417 DEBUG Processing 386/862 atomic regions from SNP 115623 to 116223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,466 DEBUG Processing 67/752 atomic regions from SNP 19857 to 20457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,549 DEBUG Processing 34/708 atomic regions from SNP 9924 to 10524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,629 DEBUG Processing 387/862 atomic regions from SNP 115923 to 116523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,661 DEBUG Processing 68/752 atomic regions from SNP 20157 to 20757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,775 DEBUG Processing 35/708 atomic regions from SNP 10224 to 10824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,843 DEBUG Processing 388/862 atomic regions from SNP 116223 to 116823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,857 DEBUG Processing 69/752 atomic regions from SNP 20457 to 21057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,987 DEBUG Processing 36/708 atomic regions from SNP 10524 to 11124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,052 DEBUG Processing 70/752 atomic regions from SNP 20757 to 21357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,057 DEBUG Processing 389/862 atomic regions from SNP 116523 to 117123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,183 DEBUG Processing 37/708 atomic regions from SNP 10824 to 11424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,251 DEBUG Processing 71/752 atomic regions from SNP 21057 to 21657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,271 DEBUG Processing 390/862 atomic regions from SNP 116823 to 117423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,381 DEBUG Processing 38/708 atomic regions from SNP 11124 to 11724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,448 DEBUG Processing 72/752 atomic regions from SNP 21357 to 21957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,482 DEBUG Processing 391/862 atomic regions from SNP 117123 to 117723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,592 DEBUG Processing 39/708 atomic regions from SNP 11424 to 12024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,642 DEBUG Processing 73/752 atomic regions from SNP 21657 to 22257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,692 DEBUG Processing 392/862 atomic regions from SNP 117423 to 118023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,808 DEBUG Processing 40/708 atomic regions from SNP 11724 to 12324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,838 DEBUG Processing 74/752 atomic regions from SNP 21957 to 22557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,905 DEBUG Processing 393/862 atomic regions from SNP 117723 to 118323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,032 DEBUG Processing 75/752 atomic regions from SNP 22257 to 22857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,038 DEBUG Processing 41/708 atomic regions from SNP 12024 to 12624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,144 DEBUG Processing 394/862 atomic regions from SNP 118023 to 118623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,227 DEBUG Processing 76/752 atomic regions from SNP 22557 to 23157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,257 DEBUG Processing 42/708 atomic regions from SNP 12324 to 12924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,387 DEBUG Processing 395/862 atomic regions from SNP 118323 to 118923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,424 DEBUG Processing 77/752 atomic regions from SNP 22857 to 23457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,492 DEBUG Processing 43/708 atomic regions from SNP 12624 to 13224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,600 DEBUG Processing 396/862 atomic regions from SNP 118623 to 119223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,627 DEBUG Processing 78/752 atomic regions from SNP 23157 to 23757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,717 DEBUG Processing 44/708 atomic regions from SNP 12924 to 13524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,817 DEBUG Processing 397/862 atomic regions from SNP 118923 to 119523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,822 DEBUG Processing 79/752 atomic regions from SNP 23457 to 24057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,867 DEBUG Segmenting atomic regions: 2025-01-31 09:48:54,922 DEBUG Processing 45/708 atomic regions from SNP 13224 to 13824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,960 DEBUG Processing 1/738 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,019 DEBUG Processing 80/752 atomic regions from SNP 23757 to 24357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,048 DEBUG Processing 398/862 atomic regions from SNP 119223 to 119823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,122 DEBUG Processing 46/708 atomic regions from SNP 13524 to 14124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,159 DEBUG Processing 2/738 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,217 DEBUG Processing 81/752 atomic regions from SNP 24057 to 24657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,285 DEBUG Processing 399/862 atomic regions from SNP 119523 to 120123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,320 DEBUG Processing 47/708 atomic regions from SNP 13824 to 14424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,378 DEBUG Processing 3/738 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,416 DEBUG Processing 82/752 atomic regions from SNP 24357 to 24957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,516 DEBUG Processing 48/708 atomic regions from SNP 14124 to 14724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,520 DEBUG Processing 400/862 atomic regions from SNP 119823 to 120423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,603 DEBUG Processing 4/738 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,614 DEBUG Processing 83/752 atomic regions from SNP 24657 to 25257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,715 DEBUG Processing 49/708 atomic regions from SNP 14424 to 15024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,755 DEBUG Processing 401/862 atomic regions from SNP 120123 to 120723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,803 DEBUG Processing 5/738 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,813 DEBUG Processing 84/752 atomic regions from SNP 24957 to 25557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,918 DEBUG Processing 50/708 atomic regions from SNP 14724 to 15324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,982 DEBUG Processing 402/862 atomic regions from SNP 120423 to 121023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,008 DEBUG Processing 6/738 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,011 DEBUG Processing 85/752 atomic regions from SNP 25257 to 25857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,115 DEBUG Processing 51/708 atomic regions from SNP 15024 to 15624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,223 DEBUG Processing 403/862 atomic regions from SNP 120723 to 121323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,225 DEBUG Processing 86/752 atomic regions from SNP 25557 to 26157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,228 DEBUG Processing 7/738 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,314 DEBUG Processing 52/708 atomic regions from SNP 15324 to 15924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,425 DEBUG Processing 87/752 atomic regions from SNP 25857 to 26457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,458 DEBUG Processing 8/738 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,468 DEBUG Processing 404/862 atomic regions from SNP 121023 to 121623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,516 DEBUG Processing 53/708 atomic regions from SNP 15624 to 16224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,626 DEBUG Processing 88/752 atomic regions from SNP 26157 to 26757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,664 DEBUG Processing 9/738 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,715 DEBUG Processing 54/708 atomic regions from SNP 15924 to 16524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,718 DEBUG Processing 405/862 atomic regions from SNP 121323 to 121923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,825 DEBUG Processing 89/752 atomic regions from SNP 26457 to 27057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,867 DEBUG Processing 10/738 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,933 DEBUG Processing 55/708 atomic regions from SNP 16224 to 16824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,957 DEBUG Processing 406/862 atomic regions from SNP 121623 to 122223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,032 DEBUG Processing 90/752 atomic regions from SNP 26757 to 27357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,068 DEBUG Processing 11/738 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,153 DEBUG Processing 56/708 atomic regions from SNP 16524 to 17124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,175 DEBUG Processing 407/862 atomic regions from SNP 121923 to 122523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,237 DEBUG Processing 91/752 atomic regions from SNP 27057 to 27657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,268 DEBUG Processing 12/738 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,353 DEBUG Processing 57/708 atomic regions from SNP 16824 to 17424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,395 DEBUG Processing 408/862 atomic regions from SNP 122223 to 122823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,439 DEBUG Processing 92/752 atomic regions from SNP 27357 to 27957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,470 DEBUG Processing 13/738 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,553 DEBUG Processing 58/708 atomic regions from SNP 17124 to 17724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,609 DEBUG Processing 409/862 atomic regions from SNP 122523 to 123123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,640 DEBUG Processing 93/752 atomic regions from SNP 27657 to 28257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,673 DEBUG Processing 14/738 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,753 DEBUG Processing 59/708 atomic regions from SNP 17424 to 18024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,822 DEBUG Processing 410/862 atomic regions from SNP 122823 to 123423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,846 DEBUG Processing 94/752 atomic regions from SNP 27957 to 28557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,875 DEBUG Processing 15/738 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,957 DEBUG Processing 60/708 atomic regions from SNP 17724 to 18324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,038 DEBUG Processing 411/862 atomic regions from SNP 123123 to 123723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,047 DEBUG Processing 95/752 atomic regions from SNP 28257 to 28857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,075 DEBUG Processing 16/738 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,156 DEBUG Processing 61/708 atomic regions from SNP 18024 to 18624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,248 DEBUG Processing 96/752 atomic regions from SNP 28557 to 29157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,255 DEBUG Processing 412/862 atomic regions from SNP 123423 to 124023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,277 DEBUG Processing 17/738 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,371 DEBUG Processing 62/708 atomic regions from SNP 18324 to 18924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,449 DEBUG Processing 97/752 atomic regions from SNP 28857 to 29457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,468 DEBUG Processing 413/862 atomic regions from SNP 123723 to 124323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,478 DEBUG Processing 18/738 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,591 DEBUG Processing 63/708 atomic regions from SNP 18624 to 19224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,658 DEBUG Processing 98/752 atomic regions from SNP 29157 to 29757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,678 DEBUG Processing 19/738 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,681 DEBUG Processing 414/862 atomic regions from SNP 124023 to 124623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,814 DEBUG Processing 64/708 atomic regions from SNP 18924 to 19524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,873 DEBUG Processing 99/752 atomic regions from SNP 29457 to 30057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,880 DEBUG Processing 20/738 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,897 DEBUG Processing 415/862 atomic regions from SNP 124323 to 124923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,019 DEBUG Processing 65/708 atomic regions from SNP 19224 to 19824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,081 DEBUG Processing 21/738 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,084 DEBUG Processing 100/752 atomic regions from SNP 29757 to 30357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,116 DEBUG Processing 416/862 atomic regions from SNP 124623 to 125223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,213 DEBUG Processing 66/708 atomic regions from SNP 19524 to 20124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,283 DEBUG Processing 22/738 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,304 DEBUG Processing 101/752 atomic regions from SNP 30057 to 30657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,333 DEBUG Processing 417/862 atomic regions from SNP 124923 to 125523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,409 DEBUG Processing 67/708 atomic regions from SNP 19824 to 20424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,482 DEBUG Processing 23/738 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,531 DEBUG Processing 102/752 atomic regions from SNP 30357 to 30957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,551 DEBUG Processing 418/862 atomic regions from SNP 125223 to 125823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,613 DEBUG Processing 68/708 atomic regions from SNP 20124 to 20724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,682 DEBUG Processing 24/738 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,734 DEBUG Processing 103/752 atomic regions from SNP 30657 to 31257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,776 DEBUG Processing 419/862 atomic regions from SNP 125523 to 126123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,816 DEBUG Processing 69/708 atomic regions from SNP 20424 to 21024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,884 DEBUG Processing 25/738 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,937 DEBUG Processing 104/752 atomic regions from SNP 30957 to 31557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,994 DEBUG Processing 420/862 atomic regions from SNP 125823 to 126423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,018 DEBUG Processing 70/708 atomic regions from SNP 20724 to 21324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,086 DEBUG Processing 26/738 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,140 DEBUG Processing 105/752 atomic regions from SNP 31257 to 31857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,214 DEBUG Processing 421/862 atomic regions from SNP 126123 to 126723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,221 DEBUG Processing 71/708 atomic regions from SNP 21024 to 21624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,288 DEBUG Processing 27/738 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,346 DEBUG Processing 106/752 atomic regions from SNP 31557 to 32157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,428 DEBUG Processing 72/708 atomic regions from SNP 21324 to 21924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,439 DEBUG Processing 422/862 atomic regions from SNP 126423 to 127023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,491 DEBUG Processing 28/738 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,551 DEBUG Processing 107/752 atomic regions from SNP 31857 to 32457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,635 DEBUG Processing 73/708 atomic regions from SNP 21624 to 22224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,661 DEBUG Processing 423/862 atomic regions from SNP 126723 to 127323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,690 DEBUG Processing 29/738 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,762 DEBUG Processing 108/752 atomic regions from SNP 32157 to 32757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,838 DEBUG Processing 74/708 atomic regions from SNP 21924 to 22524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,882 DEBUG Processing 424/862 atomic regions from SNP 127023 to 127623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,893 DEBUG Processing 30/738 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,966 DEBUG Processing 109/752 atomic regions from SNP 32457 to 33057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,040 DEBUG Processing 75/708 atomic regions from SNP 22224 to 22824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,095 DEBUG Processing 31/738 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,099 DEBUG Processing 425/862 atomic regions from SNP 127323 to 127923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,168 DEBUG Processing 110/752 atomic regions from SNP 32757 to 33357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,240 DEBUG Processing 76/708 atomic regions from SNP 22524 to 23124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,298 DEBUG Processing 32/738 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,317 DEBUG Processing 426/862 atomic regions from SNP 127623 to 128223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,367 DEBUG Processing 111/752 atomic regions from SNP 33057 to 33657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,441 DEBUG Processing 77/708 atomic regions from SNP 22824 to 23424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,499 DEBUG Processing 33/738 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,534 DEBUG Processing 427/862 atomic regions from SNP 127923 to 128523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,569 DEBUG Processing 112/752 atomic regions from SNP 33357 to 33957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,641 DEBUG Processing 78/708 atomic regions from SNP 23124 to 23724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,702 DEBUG Processing 34/738 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,753 DEBUG Processing 428/862 atomic regions from SNP 128223 to 128823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,772 DEBUG Processing 113/752 atomic regions from SNP 33657 to 34257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,837 DEBUG Processing 79/708 atomic regions from SNP 23424 to 24024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,903 DEBUG Processing 35/738 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,973 DEBUG Processing 114/752 atomic regions from SNP 33957 to 34557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,974 DEBUG Processing 429/862 atomic regions from SNP 128523 to 129123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,061 DEBUG Processing 80/708 atomic regions from SNP 23724 to 24324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,105 DEBUG Processing 36/738 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,176 DEBUG Processing 115/752 atomic regions from SNP 34257 to 34857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,192 DEBUG Processing 430/862 atomic regions from SNP 128823 to 129423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,265 DEBUG Processing 81/708 atomic regions from SNP 24024 to 24624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,307 DEBUG Processing 37/738 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,379 DEBUG Processing 116/752 atomic regions from SNP 34557 to 35157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,407 DEBUG Processing 431/862 atomic regions from SNP 129123 to 129723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,464 DEBUG Processing 82/708 atomic regions from SNP 24324 to 24924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,509 DEBUG Processing 38/738 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,583 DEBUG Processing 117/752 atomic regions from SNP 34857 to 35457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,623 DEBUG Processing 432/862 atomic regions from SNP 129423 to 130023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,663 DEBUG Processing 83/708 atomic regions from SNP 24624 to 25224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,719 DEBUG Processing 39/738 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,787 DEBUG Processing 118/752 atomic regions from SNP 35157 to 35757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,841 DEBUG Processing 433/862 atomic regions from SNP 129723 to 130323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,867 DEBUG Processing 84/708 atomic regions from SNP 24924 to 25524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,932 DEBUG Processing 40/738 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,991 DEBUG Processing 119/752 atomic regions from SNP 35457 to 36057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,064 DEBUG Processing 434/862 atomic regions from SNP 130023 to 130623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,075 DEBUG Processing 85/708 atomic regions from SNP 25224 to 25824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,135 DEBUG Processing 41/738 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,193 DEBUG Processing 120/752 atomic regions from SNP 35757 to 36357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,276 DEBUG Processing 86/708 atomic regions from SNP 25524 to 26124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,281 DEBUG Processing 435/862 atomic regions from SNP 130323 to 130923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,337 DEBUG Processing 42/738 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,394 DEBUG Processing 121/752 atomic regions from SNP 36057 to 36657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,476 DEBUG Processing 87/708 atomic regions from SNP 25824 to 26424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,497 DEBUG Processing 436/862 atomic regions from SNP 130623 to 131223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,540 DEBUG Processing 43/738 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,597 DEBUG Processing 122/752 atomic regions from SNP 36357 to 36957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,676 DEBUG Processing 88/708 atomic regions from SNP 26124 to 26724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,712 DEBUG Processing 437/862 atomic regions from SNP 130923 to 131523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,744 DEBUG Processing 44/738 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,804 DEBUG Processing 123/752 atomic regions from SNP 36657 to 37257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,875 DEBUG Processing 89/708 atomic regions from SNP 26424 to 27024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,925 DEBUG Processing 438/862 atomic regions from SNP 131223 to 131823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,945 DEBUG Processing 45/738 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,012 DEBUG Processing 124/752 atomic regions from SNP 36957 to 37557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,074 DEBUG Processing 90/708 atomic regions from SNP 26724 to 27324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,137 DEBUG Processing 439/862 atomic regions from SNP 131523 to 132123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,146 DEBUG Processing 46/738 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,214 DEBUG Processing 125/752 atomic regions from SNP 37257 to 37857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,272 DEBUG Processing 91/708 atomic regions from SNP 27024 to 27624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,350 DEBUG Processing 440/862 atomic regions from SNP 131823 to 132423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,372 DEBUG Processing 47/738 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,415 DEBUG Processing 126/752 atomic regions from SNP 37557 to 38157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,473 DEBUG Processing 92/708 atomic regions from SNP 27324 to 27924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,562 DEBUG Processing 441/862 atomic regions from SNP 132123 to 132723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,580 DEBUG Processing 48/738 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,624 DEBUG Processing 127/752 atomic regions from SNP 37857 to 38457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,674 DEBUG Processing 93/708 atomic regions from SNP 27624 to 28224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,774 DEBUG Processing 442/862 atomic regions from SNP 132423 to 133023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,783 DEBUG Processing 49/738 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,833 DEBUG Processing 128/752 atomic regions from SNP 38157 to 38757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,871 DEBUG Processing 94/708 atomic regions from SNP 27924 to 28524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,982 DEBUG Processing 443/862 atomic regions from SNP 132723 to 133323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,010 DEBUG Processing 50/738 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,035 DEBUG Processing 129/752 atomic regions from SNP 38457 to 39057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,075 DEBUG Processing 95/708 atomic regions from SNP 28224 to 28824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,192 DEBUG Processing 444/862 atomic regions from SNP 133023 to 133623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,238 DEBUG Processing 130/752 atomic regions from SNP 38757 to 39357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,242 DEBUG Processing 51/738 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,273 DEBUG Processing 96/708 atomic regions from SNP 28524 to 29124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,401 DEBUG Processing 445/862 atomic regions from SNP 133323 to 133923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,442 DEBUG Processing 131/752 atomic regions from SNP 39057 to 39657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,446 DEBUG Processing 52/738 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,474 DEBUG Processing 97/708 atomic regions from SNP 28824 to 29424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,609 DEBUG Processing 446/862 atomic regions from SNP 133623 to 134223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,646 DEBUG Processing 132/752 atomic regions from SNP 39357 to 39957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,650 DEBUG Processing 53/738 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,676 DEBUG Processing 98/708 atomic regions from SNP 29124 to 29724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,817 DEBUG Processing 447/862 atomic regions from SNP 133923 to 134523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,849 DEBUG Processing 133/752 atomic regions from SNP 39657 to 40257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,853 DEBUG Processing 54/738 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,877 DEBUG Processing 99/708 atomic regions from SNP 29424 to 30024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,027 DEBUG Processing 448/862 atomic regions from SNP 134223 to 134823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,052 DEBUG Processing 134/752 atomic regions from SNP 39957 to 40557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,056 DEBUG Processing 55/738 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,076 DEBUG Processing 100/708 atomic regions from SNP 29724 to 30324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,238 DEBUG Processing 449/862 atomic regions from SNP 134523 to 135123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,255 DEBUG Processing 135/752 atomic regions from SNP 40257 to 40857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,260 DEBUG Processing 56/738 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,275 DEBUG Processing 101/708 atomic regions from SNP 30024 to 30624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,448 DEBUG Processing 450/862 atomic regions from SNP 134823 to 135423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,459 DEBUG Processing 136/752 atomic regions from SNP 40557 to 41157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,465 DEBUG Processing 57/738 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,473 DEBUG Processing 102/708 atomic regions from SNP 30324 to 30924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,659 DEBUG Processing 451/862 atomic regions from SNP 135123 to 135723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,664 DEBUG Processing 137/752 atomic regions from SNP 40857 to 41457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,670 DEBUG Processing 103/708 atomic regions from SNP 30624 to 31224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,672 DEBUG Processing 58/738 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,868 DEBUG Processing 104/708 atomic regions from SNP 30924 to 31524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,868 DEBUG Processing 138/752 atomic regions from SNP 41157 to 41757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,870 DEBUG Processing 452/862 atomic regions from SNP 135423 to 136023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,889 DEBUG Processing 59/738 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,067 DEBUG Processing 105/708 atomic regions from SNP 31224 to 31824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,071 DEBUG Processing 139/752 atomic regions from SNP 41457 to 42057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,084 DEBUG Processing 453/862 atomic regions from SNP 135723 to 136323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,116 DEBUG Processing 60/738 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,265 DEBUG Processing 106/708 atomic regions from SNP 31524 to 32124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,275 DEBUG Processing 140/752 atomic regions from SNP 41757 to 42357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,298 DEBUG Processing 454/862 atomic regions from SNP 136023 to 136623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,351 DEBUG Processing 61/738 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,462 DEBUG Processing 107/708 atomic regions from SNP 31824 to 32424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,476 DEBUG Processing 141/752 atomic regions from SNP 42057 to 42657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,514 DEBUG Processing 455/862 atomic regions from SNP 136323 to 136923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,569 DEBUG Processing 62/738 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,661 DEBUG Processing 108/708 atomic regions from SNP 32124 to 32724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,677 DEBUG Processing 142/752 atomic regions from SNP 42357 to 42957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,726 DEBUG Processing 456/862 atomic regions from SNP 136623 to 137223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,770 DEBUG Processing 63/738 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,870 DEBUG Processing 109/708 atomic regions from SNP 32424 to 33024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,879 DEBUG Processing 143/752 atomic regions from SNP 42657 to 43257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,912 DEBUG Subchromosome time: 372.4662571437657, subchromosome SNPs: 341771 2025-01-31 09:49:07,913 DEBUG Estimated BADs: [0.56, 3.33, 0.83, 0.56, 0.83, 3.33, 1.67, 11.67, 0.83, 3.33, 1.67, 6.67, 1.67, 3.33, 1.67, 3.33, 1.67, 5.00, 13.33, 1.67, 3.33, 16.67, 3.33, 8.33, 0.83, 1.67, 0.56, 3.33, 1.67, 5.00, 1.67, 0.56, 1.67, 0.56, 1.67, 5.00, 1.67, 3.33, 1.67, 6.67, 3.33, 1.67, 3.33, 11.67, 1.67, 3.33] SNP counts: [10943, 594, 11766, 24375, 4524, 11264, 8550, 103, 13342, 1109, 4110, 401, 6986, 1481, 5083, 4602, 16283, 1594, 702, 16789, 1968, 314, 13238, 433, 20477, 3309, 17550, 3178, 19972, 9429, 6589, 5401, 2700, 8409, 10262, 3575, 5982, 14703, 4800, 896, 1777, 10540, 13164, 185, 9744, 8575] SNP IDs counts: [10943, 594, 11766, 24375, 4524, 11264, 8550, 103, 13342, 1109, 4110, 401, 6986, 1481, 5083, 4602, 16283, 1594, 702, 16789, 1968, 314, 13238, 433, 20477, 3309, 17550, 3178, 19972, 9429, 6589, 5401, 2700, 8409, 10262, 3575, 5982, 14703, 4800, 896, 1777, 10540, 13164, 185, 9744, 8575] Critical gap: 756193bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.54Mbp, 9.86Mbp, 16.62Mbp, 30.79Mbp, 33.46Mbp, 39.51Mbp, 44.10Mbp, 44.16Mbp, 52.08Mbp, 52.68Mbp, 55.03Mbp, 55.24Mbp, 59.12Mbp, 59.89Mbp, 62.69Mbp, 65.19Mbp, 74.21Mbp, 75.05Mbp, 75.48Mbp, 84.84Mbp, 86.39Mbp, 86.55Mbp, 93.60Mbp, 93.83Mbp, 105.97Mbp, 107.83Mbp, 118.31Mbp, 119.99Mbp, 131.02Mbp, 135.97Mbp, 139.54Mbp, 142.80Mbp, 144.44Mbp, 149.38Mbp, 154.98Mbp, 156.92Mbp, 160.12Mbp, 168.21Mbp, 170.83Mbp, 171.33Mbp, 172.30Mbp, 178.30Mbp, 185.42Mbp, 185.52Mbp, 190.71Mbp, 195.47Mbp] 2025-01-31 09:49:07,913 DEBUG chr1 time: 372.46702286973596 s 2025-01-31 09:49:07,938 DEBUG Processing 457/862 atomic regions from SNP 136923 to 137523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,968 DEBUG Processing 64/738 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,084 DEBUG Processing 144/752 atomic regions from SNP 42957 to 43557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,098 DEBUG Processing 110/708 atomic regions from SNP 32724 to 33324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,116 DEBUG chr1: Fitting background model for 46 segments 2025-01-31 09:49:08,151 DEBUG Processing 458/862 atomic regions from SNP 137223 to 137823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,173 DEBUG Processing 65/738 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,287 DEBUG Processing 145/752 atomic regions from SNP 43257 to 43857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,330 DEBUG Processing 111/708 atomic regions from SNP 33024 to 33624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,367 DEBUG Processing 459/862 atomic regions from SNP 137523 to 138123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,378 DEBUG Processing 66/738 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,495 DEBUG Processing 146/752 atomic regions from SNP 43557 to 44157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,555 DEBUG Processing 112/708 atomic regions from SNP 33324 to 33924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,583 DEBUG Processing 460/862 atomic regions from SNP 137823 to 138423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,585 DEBUG Processing 67/738 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,702 DEBUG Processing 147/752 atomic regions from SNP 43857 to 44457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,789 DEBUG Processing 113/708 atomic regions from SNP 33624 to 34224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,790 DEBUG Processing 68/738 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,802 DEBUG Processing 461/862 atomic regions from SNP 138123 to 138723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,903 DEBUG Processing 148/752 atomic regions from SNP 44157 to 44757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,993 DEBUG Processing 69/738 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,019 DEBUG Processing 462/862 atomic regions from SNP 138423 to 139023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,024 DEBUG Processing 114/708 atomic regions from SNP 33924 to 34524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,103 DEBUG Processing 149/752 atomic regions from SNP 44457 to 45057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,194 DEBUG Processing 70/738 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,237 DEBUG Processing 463/862 atomic regions from SNP 138723 to 139323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,259 DEBUG Processing 115/708 atomic regions from SNP 34224 to 34824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,303 DEBUG Processing 150/752 atomic regions from SNP 44757 to 45357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,420 DEBUG Processing 71/738 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,460 DEBUG Processing 464/862 atomic regions from SNP 139023 to 139623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,491 DEBUG Processing 116/708 atomic regions from SNP 34524 to 35124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,505 DEBUG Processing 151/752 atomic regions from SNP 45057 to 45657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,631 DEBUG Processing 72/738 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,685 DEBUG Processing 465/862 atomic regions from SNP 139323 to 139923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,708 DEBUG Processing 152/752 atomic regions from SNP 45357 to 45957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,726 DEBUG Processing 117/708 atomic regions from SNP 34824 to 35424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,832 DEBUG Processing 73/738 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,913 DEBUG Processing 153/752 atomic regions from SNP 45657 to 46257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,914 DEBUG Processing 466/862 atomic regions from SNP 139623 to 140223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,964 DEBUG Processing 118/708 atomic regions from SNP 35124 to 35724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,039 DEBUG Processing 74/738 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,120 DEBUG Processing 154/752 atomic regions from SNP 45957 to 46557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,167 DEBUG Processing 467/862 atomic regions from SNP 139923 to 140523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,197 DEBUG Processing 119/708 atomic regions from SNP 35424 to 36024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,246 DEBUG Processing 75/738 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,331 DEBUG Processing 155/752 atomic regions from SNP 46257 to 46857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,419 DEBUG Processing 468/862 atomic regions from SNP 140223 to 140823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,426 DEBUG Processing 120/708 atomic regions from SNP 35724 to 36324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,450 DEBUG Processing 76/738 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,535 DEBUG Processing 156/752 atomic regions from SNP 46557 to 47157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,638 DEBUG Processing 121/708 atomic regions from SNP 36024 to 36624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,656 DEBUG Processing 77/738 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,670 DEBUG Processing 469/862 atomic regions from SNP 140523 to 141123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,742 DEBUG Processing 157/752 atomic regions from SNP 46857 to 47457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,841 DEBUG Processing 122/708 atomic regions from SNP 36324 to 36924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,862 DEBUG Processing 78/738 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,909 DEBUG Processing 470/862 atomic regions from SNP 140823 to 141423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,947 DEBUG Processing 158/752 atomic regions from SNP 47157 to 47757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,041 DEBUG Processing 123/708 atomic regions from SNP 36624 to 37224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,063 DEBUG Processing 79/738 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,135 DEBUG Processing 471/862 atomic regions from SNP 141123 to 141723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,144 DEBUG Processing 159/752 atomic regions from SNP 47457 to 48057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,241 DEBUG Processing 124/708 atomic regions from SNP 36924 to 37524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,268 DEBUG Processing 80/738 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,344 DEBUG Processing 160/752 atomic regions from SNP 47757 to 48357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,353 DEBUG Processing 472/862 atomic regions from SNP 141423 to 142023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,453 DEBUG Processing 125/708 atomic regions from SNP 37224 to 37824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,474 DEBUG Processing 81/738 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,548 DEBUG Processing 161/752 atomic regions from SNP 48057 to 48657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,563 DEBUG Processing 473/862 atomic regions from SNP 141723 to 142323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,677 DEBUG Processing 126/708 atomic regions from SNP 37524 to 38124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,677 DEBUG Processing 82/738 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,782 DEBUG Processing 162/752 atomic regions from SNP 48357 to 48957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,783 DEBUG Processing 474/862 atomic regions from SNP 142023 to 142623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,881 DEBUG Processing 83/738 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,901 DEBUG Processing 127/708 atomic regions from SNP 37824 to 38424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,989 DEBUG Processing 163/752 atomic regions from SNP 48657 to 49257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,991 DEBUG Processing 475/862 atomic regions from SNP 142323 to 142923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,086 DEBUG Processing 84/738 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,100 DEBUG Processing 128/708 atomic regions from SNP 38124 to 38724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,194 DEBUG Processing 164/752 atomic regions from SNP 48957 to 49557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,197 DEBUG Processing 476/862 atomic regions from SNP 142623 to 143223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,301 DEBUG Processing 85/738 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,304 DEBUG Processing 129/708 atomic regions from SNP 38424 to 39024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,398 DEBUG Processing 165/752 atomic regions from SNP 49257 to 49857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,404 DEBUG Processing 477/862 atomic regions from SNP 142923 to 143523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,499 DEBUG Processing 130/708 atomic regions from SNP 38724 to 39324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,507 DEBUG Processing 86/738 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,602 DEBUG Processing 166/752 atomic regions from SNP 49557 to 50157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,610 DEBUG Processing 478/862 atomic regions from SNP 143223 to 143823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,695 DEBUG Processing 131/708 atomic regions from SNP 39024 to 39624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,713 DEBUG Processing 87/738 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,807 DEBUG Processing 167/752 atomic regions from SNP 49857 to 50457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,817 DEBUG Processing 479/862 atomic regions from SNP 143523 to 144123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,890 DEBUG Processing 132/708 atomic regions from SNP 39324 to 39924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,918 DEBUG Processing 88/738 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,011 DEBUG Processing 168/752 atomic regions from SNP 50157 to 50757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,025 DEBUG Processing 480/862 atomic regions from SNP 143823 to 144423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,087 DEBUG Processing 133/708 atomic regions from SNP 39624 to 40224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,124 DEBUG Processing 89/738 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,217 DEBUG Processing 169/752 atomic regions from SNP 50457 to 51057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,244 DEBUG Processing 481/862 atomic regions from SNP 144123 to 144723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,283 DEBUG Processing 134/708 atomic regions from SNP 39924 to 40524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,329 DEBUG Processing 90/738 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,421 DEBUG Processing 170/752 atomic regions from SNP 50757 to 51357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,465 DEBUG Processing 482/862 atomic regions from SNP 144423 to 145023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,479 DEBUG Processing 135/708 atomic regions from SNP 40224 to 40824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,535 DEBUG Processing 91/738 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,649 DEBUG Processing 171/752 atomic regions from SNP 51057 to 51657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,685 DEBUG Processing 136/708 atomic regions from SNP 40524 to 41124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,691 DEBUG Processing 483/862 atomic regions from SNP 144723 to 145323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,743 DEBUG Processing 92/738 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,857 DEBUG Processing 172/752 atomic regions from SNP 51357 to 51957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,900 DEBUG Processing 137/708 atomic regions from SNP 40824 to 41424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,924 DEBUG Processing 484/862 atomic regions from SNP 145023 to 145623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,956 DEBUG Processing 93/738 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,064 DEBUG Processing 173/752 atomic regions from SNP 51657 to 52257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,123 DEBUG Processing 138/708 atomic regions from SNP 41124 to 41724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,168 DEBUG Processing 485/862 atomic regions from SNP 145323 to 145923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,190 DEBUG Processing 94/738 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,285 DEBUG Processing 174/752 atomic regions from SNP 51957 to 52557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,336 DEBUG Processing 139/708 atomic regions from SNP 41424 to 42024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,397 DEBUG Processing 486/862 atomic regions from SNP 145623 to 146223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,409 DEBUG Processing 95/738 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,496 DEBUG Processing 175/752 atomic regions from SNP 52257 to 52857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,536 DEBUG Processing 140/708 atomic regions from SNP 41724 to 42324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,617 DEBUG Processing 96/738 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,638 DEBUG Processing 487/862 atomic regions from SNP 145923 to 146523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,703 DEBUG Processing 176/752 atomic regions from SNP 52557 to 53157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,727 DEBUG Processing 141/708 atomic regions from SNP 42024 to 42624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,824 DEBUG Processing 97/738 atomic regions from SNP 28896 to 29497 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,883 DEBUG Processing 488/862 atomic regions from SNP 146223 to 146823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,909 DEBUG Processing 177/752 atomic regions from SNP 52857 to 53457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,924 DEBUG Processing 142/708 atomic regions from SNP 42324 to 42924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,027 DEBUG Processing 98/738 atomic regions from SNP 29197 to 29798 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,112 DEBUG Processing 178/752 atomic regions from SNP 53157 to 53757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,123 DEBUG Processing 489/862 atomic regions from SNP 146523 to 147123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,131 DEBUG Processing 143/708 atomic regions from SNP 42624 to 43224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,232 DEBUG Processing 99/738 atomic regions from SNP 29498 to 30099 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,318 DEBUG Processing 179/752 atomic regions from SNP 53457 to 54057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,327 DEBUG Processing 144/708 atomic regions from SNP 42924 to 43524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,356 DEBUG Processing 490/862 atomic regions from SNP 146823 to 147423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,439 DEBUG Processing 100/738 atomic regions from SNP 29799 to 30400 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,522 DEBUG Processing 180/752 atomic regions from SNP 53757 to 54357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,528 DEBUG Processing 145/708 atomic regions from SNP 43224 to 43824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,596 DEBUG Processing 491/862 atomic regions from SNP 147123 to 147723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,642 DEBUG Processing 101/738 atomic regions from SNP 30100 to 30701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,725 DEBUG Processing 181/752 atomic regions from SNP 54057 to 54657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,725 DEBUG Processing 146/708 atomic regions from SNP 43524 to 44124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,831 DEBUG Processing 492/862 atomic regions from SNP 147423 to 148023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,847 DEBUG Processing 102/738 atomic regions from SNP 30401 to 31002 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,920 DEBUG Processing 147/708 atomic regions from SNP 43824 to 44424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,931 DEBUG Processing 182/752 atomic regions from SNP 54357 to 54957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,053 DEBUG Processing 493/862 atomic regions from SNP 147723 to 148323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,063 DEBUG Processing 103/738 atomic regions from SNP 30702 to 31303 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,115 DEBUG Processing 148/708 atomic regions from SNP 44124 to 44724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,136 DEBUG Processing 183/752 atomic regions from SNP 54657 to 55257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,274 DEBUG Processing 494/862 atomic regions from SNP 148023 to 148623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,277 DEBUG Processing 104/738 atomic regions from SNP 31003 to 31604 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,314 DEBUG Processing 149/708 atomic regions from SNP 44424 to 45024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,343 DEBUG Processing 184/752 atomic regions from SNP 54957 to 55557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,504 DEBUG Processing 105/738 atomic regions from SNP 31304 to 31905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,511 DEBUG Processing 495/862 atomic regions from SNP 148323 to 148923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,514 DEBUG Processing 150/708 atomic regions from SNP 44724 to 45324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,548 DEBUG Processing 185/752 atomic regions from SNP 55257 to 55857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,715 DEBUG Processing 151/708 atomic regions from SNP 45024 to 45624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,717 DEBUG Processing 106/738 atomic regions from SNP 31605 to 32206 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,753 DEBUG Processing 186/752 atomic regions from SNP 55557 to 56157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,758 DEBUG Processing 496/862 atomic regions from SNP 148623 to 149223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,913 DEBUG Processing 152/708 atomic regions from SNP 45324 to 45924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,938 DEBUG Processing 107/738 atomic regions from SNP 31906 to 32507 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,959 DEBUG Processing 187/752 atomic regions from SNP 55857 to 56457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,995 DEBUG Processing 497/862 atomic regions from SNP 148923 to 149523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,111 DEBUG Processing 153/708 atomic regions from SNP 45624 to 46224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,155 DEBUG Processing 108/738 atomic regions from SNP 32207 to 32808 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,165 DEBUG Processing 188/752 atomic regions from SNP 56157 to 56757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,233 DEBUG Processing 498/862 atomic regions from SNP 149223 to 149823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,308 DEBUG Processing 154/708 atomic regions from SNP 45924 to 46524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,371 DEBUG Processing 189/752 atomic regions from SNP 56457 to 57057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,383 DEBUG Processing 109/738 atomic regions from SNP 32508 to 33109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,465 DEBUG Processing 499/862 atomic regions from SNP 149523 to 150123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,505 DEBUG Processing 155/708 atomic regions from SNP 46224 to 46824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,574 DEBUG Processing 190/752 atomic regions from SNP 56757 to 57357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,612 DEBUG Processing 110/738 atomic regions from SNP 32809 to 33410 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,696 DEBUG Processing 500/862 atomic regions from SNP 149823 to 150423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,701 DEBUG Processing 156/708 atomic regions from SNP 46524 to 47124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,782 DEBUG Processing 191/752 atomic regions from SNP 57057 to 57657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,820 DEBUG Processing 111/738 atomic regions from SNP 33110 to 33711 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,897 DEBUG Processing 157/708 atomic regions from SNP 46824 to 47424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,929 DEBUG Processing 501/862 atomic regions from SNP 150123 to 150723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,986 DEBUG Processing 192/752 atomic regions from SNP 57357 to 57957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,021 DEBUG Processing 112/738 atomic regions from SNP 33411 to 34012 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,094 DEBUG Processing 158/708 atomic regions from SNP 47124 to 47724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,172 DEBUG Processing 502/862 atomic regions from SNP 150423 to 151023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,189 DEBUG Processing 193/752 atomic regions from SNP 57657 to 58257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,224 DEBUG Processing 113/738 atomic regions from SNP 33712 to 34313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,289 DEBUG Processing 159/708 atomic regions from SNP 47424 to 48024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,393 DEBUG Processing 194/752 atomic regions from SNP 57957 to 58557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,416 DEBUG Processing 503/862 atomic regions from SNP 150723 to 151323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,429 DEBUG Processing 114/738 atomic regions from SNP 34013 to 34614 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,483 DEBUG Processing 160/708 atomic regions from SNP 47724 to 48324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,600 DEBUG Processing 195/752 atomic regions from SNP 58257 to 58857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,636 DEBUG Processing 115/738 atomic regions from SNP 34314 to 34915 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,641 DEBUG Processing 504/862 atomic regions from SNP 151023 to 151623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,680 DEBUG Processing 161/708 atomic regions from SNP 48024 to 48624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,807 DEBUG Processing 196/752 atomic regions from SNP 58557 to 59157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,846 DEBUG Processing 116/738 atomic regions from SNP 34615 to 35216 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,865 DEBUG Processing 505/862 atomic regions from SNP 151323 to 151923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,878 DEBUG Processing 162/708 atomic regions from SNP 48324 to 48924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,015 DEBUG Processing 197/752 atomic regions from SNP 58857 to 59457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,054 DEBUG Processing 117/738 atomic regions from SNP 34916 to 35517 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,079 DEBUG Processing 163/708 atomic regions from SNP 48624 to 49224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,099 DEBUG Processing 506/862 atomic regions from SNP 151623 to 152223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,223 DEBUG Processing 198/752 atomic regions from SNP 59157 to 59757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,265 DEBUG Processing 118/738 atomic regions from SNP 35217 to 35818 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,282 DEBUG Processing 164/708 atomic regions from SNP 48924 to 49524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,324 DEBUG Processing 507/862 atomic regions from SNP 151923 to 152523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,429 DEBUG Processing 199/752 atomic regions from SNP 59457 to 60057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,472 DEBUG Processing 119/738 atomic regions from SNP 35518 to 36119 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,482 DEBUG Processing 165/708 atomic regions from SNP 49224 to 49824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,552 DEBUG Processing 508/862 atomic regions from SNP 152223 to 152823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,633 DEBUG Processing 200/752 atomic regions from SNP 59757 to 60357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,679 DEBUG Processing 120/738 atomic regions from SNP 35819 to 36420 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,679 DEBUG Processing 166/708 atomic regions from SNP 49524 to 50124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,762 DEBUG Processing 509/862 atomic regions from SNP 152523 to 153123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,838 DEBUG Processing 201/752 atomic regions from SNP 60057 to 60657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,875 DEBUG Processing 167/708 atomic regions from SNP 49824 to 50424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,884 DEBUG Processing 121/738 atomic regions from SNP 36120 to 36721 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,972 DEBUG Processing 510/862 atomic regions from SNP 152823 to 153423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,042 DEBUG Processing 202/752 atomic regions from SNP 60357 to 60957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,071 DEBUG Processing 168/708 atomic regions from SNP 50124 to 50724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,089 DEBUG Processing 122/738 atomic regions from SNP 36421 to 37022 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,181 DEBUG Processing 511/862 atomic regions from SNP 153123 to 153723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,247 DEBUG Processing 203/752 atomic regions from SNP 60657 to 61257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,268 DEBUG Processing 169/708 atomic regions from SNP 50424 to 51024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,294 DEBUG Processing 123/738 atomic regions from SNP 36722 to 37323 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,403 DEBUG Processing 512/862 atomic regions from SNP 153423 to 154023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,452 DEBUG Processing 204/752 atomic regions from SNP 60957 to 61557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,466 DEBUG Processing 170/708 atomic regions from SNP 50724 to 51324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,519 DEBUG Processing 124/738 atomic regions from SNP 37023 to 37624 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,641 DEBUG Processing 513/862 atomic regions from SNP 153723 to 154323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,655 DEBUG Processing 205/752 atomic regions from SNP 61257 to 61857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,665 DEBUG Processing 171/708 atomic regions from SNP 51024 to 51624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,748 DEBUG Processing 125/738 atomic regions from SNP 37324 to 37925 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,863 DEBUG Processing 206/752 atomic regions from SNP 61557 to 62157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,876 DEBUG Processing 172/708 atomic regions from SNP 51324 to 51924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,882 DEBUG Processing 514/862 atomic regions from SNP 154023 to 154623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,962 DEBUG Processing 126/738 atomic regions from SNP 37625 to 38226 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,063 DEBUG Processing 207/752 atomic regions from SNP 61857 to 62457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,077 DEBUG Processing 173/708 atomic regions from SNP 51624 to 52224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,118 DEBUG Processing 515/862 atomic regions from SNP 154323 to 154923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,170 DEBUG Processing 127/738 atomic regions from SNP 37926 to 38527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,261 DEBUG Processing 208/752 atomic regions from SNP 62157 to 62757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,275 DEBUG Processing 174/708 atomic regions from SNP 51924 to 52524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,360 DEBUG Processing 516/862 atomic regions from SNP 154623 to 155223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,370 DEBUG Processing 128/738 atomic regions from SNP 38227 to 38828 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,460 DEBUG Processing 209/752 atomic regions from SNP 62457 to 63057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,472 DEBUG Processing 175/708 atomic regions from SNP 52224 to 52824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,571 DEBUG Processing 129/738 atomic regions from SNP 38528 to 39129 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,593 DEBUG Processing 517/862 atomic regions from SNP 154923 to 155523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,659 DEBUG Processing 210/752 atomic regions from SNP 62757 to 63357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,665 DEBUG Processing 176/708 atomic regions from SNP 52524 to 53124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,773 DEBUG Processing 130/738 atomic regions from SNP 38829 to 39430 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,821 DEBUG Processing 518/862 atomic regions from SNP 155223 to 155823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,861 DEBUG Processing 211/752 atomic regions from SNP 63057 to 63657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,872 DEBUG Processing 177/708 atomic regions from SNP 52824 to 53424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,974 DEBUG Processing 131/738 atomic regions from SNP 39130 to 39731 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,050 DEBUG Processing 519/862 atomic regions from SNP 155523 to 156123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,062 DEBUG Processing 212/752 atomic regions from SNP 63357 to 63957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,086 DEBUG Processing 178/708 atomic regions from SNP 53124 to 53724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,175 DEBUG Processing 132/738 atomic regions from SNP 39431 to 40032 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,262 DEBUG Processing 213/752 atomic regions from SNP 63657 to 64257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,278 DEBUG Processing 520/862 atomic regions from SNP 155823 to 156423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,281 DEBUG Processing 179/708 atomic regions from SNP 53424 to 54024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,396 DEBUG Processing 133/738 atomic regions from SNP 39732 to 40333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,476 DEBUG Processing 214/752 atomic regions from SNP 63957 to 64557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,490 DEBUG Processing 180/708 atomic regions from SNP 53724 to 54324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,506 DEBUG Processing 521/862 atomic regions from SNP 156123 to 156723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,643 DEBUG Processing 134/738 atomic regions from SNP 40033 to 40634 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,688 DEBUG Processing 181/708 atomic regions from SNP 54024 to 54624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,701 DEBUG Processing 215/752 atomic regions from SNP 64257 to 64857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,739 DEBUG Processing 522/862 atomic regions from SNP 156423 to 157023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,873 DEBUG Processing 135/738 atomic regions from SNP 40334 to 40935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,887 DEBUG Processing 182/708 atomic regions from SNP 54324 to 54924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,915 DEBUG Processing 216/752 atomic regions from SNP 64557 to 65157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,962 DEBUG Processing 523/862 atomic regions from SNP 156723 to 157323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,082 DEBUG Processing 136/738 atomic regions from SNP 40635 to 41236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,087 DEBUG Processing 183/708 atomic regions from SNP 54624 to 55224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,126 DEBUG Processing 217/752 atomic regions from SNP 64857 to 65457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,173 DEBUG Processing 524/862 atomic regions from SNP 157023 to 157623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,285 DEBUG Processing 184/708 atomic regions from SNP 54924 to 55524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,288 DEBUG Processing 137/738 atomic regions from SNP 40936 to 41537 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,359 DEBUG Processing 218/752 atomic regions from SNP 65157 to 65757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,384 DEBUG Processing 525/862 atomic regions from SNP 157323 to 157923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,484 DEBUG Processing 185/708 atomic regions from SNP 55224 to 55824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,492 DEBUG Processing 138/738 atomic regions from SNP 41237 to 41838 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,593 DEBUG Processing 526/862 atomic regions from SNP 157623 to 158223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,596 DEBUG Processing 219/752 atomic regions from SNP 65457 to 66057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,683 DEBUG Processing 186/708 atomic regions from SNP 55524 to 56124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,694 DEBUG Processing 139/738 atomic regions from SNP 41538 to 42139 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,804 DEBUG Processing 527/862 atomic regions from SNP 157923 to 158523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,806 DEBUG Processing 220/752 atomic regions from SNP 65757 to 66357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,882 DEBUG Processing 187/708 atomic regions from SNP 55824 to 56424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,897 DEBUG Processing 140/738 atomic regions from SNP 41839 to 42440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,008 DEBUG Processing 221/752 atomic regions from SNP 66057 to 66657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,015 DEBUG Processing 528/862 atomic regions from SNP 158223 to 158823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,081 DEBUG Processing 188/708 atomic regions from SNP 56124 to 56724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,098 DEBUG Processing 141/738 atomic regions from SNP 42140 to 42741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,209 DEBUG Processing 222/752 atomic regions from SNP 66357 to 66957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,223 DEBUG Processing 529/862 atomic regions from SNP 158523 to 159123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,280 DEBUG Processing 189/708 atomic regions from SNP 56424 to 57024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,298 DEBUG Processing 142/738 atomic regions from SNP 42441 to 43042 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,414 DEBUG Processing 223/752 atomic regions from SNP 66657 to 67257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,434 DEBUG Processing 530/862 atomic regions from SNP 158823 to 159423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,479 DEBUG Processing 190/708 atomic regions from SNP 56724 to 57324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,505 DEBUG Processing 143/738 atomic regions from SNP 42742 to 43343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,623 DEBUG Processing 224/752 atomic regions from SNP 66957 to 67557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,649 DEBUG Processing 531/862 atomic regions from SNP 159123 to 159723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,680 DEBUG Processing 191/708 atomic regions from SNP 57024 to 57624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,710 DEBUG Processing 144/738 atomic regions from SNP 43043 to 43644 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,840 DEBUG Processing 225/752 atomic regions from SNP 67257 to 67857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,857 DEBUG Processing 532/862 atomic regions from SNP 159423 to 160023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,874 DEBUG Processing 192/708 atomic regions from SNP 57324 to 57924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,911 DEBUG Processing 145/738 atomic regions from SNP 43344 to 43945 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,066 DEBUG Processing 226/752 atomic regions from SNP 67557 to 68157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,068 DEBUG Processing 533/862 atomic regions from SNP 159723 to 160323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,069 DEBUG Processing 193/708 atomic regions from SNP 57624 to 58224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,116 DEBUG Processing 146/738 atomic regions from SNP 43645 to 44246 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,269 DEBUG Processing 194/708 atomic regions from SNP 57924 to 58524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,280 DEBUG Processing 534/862 atomic regions from SNP 160023 to 160623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,285 DEBUG Processing 227/752 atomic regions from SNP 67857 to 68457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,323 DEBUG Processing 147/738 atomic regions from SNP 43946 to 44547 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,472 DEBUG Processing 195/708 atomic regions from SNP 58224 to 58824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,499 DEBUG Processing 535/862 atomic regions from SNP 160323 to 160923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,510 DEBUG Processing 228/752 atomic regions from SNP 68157 to 68757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,532 DEBUG Processing 148/738 atomic regions from SNP 44247 to 44848 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,677 DEBUG Processing 196/708 atomic regions from SNP 58524 to 59124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,719 DEBUG Processing 536/862 atomic regions from SNP 160623 to 161223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,737 DEBUG Processing 229/752 atomic regions from SNP 68457 to 69057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,743 DEBUG Processing 149/738 atomic regions from SNP 44548 to 45149 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,883 DEBUG Processing 197/708 atomic regions from SNP 58824 to 59424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,938 DEBUG Processing 537/862 atomic regions from SNP 160923 to 161523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,957 DEBUG Processing 230/752 atomic regions from SNP 68757 to 69357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,960 DEBUG Processing 150/738 atomic regions from SNP 44849 to 45450 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,090 DEBUG Processing 198/708 atomic regions from SNP 59124 to 59724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,168 DEBUG Processing 538/862 atomic regions from SNP 161223 to 161823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,171 DEBUG Processing 151/738 atomic regions from SNP 45150 to 45751 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,189 DEBUG Processing 231/752 atomic regions from SNP 69057 to 69657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,292 DEBUG Processing 199/708 atomic regions from SNP 59424 to 60024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,377 DEBUG Processing 152/738 atomic regions from SNP 45451 to 46052 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,406 DEBUG Processing 539/862 atomic regions from SNP 161523 to 162123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,420 DEBUG Processing 232/752 atomic regions from SNP 69357 to 69957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,492 DEBUG Processing 200/708 atomic regions from SNP 59724 to 60324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,585 DEBUG Processing 153/738 atomic regions from SNP 45752 to 46353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,633 DEBUG Processing 540/862 atomic regions from SNP 161823 to 162423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,653 DEBUG Processing 233/752 atomic regions from SNP 69657 to 70257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,694 DEBUG Processing 201/708 atomic regions from SNP 60024 to 60624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,788 DEBUG Processing 154/738 atomic regions from SNP 46053 to 46654 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,857 DEBUG Processing 541/862 atomic regions from SNP 162123 to 162723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,863 DEBUG Processing 234/752 atomic regions from SNP 69957 to 70557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,895 DEBUG Processing 202/708 atomic regions from SNP 60324 to 60924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,991 DEBUG Processing 155/738 atomic regions from SNP 46354 to 46955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,067 DEBUG Processing 235/752 atomic regions from SNP 70257 to 70857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,068 DEBUG Processing 542/862 atomic regions from SNP 162423 to 163023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,095 DEBUG Processing 203/708 atomic regions from SNP 60624 to 61224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,193 DEBUG Processing 156/738 atomic regions from SNP 46655 to 47256 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,269 DEBUG Processing 236/752 atomic regions from SNP 70557 to 71157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,280 DEBUG Processing 543/862 atomic regions from SNP 162723 to 163323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,297 DEBUG Processing 204/708 atomic regions from SNP 60924 to 61524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,396 DEBUG Processing 157/738 atomic regions from SNP 46956 to 47557 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,474 DEBUG Processing 237/752 atomic regions from SNP 70857 to 71457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,493 DEBUG Processing 544/862 atomic regions from SNP 163023 to 163623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,496 DEBUG Processing 205/708 atomic regions from SNP 61224 to 61824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,599 DEBUG Processing 158/738 atomic regions from SNP 47257 to 47858 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,687 DEBUG Processing 238/752 atomic regions from SNP 71157 to 71757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,697 DEBUG Processing 206/708 atomic regions from SNP 61524 to 62124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,706 DEBUG Processing 545/862 atomic regions from SNP 163323 to 163923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,797 DEBUG Processing 159/738 atomic regions from SNP 47558 to 48159 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,898 DEBUG Processing 207/708 atomic regions from SNP 61824 to 62424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,919 DEBUG Processing 546/862 atomic regions from SNP 163623 to 164223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,920 DEBUG Processing 239/752 atomic regions from SNP 71457 to 72057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,996 DEBUG Processing 160/738 atomic regions from SNP 47859 to 48460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,097 DEBUG Processing 208/708 atomic regions from SNP 62124 to 62724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,134 DEBUG Processing 547/862 atomic regions from SNP 163923 to 164523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,145 DEBUG Processing 240/752 atomic regions from SNP 71757 to 72357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,195 DEBUG Processing 161/738 atomic regions from SNP 48160 to 48761 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,294 DEBUG Processing 209/708 atomic regions from SNP 62424 to 63024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,348 DEBUG Processing 548/862 atomic regions from SNP 164223 to 164823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,355 DEBUG Processing 241/752 atomic regions from SNP 72057 to 72657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,395 DEBUG Processing 162/738 atomic regions from SNP 48461 to 49062 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,488 DEBUG Processing 210/708 atomic regions from SNP 62724 to 63324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,561 DEBUG Processing 549/862 atomic regions from SNP 164523 to 165123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,561 DEBUG Processing 242/752 atomic regions from SNP 72357 to 72957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,597 DEBUG Processing 163/738 atomic regions from SNP 48762 to 49363 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,686 DEBUG Processing 211/708 atomic regions from SNP 63024 to 63624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,764 DEBUG Processing 243/752 atomic regions from SNP 72657 to 73257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,775 DEBUG Processing 550/862 atomic regions from SNP 164823 to 165423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,800 DEBUG Processing 164/738 atomic regions from SNP 49063 to 49664 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,881 DEBUG Processing 212/708 atomic regions from SNP 63324 to 63924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,967 DEBUG Processing 244/752 atomic regions from SNP 72957 to 73557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,986 DEBUG Processing 551/862 atomic regions from SNP 165123 to 165723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,003 DEBUG Processing 165/738 atomic regions from SNP 49364 to 49965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,077 DEBUG Processing 213/708 atomic regions from SNP 63624 to 64224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,170 DEBUG Processing 245/752 atomic regions from SNP 73257 to 73857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,198 DEBUG Processing 552/862 atomic regions from SNP 165423 to 166023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,208 DEBUG Processing 166/738 atomic regions from SNP 49665 to 50266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,273 DEBUG Processing 214/708 atomic regions from SNP 63924 to 64524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,370 DEBUG Processing 246/752 atomic regions from SNP 73557 to 74157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,408 DEBUG Processing 167/738 atomic regions from SNP 49966 to 50567 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,416 DEBUG Processing 553/862 atomic regions from SNP 165723 to 166323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,470 DEBUG Processing 215/708 atomic regions from SNP 64224 to 64824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,567 DEBUG Processing 247/752 atomic regions from SNP 73857 to 74457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,609 DEBUG Processing 168/738 atomic regions from SNP 50267 to 50868 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,650 DEBUG Processing 554/862 atomic regions from SNP 166023 to 166623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,666 DEBUG Processing 216/708 atomic regions from SNP 64524 to 65124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,766 DEBUG Processing 248/752 atomic regions from SNP 74157 to 74757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,810 DEBUG Processing 169/738 atomic regions from SNP 50568 to 51169 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,861 DEBUG Processing 555/862 atomic regions from SNP 166323 to 166923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,863 DEBUG Processing 217/708 atomic regions from SNP 64824 to 65424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,971 DEBUG Processing 249/752 atomic regions from SNP 74457 to 75057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,011 DEBUG Processing 170/738 atomic regions from SNP 50869 to 51470 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,061 DEBUG Processing 218/708 atomic regions from SNP 65124 to 65724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,074 DEBUG Processing 556/862 atomic regions from SNP 166623 to 167223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,170 DEBUG Processing 250/752 atomic regions from SNP 74757 to 75357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,217 DEBUG Processing 171/738 atomic regions from SNP 51170 to 51771 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,277 DEBUG Processing 219/708 atomic regions from SNP 65424 to 66024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,285 DEBUG Processing 557/862 atomic regions from SNP 166923 to 167523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,368 DEBUG Processing 251/752 atomic regions from SNP 75057 to 75657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,436 DEBUG Processing 172/738 atomic regions from SNP 51471 to 52072 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,495 DEBUG Processing 558/862 atomic regions from SNP 167223 to 167823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,503 DEBUG Processing 220/708 atomic regions from SNP 65724 to 66324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,564 DEBUG Processing 252/752 atomic regions from SNP 75357 to 75957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,651 DEBUG Processing 173/738 atomic regions from SNP 51772 to 52373 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,704 DEBUG Processing 559/862 atomic regions from SNP 167523 to 168123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,709 DEBUG Processing 221/708 atomic regions from SNP 66024 to 66624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,762 DEBUG Processing 253/752 atomic regions from SNP 75657 to 76257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,871 DEBUG Processing 174/738 atomic regions from SNP 52073 to 52674 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,907 DEBUG Processing 222/708 atomic regions from SNP 66324 to 66924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,916 DEBUG Processing 560/862 atomic regions from SNP 167823 to 168423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,958 DEBUG Processing 254/752 atomic regions from SNP 75957 to 76557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,075 DEBUG Processing 175/738 atomic regions from SNP 52374 to 52975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,106 DEBUG Processing 223/708 atomic regions from SNP 66624 to 67224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,129 DEBUG Processing 561/862 atomic regions from SNP 168123 to 168723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,156 DEBUG Processing 255/752 atomic regions from SNP 76257 to 76857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,279 DEBUG Processing 176/738 atomic regions from SNP 52675 to 53276 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,305 DEBUG Processing 224/708 atomic regions from SNP 66924 to 67524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,348 DEBUG Processing 562/862 atomic regions from SNP 168423 to 169023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,354 DEBUG Processing 256/752 atomic regions from SNP 76557 to 77157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,477 DEBUG Processing 177/738 atomic regions from SNP 52976 to 53577 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,501 DEBUG Processing 225/708 atomic regions from SNP 67224 to 67824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,551 DEBUG Processing 257/752 atomic regions from SNP 76857 to 77457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,560 DEBUG Processing 563/862 atomic regions from SNP 168723 to 169323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,677 DEBUG Processing 178/738 atomic regions from SNP 53277 to 53878 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,700 DEBUG Processing 226/708 atomic regions from SNP 67524 to 68124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,748 DEBUG Processing 258/752 atomic regions from SNP 77157 to 77757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,774 DEBUG Processing 564/862 atomic regions from SNP 169023 to 169623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,875 DEBUG Processing 179/738 atomic regions from SNP 53578 to 54179 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,897 DEBUG Processing 227/708 atomic regions from SNP 67824 to 68424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,946 DEBUG Processing 259/752 atomic regions from SNP 77457 to 78057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,986 DEBUG Processing 565/862 atomic regions from SNP 169323 to 169923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,075 DEBUG Processing 180/738 atomic regions from SNP 53879 to 54480 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,098 DEBUG Processing 228/708 atomic regions from SNP 68124 to 68724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,142 DEBUG Processing 260/752 atomic regions from SNP 77757 to 78357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,198 DEBUG Processing 566/862 atomic regions from SNP 169623 to 170223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,276 DEBUG Processing 181/738 atomic regions from SNP 54180 to 54781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,298 DEBUG Processing 229/708 atomic regions from SNP 68424 to 69024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,342 DEBUG Processing 261/752 atomic regions from SNP 78057 to 78657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,411 DEBUG Processing 567/862 atomic regions from SNP 169923 to 170523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,477 DEBUG Processing 182/738 atomic regions from SNP 54481 to 55082 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,500 DEBUG Processing 230/708 atomic regions from SNP 68724 to 69324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,542 DEBUG Processing 262/752 atomic regions from SNP 78357 to 78957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,625 DEBUG Processing 568/862 atomic regions from SNP 170223 to 170823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,679 DEBUG Processing 183/738 atomic regions from SNP 54782 to 55383 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,703 DEBUG Processing 231/708 atomic regions from SNP 69024 to 69624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,744 DEBUG Processing 263/752 atomic regions from SNP 78657 to 79257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,843 DEBUG Processing 569/862 atomic regions from SNP 170523 to 171123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,888 DEBUG Processing 184/738 atomic regions from SNP 55083 to 55684 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,915 DEBUG Processing 232/708 atomic regions from SNP 69324 to 69924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,945 DEBUG Processing 264/752 atomic regions from SNP 78957 to 79557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,056 DEBUG Processing 570/862 atomic regions from SNP 170823 to 171423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,088 DEBUG Processing 185/738 atomic regions from SNP 55384 to 55985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,134 DEBUG Processing 233/708 atomic regions from SNP 69624 to 70224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,146 DEBUG Processing 265/752 atomic regions from SNP 79257 to 79857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,270 DEBUG Processing 571/862 atomic regions from SNP 171123 to 171723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,290 DEBUG Processing 186/738 atomic regions from SNP 55685 to 56286 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,344 DEBUG Processing 234/708 atomic regions from SNP 69924 to 70524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,347 DEBUG Processing 266/752 atomic regions from SNP 79557 to 80157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,486 DEBUG Processing 572/862 atomic regions from SNP 171423 to 172023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,503 DEBUG Processing 187/738 atomic regions from SNP 55986 to 56587 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,547 DEBUG Processing 235/708 atomic regions from SNP 70224 to 70824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,551 DEBUG Processing 267/752 atomic regions from SNP 79857 to 80457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,699 DEBUG Processing 573/862 atomic regions from SNP 171723 to 172323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,730 DEBUG Processing 188/738 atomic regions from SNP 56287 to 56888 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,751 DEBUG Processing 236/708 atomic regions from SNP 70524 to 71124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,754 DEBUG Processing 268/752 atomic regions from SNP 80157 to 80757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,912 DEBUG Processing 574/862 atomic regions from SNP 172023 to 172623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,935 DEBUG Processing 189/738 atomic regions from SNP 56588 to 57189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,950 DEBUG Processing 237/708 atomic regions from SNP 70824 to 71424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,955 DEBUG Processing 269/752 atomic regions from SNP 80457 to 81057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,127 DEBUG Processing 575/862 atomic regions from SNP 172323 to 172923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,140 DEBUG Processing 190/738 atomic regions from SNP 56889 to 57490 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,153 DEBUG Processing 238/708 atomic regions from SNP 71124 to 71724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,160 DEBUG Processing 270/752 atomic regions from SNP 80757 to 81357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,342 DEBUG Processing 576/862 atomic regions from SNP 172623 to 173223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,345 DEBUG Processing 191/738 atomic regions from SNP 57190 to 57791 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,365 DEBUG Processing 271/752 atomic regions from SNP 81057 to 81657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,371 DEBUG Processing 239/708 atomic regions from SNP 71424 to 72024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,556 DEBUG Processing 192/738 atomic regions from SNP 57491 to 58092 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,560 DEBUG Processing 577/862 atomic regions from SNP 172923 to 173523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,576 DEBUG Processing 272/752 atomic regions from SNP 81357 to 81957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,590 DEBUG Processing 240/708 atomic regions from SNP 71724 to 72324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,767 DEBUG Processing 193/738 atomic regions from SNP 57792 to 58393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,778 DEBUG Processing 578/862 atomic regions from SNP 173223 to 173823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,787 DEBUG Processing 273/752 atomic regions from SNP 81657 to 82257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,797 DEBUG Processing 241/708 atomic regions from SNP 72024 to 72624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,981 DEBUG Processing 194/738 atomic regions from SNP 58093 to 58694 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,996 DEBUG Processing 579/862 atomic regions from SNP 173523 to 174123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,999 DEBUG Processing 274/752 atomic regions from SNP 81957 to 82557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,002 DEBUG Processing 242/708 atomic regions from SNP 72324 to 72924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,188 DEBUG Processing 195/738 atomic regions from SNP 58394 to 58995 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,204 DEBUG Processing 275/752 atomic regions from SNP 82257 to 82857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,206 DEBUG Processing 243/708 atomic regions from SNP 72624 to 73224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,216 DEBUG Processing 580/862 atomic regions from SNP 173823 to 174423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,394 DEBUG Processing 196/738 atomic regions from SNP 58695 to 59296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,406 DEBUG Processing 276/752 atomic regions from SNP 82557 to 83157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,426 DEBUG Processing 244/708 atomic regions from SNP 72924 to 73524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,431 DEBUG Processing 581/862 atomic regions from SNP 174123 to 174723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,595 DEBUG Processing 197/738 atomic regions from SNP 58996 to 59597 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,609 DEBUG Processing 277/752 atomic regions from SNP 82857 to 83457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,641 DEBUG Processing 245/708 atomic regions from SNP 73224 to 73824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,648 DEBUG Processing 582/862 atomic regions from SNP 174423 to 175023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,798 DEBUG Processing 198/738 atomic regions from SNP 59297 to 59898 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,812 DEBUG Processing 278/752 atomic regions from SNP 83157 to 83757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,843 DEBUG Processing 246/708 atomic regions from SNP 73524 to 74124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,864 DEBUG Processing 583/862 atomic regions from SNP 174723 to 175323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,999 DEBUG Processing 199/738 atomic regions from SNP 59598 to 60199 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,012 DEBUG Processing 279/752 atomic regions from SNP 83457 to 84057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,041 DEBUG Processing 247/708 atomic regions from SNP 73824 to 74424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,077 DEBUG Processing 584/862 atomic regions from SNP 175023 to 175623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,200 DEBUG Processing 200/738 atomic regions from SNP 59899 to 60500 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,213 DEBUG Processing 280/752 atomic regions from SNP 83757 to 84357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,239 DEBUG Processing 248/708 atomic regions from SNP 74124 to 74724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,289 DEBUG Processing 585/862 atomic regions from SNP 175323 to 175923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,401 DEBUG Processing 201/738 atomic regions from SNP 60200 to 60801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,422 DEBUG Processing 281/752 atomic regions from SNP 84057 to 84657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,443 DEBUG Processing 249/708 atomic regions from SNP 74424 to 75024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,505 DEBUG Processing 586/862 atomic regions from SNP 175623 to 176223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,603 DEBUG Processing 202/738 atomic regions from SNP 60501 to 61102 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,621 DEBUG Processing 282/752 atomic regions from SNP 84357 to 84957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,640 DEBUG Processing 250/708 atomic regions from SNP 74724 to 75324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,715 DEBUG Processing 587/862 atomic regions from SNP 175923 to 176523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,802 DEBUG Processing 203/738 atomic regions from SNP 60802 to 61403 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,821 DEBUG Processing 283/752 atomic regions from SNP 84657 to 85257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,834 DEBUG Processing 251/708 atomic regions from SNP 75024 to 75624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,923 DEBUG Processing 588/862 atomic regions from SNP 176223 to 176823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,003 DEBUG Processing 204/738 atomic regions from SNP 61103 to 61704 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,020 DEBUG Processing 284/752 atomic regions from SNP 84957 to 85557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,030 DEBUG Processing 252/708 atomic regions from SNP 75324 to 75924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,130 DEBUG Processing 589/862 atomic regions from SNP 176523 to 177123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,204 DEBUG Processing 205/738 atomic regions from SNP 61404 to 62005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,221 DEBUG Processing 285/752 atomic regions from SNP 85257 to 85857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,228 DEBUG Processing 253/708 atomic regions from SNP 75624 to 76224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,338 DEBUG Processing 590/862 atomic regions from SNP 176823 to 177423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,403 DEBUG Processing 206/738 atomic regions from SNP 61705 to 62306 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,421 DEBUG Processing 286/752 atomic regions from SNP 85557 to 86157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,426 DEBUG Processing 254/708 atomic regions from SNP 75924 to 76524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,552 DEBUG Processing 591/862 atomic regions from SNP 177123 to 177723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,606 DEBUG Processing 207/738 atomic regions from SNP 62006 to 62607 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,623 DEBUG Processing 287/752 atomic regions from SNP 85857 to 86457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,627 DEBUG Processing 255/708 atomic regions from SNP 76224 to 76824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,766 DEBUG Processing 592/862 atomic regions from SNP 177423 to 178023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,810 DEBUG Processing 208/738 atomic regions from SNP 62307 to 62908 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,824 DEBUG Processing 288/752 atomic regions from SNP 86157 to 86757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,830 DEBUG Processing 256/708 atomic regions from SNP 76524 to 77124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,982 DEBUG Processing 593/862 atomic regions from SNP 177723 to 178323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,013 DEBUG Processing 209/738 atomic regions from SNP 62608 to 63209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,026 DEBUG Processing 289/752 atomic regions from SNP 86457 to 87057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,034 DEBUG Processing 257/708 atomic regions from SNP 76824 to 77424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,199 DEBUG Processing 594/862 atomic regions from SNP 178023 to 178623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,216 DEBUG Processing 210/738 atomic regions from SNP 62909 to 63510 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,229 DEBUG Processing 290/752 atomic regions from SNP 86757 to 87357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,237 DEBUG Processing 258/708 atomic regions from SNP 77124 to 77724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,415 DEBUG Processing 595/862 atomic regions from SNP 178323 to 178923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,421 DEBUG Processing 211/738 atomic regions from SNP 63210 to 63811 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,434 DEBUG Processing 291/752 atomic regions from SNP 87057 to 87657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,440 DEBUG Processing 259/708 atomic regions from SNP 77424 to 78024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,627 DEBUG Processing 212/738 atomic regions from SNP 63511 to 64112 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,628 DEBUG Processing 596/862 atomic regions from SNP 178623 to 179223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,639 DEBUG Processing 292/752 atomic regions from SNP 87357 to 87957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,639 DEBUG Processing 260/708 atomic regions from SNP 77724 to 78324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,832 DEBUG Processing 213/738 atomic regions from SNP 63812 to 64413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,838 DEBUG Processing 261/708 atomic regions from SNP 78024 to 78624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,840 DEBUG Processing 597/862 atomic regions from SNP 178923 to 179523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,844 DEBUG Processing 293/752 atomic regions from SNP 87657 to 88257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,037 DEBUG Processing 262/708 atomic regions from SNP 78324 to 78924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,038 DEBUG Processing 214/738 atomic regions from SNP 64113 to 64714 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,049 DEBUG Processing 294/752 atomic regions from SNP 87957 to 88557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,054 DEBUG Processing 598/862 atomic regions from SNP 179223 to 179823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,235 DEBUG Processing 263/708 atomic regions from SNP 78624 to 79224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,245 DEBUG Processing 215/738 atomic regions from SNP 64414 to 65015 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,254 DEBUG Processing 295/752 atomic regions from SNP 88257 to 88857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,267 DEBUG Processing 599/862 atomic regions from SNP 179523 to 180123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,431 DEBUG Processing 264/708 atomic regions from SNP 78924 to 79524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,450 DEBUG Processing 216/738 atomic regions from SNP 64715 to 65316 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,468 DEBUG Processing 296/752 atomic regions from SNP 88557 to 89157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,479 DEBUG Processing 600/862 atomic regions from SNP 179823 to 180423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,627 DEBUG Processing 265/708 atomic regions from SNP 79224 to 79824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,654 DEBUG Processing 217/738 atomic regions from SNP 65016 to 65617 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,685 DEBUG Processing 297/752 atomic regions from SNP 88857 to 89457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,690 DEBUG Processing 601/862 atomic regions from SNP 180123 to 180723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,819 DEBUG Processing 266/708 atomic regions from SNP 79524 to 80124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,857 DEBUG Processing 218/738 atomic regions from SNP 65317 to 65918 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,888 DEBUG Processing 298/752 atomic regions from SNP 89157 to 89757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,900 DEBUG Processing 602/862 atomic regions from SNP 180423 to 181023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,012 DEBUG Processing 267/708 atomic regions from SNP 79824 to 80424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,061 DEBUG Processing 219/738 atomic regions from SNP 65618 to 66219 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,094 DEBUG Processing 299/752 atomic regions from SNP 89457 to 90057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,110 DEBUG Processing 603/862 atomic regions from SNP 180723 to 181323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,205 DEBUG Processing 268/708 atomic regions from SNP 80124 to 80724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,266 DEBUG Processing 220/738 atomic regions from SNP 65919 to 66520 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,299 DEBUG Processing 300/752 atomic regions from SNP 89757 to 90357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,322 DEBUG Processing 604/862 atomic regions from SNP 181023 to 181623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,398 DEBUG Processing 269/708 atomic regions from SNP 80424 to 81024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,468 DEBUG Processing 221/738 atomic regions from SNP 66220 to 66821 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,499 DEBUG Processing 301/752 atomic regions from SNP 90057 to 90657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,532 DEBUG Processing 605/862 atomic regions from SNP 181323 to 181923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,591 DEBUG Processing 270/708 atomic regions from SNP 80724 to 81324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,668 DEBUG Processing 222/738 atomic regions from SNP 66521 to 67122 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,699 DEBUG Processing 302/752 atomic regions from SNP 90357 to 90957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,743 DEBUG Processing 606/862 atomic regions from SNP 181623 to 182223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,786 DEBUG Processing 271/708 atomic regions from SNP 81024 to 81624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,869 DEBUG Processing 223/738 atomic regions from SNP 66822 to 67423 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,897 DEBUG Processing 303/752 atomic regions from SNP 90657 to 91257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,956 DEBUG Processing 607/862 atomic regions from SNP 181923 to 182523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,983 DEBUG Processing 272/708 atomic regions from SNP 81324 to 81924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,071 DEBUG Processing 224/738 atomic regions from SNP 67123 to 67724 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,101 DEBUG Processing 304/752 atomic regions from SNP 90957 to 91557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,172 DEBUG Processing 608/862 atomic regions from SNP 182223 to 182823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,183 DEBUG Processing 273/708 atomic regions from SNP 81624 to 82224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,276 DEBUG Processing 225/738 atomic regions from SNP 67424 to 68025 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,306 DEBUG Processing 305/752 atomic regions from SNP 91257 to 91857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,382 DEBUG Processing 274/708 atomic regions from SNP 81924 to 82524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,384 DEBUG Processing 609/862 atomic regions from SNP 182523 to 183123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,485 DEBUG Processing 226/738 atomic regions from SNP 67725 to 68326 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,515 DEBUG Processing 306/752 atomic regions from SNP 91557 to 92157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,587 DEBUG Processing 275/708 atomic regions from SNP 82224 to 82824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,603 DEBUG Processing 610/862 atomic regions from SNP 182823 to 183423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,690 DEBUG Processing 227/738 atomic regions from SNP 68026 to 68627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,722 DEBUG Processing 307/752 atomic regions from SNP 91857 to 92457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,790 DEBUG Processing 276/708 atomic regions from SNP 82524 to 83124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,821 DEBUG Processing 611/862 atomic regions from SNP 183123 to 183723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,895 DEBUG Processing 228/738 atomic regions from SNP 68327 to 68928 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,925 DEBUG Processing 308/752 atomic regions from SNP 92157 to 92757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,993 DEBUG Processing 277/708 atomic regions from SNP 82824 to 83424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,036 DEBUG Processing 612/862 atomic regions from SNP 183423 to 184023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,099 DEBUG Processing 229/738 atomic regions from SNP 68628 to 69229 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,127 DEBUG Processing 309/752 atomic regions from SNP 92457 to 93057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,220 DEBUG Processing 278/708 atomic regions from SNP 83124 to 83724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,252 DEBUG Processing 613/862 atomic regions from SNP 183723 to 184323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,303 DEBUG Processing 230/738 atomic regions from SNP 68929 to 69530 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,328 DEBUG Processing 310/752 atomic regions from SNP 92757 to 93357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,436 DEBUG Processing 279/708 atomic regions from SNP 83424 to 84024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,467 DEBUG Processing 614/862 atomic regions from SNP 184023 to 184623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,509 DEBUG Processing 231/738 atomic regions from SNP 69230 to 69831 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,533 DEBUG Processing 311/752 atomic regions from SNP 93057 to 93657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,636 DEBUG Processing 280/708 atomic regions from SNP 83724 to 84324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,682 DEBUG Processing 615/862 atomic regions from SNP 184323 to 184923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,719 DEBUG Processing 232/738 atomic regions from SNP 69531 to 70132 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,743 DEBUG Processing 312/752 atomic regions from SNP 93357 to 93957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,834 DEBUG Processing 281/708 atomic regions from SNP 84024 to 84624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,895 DEBUG Processing 616/862 atomic regions from SNP 184623 to 185223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,922 DEBUG Processing 233/738 atomic regions from SNP 69832 to 70433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,945 DEBUG Processing 313/752 atomic regions from SNP 93657 to 94257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,031 DEBUG Processing 282/708 atomic regions from SNP 84324 to 84924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,111 DEBUG Processing 617/862 atomic regions from SNP 184923 to 185523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,128 DEBUG Processing 234/738 atomic regions from SNP 70133 to 70734 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,150 DEBUG Processing 314/752 atomic regions from SNP 93957 to 94557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,228 DEBUG Processing 283/708 atomic regions from SNP 84624 to 85224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,324 DEBUG Processing 618/862 atomic regions from SNP 185223 to 185823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,335 DEBUG Processing 235/738 atomic regions from SNP 70434 to 71035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,354 DEBUG Processing 315/752 atomic regions from SNP 94257 to 94857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,422 DEBUG Processing 284/708 atomic regions from SNP 84924 to 85524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,537 DEBUG Processing 619/862 atomic regions from SNP 185523 to 186123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,540 DEBUG Processing 236/738 atomic regions from SNP 70735 to 71336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,557 DEBUG Processing 316/752 atomic regions from SNP 94557 to 95157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,617 DEBUG Processing 285/708 atomic regions from SNP 85224 to 85824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,746 DEBUG Processing 237/738 atomic regions from SNP 71036 to 71637 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,753 DEBUG Processing 620/862 atomic regions from SNP 185823 to 186423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,762 DEBUG Processing 317/752 atomic regions from SNP 94857 to 95457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,816 DEBUG Processing 286/708 atomic regions from SNP 85524 to 86124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,953 DEBUG Processing 238/738 atomic regions from SNP 71337 to 71938 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,969 DEBUG Processing 621/862 atomic regions from SNP 186123 to 186723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,970 DEBUG Processing 318/752 atomic regions from SNP 95157 to 95757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,014 DEBUG Processing 287/708 atomic regions from SNP 85824 to 86424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,157 DEBUG Processing 239/738 atomic regions from SNP 71638 to 72239 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,174 DEBUG Processing 319/752 atomic regions from SNP 95457 to 96057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,187 DEBUG Processing 622/862 atomic regions from SNP 186423 to 187023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,218 DEBUG Processing 288/708 atomic regions from SNP 86124 to 86724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,361 DEBUG Processing 240/738 atomic regions from SNP 71939 to 72540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,378 DEBUG Processing 320/752 atomic regions from SNP 95757 to 96357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,402 DEBUG Processing 623/862 atomic regions from SNP 186723 to 187323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,418 DEBUG Processing 289/708 atomic regions from SNP 86424 to 87024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,565 DEBUG Processing 241/738 atomic regions from SNP 72240 to 72841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,582 DEBUG Processing 321/752 atomic regions from SNP 96057 to 96657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,620 DEBUG Processing 624/862 atomic regions from SNP 187023 to 187623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,624 DEBUG Processing 290/708 atomic regions from SNP 86724 to 87324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,770 DEBUG Processing 242/738 atomic regions from SNP 72541 to 73142 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,811 DEBUG Processing 322/752 atomic regions from SNP 96357 to 96957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,838 DEBUG Processing 625/862 atomic regions from SNP 187323 to 187923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,841 DEBUG Processing 291/708 atomic regions from SNP 87024 to 87624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,980 DEBUG Processing 243/738 atomic regions from SNP 72842 to 73443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,025 DEBUG Processing 323/752 atomic regions from SNP 96657 to 97257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,055 DEBUG Processing 626/862 atomic regions from SNP 187623 to 188223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,056 DEBUG Processing 292/708 atomic regions from SNP 87324 to 87924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,185 DEBUG Processing 244/738 atomic regions from SNP 73143 to 73744 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,230 DEBUG Processing 324/752 atomic regions from SNP 96957 to 97557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,261 DEBUG Processing 293/708 atomic regions from SNP 87624 to 88224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,274 DEBUG Processing 627/862 atomic regions from SNP 187923 to 188523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,408 DEBUG Processing 245/738 atomic regions from SNP 73444 to 74045 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,435 DEBUG Processing 325/752 atomic regions from SNP 97257 to 97857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,467 DEBUG Processing 294/708 atomic regions from SNP 87924 to 88524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,497 DEBUG Processing 628/862 atomic regions from SNP 188223 to 188823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,612 DEBUG Processing 246/738 atomic regions from SNP 73745 to 74346 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,636 DEBUG Processing 326/752 atomic regions from SNP 97557 to 98157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,672 DEBUG Processing 295/708 atomic regions from SNP 88224 to 88824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,717 DEBUG Processing 629/862 atomic regions from SNP 188523 to 189123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,829 DEBUG Processing 247/738 atomic regions from SNP 74046 to 74647 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,836 DEBUG Processing 327/752 atomic regions from SNP 97857 to 98457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,872 DEBUG Processing 296/708 atomic regions from SNP 88524 to 89124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,934 DEBUG Processing 630/862 atomic regions from SNP 188823 to 189423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,045 DEBUG Processing 248/738 atomic regions from SNP 74347 to 74948 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,056 DEBUG Processing 328/752 atomic regions from SNP 98157 to 98757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,071 DEBUG Processing 297/708 atomic regions from SNP 88824 to 89424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,150 DEBUG Processing 631/862 atomic regions from SNP 189123 to 189723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,260 DEBUG Processing 249/738 atomic regions from SNP 74648 to 75249 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,272 DEBUG Processing 329/752 atomic regions from SNP 98457 to 99057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,280 DEBUG Processing 298/708 atomic regions from SNP 89124 to 89724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,366 DEBUG Processing 632/862 atomic regions from SNP 189423 to 190023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,474 DEBUG Processing 250/738 atomic regions from SNP 74949 to 75550 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,479 DEBUG Processing 330/752 atomic regions from SNP 98757 to 99357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,485 DEBUG Processing 299/708 atomic regions from SNP 89424 to 90024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,584 DEBUG Processing 633/862 atomic regions from SNP 189723 to 190323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,675 DEBUG Processing 251/738 atomic regions from SNP 75250 to 75851 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,685 DEBUG Processing 300/708 atomic regions from SNP 89724 to 90324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,693 DEBUG Processing 331/752 atomic regions from SNP 99057 to 99657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,797 DEBUG Processing 634/862 atomic regions from SNP 190023 to 190623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,877 DEBUG Processing 252/738 atomic regions from SNP 75551 to 76152 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,881 DEBUG Processing 301/708 atomic regions from SNP 90024 to 90624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,926 DEBUG Processing 332/752 atomic regions from SNP 99357 to 99957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,015 DEBUG Processing 635/862 atomic regions from SNP 190323 to 190923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,080 DEBUG Processing 302/708 atomic regions from SNP 90324 to 90924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,086 DEBUG Processing 253/738 atomic regions from SNP 75852 to 76453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,155 DEBUG Processing 333/752 atomic regions from SNP 99657 to 100257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,230 DEBUG Processing 636/862 atomic regions from SNP 190623 to 191223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,279 DEBUG Processing 303/708 atomic regions from SNP 90624 to 91224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,318 DEBUG Processing 254/738 atomic regions from SNP 76153 to 76754 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,378 DEBUG Processing 334/752 atomic regions from SNP 99957 to 100557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,446 DEBUG Processing 637/862 atomic regions from SNP 190923 to 191523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,478 DEBUG Processing 304/708 atomic regions from SNP 90924 to 91524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,529 DEBUG Processing 255/738 atomic regions from SNP 76454 to 77055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,598 DEBUG Processing 335/752 atomic regions from SNP 100257 to 100857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,676 DEBUG Processing 638/862 atomic regions from SNP 191223 to 191823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,686 DEBUG Processing 305/708 atomic regions from SNP 91224 to 91824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,736 DEBUG Processing 256/738 atomic regions from SNP 76755 to 77356 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,803 DEBUG Processing 336/752 atomic regions from SNP 100557 to 101157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,892 DEBUG Processing 306/708 atomic regions from SNP 91524 to 92124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,896 DEBUG Processing 639/862 atomic regions from SNP 191523 to 192123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,939 DEBUG Processing 257/738 atomic regions from SNP 77056 to 77657 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,005 DEBUG Processing 337/752 atomic regions from SNP 100857 to 101457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,095 DEBUG Processing 307/708 atomic regions from SNP 91824 to 92424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,115 DEBUG Processing 640/862 atomic regions from SNP 191823 to 192423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,139 DEBUG Processing 258/738 atomic regions from SNP 77357 to 77958 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,202 DEBUG Processing 338/752 atomic regions from SNP 101157 to 101757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,295 DEBUG Processing 308/708 atomic regions from SNP 92124 to 92724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,331 DEBUG Processing 641/862 atomic regions from SNP 192123 to 192723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,338 DEBUG Processing 259/738 atomic regions from SNP 77658 to 78259 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,401 DEBUG Processing 339/752 atomic regions from SNP 101457 to 102057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,497 DEBUG Processing 309/708 atomic regions from SNP 92424 to 93024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,539 DEBUG Processing 260/738 atomic regions from SNP 77959 to 78560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,546 DEBUG Processing 642/862 atomic regions from SNP 192423 to 193023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,606 DEBUG Processing 340/752 atomic regions from SNP 101757 to 102357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,707 DEBUG Processing 310/708 atomic regions from SNP 92724 to 93324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,740 DEBUG Processing 261/738 atomic regions from SNP 78260 to 78861 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,764 DEBUG Processing 643/862 atomic regions from SNP 192723 to 193323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,821 DEBUG Processing 341/752 atomic regions from SNP 102057 to 102657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,909 DEBUG Processing 311/708 atomic regions from SNP 93024 to 93624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,939 DEBUG Processing 262/738 atomic regions from SNP 78561 to 79162 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,978 DEBUG Processing 644/862 atomic regions from SNP 193023 to 193623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,048 DEBUG Processing 342/752 atomic regions from SNP 102357 to 102957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,130 DEBUG Processing 312/708 atomic regions from SNP 93324 to 93924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,139 DEBUG Processing 263/738 atomic regions from SNP 78862 to 79463 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,192 DEBUG Processing 645/862 atomic regions from SNP 193323 to 193923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,268 DEBUG Processing 343/752 atomic regions from SNP 102657 to 103257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,339 DEBUG Processing 264/738 atomic regions from SNP 79163 to 79764 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,347 DEBUG Processing 313/708 atomic regions from SNP 93624 to 94224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,403 DEBUG Processing 646/862 atomic regions from SNP 193623 to 194223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,484 DEBUG Processing 344/752 atomic regions from SNP 102957 to 103557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,538 DEBUG Processing 265/738 atomic regions from SNP 79464 to 80065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,554 DEBUG Processing 314/708 atomic regions from SNP 93924 to 94524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,631 DEBUG Processing 647/862 atomic regions from SNP 193923 to 194523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,686 DEBUG Processing 345/752 atomic regions from SNP 103257 to 103857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,718 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:49:49,737 DEBUG Processing 266/738 atomic regions from SNP 79765 to 80366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,766 DEBUG Processing 315/708 atomic regions from SNP 94224 to 94824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,874 DEBUG Processing 648/862 atomic regions from SNP 194223 to 194823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,900 DEBUG Processing 346/752 atomic regions from SNP 103557 to 104157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,939 DEBUG Processing 267/738 atomic regions from SNP 80066 to 80667 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,972 DEBUG Processing 316/708 atomic regions from SNP 94524 to 95124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,108 DEBUG Processing 649/862 atomic regions from SNP 194523 to 195123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,132 DEBUG Processing 347/752 atomic regions from SNP 103857 to 104457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,139 DEBUG Processing 268/738 atomic regions from SNP 80367 to 80968 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,194 DEBUG Processing 317/708 atomic regions from SNP 94824 to 95424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,343 DEBUG Processing 269/738 atomic regions from SNP 80668 to 81269 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,356 DEBUG Processing 650/862 atomic regions from SNP 194823 to 195423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,365 DEBUG Processing 348/752 atomic regions from SNP 104157 to 104757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,425 DEBUG Processing 318/708 atomic regions from SNP 95124 to 95724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,546 DEBUG Processing 270/738 atomic regions from SNP 80969 to 81570 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,594 DEBUG Processing 349/752 atomic regions from SNP 104457 to 105057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,600 DEBUG Processing 651/862 atomic regions from SNP 195123 to 195723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,662 DEBUG Processing 319/708 atomic regions from SNP 95424 to 96024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,747 DEBUG Processing 271/738 atomic regions from SNP 81270 to 81871 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,811 DEBUG Processing 350/752 atomic regions from SNP 104757 to 105357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,841 DEBUG Processing 652/862 atomic regions from SNP 195423 to 196023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,880 DEBUG Processing 320/708 atomic regions from SNP 95724 to 96324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,946 DEBUG Processing 272/738 atomic regions from SNP 81571 to 82172 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,034 DEBUG Processing 351/752 atomic regions from SNP 105057 to 105657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,063 DEBUG Processing 653/862 atomic regions from SNP 195723 to 196323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,081 DEBUG Processing 321/708 atomic regions from SNP 96024 to 96624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,145 DEBUG Processing 273/738 atomic regions from SNP 81872 to 82473 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,255 DEBUG Processing 352/752 atomic regions from SNP 105357 to 105957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,273 DEBUG Processing 654/862 atomic regions from SNP 196023 to 196623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,293 DEBUG Processing 322/708 atomic regions from SNP 96324 to 96924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,344 DEBUG Processing 274/738 atomic regions from SNP 82173 to 82774 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,473 DEBUG Processing 353/752 atomic regions from SNP 105657 to 106257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,483 DEBUG Processing 655/862 atomic regions from SNP 196323 to 196923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,513 DEBUG Processing 323/708 atomic regions from SNP 96624 to 97224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,544 DEBUG Processing 275/738 atomic regions from SNP 82474 to 83075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,694 DEBUG Processing 656/862 atomic regions from SNP 196623 to 197223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,704 DEBUG Processing 354/752 atomic regions from SNP 105957 to 106557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,728 DEBUG Processing 324/708 atomic regions from SNP 96924 to 97524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,745 DEBUG Processing 276/738 atomic regions from SNP 82775 to 83376 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,906 DEBUG Processing 657/862 atomic regions from SNP 196923 to 197523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,918 DEBUG Processing 355/752 atomic regions from SNP 106257 to 106857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,934 DEBUG Processing 325/708 atomic regions from SNP 97224 to 97824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,947 DEBUG Processing 277/738 atomic regions from SNP 83076 to 83677 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,124 DEBUG Processing 356/752 atomic regions from SNP 106557 to 107157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,129 DEBUG Processing 658/862 atomic regions from SNP 197223 to 197823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,143 DEBUG Processing 326/708 atomic regions from SNP 97524 to 98124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,154 DEBUG Processing 278/738 atomic regions from SNP 83377 to 83978 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,328 DEBUG Processing 357/752 atomic regions from SNP 106857 to 107457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,353 DEBUG Processing 327/708 atomic regions from SNP 97824 to 98424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,358 DEBUG Processing 279/738 atomic regions from SNP 83678 to 84279 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,362 DEBUG Processing 659/862 atomic regions from SNP 197523 to 198123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,531 DEBUG Processing 358/752 atomic regions from SNP 107157 to 107757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,554 DEBUG Processing 328/708 atomic regions from SNP 98124 to 98724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,559 DEBUG Processing 280/738 atomic regions from SNP 83979 to 84580 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,580 DEBUG Processing 660/862 atomic regions from SNP 197823 to 198423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,740 DEBUG Processing 359/752 atomic regions from SNP 107457 to 108057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,756 DEBUG Processing 329/708 atomic regions from SNP 98424 to 99024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,764 DEBUG Processing 281/738 atomic regions from SNP 84280 to 84881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,794 DEBUG Processing 661/862 atomic regions from SNP 198123 to 198723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,945 DEBUG Processing 360/752 atomic regions from SNP 107757 to 108357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,958 DEBUG Processing 330/708 atomic regions from SNP 98724 to 99324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,972 DEBUG Processing 282/738 atomic regions from SNP 84581 to 85182 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,008 DEBUG Processing 662/862 atomic regions from SNP 198423 to 199023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,146 DEBUG Processing 361/752 atomic regions from SNP 108057 to 108657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,157 DEBUG Processing 331/708 atomic regions from SNP 99024 to 99624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,173 DEBUG Processing 283/738 atomic regions from SNP 84882 to 85483 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,235 DEBUG Processing 663/862 atomic regions from SNP 198723 to 199323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,347 DEBUG Processing 362/752 atomic regions from SNP 108357 to 108957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,356 DEBUG Processing 332/708 atomic regions from SNP 99324 to 99924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,375 DEBUG Processing 284/738 atomic regions from SNP 85183 to 85784 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,475 DEBUG Processing 664/862 atomic regions from SNP 199023 to 199623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,549 DEBUG Processing 363/752 atomic regions from SNP 108657 to 109257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,555 DEBUG Processing 333/708 atomic regions from SNP 99624 to 100224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,575 DEBUG Processing 285/738 atomic regions from SNP 85484 to 86085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,720 DEBUG Processing 665/862 atomic regions from SNP 199323 to 199923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,754 DEBUG Processing 334/708 atomic regions from SNP 99924 to 100524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,756 DEBUG Processing 364/752 atomic regions from SNP 108957 to 109557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,781 DEBUG Processing 286/738 atomic regions from SNP 85785 to 86386 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,956 DEBUG Processing 335/708 atomic regions from SNP 100224 to 100824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,961 DEBUG Processing 365/752 atomic regions from SNP 109257 to 109857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,964 DEBUG Processing 666/862 atomic regions from SNP 199623 to 200223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,985 DEBUG Processing 287/738 atomic regions from SNP 86086 to 86687 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,159 DEBUG Processing 336/708 atomic regions from SNP 100524 to 101124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,166 DEBUG Processing 366/752 atomic regions from SNP 109557 to 110157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,186 DEBUG Processing 667/862 atomic regions from SNP 199923 to 200523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,191 DEBUG Processing 288/738 atomic regions from SNP 86387 to 86988 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,363 DEBUG Processing 337/708 atomic regions from SNP 100824 to 101424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,375 DEBUG Processing 367/752 atomic regions from SNP 109857 to 110457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,397 DEBUG Processing 289/738 atomic regions from SNP 86688 to 87289 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,414 DEBUG Processing 668/862 atomic regions from SNP 200223 to 200823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,565 DEBUG Processing 338/708 atomic regions from SNP 101124 to 101724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,579 DEBUG Processing 368/752 atomic regions from SNP 110157 to 110757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,601 DEBUG Processing 290/738 atomic regions from SNP 86989 to 87590 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,629 DEBUG Processing 669/862 atomic regions from SNP 200523 to 201123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,764 DEBUG Processing 339/708 atomic regions from SNP 101424 to 102024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,780 DEBUG Processing 369/752 atomic regions from SNP 110457 to 111057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,802 DEBUG Processing 291/738 atomic regions from SNP 87290 to 87891 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,843 DEBUG Processing 670/862 atomic regions from SNP 200823 to 201423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,963 DEBUG Processing 340/708 atomic regions from SNP 101724 to 102324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,982 DEBUG Processing 370/752 atomic regions from SNP 110757 to 111357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,004 DEBUG Processing 292/738 atomic regions from SNP 87591 to 88192 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,055 DEBUG Processing 671/862 atomic regions from SNP 201123 to 201723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,169 DEBUG Processing 341/708 atomic regions from SNP 102024 to 102624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,184 DEBUG Processing 371/752 atomic regions from SNP 111057 to 111657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,206 DEBUG Processing 293/738 atomic regions from SNP 87892 to 88493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,266 DEBUG Processing 672/862 atomic regions from SNP 201423 to 202023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,368 DEBUG Processing 342/708 atomic regions from SNP 102324 to 102924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,385 DEBUG Processing 372/752 atomic regions from SNP 111357 to 111957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,409 DEBUG Processing 294/738 atomic regions from SNP 88193 to 88793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,475 DEBUG Processing 673/862 atomic regions from SNP 201723 to 202323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,563 DEBUG Processing 343/708 atomic regions from SNP 102624 to 103224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,588 DEBUG Processing 373/752 atomic regions from SNP 111657 to 112257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,608 DEBUG Processing 295/738 atomic regions from SNP 88493 to 89093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,685 DEBUG Processing 674/862 atomic regions from SNP 202023 to 202623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,760 DEBUG Processing 344/708 atomic regions from SNP 102924 to 103524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,790 DEBUG Processing 374/752 atomic regions from SNP 111957 to 112557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,809 DEBUG Processing 296/738 atomic regions from SNP 88793 to 89393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,894 DEBUG Processing 675/862 atomic regions from SNP 202323 to 202923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,969 DEBUG Processing 345/708 atomic regions from SNP 103224 to 103824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,997 DEBUG Processing 375/752 atomic regions from SNP 112257 to 112857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,014 DEBUG Processing 297/738 atomic regions from SNP 89093 to 89693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,105 DEBUG Processing 676/862 atomic regions from SNP 202623 to 203223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,173 DEBUG Processing 346/708 atomic regions from SNP 103524 to 104124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,200 DEBUG Processing 376/752 atomic regions from SNP 112557 to 113157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,215 DEBUG Processing 298/738 atomic regions from SNP 89393 to 89993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,348 DEBUG Processing 677/862 atomic regions from SNP 202923 to 203523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,371 DEBUG Processing 347/708 atomic regions from SNP 103824 to 104424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,400 DEBUG Processing 377/752 atomic regions from SNP 112857 to 113457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,412 DEBUG Processing 299/738 atomic regions from SNP 89693 to 90293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,570 DEBUG Processing 348/708 atomic regions from SNP 104124 to 104724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,577 DEBUG Processing 678/862 atomic regions from SNP 203223 to 203823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,601 DEBUG Processing 378/752 atomic regions from SNP 113157 to 113757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,611 DEBUG Processing 300/738 atomic regions from SNP 89993 to 90593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,771 DEBUG Processing 349/708 atomic regions from SNP 104424 to 105024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,793 DEBUG Processing 679/862 atomic regions from SNP 203523 to 204123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,801 DEBUG Processing 379/752 atomic regions from SNP 113457 to 114057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,809 DEBUG Processing 301/738 atomic regions from SNP 90293 to 90893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,971 DEBUG Processing 350/708 atomic regions from SNP 104724 to 105324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,003 DEBUG Processing 380/752 atomic regions from SNP 113757 to 114357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,008 DEBUG Processing 680/862 atomic regions from SNP 203823 to 204423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,008 DEBUG Processing 302/738 atomic regions from SNP 90593 to 91193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,172 DEBUG Processing 351/708 atomic regions from SNP 105024 to 105624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,209 DEBUG Processing 303/738 atomic regions from SNP 90893 to 91493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,220 DEBUG Processing 381/752 atomic regions from SNP 114057 to 114657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,221 DEBUG Processing 681/862 atomic regions from SNP 204123 to 204723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,372 DEBUG Processing 352/708 atomic regions from SNP 105324 to 105924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,415 DEBUG Processing 304/738 atomic regions from SNP 91193 to 91793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,435 DEBUG Processing 682/862 atomic regions from SNP 204423 to 205023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,437 DEBUG Processing 382/752 atomic regions from SNP 114357 to 114957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,572 DEBUG Processing 353/708 atomic regions from SNP 105624 to 106224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,616 DEBUG Processing 305/738 atomic regions from SNP 91493 to 92093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,638 DEBUG Processing 383/752 atomic regions from SNP 114657 to 115257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,649 DEBUG Processing 683/862 atomic regions from SNP 204723 to 205323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,770 DEBUG Processing 354/708 atomic regions from SNP 105924 to 106524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,814 DEBUG Processing 306/738 atomic regions from SNP 91793 to 92393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,839 DEBUG Processing 384/752 atomic regions from SNP 114957 to 115557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,865 DEBUG Processing 684/862 atomic regions from SNP 205023 to 205623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,971 DEBUG Processing 355/708 atomic regions from SNP 106224 to 106824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,013 DEBUG Processing 307/738 atomic regions from SNP 92093 to 92693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,039 DEBUG Processing 385/752 atomic regions from SNP 115257 to 115857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,093 DEBUG Processing 685/862 atomic regions from SNP 205323 to 205923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,173 DEBUG Processing 356/708 atomic regions from SNP 106524 to 107124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,213 DEBUG Processing 308/738 atomic regions from SNP 92393 to 92993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,239 DEBUG Processing 386/752 atomic regions from SNP 115557 to 116157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,329 DEBUG Processing 686/862 atomic regions from SNP 205623 to 206223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,377 DEBUG Processing 357/708 atomic regions from SNP 106824 to 107424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,431 DEBUG Processing 309/738 atomic regions from SNP 92693 to 93293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,436 DEBUG Processing 387/752 atomic regions from SNP 115857 to 116457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,574 DEBUG Processing 687/862 atomic regions from SNP 205923 to 206523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,580 DEBUG Processing 358/708 atomic regions from SNP 107124 to 107724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,640 DEBUG Processing 388/752 atomic regions from SNP 116157 to 116757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,644 DEBUG Processing 310/738 atomic regions from SNP 92993 to 93593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,783 DEBUG Processing 359/708 atomic regions from SNP 107424 to 108024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,798 DEBUG Processing 688/862 atomic regions from SNP 206223 to 206823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,841 DEBUG Processing 311/738 atomic regions from SNP 93293 to 93893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,842 DEBUG Processing 389/752 atomic regions from SNP 116457 to 117057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,985 DEBUG Processing 360/708 atomic regions from SNP 107724 to 108324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,016 DEBUG Processing 689/862 atomic regions from SNP 206523 to 207123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,041 DEBUG Processing 390/752 atomic regions from SNP 116757 to 117357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,041 DEBUG Processing 312/738 atomic regions from SNP 93593 to 94193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,189 DEBUG Processing 361/708 atomic regions from SNP 108024 to 108624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,239 DEBUG Processing 690/862 atomic regions from SNP 206823 to 207423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,241 DEBUG Processing 313/738 atomic regions from SNP 93893 to 94493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,248 DEBUG Processing 391/752 atomic regions from SNP 117057 to 117657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,387 DEBUG Processing 362/708 atomic regions from SNP 108324 to 108924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,441 DEBUG Processing 314/738 atomic regions from SNP 94193 to 94793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,458 DEBUG Processing 392/752 atomic regions from SNP 117357 to 117957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,481 DEBUG Processing 691/862 atomic regions from SNP 207123 to 207723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,586 DEBUG Processing 363/708 atomic regions from SNP 108624 to 109224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,642 DEBUG Processing 315/738 atomic regions from SNP 94493 to 95093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,675 DEBUG Processing 393/752 atomic regions from SNP 117657 to 118257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,716 DEBUG Processing 692/862 atomic regions from SNP 207423 to 208023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,784 DEBUG Processing 364/708 atomic regions from SNP 108924 to 109524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,843 DEBUG Processing 316/738 atomic regions from SNP 94793 to 95393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,897 DEBUG Processing 394/752 atomic regions from SNP 117957 to 118557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,943 DEBUG Processing 693/862 atomic regions from SNP 207723 to 208323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,985 DEBUG Processing 365/708 atomic regions from SNP 109224 to 109824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,042 DEBUG Processing 317/738 atomic regions from SNP 95093 to 95693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,098 DEBUG Processing 395/752 atomic regions from SNP 118257 to 118857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,186 DEBUG Processing 366/708 atomic regions from SNP 109524 to 110124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,190 DEBUG Processing 694/862 atomic regions from SNP 208023 to 208623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,242 DEBUG Processing 318/738 atomic regions from SNP 95393 to 95993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,298 DEBUG Processing 396/752 atomic regions from SNP 118557 to 119157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,386 DEBUG Processing 367/708 atomic regions from SNP 109824 to 110424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,433 DEBUG Processing 695/862 atomic regions from SNP 208323 to 208923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,442 DEBUG Processing 319/738 atomic regions from SNP 95693 to 96293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,499 DEBUG Processing 397/752 atomic regions from SNP 118857 to 119457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,586 DEBUG Processing 368/708 atomic regions from SNP 110124 to 110724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,642 DEBUG Processing 320/738 atomic regions from SNP 95993 to 96593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,685 DEBUG Processing 696/862 atomic regions from SNP 208623 to 209223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,700 DEBUG Processing 398/752 atomic regions from SNP 119157 to 119757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,781 DEBUG Processing 369/708 atomic regions from SNP 110424 to 111024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,843 DEBUG Processing 321/738 atomic regions from SNP 96293 to 96893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,902 DEBUG Processing 399/752 atomic regions from SNP 119457 to 120057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,932 DEBUG Processing 697/862 atomic regions from SNP 208923 to 209523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,980 DEBUG Processing 370/708 atomic regions from SNP 110724 to 111324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,045 DEBUG Processing 322/738 atomic regions from SNP 96593 to 97193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,106 DEBUG Processing 400/752 atomic regions from SNP 119757 to 120357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,176 DEBUG Processing 698/862 atomic regions from SNP 209223 to 209823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,180 DEBUG Processing 371/708 atomic regions from SNP 111024 to 111624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,247 DEBUG Processing 323/738 atomic regions from SNP 96893 to 97493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,324 DEBUG Processing 401/752 atomic regions from SNP 120057 to 120657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,385 DEBUG Processing 372/708 atomic regions from SNP 111324 to 111924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,395 DEBUG Processing 699/862 atomic regions from SNP 209523 to 210123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,446 DEBUG Processing 324/738 atomic regions from SNP 97193 to 97793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,524 DEBUG Processing 402/752 atomic regions from SNP 120357 to 120957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,588 DEBUG Processing 373/708 atomic regions from SNP 111624 to 112224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,614 DEBUG Processing 700/862 atomic regions from SNP 209823 to 210423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,646 DEBUG Processing 325/738 atomic regions from SNP 97493 to 98093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,727 DEBUG Processing 403/752 atomic regions from SNP 120657 to 121257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,795 DEBUG Processing 374/708 atomic regions from SNP 111924 to 112524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,833 DEBUG Processing 701/862 atomic regions from SNP 210123 to 210723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,845 DEBUG Processing 326/738 atomic regions from SNP 97793 to 98393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,869 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:50:01,870 DEBUG chr14: Signal quantile: 0.994. signal threshold: 13. Best RMSEA: 0.020 2025-01-31 09:50:01,928 DEBUG Processing 404/752 atomic regions from SNP 120957 to 121557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,995 DEBUG Processing 375/708 atomic regions from SNP 112224 to 112824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,046 DEBUG Processing 327/738 atomic regions from SNP 98093 to 98693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,046 DEBUG Processing 702/862 atomic regions from SNP 210423 to 211023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,128 DEBUG Processing 405/752 atomic regions from SNP 121257 to 121857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,216 DEBUG Processing 376/708 atomic regions from SNP 112524 to 113124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,245 DEBUG Processing 328/738 atomic regions from SNP 98393 to 98993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,260 DEBUG Processing 703/862 atomic regions from SNP 210723 to 211323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,329 DEBUG Processing 406/752 atomic regions from SNP 121557 to 122157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,432 DEBUG Processing 377/708 atomic regions from SNP 112824 to 113424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,469 DEBUG Processing 329/738 atomic regions from SNP 98693 to 99293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,499 DEBUG Processing 704/862 atomic regions from SNP 211023 to 211623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,531 DEBUG Processing 407/752 atomic regions from SNP 121857 to 122457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,634 DEBUG Processing 378/708 atomic regions from SNP 113124 to 113724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,676 DEBUG Processing 330/738 atomic regions from SNP 98993 to 99593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,723 DEBUG Processing 705/862 atomic regions from SNP 211323 to 211923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,730 DEBUG Processing 408/752 atomic regions from SNP 122157 to 122757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,834 DEBUG Processing 379/708 atomic regions from SNP 113424 to 114024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,879 DEBUG Processing 331/738 atomic regions from SNP 99293 to 99893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,932 DEBUG Processing 409/752 atomic regions from SNP 122457 to 123057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,960 DEBUG Processing 706/862 atomic regions from SNP 211623 to 212223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,035 DEBUG Processing 380/708 atomic regions from SNP 113724 to 114324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,084 DEBUG Processing 332/738 atomic regions from SNP 99593 to 100193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,135 DEBUG Processing 410/752 atomic regions from SNP 122757 to 123357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,205 DEBUG Processing 707/862 atomic regions from SNP 211923 to 212523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,237 DEBUG Processing 381/708 atomic regions from SNP 114024 to 114624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,287 DEBUG Processing 333/738 atomic regions from SNP 99893 to 100493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,338 DEBUG Processing 411/752 atomic regions from SNP 123057 to 123657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,435 DEBUG Processing 708/862 atomic regions from SNP 212223 to 212823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,439 DEBUG Processing 382/708 atomic regions from SNP 114324 to 114924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,486 DEBUG Processing 334/738 atomic regions from SNP 100193 to 100793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,538 DEBUG Processing 412/752 atomic regions from SNP 123357 to 123957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,641 DEBUG Processing 383/708 atomic regions from SNP 114624 to 115224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,651 DEBUG Processing 709/862 atomic regions from SNP 212523 to 213123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,685 DEBUG Processing 335/738 atomic regions from SNP 100493 to 101093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,737 DEBUG Processing 413/752 atomic regions from SNP 123657 to 124257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,845 DEBUG Processing 384/708 atomic regions from SNP 114924 to 115524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,869 DEBUG Processing 710/862 atomic regions from SNP 212823 to 213423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,886 DEBUG Processing 336/738 atomic regions from SNP 100793 to 101393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,926 DEBUG chr14 total SNP count: 202320 2025-01-31 09:50:03,926 DEBUG chr14 length: 124902244 2025-01-31 09:50:03,926 DEBUG ----------------------------------------- 2025-01-31 09:50:03,926 INFO Processing SNPs in chr14 2025-01-31 09:50:03,938 DEBUG Processing 414/752 atomic regions from SNP 123957 to 124557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,047 DEBUG Processing 385/708 atomic regions from SNP 115224 to 115824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,082 DEBUG Processing 711/862 atomic regions from SNP 213123 to 213723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,084 DEBUG Processing 337/738 atomic regions from SNP 101093 to 101693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,137 DEBUG Processing 415/752 atomic regions from SNP 124257 to 124857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,230 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 168), (168, 202320)] 2025-01-31 09:50:04,252 DEBUG Processing 386/708 atomic regions from SNP 115524 to 116124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,284 DEBUG Processing 338/738 atomic regions from SNP 101393 to 101993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,295 DEBUG Processing 712/862 atomic regions from SNP 213423 to 214023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,315 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:04,336 DEBUG Processing 416/752 atomic regions from SNP 124557 to 125157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,337 DEBUG Segmenting atomic regions: 2025-01-31 09:50:04,422 DEBUG Processing 1/1 atomic regions from SNP 0 to 167 for chr14 (subchromosome 1 of 2). 2025-01-31 09:50:04,429 DEBUG Unique SNPs positions in subchromosome 1: 168 2025-01-31 09:50:04,429 DEBUG Subchromosome time: 0.11448491364717484, subchromosome SNPs: 168 2025-01-31 09:50:04,454 DEBUG Processing 387/708 atomic regions from SNP 115824 to 116424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,478 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:04,485 DEBUG Processing 339/738 atomic regions from SNP 101693 to 102293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,512 DEBUG Processing 713/862 atomic regions from SNP 213723 to 214323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,536 DEBUG Processing 417/752 atomic regions from SNP 124857 to 125457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,659 DEBUG Processing 388/708 atomic regions from SNP 116124 to 116724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,685 DEBUG Processing 340/738 atomic regions from SNP 101993 to 102593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,735 DEBUG Processing 418/752 atomic regions from SNP 125157 to 125757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,745 DEBUG Processing 714/862 atomic regions from SNP 214023 to 214623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,859 DEBUG Processing 389/708 atomic regions from SNP 116424 to 117024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,884 DEBUG Processing 341/738 atomic regions from SNP 102293 to 102893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,935 DEBUG Processing 419/752 atomic regions from SNP 125457 to 126057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,986 DEBUG Processing 715/862 atomic regions from SNP 214323 to 214923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,056 DEBUG Processing 390/708 atomic regions from SNP 116724 to 117324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,082 DEBUG Processing 342/738 atomic regions from SNP 102593 to 103193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,134 DEBUG Processing 420/752 atomic regions from SNP 125757 to 126357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,227 DEBUG Processing 716/862 atomic regions from SNP 214623 to 215223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,255 DEBUG Processing 391/708 atomic regions from SNP 117024 to 117624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,281 DEBUG Processing 343/738 atomic regions from SNP 102893 to 103493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,332 DEBUG Processing 421/752 atomic regions from SNP 126057 to 126657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,455 DEBUG Processing 392/708 atomic regions from SNP 117324 to 117924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,480 DEBUG Processing 344/738 atomic regions from SNP 103193 to 103793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,481 DEBUG Processing 717/862 atomic regions from SNP 214923 to 215523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,530 DEBUG Processing 422/752 atomic regions from SNP 126357 to 126957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,670 DEBUG Processing 393/708 atomic regions from SNP 117624 to 118224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,681 DEBUG Processing 345/738 atomic regions from SNP 103493 to 104093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,730 DEBUG Processing 423/752 atomic regions from SNP 126657 to 127257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,731 DEBUG Processing 718/862 atomic regions from SNP 215223 to 215823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,870 DEBUG Processing 394/708 atomic regions from SNP 117924 to 118524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,882 DEBUG Processing 346/738 atomic regions from SNP 103793 to 104393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,931 DEBUG Processing 424/752 atomic regions from SNP 126957 to 127557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,977 DEBUG Processing 719/862 atomic regions from SNP 215523 to 216123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,068 DEBUG Processing 395/708 atomic regions from SNP 118224 to 118824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,089 DEBUG Processing 347/738 atomic regions from SNP 104093 to 104693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,142 DEBUG Processing 425/752 atomic regions from SNP 127257 to 127857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,211 DEBUG Processing 720/862 atomic regions from SNP 215823 to 216423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,269 DEBUG Processing 396/708 atomic regions from SNP 118524 to 119124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,290 DEBUG Processing 348/738 atomic regions from SNP 104393 to 104993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,360 DEBUG Processing 426/752 atomic regions from SNP 127557 to 128157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,440 DEBUG Processing 721/862 atomic regions from SNP 216123 to 216723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,474 DEBUG Processing 397/708 atomic regions from SNP 118824 to 119424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,490 DEBUG Processing 349/738 atomic regions from SNP 104693 to 105293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,587 DEBUG Processing 427/752 atomic regions from SNP 127857 to 128457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,669 DEBUG Processing 722/862 atomic regions from SNP 216423 to 217023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,684 DEBUG Processing 398/708 atomic regions from SNP 119124 to 119724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,693 DEBUG Processing 350/738 atomic regions from SNP 104993 to 105593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,812 DEBUG Processing 428/752 atomic regions from SNP 128157 to 128757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,891 DEBUG Processing 723/862 atomic regions from SNP 216723 to 217323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,892 DEBUG Processing 399/708 atomic regions from SNP 119424 to 120024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,892 DEBUG Processing 351/738 atomic regions from SNP 105293 to 105893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,014 DEBUG Processing 429/752 atomic regions from SNP 128457 to 129057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,100 DEBUG Processing 400/708 atomic regions from SNP 119724 to 120324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,101 DEBUG Processing 352/738 atomic regions from SNP 105593 to 106193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,109 DEBUG Processing 724/862 atomic regions from SNP 217023 to 217623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,213 DEBUG Processing 430/752 atomic regions from SNP 128757 to 129357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,300 DEBUG Processing 353/738 atomic regions from SNP 105893 to 106493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,307 DEBUG Processing 401/708 atomic regions from SNP 120024 to 120624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,327 DEBUG Processing 725/862 atomic regions from SNP 217323 to 217923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,425 DEBUG Processing 431/752 atomic regions from SNP 129057 to 129657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,501 DEBUG Processing 354/738 atomic regions from SNP 106193 to 106793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,514 DEBUG Processing 402/708 atomic regions from SNP 120324 to 120924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,542 DEBUG Processing 726/862 atomic regions from SNP 217623 to 218223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,639 DEBUG Processing 432/752 atomic regions from SNP 129357 to 129957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,699 DEBUG Processing 355/738 atomic regions from SNP 106493 to 107093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,721 DEBUG Processing 403/708 atomic regions from SNP 120624 to 121224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,757 DEBUG Processing 727/862 atomic regions from SNP 217923 to 218523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,837 DEBUG Processing 433/752 atomic regions from SNP 129657 to 130257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,901 DEBUG Processing 356/738 atomic regions from SNP 106793 to 107393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,926 DEBUG Processing 404/708 atomic regions from SNP 120924 to 121524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,967 DEBUG Processing 728/862 atomic regions from SNP 218223 to 218823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,033 DEBUG Processing 434/752 atomic regions from SNP 129957 to 130557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,099 DEBUG Processing 357/738 atomic regions from SNP 107093 to 107693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,130 DEBUG Processing 405/708 atomic regions from SNP 121224 to 121824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,178 DEBUG Processing 729/862 atomic regions from SNP 218523 to 219123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,248 DEBUG Processing 435/752 atomic regions from SNP 130257 to 130857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,295 DEBUG Processing 358/738 atomic regions from SNP 107393 to 107993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,334 DEBUG Processing 406/708 atomic regions from SNP 121524 to 122124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,393 DEBUG Processing 730/862 atomic regions from SNP 218823 to 219423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,468 DEBUG Processing 436/752 atomic regions from SNP 130557 to 131157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,490 DEBUG Processing 359/738 atomic regions from SNP 107693 to 108293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,537 DEBUG Processing 407/708 atomic regions from SNP 121824 to 122424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,607 DEBUG Processing 731/862 atomic regions from SNP 219123 to 219723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,679 DEBUG Processing 437/752 atomic regions from SNP 130857 to 131457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,686 DEBUG Processing 360/738 atomic regions from SNP 107993 to 108593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,740 DEBUG Processing 408/708 atomic regions from SNP 122124 to 122724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,826 DEBUG Processing 732/862 atomic regions from SNP 219423 to 220023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,882 DEBUG Processing 361/738 atomic regions from SNP 108293 to 108893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,899 DEBUG Processing 438/752 atomic regions from SNP 131157 to 131757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,939 DEBUG Processing 409/708 atomic regions from SNP 122424 to 123024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,055 DEBUG Processing 733/862 atomic regions from SNP 219723 to 220323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,079 DEBUG Processing 362/738 atomic regions from SNP 108593 to 109193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,120 DEBUG Processing 439/752 atomic regions from SNP 131457 to 132057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,141 DEBUG Processing 410/708 atomic regions from SNP 122724 to 123324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,276 DEBUG Processing 363/738 atomic regions from SNP 108893 to 109493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,297 DEBUG Processing 734/862 atomic regions from SNP 220023 to 220623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,321 DEBUG Processing 440/752 atomic regions from SNP 131757 to 132357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,343 DEBUG Processing 411/708 atomic regions from SNP 123024 to 123624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,471 DEBUG Processing 364/738 atomic regions from SNP 109193 to 109793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,525 DEBUG Processing 735/862 atomic regions from SNP 220323 to 220923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,544 DEBUG Processing 441/752 atomic regions from SNP 132057 to 132657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,547 DEBUG Processing 412/708 atomic regions from SNP 123324 to 123924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,665 DEBUG Processing 365/738 atomic regions from SNP 109493 to 110093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,744 DEBUG Processing 736/862 atomic regions from SNP 220623 to 221223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,752 DEBUG Processing 413/708 atomic regions from SNP 123624 to 124224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,762 DEBUG Processing 442/752 atomic regions from SNP 132357 to 132957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,859 DEBUG Processing 366/738 atomic regions from SNP 109793 to 110393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,955 DEBUG Processing 414/708 atomic regions from SNP 123924 to 124524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,961 DEBUG Processing 737/862 atomic regions from SNP 220923 to 221523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,984 DEBUG Processing 443/752 atomic regions from SNP 132657 to 133257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,058 DEBUG Processing 367/738 atomic regions from SNP 110093 to 110693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,157 DEBUG Processing 415/708 atomic regions from SNP 124224 to 124824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,178 DEBUG Processing 738/862 atomic regions from SNP 221223 to 221823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,205 DEBUG Processing 444/752 atomic regions from SNP 132957 to 133557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,253 DEBUG Processing 368/738 atomic regions from SNP 110393 to 110993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,357 DEBUG Processing 416/708 atomic regions from SNP 124524 to 125124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,403 DEBUG Processing 445/752 atomic regions from SNP 133257 to 133857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,418 DEBUG Processing 739/862 atomic regions from SNP 221523 to 222123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,449 DEBUG Processing 369/738 atomic regions from SNP 110693 to 111293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,557 DEBUG Processing 417/708 atomic regions from SNP 124824 to 125424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,602 DEBUG Processing 446/752 atomic regions from SNP 133557 to 134157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,645 DEBUG Processing 370/738 atomic regions from SNP 110993 to 111593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,652 DEBUG Processing 740/862 atomic regions from SNP 221823 to 222423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,756 DEBUG Processing 418/708 atomic regions from SNP 125124 to 125724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,800 DEBUG Processing 447/752 atomic regions from SNP 133857 to 134457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,841 DEBUG Processing 371/738 atomic regions from SNP 111293 to 111893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,863 DEBUG Processing 741/862 atomic regions from SNP 222123 to 222723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,968 DEBUG Processing 419/708 atomic regions from SNP 125424 to 126024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,999 DEBUG Processing 448/752 atomic regions from SNP 134157 to 134757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,038 DEBUG Processing 372/738 atomic regions from SNP 111593 to 112193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,098 DEBUG Processing 742/862 atomic regions from SNP 222423 to 223023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,171 DEBUG Processing 420/708 atomic regions from SNP 125724 to 126324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,200 DEBUG Processing 449/752 atomic regions from SNP 134457 to 135057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,238 DEBUG Processing 373/738 atomic regions from SNP 111893 to 112493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,311 DEBUG Processing 743/862 atomic regions from SNP 222723 to 223323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,374 DEBUG Processing 421/708 atomic regions from SNP 126024 to 126624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,427 DEBUG Processing 450/752 atomic regions from SNP 134757 to 135357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,438 DEBUG Processing 374/738 atomic regions from SNP 112193 to 112793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,526 DEBUG Processing 744/862 atomic regions from SNP 223023 to 223623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,573 DEBUG Processing 422/708 atomic regions from SNP 126324 to 126924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,638 DEBUG Processing 375/738 atomic regions from SNP 112493 to 113093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,663 DEBUG Processing 451/752 atomic regions from SNP 135057 to 135657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,741 DEBUG Processing 745/862 atomic regions from SNP 223323 to 223923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,773 DEBUG Processing 423/708 atomic regions from SNP 126624 to 127224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,839 DEBUG Processing 376/738 atomic regions from SNP 112793 to 113393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,899 DEBUG Processing 452/752 atomic regions from SNP 135357 to 135957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,958 DEBUG Processing 746/862 atomic regions from SNP 223623 to 224223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,993 DEBUG Processing 424/708 atomic regions from SNP 126924 to 127524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,039 DEBUG Processing 377/738 atomic regions from SNP 113093 to 113693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,137 DEBUG Processing 453/752 atomic regions from SNP 135657 to 136257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,177 DEBUG Processing 747/862 atomic regions from SNP 223923 to 224523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,200 DEBUG Processing 425/708 atomic regions from SNP 127224 to 127824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,239 DEBUG Processing 378/738 atomic regions from SNP 113393 to 113993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,371 DEBUG Processing 454/752 atomic regions from SNP 135957 to 136557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,394 DEBUG Processing 748/862 atomic regions from SNP 224223 to 224823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,409 DEBUG Processing 426/708 atomic regions from SNP 127524 to 128124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,452 DEBUG Processing 379/738 atomic regions from SNP 113693 to 114293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,606 DEBUG Processing 455/752 atomic regions from SNP 136257 to 136857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,610 DEBUG Processing 749/862 atomic regions from SNP 224523 to 225123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,615 DEBUG Processing 427/708 atomic regions from SNP 127824 to 128424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,680 DEBUG Processing 380/738 atomic regions from SNP 113993 to 114593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,825 DEBUG Processing 750/862 atomic regions from SNP 224823 to 225423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,839 DEBUG Processing 428/708 atomic regions from SNP 128124 to 128724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,843 DEBUG Processing 456/752 atomic regions from SNP 136557 to 137157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,908 DEBUG Processing 381/738 atomic regions from SNP 114293 to 114893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,045 DEBUG Processing 751/862 atomic regions from SNP 225123 to 225723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,050 DEBUG Processing 429/708 atomic regions from SNP 128424 to 129024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,086 DEBUG Processing 457/752 atomic regions from SNP 136857 to 137457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,146 DEBUG Processing 382/738 atomic regions from SNP 114593 to 115193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,258 DEBUG Processing 752/862 atomic regions from SNP 225423 to 226023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,262 DEBUG Processing 430/708 atomic regions from SNP 128724 to 129324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,322 DEBUG Processing 458/752 atomic regions from SNP 137157 to 137757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,377 DEBUG Processing 383/738 atomic regions from SNP 114893 to 115493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,472 DEBUG Processing 431/708 atomic regions from SNP 129024 to 129624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,473 DEBUG Processing 753/862 atomic regions from SNP 225723 to 226323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,562 DEBUG Processing 459/752 atomic regions from SNP 137457 to 138057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,610 DEBUG Processing 384/738 atomic regions from SNP 115193 to 115793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,687 DEBUG Processing 754/862 atomic regions from SNP 226023 to 226623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,691 DEBUG Processing 432/708 atomic regions from SNP 129324 to 129924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,795 DEBUG Processing 460/752 atomic regions from SNP 137757 to 138357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,845 DEBUG Processing 385/738 atomic regions from SNP 115493 to 116093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,899 DEBUG Processing 755/862 atomic regions from SNP 226323 to 226923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,915 DEBUG Processing 433/708 atomic regions from SNP 129624 to 130224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,030 DEBUG Processing 461/752 atomic regions from SNP 138057 to 138657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,079 DEBUG Processing 386/738 atomic regions from SNP 115793 to 116393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,115 DEBUG Processing 756/862 atomic regions from SNP 226623 to 227223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,124 DEBUG Processing 434/708 atomic regions from SNP 129924 to 130524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,267 DEBUG Processing 462/752 atomic regions from SNP 138357 to 138957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,303 DEBUG Processing 387/738 atomic regions from SNP 116093 to 116693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,330 DEBUG Processing 435/708 atomic regions from SNP 130224 to 130824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,332 DEBUG Processing 757/862 atomic regions from SNP 226923 to 227523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,502 DEBUG Processing 463/752 atomic regions from SNP 138657 to 139257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,514 DEBUG Processing 388/738 atomic regions from SNP 116393 to 116993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,538 DEBUG Processing 436/708 atomic regions from SNP 130524 to 131124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,549 DEBUG Processing 758/862 atomic regions from SNP 227223 to 227823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,708 DEBUG Processing 464/752 atomic regions from SNP 138957 to 139557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,749 DEBUG Processing 437/708 atomic regions from SNP 130824 to 131424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,753 DEBUG Processing 389/738 atomic regions from SNP 116693 to 117293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,768 DEBUG Processing 759/862 atomic regions from SNP 227523 to 228123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,915 DEBUG Processing 465/752 atomic regions from SNP 139257 to 139857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,962 DEBUG Processing 438/708 atomic regions from SNP 131124 to 131724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,988 DEBUG Processing 760/862 atomic regions from SNP 227823 to 228423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,992 DEBUG Processing 390/738 atomic regions from SNP 116993 to 117593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,115 DEBUG Processing 466/752 atomic regions from SNP 139557 to 140157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,195 DEBUG Processing 439/708 atomic regions from SNP 131424 to 132024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,210 DEBUG Processing 761/862 atomic regions from SNP 228123 to 228723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,213 DEBUG Processing 391/738 atomic regions from SNP 117293 to 117893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,325 DEBUG Processing 467/752 atomic regions from SNP 139857 to 140457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,414 DEBUG Processing 392/738 atomic regions from SNP 117593 to 118193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,423 DEBUG Processing 440/708 atomic regions from SNP 131724 to 132324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,436 DEBUG Processing 762/862 atomic regions from SNP 228423 to 229023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,545 DEBUG Processing 468/752 atomic regions from SNP 140157 to 140757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,616 DEBUG Processing 393/738 atomic regions from SNP 117893 to 118493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,650 DEBUG Processing 441/708 atomic regions from SNP 132024 to 132624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,659 DEBUG Processing 763/862 atomic regions from SNP 228723 to 229323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,751 DEBUG Processing 469/752 atomic regions from SNP 140457 to 141057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,828 DEBUG Processing 394/738 atomic regions from SNP 118193 to 118793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,870 DEBUG Processing 442/708 atomic regions from SNP 132324 to 132924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,881 DEBUG Processing 764/862 atomic regions from SNP 229023 to 229623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,954 DEBUG Processing 470/752 atomic regions from SNP 140757 to 141357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,058 DEBUG Processing 395/738 atomic regions from SNP 118493 to 119093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,076 DEBUG Processing 443/708 atomic regions from SNP 132624 to 133224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,102 DEBUG Processing 765/862 atomic regions from SNP 229323 to 229923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,155 DEBUG Processing 471/752 atomic regions from SNP 141057 to 141657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,287 DEBUG Processing 396/738 atomic regions from SNP 118793 to 119393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,303 DEBUG Processing 444/708 atomic regions from SNP 132924 to 133524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,318 DEBUG Processing 766/862 atomic regions from SNP 229623 to 230223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,358 DEBUG Processing 472/752 atomic regions from SNP 141357 to 141957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,489 DEBUG Processing 397/738 atomic regions from SNP 119093 to 119693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,523 DEBUG Processing 445/708 atomic regions from SNP 133224 to 133824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,539 DEBUG Processing 767/862 atomic regions from SNP 229923 to 230523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,569 DEBUG Processing 473/752 atomic regions from SNP 141657 to 142257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,689 DEBUG Processing 398/738 atomic regions from SNP 119393 to 119993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,733 DEBUG Processing 446/708 atomic regions from SNP 133524 to 134124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,758 DEBUG Processing 768/862 atomic regions from SNP 230223 to 230823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,771 DEBUG Processing 474/752 atomic regions from SNP 141957 to 142557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,891 DEBUG Processing 399/738 atomic regions from SNP 119693 to 120293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,951 DEBUG Processing 447/708 atomic regions from SNP 133824 to 134424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,972 DEBUG Processing 475/752 atomic regions from SNP 142257 to 142857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,977 DEBUG Processing 769/862 atomic regions from SNP 230523 to 231123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,093 DEBUG Processing 400/738 atomic regions from SNP 119993 to 120593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,175 DEBUG Processing 476/752 atomic regions from SNP 142557 to 143157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,178 DEBUG Processing 448/708 atomic regions from SNP 134124 to 134724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,192 DEBUG Processing 770/862 atomic regions from SNP 230823 to 231423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,294 DEBUG Processing 401/738 atomic regions from SNP 120293 to 120893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,376 DEBUG Processing 477/752 atomic regions from SNP 142857 to 143457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,393 DEBUG Processing 449/708 atomic regions from SNP 134424 to 135024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,408 DEBUG Processing 771/862 atomic regions from SNP 231123 to 231723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,495 DEBUG Processing 402/738 atomic regions from SNP 120593 to 121193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,583 DEBUG Processing 478/752 atomic regions from SNP 143157 to 143757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,626 DEBUG Processing 450/708 atomic regions from SNP 134724 to 135324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,633 DEBUG Processing 772/862 atomic regions from SNP 231423 to 232023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,693 DEBUG Processing 403/738 atomic regions from SNP 120893 to 121493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,803 DEBUG Processing 479/752 atomic regions from SNP 143457 to 144057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,848 DEBUG Processing 451/708 atomic regions from SNP 135024 to 135624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,866 DEBUG Processing 773/862 atomic regions from SNP 231723 to 232323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,891 DEBUG Processing 404/738 atomic regions from SNP 121193 to 121793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,019 DEBUG Processing 480/752 atomic regions from SNP 143757 to 144357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,056 DEBUG Processing 452/708 atomic regions from SNP 135324 to 135924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,093 DEBUG Processing 405/738 atomic regions from SNP 121493 to 122093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,120 DEBUG Processing 774/862 atomic regions from SNP 232023 to 232623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,251 DEBUG Processing 481/752 atomic regions from SNP 144057 to 144657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,268 DEBUG Processing 453/708 atomic regions from SNP 135624 to 136224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,296 DEBUG Processing 406/738 atomic regions from SNP 121793 to 122393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,368 DEBUG Processing 775/862 atomic regions from SNP 232323 to 232923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,461 DEBUG Processing 482/752 atomic regions from SNP 144357 to 144957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,475 DEBUG Processing 454/708 atomic regions from SNP 135924 to 136524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,500 DEBUG Processing 407/738 atomic regions from SNP 122093 to 122693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,605 DEBUG Processing 776/862 atomic regions from SNP 232623 to 233223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,665 DEBUG Processing 483/752 atomic regions from SNP 144657 to 145257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,683 DEBUG Processing 455/708 atomic regions from SNP 136224 to 136824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,702 DEBUG Processing 408/738 atomic regions from SNP 122393 to 122993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,830 DEBUG Processing 777/862 atomic regions from SNP 232923 to 233523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,868 DEBUG Processing 484/752 atomic regions from SNP 144957 to 145557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,889 DEBUG Processing 456/708 atomic regions from SNP 136524 to 137124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,928 DEBUG Processing 409/738 atomic regions from SNP 122693 to 123293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,043 DEBUG Processing 778/862 atomic regions from SNP 233223 to 233823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,071 DEBUG Processing 485/752 atomic regions from SNP 145257 to 145857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,095 DEBUG Processing 457/708 atomic regions from SNP 136824 to 137424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,145 DEBUG Processing 410/738 atomic regions from SNP 122993 to 123593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,259 DEBUG Processing 779/862 atomic regions from SNP 233523 to 234123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,272 DEBUG Processing 486/752 atomic regions from SNP 145557 to 146157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,302 DEBUG Processing 458/708 atomic regions from SNP 137124 to 137724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,346 DEBUG Processing 411/738 atomic regions from SNP 123293 to 123893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,475 DEBUG Processing 780/862 atomic regions from SNP 233823 to 234423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,477 DEBUG Processing 487/752 atomic regions from SNP 145857 to 146457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,509 DEBUG Processing 459/708 atomic regions from SNP 137424 to 138024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,547 DEBUG Processing 412/738 atomic regions from SNP 123593 to 124193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,679 DEBUG Processing 488/752 atomic regions from SNP 146157 to 146757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,693 DEBUG Processing 781/862 atomic regions from SNP 234123 to 234723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,716 DEBUG Processing 460/708 atomic regions from SNP 137724 to 138324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,748 DEBUG Processing 413/738 atomic regions from SNP 123893 to 124493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,880 DEBUG Processing 489/752 atomic regions from SNP 146457 to 147057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,912 DEBUG Processing 782/862 atomic regions from SNP 234423 to 235023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,923 DEBUG Processing 461/708 atomic regions from SNP 138024 to 138624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,949 DEBUG Processing 414/738 atomic regions from SNP 124193 to 124793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,081 DEBUG Processing 490/752 atomic regions from SNP 146757 to 147357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,127 DEBUG Processing 462/708 atomic regions from SNP 138324 to 138924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,130 DEBUG Processing 783/862 atomic regions from SNP 234723 to 235323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,150 DEBUG Processing 415/738 atomic regions from SNP 124493 to 125093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,291 DEBUG Processing 491/752 atomic regions from SNP 147057 to 147657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,334 DEBUG Processing 463/708 atomic regions from SNP 138624 to 139224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,350 DEBUG Processing 416/738 atomic regions from SNP 124793 to 125393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,355 DEBUG Processing 784/862 atomic regions from SNP 235023 to 235623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,503 DEBUG Processing 492/752 atomic regions from SNP 147357 to 147957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,539 DEBUG Processing 464/708 atomic regions from SNP 138924 to 139524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,552 DEBUG Processing 417/738 atomic regions from SNP 125093 to 125693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,597 DEBUG Processing 785/862 atomic regions from SNP 235323 to 235923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,705 DEBUG Processing 493/752 atomic regions from SNP 147657 to 148257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,741 DEBUG Processing 465/708 atomic regions from SNP 139224 to 139824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,752 DEBUG Processing 418/738 atomic regions from SNP 125393 to 125993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,835 DEBUG Processing 786/862 atomic regions from SNP 235623 to 236223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,905 DEBUG Processing 494/752 atomic regions from SNP 147957 to 148557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,943 DEBUG Processing 466/708 atomic regions from SNP 139524 to 140124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,952 DEBUG Processing 419/738 atomic regions from SNP 125693 to 126293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,072 DEBUG Processing 787/862 atomic regions from SNP 235923 to 236523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,106 DEBUG Processing 495/752 atomic regions from SNP 148257 to 148857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,146 DEBUG Processing 467/708 atomic regions from SNP 139824 to 140424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,151 DEBUG Processing 420/738 atomic regions from SNP 125993 to 126593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,286 DEBUG Processing 788/862 atomic regions from SNP 236223 to 236823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,306 DEBUG Processing 496/752 atomic regions from SNP 148557 to 149157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,350 DEBUG Processing 421/738 atomic regions from SNP 126293 to 126893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,358 DEBUG Processing 468/708 atomic regions from SNP 140124 to 140724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,501 DEBUG Processing 789/862 atomic regions from SNP 236523 to 237123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,508 DEBUG Processing 497/752 atomic regions from SNP 148857 to 149457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,549 DEBUG Processing 422/738 atomic regions from SNP 126593 to 127193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,574 DEBUG Processing 469/708 atomic regions from SNP 140424 to 141024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,710 DEBUG Processing 498/752 atomic regions from SNP 149157 to 149757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,715 DEBUG Processing 790/862 atomic regions from SNP 236823 to 237423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,755 DEBUG Processing 423/738 atomic regions from SNP 126893 to 127493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,778 DEBUG Processing 470/708 atomic regions from SNP 140724 to 141324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,911 DEBUG Processing 499/752 atomic regions from SNP 149457 to 150057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,927 DEBUG Processing 791/862 atomic regions from SNP 237123 to 237723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,957 DEBUG Processing 424/738 atomic regions from SNP 127193 to 127793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,983 DEBUG Processing 471/708 atomic regions from SNP 141024 to 141624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,124 DEBUG Processing 500/752 atomic regions from SNP 149757 to 150357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,146 DEBUG Processing 792/862 atomic regions from SNP 237423 to 238023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,163 DEBUG Processing 425/738 atomic regions from SNP 127493 to 128093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,193 DEBUG Processing 472/708 atomic regions from SNP 141324 to 141924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,327 DEBUG Processing 501/752 atomic regions from SNP 150057 to 150657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,362 DEBUG Processing 426/738 atomic regions from SNP 127793 to 128393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,363 DEBUG Processing 793/862 atomic regions from SNP 237723 to 238323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,398 DEBUG Processing 473/708 atomic regions from SNP 141624 to 142224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,533 DEBUG Processing 502/752 atomic regions from SNP 150357 to 150957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,565 DEBUG Processing 427/738 atomic regions from SNP 128093 to 128693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,581 DEBUG Processing 794/862 atomic regions from SNP 238023 to 238623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,603 DEBUG Processing 474/708 atomic regions from SNP 141924 to 142524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,734 DEBUG Processing 503/752 atomic regions from SNP 150657 to 151257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,762 DEBUG Processing 428/738 atomic regions from SNP 128393 to 128993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,798 DEBUG Processing 795/862 atomic regions from SNP 238323 to 238923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,808 DEBUG Processing 475/708 atomic regions from SNP 142224 to 142824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,934 DEBUG Processing 504/752 atomic regions from SNP 150957 to 151557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,960 DEBUG Processing 429/738 atomic regions from SNP 128693 to 129293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,013 DEBUG Processing 476/708 atomic regions from SNP 142524 to 143124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,018 DEBUG Processing 796/862 atomic regions from SNP 238623 to 239223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,133 DEBUG Processing 505/752 atomic regions from SNP 151257 to 151857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,156 DEBUG Processing 430/738 atomic regions from SNP 128993 to 129593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,217 DEBUG Processing 477/708 atomic regions from SNP 142824 to 143424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,238 DEBUG Processing 797/862 atomic regions from SNP 238923 to 239523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,334 DEBUG Processing 506/752 atomic regions from SNP 151557 to 152157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,365 DEBUG Processing 431/738 atomic regions from SNP 129293 to 129893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,444 DEBUG Processing 478/708 atomic regions from SNP 143124 to 143724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,462 DEBUG Processing 798/862 atomic regions from SNP 239223 to 239823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,544 DEBUG Processing 507/752 atomic regions from SNP 151857 to 152457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,582 DEBUG Processing 432/738 atomic regions from SNP 129593 to 130193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,648 DEBUG Processing 479/708 atomic regions from SNP 143424 to 144024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,682 DEBUG Processing 799/862 atomic regions from SNP 239523 to 240123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,746 DEBUG Processing 508/752 atomic regions from SNP 152157 to 152757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,783 DEBUG Processing 433/738 atomic regions from SNP 129893 to 130493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,850 DEBUG Processing 480/708 atomic regions from SNP 143724 to 144324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,908 DEBUG Processing 800/862 atomic regions from SNP 239823 to 240423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,958 DEBUG Processing 509/752 atomic regions from SNP 152457 to 153057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,989 DEBUG Processing 434/738 atomic regions from SNP 130193 to 130793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,052 DEBUG Processing 481/708 atomic regions from SNP 144024 to 144624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,125 DEBUG Processing 801/862 atomic regions from SNP 240123 to 240723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,163 DEBUG Processing 510/752 atomic regions from SNP 152757 to 153357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,193 DEBUG Processing 435/738 atomic regions from SNP 130493 to 131093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,253 DEBUG Processing 482/708 atomic regions from SNP 144324 to 144924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,340 DEBUG Processing 802/862 atomic regions from SNP 240423 to 241023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,362 DEBUG Processing 511/752 atomic regions from SNP 153057 to 153657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,404 DEBUG Processing 436/738 atomic regions from SNP 130793 to 131393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,453 DEBUG Processing 483/708 atomic regions from SNP 144624 to 145224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,555 DEBUG Processing 803/862 atomic regions from SNP 240723 to 241323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,562 DEBUG Processing 512/752 atomic regions from SNP 153357 to 153957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,627 DEBUG Processing 437/738 atomic regions from SNP 131093 to 131693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,653 DEBUG Processing 484/708 atomic regions from SNP 144924 to 145524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,761 DEBUG Processing 513/752 atomic regions from SNP 153657 to 154257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,771 DEBUG Processing 804/862 atomic regions from SNP 241023 to 241623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,828 DEBUG Processing 438/738 atomic regions from SNP 131393 to 131993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,865 DEBUG Processing 485/708 atomic regions from SNP 145224 to 145824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,961 DEBUG Processing 514/752 atomic regions from SNP 153957 to 154557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,987 DEBUG Processing 805/862 atomic regions from SNP 241323 to 241923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,029 DEBUG Processing 439/738 atomic regions from SNP 131693 to 132293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,086 DEBUG Processing 486/708 atomic regions from SNP 145524 to 146124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,161 DEBUG Processing 515/752 atomic regions from SNP 154257 to 154857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,204 DEBUG Processing 806/862 atomic regions from SNP 241623 to 242223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,231 DEBUG Processing 440/738 atomic regions from SNP 131993 to 132593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,299 DEBUG Processing 487/708 atomic regions from SNP 145824 to 146424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,363 DEBUG Processing 516/752 atomic regions from SNP 154557 to 155157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,423 DEBUG Processing 807/862 atomic regions from SNP 241923 to 242523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,433 DEBUG Processing 441/738 atomic regions from SNP 132293 to 132893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,516 DEBUG Processing 488/708 atomic regions from SNP 146124 to 146724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,564 DEBUG Processing 517/752 atomic regions from SNP 154857 to 155457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,642 DEBUG Processing 808/862 atomic regions from SNP 242223 to 242823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,647 DEBUG Processing 442/738 atomic regions from SNP 132593 to 133193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,738 DEBUG Processing 489/708 atomic regions from SNP 146424 to 147024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,786 DEBUG Processing 518/752 atomic regions from SNP 155157 to 155757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,835 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:50:25,858 DEBUG Processing 443/738 atomic regions from SNP 132893 to 133493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,860 DEBUG Processing 809/862 atomic regions from SNP 242523 to 243123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,962 DEBUG Processing 490/708 atomic regions from SNP 146724 to 147324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,007 DEBUG Processing 519/752 atomic regions from SNP 155457 to 156057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,079 DEBUG Processing 810/862 atomic regions from SNP 242823 to 243423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,082 DEBUG Processing 444/738 atomic regions from SNP 133193 to 133793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,185 DEBUG Processing 491/708 atomic regions from SNP 147024 to 147624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,210 DEBUG Processing 520/752 atomic regions from SNP 155757 to 156357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,293 DEBUG Processing 445/738 atomic regions from SNP 133493 to 134093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,300 DEBUG Processing 811/862 atomic regions from SNP 243123 to 243723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,414 DEBUG Processing 521/752 atomic regions from SNP 156057 to 156657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,414 DEBUG Processing 492/708 atomic regions from SNP 147324 to 147924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,493 DEBUG Processing 446/738 atomic regions from SNP 133793 to 134393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,517 DEBUG Processing 812/862 atomic regions from SNP 243423 to 244023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,616 DEBUG Processing 522/752 atomic regions from SNP 156357 to 156957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,620 DEBUG Processing 493/708 atomic regions from SNP 147624 to 148224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,693 DEBUG Processing 447/738 atomic regions from SNP 134093 to 134693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,734 DEBUG Processing 813/862 atomic regions from SNP 243723 to 244323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,825 DEBUG Processing 523/752 atomic regions from SNP 156657 to 157257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,832 DEBUG Processing 494/708 atomic regions from SNP 147924 to 148524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,897 DEBUG Processing 448/738 atomic regions from SNP 134393 to 134993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,949 DEBUG Processing 814/862 atomic regions from SNP 244023 to 244623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,027 DEBUG Processing 524/752 atomic regions from SNP 156957 to 157557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,038 DEBUG Processing 495/708 atomic regions from SNP 148224 to 148824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,094 DEBUG Processing 449/738 atomic regions from SNP 134693 to 135293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,161 DEBUG Processing 815/862 atomic regions from SNP 244323 to 244923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,226 DEBUG Processing 525/752 atomic regions from SNP 157257 to 157857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,268 DEBUG Processing 496/708 atomic regions from SNP 148524 to 149124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,292 DEBUG Processing 450/738 atomic regions from SNP 134993 to 135593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,376 DEBUG Processing 816/862 atomic regions from SNP 244623 to 245223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,426 DEBUG Processing 526/752 atomic regions from SNP 157557 to 158157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,491 DEBUG Processing 451/738 atomic regions from SNP 135293 to 135893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,497 DEBUG Processing 497/708 atomic regions from SNP 148824 to 149424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,588 DEBUG Processing 817/862 atomic regions from SNP 244923 to 245523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,626 DEBUG Processing 527/752 atomic regions from SNP 157857 to 158457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,689 DEBUG Processing 452/738 atomic regions from SNP 135593 to 136193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,723 DEBUG Processing 498/708 atomic regions from SNP 149124 to 149724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,799 DEBUG Processing 818/862 atomic regions from SNP 245223 to 245823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,824 DEBUG Processing 528/752 atomic regions from SNP 158157 to 158757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,887 DEBUG Processing 453/738 atomic regions from SNP 135893 to 136493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,936 DEBUG Processing 499/708 atomic regions from SNP 149424 to 150024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,012 DEBUG Processing 819/862 atomic regions from SNP 245523 to 246123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,022 DEBUG Processing 529/752 atomic regions from SNP 158457 to 159057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,085 DEBUG Processing 454/738 atomic regions from SNP 136193 to 136793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,136 DEBUG Processing 500/708 atomic regions from SNP 149724 to 150324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,222 DEBUG Processing 820/862 atomic regions from SNP 245823 to 246423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,236 DEBUG Processing 530/752 atomic regions from SNP 158757 to 159357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,283 DEBUG Processing 455/738 atomic regions from SNP 136493 to 137093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,340 DEBUG Processing 501/708 atomic regions from SNP 150024 to 150624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,434 DEBUG Processing 821/862 atomic regions from SNP 246123 to 246723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,449 DEBUG Processing 531/752 atomic regions from SNP 159057 to 159657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,481 DEBUG Processing 456/738 atomic regions from SNP 136793 to 137393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,550 DEBUG Processing 502/708 atomic regions from SNP 150324 to 150924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,647 DEBUG Processing 822/862 atomic regions from SNP 246423 to 247023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,664 DEBUG Processing 532/752 atomic regions from SNP 159357 to 159957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,687 DEBUG Processing 457/738 atomic regions from SNP 137093 to 137693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,751 DEBUG Processing 503/708 atomic regions from SNP 150624 to 151224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,863 DEBUG Processing 823/862 atomic regions from SNP 246723 to 247323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,875 DEBUG Processing 533/752 atomic regions from SNP 159657 to 160257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,886 DEBUG Processing 458/738 atomic regions from SNP 137393 to 137993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,950 DEBUG Processing 504/708 atomic regions from SNP 150924 to 151524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,079 DEBUG Processing 824/862 atomic regions from SNP 247023 to 247623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,081 DEBUG Processing 534/752 atomic regions from SNP 159957 to 160557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,087 DEBUG Processing 459/738 atomic regions from SNP 137693 to 138293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,152 DEBUG Processing 505/708 atomic regions from SNP 151224 to 151824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,294 DEBUG Processing 825/862 atomic regions from SNP 247323 to 247923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,299 DEBUG Processing 535/752 atomic regions from SNP 160257 to 160857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,307 DEBUG Processing 460/738 atomic regions from SNP 137993 to 138593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,355 DEBUG Processing 506/708 atomic regions from SNP 151524 to 152124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,507 DEBUG Processing 536/752 atomic regions from SNP 160557 to 161157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,511 DEBUG Processing 826/862 atomic regions from SNP 247623 to 248223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,534 DEBUG Processing 461/738 atomic regions from SNP 138293 to 138893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,557 DEBUG Processing 507/708 atomic regions from SNP 151824 to 152424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,709 DEBUG Processing 537/752 atomic regions from SNP 160857 to 161457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,733 DEBUG Processing 827/862 atomic regions from SNP 247923 to 248523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,759 DEBUG Processing 462/738 atomic regions from SNP 138593 to 139193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,763 DEBUG Processing 508/708 atomic regions from SNP 152124 to 152724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,911 DEBUG Processing 538/752 atomic regions from SNP 161157 to 161757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,956 DEBUG Processing 828/862 atomic regions from SNP 248223 to 248823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,970 DEBUG Processing 509/708 atomic regions from SNP 152424 to 153024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,996 DEBUG Processing 463/738 atomic regions from SNP 138893 to 139493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,112 DEBUG Processing 539/752 atomic regions from SNP 161457 to 162057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,176 DEBUG Processing 510/708 atomic regions from SNP 152724 to 153324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,178 DEBUG Processing 829/862 atomic regions from SNP 248523 to 249123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,190 DEBUG Segmenting atomic regions: 2025-01-31 09:50:30,228 DEBUG Processing 464/738 atomic regions from SNP 139193 to 139793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,280 DEBUG Processing 1/672 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:30,316 DEBUG Processing 540/752 atomic regions from SNP 161757 to 162357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,389 DEBUG Processing 511/708 atomic regions from SNP 153024 to 153624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,398 DEBUG Processing 830/862 atomic regions from SNP 248823 to 249423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,443 DEBUG Processing 465/738 atomic regions from SNP 139493 to 140093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,467 DEBUG Processing 2/672 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:30,522 DEBUG Processing 541/752 atomic regions from SNP 162057 to 162657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,594 DEBUG Processing 512/708 atomic regions from SNP 153324 to 153924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,619 DEBUG Processing 831/862 atomic regions from SNP 249123 to 249723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,653 DEBUG Processing 466/738 atomic regions from SNP 139793 to 140393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,662 DEBUG Processing 3/672 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:30,727 DEBUG Processing 542/752 atomic regions from SNP 162357 to 162957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,799 DEBUG Processing 513/708 atomic regions from SNP 153624 to 154224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,838 DEBUG Processing 832/862 atomic regions from SNP 249423 to 250023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,860 DEBUG Processing 4/672 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:30,890 DEBUG Processing 467/738 atomic regions from SNP 140093 to 140693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,931 DEBUG Processing 543/752 atomic regions from SNP 162657 to 163257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,001 DEBUG Processing 514/708 atomic regions from SNP 153924 to 154524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,058 DEBUG Processing 833/862 atomic regions from SNP 249723 to 250323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,074 DEBUG Processing 5/672 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,128 DEBUG Processing 468/738 atomic regions from SNP 140393 to 140993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,137 DEBUG Processing 544/752 atomic regions from SNP 162957 to 163557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,202 DEBUG Processing 515/708 atomic regions from SNP 154224 to 154824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,273 DEBUG Processing 6/672 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,277 DEBUG Processing 834/862 atomic regions from SNP 250023 to 250623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,344 DEBUG Processing 545/752 atomic regions from SNP 163257 to 163857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,361 DEBUG Processing 469/738 atomic regions from SNP 140693 to 141293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,405 DEBUG Processing 516/708 atomic regions from SNP 154524 to 155124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,462 DEBUG Processing 7/672 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,494 DEBUG Processing 835/862 atomic regions from SNP 250323 to 250923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,557 DEBUG Processing 546/752 atomic regions from SNP 163557 to 164157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,590 DEBUG Processing 470/738 atomic regions from SNP 140993 to 141593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,609 DEBUG Processing 517/708 atomic regions from SNP 154824 to 155424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,651 DEBUG Processing 8/672 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,712 DEBUG Processing 836/862 atomic regions from SNP 250623 to 251223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,764 DEBUG Processing 547/752 atomic regions from SNP 163857 to 164457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,795 DEBUG Processing 471/738 atomic regions from SNP 141293 to 141893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,815 DEBUG Processing 518/708 atomic regions from SNP 155124 to 155724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,840 DEBUG Processing 9/672 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,932 DEBUG Processing 837/862 atomic regions from SNP 250923 to 251523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,971 DEBUG Processing 548/752 atomic regions from SNP 164157 to 164757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,011 DEBUG Processing 472/738 atomic regions from SNP 141593 to 142193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,031 DEBUG Processing 519/708 atomic regions from SNP 155424 to 156024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,033 DEBUG Processing 10/672 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,156 DEBUG Processing 838/862 atomic regions from SNP 251223 to 251823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,179 DEBUG Processing 549/752 atomic regions from SNP 164457 to 165057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,219 DEBUG Processing 473/738 atomic regions from SNP 141893 to 142493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,224 DEBUG Processing 11/672 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,243 DEBUG Processing 520/708 atomic regions from SNP 155724 to 156324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,380 DEBUG Processing 839/862 atomic regions from SNP 251523 to 252123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,387 DEBUG Processing 550/752 atomic regions from SNP 164757 to 165357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,420 DEBUG Processing 12/672 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,426 DEBUG Processing 474/738 atomic regions from SNP 142193 to 142793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,467 DEBUG Processing 521/708 atomic regions from SNP 156024 to 156624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,593 DEBUG Processing 551/752 atomic regions from SNP 165057 to 165657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,603 DEBUG Processing 840/862 atomic regions from SNP 251823 to 252423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,610 DEBUG Processing 13/672 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,630 DEBUG Processing 475/738 atomic regions from SNP 142493 to 143093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,673 DEBUG Processing 522/708 atomic regions from SNP 156324 to 156924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,799 DEBUG Processing 14/672 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,805 DEBUG Processing 552/752 atomic regions from SNP 165357 to 165957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,825 DEBUG Processing 841/862 atomic regions from SNP 252123 to 252723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,834 DEBUG Processing 476/738 atomic regions from SNP 142793 to 143393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,884 DEBUG Processing 523/708 atomic regions from SNP 156624 to 157224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,988 DEBUG Processing 15/672 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,010 DEBUG Processing 553/752 atomic regions from SNP 165657 to 166257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,039 DEBUG Processing 477/738 atomic regions from SNP 143093 to 143693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,046 DEBUG Processing 842/862 atomic regions from SNP 252423 to 253023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,093 DEBUG Processing 524/708 atomic regions from SNP 156924 to 157524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,176 DEBUG Processing 16/672 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,213 DEBUG Processing 554/752 atomic regions from SNP 165957 to 166557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,243 DEBUG Processing 478/738 atomic regions from SNP 143393 to 143993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,269 DEBUG Processing 843/862 atomic regions from SNP 252723 to 253323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,303 DEBUG Processing 525/708 atomic regions from SNP 157224 to 157824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,362 DEBUG Processing 17/672 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,414 DEBUG Processing 555/752 atomic regions from SNP 166257 to 166857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,447 DEBUG Processing 479/738 atomic regions from SNP 143693 to 144293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,490 DEBUG Processing 844/862 atomic regions from SNP 253023 to 253623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,510 DEBUG Processing 526/708 atomic regions from SNP 157524 to 158124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,551 DEBUG Processing 18/672 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,617 DEBUG Processing 556/752 atomic regions from SNP 166557 to 167157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,656 DEBUG Processing 480/738 atomic regions from SNP 143993 to 144593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,716 DEBUG Processing 845/862 atomic regions from SNP 253323 to 253923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,723 DEBUG Processing 527/708 atomic regions from SNP 157824 to 158424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,739 DEBUG Processing 19/672 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,819 DEBUG Processing 557/752 atomic regions from SNP 166857 to 167457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,857 DEBUG Processing 481/738 atomic regions from SNP 144293 to 144893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,929 DEBUG Processing 20/672 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,943 DEBUG Processing 528/708 atomic regions from SNP 158124 to 158724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,963 DEBUG Processing 846/862 atomic regions from SNP 253623 to 254223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,021 DEBUG Processing 558/752 atomic regions from SNP 167157 to 167757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,057 DEBUG Processing 482/738 atomic regions from SNP 144593 to 145193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,116 DEBUG Processing 21/672 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:34,175 DEBUG Processing 529/708 atomic regions from SNP 158424 to 159024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,201 DEBUG Processing 847/862 atomic regions from SNP 253923 to 254523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,223 DEBUG Processing 559/752 atomic regions from SNP 167457 to 168057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,258 DEBUG Processing 483/738 atomic regions from SNP 144893 to 145493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,304 DEBUG Processing 22/672 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:34,406 DEBUG Processing 530/708 atomic regions from SNP 158724 to 159324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,424 DEBUG Processing 560/752 atomic regions from SNP 167757 to 168357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,435 DEBUG Processing 848/862 atomic regions from SNP 254223 to 254823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,460 DEBUG Processing 484/738 atomic regions from SNP 145193 to 145793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,492 DEBUG Processing 23/672 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:34,626 DEBUG Processing 561/752 atomic regions from SNP 168057 to 168657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,627 DEBUG Processing 531/708 atomic regions from SNP 159024 to 159624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,661 DEBUG Processing 849/862 atomic regions from SNP 254523 to 255123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,663 DEBUG Processing 485/738 atomic regions from SNP 145493 to 146093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,682 DEBUG Processing 24/672 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:34,828 DEBUG Processing 562/752 atomic regions from SNP 168357 to 168957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,840 DEBUG Processing 532/708 atomic regions from SNP 159324 to 159924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,865 DEBUG Processing 486/738 atomic regions from SNP 145793 to 146393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,871 DEBUG Processing 25/672 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:34,885 DEBUG Processing 850/862 atomic regions from SNP 254823 to 255423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,034 DEBUG Processing 563/752 atomic regions from SNP 168657 to 169257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,052 DEBUG Processing 533/708 atomic regions from SNP 159624 to 160224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,063 DEBUG Processing 26/672 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,073 DEBUG Processing 487/738 atomic regions from SNP 146093 to 146693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,112 DEBUG Processing 851/862 atomic regions from SNP 255123 to 255723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,239 DEBUG Processing 564/752 atomic regions from SNP 168957 to 169557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,255 DEBUG Processing 27/672 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,263 DEBUG Processing 534/708 atomic regions from SNP 159924 to 160524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,288 DEBUG Processing 488/738 atomic regions from SNP 146393 to 146993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,338 DEBUG Processing 852/862 atomic regions from SNP 255423 to 256023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,447 DEBUG Processing 565/752 atomic regions from SNP 169257 to 169857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,447 DEBUG Processing 28/672 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,479 DEBUG Processing 535/708 atomic regions from SNP 160224 to 160824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,516 DEBUG Processing 489/738 atomic regions from SNP 146693 to 147293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,561 DEBUG Processing 853/862 atomic regions from SNP 255723 to 256323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,634 DEBUG Processing 29/672 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,673 DEBUG Processing 566/752 atomic regions from SNP 169557 to 170157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,688 DEBUG Processing 536/708 atomic regions from SNP 160524 to 161124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,731 DEBUG Processing 490/738 atomic regions from SNP 146993 to 147593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,782 DEBUG Processing 854/862 atomic regions from SNP 256023 to 256623 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,819 DEBUG Processing 30/672 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,890 DEBUG Processing 567/752 atomic regions from SNP 169857 to 170457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,892 DEBUG Processing 537/708 atomic regions from SNP 160824 to 161424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,933 DEBUG Processing 491/738 atomic regions from SNP 147293 to 147893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,003 DEBUG Processing 855/862 atomic regions from SNP 256323 to 256923 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,006 DEBUG Processing 31/672 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,094 DEBUG Processing 568/752 atomic regions from SNP 170157 to 170757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,097 DEBUG Processing 538/708 atomic regions from SNP 161124 to 161724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,136 DEBUG Processing 492/738 atomic regions from SNP 147593 to 148193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,194 DEBUG Processing 32/672 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,228 DEBUG Processing 856/862 atomic regions from SNP 256623 to 257223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,295 DEBUG Processing 569/752 atomic regions from SNP 170457 to 171057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,300 DEBUG Processing 539/708 atomic regions from SNP 161424 to 162024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,337 DEBUG Processing 493/738 atomic regions from SNP 147893 to 148493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,385 DEBUG Processing 33/672 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,457 DEBUG Processing 857/862 atomic regions from SNP 256923 to 257523 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,496 DEBUG Processing 570/752 atomic regions from SNP 170757 to 171357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,506 DEBUG Processing 540/708 atomic regions from SNP 161724 to 162324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,540 DEBUG Processing 494/738 atomic regions from SNP 148193 to 148793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,571 DEBUG Processing 34/672 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,687 DEBUG Processing 858/862 atomic regions from SNP 257223 to 257823 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,700 DEBUG Processing 571/752 atomic regions from SNP 171057 to 171657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,714 DEBUG Processing 541/708 atomic regions from SNP 162024 to 162624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,744 DEBUG Processing 495/738 atomic regions from SNP 148493 to 149093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,758 DEBUG Processing 35/672 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,904 DEBUG Processing 572/752 atomic regions from SNP 171357 to 171957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,917 DEBUG Processing 859/862 atomic regions from SNP 257523 to 258123 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,934 DEBUG Processing 542/708 atomic regions from SNP 162324 to 162924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,948 DEBUG Processing 36/672 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,948 DEBUG Processing 496/738 atomic regions from SNP 148793 to 149393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,107 DEBUG Processing 573/752 atomic regions from SNP 171657 to 172257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,141 DEBUG Processing 37/672 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,152 DEBUG Processing 497/738 atomic regions from SNP 149093 to 149693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,154 DEBUG Processing 543/708 atomic regions from SNP 162624 to 163224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,164 DEBUG Processing 860/862 atomic regions from SNP 257823 to 258423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,309 DEBUG Processing 574/752 atomic regions from SNP 171957 to 172557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,331 DEBUG Processing 38/672 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,354 DEBUG Processing 498/738 atomic regions from SNP 149393 to 149993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,366 DEBUG Processing 544/708 atomic regions from SNP 162924 to 163524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,411 DEBUG Processing 861/862 atomic regions from SNP 258123 to 258723 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,511 DEBUG Processing 575/752 atomic regions from SNP 172257 to 172857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,518 DEBUG Processing 39/672 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,554 DEBUG Processing 499/738 atomic regions from SNP 149693 to 150293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,578 DEBUG Processing 545/708 atomic regions from SNP 163224 to 163824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,645 DEBUG Processing 862/862 atomic regions from SNP 258423 to 259023 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,712 DEBUG Processing 40/672 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,717 DEBUG Processing 576/752 atomic regions from SNP 172557 to 173157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,756 DEBUG Processing 500/738 atomic regions from SNP 149993 to 150593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,763 DEBUG Unique SNPs positions in subchromosome 1: 259024 2025-01-31 09:50:37,790 DEBUG Processing 546/708 atomic regions from SNP 163524 to 164124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,904 DEBUG Processing 41/672 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,924 DEBUG Processing 577/752 atomic regions from SNP 172857 to 173457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,960 DEBUG Processing 501/738 atomic regions from SNP 150293 to 150893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,994 DEBUG Processing 547/708 atomic regions from SNP 163824 to 164424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,094 DEBUG Processing 42/672 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:38,129 DEBUG Processing 578/752 atomic regions from SNP 173157 to 173757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,161 DEBUG Processing 502/738 atomic regions from SNP 150593 to 151193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,197 DEBUG Processing 548/708 atomic regions from SNP 164124 to 164724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,282 DEBUG Processing 43/672 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:38,334 DEBUG Processing 579/752 atomic regions from SNP 173457 to 174057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,361 DEBUG Processing 503/738 atomic regions from SNP 150893 to 151493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,400 DEBUG Processing 549/708 atomic regions from SNP 164424 to 165024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,469 DEBUG Processing 44/672 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:38,536 DEBUG Processing 580/752 atomic regions from SNP 173757 to 174357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,563 DEBUG Processing 504/738 atomic regions from SNP 151193 to 151793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,605 DEBUG Processing 550/708 atomic regions from SNP 164724 to 165324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,653 DEBUG Processing 45/672 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:38,743 DEBUG Processing 581/752 atomic regions from SNP 174057 to 174657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,764 DEBUG Processing 505/738 atomic regions from SNP 151493 to 152093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,820 DEBUG Processing 551/708 atomic regions from SNP 165024 to 165624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,839 DEBUG Processing 46/672 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:38,949 DEBUG Processing 582/752 atomic regions from SNP 174357 to 174957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,976 DEBUG Processing 506/738 atomic regions from SNP 151793 to 152393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,029 DEBUG Processing 552/708 atomic regions from SNP 165324 to 165924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,030 DEBUG Processing 47/672 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,165 DEBUG Processing 583/752 atomic regions from SNP 174657 to 175257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,184 DEBUG Processing 507/738 atomic regions from SNP 152093 to 152693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,223 DEBUG Processing 48/672 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,239 DEBUG Processing 553/708 atomic regions from SNP 165624 to 166224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,370 DEBUG Processing 584/752 atomic regions from SNP 174957 to 175557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,388 DEBUG Processing 508/738 atomic regions from SNP 152393 to 152993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,414 DEBUG Processing 49/672 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,449 DEBUG Processing 554/708 atomic regions from SNP 165924 to 166524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,575 DEBUG Processing 585/752 atomic regions from SNP 175257 to 175857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,593 DEBUG Processing 509/738 atomic regions from SNP 152693 to 153293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,606 DEBUG Processing 50/672 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,658 DEBUG Processing 555/708 atomic regions from SNP 166224 to 166824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,779 DEBUG Processing 586/752 atomic regions from SNP 175557 to 176157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,798 DEBUG Processing 510/738 atomic regions from SNP 152993 to 153593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,799 DEBUG Processing 51/672 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,863 DEBUG Processing 556/708 atomic regions from SNP 166524 to 167124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,911 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:50:39,912 DEBUG chr9: Signal quantile: 0.991. signal threshold: 14. Best RMSEA: 0.014 2025-01-31 09:50:39,990 DEBUG Processing 587/752 atomic regions from SNP 175857 to 176457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,992 DEBUG Processing 52/672 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,002 DEBUG Processing 511/738 atomic regions from SNP 153293 to 153893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,073 DEBUG Processing 557/708 atomic regions from SNP 166824 to 167424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,190 DEBUG Processing 53/672 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,194 DEBUG Processing 588/752 atomic regions from SNP 176157 to 176757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,207 DEBUG Processing 512/738 atomic regions from SNP 153593 to 154193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,303 DEBUG Processing 558/708 atomic regions from SNP 167124 to 167724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,383 DEBUG Processing 54/672 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,401 DEBUG Processing 589/752 atomic regions from SNP 176457 to 177057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,413 DEBUG Processing 513/738 atomic regions from SNP 153893 to 154493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,541 DEBUG Processing 559/708 atomic regions from SNP 167424 to 168024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,573 DEBUG Processing 55/672 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,608 DEBUG Processing 590/752 atomic regions from SNP 176757 to 177357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,616 DEBUG Processing 514/738 atomic regions from SNP 154193 to 154793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,755 DEBUG Processing 560/708 atomic regions from SNP 167724 to 168324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,763 DEBUG Processing 56/672 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,813 DEBUG Processing 591/752 atomic regions from SNP 177057 to 177657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,820 DEBUG Processing 515/738 atomic regions from SNP 154493 to 155093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,954 DEBUG Processing 57/672 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,957 DEBUG Processing 561/708 atomic regions from SNP 168024 to 168624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,023 DEBUG Processing 592/752 atomic regions from SNP 177357 to 177957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,024 DEBUG Processing 516/738 atomic regions from SNP 154793 to 155393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,143 DEBUG Processing 58/672 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,160 DEBUG Processing 562/708 atomic regions from SNP 168324 to 168924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,228 DEBUG Processing 517/738 atomic regions from SNP 155093 to 155693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,228 DEBUG Processing 593/752 atomic regions from SNP 177657 to 178257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,332 DEBUG Processing 59/672 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,363 DEBUG Processing 563/708 atomic regions from SNP 168624 to 169224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,430 DEBUG Processing 518/738 atomic regions from SNP 155393 to 155993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,431 DEBUG Processing 594/752 atomic regions from SNP 177957 to 178557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,516 DEBUG Processing 60/672 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,566 DEBUG Processing 564/708 atomic regions from SNP 168924 to 169524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,632 DEBUG Processing 519/738 atomic regions from SNP 155693 to 156293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,635 DEBUG Processing 595/752 atomic regions from SNP 178257 to 178857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,700 DEBUG Processing 61/672 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,773 DEBUG Processing 565/708 atomic regions from SNP 169224 to 169824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,836 DEBUG Processing 520/738 atomic regions from SNP 155993 to 156593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,839 DEBUG Processing 596/752 atomic regions from SNP 178557 to 179157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,889 DEBUG Processing 62/672 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,936 DEBUG chr9 total SNP count: 218621 2025-01-31 09:50:41,937 DEBUG chr9 length: 124595110 2025-01-31 09:50:41,937 DEBUG ----------------------------------------- 2025-01-31 09:50:41,937 INFO Processing SNPs in chr9 2025-01-31 09:50:41,991 DEBUG Processing 566/708 atomic regions from SNP 169524 to 170124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,040 DEBUG Processing 521/738 atomic regions from SNP 156293 to 156893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,044 DEBUG Processing 597/752 atomic regions from SNP 178857 to 179457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,076 DEBUG Processing 63/672 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:42,146 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 218621)] 2025-01-31 09:50:42,194 DEBUG Processing 567/708 atomic regions from SNP 169824 to 170424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,243 DEBUG Processing 522/738 atomic regions from SNP 156593 to 157193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,248 DEBUG Processing 598/752 atomic regions from SNP 179157 to 179757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,285 DEBUG Processing 64/672 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:42,292 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:42,395 DEBUG Processing 568/708 atomic regions from SNP 170124 to 170724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,447 DEBUG Processing 523/738 atomic regions from SNP 156893 to 157493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,453 DEBUG Processing 599/752 atomic regions from SNP 179457 to 180057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,491 DEBUG Processing 65/672 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:42,596 DEBUG Processing 569/708 atomic regions from SNP 170424 to 171024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,652 DEBUG Processing 524/738 atomic regions from SNP 157193 to 157793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,657 DEBUG Processing 600/752 atomic regions from SNP 179757 to 180357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,680 DEBUG Processing 66/672 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:42,797 DEBUG Processing 570/708 atomic regions from SNP 170724 to 171324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,860 DEBUG Processing 601/752 atomic regions from SNP 180057 to 180657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,868 DEBUG Processing 67/672 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:42,869 DEBUG Processing 525/738 atomic regions from SNP 157493 to 158093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,998 DEBUG Processing 571/708 atomic regions from SNP 171024 to 171624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,056 DEBUG Processing 68/672 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,066 DEBUG Processing 602/752 atomic regions from SNP 180357 to 180957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,097 DEBUG Processing 526/738 atomic regions from SNP 157793 to 158393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,207 DEBUG Processing 572/708 atomic regions from SNP 171324 to 171924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,244 DEBUG Processing 69/672 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,270 DEBUG Processing 603/752 atomic regions from SNP 180657 to 181257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,318 DEBUG Processing 527/738 atomic regions from SNP 158093 to 158693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,411 DEBUG Processing 573/708 atomic regions from SNP 171624 to 172224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,432 DEBUG Processing 70/672 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,474 DEBUG Processing 604/752 atomic regions from SNP 180957 to 181557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,534 DEBUG Processing 528/738 atomic regions from SNP 158393 to 158993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,617 DEBUG Processing 71/672 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,630 DEBUG Processing 574/708 atomic regions from SNP 171924 to 172524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,675 DEBUG Processing 605/752 atomic regions from SNP 181257 to 181857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,748 DEBUG Processing 529/738 atomic regions from SNP 158693 to 159293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,828 DEBUG Processing 72/672 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,843 DEBUG Processing 575/708 atomic regions from SNP 172224 to 172824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,882 DEBUG Processing 606/752 atomic regions from SNP 181557 to 182157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,979 DEBUG Processing 530/738 atomic regions from SNP 158993 to 159593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,031 DEBUG Processing 73/672 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:44,050 DEBUG Processing 576/708 atomic regions from SNP 172524 to 173124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,084 DEBUG Processing 607/752 atomic regions from SNP 181857 to 182457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,208 DEBUG Processing 531/738 atomic regions from SNP 159293 to 159893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,245 DEBUG Processing 74/672 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:44,257 DEBUG Processing 577/708 atomic regions from SNP 172824 to 173424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,287 DEBUG Processing 608/752 atomic regions from SNP 182157 to 182757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,425 DEBUG Processing 532/738 atomic regions from SNP 159593 to 160193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,461 DEBUG Processing 75/672 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:44,467 DEBUG Processing 578/708 atomic regions from SNP 173124 to 173724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,490 DEBUG Processing 609/752 atomic regions from SNP 182457 to 183057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,644 DEBUG Processing 533/738 atomic regions from SNP 159893 to 160493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,676 DEBUG Processing 579/708 atomic regions from SNP 173424 to 174024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,679 DEBUG Processing 76/672 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:44,692 DEBUG Processing 610/752 atomic regions from SNP 182757 to 183357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,862 DEBUG Processing 534/738 atomic regions from SNP 160193 to 160793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,881 DEBUG Processing 580/708 atomic regions from SNP 173724 to 174324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,897 DEBUG Processing 611/752 atomic regions from SNP 183057 to 183657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,898 DEBUG Processing 77/672 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,077 DEBUG Processing 535/738 atomic regions from SNP 160493 to 161093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,084 DEBUG Processing 581/708 atomic regions from SNP 174024 to 174624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,101 DEBUG Processing 612/752 atomic regions from SNP 183357 to 183957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,121 DEBUG Processing 78/672 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,288 DEBUG Processing 582/708 atomic regions from SNP 174324 to 174924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,303 DEBUG Processing 536/738 atomic regions from SNP 160793 to 161393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,303 DEBUG Processing 613/752 atomic regions from SNP 183657 to 184257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,342 DEBUG Processing 79/672 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,493 DEBUG Processing 583/708 atomic regions from SNP 174624 to 175224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,508 DEBUG Processing 614/752 atomic regions from SNP 183957 to 184557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,520 DEBUG Processing 537/738 atomic regions from SNP 161093 to 161693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,561 DEBUG Processing 80/672 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,699 DEBUG Processing 584/708 atomic regions from SNP 174924 to 175524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,717 DEBUG Processing 615/752 atomic regions from SNP 184257 to 184857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,720 DEBUG Processing 538/738 atomic regions from SNP 161393 to 161993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,758 DEBUG Processing 81/672 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,905 DEBUG Processing 585/708 atomic regions from SNP 175224 to 175824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,921 DEBUG Processing 616/752 atomic regions from SNP 184557 to 185157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,923 DEBUG Processing 539/738 atomic regions from SNP 161693 to 162293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,947 DEBUG Processing 82/672 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,123 DEBUG Processing 617/752 atomic regions from SNP 184857 to 185457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,124 DEBUG Processing 540/738 atomic regions from SNP 161993 to 162593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,124 DEBUG Processing 586/708 atomic regions from SNP 175524 to 176124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,165 DEBUG Processing 83/672 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,327 DEBUG Processing 541/738 atomic regions from SNP 162293 to 162893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,327 DEBUG Processing 618/752 atomic regions from SNP 185157 to 185757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,354 DEBUG Processing 587/708 atomic regions from SNP 175824 to 176424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,378 DEBUG Processing 84/672 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,532 DEBUG Processing 542/738 atomic regions from SNP 162593 to 163193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,533 DEBUG Processing 619/752 atomic regions from SNP 185457 to 186057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,575 DEBUG Processing 588/708 atomic regions from SNP 176124 to 176724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,597 DEBUG Processing 85/672 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,732 DEBUG Processing 543/738 atomic regions from SNP 162893 to 163493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,735 DEBUG Processing 620/752 atomic regions from SNP 185757 to 186357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,791 DEBUG Processing 589/708 atomic regions from SNP 176424 to 177024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,807 DEBUG Processing 86/672 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,931 DEBUG Processing 544/738 atomic regions from SNP 163193 to 163793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,935 DEBUG Processing 621/752 atomic regions from SNP 186057 to 186657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,002 DEBUG Processing 87/672 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,011 DEBUG Processing 590/708 atomic regions from SNP 176724 to 177324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,135 DEBUG Processing 545/738 atomic regions from SNP 163493 to 164093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,140 DEBUG Processing 622/752 atomic regions from SNP 186357 to 186957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,194 DEBUG Processing 88/672 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,240 DEBUG Processing 591/708 atomic regions from SNP 177024 to 177624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,337 DEBUG Processing 546/738 atomic regions from SNP 163793 to 164393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,340 DEBUG Processing 623/752 atomic regions from SNP 186657 to 187257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,380 DEBUG Processing 89/672 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,476 DEBUG Processing 592/708 atomic regions from SNP 177324 to 177924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,538 DEBUG Processing 547/738 atomic regions from SNP 164093 to 164693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,541 DEBUG Processing 624/752 atomic regions from SNP 186957 to 187557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,548 DEBUG Subchromosome time: 231.09406983852386, subchromosome SNPs: 259024 2025-01-31 09:50:47,549 DEBUG Estimated BADs: [1.43, 0.71, 2.86, 1.43, 4.29, 1.43, 0.48, 1.43, 7.15, 1.43, 0.71, 1.43, 0.48, 4.29, 1.43, 0.71, 5.72, 1.43, 4.29, 2.86, 1.43, 0.71, 5.72, 2.86, 8.58, 2.86, 0.71, 1.43] SNP counts: [10622, 32614, 13083, 5704, 1814, 8042, 3965, 2289, 388, 20991, 12698, 2897, 2909, 3403, 3311, 15015, 880, 4390, 6409, 3907, 23089, 15419, 1480, 19320, 986, 6859, 7202, 29338] SNP IDs counts: [10622, 32614, 13083, 5704, 1814, 8042, 3965, 2289, 388, 20991, 12698, 2897, 2909, 3403, 3311, 15015, 880, 4390, 6409, 3907, 23089, 15419, 1480, 19320, 986, 6859, 7202, 29338] Critical gap: 661467bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.18Mbp, 28.25Mbp, 35.25Mbp, 38.43Mbp, 39.37Mbp, 44.00Mbp, 46.27Mbp, 47.59Mbp, 47.93Mbp, 59.52Mbp, 66.96Mbp, 68.72Mbp, 70.71Mbp, 72.51Mbp, 74.36Mbp, 82.99Mbp, 83.45Mbp, 85.91Mbp, 89.28Mbp, 91.46Mbp, 104.01Mbp, 112.83Mbp, 113.60Mbp, 124.66Mbp, 125.19Mbp, 128.85Mbp, 133.50Mbp, 149.74Mbp] 2025-01-31 09:50:47,549 DEBUG chr6 time: 231.09459125809371 s 2025-01-31 09:50:47,567 DEBUG Processing 90/672 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,685 DEBUG chr6: Fitting background model for 28 segments 2025-01-31 09:50:47,718 DEBUG Processing 593/708 atomic regions from SNP 177624 to 178224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,740 DEBUG Processing 548/738 atomic regions from SNP 164393 to 164993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,744 DEBUG Processing 625/752 atomic regions from SNP 187257 to 187857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,753 DEBUG Processing 91/672 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,941 DEBUG Processing 92/672 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,945 DEBUG Processing 549/738 atomic regions from SNP 164693 to 165293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,948 DEBUG Processing 626/752 atomic regions from SNP 187557 to 188157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,960 DEBUG Processing 594/708 atomic regions from SNP 177924 to 178524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,130 DEBUG Processing 93/672 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,149 DEBUG Processing 550/738 atomic regions from SNP 164993 to 165593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,149 DEBUG Processing 627/752 atomic regions from SNP 187857 to 188457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,208 DEBUG Processing 595/708 atomic regions from SNP 178224 to 178824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,319 DEBUG Processing 94/672 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,351 DEBUG Processing 551/738 atomic regions from SNP 165293 to 165893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,352 DEBUG Processing 628/752 atomic regions from SNP 188157 to 188757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,450 DEBUG Processing 596/708 atomic regions from SNP 178524 to 179124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,506 DEBUG Processing 95/672 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,552 DEBUG Processing 552/738 atomic regions from SNP 165593 to 166193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,554 DEBUG Processing 629/752 atomic regions from SNP 188457 to 189057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,689 DEBUG Processing 597/708 atomic regions from SNP 178824 to 179424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,692 DEBUG Processing 96/672 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,753 DEBUG Processing 553/738 atomic regions from SNP 165893 to 166493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,756 DEBUG Processing 630/752 atomic regions from SNP 188757 to 189357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,878 DEBUG Processing 97/672 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,927 DEBUG Processing 598/708 atomic regions from SNP 179124 to 179724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,959 DEBUG Processing 631/752 atomic regions from SNP 189057 to 189657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,960 DEBUG Processing 554/738 atomic regions from SNP 166193 to 166793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,064 DEBUG Processing 98/672 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:49,160 DEBUG Processing 632/752 atomic regions from SNP 189357 to 189957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,162 DEBUG Processing 555/738 atomic regions from SNP 166493 to 167093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,166 DEBUG Processing 599/708 atomic regions from SNP 179424 to 180024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,248 DEBUG Processing 99/672 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:49,363 DEBUG Processing 633/752 atomic regions from SNP 189657 to 190257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,365 DEBUG Processing 556/738 atomic regions from SNP 166793 to 167393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,410 DEBUG Processing 600/708 atomic regions from SNP 179724 to 180324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,435 DEBUG Processing 100/672 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:49,565 DEBUG Processing 634/752 atomic regions from SNP 189957 to 190557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,566 DEBUG Processing 557/738 atomic regions from SNP 167093 to 167693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,624 DEBUG Processing 101/672 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:49,659 DEBUG Processing 601/708 atomic regions from SNP 180024 to 180624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,766 DEBUG Processing 558/738 atomic regions from SNP 167393 to 167993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,768 DEBUG Processing 635/752 atomic regions from SNP 190257 to 190857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,819 DEBUG Processing 102/672 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:49,907 DEBUG Processing 602/708 atomic regions from SNP 180324 to 180924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,969 DEBUG Processing 559/738 atomic regions from SNP 167693 to 168293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,971 DEBUG Processing 636/752 atomic regions from SNP 190557 to 191157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,005 DEBUG Processing 103/672 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,132 DEBUG Processing 603/708 atomic regions from SNP 180624 to 181224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,173 DEBUG Processing 560/738 atomic regions from SNP 167993 to 168593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,177 DEBUG Processing 637/752 atomic regions from SNP 190857 to 191457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,194 DEBUG Processing 104/672 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,365 DEBUG Processing 604/708 atomic regions from SNP 180924 to 181524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,377 DEBUG Processing 561/738 atomic regions from SNP 168293 to 168893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,384 DEBUG Processing 105/672 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,386 DEBUG Processing 638/752 atomic regions from SNP 191157 to 191757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,582 DEBUG Processing 106/672 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,584 DEBUG Processing 562/738 atomic regions from SNP 168593 to 169193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,594 DEBUG Processing 639/752 atomic regions from SNP 191457 to 192057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,610 DEBUG Processing 605/708 atomic regions from SNP 181224 to 181824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,788 DEBUG Processing 563/738 atomic regions from SNP 168893 to 169493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,790 DEBUG Processing 107/672 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,799 DEBUG Processing 640/752 atomic regions from SNP 191757 to 192357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,845 DEBUG Processing 606/708 atomic regions from SNP 181524 to 182124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,991 DEBUG Processing 564/738 atomic regions from SNP 169193 to 169793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,005 DEBUG Processing 641/752 atomic regions from SNP 192057 to 192657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,006 DEBUG Processing 108/672 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,081 DEBUG Processing 607/708 atomic regions from SNP 181824 to 182424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,195 DEBUG Processing 565/738 atomic regions from SNP 169493 to 170093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,205 DEBUG Processing 109/672 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,210 DEBUG Processing 642/752 atomic regions from SNP 192357 to 192957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,296 DEBUG Processing 608/708 atomic regions from SNP 182124 to 182724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,393 DEBUG Processing 110/672 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,398 DEBUG Processing 566/738 atomic regions from SNP 169793 to 170393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,413 DEBUG Processing 643/752 atomic regions from SNP 192657 to 193257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,508 DEBUG Processing 609/708 atomic regions from SNP 182424 to 183024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,593 DEBUG Processing 111/672 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,600 DEBUG Processing 567/738 atomic regions from SNP 170093 to 170693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,617 DEBUG Processing 644/752 atomic regions from SNP 192957 to 193557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,716 DEBUG Processing 610/708 atomic regions from SNP 182724 to 183324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,803 DEBUG Processing 568/738 atomic regions from SNP 170393 to 170993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,805 DEBUG Processing 112/672 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,821 DEBUG Processing 645/752 atomic regions from SNP 193257 to 193857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,926 DEBUG Processing 611/708 atomic regions from SNP 183024 to 183624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,000 DEBUG Processing 113/672 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,006 DEBUG Processing 569/738 atomic regions from SNP 170693 to 171293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,022 DEBUG Processing 646/752 atomic regions from SNP 193557 to 194157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,134 DEBUG Processing 612/708 atomic regions from SNP 183324 to 183924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,206 DEBUG Processing 114/672 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,210 DEBUG Processing 570/738 atomic regions from SNP 170993 to 171593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,227 DEBUG Processing 647/752 atomic regions from SNP 193857 to 194457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,339 DEBUG Processing 613/708 atomic regions from SNP 183624 to 184224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,400 DEBUG Processing 115/672 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,413 DEBUG Processing 571/738 atomic regions from SNP 171293 to 171893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,431 DEBUG Processing 648/752 atomic regions from SNP 194157 to 194757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,542 DEBUG Processing 614/708 atomic regions from SNP 183924 to 184524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,588 DEBUG Processing 116/672 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,615 DEBUG Processing 572/738 atomic regions from SNP 171593 to 172193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,630 DEBUG Processing 649/752 atomic regions from SNP 194457 to 195057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,750 DEBUG Processing 615/708 atomic regions from SNP 184224 to 184824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,773 DEBUG Processing 117/672 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,816 DEBUG Processing 573/738 atomic regions from SNP 171893 to 172493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,831 DEBUG Processing 650/752 atomic regions from SNP 194757 to 195357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,958 DEBUG Processing 118/672 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,961 DEBUG Processing 616/708 atomic regions from SNP 184524 to 185124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,014 DEBUG Processing 574/738 atomic regions from SNP 172193 to 172793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,031 DEBUG Processing 651/752 atomic regions from SNP 195057 to 195657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,152 DEBUG Processing 119/672 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:53,172 DEBUG Processing 617/708 atomic regions from SNP 184824 to 185424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,215 DEBUG Processing 575/738 atomic regions from SNP 172493 to 173093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,233 DEBUG Processing 652/752 atomic regions from SNP 195357 to 195957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,339 DEBUG Processing 120/672 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:53,392 DEBUG Processing 618/708 atomic regions from SNP 185124 to 185724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,418 DEBUG Processing 576/738 atomic regions from SNP 172793 to 173393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,436 DEBUG Processing 653/752 atomic regions from SNP 195657 to 196257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,523 DEBUG Processing 121/672 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:53,616 DEBUG Processing 619/708 atomic regions from SNP 185424 to 186024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,620 DEBUG Processing 577/738 atomic regions from SNP 173093 to 173693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,642 DEBUG Processing 654/752 atomic regions from SNP 195957 to 196557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,710 DEBUG Processing 122/672 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:53,824 DEBUG Processing 578/738 atomic regions from SNP 173393 to 173993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,848 DEBUG Processing 655/752 atomic regions from SNP 196257 to 196857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,857 DEBUG Processing 620/708 atomic regions from SNP 185724 to 186324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,897 DEBUG Processing 123/672 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,027 DEBUG Processing 579/738 atomic regions from SNP 173693 to 174293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,050 DEBUG Processing 656/752 atomic regions from SNP 196557 to 197157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,070 DEBUG Processing 621/708 atomic regions from SNP 186024 to 186624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,084 DEBUG Processing 124/672 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,230 DEBUG Processing 580/738 atomic regions from SNP 173993 to 174593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,254 DEBUG Processing 657/752 atomic regions from SNP 196857 to 197457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,271 DEBUG Processing 125/672 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,275 DEBUG Processing 622/708 atomic regions from SNP 186324 to 186924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,432 DEBUG Processing 581/738 atomic regions from SNP 174293 to 174893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,457 DEBUG Processing 658/752 atomic regions from SNP 197157 to 197757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,459 DEBUG Processing 126/672 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,479 DEBUG Processing 623/708 atomic regions from SNP 186624 to 187224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,635 DEBUG Processing 582/738 atomic regions from SNP 174593 to 175193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,649 DEBUG Processing 127/672 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,660 DEBUG Processing 659/752 atomic regions from SNP 197457 to 198057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,689 DEBUG Processing 624/708 atomic regions from SNP 186924 to 187524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,838 DEBUG Processing 128/672 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,840 DEBUG Processing 583/738 atomic regions from SNP 174893 to 175493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,867 DEBUG Processing 660/752 atomic regions from SNP 197757 to 198357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,897 DEBUG Processing 625/708 atomic regions from SNP 187224 to 187824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,029 DEBUG Processing 129/672 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,045 DEBUG Processing 584/738 atomic regions from SNP 175193 to 175793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,071 DEBUG Processing 661/752 atomic regions from SNP 198057 to 198657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,107 DEBUG Processing 626/708 atomic regions from SNP 187524 to 188124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,217 DEBUG Processing 130/672 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,247 DEBUG Processing 585/738 atomic regions from SNP 175493 to 176093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,281 DEBUG Processing 662/752 atomic regions from SNP 198357 to 198957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,319 DEBUG Processing 627/708 atomic regions from SNP 187824 to 188424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,403 DEBUG Processing 131/672 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,450 DEBUG Processing 586/738 atomic regions from SNP 175793 to 176393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,488 DEBUG Processing 663/752 atomic regions from SNP 198657 to 199257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,531 DEBUG Processing 628/708 atomic regions from SNP 188124 to 188724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,603 DEBUG Processing 132/672 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,654 DEBUG Processing 587/738 atomic regions from SNP 176093 to 176693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,689 DEBUG Processing 664/752 atomic regions from SNP 198957 to 199557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,743 DEBUG Processing 629/708 atomic regions from SNP 188424 to 189024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,812 DEBUG Processing 133/672 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,877 DEBUG Processing 588/738 atomic regions from SNP 176393 to 176993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,891 DEBUG Processing 665/752 atomic regions from SNP 199257 to 199857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,952 DEBUG Processing 630/708 atomic regions from SNP 188724 to 189324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,004 DEBUG Processing 134/672 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,093 DEBUG Processing 589/738 atomic regions from SNP 176693 to 177293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,096 DEBUG Processing 666/752 atomic regions from SNP 199557 to 200157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,176 DEBUG Processing 631/708 atomic regions from SNP 189024 to 189624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,189 DEBUG Processing 135/672 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,295 DEBUG Processing 590/738 atomic regions from SNP 176993 to 177593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,299 DEBUG Processing 667/752 atomic regions from SNP 199857 to 200457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,396 DEBUG Processing 136/672 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,411 DEBUG Processing 632/708 atomic regions from SNP 189324 to 189924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,497 DEBUG Processing 591/738 atomic regions from SNP 177293 to 177893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,501 DEBUG Processing 668/752 atomic regions from SNP 200157 to 200757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,617 DEBUG Processing 137/672 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,636 DEBUG Processing 633/708 atomic regions from SNP 189624 to 190224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,703 DEBUG Processing 669/752 atomic regions from SNP 200457 to 201057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,727 DEBUG Processing 592/738 atomic regions from SNP 177593 to 178193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,821 DEBUG Processing 138/672 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,860 DEBUG Processing 634/708 atomic regions from SNP 189924 to 190524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,904 DEBUG Processing 670/752 atomic regions from SNP 200757 to 201357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,959 DEBUG Processing 593/738 atomic regions from SNP 177893 to 178493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,035 DEBUG Processing 139/672 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,093 DEBUG Processing 635/708 atomic regions from SNP 190224 to 190824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,107 DEBUG Processing 671/752 atomic regions from SNP 201057 to 201657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,196 DEBUG Processing 594/738 atomic regions from SNP 178193 to 178793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,258 DEBUG Processing 140/672 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,301 DEBUG Processing 636/708 atomic regions from SNP 190524 to 191124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,309 DEBUG Processing 672/752 atomic regions from SNP 201357 to 201957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,427 DEBUG Processing 595/738 atomic regions from SNP 178493 to 179093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,481 DEBUG Processing 141/672 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,519 DEBUG Processing 637/708 atomic regions from SNP 190824 to 191424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,540 DEBUG Processing 673/752 atomic regions from SNP 201657 to 202257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,657 DEBUG Processing 596/738 atomic regions from SNP 178793 to 179393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,695 DEBUG Processing 142/672 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,748 DEBUG Processing 638/708 atomic regions from SNP 191124 to 191724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,758 DEBUG Processing 674/752 atomic regions from SNP 201957 to 202557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,885 DEBUG Processing 597/738 atomic regions from SNP 179093 to 179693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,899 DEBUG Processing 143/672 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,966 DEBUG Processing 639/708 atomic regions from SNP 191424 to 192024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,972 DEBUG Processing 675/752 atomic regions from SNP 202257 to 202857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,091 DEBUG Processing 144/672 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,113 DEBUG Processing 598/738 atomic regions from SNP 179393 to 179993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,178 DEBUG Processing 676/752 atomic regions from SNP 202557 to 203157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,182 DEBUG Processing 640/708 atomic regions from SNP 191724 to 192324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,298 DEBUG Processing 145/672 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,320 DEBUG Processing 599/738 atomic regions from SNP 179693 to 180293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,397 DEBUG Processing 641/708 atomic regions from SNP 192024 to 192624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,404 DEBUG Processing 677/752 atomic regions from SNP 202857 to 203457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,515 DEBUG Processing 146/672 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,520 DEBUG Processing 600/738 atomic regions from SNP 179993 to 180593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,605 DEBUG Processing 642/708 atomic regions from SNP 192324 to 192924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,617 DEBUG Processing 678/752 atomic regions from SNP 203157 to 203757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,719 DEBUG Processing 601/738 atomic regions from SNP 180293 to 180893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,724 DEBUG Processing 147/672 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,818 DEBUG Processing 643/708 atomic regions from SNP 192624 to 193224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,822 DEBUG Processing 679/752 atomic regions from SNP 203457 to 204057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,912 DEBUG Processing 148/672 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,929 DEBUG Processing 602/738 atomic regions from SNP 180593 to 181193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,023 DEBUG Processing 680/752 atomic regions from SNP 203757 to 204357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,029 DEBUG Processing 644/708 atomic regions from SNP 192924 to 193524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,099 DEBUG Processing 149/672 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,154 DEBUG Processing 603/738 atomic regions from SNP 180893 to 181493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,229 DEBUG Processing 681/752 atomic regions from SNP 204057 to 204657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,241 DEBUG Processing 645/708 atomic regions from SNP 193224 to 193824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,285 DEBUG Processing 150/672 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,377 DEBUG Processing 604/738 atomic regions from SNP 181193 to 181793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,433 DEBUG Processing 682/752 atomic regions from SNP 204357 to 204957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,453 DEBUG Processing 646/708 atomic regions from SNP 193524 to 194124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,471 DEBUG Processing 151/672 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,601 DEBUG Processing 605/738 atomic regions from SNP 181493 to 182093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,639 DEBUG Processing 683/752 atomic regions from SNP 204657 to 205257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,658 DEBUG Processing 152/672 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,667 DEBUG Processing 647/708 atomic regions from SNP 193824 to 194424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,821 DEBUG Processing 606/738 atomic regions from SNP 181793 to 182393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,846 DEBUG Processing 684/752 atomic regions from SNP 204957 to 205557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,847 DEBUG Processing 153/672 atomic regions from SNP 45752 to 46353 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,878 DEBUG Processing 648/708 atomic regions from SNP 194124 to 194724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,022 DEBUG Processing 607/738 atomic regions from SNP 182093 to 182693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,039 DEBUG Processing 154/672 atomic regions from SNP 46053 to 46654 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,068 DEBUG Processing 685/752 atomic regions from SNP 205257 to 205857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,089 DEBUG Processing 649/708 atomic regions from SNP 194424 to 195024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,222 DEBUG Processing 608/738 atomic regions from SNP 182393 to 182993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,229 DEBUG Processing 155/672 atomic regions from SNP 46354 to 46955 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,282 DEBUG Processing 686/752 atomic regions from SNP 205557 to 206157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,321 DEBUG Processing 650/708 atomic regions from SNP 194724 to 195324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,421 DEBUG Processing 156/672 atomic regions from SNP 46655 to 47256 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,430 DEBUG Processing 609/738 atomic regions from SNP 182693 to 183293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,486 DEBUG Processing 687/752 atomic regions from SNP 205857 to 206457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,557 DEBUG Processing 651/708 atomic regions from SNP 195024 to 195624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,609 DEBUG Processing 157/672 atomic regions from SNP 46956 to 47557 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,630 DEBUG Processing 610/738 atomic regions from SNP 182993 to 183593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,685 DEBUG Processing 688/752 atomic regions from SNP 206157 to 206757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,771 DEBUG Processing 652/708 atomic regions from SNP 195324 to 195924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,800 DEBUG Processing 158/672 atomic regions from SNP 47257 to 47858 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,831 DEBUG Processing 611/738 atomic regions from SNP 183293 to 183893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,886 DEBUG Processing 689/752 atomic regions from SNP 206457 to 207057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,986 DEBUG Processing 653/708 atomic regions from SNP 195624 to 196224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,000 DEBUG Processing 159/672 atomic regions from SNP 47558 to 48159 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,033 DEBUG Processing 612/738 atomic regions from SNP 183593 to 184193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,086 DEBUG Processing 690/752 atomic regions from SNP 206757 to 207357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,197 DEBUG Processing 160/672 atomic regions from SNP 47859 to 48460 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,198 DEBUG Processing 654/708 atomic regions from SNP 195924 to 196524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,234 DEBUG Processing 613/738 atomic regions from SNP 183893 to 184493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,289 DEBUG Processing 691/752 atomic regions from SNP 207057 to 207657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,400 DEBUG Processing 161/672 atomic regions from SNP 48160 to 48761 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,410 DEBUG Processing 655/708 atomic regions from SNP 196224 to 196824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,435 DEBUG Processing 614/738 atomic regions from SNP 184193 to 184793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,492 DEBUG Processing 692/752 atomic regions from SNP 207357 to 207957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,618 DEBUG Processing 162/672 atomic regions from SNP 48461 to 49062 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,622 DEBUG Processing 656/708 atomic regions from SNP 196524 to 197124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,636 DEBUG Processing 615/738 atomic regions from SNP 184493 to 185093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,695 DEBUG Processing 693/752 atomic regions from SNP 207657 to 208257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,828 DEBUG Processing 163/672 atomic regions from SNP 48762 to 49363 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,836 DEBUG Processing 657/708 atomic regions from SNP 196824 to 197424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,836 DEBUG Processing 616/738 atomic regions from SNP 184793 to 185393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,896 DEBUG Processing 694/752 atomic regions from SNP 207957 to 208557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,019 DEBUG Processing 164/672 atomic regions from SNP 49063 to 49664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,040 DEBUG Processing 617/738 atomic regions from SNP 185093 to 185693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,050 DEBUG Processing 658/708 atomic regions from SNP 197124 to 197724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,104 DEBUG Processing 695/752 atomic regions from SNP 208257 to 208857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,204 DEBUG Processing 165/672 atomic regions from SNP 49364 to 49965 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,241 DEBUG Processing 618/738 atomic regions from SNP 185393 to 185993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,265 DEBUG Processing 659/708 atomic regions from SNP 197424 to 198024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,307 DEBUG Processing 696/752 atomic regions from SNP 208557 to 209157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,389 DEBUG Processing 166/672 atomic regions from SNP 49665 to 50266 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,449 DEBUG Processing 619/738 atomic regions from SNP 185693 to 186293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,475 DEBUG Processing 660/708 atomic regions from SNP 197724 to 198324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,511 DEBUG Processing 697/752 atomic regions from SNP 208857 to 209457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,574 DEBUG Processing 167/672 atomic regions from SNP 49966 to 50567 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,672 DEBUG Processing 620/738 atomic regions from SNP 185993 to 186593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,684 DEBUG Processing 661/708 atomic regions from SNP 198024 to 198624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,715 DEBUG Processing 698/752 atomic regions from SNP 209157 to 209757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,760 DEBUG Processing 168/672 atomic regions from SNP 50267 to 50868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,871 DEBUG Processing 621/738 atomic regions from SNP 186293 to 186893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,895 DEBUG Processing 662/708 atomic regions from SNP 198324 to 198924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,920 DEBUG Processing 699/752 atomic regions from SNP 209457 to 210057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,947 DEBUG Processing 169/672 atomic regions from SNP 50568 to 51169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,070 DEBUG Processing 622/738 atomic regions from SNP 186593 to 187193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,103 DEBUG Processing 663/708 atomic regions from SNP 198624 to 199224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,127 DEBUG Processing 700/752 atomic regions from SNP 209757 to 210357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,133 DEBUG Processing 170/672 atomic regions from SNP 50869 to 51470 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,270 DEBUG Processing 623/738 atomic regions from SNP 186893 to 187493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,311 DEBUG Processing 664/708 atomic regions from SNP 198924 to 199524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,321 DEBUG Processing 171/672 atomic regions from SNP 51170 to 51771 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,334 DEBUG Processing 701/752 atomic regions from SNP 210057 to 210657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,469 DEBUG Processing 624/738 atomic regions from SNP 187193 to 187793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,507 DEBUG Processing 172/672 atomic regions from SNP 51471 to 52072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,520 DEBUG Processing 665/708 atomic regions from SNP 199224 to 199824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,538 DEBUG Processing 702/752 atomic regions from SNP 210357 to 210957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,672 DEBUG Processing 625/738 atomic regions from SNP 187493 to 188093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,701 DEBUG Processing 173/672 atomic regions from SNP 51772 to 52373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,738 DEBUG Processing 666/708 atomic regions from SNP 199524 to 200124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,743 DEBUG Processing 703/752 atomic regions from SNP 210657 to 211257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,893 DEBUG Processing 626/738 atomic regions from SNP 187793 to 188393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,898 DEBUG Processing 174/672 atomic regions from SNP 52073 to 52674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,944 DEBUG Processing 704/752 atomic regions from SNP 210957 to 211557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,944 DEBUG Processing 667/708 atomic regions from SNP 199824 to 200424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,095 DEBUG Processing 175/672 atomic regions from SNP 52374 to 52975 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,117 DEBUG Processing 627/738 atomic regions from SNP 188093 to 188693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,147 DEBUG Processing 705/752 atomic regions from SNP 211257 to 211857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,153 DEBUG Processing 668/708 atomic regions from SNP 200124 to 200724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,300 DEBUG Processing 176/672 atomic regions from SNP 52675 to 53276 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,351 DEBUG Processing 628/738 atomic regions from SNP 188393 to 188993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,351 DEBUG Processing 706/752 atomic regions from SNP 211557 to 212157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,363 DEBUG Processing 669/708 atomic regions from SNP 200424 to 201024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,493 DEBUG Processing 177/672 atomic regions from SNP 52976 to 53577 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,561 DEBUG Processing 707/752 atomic regions from SNP 211857 to 212457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,571 DEBUG Processing 629/738 atomic regions from SNP 188693 to 189293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,578 DEBUG Processing 670/708 atomic regions from SNP 200724 to 201324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,679 DEBUG Processing 178/672 atomic regions from SNP 53277 to 53878 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,788 DEBUG Processing 708/752 atomic regions from SNP 212157 to 212757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,792 DEBUG Processing 671/708 atomic regions from SNP 201024 to 201624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,799 DEBUG Processing 630/738 atomic regions from SNP 188993 to 189593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,862 DEBUG Processing 179/672 atomic regions from SNP 53578 to 54179 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,000 DEBUG Processing 672/708 atomic regions from SNP 201324 to 201924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,013 DEBUG Processing 709/752 atomic regions from SNP 212457 to 213057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,023 DEBUG Processing 631/738 atomic regions from SNP 189293 to 189893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,049 DEBUG Processing 180/672 atomic regions from SNP 53879 to 54480 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,206 DEBUG Processing 673/708 atomic regions from SNP 201624 to 202224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,237 DEBUG Processing 181/672 atomic regions from SNP 54180 to 54781 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,239 DEBUG Processing 710/752 atomic regions from SNP 212757 to 213357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,248 DEBUG Processing 632/738 atomic regions from SNP 189593 to 190193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,414 DEBUG Processing 674/708 atomic regions from SNP 201924 to 202524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,425 DEBUG Processing 182/672 atomic regions from SNP 54481 to 55082 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,444 DEBUG Processing 711/752 atomic regions from SNP 213057 to 213657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,474 DEBUG Processing 633/738 atomic regions from SNP 189893 to 190493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,614 DEBUG Processing 183/672 atomic regions from SNP 54782 to 55383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,618 DEBUG Processing 675/708 atomic regions from SNP 202224 to 202824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,647 DEBUG Processing 712/752 atomic regions from SNP 213357 to 213957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,704 DEBUG Processing 634/738 atomic regions from SNP 190193 to 190793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,801 DEBUG Processing 184/672 atomic regions from SNP 55083 to 55684 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,825 DEBUG Processing 676/708 atomic regions from SNP 202524 to 203124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,849 DEBUG Processing 713/752 atomic regions from SNP 213657 to 214257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,906 DEBUG Processing 635/738 atomic regions from SNP 190493 to 191093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,988 DEBUG Processing 185/672 atomic regions from SNP 55384 to 55985 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,044 DEBUG Processing 677/708 atomic regions from SNP 202824 to 203424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,052 DEBUG Processing 714/752 atomic regions from SNP 213957 to 214557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,105 DEBUG Processing 636/738 atomic regions from SNP 190793 to 191393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,175 DEBUG Processing 186/672 atomic regions from SNP 55685 to 56286 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,255 DEBUG Processing 715/752 atomic regions from SNP 214257 to 214857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,283 DEBUG Processing 678/708 atomic regions from SNP 203124 to 203724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,306 DEBUG Processing 637/738 atomic regions from SNP 191093 to 191693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,362 DEBUG Processing 187/672 atomic regions from SNP 55986 to 56587 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,458 DEBUG Processing 716/752 atomic regions from SNP 214557 to 215157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,497 DEBUG Processing 679/708 atomic regions from SNP 203424 to 204024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,509 DEBUG Processing 638/738 atomic regions from SNP 191393 to 191993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,550 DEBUG Processing 188/672 atomic regions from SNP 56287 to 56888 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,665 DEBUG Processing 717/752 atomic regions from SNP 214857 to 215457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,711 DEBUG Processing 680/708 atomic regions from SNP 203724 to 204324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,714 DEBUG Processing 639/738 atomic regions from SNP 191693 to 192293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,739 DEBUG Processing 189/672 atomic regions from SNP 56588 to 57189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,866 DEBUG Processing 718/752 atomic regions from SNP 215157 to 215757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,916 DEBUG Processing 640/738 atomic regions from SNP 191993 to 192593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,928 DEBUG Processing 190/672 atomic regions from SNP 56889 to 57490 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,930 DEBUG Processing 681/708 atomic regions from SNP 204024 to 204624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,067 DEBUG Processing 719/752 atomic regions from SNP 215457 to 216057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,115 DEBUG Processing 191/672 atomic regions from SNP 57190 to 57791 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,116 DEBUG Processing 641/738 atomic regions from SNP 192293 to 192893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,166 DEBUG Processing 682/708 atomic regions from SNP 204324 to 204924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,267 DEBUG Processing 720/752 atomic regions from SNP 215757 to 216357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,302 DEBUG Processing 192/672 atomic regions from SNP 57491 to 58092 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,317 DEBUG Processing 642/738 atomic regions from SNP 192593 to 193193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,406 DEBUG Processing 683/708 atomic regions from SNP 204624 to 205224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,468 DEBUG Processing 721/752 atomic regions from SNP 216057 to 216657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,491 DEBUG Processing 193/672 atomic regions from SNP 57792 to 58393 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,518 DEBUG Processing 643/738 atomic regions from SNP 192893 to 193493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,657 DEBUG Processing 684/708 atomic regions from SNP 204924 to 205524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,672 DEBUG Processing 722/752 atomic regions from SNP 216357 to 216957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,680 DEBUG Processing 194/672 atomic regions from SNP 58093 to 58694 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,720 DEBUG Processing 644/738 atomic regions from SNP 193193 to 193793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,866 DEBUG Processing 195/672 atomic regions from SNP 58394 to 58995 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,876 DEBUG Processing 723/752 atomic regions from SNP 216657 to 217257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,910 DEBUG Processing 685/708 atomic regions from SNP 205224 to 205824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,923 DEBUG Processing 645/738 atomic regions from SNP 193493 to 194093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,056 DEBUG Processing 196/672 atomic regions from SNP 58695 to 59296 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,081 DEBUG Processing 724/752 atomic regions from SNP 216957 to 217557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,124 DEBUG Processing 646/738 atomic regions from SNP 193793 to 194393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,154 DEBUG Processing 686/708 atomic regions from SNP 205524 to 206124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,244 DEBUG Processing 197/672 atomic regions from SNP 58996 to 59597 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,284 DEBUG Processing 725/752 atomic regions from SNP 217257 to 217857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,327 DEBUG Processing 647/738 atomic regions from SNP 194093 to 194693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,395 DEBUG Processing 687/708 atomic regions from SNP 205824 to 206424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,432 DEBUG Processing 198/672 atomic regions from SNP 59297 to 59898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,487 DEBUG Processing 726/752 atomic regions from SNP 217557 to 218157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,530 DEBUG Processing 648/738 atomic regions from SNP 194393 to 194993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,631 DEBUG Processing 688/708 atomic regions from SNP 206124 to 206724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,638 DEBUG Processing 199/672 atomic regions from SNP 59598 to 60199 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,690 DEBUG Processing 727/752 atomic regions from SNP 217857 to 218457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,729 DEBUG Processing 649/738 atomic regions from SNP 194693 to 195293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,843 DEBUG Processing 200/672 atomic regions from SNP 59899 to 60500 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,868 DEBUG Processing 689/708 atomic regions from SNP 206424 to 207024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,892 DEBUG Processing 728/752 atomic regions from SNP 218157 to 218757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,932 DEBUG Processing 650/738 atomic regions from SNP 194993 to 195593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,032 DEBUG Processing 201/672 atomic regions from SNP 60200 to 60801 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,095 DEBUG Processing 729/752 atomic regions from SNP 218457 to 219057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,102 DEBUG Processing 690/708 atomic regions from SNP 206724 to 207324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,132 DEBUG Processing 651/738 atomic regions from SNP 195293 to 195893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,219 DEBUG Processing 202/672 atomic regions from SNP 60501 to 61102 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,298 DEBUG Processing 730/752 atomic regions from SNP 218757 to 219357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,332 DEBUG Processing 652/738 atomic regions from SNP 195593 to 196193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,340 DEBUG Processing 691/708 atomic regions from SNP 207024 to 207624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,405 DEBUG Processing 203/672 atomic regions from SNP 60802 to 61403 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,500 DEBUG Processing 731/752 atomic regions from SNP 219057 to 219657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,532 DEBUG Processing 653/738 atomic regions from SNP 195893 to 196493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,582 DEBUG Processing 692/708 atomic regions from SNP 207324 to 207924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,593 DEBUG Processing 204/672 atomic regions from SNP 61103 to 61704 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,711 DEBUG Processing 732/752 atomic regions from SNP 219357 to 219957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,734 DEBUG Processing 654/738 atomic regions from SNP 196193 to 196793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,783 DEBUG Processing 205/672 atomic regions from SNP 61404 to 62005 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,811 DEBUG Processing 693/708 atomic regions from SNP 207624 to 208224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,936 DEBUG Processing 655/738 atomic regions from SNP 196493 to 197093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,946 DEBUG Processing 733/752 atomic regions from SNP 219657 to 220257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,970 DEBUG Processing 206/672 atomic regions from SNP 61705 to 62306 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,022 DEBUG Processing 694/708 atomic regions from SNP 207924 to 208524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,113 DEBUG Segmenting atomic regions: 2025-01-31 09:51:10,138 DEBUG Processing 656/738 atomic regions from SNP 196793 to 197393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,160 DEBUG Processing 207/672 atomic regions from SNP 62006 to 62607 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,185 DEBUG Processing 734/752 atomic regions from SNP 219957 to 220557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,206 DEBUG Processing 1/727 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,241 DEBUG Processing 695/708 atomic regions from SNP 208224 to 208824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,343 DEBUG Processing 657/738 atomic regions from SNP 197093 to 197693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,370 DEBUG Processing 208/672 atomic regions from SNP 62307 to 62908 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,399 DEBUG Processing 2/727 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,420 DEBUG Processing 735/752 atomic regions from SNP 220257 to 220857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,453 DEBUG Processing 696/708 atomic regions from SNP 208524 to 209124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,547 DEBUG Processing 658/738 atomic regions from SNP 197393 to 197993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,585 DEBUG Processing 209/672 atomic regions from SNP 62608 to 63209 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,595 DEBUG Processing 3/727 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,648 DEBUG Processing 736/752 atomic regions from SNP 220557 to 221157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,661 DEBUG Processing 697/708 atomic regions from SNP 208824 to 209424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,748 DEBUG Processing 659/738 atomic regions from SNP 197693 to 198293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,787 DEBUG Processing 210/672 atomic regions from SNP 62909 to 63510 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,791 DEBUG Processing 4/727 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,877 DEBUG Processing 737/752 atomic regions from SNP 220857 to 221457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,882 DEBUG Processing 698/708 atomic regions from SNP 209124 to 209724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,952 DEBUG Processing 660/738 atomic regions from SNP 197993 to 198593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,988 DEBUG Processing 5/727 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,001 DEBUG Processing 211/672 atomic regions from SNP 63210 to 63811 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,091 DEBUG Processing 738/752 atomic regions from SNP 221157 to 221757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,109 DEBUG Processing 699/708 atomic regions from SNP 209424 to 210024 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,156 DEBUG Processing 661/738 atomic regions from SNP 198293 to 198893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,182 DEBUG Processing 6/727 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,191 DEBUG Processing 212/672 atomic regions from SNP 63511 to 64112 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,312 DEBUG Processing 739/752 atomic regions from SNP 221457 to 222057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,338 DEBUG Processing 700/708 atomic regions from SNP 209724 to 210324 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,362 DEBUG Processing 662/738 atomic regions from SNP 198593 to 199193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,375 DEBUG Processing 7/727 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,381 DEBUG Processing 213/672 atomic regions from SNP 63812 to 64413 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,547 DEBUG Processing 740/752 atomic regions from SNP 221757 to 222357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,570 DEBUG Processing 701/708 atomic regions from SNP 210024 to 210624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,570 DEBUG Processing 8/727 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,574 DEBUG Processing 214/672 atomic regions from SNP 64113 to 64714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,590 DEBUG Processing 663/738 atomic regions from SNP 198893 to 199493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,765 DEBUG Processing 9/727 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,767 DEBUG Processing 215/672 atomic regions from SNP 64414 to 65015 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,783 DEBUG Processing 741/752 atomic regions from SNP 222057 to 222657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,783 DEBUG Processing 702/708 atomic regions from SNP 210324 to 210924 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,827 DEBUG Processing 664/738 atomic regions from SNP 199193 to 199793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,957 DEBUG Processing 216/672 atomic regions from SNP 64715 to 65316 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,962 DEBUG Processing 10/727 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,000 DEBUG Processing 703/708 atomic regions from SNP 210624 to 211224 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,029 DEBUG Processing 742/752 atomic regions from SNP 222357 to 222957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,061 DEBUG Processing 665/738 atomic regions from SNP 199493 to 200093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,152 DEBUG Processing 217/672 atomic regions from SNP 65016 to 65617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,157 DEBUG Processing 11/727 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,221 DEBUG Processing 704/708 atomic regions from SNP 210924 to 211524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,266 DEBUG Processing 743/752 atomic regions from SNP 222657 to 223257 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,289 DEBUG Processing 666/738 atomic regions from SNP 199793 to 200393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,350 DEBUG Processing 12/727 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,357 DEBUG Processing 218/672 atomic regions from SNP 65317 to 65918 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,446 DEBUG Processing 705/708 atomic regions from SNP 211224 to 211824 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,502 DEBUG Processing 744/752 atomic regions from SNP 222957 to 223557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,508 DEBUG Processing 667/738 atomic regions from SNP 200093 to 200693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,545 DEBUG Processing 13/727 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,553 DEBUG Processing 219/672 atomic regions from SNP 65618 to 66219 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,657 DEBUG Processing 706/708 atomic regions from SNP 211524 to 212124 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,716 DEBUG Processing 668/738 atomic regions from SNP 200393 to 200993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,735 DEBUG Processing 745/752 atomic regions from SNP 223257 to 223857 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,740 DEBUG Processing 14/727 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,761 DEBUG Processing 220/672 atomic regions from SNP 65919 to 66520 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,874 DEBUG Processing 707/708 atomic regions from SNP 211824 to 212424 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,922 DEBUG Processing 669/738 atomic regions from SNP 200693 to 201293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,935 DEBUG Processing 15/727 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,940 DEBUG Processing 746/752 atomic regions from SNP 223557 to 224157 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,971 DEBUG Processing 221/672 atomic regions from SNP 66220 to 66821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,085 DEBUG Processing 708/708 atomic regions from SNP 212124 to 212724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,124 DEBUG Processing 670/738 atomic regions from SNP 200993 to 201593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,129 DEBUG Processing 16/727 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,144 DEBUG Processing 747/752 atomic regions from SNP 223857 to 224457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,184 DEBUG Processing 222/672 atomic regions from SNP 66521 to 67122 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,199 DEBUG Unique SNPs positions in subchromosome 3: 212725 2025-01-31 09:51:13,321 DEBUG Processing 17/727 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,326 DEBUG Processing 671/738 atomic regions from SNP 201293 to 201893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,349 DEBUG Processing 748/752 atomic regions from SNP 224157 to 224757 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,385 DEBUG Processing 223/672 atomic regions from SNP 66822 to 67423 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,513 DEBUG Processing 18/727 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,530 DEBUG Processing 672/738 atomic regions from SNP 201593 to 202193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,551 DEBUG Processing 749/752 atomic regions from SNP 224457 to 225057 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,574 DEBUG Processing 224/672 atomic regions from SNP 67123 to 67724 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,707 DEBUG Processing 19/727 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,731 DEBUG Processing 673/738 atomic regions from SNP 201893 to 202493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,752 DEBUG Processing 750/752 atomic regions from SNP 224757 to 225357 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,761 DEBUG Processing 225/672 atomic regions from SNP 67424 to 68025 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,903 DEBUG Processing 20/727 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,934 DEBUG Processing 674/738 atomic regions from SNP 202193 to 202793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,948 DEBUG Processing 226/672 atomic regions from SNP 67725 to 68326 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,954 DEBUG Processing 751/752 atomic regions from SNP 225057 to 225657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,097 DEBUG Processing 21/727 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,135 DEBUG Processing 227/672 atomic regions from SNP 68026 to 68627 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,139 DEBUG Processing 675/738 atomic regions from SNP 202493 to 203093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,155 DEBUG Processing 752/752 atomic regions from SNP 225357 to 225957 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,269 DEBUG Unique SNPs positions in subchromosome 1: 225958 2025-01-31 09:51:14,290 DEBUG Processing 22/727 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,337 DEBUG Processing 228/672 atomic regions from SNP 68327 to 68928 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,342 DEBUG Processing 676/738 atomic regions from SNP 202793 to 203393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,482 DEBUG Processing 23/727 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,525 DEBUG Processing 229/672 atomic regions from SNP 68628 to 69229 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,543 DEBUG Processing 677/738 atomic regions from SNP 203093 to 203693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,674 DEBUG Processing 24/727 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,712 DEBUG Processing 230/672 atomic regions from SNP 68929 to 69530 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,766 DEBUG Processing 678/738 atomic regions from SNP 203393 to 203993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,867 DEBUG Processing 25/727 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,899 DEBUG Processing 231/672 atomic regions from SNP 69230 to 69831 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,002 DEBUG Processing 679/738 atomic regions from SNP 203693 to 204293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,063 DEBUG Processing 26/727 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,086 DEBUG Processing 232/672 atomic regions from SNP 69531 to 70132 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,236 DEBUG Processing 680/738 atomic regions from SNP 203993 to 204593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,260 DEBUG Processing 27/727 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,274 DEBUG Processing 233/672 atomic regions from SNP 69832 to 70433 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,464 DEBUG Processing 234/672 atomic regions from SNP 70133 to 70734 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,465 DEBUG Processing 681/738 atomic regions from SNP 204293 to 204893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,474 DEBUG Processing 28/727 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,656 DEBUG Processing 235/672 atomic regions from SNP 70434 to 71035 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,676 DEBUG Processing 29/727 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,699 DEBUG Processing 682/738 atomic regions from SNP 204593 to 205193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,847 DEBUG Processing 236/672 atomic regions from SNP 70735 to 71336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,869 DEBUG Processing 30/727 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,931 DEBUG Processing 683/738 atomic regions from SNP 204893 to 205493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,033 DEBUG Processing 237/672 atomic regions from SNP 71036 to 71637 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,061 DEBUG Processing 31/727 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,167 DEBUG Processing 684/738 atomic regions from SNP 205193 to 205793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,221 DEBUG Processing 238/672 atomic regions from SNP 71337 to 71938 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,253 DEBUG Processing 32/727 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,403 DEBUG Processing 685/738 atomic regions from SNP 205493 to 206093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,408 DEBUG Processing 239/672 atomic regions from SNP 71638 to 72239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,446 DEBUG Processing 33/727 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,598 DEBUG Processing 240/672 atomic regions from SNP 71939 to 72540 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,636 DEBUG Processing 686/738 atomic regions from SNP 205793 to 206393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,640 DEBUG Processing 34/727 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,804 DEBUG Processing 241/672 atomic regions from SNP 72240 to 72841 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,833 DEBUG Processing 35/727 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,871 DEBUG Processing 687/738 atomic regions from SNP 206093 to 206693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,026 DEBUG Processing 242/672 atomic regions from SNP 72541 to 73142 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,026 DEBUG Processing 36/727 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,093 DEBUG Processing 688/738 atomic regions from SNP 206393 to 206993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,217 DEBUG Processing 37/727 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,247 DEBUG Processing 243/672 atomic regions from SNP 72842 to 73443 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,310 DEBUG Processing 689/738 atomic regions from SNP 206693 to 207293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,409 DEBUG Processing 38/727 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,449 DEBUG Processing 244/672 atomic regions from SNP 73143 to 73744 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,525 DEBUG Processing 690/738 atomic regions from SNP 206993 to 207593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,599 DEBUG Processing 39/727 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,636 DEBUG Processing 245/672 atomic regions from SNP 73444 to 74045 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,736 DEBUG Processing 691/738 atomic regions from SNP 207293 to 207893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,793 DEBUG Processing 40/727 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,823 DEBUG Processing 246/672 atomic regions from SNP 73745 to 74346 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,954 DEBUG Processing 692/738 atomic regions from SNP 207593 to 208193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,986 DEBUG Processing 41/727 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,026 DEBUG Processing 247/672 atomic regions from SNP 74046 to 74647 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,177 DEBUG Processing 42/727 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,180 DEBUG Processing 693/738 atomic regions from SNP 207893 to 208493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,248 DEBUG Processing 248/672 atomic regions from SNP 74347 to 74948 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,371 DEBUG Processing 43/727 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,415 DEBUG Processing 694/738 atomic regions from SNP 208193 to 208793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,453 DEBUG Subchromosome time: 187.96710369177163, subchromosome SNPs: 225958 2025-01-31 09:51:18,454 DEBUG Estimated BADs: [1.38, 0.69, 1.38, 2.77, 1.38, 0.35, 0.69, 2.77, 0.35, 1.38, 2.77, 1.38, 12.46, 1.38, 0.46, 0.69, 1.38, 0.69, 5.54, 0.69] SNP counts: [52651, 8405, 4033, 6477, 7181, 3909, 13563, 11035, 2699, 17403, 5401, 2102, 3839, 34253, 10198, 12600, 18912, 4787, 4537, 1973] SNP IDs counts: [52651, 8405, 4033, 6477, 7181, 3909, 13563, 11035, 2699, 17403, 5401, 2102, 3839, 34253, 10198, 12600, 18912, 4787, 4537, 1973] Critical gap: 616077bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 33.03Mbp, 37.83Mbp, 40.11Mbp, 43.57Mbp, 47.62Mbp, 49.94Mbp, 58.21Mbp, 64.13Mbp, 65.81Mbp, 75.49Mbp, 78.36Mbp, 79.65Mbp, 81.65Mbp, 100.86Mbp, 106.84Mbp, 113.83Mbp, 124.22Mbp, 126.90Mbp, 129.38Mbp, 130.69Mbp] 2025-01-31 09:51:18,454 DEBUG chr10 time: 187.96775723434985 s 2025-01-31 09:51:18,472 DEBUG Processing 249/672 atomic regions from SNP 74648 to 75249 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,574 DEBUG Processing 44/727 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,582 DEBUG chr10: Fitting background model for 20 segments 2025-01-31 09:51:18,651 DEBUG Processing 695/738 atomic regions from SNP 208493 to 209093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,687 DEBUG Processing 250/672 atomic regions from SNP 74949 to 75550 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,765 DEBUG Processing 45/727 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,877 DEBUG Processing 251/672 atomic regions from SNP 75250 to 75851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,886 DEBUG Processing 696/738 atomic regions from SNP 208793 to 209393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,958 DEBUG Processing 46/727 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,067 DEBUG Processing 252/672 atomic regions from SNP 75551 to 76151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,120 DEBUG Processing 697/738 atomic regions from SNP 209093 to 209693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,154 DEBUG Processing 47/727 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,255 DEBUG Processing 253/672 atomic regions from SNP 75851 to 76451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,348 DEBUG Processing 48/727 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,363 DEBUG Processing 698/738 atomic regions from SNP 209393 to 209993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,440 DEBUG Processing 254/672 atomic regions from SNP 76151 to 76751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,551 DEBUG Processing 49/727 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,612 DEBUG Processing 699/738 atomic regions from SNP 209693 to 210293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,626 DEBUG Processing 255/672 atomic regions from SNP 76451 to 77051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,747 DEBUG Processing 50/727 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,819 DEBUG Processing 256/672 atomic regions from SNP 76751 to 77351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,854 DEBUG Processing 700/738 atomic regions from SNP 209993 to 210593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,942 DEBUG Processing 51/727 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,029 DEBUG Processing 257/672 atomic regions from SNP 77051 to 77651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,089 DEBUG Processing 701/738 atomic regions from SNP 210293 to 210893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,138 DEBUG Processing 52/727 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,246 DEBUG Processing 258/672 atomic regions from SNP 77351 to 77951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,327 DEBUG Processing 702/738 atomic regions from SNP 210593 to 211193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,334 DEBUG Processing 53/727 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,470 DEBUG Processing 259/672 atomic regions from SNP 77651 to 78251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,532 DEBUG Processing 54/727 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,566 DEBUG Processing 703/738 atomic regions from SNP 210893 to 211493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,691 DEBUG Processing 260/672 atomic regions from SNP 77951 to 78551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,732 DEBUG Processing 55/727 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,807 DEBUG Processing 704/738 atomic regions from SNP 211193 to 211793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,903 DEBUG Processing 261/672 atomic regions from SNP 78251 to 78851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,928 DEBUG Processing 56/727 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,043 DEBUG Processing 705/738 atomic regions from SNP 211493 to 212093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,123 DEBUG Processing 57/727 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,126 DEBUG Processing 262/672 atomic regions from SNP 78551 to 79151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,271 DEBUG Processing 706/738 atomic regions from SNP 211793 to 212393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,318 DEBUG Processing 58/727 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,339 DEBUG Processing 263/672 atomic regions from SNP 78851 to 79451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,506 DEBUG Processing 707/738 atomic regions from SNP 212093 to 212693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,513 DEBUG Processing 59/727 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,539 DEBUG Processing 264/672 atomic regions from SNP 79151 to 79751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,708 DEBUG Processing 60/727 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,731 DEBUG Processing 708/738 atomic regions from SNP 212393 to 212993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,760 DEBUG Processing 265/672 atomic regions from SNP 79451 to 80051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,900 DEBUG Processing 61/727 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,956 DEBUG Processing 709/738 atomic regions from SNP 212693 to 213293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,986 DEBUG Processing 266/672 atomic regions from SNP 79751 to 80351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,093 DEBUG Processing 62/727 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,170 DEBUG Processing 710/738 atomic regions from SNP 212993 to 213593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,209 DEBUG Processing 267/672 atomic regions from SNP 80051 to 80651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,283 DEBUG Processing 63/727 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,388 DEBUG Processing 711/738 atomic regions from SNP 213293 to 213893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,403 DEBUG Processing 268/672 atomic regions from SNP 80351 to 80951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,476 DEBUG Processing 64/727 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,593 DEBUG Processing 269/672 atomic regions from SNP 80651 to 81251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,600 DEBUG Processing 712/738 atomic regions from SNP 213593 to 214193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,670 DEBUG Processing 65/727 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,783 DEBUG Processing 270/672 atomic regions from SNP 80951 to 81551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,831 DEBUG Processing 713/738 atomic regions from SNP 213893 to 214493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,861 DEBUG Processing 66/727 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,994 DEBUG Processing 271/672 atomic regions from SNP 81251 to 81851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,044 DEBUG Processing 714/738 atomic regions from SNP 214193 to 214793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,054 DEBUG Processing 67/727 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,209 DEBUG Processing 272/672 atomic regions from SNP 81551 to 82151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,251 DEBUG Processing 68/727 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,254 DEBUG Processing 715/738 atomic regions from SNP 214493 to 215093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,423 DEBUG Processing 273/672 atomic regions from SNP 81851 to 82451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,463 DEBUG Processing 716/738 atomic regions from SNP 214793 to 215393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,471 DEBUG Processing 69/727 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,618 DEBUG Processing 274/672 atomic regions from SNP 82151 to 82751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,669 DEBUG Processing 717/738 atomic regions from SNP 215093 to 215693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,676 DEBUG Processing 70/727 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,809 DEBUG Processing 275/672 atomic regions from SNP 82451 to 83051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,873 DEBUG Processing 71/727 atomic regions from SNP 21070 to 21671 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,881 DEBUG Processing 718/738 atomic regions from SNP 215393 to 215993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,000 DEBUG Processing 276/672 atomic regions from SNP 82751 to 83351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,068 DEBUG Processing 72/727 atomic regions from SNP 21371 to 21972 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,093 DEBUG Processing 719/738 atomic regions from SNP 215693 to 216293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,200 DEBUG Processing 277/672 atomic regions from SNP 83051 to 83651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,262 DEBUG Processing 73/727 atomic regions from SNP 21672 to 22273 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,299 DEBUG Processing 720/738 atomic regions from SNP 215993 to 216593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,398 DEBUG Processing 278/672 atomic regions from SNP 83351 to 83951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,457 DEBUG Processing 74/727 atomic regions from SNP 21973 to 22574 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,519 DEBUG Processing 721/738 atomic regions from SNP 216293 to 216893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,610 DEBUG Processing 279/672 atomic regions from SNP 83651 to 84251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,652 DEBUG Processing 75/727 atomic regions from SNP 22274 to 22875 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,728 DEBUG Processing 722/738 atomic regions from SNP 216593 to 217193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,821 DEBUG Processing 280/672 atomic regions from SNP 83951 to 84551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,847 DEBUG Processing 76/727 atomic regions from SNP 22575 to 23176 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,955 DEBUG Processing 723/738 atomic regions from SNP 216893 to 217493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,009 DEBUG Processing 281/672 atomic regions from SNP 84251 to 84851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,041 DEBUG Processing 77/727 atomic regions from SNP 22876 to 23477 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,189 DEBUG Processing 724/738 atomic regions from SNP 217193 to 217793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,199 DEBUG Processing 282/672 atomic regions from SNP 84551 to 85151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,235 DEBUG Processing 78/727 atomic regions from SNP 23177 to 23778 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,344 DEBUG Subchromosome time: 186.94189171120524, subchromosome SNPs: 212725 2025-01-31 09:51:25,344 DEBUG Estimated BADs: [0.79, 4.77, 0.53, 3.18, 0.53, 7.95, 0.79, 4.77, 0.79, 6.36, 0.00, 0.79, 4.77, 0.79, 4.77, 0.53, 1.59, 0.79, 7.95, 3.18, 0.53, 1.59, 0.53, 1.59, 0.79, 1.59, 0.79, 4.77, 1.59, 0.40, 1.59, 0.79, 0.32, 1.59, 3.18, 0.79, 1.59, 4.77, 1.59, 6.36, 3.18] SNP counts: [840, 2335, 828, 2590, 4055, 316, 3311, 2301, 2424, 2108, 26, 1559, 3008, 1253, 7838, 2040, 8414, 8379, 2762, 2824, 1919, 3022, 22412, 9088, 8495, 5307, 4982, 3154, 7205, 5659, 4523, 4772, 3295, 6058, 8327, 7206, 32113, 5408, 23244, 1393, 7066] SNP IDs counts: [840, 2335, 828, 2590, 4055, 316, 3311, 2301, 2424, 2108, 26, 1559, 3008, 1253, 7838, 2040, 8414, 8379, 2762, 2824, 1919, 3022, 22412, 9088, 8495, 5307, 4982, 3154, 7205, 5659, 4523, 4772, 3295, 6058, 8327, 7206, 32113, 5408, 23244, 1393, 7066] Critical gap: 666481bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.59Mbp, 5.11Mbp, 5.70Mbp, 7.30Mbp, 12.90Mbp, 13.06Mbp, 15.90Mbp, 17.11Mbp, 18.94Mbp, 20.07Mbp[0.71Mbp], 21.44Mbp[1.32Mbp], 24.30Mbp, 25.95Mbp, 26.78Mbp, 31.11Mbp, 33.79Mbp, 38.29Mbp, 44.24Mbp, 45.68Mbp, 47.17Mbp, 48.42Mbp, 50.06Mbp, 63.85Mbp, 68.77Mbp, 73.51Mbp, 76.50Mbp, 79.23Mbp, 80.88Mbp, 84.81Mbp, 88.17Mbp, 90.75Mbp, 93.44Mbp, 95.40Mbp, 98.69Mbp, 103.13Mbp, 107.96Mbp, 125.39Mbp, 128.27Mbp, 140.81Mbp, 141.54Mbp, 145.44Mbp] 2025-01-31 09:51:25,344 DEBUG chr7 time: 186.94254657439888 s 2025-01-31 09:51:25,391 DEBUG Processing 283/672 atomic regions from SNP 84851 to 85451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,408 DEBUG Processing 725/738 atomic regions from SNP 217493 to 218093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,432 DEBUG Processing 79/727 atomic regions from SNP 23478 to 24079 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,485 DEBUG chr7: Fitting background model for 40 segments 2025-01-31 09:51:25,584 DEBUG Processing 284/672 atomic regions from SNP 85151 to 85751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,634 DEBUG Processing 80/727 atomic regions from SNP 23779 to 24380 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,645 DEBUG Processing 726/738 atomic regions from SNP 217793 to 218393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,774 DEBUG Processing 285/672 atomic regions from SNP 85451 to 86051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,832 DEBUG Processing 81/727 atomic regions from SNP 24080 to 24681 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,858 DEBUG Processing 727/738 atomic regions from SNP 218093 to 218693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,962 DEBUG Processing 286/672 atomic regions from SNP 85751 to 86351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,027 DEBUG Processing 82/727 atomic regions from SNP 24381 to 24982 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,066 DEBUG Processing 728/738 atomic regions from SNP 218393 to 218993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,150 DEBUG Processing 287/672 atomic regions from SNP 86051 to 86651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,221 DEBUG Processing 83/727 atomic regions from SNP 24682 to 25283 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,274 DEBUG Processing 729/738 atomic regions from SNP 218693 to 219293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,337 DEBUG Processing 288/672 atomic regions from SNP 86351 to 86951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,413 DEBUG Processing 84/727 atomic regions from SNP 24983 to 25584 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,481 DEBUG Processing 730/738 atomic regions from SNP 218993 to 219593 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,526 DEBUG Processing 289/672 atomic regions from SNP 86651 to 87251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,613 DEBUG Processing 85/727 atomic regions from SNP 25284 to 25885 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,688 DEBUG Processing 731/738 atomic regions from SNP 219293 to 219893 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,716 DEBUG Processing 290/672 atomic regions from SNP 86951 to 87551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,805 DEBUG Processing 86/727 atomic regions from SNP 25585 to 26186 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,900 DEBUG Processing 732/738 atomic regions from SNP 219593 to 220193 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,908 DEBUG Processing 291/672 atomic regions from SNP 87251 to 87851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,993 DEBUG Processing 87/727 atomic regions from SNP 25886 to 26487 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,099 DEBUG Processing 292/672 atomic regions from SNP 87551 to 88151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,107 DEBUG Processing 733/738 atomic regions from SNP 219893 to 220493 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,184 DEBUG Processing 88/727 atomic regions from SNP 26187 to 26788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,298 DEBUG Processing 293/672 atomic regions from SNP 87851 to 88451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,325 DEBUG Processing 734/738 atomic regions from SNP 220193 to 220793 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,383 DEBUG Processing 89/727 atomic regions from SNP 26488 to 27089 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,492 DEBUG Processing 294/672 atomic regions from SNP 88151 to 88751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,534 DEBUG Processing 735/738 atomic regions from SNP 220493 to 221093 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,578 DEBUG Processing 90/727 atomic regions from SNP 26789 to 27390 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,687 DEBUG Processing 295/672 atomic regions from SNP 88451 to 89051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,749 DEBUG Processing 736/738 atomic regions from SNP 220793 to 221393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,777 DEBUG Processing 91/727 atomic regions from SNP 27090 to 27691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,876 DEBUG Processing 296/672 atomic regions from SNP 88751 to 89351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,961 DEBUG Processing 737/738 atomic regions from SNP 221093 to 221693 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,972 DEBUG Processing 92/727 atomic regions from SNP 27391 to 27992 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,063 DEBUG Processing 297/672 atomic regions from SNP 89051 to 89651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,164 DEBUG Processing 738/738 atomic regions from SNP 221393 to 221993 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,169 DEBUG Processing 93/727 atomic regions from SNP 27692 to 28293 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,253 DEBUG Processing 298/672 atomic regions from SNP 89351 to 89951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,279 DEBUG Unique SNPs positions in subchromosome 1: 221994 2025-01-31 09:51:28,364 DEBUG Processing 94/727 atomic regions from SNP 27993 to 28594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,463 DEBUG Processing 299/672 atomic regions from SNP 89651 to 90251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,555 DEBUG Processing 95/727 atomic regions from SNP 28294 to 28895 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,667 DEBUG Processing 300/672 atomic regions from SNP 89951 to 90551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,748 DEBUG Processing 96/727 atomic regions from SNP 28595 to 29196 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,868 DEBUG Processing 301/672 atomic regions from SNP 90251 to 90851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,945 DEBUG Processing 97/727 atomic regions from SNP 28896 to 29497 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,074 DEBUG Processing 302/672 atomic regions from SNP 90551 to 91151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,137 DEBUG Processing 98/727 atomic regions from SNP 29197 to 29798 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,281 DEBUG Processing 303/672 atomic regions from SNP 90851 to 91451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,327 DEBUG Processing 99/727 atomic regions from SNP 29498 to 30099 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,451 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:51:29,469 DEBUG Processing 304/672 atomic regions from SNP 91151 to 91751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,532 DEBUG Processing 100/727 atomic regions from SNP 29799 to 30400 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,658 DEBUG Processing 305/672 atomic regions from SNP 91451 to 92051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,752 DEBUG Processing 101/727 atomic regions from SNP 30100 to 30701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,844 DEBUG Processing 306/672 atomic regions from SNP 91751 to 92351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,976 DEBUG Processing 102/727 atomic regions from SNP 30401 to 31002 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,035 DEBUG Processing 307/672 atomic regions from SNP 92051 to 92651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,204 DEBUG Processing 103/727 atomic regions from SNP 30702 to 31303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,221 DEBUG Processing 308/672 atomic regions from SNP 92351 to 92951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,432 DEBUG Processing 309/672 atomic regions from SNP 92651 to 93251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,433 DEBUG Processing 104/727 atomic regions from SNP 31003 to 31604 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,647 DEBUG Processing 310/672 atomic regions from SNP 92951 to 93551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,660 DEBUG Processing 105/727 atomic regions from SNP 31304 to 31905 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,852 DEBUG Processing 311/672 atomic regions from SNP 93251 to 93851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,888 DEBUG Processing 106/727 atomic regions from SNP 31605 to 32206 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,062 DEBUG Processing 312/672 atomic regions from SNP 93551 to 94151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,110 DEBUG Processing 107/727 atomic regions from SNP 31906 to 32507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,255 DEBUG Processing 313/672 atomic regions from SNP 93851 to 94451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,333 DEBUG Processing 108/727 atomic regions from SNP 32207 to 32808 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,443 DEBUG Processing 314/672 atomic regions from SNP 94151 to 94751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,559 DEBUG Processing 109/727 atomic regions from SNP 32508 to 33109 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,629 DEBUG Processing 315/672 atomic regions from SNP 94451 to 95051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,780 DEBUG Processing 110/727 atomic regions from SNP 32809 to 33410 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,820 DEBUG Processing 316/672 atomic regions from SNP 94751 to 95351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,988 DEBUG Processing 111/727 atomic regions from SNP 33110 to 33711 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,014 DEBUG Processing 317/672 atomic regions from SNP 95051 to 95651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,196 DEBUG Processing 112/727 atomic regions from SNP 33411 to 34012 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,209 DEBUG Processing 318/672 atomic regions from SNP 95351 to 95951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,390 DEBUG Processing 113/727 atomic regions from SNP 33712 to 34313 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,396 DEBUG Processing 319/672 atomic regions from SNP 95651 to 96251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,585 DEBUG Processing 320/672 atomic regions from SNP 95951 to 96551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,591 DEBUG Processing 114/727 atomic regions from SNP 34013 to 34614 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,777 DEBUG Processing 321/672 atomic regions from SNP 96251 to 96851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,782 DEBUG Processing 115/727 atomic regions from SNP 34314 to 34915 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,974 DEBUG Processing 116/727 atomic regions from SNP 34615 to 35216 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,975 DEBUG Processing 322/672 atomic regions from SNP 96551 to 97151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,168 DEBUG Processing 117/727 atomic regions from SNP 34916 to 35517 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,170 DEBUG Processing 323/672 atomic regions from SNP 96851 to 97451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,358 DEBUG Processing 118/727 atomic regions from SNP 35217 to 35818 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,380 DEBUG Processing 324/672 atomic regions from SNP 97151 to 97751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,548 DEBUG Processing 119/727 atomic regions from SNP 35518 to 36119 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,591 DEBUG Processing 325/672 atomic regions from SNP 97451 to 98051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,739 DEBUG Processing 120/727 atomic regions from SNP 35819 to 36420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,808 DEBUG Processing 326/672 atomic regions from SNP 97751 to 98351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,930 DEBUG Processing 121/727 atomic regions from SNP 36120 to 36721 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,005 DEBUG Processing 327/672 atomic regions from SNP 98051 to 98651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,121 DEBUG Processing 122/727 atomic regions from SNP 36421 to 37022 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,207 DEBUG Processing 328/672 atomic regions from SNP 98351 to 98951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,311 DEBUG Processing 123/727 atomic regions from SNP 36722 to 37323 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,415 DEBUG Processing 329/672 atomic regions from SNP 98651 to 99251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,501 DEBUG Processing 124/727 atomic regions from SNP 37023 to 37624 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,602 DEBUG Processing 330/672 atomic regions from SNP 98951 to 99551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,695 DEBUG Processing 125/727 atomic regions from SNP 37324 to 37925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,790 DEBUG Processing 331/672 atomic regions from SNP 99251 to 99851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,885 DEBUG Processing 126/727 atomic regions from SNP 37625 to 38226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,975 DEBUG Processing 332/672 atomic regions from SNP 99551 to 100151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,075 DEBUG Processing 127/727 atomic regions from SNP 37926 to 38527 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,157 DEBUG Processing 333/672 atomic regions from SNP 99851 to 100451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,283 DEBUG Processing 128/727 atomic regions from SNP 38227 to 38828 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,340 DEBUG Processing 334/672 atomic regions from SNP 100151 to 100751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,476 DEBUG Processing 129/727 atomic regions from SNP 38528 to 39129 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,526 DEBUG Processing 335/672 atomic regions from SNP 100451 to 101051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,668 DEBUG Processing 130/727 atomic regions from SNP 38829 to 39430 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,734 DEBUG Processing 336/672 atomic regions from SNP 100751 to 101351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,859 DEBUG Processing 131/727 atomic regions from SNP 39130 to 39731 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,938 DEBUG Processing 337/672 atomic regions from SNP 101051 to 101651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,049 DEBUG Processing 132/727 atomic regions from SNP 39431 to 40032 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,126 DEBUG Processing 338/672 atomic regions from SNP 101351 to 101951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,238 DEBUG Processing 133/727 atomic regions from SNP 39732 to 40333 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,313 DEBUG Processing 339/672 atomic regions from SNP 101651 to 102251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,426 DEBUG Processing 134/727 atomic regions from SNP 40033 to 40634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,500 DEBUG Processing 340/672 atomic regions from SNP 101951 to 102551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,614 DEBUG Processing 135/727 atomic regions from SNP 40334 to 40935 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,688 DEBUG Processing 341/672 atomic regions from SNP 102251 to 102851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,800 DEBUG Processing 136/727 atomic regions from SNP 40635 to 41236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,874 DEBUG Processing 342/672 atomic regions from SNP 102551 to 103151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,989 DEBUG Processing 137/727 atomic regions from SNP 40936 to 41537 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,061 DEBUG Processing 343/672 atomic regions from SNP 102851 to 103451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,179 DEBUG Processing 138/727 atomic regions from SNP 41237 to 41838 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,250 DEBUG Processing 344/672 atomic regions from SNP 103151 to 103751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,371 DEBUG Processing 139/727 atomic regions from SNP 41538 to 42139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,437 DEBUG Processing 345/672 atomic regions from SNP 103451 to 104051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,559 DEBUG Processing 140/727 atomic regions from SNP 41839 to 42440 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,623 DEBUG Processing 346/672 atomic regions from SNP 103751 to 104351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,751 DEBUG Processing 141/727 atomic regions from SNP 42140 to 42741 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,813 DEBUG Processing 347/672 atomic regions from SNP 104051 to 104651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,946 DEBUG Processing 142/727 atomic regions from SNP 42441 to 43042 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,000 DEBUG Processing 348/672 atomic regions from SNP 104351 to 104951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,148 DEBUG Processing 143/727 atomic regions from SNP 42742 to 43343 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,188 DEBUG Processing 349/672 atomic regions from SNP 104651 to 105251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,341 DEBUG Processing 144/727 atomic regions from SNP 43043 to 43644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,400 DEBUG Processing 350/672 atomic regions from SNP 104951 to 105551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,536 DEBUG Processing 145/727 atomic regions from SNP 43344 to 43945 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,600 DEBUG Processing 351/672 atomic regions from SNP 105251 to 105851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,735 DEBUG Processing 146/727 atomic regions from SNP 43645 to 44246 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,797 DEBUG Processing 352/672 atomic regions from SNP 105551 to 106151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,927 DEBUG Processing 147/727 atomic regions from SNP 43946 to 44547 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,000 DEBUG Processing 353/672 atomic regions from SNP 105851 to 106451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,120 DEBUG Processing 148/727 atomic regions from SNP 44247 to 44848 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,192 DEBUG Processing 354/672 atomic regions from SNP 106151 to 106751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,314 DEBUG Processing 149/727 atomic regions from SNP 44548 to 45149 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,411 DEBUG Processing 355/672 atomic regions from SNP 106451 to 107051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,505 DEBUG Processing 150/727 atomic regions from SNP 44849 to 45450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,628 DEBUG Processing 356/672 atomic regions from SNP 106751 to 107351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,697 DEBUG Processing 151/727 atomic regions from SNP 45150 to 45751 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,824 DEBUG Processing 357/672 atomic regions from SNP 107051 to 107651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,888 DEBUG Processing 152/727 atomic regions from SNP 45451 to 46052 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,015 DEBUG Processing 358/672 atomic regions from SNP 107351 to 107951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,080 DEBUG Processing 153/727 atomic regions from SNP 45752 to 46353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,205 DEBUG Processing 359/672 atomic regions from SNP 107651 to 108251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,272 DEBUG Processing 154/727 atomic regions from SNP 46053 to 46654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,396 DEBUG Processing 360/672 atomic regions from SNP 107951 to 108551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,462 DEBUG Processing 155/727 atomic regions from SNP 46354 to 46955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,585 DEBUG Processing 361/672 atomic regions from SNP 108251 to 108851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,652 DEBUG Processing 156/727 atomic regions from SNP 46655 to 47256 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,773 DEBUG Processing 362/672 atomic regions from SNP 108551 to 109151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,842 DEBUG Processing 157/727 atomic regions from SNP 46956 to 47557 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,960 DEBUG Processing 363/672 atomic regions from SNP 108851 to 109451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,034 DEBUG Processing 158/727 atomic regions from SNP 47257 to 47858 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,145 DEBUG Processing 364/672 atomic regions from SNP 109151 to 109751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,224 DEBUG Processing 159/727 atomic regions from SNP 47558 to 48159 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,329 DEBUG Processing 365/672 atomic regions from SNP 109451 to 110051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,417 DEBUG Processing 160/727 atomic regions from SNP 47859 to 48460 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,515 DEBUG Processing 366/672 atomic regions from SNP 109751 to 110351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,608 DEBUG Processing 161/727 atomic regions from SNP 48160 to 48761 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,701 DEBUG Processing 367/672 atomic regions from SNP 110051 to 110651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,799 DEBUG Processing 162/727 atomic regions from SNP 48461 to 49062 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,888 DEBUG Processing 368/672 atomic regions from SNP 110351 to 110951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,990 DEBUG Processing 163/727 atomic regions from SNP 48762 to 49363 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,074 DEBUG Processing 369/672 atomic regions from SNP 110651 to 111251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,196 DEBUG Processing 164/727 atomic regions from SNP 49063 to 49664 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,262 DEBUG Processing 370/672 atomic regions from SNP 110951 to 111551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,409 DEBUG Processing 165/727 atomic regions from SNP 49364 to 49965 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,450 DEBUG Processing 371/672 atomic regions from SNP 111251 to 111851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,608 DEBUG Processing 166/727 atomic regions from SNP 49665 to 50266 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,655 DEBUG Processing 372/672 atomic regions from SNP 111551 to 112151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,800 DEBUG Processing 167/727 atomic regions from SNP 49966 to 50567 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,866 DEBUG Processing 373/672 atomic regions from SNP 111851 to 112451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,895 DEBUG Subchromosome time: 196.11371701210737, subchromosome SNPs: 221994 2025-01-31 09:51:42,895 DEBUG Estimated BADs: [3.56, 0.36, 0.89, 1.78, 7.12, 0.89, 1.78, 0.59, 1.78, 0.44, 0.89, 1.78, 5.34, 16.01, 3.56, 1.78, 5.34, 12.45, 1.78, 3.56, 0.44, 1.78, 5.34, 1.78, 5.34, 1.78, 3.56, 8.89, 3.56, 1.78] SNP counts: [2735, 4580, 3945, 28493, 379, 9335, 9019, 10535, 9640, 7194, 21626, 6356, 1195, 995, 2567, 19430, 2017, 879, 16672, 4804, 11091, 4058, 4045, 6299, 2156, 8733, 4700, 8713, 5504, 4299] SNP IDs counts: [2735, 4580, 3945, 28493, 379, 9335, 9019, 10535, 9640, 7194, 21626, 6356, 1195, 995, 2567, 19430, 2017, 879, 16672, 4804, 11091, 4058, 4045, 6299, 2156, 8733, 4700, 8713, 5504, 4299] Critical gap: 615387bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.68Mbp, 7.45Mbp, 9.64Mbp, 26.97Mbp, 27.17Mbp, 32.53Mbp, 37.47Mbp, 43.73Mbp, 48.98Mbp, 53.15Mbp, 66.05Mbp, 69.79Mbp, 70.41Mbp, 70.92Mbp, 72.50Mbp, 83.59Mbp, 84.64Mbp, 85.09Mbp, 94.06Mbp, 96.67Mbp, 102.99Mbp, 105.25Mbp, 107.40Mbp, 110.72Mbp, 111.85Mbp, 116.87Mbp, 119.35Mbp, 123.99Mbp, 126.90Mbp, 129.40Mbp] 2025-01-31 09:51:42,895 DEBUG chr8 time: 196.11427292227745 s 2025-01-31 09:51:42,989 DEBUG Processing 168/727 atomic regions from SNP 50267 to 50868 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,024 DEBUG chr8: Fitting background model for 30 segments 2025-01-31 09:51:43,069 DEBUG Processing 374/672 atomic regions from SNP 112151 to 112751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,179 DEBUG Processing 169/727 atomic regions from SNP 50568 to 51169 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,257 DEBUG Processing 375/672 atomic regions from SNP 112451 to 113051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,370 DEBUG Processing 170/727 atomic regions from SNP 50869 to 51470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,444 DEBUG Processing 376/672 atomic regions from SNP 112751 to 113351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,562 DEBUG Processing 171/727 atomic regions from SNP 51170 to 51771 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,633 DEBUG Processing 377/672 atomic regions from SNP 113051 to 113651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,756 DEBUG Processing 172/727 atomic regions from SNP 51471 to 52072 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,819 DEBUG Processing 378/672 atomic regions from SNP 113351 to 113951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,948 DEBUG Processing 173/727 atomic regions from SNP 51772 to 52373 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,007 DEBUG Processing 379/672 atomic regions from SNP 113651 to 114251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,142 DEBUG Processing 174/727 atomic regions from SNP 52073 to 52674 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,201 DEBUG Processing 380/672 atomic regions from SNP 113951 to 114551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,338 DEBUG Processing 175/727 atomic regions from SNP 52374 to 52975 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,387 DEBUG Processing 381/672 atomic regions from SNP 114251 to 114851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,531 DEBUG Processing 176/727 atomic regions from SNP 52675 to 53276 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,586 DEBUG Processing 382/672 atomic regions from SNP 114551 to 115151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,725 DEBUG Processing 177/727 atomic regions from SNP 52976 to 53577 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,794 DEBUG Processing 383/672 atomic regions from SNP 114851 to 115451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,919 DEBUG Processing 178/727 atomic regions from SNP 53277 to 53878 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,983 DEBUG Processing 384/672 atomic regions from SNP 115151 to 115751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,111 DEBUG Processing 179/727 atomic regions from SNP 53578 to 54179 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,172 DEBUG Processing 385/672 atomic regions from SNP 115451 to 116051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,304 DEBUG Processing 180/727 atomic regions from SNP 53879 to 54480 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,367 DEBUG Processing 386/672 atomic regions from SNP 115751 to 116351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,497 DEBUG Processing 181/727 atomic regions from SNP 54180 to 54781 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,584 DEBUG Processing 387/672 atomic regions from SNP 116051 to 116651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,691 DEBUG Processing 182/727 atomic regions from SNP 54481 to 55082 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,786 DEBUG Processing 388/672 atomic regions from SNP 116351 to 116951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,879 DEBUG Processing 183/727 atomic regions from SNP 54782 to 55383 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,006 DEBUG Processing 389/672 atomic regions from SNP 116651 to 117251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,075 DEBUG Processing 184/727 atomic regions from SNP 55083 to 55684 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,207 DEBUG Processing 390/672 atomic regions from SNP 116951 to 117551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,271 DEBUG Processing 185/727 atomic regions from SNP 55384 to 55985 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,415 DEBUG Processing 391/672 atomic regions from SNP 117251 to 117851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,471 DEBUG Processing 186/727 atomic regions from SNP 55685 to 56286 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,634 DEBUG Processing 392/672 atomic regions from SNP 117551 to 118151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,679 DEBUG Processing 187/727 atomic regions from SNP 55986 to 56587 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,840 DEBUG Processing 393/672 atomic regions from SNP 117851 to 118451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,903 DEBUG Processing 188/727 atomic regions from SNP 56287 to 56888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,034 DEBUG Processing 394/672 atomic regions from SNP 118151 to 118751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,120 DEBUG Processing 189/727 atomic regions from SNP 56588 to 57189 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,225 DEBUG Processing 395/672 atomic regions from SNP 118451 to 119051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,317 DEBUG Processing 190/727 atomic regions from SNP 56889 to 57490 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,416 DEBUG Processing 396/672 atomic regions from SNP 118751 to 119351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,511 DEBUG Processing 191/727 atomic regions from SNP 57190 to 57791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,603 DEBUG Processing 397/672 atomic regions from SNP 119051 to 119651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,681 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:51:47,682 DEBUG chr11: Signal quantile: 0.985. signal threshold: 14. Best RMSEA: 0.012 2025-01-31 09:51:47,701 DEBUG Processing 192/727 atomic regions from SNP 57491 to 58092 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,790 DEBUG Processing 398/672 atomic regions from SNP 119351 to 119951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,896 DEBUG Processing 193/727 atomic regions from SNP 57792 to 58393 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,976 DEBUG Processing 399/672 atomic regions from SNP 119651 to 120251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,092 DEBUG Processing 194/727 atomic regions from SNP 58093 to 58694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,166 DEBUG Processing 400/672 atomic regions from SNP 119951 to 120551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,288 DEBUG Processing 195/727 atomic regions from SNP 58394 to 58995 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,356 DEBUG Processing 401/672 atomic regions from SNP 120251 to 120851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,482 DEBUG Processing 196/727 atomic regions from SNP 58695 to 59296 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,547 DEBUG Processing 402/672 atomic regions from SNP 120551 to 121151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,678 DEBUG Processing 197/727 atomic regions from SNP 58996 to 59597 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,740 DEBUG Processing 403/672 atomic regions from SNP 120851 to 121451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,874 DEBUG Processing 198/727 atomic regions from SNP 59297 to 59898 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,932 DEBUG Processing 404/672 atomic regions from SNP 121151 to 121751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,067 DEBUG Processing 199/727 atomic regions from SNP 59598 to 60199 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,125 DEBUG Processing 405/672 atomic regions from SNP 121451 to 122051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,259 DEBUG Processing 200/727 atomic regions from SNP 59899 to 60500 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,320 DEBUG Processing 406/672 atomic regions from SNP 121751 to 122351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,452 DEBUG Processing 201/727 atomic regions from SNP 60200 to 60801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,507 DEBUG Processing 407/672 atomic regions from SNP 122051 to 122651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,652 DEBUG Processing 202/727 atomic regions from SNP 60501 to 61102 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,670 DEBUG chr11 total SNP count: 216595 2025-01-31 09:51:49,670 DEBUG chr11 length: 122082543 2025-01-31 09:51:49,670 DEBUG ----------------------------------------- 2025-01-31 09:51:49,670 INFO Processing SNPs in chr11 2025-01-31 09:51:49,718 DEBUG Processing 408/672 atomic regions from SNP 122351 to 122951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,844 DEBUG Processing 203/727 atomic regions from SNP 60802 to 61403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,877 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 216595)] 2025-01-31 09:51:49,933 DEBUG Processing 409/672 atomic regions from SNP 122651 to 123251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,018 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:50,036 DEBUG Processing 204/727 atomic regions from SNP 61103 to 61704 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,149 DEBUG Processing 410/672 atomic regions from SNP 122951 to 123551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,228 DEBUG Processing 205/727 atomic regions from SNP 61404 to 62005 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,346 DEBUG Processing 411/672 atomic regions from SNP 123251 to 123851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,422 DEBUG Processing 206/727 atomic regions from SNP 61705 to 62306 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,531 DEBUG Processing 412/672 atomic regions from SNP 123551 to 124151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,616 DEBUG Processing 207/727 atomic regions from SNP 62006 to 62607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,719 DEBUG Processing 413/672 atomic regions from SNP 123851 to 124451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,812 DEBUG Processing 208/727 atomic regions from SNP 62307 to 62908 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,910 DEBUG Processing 414/672 atomic regions from SNP 124151 to 124751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,010 DEBUG Processing 209/727 atomic regions from SNP 62608 to 63209 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,102 DEBUG Processing 415/672 atomic regions from SNP 124451 to 125051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,202 DEBUG Processing 210/727 atomic regions from SNP 62909 to 63510 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,291 DEBUG Processing 416/672 atomic regions from SNP 124751 to 125351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,399 DEBUG Processing 211/727 atomic regions from SNP 63210 to 63811 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,483 DEBUG Processing 417/672 atomic regions from SNP 125051 to 125651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,594 DEBUG Processing 212/727 atomic regions from SNP 63511 to 64112 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,671 DEBUG Processing 418/672 atomic regions from SNP 125351 to 125951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,787 DEBUG Processing 213/727 atomic regions from SNP 63812 to 64413 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,857 DEBUG Processing 419/672 atomic regions from SNP 125651 to 126251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,977 DEBUG Processing 214/727 atomic regions from SNP 64113 to 64714 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,043 DEBUG Processing 420/672 atomic regions from SNP 125951 to 126551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,168 DEBUG Processing 215/727 atomic regions from SNP 64414 to 65015 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,228 DEBUG Processing 421/672 atomic regions from SNP 126251 to 126851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,359 DEBUG Processing 216/727 atomic regions from SNP 64715 to 65316 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,415 DEBUG Processing 422/672 atomic regions from SNP 126551 to 127151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,549 DEBUG Processing 217/727 atomic regions from SNP 65016 to 65617 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,597 DEBUG Processing 423/672 atomic regions from SNP 126851 to 127451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,738 DEBUG Processing 218/727 atomic regions from SNP 65317 to 65918 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,780 DEBUG Processing 424/672 atomic regions from SNP 127151 to 127751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,932 DEBUG Processing 219/727 atomic regions from SNP 65618 to 66219 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,969 DEBUG Processing 425/672 atomic regions from SNP 127451 to 128051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,127 DEBUG Processing 220/727 atomic regions from SNP 65919 to 66520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,157 DEBUG Processing 426/672 atomic regions from SNP 127751 to 128351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,340 DEBUG Processing 221/727 atomic regions from SNP 66220 to 66820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,344 DEBUG Processing 427/672 atomic regions from SNP 128051 to 128651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,502 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:51:53,534 DEBUG Processing 428/672 atomic regions from SNP 128351 to 128951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,548 DEBUG Processing 222/727 atomic regions from SNP 66520 to 67120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,727 DEBUG Processing 429/672 atomic regions from SNP 128651 to 129251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,743 DEBUG Processing 223/727 atomic regions from SNP 66820 to 67420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,921 DEBUG Processing 430/672 atomic regions from SNP 128951 to 129551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,941 DEBUG Processing 224/727 atomic regions from SNP 67120 to 67720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,115 DEBUG Processing 431/672 atomic regions from SNP 129251 to 129851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,138 DEBUG Processing 225/727 atomic regions from SNP 67420 to 68020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,310 DEBUG Processing 432/672 atomic regions from SNP 129551 to 130151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,335 DEBUG Processing 226/727 atomic regions from SNP 67720 to 68320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,501 DEBUG Processing 433/672 atomic regions from SNP 129851 to 130451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,532 DEBUG Processing 227/727 atomic regions from SNP 68020 to 68620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,694 DEBUG Processing 434/672 atomic regions from SNP 130151 to 130751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,728 DEBUG Processing 228/727 atomic regions from SNP 68320 to 68920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,884 DEBUG Processing 435/672 atomic regions from SNP 130451 to 131051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,920 DEBUG Processing 229/727 atomic regions from SNP 68620 to 69220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,071 DEBUG Processing 436/672 atomic regions from SNP 130751 to 131351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,117 DEBUG Processing 230/727 atomic regions from SNP 68920 to 69520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,260 DEBUG Processing 437/672 atomic regions from SNP 131051 to 131651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,311 DEBUG Processing 231/727 atomic regions from SNP 69220 to 69820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,448 DEBUG Processing 438/672 atomic regions from SNP 131351 to 131951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,503 DEBUG Processing 232/727 atomic regions from SNP 69520 to 70120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,636 DEBUG Processing 439/672 atomic regions from SNP 131651 to 132251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,694 DEBUG Processing 233/727 atomic regions from SNP 69820 to 70420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,822 DEBUG Processing 440/672 atomic regions from SNP 131951 to 132551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,883 DEBUG Processing 234/727 atomic regions from SNP 70120 to 70720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,009 DEBUG Processing 441/672 atomic regions from SNP 132251 to 132851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,074 DEBUG Processing 235/727 atomic regions from SNP 70420 to 71020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,197 DEBUG Processing 442/672 atomic regions from SNP 132551 to 133151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,284 DEBUG Processing 236/727 atomic regions from SNP 70720 to 71320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,386 DEBUG Processing 443/672 atomic regions from SNP 132851 to 133451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,505 DEBUG Processing 237/727 atomic regions from SNP 71020 to 71620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,574 DEBUG Processing 444/672 atomic regions from SNP 133151 to 133751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,705 DEBUG Processing 238/727 atomic regions from SNP 71320 to 71920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,764 DEBUG Processing 445/672 atomic regions from SNP 133451 to 134051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,896 DEBUG Processing 239/727 atomic regions from SNP 71620 to 72220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,952 DEBUG Processing 446/672 atomic regions from SNP 133751 to 134351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,088 DEBUG Processing 240/727 atomic regions from SNP 71920 to 72520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,139 DEBUG Processing 447/672 atomic regions from SNP 134051 to 134651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,280 DEBUG Processing 241/727 atomic regions from SNP 72220 to 72820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,326 DEBUG Processing 448/672 atomic regions from SNP 134351 to 134951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,497 DEBUG Processing 242/727 atomic regions from SNP 72520 to 73120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,513 DEBUG Processing 449/672 atomic regions from SNP 134651 to 135251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,702 DEBUG Processing 450/672 atomic regions from SNP 134951 to 135551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,720 DEBUG Processing 243/727 atomic regions from SNP 72820 to 73420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,893 DEBUG Processing 451/672 atomic regions from SNP 135251 to 135851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,948 DEBUG Processing 244/727 atomic regions from SNP 73120 to 73720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,083 DEBUG Processing 452/672 atomic regions from SNP 135551 to 136151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,170 DEBUG Processing 245/727 atomic regions from SNP 73420 to 74020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,272 DEBUG Processing 453/672 atomic regions from SNP 135851 to 136451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,382 DEBUG Processing 246/727 atomic regions from SNP 73720 to 74320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,462 DEBUG Processing 454/672 atomic regions from SNP 136151 to 136751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,589 DEBUG Processing 247/727 atomic regions from SNP 74020 to 74620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,651 DEBUG Processing 455/672 atomic regions from SNP 136451 to 137051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,786 DEBUG Processing 248/727 atomic regions from SNP 74320 to 74920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,836 DEBUG Processing 456/672 atomic regions from SNP 136751 to 137351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,979 DEBUG Processing 249/727 atomic regions from SNP 74620 to 75220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,025 DEBUG Processing 457/672 atomic regions from SNP 137051 to 137651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,175 DEBUG Processing 250/727 atomic regions from SNP 74920 to 75520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,211 DEBUG Processing 458/672 atomic regions from SNP 137351 to 137951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,372 DEBUG Processing 251/727 atomic regions from SNP 75220 to 75820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,402 DEBUG Processing 459/672 atomic regions from SNP 137651 to 138251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,575 DEBUG Processing 252/727 atomic regions from SNP 75520 to 76120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,595 DEBUG Processing 460/672 atomic regions from SNP 137951 to 138551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,783 DEBUG Processing 461/672 atomic regions from SNP 138251 to 138851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,791 DEBUG Processing 253/727 atomic regions from SNP 75820 to 76420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,975 DEBUG Processing 462/672 atomic regions from SNP 138551 to 139151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,009 DEBUG Processing 254/727 atomic regions from SNP 76120 to 76720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,166 DEBUG Processing 463/672 atomic regions from SNP 138851 to 139451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,216 DEBUG Processing 255/727 atomic regions from SNP 76420 to 77020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,354 DEBUG Processing 464/672 atomic regions from SNP 139151 to 139751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,416 DEBUG Processing 256/727 atomic regions from SNP 76720 to 77320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,542 DEBUG Processing 465/672 atomic regions from SNP 139451 to 140051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,609 DEBUG Processing 257/727 atomic regions from SNP 77020 to 77620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,728 DEBUG Processing 466/672 atomic regions from SNP 139751 to 140351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,805 DEBUG Processing 258/727 atomic regions from SNP 77320 to 77920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,912 DEBUG Processing 467/672 atomic regions from SNP 140051 to 140651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,999 DEBUG Processing 259/727 atomic regions from SNP 77620 to 78220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,098 DEBUG Processing 468/672 atomic regions from SNP 140351 to 140951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,193 DEBUG Processing 260/727 atomic regions from SNP 77920 to 78520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,281 DEBUG Processing 469/672 atomic regions from SNP 140651 to 141251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,385 DEBUG Processing 261/727 atomic regions from SNP 78220 to 78820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,466 DEBUG Processing 470/672 atomic regions from SNP 140951 to 141551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,579 DEBUG Processing 262/727 atomic regions from SNP 78520 to 79120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,653 DEBUG Processing 471/672 atomic regions from SNP 141251 to 141851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,774 DEBUG Processing 263/727 atomic regions from SNP 78820 to 79420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,840 DEBUG Processing 472/672 atomic regions from SNP 141551 to 142151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,970 DEBUG Processing 264/727 atomic regions from SNP 79120 to 79720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,027 DEBUG Processing 473/672 atomic regions from SNP 141851 to 142451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,163 DEBUG Processing 265/727 atomic regions from SNP 79420 to 80020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,213 DEBUG Processing 474/672 atomic regions from SNP 142151 to 142751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,357 DEBUG Processing 266/727 atomic regions from SNP 79720 to 80320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,399 DEBUG Processing 475/672 atomic regions from SNP 142451 to 143051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,552 DEBUG Processing 267/727 atomic regions from SNP 80020 to 80620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,590 DEBUG Processing 476/672 atomic regions from SNP 142751 to 143351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,750 DEBUG Processing 268/727 atomic regions from SNP 80320 to 80920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,780 DEBUG Processing 477/672 atomic regions from SNP 143051 to 143651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,948 DEBUG Processing 269/727 atomic regions from SNP 80620 to 81220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,972 DEBUG Processing 478/672 atomic regions from SNP 143351 to 143951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,153 DEBUG Processing 270/727 atomic regions from SNP 80920 to 81520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,161 DEBUG Processing 479/672 atomic regions from SNP 143651 to 144251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,351 DEBUG Processing 480/672 atomic regions from SNP 143951 to 144551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,352 DEBUG Processing 271/727 atomic regions from SNP 81220 to 81820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,540 DEBUG Processing 481/672 atomic regions from SNP 144251 to 144851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,548 DEBUG Processing 272/727 atomic regions from SNP 81520 to 82120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,729 DEBUG Processing 482/672 atomic regions from SNP 144551 to 145151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,745 DEBUG Processing 273/727 atomic regions from SNP 81820 to 82420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,916 DEBUG Processing 483/672 atomic regions from SNP 144851 to 145451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,944 DEBUG Processing 274/727 atomic regions from SNP 82120 to 82720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,104 DEBUG Processing 484/672 atomic regions from SNP 145151 to 145751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,139 DEBUG Processing 275/727 atomic regions from SNP 82420 to 83020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,290 DEBUG Processing 485/672 atomic regions from SNP 145451 to 146051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,333 DEBUG Processing 276/727 atomic regions from SNP 82720 to 83320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,479 DEBUG Processing 486/672 atomic regions from SNP 145751 to 146351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,531 DEBUG Processing 277/727 atomic regions from SNP 83020 to 83620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,666 DEBUG Processing 487/672 atomic regions from SNP 146051 to 146651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,728 DEBUG Processing 278/727 atomic regions from SNP 83320 to 83920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,855 DEBUG Processing 488/672 atomic regions from SNP 146351 to 146951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,924 DEBUG Processing 279/727 atomic regions from SNP 83620 to 84220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,042 DEBUG Processing 489/672 atomic regions from SNP 146651 to 147251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,119 DEBUG Processing 280/727 atomic regions from SNP 83920 to 84520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,229 DEBUG Processing 490/672 atomic regions from SNP 146951 to 147551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,311 DEBUG Processing 281/727 atomic regions from SNP 84220 to 84820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,417 DEBUG Processing 491/672 atomic regions from SNP 147251 to 147851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,504 DEBUG Processing 282/727 atomic regions from SNP 84520 to 85120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,605 DEBUG Processing 492/672 atomic regions from SNP 147551 to 148151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,711 DEBUG Processing 283/727 atomic regions from SNP 84820 to 85420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,793 DEBUG Processing 493/672 atomic regions from SNP 147851 to 148451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,927 DEBUG Processing 284/727 atomic regions from SNP 85120 to 85720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,980 DEBUG Processing 494/672 atomic regions from SNP 148151 to 148751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,147 DEBUG Processing 285/727 atomic regions from SNP 85420 to 86020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,170 DEBUG Processing 495/672 atomic regions from SNP 148451 to 149051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,344 DEBUG Processing 286/727 atomic regions from SNP 85720 to 86320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,360 DEBUG Processing 496/672 atomic regions from SNP 148751 to 149351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,541 DEBUG Processing 287/727 atomic regions from SNP 86020 to 86620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,552 DEBUG Processing 497/672 atomic regions from SNP 149051 to 149651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,738 DEBUG Processing 288/727 atomic regions from SNP 86320 to 86920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,743 DEBUG Processing 498/672 atomic regions from SNP 149351 to 149951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,931 DEBUG Processing 499/672 atomic regions from SNP 149651 to 150251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,932 DEBUG Processing 289/727 atomic regions from SNP 86620 to 87220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,119 DEBUG Processing 500/672 atomic regions from SNP 149951 to 150551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,125 DEBUG Processing 290/727 atomic regions from SNP 86920 to 87520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,309 DEBUG Processing 501/672 atomic regions from SNP 150251 to 150851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,319 DEBUG Processing 291/727 atomic regions from SNP 87220 to 87820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,329 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:52:07,330 DEBUG chr13: Signal quantile: 0.990. signal threshold: 15. Best RMSEA: 0.013 2025-01-31 09:52:07,499 DEBUG Processing 502/672 atomic regions from SNP 150551 to 151151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,517 DEBUG Processing 292/727 atomic regions from SNP 87520 to 88120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,690 DEBUG Processing 503/672 atomic regions from SNP 150851 to 151451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,713 DEBUG Processing 293/727 atomic regions from SNP 87820 to 88420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,882 DEBUG Processing 504/672 atomic regions from SNP 151151 to 151751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,907 DEBUG Processing 294/727 atomic regions from SNP 88120 to 88720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,072 DEBUG Processing 505/672 atomic regions from SNP 151451 to 152051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,102 DEBUG Processing 295/727 atomic regions from SNP 88420 to 89020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,262 DEBUG Processing 506/672 atomic regions from SNP 151751 to 152351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,299 DEBUG Processing 296/727 atomic regions from SNP 88720 to 89320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,452 DEBUG Processing 507/672 atomic regions from SNP 152051 to 152651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,495 DEBUG Processing 297/727 atomic regions from SNP 89020 to 89620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,643 DEBUG Processing 508/672 atomic regions from SNP 152351 to 152951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,693 DEBUG Processing 298/727 atomic regions from SNP 89320 to 89920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,831 DEBUG Processing 509/672 atomic regions from SNP 152651 to 153251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,886 DEBUG Processing 299/727 atomic regions from SNP 89620 to 90220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,017 DEBUG Processing 510/672 atomic regions from SNP 152951 to 153551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,080 DEBUG Processing 300/727 atomic regions from SNP 89920 to 90520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,203 DEBUG Processing 511/672 atomic regions from SNP 153251 to 153851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,275 DEBUG Processing 301/727 atomic regions from SNP 90220 to 90820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,304 DEBUG chr13 total SNP count: 204189 2025-01-31 09:52:09,304 DEBUG chr13 length: 120421639 2025-01-31 09:52:09,304 DEBUG ----------------------------------------- 2025-01-31 09:52:09,304 INFO Processing SNPs in chr13 2025-01-31 09:52:09,390 DEBUG Processing 512/672 atomic regions from SNP 153551 to 154151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,468 DEBUG Processing 302/727 atomic regions from SNP 90520 to 91120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,499 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 204189)] 2025-01-31 09:52:09,575 DEBUG Processing 513/672 atomic regions from SNP 153851 to 154451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,634 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:09,660 DEBUG Processing 303/727 atomic regions from SNP 90820 to 91420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,760 DEBUG Processing 514/672 atomic regions from SNP 154151 to 154751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,858 DEBUG Processing 304/727 atomic regions from SNP 91120 to 91720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,946 DEBUG Processing 515/672 atomic regions from SNP 154451 to 155051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,049 DEBUG Processing 305/727 atomic regions from SNP 91420 to 92020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,130 DEBUG Processing 516/672 atomic regions from SNP 154751 to 155351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,245 DEBUG Processing 306/727 atomic regions from SNP 91720 to 92320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,315 DEBUG Processing 517/672 atomic regions from SNP 155051 to 155651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,458 DEBUG Processing 307/727 atomic regions from SNP 92020 to 92620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,501 DEBUG Processing 518/672 atomic regions from SNP 155351 to 155951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,677 DEBUG Processing 308/727 atomic regions from SNP 92320 to 92920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,688 DEBUG Processing 519/672 atomic regions from SNP 155651 to 156251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,873 DEBUG Processing 309/727 atomic regions from SNP 92620 to 93220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,877 DEBUG Processing 520/672 atomic regions from SNP 155951 to 156551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,065 DEBUG Processing 521/672 atomic regions from SNP 156251 to 156851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,072 DEBUG Processing 310/727 atomic regions from SNP 92920 to 93520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,253 DEBUG Processing 522/672 atomic regions from SNP 156551 to 157151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,268 DEBUG Processing 311/727 atomic regions from SNP 93220 to 93820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,457 DEBUG Processing 523/672 atomic regions from SNP 156851 to 157451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,463 DEBUG Processing 312/727 atomic regions from SNP 93520 to 94120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,644 DEBUG Processing 524/672 atomic regions from SNP 157151 to 157751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,657 DEBUG Processing 313/727 atomic regions from SNP 93820 to 94420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,832 DEBUG Processing 525/672 atomic regions from SNP 157451 to 158051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,851 DEBUG Processing 314/727 atomic regions from SNP 94120 to 94720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,021 DEBUG Processing 526/672 atomic regions from SNP 157751 to 158351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,045 DEBUG Processing 315/727 atomic regions from SNP 94420 to 95020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,209 DEBUG Processing 527/672 atomic regions from SNP 158051 to 158651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,239 DEBUG Processing 316/727 atomic regions from SNP 94720 to 95320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,399 DEBUG Processing 528/672 atomic regions from SNP 158351 to 158951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,432 DEBUG Processing 317/727 atomic regions from SNP 95020 to 95620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,587 DEBUG Processing 529/672 atomic regions from SNP 158651 to 159251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,623 DEBUG Processing 318/727 atomic regions from SNP 95320 to 95920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,774 DEBUG Processing 530/672 atomic regions from SNP 158951 to 159551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,825 DEBUG Processing 319/727 atomic regions from SNP 95620 to 96220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,962 DEBUG Processing 531/672 atomic regions from SNP 159251 to 159851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,022 DEBUG Processing 320/727 atomic regions from SNP 95920 to 96520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,149 DEBUG Processing 532/672 atomic regions from SNP 159551 to 160151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,228 DEBUG Processing 321/727 atomic regions from SNP 96220 to 96820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,336 DEBUG Processing 533/672 atomic regions from SNP 159851 to 160451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,451 DEBUG Processing 322/727 atomic regions from SNP 96520 to 97120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,523 DEBUG Processing 534/672 atomic regions from SNP 160151 to 160751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,669 DEBUG Processing 323/727 atomic regions from SNP 96820 to 97420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,709 DEBUG Processing 535/672 atomic regions from SNP 160451 to 161051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,873 DEBUG Processing 324/727 atomic regions from SNP 97120 to 97720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,896 DEBUG Processing 536/672 atomic regions from SNP 160751 to 161351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,082 DEBUG Processing 537/672 atomic regions from SNP 161051 to 161651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,088 DEBUG Processing 325/727 atomic regions from SNP 97420 to 98020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,269 DEBUG Processing 538/672 atomic regions from SNP 161351 to 161951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,315 DEBUG Processing 326/727 atomic regions from SNP 97720 to 98320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,456 DEBUG Processing 539/672 atomic regions from SNP 161651 to 162251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,538 DEBUG Processing 327/727 atomic regions from SNP 98020 to 98620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,641 DEBUG Processing 540/672 atomic regions from SNP 161951 to 162551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,750 DEBUG Processing 328/727 atomic regions from SNP 98320 to 98920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,827 DEBUG Processing 541/672 atomic regions from SNP 162251 to 162851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,959 DEBUG Processing 329/727 atomic regions from SNP 98620 to 99220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,013 DEBUG Processing 542/672 atomic regions from SNP 162551 to 163151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,181 DEBUG Processing 330/727 atomic regions from SNP 98920 to 99520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,202 DEBUG Processing 543/672 atomic regions from SNP 162851 to 163451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,390 DEBUG Processing 544/672 atomic regions from SNP 163151 to 163751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,396 DEBUG Processing 331/727 atomic regions from SNP 99220 to 99820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,579 DEBUG Processing 545/672 atomic regions from SNP 163451 to 164051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,615 DEBUG Processing 332/727 atomic regions from SNP 99520 to 100120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,765 DEBUG Processing 546/672 atomic regions from SNP 163751 to 164351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,829 DEBUG Processing 333/727 atomic regions from SNP 99820 to 100420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,977 DEBUG Processing 547/672 atomic regions from SNP 164051 to 164651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,033 DEBUG Processing 334/727 atomic regions from SNP 100120 to 100720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,177 DEBUG Processing 548/672 atomic regions from SNP 164351 to 164951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,232 DEBUG Processing 335/727 atomic regions from SNP 100420 to 101020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,367 DEBUG Processing 549/672 atomic regions from SNP 164651 to 165251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,441 DEBUG Processing 336/727 atomic regions from SNP 100720 to 101320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,558 DEBUG Processing 550/672 atomic regions from SNP 164951 to 165551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,647 DEBUG Processing 337/727 atomic regions from SNP 101020 to 101620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,744 DEBUG Processing 551/672 atomic regions from SNP 165251 to 165851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,858 DEBUG Processing 338/727 atomic regions from SNP 101320 to 101920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,933 DEBUG Processing 552/672 atomic regions from SNP 165551 to 166151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,084 DEBUG Processing 339/727 atomic regions from SNP 101620 to 102220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,120 DEBUG Processing 553/672 atomic regions from SNP 165851 to 166451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,282 DEBUG Processing 340/727 atomic regions from SNP 101920 to 102520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,306 DEBUG Processing 554/672 atomic regions from SNP 166151 to 166751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,473 DEBUG Processing 341/727 atomic regions from SNP 102220 to 102820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,493 DEBUG Processing 555/672 atomic regions from SNP 166451 to 167051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,663 DEBUG Processing 342/727 atomic regions from SNP 102520 to 103120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,678 DEBUG Processing 556/672 atomic regions from SNP 166751 to 167351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,857 DEBUG Processing 343/727 atomic regions from SNP 102820 to 103420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,865 DEBUG Processing 557/672 atomic regions from SNP 167051 to 167651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,880 DEBUG Segmenting atomic regions: 2025-01-31 09:52:17,971 DEBUG Processing 1/720 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,051 DEBUG Processing 344/727 atomic regions from SNP 103120 to 103720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,053 DEBUG Processing 558/672 atomic regions from SNP 167351 to 167951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,190 DEBUG Processing 2/720 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,241 DEBUG Processing 559/672 atomic regions from SNP 167651 to 168251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,244 DEBUG Processing 345/727 atomic regions from SNP 103420 to 104020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,397 DEBUG Processing 3/720 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,431 DEBUG Processing 560/672 atomic regions from SNP 167951 to 168551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,437 DEBUG Processing 346/727 atomic regions from SNP 103720 to 104320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,596 DEBUG Processing 4/720 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,619 DEBUG Processing 561/672 atomic regions from SNP 168251 to 168851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,630 DEBUG Processing 347/727 atomic regions from SNP 104020 to 104620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,795 DEBUG Processing 5/720 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,807 DEBUG Processing 562/672 atomic regions from SNP 168551 to 169151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,822 DEBUG Processing 348/727 atomic regions from SNP 104320 to 104920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,995 DEBUG Processing 563/672 atomic regions from SNP 168851 to 169451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,010 DEBUG Processing 6/720 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,034 DEBUG Processing 349/727 atomic regions from SNP 104620 to 105220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,184 DEBUG Processing 564/672 atomic regions from SNP 169151 to 169751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,229 DEBUG Processing 7/720 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,239 DEBUG Processing 350/727 atomic regions from SNP 104920 to 105520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,373 DEBUG Processing 565/672 atomic regions from SNP 169451 to 170051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,432 DEBUG Processing 351/727 atomic regions from SNP 105220 to 105820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,448 DEBUG Processing 8/720 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,561 DEBUG Processing 566/672 atomic regions from SNP 169751 to 170351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,625 DEBUG Processing 352/727 atomic regions from SNP 105520 to 106120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,651 DEBUG Processing 9/720 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,749 DEBUG Processing 567/672 atomic regions from SNP 170051 to 170651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,836 DEBUG Processing 353/727 atomic regions from SNP 105820 to 106420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,849 DEBUG Processing 10/720 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,937 DEBUG Processing 568/672 atomic regions from SNP 170351 to 170951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,046 DEBUG Processing 354/727 atomic regions from SNP 106120 to 106720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,063 DEBUG Processing 11/720 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,123 DEBUG Processing 569/672 atomic regions from SNP 170651 to 171251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,252 DEBUG Processing 355/727 atomic regions from SNP 106420 to 107020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,282 DEBUG Processing 12/720 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,310 DEBUG Processing 570/672 atomic regions from SNP 170951 to 171551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,470 DEBUG Processing 356/727 atomic regions from SNP 106720 to 107320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,497 DEBUG Processing 571/672 atomic regions from SNP 171251 to 171851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,507 DEBUG Processing 13/720 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,673 DEBUG Processing 357/727 atomic regions from SNP 107020 to 107620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,685 DEBUG Processing 572/672 atomic regions from SNP 171551 to 172151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,721 DEBUG Processing 14/720 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,874 DEBUG Processing 573/672 atomic regions from SNP 171851 to 172451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,878 DEBUG Processing 358/727 atomic regions from SNP 107320 to 107920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,918 DEBUG Processing 15/720 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,063 DEBUG Processing 574/672 atomic regions from SNP 172151 to 172751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,095 DEBUG Processing 359/727 atomic regions from SNP 107620 to 108220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,128 DEBUG Processing 16/720 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,251 DEBUG Processing 575/672 atomic regions from SNP 172451 to 173051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,295 DEBUG Processing 360/727 atomic regions from SNP 107920 to 108520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,327 DEBUG Processing 17/720 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,437 DEBUG Processing 576/672 atomic regions from SNP 172751 to 173351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,498 DEBUG Processing 361/727 atomic regions from SNP 108220 to 108820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,546 DEBUG Processing 18/720 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,626 DEBUG Processing 577/672 atomic regions from SNP 173051 to 173651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,690 DEBUG Processing 362/727 atomic regions from SNP 108520 to 109120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,761 DEBUG Processing 19/720 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,812 DEBUG Processing 578/672 atomic regions from SNP 173351 to 173951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,882 DEBUG Processing 363/727 atomic regions from SNP 108820 to 109420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,967 DEBUG Processing 20/720 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,001 DEBUG Processing 579/672 atomic regions from SNP 173651 to 174251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,087 DEBUG Processing 364/727 atomic regions from SNP 109120 to 109720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,189 DEBUG Processing 580/672 atomic regions from SNP 173951 to 174551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,191 DEBUG Processing 21/720 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,301 DEBUG Processing 365/727 atomic regions from SNP 109420 to 110020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,376 DEBUG Processing 581/672 atomic regions from SNP 174251 to 174851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,421 DEBUG Processing 22/720 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,521 DEBUG Processing 366/727 atomic regions from SNP 109720 to 110320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,563 DEBUG Processing 582/672 atomic regions from SNP 174551 to 175151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,633 DEBUG Processing 23/720 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,745 DEBUG Processing 367/727 atomic regions from SNP 110020 to 110620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,751 DEBUG Processing 583/672 atomic regions from SNP 174851 to 175451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,830 DEBUG Processing 24/720 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,940 DEBUG Processing 584/672 atomic regions from SNP 175151 to 175751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,959 DEBUG Processing 368/727 atomic regions from SNP 110320 to 110920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,025 DEBUG Processing 25/720 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,128 DEBUG Processing 585/672 atomic regions from SNP 175451 to 176051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,170 DEBUG Processing 369/727 atomic regions from SNP 110620 to 111220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,220 DEBUG Processing 26/720 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,317 DEBUG Processing 586/672 atomic regions from SNP 175751 to 176351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,387 DEBUG Processing 370/727 atomic regions from SNP 110920 to 111520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,416 DEBUG Processing 27/720 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,505 DEBUG Processing 587/672 atomic regions from SNP 176051 to 176651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,603 DEBUG Processing 371/727 atomic regions from SNP 111220 to 111820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,611 DEBUG Processing 28/720 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,694 DEBUG Processing 588/672 atomic regions from SNP 176351 to 176951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,806 DEBUG Processing 29/720 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,817 DEBUG Processing 372/727 atomic regions from SNP 111520 to 112120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,883 DEBUG Processing 589/672 atomic regions from SNP 176651 to 177251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,001 DEBUG Processing 30/720 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,029 DEBUG Processing 373/727 atomic regions from SNP 111820 to 112420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,070 DEBUG Processing 590/672 atomic regions from SNP 176951 to 177551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,195 DEBUG Processing 31/720 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,252 DEBUG Processing 374/727 atomic regions from SNP 112120 to 112720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,259 DEBUG Processing 591/672 atomic regions from SNP 177251 to 177851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,384 DEBUG Processing 32/720 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,448 DEBUG Processing 592/672 atomic regions from SNP 177551 to 178151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,466 DEBUG Processing 375/727 atomic regions from SNP 112420 to 113020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,574 DEBUG Processing 33/720 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,637 DEBUG Processing 593/672 atomic regions from SNP 177851 to 178451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,689 DEBUG Processing 376/727 atomic regions from SNP 112720 to 113320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,765 DEBUG Processing 34/720 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,825 DEBUG Processing 594/672 atomic regions from SNP 178151 to 178751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,904 DEBUG Processing 377/727 atomic regions from SNP 113020 to 113620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,957 DEBUG Processing 35/720 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,011 DEBUG Processing 595/672 atomic regions from SNP 178451 to 179051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,114 DEBUG Processing 378/727 atomic regions from SNP 113320 to 113920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,150 DEBUG Processing 36/720 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,197 DEBUG Processing 596/672 atomic regions from SNP 178751 to 179351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,318 DEBUG Processing 379/727 atomic regions from SNP 113620 to 114220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,347 DEBUG Processing 37/720 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,385 DEBUG Processing 597/672 atomic regions from SNP 179051 to 179651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,541 DEBUG Processing 38/720 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,542 DEBUG Processing 380/727 atomic regions from SNP 113920 to 114520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,572 DEBUG Processing 598/672 atomic regions from SNP 179351 to 179951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,739 DEBUG Processing 39/720 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,756 DEBUG Processing 381/727 atomic regions from SNP 114220 to 114820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,761 DEBUG Processing 599/672 atomic regions from SNP 179651 to 180251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,938 DEBUG Processing 40/720 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,949 DEBUG Processing 600/672 atomic regions from SNP 179951 to 180551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,951 DEBUG Processing 382/727 atomic regions from SNP 114520 to 115120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,134 DEBUG Processing 41/720 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,137 DEBUG Processing 601/672 atomic regions from SNP 180251 to 180851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,163 DEBUG Processing 383/727 atomic regions from SNP 114820 to 115420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,328 DEBUG Processing 602/672 atomic regions from SNP 180551 to 181151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,331 DEBUG Processing 42/720 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,365 DEBUG Processing 384/727 atomic regions from SNP 115120 to 115720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,517 DEBUG Processing 603/672 atomic regions from SNP 180851 to 181451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,526 DEBUG Processing 43/720 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,583 DEBUG Processing 385/727 atomic regions from SNP 115420 to 116020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,706 DEBUG Processing 604/672 atomic regions from SNP 181151 to 181751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,721 DEBUG Processing 44/720 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,796 DEBUG Processing 386/727 atomic regions from SNP 115720 to 116320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,894 DEBUG Processing 605/672 atomic regions from SNP 181451 to 182051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,919 DEBUG Processing 45/720 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,987 DEBUG Processing 387/727 atomic regions from SNP 116020 to 116620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,081 DEBUG Processing 606/672 atomic regions from SNP 181751 to 182351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,116 DEBUG Processing 46/720 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,177 DEBUG Processing 388/727 atomic regions from SNP 116320 to 116920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,267 DEBUG Processing 607/672 atomic regions from SNP 182051 to 182651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,311 DEBUG Processing 47/720 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,368 DEBUG Processing 389/727 atomic regions from SNP 116620 to 117220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,461 DEBUG Processing 608/672 atomic regions from SNP 182351 to 182951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,507 DEBUG Processing 48/720 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,574 DEBUG Processing 390/727 atomic regions from SNP 116920 to 117520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,648 DEBUG Processing 609/672 atomic regions from SNP 182651 to 183251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,699 DEBUG Processing 49/720 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,782 DEBUG Processing 391/727 atomic regions from SNP 117220 to 117820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,834 DEBUG Processing 610/672 atomic regions from SNP 182951 to 183551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,888 DEBUG Processing 50/720 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,973 DEBUG Processing 392/727 atomic regions from SNP 117520 to 118120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,018 DEBUG Processing 611/672 atomic regions from SNP 183251 to 183851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,077 DEBUG Processing 51/720 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,162 DEBUG Processing 393/727 atomic regions from SNP 117820 to 118420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,203 DEBUG Processing 612/672 atomic regions from SNP 183551 to 184151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,274 DEBUG Processing 52/720 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,356 DEBUG Processing 394/727 atomic regions from SNP 118120 to 118720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,391 DEBUG Processing 613/672 atomic regions from SNP 183851 to 184451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,462 DEBUG Processing 53/720 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,547 DEBUG Processing 395/727 atomic regions from SNP 118420 to 119020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,577 DEBUG Processing 614/672 atomic regions from SNP 184151 to 184751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,651 DEBUG Processing 54/720 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,738 DEBUG Processing 396/727 atomic regions from SNP 118720 to 119320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,766 DEBUG Processing 615/672 atomic regions from SNP 184451 to 185051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,842 DEBUG Processing 55/720 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,931 DEBUG Processing 397/727 atomic regions from SNP 119020 to 119620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,952 DEBUG Processing 616/672 atomic regions from SNP 184751 to 185351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,042 DEBUG Processing 56/720 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,136 DEBUG Processing 398/727 atomic regions from SNP 119320 to 119920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,150 DEBUG Processing 617/672 atomic regions from SNP 185051 to 185651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,239 DEBUG Processing 57/720 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,334 DEBUG Processing 399/727 atomic regions from SNP 119620 to 120220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,339 DEBUG Processing 618/672 atomic regions from SNP 185351 to 185951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,433 DEBUG Processing 58/720 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,535 DEBUG Processing 619/672 atomic regions from SNP 185651 to 186251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,541 DEBUG Processing 400/727 atomic regions from SNP 119920 to 120520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,631 DEBUG Processing 59/720 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,737 DEBUG Processing 620/672 atomic regions from SNP 185951 to 186551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,741 DEBUG Processing 401/727 atomic regions from SNP 120220 to 120820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,830 DEBUG Processing 60/720 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,936 DEBUG Processing 621/672 atomic regions from SNP 186251 to 186851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,942 DEBUG Processing 402/727 atomic regions from SNP 120520 to 121120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,029 DEBUG Processing 61/720 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,126 DEBUG Processing 622/672 atomic regions from SNP 186551 to 187151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,137 DEBUG Processing 403/727 atomic regions from SNP 120820 to 121420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,227 DEBUG Processing 62/720 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,320 DEBUG Processing 623/672 atomic regions from SNP 186851 to 187451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,334 DEBUG Processing 404/727 atomic regions from SNP 121120 to 121720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,423 DEBUG Processing 63/720 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,510 DEBUG Processing 624/672 atomic regions from SNP 187151 to 187751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,529 DEBUG Processing 405/727 atomic regions from SNP 121420 to 122020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,621 DEBUG Processing 64/720 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,700 DEBUG Processing 625/672 atomic regions from SNP 187451 to 188051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,724 DEBUG Processing 406/727 atomic regions from SNP 121720 to 122320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,822 DEBUG Processing 65/720 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,891 DEBUG Processing 626/672 atomic regions from SNP 187751 to 188351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,923 DEBUG Processing 407/727 atomic regions from SNP 122020 to 122620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,029 DEBUG Processing 66/720 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,083 DEBUG Processing 627/672 atomic regions from SNP 188051 to 188651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,131 DEBUG Processing 408/727 atomic regions from SNP 122320 to 122920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,234 DEBUG Processing 67/720 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,274 DEBUG Processing 628/672 atomic regions from SNP 188351 to 188951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,339 DEBUG Processing 409/727 atomic regions from SNP 122620 to 123220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,437 DEBUG Processing 68/720 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,464 DEBUG Processing 629/672 atomic regions from SNP 188651 to 189251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,552 DEBUG Processing 410/727 atomic regions from SNP 122920 to 123520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,639 DEBUG Processing 69/720 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,655 DEBUG Processing 630/672 atomic regions from SNP 188951 to 189551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,749 DEBUG Processing 411/727 atomic regions from SNP 123220 to 123820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,843 DEBUG Processing 70/720 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,847 DEBUG Processing 631/672 atomic regions from SNP 189251 to 189851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,946 DEBUG Processing 412/727 atomic regions from SNP 123520 to 124120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,038 DEBUG Processing 632/672 atomic regions from SNP 189551 to 190151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,044 DEBUG Processing 71/720 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,142 DEBUG Processing 413/727 atomic regions from SNP 123820 to 124420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,229 DEBUG Processing 633/672 atomic regions from SNP 189851 to 190451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,244 DEBUG Processing 72/720 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,356 DEBUG Processing 414/727 atomic regions from SNP 124120 to 124720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,419 DEBUG Processing 634/672 atomic regions from SNP 190151 to 190751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,440 DEBUG Processing 73/720 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,558 DEBUG Processing 415/727 atomic regions from SNP 124420 to 125020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,612 DEBUG Processing 635/672 atomic regions from SNP 190451 to 191051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,638 DEBUG Processing 74/720 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,755 DEBUG Processing 416/727 atomic regions from SNP 124720 to 125320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,804 DEBUG Processing 636/672 atomic regions from SNP 190751 to 191351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,838 DEBUG Processing 75/720 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,958 DEBUG Processing 417/727 atomic regions from SNP 125020 to 125620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,994 DEBUG Processing 637/672 atomic regions from SNP 191051 to 191651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,040 DEBUG Processing 76/720 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,157 DEBUG Processing 418/727 atomic regions from SNP 125320 to 125920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,186 DEBUG Processing 638/672 atomic regions from SNP 191351 to 191951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,241 DEBUG Processing 77/720 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,374 DEBUG Processing 419/727 atomic regions from SNP 125620 to 126220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,385 DEBUG Processing 639/672 atomic regions from SNP 191651 to 192251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,441 DEBUG Processing 78/720 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,587 DEBUG Processing 640/672 atomic regions from SNP 191951 to 192551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,593 DEBUG Processing 420/727 atomic regions from SNP 125920 to 126520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,641 DEBUG Processing 79/720 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,778 DEBUG Processing 641/672 atomic regions from SNP 192251 to 192851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,811 DEBUG Processing 421/727 atomic regions from SNP 126220 to 126820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,842 DEBUG Processing 80/720 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,970 DEBUG Processing 642/672 atomic regions from SNP 192551 to 193151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,010 DEBUG Processing 422/727 atomic regions from SNP 126520 to 127120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,043 DEBUG Processing 81/720 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,160 DEBUG Processing 643/672 atomic regions from SNP 192851 to 193451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,210 DEBUG Processing 423/727 atomic regions from SNP 126820 to 127420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,242 DEBUG Processing 82/720 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,347 DEBUG Processing 644/672 atomic regions from SNP 193151 to 193751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,407 DEBUG Processing 424/727 atomic regions from SNP 127120 to 127720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,441 DEBUG Processing 83/720 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,537 DEBUG Processing 645/672 atomic regions from SNP 193451 to 194051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,602 DEBUG Processing 425/727 atomic regions from SNP 127420 to 128020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,640 DEBUG Processing 84/720 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,726 DEBUG Processing 646/672 atomic regions from SNP 193751 to 194351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,795 DEBUG Processing 426/727 atomic regions from SNP 127720 to 128320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,841 DEBUG Processing 85/720 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,918 DEBUG Processing 647/672 atomic regions from SNP 194051 to 194651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,990 DEBUG Processing 427/727 atomic regions from SNP 128020 to 128620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,043 DEBUG Processing 86/720 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,107 DEBUG Processing 648/672 atomic regions from SNP 194351 to 194951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,183 DEBUG Processing 428/727 atomic regions from SNP 128320 to 128920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,242 DEBUG Processing 87/720 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,296 DEBUG Processing 649/672 atomic regions from SNP 194651 to 195251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,377 DEBUG Processing 429/727 atomic regions from SNP 128620 to 129220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,443 DEBUG Processing 88/720 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,486 DEBUG Processing 650/672 atomic regions from SNP 194951 to 195551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,510 DEBUG Segmenting atomic regions: 2025-01-31 09:52:35,571 DEBUG Processing 430/727 atomic regions from SNP 128920 to 129520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,597 DEBUG Processing 1/679 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:35,646 DEBUG Processing 89/720 atomic regions from SNP 26488 to 27089 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,674 DEBUG Processing 651/672 atomic regions from SNP 195251 to 195851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,767 DEBUG Processing 431/727 atomic regions from SNP 129220 to 129820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,788 DEBUG Processing 2/679 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:35,848 DEBUG Processing 90/720 atomic regions from SNP 26789 to 27390 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,866 DEBUG Processing 652/672 atomic regions from SNP 195551 to 196151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,962 DEBUG Processing 432/727 atomic regions from SNP 129520 to 130120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,981 DEBUG Processing 3/679 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:36,050 DEBUG Processing 91/720 atomic regions from SNP 27090 to 27691 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,059 DEBUG Processing 653/672 atomic regions from SNP 195851 to 196451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,157 DEBUG Processing 433/727 atomic regions from SNP 129820 to 130420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,196 DEBUG Processing 4/679 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:36,251 DEBUG Processing 92/720 atomic regions from SNP 27391 to 27992 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,272 DEBUG Processing 654/672 atomic regions from SNP 196151 to 196751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,355 DEBUG Processing 434/727 atomic regions from SNP 130120 to 130720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,399 DEBUG Processing 5/679 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:36,450 DEBUG Processing 93/720 atomic regions from SNP 27692 to 28293 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,478 DEBUG Processing 655/672 atomic regions from SNP 196451 to 197051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,559 DEBUG Processing 435/727 atomic regions from SNP 130420 to 131020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,598 DEBUG Processing 6/679 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:36,647 DEBUG Processing 94/720 atomic regions from SNP 27993 to 28594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,671 DEBUG Processing 656/672 atomic regions from SNP 196751 to 197351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,760 DEBUG Processing 436/727 atomic regions from SNP 130720 to 131320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,791 DEBUG Processing 7/679 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:36,849 DEBUG Processing 95/720 atomic regions from SNP 28294 to 28895 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,889 DEBUG Processing 657/672 atomic regions from SNP 197051 to 197651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,980 DEBUG Processing 437/727 atomic regions from SNP 131020 to 131620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,983 DEBUG Processing 8/679 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,049 DEBUG Processing 96/720 atomic regions from SNP 28595 to 29196 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,103 DEBUG Processing 658/672 atomic regions from SNP 197351 to 197951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,174 DEBUG Processing 9/679 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,200 DEBUG Processing 438/727 atomic regions from SNP 131320 to 131920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,250 DEBUG Processing 97/720 atomic regions from SNP 28896 to 29497 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,315 DEBUG Processing 659/672 atomic regions from SNP 197651 to 198251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,367 DEBUG Processing 10/679 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,395 DEBUG Processing 439/727 atomic regions from SNP 131620 to 132220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,448 DEBUG Processing 98/720 atomic regions from SNP 29197 to 29798 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,513 DEBUG Processing 660/672 atomic regions from SNP 197951 to 198551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,564 DEBUG Processing 11/679 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,592 DEBUG Processing 440/727 atomic regions from SNP 131920 to 132520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,645 DEBUG Processing 99/720 atomic regions from SNP 29498 to 30099 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,703 DEBUG Processing 661/672 atomic regions from SNP 198251 to 198851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,762 DEBUG Processing 12/679 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,790 DEBUG Processing 441/727 atomic regions from SNP 132220 to 132820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,845 DEBUG Processing 100/720 atomic regions from SNP 29799 to 30400 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,894 DEBUG Processing 662/672 atomic regions from SNP 198551 to 199151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,957 DEBUG Processing 13/679 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,987 DEBUG Processing 442/727 atomic regions from SNP 132520 to 133120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,053 DEBUG Processing 101/720 atomic regions from SNP 30100 to 30701 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,085 DEBUG Processing 663/672 atomic regions from SNP 198851 to 199451 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,151 DEBUG Processing 14/679 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,189 DEBUG Processing 443/727 atomic regions from SNP 132820 to 133420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,267 DEBUG Processing 102/720 atomic regions from SNP 30401 to 31002 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,279 DEBUG Processing 664/672 atomic regions from SNP 199151 to 199751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,341 DEBUG Processing 15/679 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,384 DEBUG Processing 444/727 atomic regions from SNP 133120 to 133720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,469 DEBUG Processing 665/672 atomic regions from SNP 199451 to 200051 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,483 DEBUG Processing 103/720 atomic regions from SNP 30702 to 31303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,534 DEBUG Processing 16/679 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,578 DEBUG Processing 445/727 atomic regions from SNP 133420 to 134020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,660 DEBUG Processing 666/672 atomic regions from SNP 199751 to 200351 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,686 DEBUG Processing 104/720 atomic regions from SNP 31003 to 31604 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,729 DEBUG Processing 17/679 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,775 DEBUG Processing 446/727 atomic regions from SNP 133720 to 134320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,851 DEBUG Processing 667/672 atomic regions from SNP 200051 to 200651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,888 DEBUG Processing 105/720 atomic regions from SNP 31304 to 31905 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,921 DEBUG Processing 18/679 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,971 DEBUG Processing 447/727 atomic regions from SNP 134020 to 134620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,041 DEBUG Processing 668/672 atomic regions from SNP 200351 to 200951 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,079 DEBUG Processing 106/720 atomic regions from SNP 31605 to 32206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,113 DEBUG Processing 19/679 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,166 DEBUG Processing 448/727 atomic regions from SNP 134320 to 134920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,232 DEBUG Processing 669/672 atomic regions from SNP 200651 to 201251 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,272 DEBUG Processing 107/720 atomic regions from SNP 31906 to 32507 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,303 DEBUG Processing 20/679 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,363 DEBUG Processing 449/727 atomic regions from SNP 134620 to 135220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,423 DEBUG Processing 670/672 atomic regions from SNP 200951 to 201551 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,467 DEBUG Processing 108/720 atomic regions from SNP 32207 to 32808 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,494 DEBUG Processing 21/679 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,556 DEBUG Processing 450/727 atomic regions from SNP 134920 to 135520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,614 DEBUG Processing 671/672 atomic regions from SNP 201251 to 201851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,666 DEBUG Processing 109/720 atomic regions from SNP 32508 to 33109 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,686 DEBUG Processing 22/679 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,751 DEBUG Processing 451/727 atomic regions from SNP 135220 to 135820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,811 DEBUG Processing 672/672 atomic regions from SNP 201551 to 202151 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,865 DEBUG Processing 110/720 atomic regions from SNP 32809 to 33410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,883 DEBUG Processing 23/679 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,919 DEBUG Unique SNPs positions in subchromosome 2: 202152 2025-01-31 09:52:39,957 DEBUG Processing 452/727 atomic regions from SNP 135520 to 136120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,061 DEBUG Processing 111/720 atomic regions from SNP 33110 to 33711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,075 DEBUG Processing 24/679 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,168 DEBUG Processing 453/727 atomic regions from SNP 135820 to 136420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,252 DEBUG Processing 112/720 atomic regions from SNP 33411 to 34012 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,261 DEBUG Processing 25/679 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,383 DEBUG Processing 454/727 atomic regions from SNP 136120 to 136720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,448 DEBUG Processing 113/720 atomic regions from SNP 33712 to 34313 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,452 DEBUG Processing 26/679 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,590 DEBUG Processing 455/727 atomic regions from SNP 136420 to 137020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,644 DEBUG Processing 27/679 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,646 DEBUG Processing 114/720 atomic regions from SNP 34013 to 34614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,806 DEBUG Processing 456/727 atomic regions from SNP 136720 to 137320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,836 DEBUG Processing 28/679 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,846 DEBUG Processing 115/720 atomic regions from SNP 34314 to 34915 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,000 DEBUG Processing 457/727 atomic regions from SNP 137020 to 137620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,030 DEBUG Processing 29/679 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,059 DEBUG Processing 116/720 atomic regions from SNP 34615 to 35216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,195 DEBUG Processing 458/727 atomic regions from SNP 137320 to 137920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,222 DEBUG Processing 30/679 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,281 DEBUG Processing 117/720 atomic regions from SNP 34916 to 35517 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,391 DEBUG Processing 459/727 atomic regions from SNP 137620 to 138220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,415 DEBUG Processing 31/679 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,484 DEBUG Processing 118/720 atomic regions from SNP 35217 to 35818 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,590 DEBUG Processing 460/727 atomic regions from SNP 137920 to 138520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,609 DEBUG Processing 32/679 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,676 DEBUG Processing 119/720 atomic regions from SNP 35518 to 36119 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,785 DEBUG Processing 461/727 atomic regions from SNP 138220 to 138820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,800 DEBUG Processing 33/679 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,874 DEBUG Processing 120/720 atomic regions from SNP 35819 to 36420 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,983 DEBUG Processing 462/727 atomic regions from SNP 138520 to 139120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,008 DEBUG Processing 34/679 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,067 DEBUG Processing 121/720 atomic regions from SNP 36120 to 36721 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,189 DEBUG Processing 463/727 atomic regions from SNP 138820 to 139420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,225 DEBUG Processing 35/679 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,261 DEBUG Processing 122/720 atomic regions from SNP 36421 to 37022 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,400 DEBUG Processing 464/727 atomic regions from SNP 139120 to 139720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,428 DEBUG Processing 36/679 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,456 DEBUG Processing 123/720 atomic regions from SNP 36722 to 37323 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,600 DEBUG Processing 465/727 atomic regions from SNP 139420 to 140020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,622 DEBUG Processing 37/679 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,653 DEBUG Processing 124/720 atomic regions from SNP 37023 to 37624 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,795 DEBUG Processing 466/727 atomic regions from SNP 139720 to 140320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,813 DEBUG Processing 38/679 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,849 DEBUG Processing 125/720 atomic regions from SNP 37324 to 37925 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,996 DEBUG Processing 467/727 atomic regions from SNP 140020 to 140620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,018 DEBUG Processing 39/679 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,046 DEBUG Processing 126/720 atomic regions from SNP 37625 to 38226 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,196 DEBUG Processing 468/727 atomic regions from SNP 140320 to 140920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,212 DEBUG Processing 40/679 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,243 DEBUG Processing 127/720 atomic regions from SNP 37926 to 38527 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,392 DEBUG Processing 469/727 atomic regions from SNP 140620 to 141220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,403 DEBUG Processing 41/679 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,438 DEBUG Processing 128/720 atomic regions from SNP 38227 to 38828 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,586 DEBUG Processing 470/727 atomic regions from SNP 140920 to 141520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,594 DEBUG Processing 42/679 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,635 DEBUG Processing 129/720 atomic regions from SNP 38528 to 39129 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,782 DEBUG Processing 471/727 atomic regions from SNP 141220 to 141820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,786 DEBUG Processing 43/679 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,834 DEBUG Processing 130/720 atomic regions from SNP 38829 to 39430 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,980 DEBUG Processing 44/679 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,981 DEBUG Processing 472/727 atomic regions from SNP 141520 to 142120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,034 DEBUG Processing 131/720 atomic regions from SNP 39130 to 39731 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,173 DEBUG Processing 45/679 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,178 DEBUG Processing 473/727 atomic regions from SNP 141820 to 142420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,233 DEBUG Processing 132/720 atomic regions from SNP 39431 to 40032 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,365 DEBUG Processing 46/679 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,373 DEBUG Processing 474/727 atomic regions from SNP 142120 to 142720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,434 DEBUG Processing 133/720 atomic regions from SNP 39732 to 40333 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,558 DEBUG Processing 47/679 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,571 DEBUG Processing 475/727 atomic regions from SNP 142420 to 143020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,634 DEBUG Processing 134/720 atomic regions from SNP 40033 to 40634 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,750 DEBUG Processing 48/679 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,770 DEBUG Processing 476/727 atomic regions from SNP 142720 to 143320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,834 DEBUG Processing 135/720 atomic regions from SNP 40334 to 40935 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,941 DEBUG Processing 49/679 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,967 DEBUG Processing 477/727 atomic regions from SNP 143020 to 143620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,026 DEBUG Processing 136/720 atomic regions from SNP 40635 to 41236 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,135 DEBUG Processing 50/679 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,164 DEBUG Processing 478/727 atomic regions from SNP 143320 to 143920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,193 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:52:45,216 DEBUG Processing 137/720 atomic regions from SNP 40936 to 41537 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,338 DEBUG Processing 51/679 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,360 DEBUG Processing 479/727 atomic regions from SNP 143620 to 144220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,411 DEBUG Processing 138/720 atomic regions from SNP 41237 to 41838 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,542 DEBUG Processing 52/679 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,555 DEBUG Processing 480/727 atomic regions from SNP 143920 to 144520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,603 DEBUG Processing 139/720 atomic regions from SNP 41538 to 42139 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,687 DEBUG Subchromosome time: 161.20921060815454, subchromosome SNPs: 202152 2025-01-31 09:52:45,688 DEBUG Estimated BADs: [0.34, 1.37, 13.73, 1.37, 4.12, 1.37, 2.75, 1.37, 0.69, 1.37, 2.75, 8.24, 1.37, 4.12, 2.75, 1.37, 2.75, 0.46, 0.69, 0.34, 0.69, 0.46, 1.37] SNP counts: [168, 19083, 90, 2092, 3817, 14447, 9937, 3595, 6383, 12879, 1784, 825, 2001, 2637, 27879, 5701, 10497, 9897, 6599, 14704, 15599, 12281, 19425] SNP IDs counts: [168, 19083, 90, 2092, 3817, 14447, 9937, 3595, 6383, 12879, 1784, 825, 2001, 2637, 27879, 5701, 10497, 9897, 6599, 14704, 15599, 12281, 19425] Critical gap: 618282bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.13Mbp[0.71Mbp], 18.23Mbp, 18.29Mbp, 19.70Mbp, 21.71Mbp, 29.89Mbp, 35.14Mbp, 37.18Mbp, 40.89Mbp, 50.77Mbp, 51.88Mbp, 52.32Mbp, 54.15Mbp, 55.56Mbp, 71.02Mbp, 74.24Mbp, 79.89Mbp, 85.67Mbp, 89.45Mbp, 97.95Mbp, 106.70Mbp, 113.84Mbp, 124.90Mbp] 2025-01-31 09:52:45,688 DEBUG chr14 time: 161.2097177952528 s 2025-01-31 09:52:45,744 DEBUG Processing 53/679 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,752 DEBUG Processing 481/727 atomic regions from SNP 144220 to 144820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,800 DEBUG Processing 140/720 atomic regions from SNP 41839 to 42440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,813 DEBUG chr14: Fitting background model for 23 segments 2025-01-31 09:52:45,947 DEBUG Processing 482/727 atomic regions from SNP 144520 to 145120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,951 DEBUG Processing 54/679 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,998 DEBUG Processing 141/720 atomic regions from SNP 42140 to 42741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,141 DEBUG Processing 483/727 atomic regions from SNP 144820 to 145420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,166 DEBUG Processing 55/679 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,197 DEBUG Processing 142/720 atomic regions from SNP 42441 to 43042 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,334 DEBUG Processing 484/727 atomic regions from SNP 145120 to 145720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,361 DEBUG Processing 56/679 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,396 DEBUG Processing 143/720 atomic regions from SNP 42742 to 43343 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,530 DEBUG Processing 485/727 atomic regions from SNP 145420 to 146020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,558 DEBUG Processing 57/679 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,597 DEBUG Processing 144/720 atomic regions from SNP 43043 to 43644 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,725 DEBUG Processing 486/727 atomic regions from SNP 145720 to 146320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,748 DEBUG Processing 58/679 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,795 DEBUG Processing 145/720 atomic regions from SNP 43344 to 43945 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,919 DEBUG Processing 487/727 atomic regions from SNP 146020 to 146620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,948 DEBUG Processing 59/679 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,992 DEBUG Processing 146/720 atomic regions from SNP 43645 to 44246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,113 DEBUG Processing 488/727 atomic regions from SNP 146320 to 146920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,148 DEBUG Processing 60/679 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,188 DEBUG Processing 147/720 atomic regions from SNP 43946 to 44547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,308 DEBUG Processing 489/727 atomic regions from SNP 146620 to 147220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,360 DEBUG Processing 61/679 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,385 DEBUG Processing 148/720 atomic regions from SNP 44247 to 44848 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,506 DEBUG Processing 490/727 atomic regions from SNP 146920 to 147520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,578 DEBUG Processing 62/679 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,583 DEBUG Processing 149/720 atomic regions from SNP 44548 to 45149 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,701 DEBUG Processing 491/727 atomic regions from SNP 147220 to 147820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,775 DEBUG Processing 63/679 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,782 DEBUG Processing 150/720 atomic regions from SNP 44849 to 45450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,896 DEBUG Processing 492/727 atomic regions from SNP 147520 to 148120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,964 DEBUG Processing 64/679 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,977 DEBUG Processing 151/720 atomic regions from SNP 45150 to 45751 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,091 DEBUG Processing 493/727 atomic regions from SNP 147820 to 148420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,155 DEBUG Processing 65/679 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,169 DEBUG Processing 152/720 atomic regions from SNP 45451 to 46052 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,286 DEBUG Processing 494/727 atomic regions from SNP 148120 to 148720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,345 DEBUG Processing 66/679 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,362 DEBUG Processing 153/720 atomic regions from SNP 45752 to 46353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,481 DEBUG Processing 495/727 atomic regions from SNP 148420 to 149020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,536 DEBUG Processing 67/679 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,551 DEBUG Processing 154/720 atomic regions from SNP 46053 to 46654 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,677 DEBUG Processing 496/727 atomic regions from SNP 148720 to 149320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,725 DEBUG Processing 68/679 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,747 DEBUG Processing 155/720 atomic regions from SNP 46354 to 46955 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,870 DEBUG Processing 497/727 atomic regions from SNP 149020 to 149620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,914 DEBUG Processing 69/679 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,943 DEBUG Processing 156/720 atomic regions from SNP 46655 to 47256 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,063 DEBUG Processing 498/727 atomic regions from SNP 149320 to 149920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,102 DEBUG Processing 70/679 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,133 DEBUG Processing 157/720 atomic regions from SNP 46956 to 47557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,256 DEBUG Processing 499/727 atomic regions from SNP 149620 to 150220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,292 DEBUG Processing 71/679 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,323 DEBUG Processing 158/720 atomic regions from SNP 47257 to 47858 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,452 DEBUG Processing 500/727 atomic regions from SNP 149920 to 150520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,485 DEBUG Processing 72/679 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,520 DEBUG Processing 159/720 atomic regions from SNP 47558 to 48159 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,650 DEBUG Processing 501/727 atomic regions from SNP 150220 to 150820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,679 DEBUG Processing 73/679 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,715 DEBUG Processing 160/720 atomic regions from SNP 47859 to 48460 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,848 DEBUG Processing 502/727 atomic regions from SNP 150520 to 151120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,874 DEBUG Processing 74/679 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,908 DEBUG Processing 161/720 atomic regions from SNP 48160 to 48761 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,048 DEBUG Processing 503/727 atomic regions from SNP 150820 to 151420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,071 DEBUG Processing 75/679 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,102 DEBUG Processing 162/720 atomic regions from SNP 48461 to 49062 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,246 DEBUG Processing 504/727 atomic regions from SNP 151120 to 151720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,264 DEBUG Processing 76/679 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,296 DEBUG Processing 163/720 atomic regions from SNP 48762 to 49363 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,439 DEBUG Processing 505/727 atomic regions from SNP 151420 to 152020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,453 DEBUG Processing 77/679 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,489 DEBUG Processing 164/720 atomic regions from SNP 49063 to 49664 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,633 DEBUG Processing 506/727 atomic regions from SNP 151720 to 152320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,642 DEBUG Processing 78/679 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,686 DEBUG Processing 165/720 atomic regions from SNP 49364 to 49965 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,829 DEBUG Processing 507/727 atomic regions from SNP 152020 to 152620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,831 DEBUG Processing 79/679 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,887 DEBUG Processing 166/720 atomic regions from SNP 49665 to 50266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,019 DEBUG Processing 80/679 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,023 DEBUG Processing 508/727 atomic regions from SNP 152320 to 152920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,085 DEBUG Processing 167/720 atomic regions from SNP 49966 to 50567 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,211 DEBUG Processing 81/679 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,217 DEBUG Processing 509/727 atomic regions from SNP 152620 to 153220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,299 DEBUG Processing 168/720 atomic regions from SNP 50267 to 50868 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,404 DEBUG Processing 82/679 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,412 DEBUG Processing 510/727 atomic regions from SNP 152920 to 153520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,512 DEBUG Processing 169/720 atomic regions from SNP 50568 to 51169 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,598 DEBUG Processing 83/679 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,605 DEBUG Processing 511/727 atomic regions from SNP 153220 to 153820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,712 DEBUG Processing 170/720 atomic regions from SNP 50869 to 51470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,800 DEBUG Processing 84/679 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,801 DEBUG Processing 512/727 atomic regions from SNP 153520 to 154120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,937 DEBUG Processing 171/720 atomic regions from SNP 51170 to 51771 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,993 DEBUG Processing 85/679 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,996 DEBUG Processing 513/727 atomic regions from SNP 153820 to 154420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,142 DEBUG Processing 172/720 atomic regions from SNP 51471 to 52072 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,194 DEBUG Processing 86/679 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,201 DEBUG Processing 514/727 atomic regions from SNP 154120 to 154720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,333 DEBUG Processing 173/720 atomic regions from SNP 51772 to 52373 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,393 DEBUG Processing 87/679 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,405 DEBUG Processing 515/727 atomic regions from SNP 154420 to 155020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,522 DEBUG Processing 174/720 atomic regions from SNP 52073 to 52674 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,586 DEBUG Processing 88/679 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,607 DEBUG Processing 516/727 atomic regions from SNP 154720 to 155320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,712 DEBUG Processing 175/720 atomic regions from SNP 52374 to 52975 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,777 DEBUG Processing 89/679 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,803 DEBUG Processing 517/727 atomic regions from SNP 155020 to 155620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,903 DEBUG Processing 176/720 atomic regions from SNP 52675 to 53276 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,970 DEBUG Processing 90/679 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,003 DEBUG Processing 518/727 atomic regions from SNP 155320 to 155920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,094 DEBUG Processing 177/720 atomic regions from SNP 52976 to 53577 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,159 DEBUG Processing 91/679 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,197 DEBUG Processing 519/727 atomic regions from SNP 155620 to 156220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,285 DEBUG Processing 178/720 atomic regions from SNP 53277 to 53878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,348 DEBUG Processing 92/679 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,392 DEBUG Processing 520/727 atomic regions from SNP 155920 to 156520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,477 DEBUG Processing 179/720 atomic regions from SNP 53578 to 54179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,538 DEBUG Processing 93/679 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,603 DEBUG Processing 521/727 atomic regions from SNP 156220 to 156820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,670 DEBUG Processing 180/720 atomic regions from SNP 53879 to 54480 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,727 DEBUG Processing 94/679 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,815 DEBUG Processing 522/727 atomic regions from SNP 156520 to 157120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,863 DEBUG Processing 181/720 atomic regions from SNP 54180 to 54781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,915 DEBUG Processing 95/679 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,011 DEBUG Processing 523/727 atomic regions from SNP 156820 to 157420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,057 DEBUG Processing 182/720 atomic regions from SNP 54481 to 55082 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,103 DEBUG Processing 96/679 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,204 DEBUG Processing 524/727 atomic regions from SNP 157120 to 157720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,246 DEBUG Processing 183/720 atomic regions from SNP 54782 to 55383 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,290 DEBUG Processing 97/679 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,398 DEBUG Processing 525/727 atomic regions from SNP 157420 to 158020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,437 DEBUG Processing 184/720 atomic regions from SNP 55083 to 55684 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,478 DEBUG Processing 98/679 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,594 DEBUG Processing 526/727 atomic regions from SNP 157720 to 158320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,630 DEBUG Processing 185/720 atomic regions from SNP 55384 to 55985 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,669 DEBUG Processing 99/679 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,786 DEBUG Processing 527/727 atomic regions from SNP 158020 to 158620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,819 DEBUG Processing 186/720 atomic regions from SNP 55685 to 56286 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,858 DEBUG Processing 100/679 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,980 DEBUG Processing 528/727 atomic regions from SNP 158320 to 158920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,009 DEBUG Processing 187/720 atomic regions from SNP 55986 to 56587 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,048 DEBUG Processing 101/679 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,174 DEBUG Processing 529/727 atomic regions from SNP 158620 to 159220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,198 DEBUG Processing 188/720 atomic regions from SNP 56287 to 56888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,237 DEBUG Processing 102/679 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,370 DEBUG Processing 530/727 atomic regions from SNP 158920 to 159520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,386 DEBUG Processing 189/720 atomic regions from SNP 56588 to 57189 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,435 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:52:55,443 DEBUG Processing 103/679 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,566 DEBUG Processing 531/727 atomic regions from SNP 159220 to 159820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,577 DEBUG Processing 190/720 atomic regions from SNP 56889 to 57490 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,664 DEBUG Processing 104/679 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,760 DEBUG Processing 532/727 atomic regions from SNP 159520 to 160120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,769 DEBUG Processing 191/720 atomic regions from SNP 57190 to 57791 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,878 DEBUG Processing 105/679 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,955 DEBUG Processing 533/727 atomic regions from SNP 159820 to 160420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,963 DEBUG Processing 192/720 atomic regions from SNP 57491 to 58092 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,079 DEBUG Processing 106/679 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,149 DEBUG Processing 534/727 atomic regions from SNP 160120 to 160720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,159 DEBUG Processing 193/720 atomic regions from SNP 57792 to 58393 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,299 DEBUG Processing 107/679 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,346 DEBUG Processing 535/727 atomic regions from SNP 160420 to 161020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,355 DEBUG Processing 194/720 atomic regions from SNP 58093 to 58694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,524 DEBUG Processing 108/679 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,544 DEBUG Processing 536/727 atomic regions from SNP 160720 to 161320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,551 DEBUG Processing 195/720 atomic regions from SNP 58394 to 58995 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,737 DEBUG Processing 109/679 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,744 DEBUG Processing 196/720 atomic regions from SNP 58695 to 59296 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,745 DEBUG Processing 537/727 atomic regions from SNP 161020 to 161620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,927 DEBUG Processing 110/679 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,942 DEBUG Processing 197/720 atomic regions from SNP 58996 to 59597 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,942 DEBUG Processing 538/727 atomic regions from SNP 161320 to 161920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,116 DEBUG Processing 111/679 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,138 DEBUG Processing 539/727 atomic regions from SNP 161620 to 162220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,140 DEBUG Processing 198/720 atomic regions from SNP 59297 to 59898 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,307 DEBUG Processing 112/679 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,310 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:52:57,311 DEBUG chr12: Signal quantile: 0.993. signal threshold: 13. Best RMSEA: 0.017 2025-01-31 09:52:57,332 DEBUG Processing 540/727 atomic regions from SNP 161920 to 162520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,333 DEBUG Processing 199/720 atomic regions from SNP 59598 to 60199 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,498 DEBUG Processing 113/679 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,522 DEBUG Processing 200/720 atomic regions from SNP 59899 to 60500 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,527 DEBUG Processing 541/727 atomic regions from SNP 162220 to 162820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,698 DEBUG Processing 114/679 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,714 DEBUG Processing 201/720 atomic regions from SNP 60200 to 60801 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,719 DEBUG Processing 542/727 atomic regions from SNP 162520 to 163120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,905 DEBUG Processing 202/720 atomic regions from SNP 60501 to 61102 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,914 DEBUG Processing 115/679 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,914 DEBUG Processing 543/727 atomic regions from SNP 162820 to 163420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,098 DEBUG Processing 203/720 atomic regions from SNP 60802 to 61403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,109 DEBUG Processing 544/727 atomic regions from SNP 163120 to 163720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,130 DEBUG Processing 116/679 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,296 DEBUG Processing 204/720 atomic regions from SNP 61103 to 61704 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,308 DEBUG Processing 545/727 atomic regions from SNP 163420 to 164020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,354 DEBUG Processing 117/679 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,491 DEBUG Processing 205/720 atomic regions from SNP 61404 to 62005 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,504 DEBUG Processing 546/727 atomic regions from SNP 163720 to 164320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,559 DEBUG Processing 118/679 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,686 DEBUG Processing 206/720 atomic regions from SNP 61705 to 62306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,708 DEBUG Processing 547/727 atomic regions from SNP 164020 to 164620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,755 DEBUG Processing 119/679 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,880 DEBUG Processing 207/720 atomic regions from SNP 62006 to 62607 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,900 DEBUG Processing 548/727 atomic regions from SNP 164320 to 164920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,965 DEBUG Processing 120/679 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,077 DEBUG Processing 208/720 atomic regions from SNP 62307 to 62908 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,092 DEBUG Processing 549/727 atomic regions from SNP 164620 to 165220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,176 DEBUG Processing 121/679 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,274 DEBUG Processing 209/720 atomic regions from SNP 62608 to 63209 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,287 DEBUG Processing 550/727 atomic regions from SNP 164920 to 165520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,326 DEBUG chr12 total SNP count: 200587 2025-01-31 09:52:59,327 DEBUG chr12 length: 120129022 2025-01-31 09:52:59,327 DEBUG ----------------------------------------- 2025-01-31 09:52:59,327 INFO Processing SNPs in chr12 2025-01-31 09:52:59,389 DEBUG Processing 122/679 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,471 DEBUG Processing 210/720 atomic regions from SNP 62909 to 63510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,480 DEBUG Processing 551/727 atomic regions from SNP 165220 to 165820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,518 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 200587)] 2025-01-31 09:52:59,606 DEBUG Processing 123/679 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,650 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:59,669 DEBUG Processing 211/720 atomic regions from SNP 63210 to 63811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,690 DEBUG Processing 552/727 atomic regions from SNP 165520 to 166120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,821 DEBUG Processing 124/679 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,865 DEBUG Processing 212/720 atomic regions from SNP 63511 to 64112 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,903 DEBUG Processing 553/727 atomic regions from SNP 165820 to 166420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,030 DEBUG Processing 125/679 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,066 DEBUG Processing 213/720 atomic regions from SNP 63812 to 64413 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,095 DEBUG Processing 554/727 atomic regions from SNP 166120 to 166720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,220 DEBUG Processing 126/679 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,268 DEBUG Processing 214/720 atomic regions from SNP 64113 to 64714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,289 DEBUG Processing 555/727 atomic regions from SNP 166420 to 167020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,406 DEBUG Processing 127/679 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,467 DEBUG Processing 215/720 atomic regions from SNP 64414 to 65015 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,484 DEBUG Processing 556/727 atomic regions from SNP 166720 to 167320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,593 DEBUG Processing 128/679 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,669 DEBUG Processing 216/720 atomic regions from SNP 64715 to 65316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,692 DEBUG Processing 557/727 atomic regions from SNP 167020 to 167620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,778 DEBUG Processing 129/679 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,875 DEBUG Processing 217/720 atomic regions from SNP 65016 to 65617 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,899 DEBUG Processing 558/727 atomic regions from SNP 167320 to 167920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,967 DEBUG Processing 130/679 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,080 DEBUG Processing 218/720 atomic regions from SNP 65317 to 65918 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,100 DEBUG Processing 559/727 atomic regions from SNP 167620 to 168220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,156 DEBUG Processing 131/679 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,282 DEBUG Processing 219/720 atomic regions from SNP 65618 to 66219 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,320 DEBUG Processing 560/727 atomic regions from SNP 167920 to 168520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,347 DEBUG Processing 132/679 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,485 DEBUG Processing 220/720 atomic regions from SNP 65919 to 66520 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,523 DEBUG Processing 561/727 atomic regions from SNP 168220 to 168820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,538 DEBUG Processing 133/679 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,682 DEBUG Processing 221/720 atomic regions from SNP 66220 to 66821 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,720 DEBUG Processing 562/727 atomic regions from SNP 168520 to 169120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,729 DEBUG Processing 134/679 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,873 DEBUG Processing 222/720 atomic regions from SNP 66521 to 67122 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,913 DEBUG Processing 563/727 atomic regions from SNP 168820 to 169420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,920 DEBUG Processing 135/679 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,062 DEBUG Processing 223/720 atomic regions from SNP 66822 to 67423 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,108 DEBUG Processing 564/727 atomic regions from SNP 169120 to 169720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,110 DEBUG Processing 136/679 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,255 DEBUG Processing 224/720 atomic regions from SNP 67123 to 67724 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,301 DEBUG Processing 137/679 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,302 DEBUG Processing 565/727 atomic regions from SNP 169420 to 170020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,451 DEBUG Processing 225/720 atomic regions from SNP 67424 to 68025 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,494 DEBUG Processing 566/727 atomic regions from SNP 169720 to 170320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,495 DEBUG Processing 138/679 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,648 DEBUG Processing 226/720 atomic regions from SNP 67725 to 68326 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,687 DEBUG Processing 139/679 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,688 DEBUG Processing 567/727 atomic regions from SNP 170020 to 170620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,846 DEBUG Processing 227/720 atomic regions from SNP 68026 to 68627 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,879 DEBUG Processing 140/679 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,881 DEBUG Processing 568/727 atomic regions from SNP 170320 to 170920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,046 DEBUG Processing 228/720 atomic regions from SNP 68327 to 68928 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,070 DEBUG Processing 141/679 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,075 DEBUG Processing 569/727 atomic regions from SNP 170620 to 171220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,244 DEBUG Processing 229/720 atomic regions from SNP 68628 to 69229 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,257 DEBUG Processing 142/679 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,269 DEBUG Processing 570/727 atomic regions from SNP 170920 to 171520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,442 DEBUG Processing 230/720 atomic regions from SNP 68929 to 69530 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,446 DEBUG Processing 143/679 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,467 DEBUG Processing 571/727 atomic regions from SNP 171220 to 171820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,633 DEBUG Processing 144/679 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,637 DEBUG Processing 231/720 atomic regions from SNP 69230 to 69831 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,660 DEBUG Processing 572/727 atomic regions from SNP 171520 to 172120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,824 DEBUG Processing 145/679 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,831 DEBUG Processing 232/720 atomic regions from SNP 69531 to 70132 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,854 DEBUG Processing 573/727 atomic regions from SNP 171820 to 172420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,023 DEBUG Processing 233/720 atomic regions from SNP 69832 to 70433 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,027 DEBUG Processing 146/679 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,050 DEBUG Processing 574/727 atomic regions from SNP 172120 to 172720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,214 DEBUG Processing 147/679 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,214 DEBUG Processing 234/720 atomic regions from SNP 70133 to 70734 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,255 DEBUG Processing 575/727 atomic regions from SNP 172420 to 173020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,399 DEBUG Processing 148/679 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,406 DEBUG Processing 235/720 atomic regions from SNP 70434 to 71035 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,453 DEBUG Processing 576/727 atomic regions from SNP 172720 to 173320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,584 DEBUG Processing 149/679 atomic regions from SNP 44548 to 45149 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,596 DEBUG Processing 236/720 atomic regions from SNP 70735 to 71336 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,656 DEBUG Processing 577/727 atomic regions from SNP 173020 to 173620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,768 DEBUG Processing 150/679 atomic regions from SNP 44849 to 45450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,785 DEBUG Processing 237/720 atomic regions from SNP 71036 to 71637 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,853 DEBUG Processing 578/727 atomic regions from SNP 173320 to 173920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,953 DEBUG Processing 151/679 atomic regions from SNP 45150 to 45751 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,974 DEBUG Processing 238/720 atomic regions from SNP 71337 to 71938 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,046 DEBUG Processing 579/727 atomic regions from SNP 173620 to 174220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,148 DEBUG Processing 152/679 atomic regions from SNP 45451 to 46052 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,166 DEBUG Processing 239/720 atomic regions from SNP 71638 to 72239 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,238 DEBUG Processing 580/727 atomic regions from SNP 173920 to 174520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,343 DEBUG Processing 153/679 atomic regions from SNP 45752 to 46353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,354 DEBUG Processing 240/720 atomic regions from SNP 71939 to 72540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,429 DEBUG Processing 581/727 atomic regions from SNP 174220 to 174820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,543 DEBUG Processing 241/720 atomic regions from SNP 72240 to 72841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,549 DEBUG Processing 154/679 atomic regions from SNP 46053 to 46654 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,624 DEBUG Processing 582/727 atomic regions from SNP 174520 to 175120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,734 DEBUG Processing 242/720 atomic regions from SNP 72541 to 73142 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,761 DEBUG Processing 155/679 atomic regions from SNP 46354 to 46955 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,834 DEBUG Processing 583/727 atomic regions from SNP 174820 to 175420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,923 DEBUG Processing 243/720 atomic regions from SNP 72842 to 73443 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,960 DEBUG Processing 156/679 atomic regions from SNP 46655 to 47256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,050 DEBUG Processing 584/727 atomic regions from SNP 175120 to 175720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,126 DEBUG Processing 244/720 atomic regions from SNP 73143 to 73744 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,162 DEBUG Processing 157/679 atomic regions from SNP 46956 to 47557 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,245 DEBUG Processing 585/727 atomic regions from SNP 175420 to 176020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,322 DEBUG Processing 245/720 atomic regions from SNP 73444 to 74045 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,351 DEBUG Processing 158/679 atomic regions from SNP 47257 to 47858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,448 DEBUG Processing 586/727 atomic regions from SNP 175720 to 176320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,512 DEBUG Processing 246/720 atomic regions from SNP 73745 to 74346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,541 DEBUG Processing 159/679 atomic regions from SNP 47558 to 48159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,659 DEBUG Processing 587/727 atomic regions from SNP 176020 to 176620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,703 DEBUG Processing 247/720 atomic regions from SNP 74046 to 74647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,749 DEBUG Processing 160/679 atomic regions from SNP 47859 to 48460 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,853 DEBUG Processing 588/727 atomic regions from SNP 176320 to 176920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,895 DEBUG Processing 248/720 atomic regions from SNP 74347 to 74948 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,970 DEBUG Processing 161/679 atomic regions from SNP 48160 to 48761 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,049 DEBUG Processing 589/727 atomic regions from SNP 176620 to 177220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,092 DEBUG Processing 249/720 atomic regions from SNP 74648 to 75249 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,172 DEBUG Processing 162/679 atomic regions from SNP 48461 to 49062 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,243 DEBUG Processing 590/727 atomic regions from SNP 176920 to 177520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,286 DEBUG Processing 250/720 atomic regions from SNP 74949 to 75550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,363 DEBUG Processing 163/679 atomic regions from SNP 48762 to 49363 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,437 DEBUG Processing 591/727 atomic regions from SNP 177220 to 177820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,479 DEBUG Processing 251/720 atomic regions from SNP 75250 to 75851 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,552 DEBUG Processing 164/679 atomic regions from SNP 49063 to 49664 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,630 DEBUG Processing 592/727 atomic regions from SNP 177520 to 178120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,674 DEBUG Processing 252/720 atomic regions from SNP 75551 to 76152 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,730 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:53:07,731 DEBUG chr15: Signal quantile: 0.989. signal threshold: 15. Best RMSEA: 0.011 2025-01-31 09:53:07,756 DEBUG Processing 165/679 atomic regions from SNP 49364 to 49965 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,821 DEBUG Processing 593/727 atomic regions from SNP 177820 to 178420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,869 DEBUG Processing 253/720 atomic regions from SNP 75852 to 76453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,958 DEBUG Processing 166/679 atomic regions from SNP 49665 to 50266 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,017 DEBUG Processing 594/727 atomic regions from SNP 178120 to 178720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,065 DEBUG Processing 254/720 atomic regions from SNP 76153 to 76754 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,150 DEBUG Processing 167/679 atomic regions from SNP 49966 to 50567 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,211 DEBUG Processing 595/727 atomic regions from SNP 178420 to 179020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,263 DEBUG Processing 255/720 atomic regions from SNP 76454 to 77055 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,341 DEBUG Processing 168/679 atomic regions from SNP 50267 to 50868 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,405 DEBUG Processing 596/727 atomic regions from SNP 178720 to 179320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,456 DEBUG Processing 256/720 atomic regions from SNP 76755 to 77356 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,530 DEBUG Processing 169/679 atomic regions from SNP 50568 to 51169 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,605 DEBUG Processing 597/727 atomic regions from SNP 179020 to 179620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,651 DEBUG Processing 257/720 atomic regions from SNP 77056 to 77657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,720 DEBUG Processing 170/679 atomic regions from SNP 50869 to 51470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,802 DEBUG Processing 598/727 atomic regions from SNP 179320 to 179920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,847 DEBUG Processing 258/720 atomic regions from SNP 77357 to 77958 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,911 DEBUG Processing 171/679 atomic regions from SNP 51170 to 51771 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,001 DEBUG Processing 599/727 atomic regions from SNP 179620 to 180220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,038 DEBUG Processing 259/720 atomic regions from SNP 77658 to 78259 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,111 DEBUG Processing 172/679 atomic regions from SNP 51471 to 52072 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,211 DEBUG Processing 600/727 atomic regions from SNP 179920 to 180520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,230 DEBUG Processing 260/720 atomic regions from SNP 77959 to 78560 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,315 DEBUG Processing 173/679 atomic regions from SNP 51772 to 52373 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,401 DEBUG chr15 total SNP count: 180424 2025-01-31 09:53:09,401 DEBUG chr15 length: 104043685 2025-01-31 09:53:09,401 DEBUG ----------------------------------------- 2025-01-31 09:53:09,401 INFO Processing SNPs in chr15 2025-01-31 09:53:09,422 DEBUG Processing 261/720 atomic regions from SNP 78260 to 78861 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,424 DEBUG Processing 601/727 atomic regions from SNP 180220 to 180820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,501 DEBUG Processing 174/679 atomic regions from SNP 52073 to 52674 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,574 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 180424)] 2025-01-31 09:53:09,613 DEBUG Processing 262/720 atomic regions from SNP 78561 to 79162 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,617 DEBUG Processing 602/727 atomic regions from SNP 180520 to 181120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,688 DEBUG Processing 175/679 atomic regions from SNP 52374 to 52975 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,692 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:09,807 DEBUG Processing 263/720 atomic regions from SNP 78862 to 79463 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,812 DEBUG Processing 603/727 atomic regions from SNP 180820 to 181420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,873 DEBUG Processing 176/679 atomic regions from SNP 52675 to 53276 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,004 DEBUG Processing 264/720 atomic regions from SNP 79163 to 79764 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,016 DEBUG Processing 604/727 atomic regions from SNP 181120 to 181720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,083 DEBUG Processing 177/679 atomic regions from SNP 52976 to 53577 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,209 DEBUG Processing 265/720 atomic regions from SNP 79464 to 80065 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,216 DEBUG Processing 605/727 atomic regions from SNP 181420 to 182020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,307 DEBUG Processing 178/679 atomic regions from SNP 53277 to 53878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,399 DEBUG Processing 266/720 atomic regions from SNP 79765 to 80366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,419 DEBUG Processing 606/727 atomic regions from SNP 181720 to 182320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,523 DEBUG Processing 179/679 atomic regions from SNP 53578 to 54179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,589 DEBUG Processing 267/720 atomic regions from SNP 80066 to 80667 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,610 DEBUG Processing 607/727 atomic regions from SNP 182020 to 182620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,739 DEBUG Processing 180/679 atomic regions from SNP 53879 to 54480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,788 DEBUG Processing 268/720 atomic regions from SNP 80367 to 80968 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,818 DEBUG Processing 608/727 atomic regions from SNP 182320 to 182920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,926 DEBUG Processing 181/679 atomic regions from SNP 54180 to 54781 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,998 DEBUG Processing 269/720 atomic regions from SNP 80668 to 81269 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,021 DEBUG Processing 609/727 atomic regions from SNP 182620 to 183220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,127 DEBUG Processing 182/679 atomic regions from SNP 54481 to 55082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,220 DEBUG Processing 610/727 atomic regions from SNP 182920 to 183520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,232 DEBUG Processing 270/720 atomic regions from SNP 80969 to 81570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,320 DEBUG Processing 183/679 atomic regions from SNP 54782 to 55383 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,422 DEBUG Processing 611/727 atomic regions from SNP 183220 to 183820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,426 DEBUG Processing 271/720 atomic regions from SNP 81270 to 81871 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,504 DEBUG Processing 184/679 atomic regions from SNP 55083 to 55684 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,614 DEBUG Processing 612/727 atomic regions from SNP 183520 to 184120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,616 DEBUG Processing 272/720 atomic regions from SNP 81571 to 82172 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,688 DEBUG Processing 185/679 atomic regions from SNP 55384 to 55985 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,807 DEBUG Processing 273/720 atomic regions from SNP 81872 to 82473 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,810 DEBUG Processing 613/727 atomic regions from SNP 183820 to 184420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,874 DEBUG Processing 186/679 atomic regions from SNP 55685 to 56286 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,004 DEBUG Processing 614/727 atomic regions from SNP 184120 to 184720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,004 DEBUG Processing 274/720 atomic regions from SNP 82173 to 82774 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,068 DEBUG Processing 187/679 atomic regions from SNP 55986 to 56587 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,198 DEBUG Processing 615/727 atomic regions from SNP 184420 to 185020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,207 DEBUG Processing 275/720 atomic regions from SNP 82474 to 83075 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,282 DEBUG Processing 188/679 atomic regions from SNP 56287 to 56888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,394 DEBUG Processing 616/727 atomic regions from SNP 184720 to 185320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,404 DEBUG Processing 276/720 atomic regions from SNP 82775 to 83376 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,484 DEBUG Processing 189/679 atomic regions from SNP 56588 to 57188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,586 DEBUG Processing 617/727 atomic regions from SNP 185020 to 185620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,614 DEBUG Processing 277/720 atomic regions from SNP 83076 to 83677 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,635 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:53:12,691 DEBUG Processing 190/679 atomic regions from SNP 56888 to 57488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,795 DEBUG Processing 618/727 atomic regions from SNP 185320 to 185920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,835 DEBUG Processing 278/720 atomic regions from SNP 83377 to 83978 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,891 DEBUG Processing 191/679 atomic regions from SNP 57188 to 57788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,036 DEBUG Processing 619/727 atomic regions from SNP 185620 to 186220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,048 DEBUG Processing 279/720 atomic regions from SNP 83678 to 84279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,081 DEBUG Processing 192/679 atomic regions from SNP 57488 to 58088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,237 DEBUG Processing 280/720 atomic regions from SNP 83979 to 84580 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,264 DEBUG Processing 620/727 atomic regions from SNP 185920 to 186520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,267 DEBUG Processing 193/679 atomic regions from SNP 57788 to 58388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,425 DEBUG Processing 281/720 atomic regions from SNP 84280 to 84881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,456 DEBUG Processing 194/679 atomic regions from SNP 58088 to 58688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,467 DEBUG Processing 621/727 atomic regions from SNP 186220 to 186820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,615 DEBUG Processing 282/720 atomic regions from SNP 84581 to 85182 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,644 DEBUG Processing 195/679 atomic regions from SNP 58388 to 58988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,668 DEBUG Processing 622/727 atomic regions from SNP 186520 to 187120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,803 DEBUG Processing 283/720 atomic regions from SNP 84882 to 85483 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,829 DEBUG Processing 196/679 atomic regions from SNP 58688 to 59288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,881 DEBUG Processing 623/727 atomic regions from SNP 186820 to 187420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,994 DEBUG Processing 284/720 atomic regions from SNP 85183 to 85784 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,016 DEBUG Processing 197/679 atomic regions from SNP 58988 to 59588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,073 DEBUG Processing 624/727 atomic regions from SNP 187120 to 187720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,191 DEBUG Processing 285/720 atomic regions from SNP 85484 to 86085 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,201 DEBUG Processing 198/679 atomic regions from SNP 59288 to 59888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,285 DEBUG Processing 625/727 atomic regions from SNP 187420 to 188020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,388 DEBUG Processing 199/679 atomic regions from SNP 59588 to 60188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,410 DEBUG Processing 286/720 atomic regions from SNP 85785 to 86386 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,508 DEBUG Processing 626/727 atomic regions from SNP 187720 to 188320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,591 DEBUG Processing 200/679 atomic regions from SNP 59888 to 60488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,622 DEBUG Processing 287/720 atomic regions from SNP 86086 to 86687 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,737 DEBUG Processing 627/727 atomic regions from SNP 188020 to 188620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,815 DEBUG Processing 201/679 atomic regions from SNP 60188 to 60788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,834 DEBUG Processing 288/720 atomic regions from SNP 86387 to 86988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,957 DEBUG Processing 628/727 atomic regions from SNP 188320 to 188920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,023 DEBUG Processing 202/679 atomic regions from SNP 60488 to 61088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,036 DEBUG Processing 289/720 atomic regions from SNP 86688 to 87289 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,183 DEBUG Processing 629/727 atomic regions from SNP 188620 to 189220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,215 DEBUG Processing 203/679 atomic regions from SNP 60788 to 61388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,244 DEBUG Processing 290/720 atomic regions from SNP 86989 to 87590 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,408 DEBUG Processing 204/679 atomic regions from SNP 61088 to 61688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,413 DEBUG Processing 630/727 atomic regions from SNP 188920 to 189520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,454 DEBUG Processing 291/720 atomic regions from SNP 87290 to 87891 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,609 DEBUG Processing 205/679 atomic regions from SNP 61388 to 61988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,637 DEBUG Processing 631/727 atomic regions from SNP 189220 to 189820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,645 DEBUG Processing 292/720 atomic regions from SNP 87591 to 88192 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,820 DEBUG Processing 206/679 atomic regions from SNP 61688 to 62288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,836 DEBUG Processing 293/720 atomic regions from SNP 87892 to 88493 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,862 DEBUG Processing 632/727 atomic regions from SNP 189520 to 190120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,006 DEBUG Processing 207/679 atomic regions from SNP 61988 to 62588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,025 DEBUG Processing 294/720 atomic regions from SNP 88193 to 88794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,088 DEBUG Processing 633/727 atomic regions from SNP 189820 to 190420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,195 DEBUG Processing 208/679 atomic regions from SNP 62288 to 62888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,215 DEBUG Processing 295/720 atomic regions from SNP 88494 to 89094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,312 DEBUG Processing 634/727 atomic regions from SNP 190120 to 190720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,383 DEBUG Processing 209/679 atomic regions from SNP 62588 to 63188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,407 DEBUG Processing 296/720 atomic regions from SNP 88794 to 89394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,535 DEBUG Processing 635/727 atomic regions from SNP 190420 to 191020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,572 DEBUG Processing 210/679 atomic regions from SNP 62888 to 63488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,613 DEBUG Processing 297/720 atomic regions from SNP 89094 to 89694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,761 DEBUG Processing 636/727 atomic regions from SNP 190720 to 191320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,763 DEBUG Processing 211/679 atomic regions from SNP 63188 to 63788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,821 DEBUG Processing 298/720 atomic regions from SNP 89394 to 89994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,950 DEBUG Processing 212/679 atomic regions from SNP 63488 to 64088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,959 DEBUG Processing 637/727 atomic regions from SNP 191020 to 191620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,024 DEBUG Processing 299/720 atomic regions from SNP 89694 to 90294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,138 DEBUG Processing 213/679 atomic regions from SNP 63788 to 64388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,149 DEBUG Processing 638/727 atomic regions from SNP 191320 to 191920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,217 DEBUG Processing 300/720 atomic regions from SNP 89994 to 90594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,324 DEBUG Processing 214/679 atomic regions from SNP 64088 to 64688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,341 DEBUG Processing 639/727 atomic regions from SNP 191620 to 192220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,406 DEBUG Processing 301/720 atomic regions from SNP 90294 to 90894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,510 DEBUG Processing 215/679 atomic regions from SNP 64388 to 64988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,541 DEBUG Processing 640/727 atomic regions from SNP 191920 to 192520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,594 DEBUG Processing 302/720 atomic regions from SNP 90594 to 91194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,697 DEBUG Processing 216/679 atomic regions from SNP 64688 to 65288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,742 DEBUG Processing 641/727 atomic regions from SNP 192220 to 192820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,784 DEBUG Processing 303/720 atomic regions from SNP 90894 to 91494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,883 DEBUG Processing 217/679 atomic regions from SNP 64988 to 65588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,959 DEBUG Processing 642/727 atomic regions from SNP 192520 to 193120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,973 DEBUG Processing 304/720 atomic regions from SNP 91194 to 91794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,067 DEBUG Processing 218/679 atomic regions from SNP 65288 to 65888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,162 DEBUG Processing 305/720 atomic regions from SNP 91494 to 92094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,171 DEBUG Processing 643/727 atomic regions from SNP 192820 to 193420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,252 DEBUG Processing 219/679 atomic regions from SNP 65588 to 66188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,369 DEBUG Processing 306/720 atomic regions from SNP 91794 to 92394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,386 DEBUG Processing 644/727 atomic regions from SNP 193120 to 193720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,461 DEBUG Processing 220/679 atomic regions from SNP 65888 to 66488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,579 DEBUG Processing 307/720 atomic regions from SNP 92094 to 92694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,606 DEBUG Processing 645/727 atomic regions from SNP 193420 to 194020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,660 DEBUG Processing 221/679 atomic regions from SNP 66188 to 66788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,770 DEBUG Processing 308/720 atomic regions from SNP 92394 to 92994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,828 DEBUG Processing 646/727 atomic regions from SNP 193720 to 194320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,869 DEBUG Processing 222/679 atomic regions from SNP 66488 to 67088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,969 DEBUG Processing 309/720 atomic regions from SNP 92694 to 93294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,036 DEBUG Processing 647/727 atomic regions from SNP 194020 to 194620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,060 DEBUG Processing 223/679 atomic regions from SNP 66788 to 67388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,187 DEBUG Processing 310/720 atomic regions from SNP 92994 to 93594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,248 DEBUG Processing 648/727 atomic regions from SNP 194320 to 194920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,248 DEBUG Processing 224/679 atomic regions from SNP 67088 to 67688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,377 DEBUG Processing 311/720 atomic regions from SNP 93294 to 93894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,435 DEBUG Processing 225/679 atomic regions from SNP 67388 to 67988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,449 DEBUG Processing 649/727 atomic regions from SNP 194620 to 195220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,566 DEBUG Processing 312/720 atomic regions from SNP 93594 to 94194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,621 DEBUG Processing 226/679 atomic regions from SNP 67688 to 68288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,642 DEBUG Processing 650/727 atomic regions from SNP 194920 to 195520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,755 DEBUG Processing 313/720 atomic regions from SNP 93894 to 94494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,811 DEBUG Processing 227/679 atomic regions from SNP 67988 to 68588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,834 DEBUG Processing 651/727 atomic regions from SNP 195220 to 195820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,944 DEBUG Processing 314/720 atomic regions from SNP 94194 to 94794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,000 DEBUG Processing 228/679 atomic regions from SNP 68288 to 68888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,027 DEBUG Processing 652/727 atomic regions from SNP 195520 to 196120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,138 DEBUG Processing 315/720 atomic regions from SNP 94494 to 95094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,188 DEBUG Processing 229/679 atomic regions from SNP 68588 to 69188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,222 DEBUG Processing 653/727 atomic regions from SNP 195820 to 196420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,335 DEBUG Processing 316/720 atomic regions from SNP 94794 to 95394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,375 DEBUG Processing 230/679 atomic regions from SNP 68888 to 69488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,414 DEBUG Processing 654/727 atomic regions from SNP 196120 to 196720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,530 DEBUG Processing 317/720 atomic regions from SNP 95094 to 95694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,564 DEBUG Processing 231/679 atomic regions from SNP 69188 to 69788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,607 DEBUG Processing 655/727 atomic regions from SNP 196420 to 197020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,724 DEBUG Processing 318/720 atomic regions from SNP 95394 to 95994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,750 DEBUG Processing 232/679 atomic regions from SNP 69488 to 70088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,801 DEBUG Processing 656/727 atomic regions from SNP 196720 to 197320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,920 DEBUG Processing 319/720 atomic regions from SNP 95694 to 96294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,941 DEBUG Processing 233/679 atomic regions from SNP 69788 to 70388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,996 DEBUG Processing 657/727 atomic regions from SNP 197020 to 197620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,113 DEBUG Processing 320/720 atomic regions from SNP 95994 to 96594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,140 DEBUG Processing 234/679 atomic regions from SNP 70088 to 70688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,192 DEBUG Processing 658/727 atomic regions from SNP 197320 to 197920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,304 DEBUG Processing 321/720 atomic regions from SNP 96294 to 96894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,336 DEBUG Processing 235/679 atomic regions from SNP 70388 to 70988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,386 DEBUG Processing 659/727 atomic regions from SNP 197620 to 198220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,494 DEBUG Processing 322/720 atomic regions from SNP 96594 to 97194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,548 DEBUG Processing 236/679 atomic regions from SNP 70688 to 71288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,580 DEBUG Processing 660/727 atomic regions from SNP 197920 to 198520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,709 DEBUG Processing 323/720 atomic regions from SNP 96894 to 97494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,745 DEBUG Processing 237/679 atomic regions from SNP 70988 to 71588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,775 DEBUG Processing 661/727 atomic regions from SNP 198220 to 198820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,908 DEBUG Processing 324/720 atomic regions from SNP 97194 to 97794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,938 DEBUG Processing 238/679 atomic regions from SNP 71288 to 71888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,974 DEBUG Processing 662/727 atomic regions from SNP 198520 to 199120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,119 DEBUG Processing 325/720 atomic regions from SNP 97494 to 98094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,132 DEBUG Processing 239/679 atomic regions from SNP 71588 to 72188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,173 DEBUG Processing 663/727 atomic regions from SNP 198820 to 199420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,324 DEBUG Processing 240/679 atomic regions from SNP 71888 to 72488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,327 DEBUG Processing 326/720 atomic regions from SNP 97794 to 98394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,382 DEBUG Processing 664/727 atomic regions from SNP 199120 to 199720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,513 DEBUG Processing 241/679 atomic regions from SNP 72188 to 72788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,546 DEBUG Processing 327/720 atomic regions from SNP 98094 to 98694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,591 DEBUG Processing 665/727 atomic regions from SNP 199420 to 200020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,687 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:53:22,688 DEBUG chr16: Signal quantile: 0.993. signal threshold: 14. Best RMSEA: 0.017 2025-01-31 09:53:22,707 DEBUG Processing 242/679 atomic regions from SNP 72488 to 73088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,747 DEBUG Processing 328/720 atomic regions from SNP 98394 to 98994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,805 DEBUG Processing 666/727 atomic regions from SNP 199720 to 200320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,921 DEBUG Processing 243/679 atomic regions from SNP 72788 to 73388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,940 DEBUG Processing 329/720 atomic regions from SNP 98694 to 99294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,001 DEBUG Processing 667/727 atomic regions from SNP 200020 to 200620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,133 DEBUG Processing 244/679 atomic regions from SNP 73088 to 73688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,144 DEBUG Processing 330/720 atomic regions from SNP 98994 to 99594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,211 DEBUG Processing 668/727 atomic regions from SNP 200320 to 200920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,328 DEBUG Processing 245/679 atomic regions from SNP 73388 to 73988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,367 DEBUG Processing 331/720 atomic regions from SNP 99294 to 99894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,409 DEBUG Processing 669/727 atomic regions from SNP 200620 to 201220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,517 DEBUG Processing 246/679 atomic regions from SNP 73688 to 74288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,585 DEBUG Processing 332/720 atomic regions from SNP 99594 to 100194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,604 DEBUG Processing 670/727 atomic regions from SNP 200920 to 201520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,707 DEBUG Processing 247/679 atomic regions from SNP 73988 to 74588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,798 DEBUG Processing 671/727 atomic regions from SNP 201220 to 201820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,802 DEBUG Processing 333/720 atomic regions from SNP 99894 to 100494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,897 DEBUG Processing 248/679 atomic regions from SNP 74288 to 74888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,996 DEBUG Processing 672/727 atomic regions from SNP 201520 to 202120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,001 DEBUG Processing 334/720 atomic regions from SNP 100194 to 100794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,098 DEBUG Processing 249/679 atomic regions from SNP 74588 to 75188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,198 DEBUG Processing 335/720 atomic regions from SNP 100494 to 101094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,204 DEBUG Processing 673/727 atomic regions from SNP 201820 to 202420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,289 DEBUG Processing 250/679 atomic regions from SNP 74888 to 75488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,291 DEBUG chr16 total SNP count: 169981 2025-01-31 09:53:24,291 DEBUG chr16 length: 98207768 2025-01-31 09:53:24,291 DEBUG ----------------------------------------- 2025-01-31 09:53:24,291 INFO Processing SNPs in chr16 2025-01-31 09:53:24,398 DEBUG Processing 674/727 atomic regions from SNP 202120 to 202720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,407 DEBUG Processing 336/720 atomic regions from SNP 100794 to 101394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,454 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 169981)] 2025-01-31 09:53:24,506 DEBUG Processing 251/679 atomic regions from SNP 75188 to 75788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,565 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:24,591 DEBUG Processing 675/727 atomic regions from SNP 202420 to 203020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,618 DEBUG Processing 337/720 atomic regions from SNP 101094 to 101694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,711 DEBUG Processing 252/679 atomic regions from SNP 75488 to 76088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,783 DEBUG Processing 676/727 atomic regions from SNP 202720 to 203320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,835 DEBUG Processing 338/720 atomic regions from SNP 101394 to 101994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,896 DEBUG Processing 253/679 atomic regions from SNP 75788 to 76388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,976 DEBUG Processing 677/727 atomic regions from SNP 203020 to 203620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,058 DEBUG Processing 339/720 atomic regions from SNP 101694 to 102294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,062 DEBUG Segmenting atomic regions: 2025-01-31 09:53:25,081 DEBUG Processing 254/679 atomic regions from SNP 76088 to 76688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,147 DEBUG Processing 1/667 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,168 DEBUG Processing 678/727 atomic regions from SNP 203320 to 203920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,268 DEBUG Processing 340/720 atomic regions from SNP 101994 to 102594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,269 DEBUG Processing 255/679 atomic regions from SNP 76388 to 76988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,349 DEBUG Processing 2/667 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,362 DEBUG Processing 679/727 atomic regions from SNP 203620 to 204220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,463 DEBUG Processing 256/679 atomic regions from SNP 76688 to 77288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,480 DEBUG Processing 341/720 atomic regions from SNP 102294 to 102894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,553 DEBUG Processing 3/667 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,558 DEBUG Processing 680/727 atomic regions from SNP 203920 to 204520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,655 DEBUG Processing 257/679 atomic regions from SNP 76988 to 77588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,693 DEBUG Processing 342/720 atomic regions from SNP 102594 to 103194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,752 DEBUG Processing 681/727 atomic regions from SNP 204220 to 204820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,761 DEBUG Processing 4/667 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,859 DEBUG Processing 258/679 atomic regions from SNP 77288 to 77888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,909 DEBUG Processing 343/720 atomic regions from SNP 102894 to 103494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,950 DEBUG Processing 682/727 atomic regions from SNP 204520 to 205120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,974 DEBUG Processing 5/667 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,072 DEBUG Processing 259/679 atomic regions from SNP 77588 to 78188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,107 DEBUG Processing 344/720 atomic regions from SNP 103194 to 103794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,144 DEBUG Processing 683/727 atomic regions from SNP 204820 to 205420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,181 DEBUG Processing 6/667 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,260 DEBUG Processing 260/679 atomic regions from SNP 77888 to 78488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,313 DEBUG Processing 345/720 atomic regions from SNP 103494 to 104094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,340 DEBUG Processing 684/727 atomic regions from SNP 205120 to 205720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,387 DEBUG Processing 7/667 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,447 DEBUG Processing 261/679 atomic regions from SNP 78188 to 78788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,518 DEBUG Processing 346/720 atomic regions from SNP 103794 to 104394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,533 DEBUG Processing 685/727 atomic regions from SNP 205420 to 206020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,588 DEBUG Processing 8/667 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,637 DEBUG Processing 262/679 atomic regions from SNP 78488 to 79088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,716 DEBUG Processing 347/720 atomic regions from SNP 104094 to 104694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,727 DEBUG Processing 686/727 atomic regions from SNP 205720 to 206320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,778 DEBUG Processing 9/667 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,826 DEBUG Processing 263/679 atomic regions from SNP 78788 to 79388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,912 DEBUG Processing 348/720 atomic regions from SNP 104394 to 104994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,921 DEBUG Processing 687/727 atomic regions from SNP 206020 to 206620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,972 DEBUG Processing 10/667 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,013 DEBUG Processing 264/679 atomic regions from SNP 79088 to 79688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,108 DEBUG Processing 349/720 atomic regions from SNP 104694 to 105294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,116 DEBUG Processing 688/727 atomic regions from SNP 206320 to 206920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,182 DEBUG Processing 11/667 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,199 DEBUG Processing 265/679 atomic regions from SNP 79388 to 79988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,301 DEBUG Processing 350/720 atomic regions from SNP 104994 to 105594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,310 DEBUG Processing 689/727 atomic regions from SNP 206620 to 207220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,387 DEBUG Processing 266/679 atomic regions from SNP 79688 to 80288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,397 DEBUG Processing 12/667 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,497 DEBUG Processing 351/720 atomic regions from SNP 105294 to 105894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,503 DEBUG Processing 690/727 atomic regions from SNP 206920 to 207520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,589 DEBUG Processing 267/679 atomic regions from SNP 79988 to 80588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,589 DEBUG Processing 13/667 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,693 DEBUG Processing 352/720 atomic regions from SNP 105594 to 106194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,696 DEBUG Processing 691/727 atomic regions from SNP 207220 to 207820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,782 DEBUG Processing 14/667 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,811 DEBUG Processing 268/679 atomic regions from SNP 80288 to 80888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,890 DEBUG Processing 692/727 atomic regions from SNP 207520 to 208120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,910 DEBUG Processing 353/720 atomic regions from SNP 105894 to 106494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,971 DEBUG Processing 15/667 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,016 DEBUG Processing 269/679 atomic regions from SNP 80588 to 81188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,100 DEBUG Processing 693/727 atomic regions from SNP 207820 to 208420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,116 DEBUG Processing 354/720 atomic regions from SNP 106194 to 106794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,161 DEBUG Processing 16/667 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,234 DEBUG Processing 270/679 atomic regions from SNP 80888 to 81488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,294 DEBUG Processing 694/727 atomic regions from SNP 208120 to 208720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,309 DEBUG Processing 355/720 atomic regions from SNP 106494 to 107094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,351 DEBUG Processing 17/667 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,451 DEBUG Processing 271/679 atomic regions from SNP 81188 to 81788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,490 DEBUG Processing 695/727 atomic regions from SNP 208420 to 209020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,502 DEBUG Processing 356/720 atomic regions from SNP 106794 to 107394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,536 DEBUG Processing 18/667 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,668 DEBUG Processing 272/679 atomic regions from SNP 81488 to 82088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,686 DEBUG Processing 696/727 atomic regions from SNP 208720 to 209320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,695 DEBUG Processing 357/720 atomic regions from SNP 107094 to 107694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,724 DEBUG Processing 19/667 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,884 DEBUG Processing 697/727 atomic regions from SNP 209020 to 209620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,886 DEBUG Processing 273/679 atomic regions from SNP 81788 to 82388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,888 DEBUG Processing 358/720 atomic regions from SNP 107394 to 107994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,913 DEBUG Processing 20/667 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,081 DEBUG Processing 359/720 atomic regions from SNP 107694 to 108294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,093 DEBUG Processing 274/679 atomic regions from SNP 82088 to 82688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,104 DEBUG Processing 21/667 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,106 DEBUG Processing 698/727 atomic regions from SNP 209320 to 209920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,275 DEBUG Processing 360/720 atomic regions from SNP 107994 to 108594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,294 DEBUG Processing 22/667 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,297 DEBUG Processing 275/679 atomic regions from SNP 82388 to 82988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,328 DEBUG Processing 699/727 atomic regions from SNP 209620 to 210220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,469 DEBUG Processing 361/720 atomic regions from SNP 108294 to 108894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,485 DEBUG Processing 23/667 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,488 DEBUG Processing 276/679 atomic regions from SNP 82688 to 83288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,532 DEBUG Processing 700/727 atomic regions from SNP 209920 to 210520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,664 DEBUG Processing 362/720 atomic regions from SNP 108594 to 109194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,678 DEBUG Processing 24/667 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,683 DEBUG Processing 277/679 atomic regions from SNP 82988 to 83588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,729 DEBUG Processing 701/727 atomic regions from SNP 210220 to 210820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,854 DEBUG Processing 363/720 atomic regions from SNP 108894 to 109494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,870 DEBUG Processing 25/667 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,872 DEBUG Processing 278/679 atomic regions from SNP 83288 to 83888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,924 DEBUG Processing 702/727 atomic regions from SNP 210520 to 211120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,043 DEBUG Processing 364/720 atomic regions from SNP 109194 to 109794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,059 DEBUG Processing 26/667 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,062 DEBUG Processing 279/679 atomic regions from SNP 83588 to 84188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,144 DEBUG Processing 703/727 atomic regions from SNP 210820 to 211420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,233 DEBUG Processing 365/720 atomic regions from SNP 109494 to 110094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,249 DEBUG Processing 27/667 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,252 DEBUG Processing 280/679 atomic regions from SNP 83888 to 84488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,352 DEBUG Processing 704/727 atomic regions from SNP 211120 to 211720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,424 DEBUG Processing 366/720 atomic regions from SNP 109794 to 110394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,437 DEBUG Processing 28/667 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,461 DEBUG Processing 281/679 atomic regions from SNP 84188 to 84788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,565 DEBUG Processing 705/727 atomic regions from SNP 211420 to 212020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,614 DEBUG Processing 367/720 atomic regions from SNP 110094 to 110694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,626 DEBUG Processing 29/667 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,649 DEBUG Processing 282/679 atomic regions from SNP 84488 to 85088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,790 DEBUG Processing 706/727 atomic regions from SNP 211720 to 212320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,812 DEBUG Processing 368/720 atomic regions from SNP 110394 to 110994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,815 DEBUG Processing 30/667 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,838 DEBUG Processing 283/679 atomic regions from SNP 84788 to 85388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,996 DEBUG Processing 707/727 atomic regions from SNP 212020 to 212620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,004 DEBUG Processing 369/720 atomic regions from SNP 110694 to 111294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,006 DEBUG Processing 31/667 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,047 DEBUG Processing 284/679 atomic regions from SNP 85088 to 85688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,195 DEBUG Processing 370/720 atomic regions from SNP 110994 to 111594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,199 DEBUG Processing 32/667 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,207 DEBUG Processing 708/727 atomic regions from SNP 212320 to 212920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,257 DEBUG Processing 285/679 atomic regions from SNP 85388 to 85988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,383 DEBUG Processing 371/720 atomic regions from SNP 111294 to 111894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,406 DEBUG Processing 709/727 atomic regions from SNP 212620 to 213220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,408 DEBUG Processing 33/667 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,458 DEBUG Processing 286/679 atomic regions from SNP 85688 to 86288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,573 DEBUG Processing 372/720 atomic regions from SNP 111594 to 112194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,617 DEBUG Processing 710/727 atomic regions from SNP 212920 to 213520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,619 DEBUG Processing 34/667 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,646 DEBUG Processing 287/679 atomic regions from SNP 85988 to 86588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,767 DEBUG Processing 373/720 atomic regions from SNP 111894 to 112494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,814 DEBUG Processing 35/667 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,837 DEBUG Processing 288/679 atomic regions from SNP 86288 to 86888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,837 DEBUG Processing 711/727 atomic regions from SNP 213220 to 213820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,961 DEBUG Processing 374/720 atomic regions from SNP 112194 to 112794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,009 DEBUG Processing 36/667 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,027 DEBUG Processing 289/679 atomic regions from SNP 86588 to 87188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,043 DEBUG Processing 712/727 atomic regions from SNP 213520 to 214120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,155 DEBUG Processing 375/720 atomic regions from SNP 112494 to 113094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,198 DEBUG Processing 37/667 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,219 DEBUG Processing 290/679 atomic regions from SNP 86888 to 87488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,262 DEBUG Processing 713/727 atomic regions from SNP 213820 to 214420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,348 DEBUG Processing 376/720 atomic regions from SNP 112794 to 113394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,388 DEBUG Processing 38/667 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,407 DEBUG Processing 291/679 atomic regions from SNP 87188 to 87788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,476 DEBUG Processing 714/727 atomic regions from SNP 214120 to 214720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,540 DEBUG Processing 377/720 atomic regions from SNP 113094 to 113694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,555 DEBUG Segmenting atomic regions: 2025-01-31 09:53:32,577 DEBUG Processing 39/667 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,596 DEBUG Processing 292/679 atomic regions from SNP 87488 to 88088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,632 DEBUG Processing 1/600 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:32,678 DEBUG Processing 715/727 atomic regions from SNP 214420 to 215020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,735 DEBUG Processing 378/720 atomic regions from SNP 113394 to 113994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,766 DEBUG Processing 40/667 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,787 DEBUG Processing 293/679 atomic regions from SNP 87788 to 88388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,810 DEBUG Processing 2/600 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:32,876 DEBUG Processing 716/727 atomic regions from SNP 214720 to 215320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,930 DEBUG Processing 379/720 atomic regions from SNP 113694 to 114294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,958 DEBUG Processing 41/667 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,980 DEBUG Processing 294/679 atomic regions from SNP 88088 to 88688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,989 DEBUG Processing 3/600 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:33,081 DEBUG Processing 717/727 atomic regions from SNP 215020 to 215620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,123 DEBUG Processing 380/720 atomic regions from SNP 113994 to 114594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,149 DEBUG Processing 42/667 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,169 DEBUG Processing 4/600 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:33,170 DEBUG Processing 295/679 atomic regions from SNP 88388 to 88988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,276 DEBUG Processing 718/727 atomic regions from SNP 215320 to 215920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,321 DEBUG Processing 381/720 atomic regions from SNP 114294 to 114894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,345 DEBUG Processing 43/667 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,354 DEBUG Processing 5/600 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:33,361 DEBUG Processing 296/679 atomic regions from SNP 88688 to 89288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,473 DEBUG Processing 719/727 atomic regions from SNP 215620 to 216220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,518 DEBUG Processing 382/720 atomic regions from SNP 114594 to 115194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,534 DEBUG Processing 6/600 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:33,536 DEBUG Processing 44/667 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,551 DEBUG Processing 297/679 atomic regions from SNP 88988 to 89588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,668 DEBUG Processing 720/727 atomic regions from SNP 215920 to 216520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,716 DEBUG Processing 7/600 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:33,717 DEBUG Processing 383/720 atomic regions from SNP 114894 to 115494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,729 DEBUG Processing 45/667 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,741 DEBUG Processing 298/679 atomic regions from SNP 89288 to 89888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,863 DEBUG Processing 721/727 atomic regions from SNP 216220 to 216820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,898 DEBUG Processing 8/600 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:33,915 DEBUG Processing 384/720 atomic regions from SNP 115194 to 115794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,920 DEBUG Processing 46/667 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,932 DEBUG Processing 299/679 atomic regions from SNP 89588 to 90188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,070 DEBUG Processing 722/727 atomic regions from SNP 216520 to 217120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,080 DEBUG Processing 9/600 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:34,114 DEBUG Processing 47/667 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,114 DEBUG Processing 385/720 atomic regions from SNP 115494 to 116094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,125 DEBUG Processing 300/679 atomic regions from SNP 89888 to 90488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,260 DEBUG Processing 10/600 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:34,281 DEBUG Processing 723/727 atomic regions from SNP 216820 to 217420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,305 DEBUG Processing 48/667 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,311 DEBUG Processing 386/720 atomic regions from SNP 115794 to 116394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,318 DEBUG Processing 301/679 atomic regions from SNP 90188 to 90788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,439 DEBUG Processing 11/600 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:34,486 DEBUG Processing 724/727 atomic regions from SNP 217120 to 217720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,499 DEBUG Processing 49/667 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,506 DEBUG Processing 387/720 atomic regions from SNP 116094 to 116694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,529 DEBUG Processing 302/679 atomic regions from SNP 90488 to 91088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,636 DEBUG Processing 12/600 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:34,686 DEBUG Processing 725/727 atomic regions from SNP 217420 to 218020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,693 DEBUG Processing 50/667 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,702 DEBUG Processing 388/720 atomic regions from SNP 116394 to 116994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,755 DEBUG Processing 303/679 atomic regions from SNP 90788 to 91388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,831 DEBUG Processing 13/600 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:34,884 DEBUG Processing 51/667 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,888 DEBUG Processing 726/727 atomic regions from SNP 217720 to 218320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,900 DEBUG Processing 389/720 atomic regions from SNP 116694 to 117294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,972 DEBUG Processing 304/679 atomic regions from SNP 91088 to 91688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,007 DEBUG Processing 14/600 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,075 DEBUG Processing 52/667 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,088 DEBUG Processing 727/727 atomic regions from SNP 218020 to 218620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,099 DEBUG Processing 390/720 atomic regions from SNP 116994 to 117594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,181 DEBUG Processing 305/679 atomic regions from SNP 91388 to 91988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,185 DEBUG Processing 15/600 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,222 DEBUG Unique SNPs positions in subchromosome 1: 218621 2025-01-31 09:53:35,267 DEBUG Processing 53/667 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,304 DEBUG Processing 391/720 atomic regions from SNP 117294 to 117894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,359 DEBUG Processing 16/600 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,397 DEBUG Processing 306/679 atomic regions from SNP 91688 to 92288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,456 DEBUG Processing 54/667 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,512 DEBUG Processing 392/720 atomic regions from SNP 117594 to 118194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,534 DEBUG Processing 17/600 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,620 DEBUG Processing 307/679 atomic regions from SNP 91988 to 92588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,646 DEBUG Processing 55/667 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,712 DEBUG Processing 18/600 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,734 DEBUG Processing 393/720 atomic regions from SNP 117894 to 118494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,837 DEBUG Processing 56/667 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,845 DEBUG Processing 308/679 atomic regions from SNP 92288 to 92888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,893 DEBUG Processing 19/600 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,951 DEBUG Processing 394/720 atomic regions from SNP 118194 to 118794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,032 DEBUG Processing 57/667 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,073 DEBUG Processing 20/600 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,079 DEBUG Processing 309/679 atomic regions from SNP 92588 to 93188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,159 DEBUG Processing 395/720 atomic regions from SNP 118494 to 119094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,223 DEBUG Processing 58/667 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,258 DEBUG Processing 21/600 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,299 DEBUG Processing 310/679 atomic regions from SNP 92888 to 93488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,373 DEBUG Processing 396/720 atomic regions from SNP 118794 to 119394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,412 DEBUG Processing 59/667 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,442 DEBUG Processing 22/600 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,495 DEBUG Processing 311/679 atomic regions from SNP 93188 to 93788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,598 DEBUG Processing 397/720 atomic regions from SNP 119094 to 119694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,600 DEBUG Processing 60/667 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,621 DEBUG Processing 23/600 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,686 DEBUG Processing 312/679 atomic regions from SNP 93488 to 94088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,791 DEBUG Processing 61/667 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,798 DEBUG Processing 24/600 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,831 DEBUG Processing 398/720 atomic regions from SNP 119394 to 119994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,875 DEBUG Processing 313/679 atomic regions from SNP 93788 to 94388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,976 DEBUG Processing 25/600 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,981 DEBUG Processing 62/667 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,062 DEBUG Processing 399/720 atomic regions from SNP 119694 to 120294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,064 DEBUG Processing 314/679 atomic regions from SNP 94088 to 94688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,147 DEBUG Processing 26/600 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,169 DEBUG Processing 63/667 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,252 DEBUG Processing 315/679 atomic regions from SNP 94388 to 94988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,286 DEBUG Processing 400/720 atomic regions from SNP 119994 to 120594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,322 DEBUG Processing 27/600 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,356 DEBUG Processing 64/667 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,451 DEBUG Processing 316/679 atomic regions from SNP 94688 to 95288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,501 DEBUG Processing 28/600 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,508 DEBUG Processing 401/720 atomic regions from SNP 120294 to 120894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,542 DEBUG Processing 65/667 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,644 DEBUG Processing 317/679 atomic regions from SNP 94988 to 95588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,688 DEBUG Processing 29/600 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,728 DEBUG Processing 402/720 atomic regions from SNP 120594 to 121194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,730 DEBUG Processing 66/667 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,831 DEBUG Processing 318/679 atomic regions from SNP 95288 to 95888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,892 DEBUG Processing 30/600 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,918 DEBUG Processing 67/667 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,953 DEBUG Processing 403/720 atomic regions from SNP 120894 to 121494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,018 DEBUG Processing 319/679 atomic regions from SNP 95588 to 96188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,072 DEBUG Processing 31/600 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,108 DEBUG Processing 68/667 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,178 DEBUG Processing 404/720 atomic regions from SNP 121194 to 121794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,205 DEBUG Processing 320/679 atomic regions from SNP 95888 to 96488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,258 DEBUG Processing 32/600 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,295 DEBUG Processing 69/667 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,374 DEBUG Processing 405/720 atomic regions from SNP 121494 to 122094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,393 DEBUG Processing 321/679 atomic regions from SNP 96188 to 96788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,467 DEBUG Processing 33/600 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,484 DEBUG Processing 70/667 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,567 DEBUG Processing 406/720 atomic regions from SNP 121794 to 122394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,583 DEBUG Processing 322/679 atomic regions from SNP 96488 to 97088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,655 DEBUG Processing 34/600 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,680 DEBUG Processing 71/667 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,765 DEBUG Processing 407/720 atomic regions from SNP 122094 to 122694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,775 DEBUG Processing 323/679 atomic regions from SNP 96788 to 97388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,858 DEBUG Processing 35/600 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,871 DEBUG Processing 72/667 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,961 DEBUG Processing 408/720 atomic regions from SNP 122394 to 122994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,966 DEBUG Processing 324/679 atomic regions from SNP 97088 to 97688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,062 DEBUG Processing 73/667 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,062 DEBUG Processing 36/600 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,157 DEBUG Processing 409/720 atomic regions from SNP 122694 to 123294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,180 DEBUG Processing 325/679 atomic regions from SNP 97388 to 97988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,243 DEBUG Processing 37/600 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,252 DEBUG Processing 74/667 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,346 DEBUG Processing 410/720 atomic regions from SNP 122994 to 123594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,403 DEBUG Processing 326/679 atomic regions from SNP 97688 to 98288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,418 DEBUG Processing 38/600 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,443 DEBUG Processing 75/667 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,540 DEBUG Processing 411/720 atomic regions from SNP 123294 to 123894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,590 DEBUG Processing 39/600 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,625 DEBUG Processing 327/679 atomic regions from SNP 97988 to 98588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,632 DEBUG Processing 76/667 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,736 DEBUG Processing 412/720 atomic regions from SNP 123594 to 124194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,762 DEBUG Processing 40/600 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,820 DEBUG Processing 77/667 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,842 DEBUG Processing 328/679 atomic regions from SNP 98288 to 98888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,938 DEBUG Processing 413/720 atomic regions from SNP 123894 to 124494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,940 DEBUG Processing 41/600 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,015 DEBUG Processing 78/667 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,039 DEBUG Processing 329/679 atomic regions from SNP 98588 to 99188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,120 DEBUG Processing 42/600 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,159 DEBUG Processing 414/720 atomic regions from SNP 124194 to 124794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,205 DEBUG Processing 79/667 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,247 DEBUG Processing 330/679 atomic regions from SNP 98888 to 99488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,301 DEBUG Processing 43/600 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,381 DEBUG Processing 415/720 atomic regions from SNP 124494 to 125094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,395 DEBUG Processing 80/667 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,453 DEBUG Processing 331/679 atomic regions from SNP 99188 to 99788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,481 DEBUG Processing 44/600 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,584 DEBUG Processing 81/667 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,584 DEBUG Processing 416/720 atomic regions from SNP 124794 to 125394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,641 DEBUG Processing 332/679 atomic regions from SNP 99488 to 100088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,658 DEBUG Processing 45/600 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,782 DEBUG Processing 417/720 atomic regions from SNP 125094 to 125694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,789 DEBUG Processing 82/667 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,830 DEBUG Processing 333/679 atomic regions from SNP 99788 to 100388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,835 DEBUG Processing 46/600 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,992 DEBUG Processing 83/667 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,999 DEBUG Processing 418/720 atomic regions from SNP 125394 to 125994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,016 DEBUG Processing 47/600 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,032 DEBUG Processing 334/679 atomic regions from SNP 100088 to 100688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,097 DEBUG Subchromosome time: 178.80524180456996, subchromosome SNPs: 218621 2025-01-31 09:53:41,097 DEBUG Estimated BADs: [0.75, 1.50, 0.75, 6.01, 1.50, 0.38, 1.50, 7.52, 1.50, 4.51, 1.50, 3.01, 1.50, 0.75, 3.01, 0.50, 1.50, 4.51, 3.01, 1.50, 3.01] SNP counts: [17329, 3868, 8484, 2938, 28578, 3316, 7984, 749, 23000, 5538, 2875, 10554, 25785, 15234, 750, 5327, 23060, 5119, 3031, 15871, 9231] SNP IDs counts: [17329, 3868, 8484, 2938, 28578, 3316, 7984, 749, 23000, 5538, 2875, 10554, 25785, 15234, 750, 5327, 23060, 5119, 3031, 15871, 9231] Critical gap: 596830bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.29Mbp, 15.46Mbp, 20.49Mbp, 22.04Mbp, 37.85Mbp, 39.77Mbp, 44.05Mbp, 44.45Mbp, 56.84Mbp, 59.75Mbp, 61.27Mbp, 66.83Mbp, 80.97Mbp, 90.11Mbp, 90.54Mbp, 93.67Mbp, 106.14Mbp, 108.91Mbp, 110.67Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:53:41,097 DEBUG chr9 time: 178.8057487718761 s 2025-01-31 09:53:41,182 DEBUG Processing 84/667 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,192 DEBUG Processing 48/600 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,208 DEBUG Processing 419/720 atomic regions from SNP 125694 to 126294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,227 DEBUG chr9: Fitting background model for 21 segments 2025-01-31 09:53:41,248 DEBUG Processing 335/679 atomic regions from SNP 100388 to 100988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,370 DEBUG Processing 49/600 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,371 DEBUG Processing 85/667 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,403 DEBUG Processing 420/720 atomic regions from SNP 125994 to 126594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,473 DEBUG Processing 336/679 atomic regions from SNP 100688 to 101288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,546 DEBUG Processing 50/600 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,576 DEBUG Processing 86/667 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,600 DEBUG Processing 421/720 atomic regions from SNP 126294 to 126894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,671 DEBUG Processing 337/679 atomic regions from SNP 100988 to 101588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,729 DEBUG Processing 51/600 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,795 DEBUG Processing 87/667 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,803 DEBUG Processing 422/720 atomic regions from SNP 126594 to 127194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,866 DEBUG Processing 338/679 atomic regions from SNP 101288 to 101888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,903 DEBUG Processing 52/600 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,998 DEBUG Processing 88/667 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,000 DEBUG Processing 423/720 atomic regions from SNP 126894 to 127494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,068 DEBUG Processing 339/679 atomic regions from SNP 101588 to 102188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,082 DEBUG Processing 53/600 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,187 DEBUG Processing 89/667 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,197 DEBUG Processing 424/720 atomic regions from SNP 127194 to 127794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,274 DEBUG Processing 340/679 atomic regions from SNP 101888 to 102488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,282 DEBUG Processing 54/600 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,376 DEBUG Processing 90/667 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,389 DEBUG Processing 425/720 atomic regions from SNP 127494 to 128094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,461 DEBUG Processing 341/679 atomic regions from SNP 102188 to 102788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,483 DEBUG Processing 55/600 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,564 DEBUG Processing 91/667 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,582 DEBUG Processing 426/720 atomic regions from SNP 127794 to 128394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,650 DEBUG Processing 342/679 atomic regions from SNP 102488 to 103088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,660 DEBUG Processing 56/600 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,751 DEBUG Processing 92/667 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,776 DEBUG Processing 427/720 atomic regions from SNP 128094 to 128694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,836 DEBUG Processing 57/600 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,843 DEBUG Processing 343/679 atomic regions from SNP 102788 to 103388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,939 DEBUG Processing 93/667 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,992 DEBUG Processing 428/720 atomic regions from SNP 128394 to 128994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,018 DEBUG Processing 58/600 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,033 DEBUG Processing 344/679 atomic regions from SNP 103088 to 103688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,127 DEBUG Processing 94/667 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,192 DEBUG Processing 59/600 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,209 DEBUG Processing 429/720 atomic regions from SNP 128694 to 129294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,225 DEBUG Processing 345/679 atomic regions from SNP 103388 to 103988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,314 DEBUG Processing 95/667 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,367 DEBUG Processing 60/600 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,415 DEBUG Processing 430/720 atomic regions from SNP 128994 to 129594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,423 DEBUG Processing 346/679 atomic regions from SNP 103688 to 104288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,501 DEBUG Processing 96/667 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,541 DEBUG Processing 61/600 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,613 DEBUG Processing 347/679 atomic regions from SNP 103988 to 104588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,634 DEBUG Processing 431/720 atomic regions from SNP 129294 to 129894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,688 DEBUG Processing 97/667 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,716 DEBUG Processing 62/600 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,801 DEBUG Processing 348/679 atomic regions from SNP 104288 to 104888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,860 DEBUG Processing 432/720 atomic regions from SNP 129594 to 130194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,884 DEBUG Processing 98/667 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,891 DEBUG Processing 63/600 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,987 DEBUG Processing 349/679 atomic regions from SNP 104588 to 105188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,070 DEBUG Processing 64/600 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,075 DEBUG Processing 99/667 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,087 DEBUG Processing 433/720 atomic regions from SNP 129894 to 130494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,173 DEBUG Processing 350/679 atomic regions from SNP 104888 to 105488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,249 DEBUG Processing 65/600 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,261 DEBUG Processing 100/667 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,305 DEBUG Processing 434/720 atomic regions from SNP 130194 to 130794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,368 DEBUG Processing 351/679 atomic regions from SNP 105188 to 105788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,428 DEBUG Processing 66/600 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,449 DEBUG Processing 101/667 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,519 DEBUG Processing 435/720 atomic regions from SNP 130494 to 131094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,572 DEBUG Processing 352/679 atomic regions from SNP 105488 to 106088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,608 DEBUG Processing 67/600 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,637 DEBUG Processing 102/667 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,720 DEBUG Processing 436/720 atomic regions from SNP 130794 to 131394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,781 DEBUG Processing 353/679 atomic regions from SNP 105788 to 106388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,787 DEBUG Processing 68/600 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,857 DEBUG Processing 103/667 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,918 DEBUG Processing 437/720 atomic regions from SNP 131094 to 131694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,966 DEBUG Processing 69/600 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,988 DEBUG Processing 354/679 atomic regions from SNP 106088 to 106688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,077 DEBUG Processing 104/667 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,128 DEBUG Processing 438/720 atomic regions from SNP 131394 to 131994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,146 DEBUG Processing 70/600 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,203 DEBUG Processing 355/679 atomic regions from SNP 106388 to 106988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,289 DEBUG Processing 105/667 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,328 DEBUG Processing 71/600 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,333 DEBUG Processing 439/720 atomic regions from SNP 131694 to 132294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,405 DEBUG Processing 356/679 atomic regions from SNP 106688 to 107288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,499 DEBUG Processing 106/667 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,511 DEBUG Processing 72/600 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,527 DEBUG Processing 440/720 atomic regions from SNP 131994 to 132594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,614 DEBUG Processing 357/679 atomic regions from SNP 106988 to 107588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,695 DEBUG Processing 73/600 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,703 DEBUG Processing 107/667 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,725 DEBUG Processing 441/720 atomic regions from SNP 132294 to 132894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,822 DEBUG Processing 358/679 atomic regions from SNP 107288 to 107888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,875 DEBUG Processing 74/600 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,895 DEBUG Processing 108/667 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,923 DEBUG Processing 442/720 atomic regions from SNP 132594 to 133194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,044 DEBUG Processing 359/679 atomic regions from SNP 107588 to 108188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,055 DEBUG Processing 75/600 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,091 DEBUG Processing 109/667 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,118 DEBUG Processing 443/720 atomic regions from SNP 132894 to 133494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,185 DEBUG Segmenting atomic regions: 2025-01-31 09:53:46,231 DEBUG Processing 76/600 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,257 DEBUG Processing 1/565 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:46,263 DEBUG Processing 360/679 atomic regions from SNP 107888 to 108488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,284 DEBUG Processing 110/667 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,316 DEBUG Processing 444/720 atomic regions from SNP 133194 to 133794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,407 DEBUG Processing 77/600 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,434 DEBUG Processing 2/565 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:46,476 DEBUG Processing 361/679 atomic regions from SNP 108188 to 108788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,478 DEBUG Processing 111/667 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,536 DEBUG Processing 445/720 atomic regions from SNP 133494 to 134094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,581 DEBUG Processing 78/600 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,621 DEBUG Processing 3/565 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:46,671 DEBUG Processing 362/679 atomic regions from SNP 108488 to 109088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,676 DEBUG Processing 112/667 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,749 DEBUG Processing 446/720 atomic regions from SNP 133794 to 134394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,755 DEBUG Processing 79/600 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,812 DEBUG Processing 4/565 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:46,867 DEBUG Processing 363/679 atomic regions from SNP 108788 to 109388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,871 DEBUG Processing 113/667 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,939 DEBUG Processing 80/600 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,973 DEBUG Processing 447/720 atomic regions from SNP 134094 to 134694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,009 DEBUG Processing 5/565 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,060 DEBUG Processing 364/679 atomic regions from SNP 109088 to 109688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,067 DEBUG Processing 114/667 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,125 DEBUG Processing 81/600 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,200 DEBUG Processing 6/565 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,204 DEBUG Processing 448/720 atomic regions from SNP 134394 to 134994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,263 DEBUG Processing 115/667 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,279 DEBUG Processing 365/679 atomic regions from SNP 109388 to 109988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,307 DEBUG Processing 82/600 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,401 DEBUG Processing 7/565 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,433 DEBUG Processing 449/720 atomic regions from SNP 134694 to 135294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,458 DEBUG Processing 116/667 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,475 DEBUG Processing 366/679 atomic regions from SNP 109688 to 110288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,487 DEBUG Processing 83/600 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,609 DEBUG Processing 8/565 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,651 DEBUG Processing 117/667 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,657 DEBUG Processing 450/720 atomic regions from SNP 134994 to 135594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,666 DEBUG Processing 367/679 atomic regions from SNP 109988 to 110588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,668 DEBUG Processing 84/600 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,816 DEBUG Processing 9/565 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,846 DEBUG Processing 118/667 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,855 DEBUG Processing 85/600 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,862 DEBUG Processing 368/679 atomic regions from SNP 110288 to 110888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,880 DEBUG Processing 451/720 atomic regions from SNP 135294 to 135894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,024 DEBUG Processing 10/565 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,039 DEBUG Processing 119/667 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,039 DEBUG Processing 86/600 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,055 DEBUG Processing 369/679 atomic regions from SNP 110588 to 111188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,101 DEBUG Processing 452/720 atomic regions from SNP 135594 to 136194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,217 DEBUG Processing 87/600 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,228 DEBUG Processing 11/565 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,237 DEBUG Processing 120/667 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,249 DEBUG Processing 370/679 atomic regions from SNP 110888 to 111488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,305 DEBUG Processing 453/720 atomic regions from SNP 135894 to 136494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,398 DEBUG Processing 88/600 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,432 DEBUG Processing 12/565 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,432 DEBUG Processing 121/667 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,443 DEBUG Processing 371/679 atomic regions from SNP 111188 to 111788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,509 DEBUG Processing 454/720 atomic regions from SNP 136194 to 136794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,579 DEBUG Processing 89/600 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,619 DEBUG Processing 13/565 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,631 DEBUG Processing 122/667 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,637 DEBUG Processing 372/679 atomic regions from SNP 111488 to 112088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,725 DEBUG Processing 455/720 atomic regions from SNP 136494 to 137094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,762 DEBUG Processing 90/600 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,796 DEBUG Processing 14/565 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,828 DEBUG Processing 123/667 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,832 DEBUG Processing 373/679 atomic regions from SNP 111788 to 112388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,930 DEBUG Processing 456/720 atomic regions from SNP 136794 to 137394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,946 DEBUG Processing 91/600 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,973 DEBUG Processing 15/565 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,025 DEBUG Processing 374/679 atomic regions from SNP 112088 to 112688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,027 DEBUG Processing 124/667 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,130 DEBUG Processing 457/720 atomic regions from SNP 137094 to 137694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,133 DEBUG Processing 92/600 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:49,147 DEBUG Processing 16/565 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,218 DEBUG Processing 375/679 atomic regions from SNP 112388 to 112988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,219 DEBUG Processing 125/667 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,321 DEBUG Processing 93/600 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:49,322 DEBUG Processing 17/565 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,338 DEBUG Processing 458/720 atomic regions from SNP 137394 to 137994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,409 DEBUG Processing 376/679 atomic regions from SNP 112688 to 113288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,413 DEBUG Processing 126/667 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,495 DEBUG Processing 18/565 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,505 DEBUG Processing 94/600 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:49,562 DEBUG Processing 459/720 atomic regions from SNP 137694 to 138294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,601 DEBUG Processing 377/679 atomic regions from SNP 112988 to 113588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,603 DEBUG Processing 127/667 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,668 DEBUG Processing 19/565 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,684 DEBUG Processing 95/600 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:49,771 DEBUG Processing 460/720 atomic regions from SNP 137994 to 138594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,792 DEBUG Processing 378/679 atomic regions from SNP 113288 to 113888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,822 DEBUG Processing 128/667 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,843 DEBUG Processing 20/565 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,865 DEBUG Processing 96/600 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:49,983 DEBUG Processing 461/720 atomic regions from SNP 138294 to 138894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,985 DEBUG Processing 379/679 atomic regions from SNP 113588 to 114188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,014 DEBUG Processing 21/565 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,042 DEBUG Processing 97/600 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,044 DEBUG Processing 129/667 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,191 DEBUG Processing 462/720 atomic regions from SNP 138594 to 139194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,197 DEBUG Processing 22/565 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,202 DEBUG Processing 380/679 atomic regions from SNP 113888 to 114488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,220 DEBUG Processing 98/600 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,247 DEBUG Processing 130/667 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,371 DEBUG Processing 23/565 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,390 DEBUG Processing 463/720 atomic regions from SNP 138894 to 139494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,399 DEBUG Processing 99/600 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,423 DEBUG Processing 381/679 atomic regions from SNP 114188 to 114788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,439 DEBUG Processing 131/667 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,547 DEBUG Processing 24/565 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,581 DEBUG Processing 100/600 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,584 DEBUG Processing 464/720 atomic regions from SNP 139194 to 139794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,626 DEBUG Processing 382/679 atomic regions from SNP 114488 to 115088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,631 DEBUG Processing 132/667 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,718 DEBUG Processing 25/565 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,762 DEBUG Processing 101/600 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,777 DEBUG Processing 465/720 atomic regions from SNP 139494 to 140094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,817 DEBUG Processing 383/679 atomic regions from SNP 114788 to 115388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,824 DEBUG Processing 133/667 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,889 DEBUG Processing 26/565 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,942 DEBUG Processing 102/600 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,969 DEBUG Processing 466/720 atomic regions from SNP 139794 to 140394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,007 DEBUG Processing 384/679 atomic regions from SNP 115088 to 115688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,016 DEBUG Processing 134/667 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,062 DEBUG Processing 27/565 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,124 DEBUG Processing 103/600 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,163 DEBUG Processing 467/720 atomic regions from SNP 140094 to 140694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,199 DEBUG Processing 385/679 atomic regions from SNP 115388 to 115988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,210 DEBUG Processing 135/667 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,235 DEBUG Processing 28/565 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,303 DEBUG Processing 104/600 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,356 DEBUG Processing 468/720 atomic regions from SNP 140394 to 140994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,389 DEBUG Processing 386/679 atomic regions from SNP 115688 to 116288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,403 DEBUG Processing 136/667 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,409 DEBUG Processing 29/565 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,479 DEBUG Processing 105/600 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,551 DEBUG Processing 469/720 atomic regions from SNP 140694 to 141294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,581 DEBUG Processing 387/679 atomic regions from SNP 115988 to 116588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,584 DEBUG Processing 30/565 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,596 DEBUG Processing 137/667 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,660 DEBUG Processing 106/600 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,742 DEBUG Processing 470/720 atomic regions from SNP 140994 to 141594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,757 DEBUG Processing 31/565 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,774 DEBUG Processing 388/679 atomic regions from SNP 116288 to 116888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,788 DEBUG Processing 138/667 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,841 DEBUG Processing 107/600 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,935 DEBUG Processing 471/720 atomic regions from SNP 141294 to 141894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,952 DEBUG Processing 32/565 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,964 DEBUG Processing 389/679 atomic regions from SNP 116588 to 117188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,980 DEBUG Processing 139/667 atomic regions from SNP 41538 to 42139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,019 DEBUG Processing 108/600 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,129 DEBUG Processing 472/720 atomic regions from SNP 141594 to 142194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,155 DEBUG Processing 390/679 atomic regions from SNP 116888 to 117488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,158 DEBUG Processing 33/565 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,170 DEBUG Processing 140/667 atomic regions from SNP 41839 to 42440 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,198 DEBUG Processing 109/600 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,324 DEBUG Processing 473/720 atomic regions from SNP 141894 to 142494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,347 DEBUG Processing 391/679 atomic regions from SNP 117188 to 117788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,351 DEBUG Processing 34/565 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,365 DEBUG Processing 141/667 atomic regions from SNP 42140 to 42741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,380 DEBUG Processing 110/600 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,521 DEBUG Processing 474/720 atomic regions from SNP 142194 to 142794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,530 DEBUG Processing 35/565 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,539 DEBUG Processing 392/679 atomic regions from SNP 117488 to 118088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,559 DEBUG Processing 142/667 atomic regions from SNP 42441 to 43042 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,562 DEBUG Processing 111/600 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,704 DEBUG Processing 36/565 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,716 DEBUG Processing 475/720 atomic regions from SNP 142494 to 143094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,730 DEBUG Processing 393/679 atomic regions from SNP 117788 to 118388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,741 DEBUG Processing 112/600 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,751 DEBUG Processing 143/667 atomic regions from SNP 42742 to 43343 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,878 DEBUG Processing 37/565 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,912 DEBUG Processing 476/720 atomic regions from SNP 142794 to 143394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,920 DEBUG Processing 394/679 atomic regions from SNP 118088 to 118688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,921 DEBUG Processing 113/600 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,942 DEBUG Processing 144/667 atomic regions from SNP 43043 to 43644 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,052 DEBUG Processing 38/565 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,105 DEBUG Processing 114/600 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,109 DEBUG Processing 477/720 atomic regions from SNP 143094 to 143694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,111 DEBUG Processing 395/679 atomic regions from SNP 118388 to 118988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,141 DEBUG Processing 145/667 atomic regions from SNP 43344 to 43945 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,224 DEBUG Processing 39/565 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,292 DEBUG Processing 115/600 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,303 DEBUG Processing 396/679 atomic regions from SNP 118688 to 119288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,324 DEBUG Processing 478/720 atomic regions from SNP 143394 to 143994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,346 DEBUG Processing 146/667 atomic regions from SNP 43645 to 44246 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,395 DEBUG Processing 40/565 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,476 DEBUG Processing 116/600 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,519 DEBUG Processing 397/679 atomic regions from SNP 118988 to 119588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,544 DEBUG Processing 479/720 atomic regions from SNP 143694 to 144294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,552 DEBUG Processing 147/667 atomic regions from SNP 43946 to 44547 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,571 DEBUG Processing 41/565 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,654 DEBUG Processing 117/600 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,735 DEBUG Processing 398/679 atomic regions from SNP 119288 to 119888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,743 DEBUG Processing 480/720 atomic regions from SNP 143994 to 144594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,747 DEBUG Processing 42/565 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,764 DEBUG Processing 148/667 atomic regions from SNP 44247 to 44848 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,831 DEBUG Processing 118/600 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,923 DEBUG Processing 43/565 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,937 DEBUG Processing 399/679 atomic regions from SNP 119588 to 120188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,964 DEBUG Processing 481/720 atomic regions from SNP 144294 to 144894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,989 DEBUG Processing 149/667 atomic regions from SNP 44548 to 45149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,007 DEBUG Processing 119/600 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,114 DEBUG Processing 44/565 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,131 DEBUG Processing 400/679 atomic regions from SNP 119888 to 120488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,156 DEBUG Processing 482/720 atomic regions from SNP 144594 to 145194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,187 DEBUG Processing 120/600 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,199 DEBUG Processing 150/667 atomic regions from SNP 44849 to 45450 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,317 DEBUG Processing 45/565 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,323 DEBUG Processing 401/679 atomic regions from SNP 120188 to 120788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,349 DEBUG Processing 483/720 atomic regions from SNP 144894 to 145494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,366 DEBUG Processing 121/600 atomic regions from SNP 36120 to 36721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,409 DEBUG Processing 151/667 atomic regions from SNP 45150 to 45751 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,515 DEBUG Processing 46/565 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,516 DEBUG Processing 402/679 atomic regions from SNP 120488 to 121088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,543 DEBUG Processing 484/720 atomic regions from SNP 145194 to 145794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,543 DEBUG Processing 122/600 atomic regions from SNP 36421 to 37022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,598 DEBUG Processing 152/667 atomic regions from SNP 45451 to 46052 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,707 DEBUG Processing 47/565 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,720 DEBUG Processing 123/600 atomic regions from SNP 36722 to 37323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,727 DEBUG Processing 403/679 atomic regions from SNP 120788 to 121388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,735 DEBUG Processing 485/720 atomic regions from SNP 145494 to 146094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,788 DEBUG Processing 153/667 atomic regions from SNP 45752 to 46353 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,896 DEBUG Processing 124/600 atomic regions from SNP 37023 to 37623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,905 DEBUG Processing 48/565 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,941 DEBUG Processing 486/720 atomic regions from SNP 145794 to 146394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,951 DEBUG Processing 404/679 atomic regions from SNP 121088 to 121688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,990 DEBUG Processing 154/667 atomic regions from SNP 46053 to 46654 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,074 DEBUG Processing 125/600 atomic regions from SNP 37323 to 37923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,111 DEBUG Processing 49/565 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,141 DEBUG Processing 487/720 atomic regions from SNP 146094 to 146694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,184 DEBUG Processing 405/679 atomic regions from SNP 121388 to 121988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,195 DEBUG Processing 155/667 atomic regions from SNP 46354 to 46955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,260 DEBUG Processing 126/600 atomic regions from SNP 37623 to 38223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,305 DEBUG Processing 50/565 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,342 DEBUG Processing 488/720 atomic regions from SNP 146394 to 146994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,412 DEBUG Processing 406/679 atomic regions from SNP 121688 to 122288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,416 DEBUG Processing 156/667 atomic regions from SNP 46655 to 47256 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,441 DEBUG Processing 127/600 atomic regions from SNP 37923 to 38523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,489 DEBUG Processing 51/565 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,553 DEBUG Processing 489/720 atomic regions from SNP 146694 to 147294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,619 DEBUG Processing 128/600 atomic regions from SNP 38223 to 38823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,633 DEBUG Processing 407/679 atomic regions from SNP 121988 to 122588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,650 DEBUG Processing 157/667 atomic regions from SNP 46956 to 47557 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,674 DEBUG Processing 52/565 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,774 DEBUG Processing 490/720 atomic regions from SNP 146994 to 147594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,798 DEBUG Processing 129/600 atomic regions from SNP 38523 to 39123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,847 DEBUG Processing 158/667 atomic regions from SNP 47257 to 47858 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,860 DEBUG Processing 53/565 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,860 DEBUG Processing 408/679 atomic regions from SNP 122288 to 122888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,974 DEBUG Processing 130/600 atomic regions from SNP 38823 to 39423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,996 DEBUG Processing 491/720 atomic regions from SNP 147294 to 147894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,037 DEBUG Processing 54/565 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,047 DEBUG Processing 159/667 atomic regions from SNP 47558 to 48159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,076 DEBUG Processing 409/679 atomic regions from SNP 122588 to 123188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,145 DEBUG Processing 131/600 atomic regions from SNP 39123 to 39723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,193 DEBUG Processing 492/720 atomic regions from SNP 147594 to 148194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,218 DEBUG Processing 55/565 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,244 DEBUG Processing 160/667 atomic regions from SNP 47859 to 48460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,284 DEBUG Processing 410/679 atomic regions from SNP 122888 to 123488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,315 DEBUG Processing 132/600 atomic regions from SNP 39423 to 40023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,393 DEBUG Processing 56/565 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,405 DEBUG Processing 493/720 atomic regions from SNP 147894 to 148494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,440 DEBUG Processing 161/667 atomic regions from SNP 48160 to 48761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,484 DEBUG Processing 411/679 atomic regions from SNP 123188 to 123788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,486 DEBUG Processing 133/600 atomic regions from SNP 39723 to 40323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,567 DEBUG Processing 57/565 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,617 DEBUG Processing 494/720 atomic regions from SNP 148194 to 148794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,632 DEBUG Processing 162/667 atomic regions from SNP 48461 to 49062 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,658 DEBUG Processing 134/600 atomic regions from SNP 40023 to 40623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,678 DEBUG Processing 412/679 atomic regions from SNP 123488 to 124088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,769 DEBUG Processing 58/565 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,812 DEBUG Processing 495/720 atomic regions from SNP 148494 to 149094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,824 DEBUG Processing 163/667 atomic regions from SNP 48762 to 49363 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,832 DEBUG Processing 135/600 atomic regions from SNP 40323 to 40923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,868 DEBUG Processing 413/679 atomic regions from SNP 123788 to 124388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,944 DEBUG Processing 59/565 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,006 DEBUG Processing 136/600 atomic regions from SNP 40623 to 41223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,017 DEBUG Processing 496/720 atomic regions from SNP 148794 to 149394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,018 DEBUG Processing 164/667 atomic regions from SNP 49063 to 49664 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,061 DEBUG Processing 414/679 atomic regions from SNP 124088 to 124688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,131 DEBUG Processing 60/565 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,186 DEBUG Processing 137/600 atomic regions from SNP 40923 to 41523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,210 DEBUG Processing 165/667 atomic regions from SNP 49364 to 49965 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,242 DEBUG Processing 497/720 atomic regions from SNP 149094 to 149694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,254 DEBUG Processing 415/679 atomic regions from SNP 124388 to 124988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,326 DEBUG Processing 61/565 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,363 DEBUG Processing 138/600 atomic regions from SNP 41223 to 41823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,402 DEBUG Processing 166/667 atomic regions from SNP 49665 to 50266 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,442 DEBUG Processing 498/720 atomic regions from SNP 149394 to 149994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,445 DEBUG Processing 416/679 atomic regions from SNP 124688 to 125288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,523 DEBUG Processing 62/565 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,537 DEBUG Processing 139/600 atomic regions from SNP 41523 to 42123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,593 DEBUG Processing 167/667 atomic regions from SNP 49966 to 50567 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,634 DEBUG Processing 499/720 atomic regions from SNP 149694 to 150294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,635 DEBUG Processing 417/679 atomic regions from SNP 124988 to 125588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,708 DEBUG Processing 140/600 atomic regions from SNP 41823 to 42423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,719 DEBUG Processing 63/565 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,784 DEBUG Processing 168/667 atomic regions from SNP 50267 to 50868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,828 DEBUG Processing 500/720 atomic regions from SNP 149994 to 150594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,839 DEBUG Processing 418/679 atomic regions from SNP 125288 to 125888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,882 DEBUG Processing 141/600 atomic regions from SNP 42123 to 42723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,923 DEBUG Processing 64/565 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,979 DEBUG Processing 169/667 atomic regions from SNP 50568 to 51169 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,030 DEBUG Processing 501/720 atomic regions from SNP 150294 to 150894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,041 DEBUG Processing 419/679 atomic regions from SNP 125588 to 126188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,071 DEBUG Processing 142/600 atomic regions from SNP 42423 to 43023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,118 DEBUG Processing 65/565 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,171 DEBUG Processing 170/667 atomic regions from SNP 50869 to 51470 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,234 DEBUG Processing 502/720 atomic regions from SNP 150594 to 151194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,235 DEBUG Processing 420/679 atomic regions from SNP 125888 to 126488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,274 DEBUG Processing 143/600 atomic regions from SNP 42723 to 43323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,308 DEBUG Processing 66/565 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,363 DEBUG Processing 171/667 atomic regions from SNP 51170 to 51771 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,428 DEBUG Processing 421/679 atomic regions from SNP 126188 to 126788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,437 DEBUG Processing 503/720 atomic regions from SNP 150894 to 151494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,464 DEBUG Processing 144/600 atomic regions from SNP 43023 to 43623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,506 DEBUG Processing 67/565 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,554 DEBUG Processing 172/667 atomic regions from SNP 51471 to 52072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,618 DEBUG Processing 422/679 atomic regions from SNP 126488 to 127088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,643 DEBUG Processing 145/600 atomic regions from SNP 43323 to 43923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,653 DEBUG Processing 504/720 atomic regions from SNP 151194 to 151794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,700 DEBUG Processing 68/565 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,745 DEBUG Processing 173/667 atomic regions from SNP 51772 to 52373 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,811 DEBUG Processing 423/679 atomic regions from SNP 126788 to 127388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,820 DEBUG Processing 146/600 atomic regions from SNP 43623 to 44223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,859 DEBUG Processing 505/720 atomic regions from SNP 151494 to 152094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,875 DEBUG Processing 69/565 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,936 DEBUG Processing 174/667 atomic regions from SNP 52073 to 52674 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,996 DEBUG Processing 147/600 atomic regions from SNP 43923 to 44523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,002 DEBUG Processing 424/679 atomic regions from SNP 127088 to 127688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,051 DEBUG Processing 70/565 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,055 DEBUG Processing 506/720 atomic regions from SNP 151794 to 152394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,128 DEBUG Processing 175/667 atomic regions from SNP 52374 to 52975 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,171 DEBUG Processing 148/600 atomic regions from SNP 44223 to 44823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,197 DEBUG Processing 425/679 atomic regions from SNP 127388 to 127988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,227 DEBUG Processing 71/565 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,282 DEBUG Processing 507/720 atomic regions from SNP 152094 to 152694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,319 DEBUG Processing 176/667 atomic regions from SNP 52675 to 53276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,348 DEBUG Processing 149/600 atomic regions from SNP 44523 to 45123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,393 DEBUG Processing 426/679 atomic regions from SNP 127688 to 128288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,405 DEBUG Processing 72/565 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,511 DEBUG Processing 508/720 atomic regions from SNP 152394 to 152994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,514 DEBUG Processing 177/667 atomic regions from SNP 52976 to 53577 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,529 DEBUG Processing 150/600 atomic regions from SNP 44823 to 45423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,583 DEBUG Processing 73/565 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,589 DEBUG Processing 427/679 atomic regions from SNP 127988 to 128588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,703 DEBUG Processing 178/667 atomic regions from SNP 53277 to 53878 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,708 DEBUG Processing 151/600 atomic regions from SNP 45123 to 45723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,732 DEBUG Processing 509/720 atomic regions from SNP 152694 to 153294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,758 DEBUG Processing 74/565 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,785 DEBUG Processing 428/679 atomic regions from SNP 128288 to 128888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,891 DEBUG Processing 152/600 atomic regions from SNP 45423 to 46023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,900 DEBUG Processing 179/667 atomic regions from SNP 53578 to 54179 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,933 DEBUG Processing 510/720 atomic regions from SNP 152994 to 153594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,935 DEBUG Processing 75/565 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,982 DEBUG Processing 429/679 atomic regions from SNP 128588 to 129188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,070 DEBUG Processing 153/600 atomic regions from SNP 45723 to 46323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,093 DEBUG Processing 180/667 atomic regions from SNP 53879 to 54480 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,112 DEBUG Processing 76/565 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,150 DEBUG Processing 511/720 atomic regions from SNP 153294 to 153894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,175 DEBUG Processing 430/679 atomic regions from SNP 128888 to 129488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,246 DEBUG Processing 154/600 atomic regions from SNP 46023 to 46623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,284 DEBUG Processing 181/667 atomic regions from SNP 54180 to 54781 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,286 DEBUG Processing 77/565 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,357 DEBUG Processing 512/720 atomic regions from SNP 153594 to 154194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,379 DEBUG Processing 431/679 atomic regions from SNP 129188 to 129788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,424 DEBUG Processing 155/600 atomic regions from SNP 46323 to 46923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,461 DEBUG Processing 78/565 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,477 DEBUG Processing 182/667 atomic regions from SNP 54481 to 55082 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,553 DEBUG Processing 513/720 atomic regions from SNP 153894 to 154494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,594 DEBUG Processing 432/679 atomic regions from SNP 129488 to 130088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,604 DEBUG Processing 156/600 atomic regions from SNP 46623 to 47223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,644 DEBUG Processing 79/565 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,673 DEBUG Processing 183/667 atomic regions from SNP 54782 to 55383 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,754 DEBUG Processing 514/720 atomic regions from SNP 154194 to 154794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,783 DEBUG Processing 157/600 atomic regions from SNP 46923 to 47523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,788 DEBUG Processing 433/679 atomic regions from SNP 129788 to 130388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,819 DEBUG Processing 80/565 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,865 DEBUG Processing 184/667 atomic regions from SNP 55083 to 55684 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,950 DEBUG Processing 515/720 atomic regions from SNP 154494 to 155094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,962 DEBUG Processing 158/600 atomic regions from SNP 47223 to 47823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,982 DEBUG Processing 434/679 atomic regions from SNP 130088 to 130688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,995 DEBUG Processing 81/565 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,057 DEBUG Processing 185/667 atomic regions from SNP 55384 to 55985 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,138 DEBUG Processing 159/600 atomic regions from SNP 47523 to 48123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,150 DEBUG Processing 516/720 atomic regions from SNP 154794 to 155394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,176 DEBUG Processing 82/565 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,178 DEBUG Processing 435/679 atomic regions from SNP 130388 to 130988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,248 DEBUG Processing 186/667 atomic regions from SNP 55685 to 56286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,313 DEBUG Processing 160/600 atomic regions from SNP 47823 to 48423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,366 DEBUG Processing 517/720 atomic regions from SNP 155094 to 155694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,370 DEBUG Processing 83/565 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,375 DEBUG Processing 436/679 atomic regions from SNP 130688 to 131288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,440 DEBUG Processing 187/667 atomic regions from SNP 55986 to 56586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,485 DEBUG Processing 161/600 atomic regions from SNP 48123 to 48723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,575 DEBUG Processing 518/720 atomic regions from SNP 155394 to 155994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,578 DEBUG Processing 437/679 atomic regions from SNP 130988 to 131588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,584 DEBUG Processing 84/565 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,634 DEBUG Processing 188/667 atomic regions from SNP 56286 to 56886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,663 DEBUG Processing 162/600 atomic regions from SNP 48423 to 49023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,771 DEBUG Processing 519/720 atomic regions from SNP 155694 to 156294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,777 DEBUG Processing 438/679 atomic regions from SNP 131288 to 131888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,785 DEBUG Processing 85/565 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,827 DEBUG Processing 189/667 atomic regions from SNP 56586 to 57186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,838 DEBUG Processing 163/600 atomic regions from SNP 48723 to 49323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,967 DEBUG Processing 520/720 atomic regions from SNP 155994 to 156594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,974 DEBUG Processing 439/679 atomic regions from SNP 131588 to 132188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,987 DEBUG Processing 86/565 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,015 DEBUG Processing 164/600 atomic regions from SNP 49023 to 49623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,020 DEBUG Processing 190/667 atomic regions from SNP 56886 to 57486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,164 DEBUG Processing 521/720 atomic regions from SNP 156294 to 156894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,172 DEBUG Processing 440/679 atomic regions from SNP 131888 to 132488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,192 DEBUG Processing 87/565 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,194 DEBUG Processing 165/600 atomic regions from SNP 49323 to 49923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,215 DEBUG Processing 191/667 atomic regions from SNP 57186 to 57786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,365 DEBUG Processing 522/720 atomic regions from SNP 156594 to 157194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,371 DEBUG Processing 441/679 atomic regions from SNP 132188 to 132788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,390 DEBUG Processing 166/600 atomic regions from SNP 49623 to 50223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,393 DEBUG Processing 88/565 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,410 DEBUG Processing 192/667 atomic regions from SNP 57486 to 58086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,565 DEBUG Processing 523/720 atomic regions from SNP 156894 to 157494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,571 DEBUG Processing 442/679 atomic regions from SNP 132488 to 133088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,600 DEBUG Processing 167/600 atomic regions from SNP 49923 to 50523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,605 DEBUG Processing 89/565 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,607 DEBUG Processing 193/667 atomic regions from SNP 57786 to 58386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,762 DEBUG Processing 524/720 atomic regions from SNP 157194 to 157794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,772 DEBUG Processing 443/679 atomic regions from SNP 132788 to 133388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,787 DEBUG Processing 168/600 atomic regions from SNP 50223 to 50823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,802 DEBUG Processing 194/667 atomic regions from SNP 58086 to 58686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,814 DEBUG Processing 90/565 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,960 DEBUG Processing 525/720 atomic regions from SNP 157494 to 158094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,966 DEBUG Processing 169/600 atomic regions from SNP 50523 to 51123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,973 DEBUG Processing 444/679 atomic regions from SNP 133088 to 133688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,999 DEBUG Processing 195/667 atomic regions from SNP 58386 to 58986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,022 DEBUG Processing 91/565 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,144 DEBUG Processing 170/600 atomic regions from SNP 50823 to 51423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,159 DEBUG Processing 526/720 atomic regions from SNP 157794 to 158394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,173 DEBUG Processing 445/679 atomic regions from SNP 133388 to 133988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,205 DEBUG Processing 196/667 atomic regions from SNP 58686 to 59286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,231 DEBUG Processing 92/565 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,320 DEBUG Processing 171/600 atomic regions from SNP 51123 to 51723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,357 DEBUG Processing 527/720 atomic regions from SNP 158094 to 158694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,370 DEBUG Processing 446/679 atomic regions from SNP 133688 to 134288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,406 DEBUG Processing 197/667 atomic regions from SNP 58986 to 59586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,431 DEBUG Processing 93/565 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,495 DEBUG Processing 172/600 atomic regions from SNP 51423 to 52023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,553 DEBUG Processing 528/720 atomic regions from SNP 158394 to 158994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,589 DEBUG Processing 447/679 atomic regions from SNP 133988 to 134588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,598 DEBUG Processing 198/667 atomic regions from SNP 59286 to 59886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,629 DEBUG Processing 94/565 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,669 DEBUG Processing 173/600 atomic regions from SNP 51723 to 52323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,751 DEBUG Processing 529/720 atomic regions from SNP 158694 to 159294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,792 DEBUG Processing 199/667 atomic regions from SNP 59586 to 60186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,801 DEBUG Processing 448/679 atomic regions from SNP 134288 to 134888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,823 DEBUG Processing 95/565 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,843 DEBUG Processing 174/600 atomic regions from SNP 52023 to 52623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,949 DEBUG Processing 530/720 atomic regions from SNP 158994 to 159594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,987 DEBUG Processing 200/667 atomic regions from SNP 59886 to 60486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,999 DEBUG Processing 449/679 atomic regions from SNP 134588 to 135188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,004 DEBUG Processing 96/565 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,017 DEBUG Processing 175/600 atomic regions from SNP 52323 to 52923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,147 DEBUG Processing 531/720 atomic regions from SNP 159294 to 159894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,184 DEBUG Processing 201/667 atomic regions from SNP 60186 to 60786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,187 DEBUG Processing 97/565 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,195 DEBUG Processing 176/600 atomic regions from SNP 52623 to 53223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,199 DEBUG Processing 450/679 atomic regions from SNP 134888 to 135488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,349 DEBUG Processing 532/720 atomic regions from SNP 159594 to 160194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,367 DEBUG Processing 98/565 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,374 DEBUG Processing 177/600 atomic regions from SNP 52923 to 53523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,388 DEBUG Processing 202/667 atomic regions from SNP 60486 to 61086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,403 DEBUG Processing 451/679 atomic regions from SNP 135188 to 135788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,544 DEBUG Processing 99/565 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,551 DEBUG Processing 533/720 atomic regions from SNP 159894 to 160494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,553 DEBUG Processing 178/600 atomic regions from SNP 53223 to 53823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,585 DEBUG Processing 203/667 atomic regions from SNP 60786 to 61386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,631 DEBUG Processing 452/679 atomic regions from SNP 135488 to 136088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,722 DEBUG Processing 100/565 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,732 DEBUG Processing 179/600 atomic regions from SNP 53523 to 54123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,753 DEBUG Processing 534/720 atomic regions from SNP 160194 to 160794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,778 DEBUG Processing 204/667 atomic regions from SNP 61086 to 61686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,856 DEBUG Processing 453/679 atomic regions from SNP 135788 to 136388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,899 DEBUG Processing 101/565 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,911 DEBUG Processing 180/600 atomic regions from SNP 53823 to 54423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,956 DEBUG Processing 535/720 atomic regions from SNP 160494 to 161094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,968 DEBUG Processing 205/667 atomic regions from SNP 61386 to 61986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,045 DEBUG Processing 454/679 atomic regions from SNP 136088 to 136688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,077 DEBUG Processing 102/565 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,088 DEBUG Processing 181/600 atomic regions from SNP 54123 to 54723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,152 DEBUG Processing 536/720 atomic regions from SNP 160794 to 161394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,158 DEBUG Processing 206/667 atomic regions from SNP 61686 to 62286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,236 DEBUG Processing 455/679 atomic regions from SNP 136388 to 136988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,263 DEBUG Processing 182/600 atomic regions from SNP 54423 to 55023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,270 DEBUG Processing 103/565 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,348 DEBUG Processing 537/720 atomic regions from SNP 161094 to 161694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,349 DEBUG Processing 207/667 atomic regions from SNP 61986 to 62586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,429 DEBUG Processing 456/679 atomic regions from SNP 136688 to 137288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,450 DEBUG Processing 183/600 atomic regions from SNP 54723 to 55323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,484 DEBUG Processing 104/565 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,540 DEBUG Processing 208/667 atomic regions from SNP 62286 to 62886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,547 DEBUG Processing 538/720 atomic regions from SNP 161394 to 161994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,626 DEBUG Processing 457/679 atomic regions from SNP 136988 to 137588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,645 DEBUG Processing 184/600 atomic regions from SNP 55023 to 55623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,697 DEBUG Processing 105/565 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,731 DEBUG Processing 209/667 atomic regions from SNP 62586 to 63186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,746 DEBUG Processing 539/720 atomic regions from SNP 161694 to 162294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,820 DEBUG Processing 185/600 atomic regions from SNP 55323 to 55923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,822 DEBUG Processing 458/679 atomic regions from SNP 137288 to 137888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,873 DEBUG Processing 106/565 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,927 DEBUG Processing 210/667 atomic regions from SNP 62886 to 63486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,943 DEBUG Processing 540/720 atomic regions from SNP 161994 to 162594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,997 DEBUG Processing 186/600 atomic regions from SNP 55623 to 56223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,018 DEBUG Processing 459/679 atomic regions from SNP 137588 to 138188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,052 DEBUG Processing 107/565 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,120 DEBUG Processing 211/667 atomic regions from SNP 63186 to 63786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,143 DEBUG Processing 541/720 atomic regions from SNP 162294 to 162894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,176 DEBUG Processing 187/600 atomic regions from SNP 55923 to 56523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,214 DEBUG Processing 460/679 atomic regions from SNP 137888 to 138488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,247 DEBUG Processing 108/565 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,316 DEBUG Processing 212/667 atomic regions from SNP 63486 to 64086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,343 DEBUG Processing 542/720 atomic regions from SNP 162594 to 163194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,373 DEBUG Processing 188/600 atomic regions from SNP 56223 to 56823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,407 DEBUG Processing 461/679 atomic regions from SNP 138188 to 138788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,455 DEBUG Processing 109/565 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,506 DEBUG Processing 213/667 atomic regions from SNP 63786 to 64386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,541 DEBUG Processing 543/720 atomic regions from SNP 162894 to 163494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,572 DEBUG Processing 189/600 atomic regions from SNP 56523 to 57123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,601 DEBUG Processing 462/679 atomic regions from SNP 138488 to 139088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,637 DEBUG Processing 110/565 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,698 DEBUG Processing 214/667 atomic regions from SNP 64086 to 64686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,738 DEBUG Processing 544/720 atomic regions from SNP 163194 to 163794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,750 DEBUG Processing 190/600 atomic regions from SNP 56823 to 57423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,816 DEBUG Processing 463/679 atomic regions from SNP 138788 to 139388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,825 DEBUG Processing 111/565 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,892 DEBUG Processing 215/667 atomic regions from SNP 64386 to 64986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,931 DEBUG Processing 191/600 atomic regions from SNP 57123 to 57723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,937 DEBUG Processing 545/720 atomic regions from SNP 163494 to 164094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,013 DEBUG Processing 112/565 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,033 DEBUG Processing 464/679 atomic regions from SNP 139088 to 139688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,083 DEBUG Processing 216/667 atomic regions from SNP 64686 to 65286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,110 DEBUG Processing 192/600 atomic regions from SNP 57423 to 58023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,137 DEBUG Processing 546/720 atomic regions from SNP 163794 to 164394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,207 DEBUG Processing 113/565 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,244 DEBUG Processing 465/679 atomic regions from SNP 139388 to 139988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,277 DEBUG Processing 217/667 atomic regions from SNP 64986 to 65586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,297 DEBUG Processing 193/600 atomic regions from SNP 57723 to 58323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,337 DEBUG Processing 547/720 atomic regions from SNP 164094 to 164694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,392 DEBUG Processing 114/565 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,441 DEBUG Processing 466/679 atomic regions from SNP 139688 to 140288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,469 DEBUG Processing 218/667 atomic regions from SNP 65286 to 65886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,500 DEBUG Processing 194/600 atomic regions from SNP 58023 to 58623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,559 DEBUG Processing 548/720 atomic regions from SNP 164394 to 164994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,584 DEBUG Processing 115/565 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,638 DEBUG Processing 467/679 atomic regions from SNP 139988 to 140588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,667 DEBUG Processing 219/667 atomic regions from SNP 65586 to 66186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,717 DEBUG Processing 195/600 atomic regions from SNP 58323 to 58923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,786 DEBUG Processing 116/565 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,790 DEBUG Processing 549/720 atomic regions from SNP 164694 to 165294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,837 DEBUG Processing 468/679 atomic regions from SNP 140288 to 140888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,865 DEBUG Processing 220/667 atomic regions from SNP 65886 to 66486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,930 DEBUG Processing 196/600 atomic regions from SNP 58623 to 59223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,962 DEBUG Processing 117/565 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,999 DEBUG Processing 550/720 atomic regions from SNP 164994 to 165594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,035 DEBUG Processing 469/679 atomic regions from SNP 140588 to 141188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,057 DEBUG Processing 221/667 atomic regions from SNP 66186 to 66786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,142 DEBUG Processing 197/600 atomic regions from SNP 58923 to 59523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,158 DEBUG Processing 118/565 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,204 DEBUG Processing 551/720 atomic regions from SNP 165294 to 165894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,231 DEBUG Processing 470/679 atomic regions from SNP 140888 to 141488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,250 DEBUG Processing 222/667 atomic regions from SNP 66486 to 67086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,342 DEBUG Processing 198/600 atomic regions from SNP 59223 to 59823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,351 DEBUG Processing 119/565 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,405 DEBUG Processing 552/720 atomic regions from SNP 165594 to 166194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,431 DEBUG Processing 471/679 atomic regions from SNP 141188 to 141788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,446 DEBUG Processing 223/667 atomic regions from SNP 66786 to 67386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,535 DEBUG Processing 199/600 atomic regions from SNP 59523 to 60123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,547 DEBUG Processing 120/565 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,624 DEBUG Processing 472/679 atomic regions from SNP 141488 to 142088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,627 DEBUG Processing 553/720 atomic regions from SNP 165894 to 166494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,639 DEBUG Processing 224/667 atomic regions from SNP 67086 to 67686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,711 DEBUG Processing 200/600 atomic regions from SNP 59823 to 60423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,724 DEBUG Processing 121/565 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,820 DEBUG Processing 473/679 atomic regions from SNP 141788 to 142388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,833 DEBUG Processing 225/667 atomic regions from SNP 67386 to 67986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,840 DEBUG Processing 554/720 atomic regions from SNP 166194 to 166794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,887 DEBUG Processing 201/600 atomic regions from SNP 60123 to 60723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,898 DEBUG Processing 122/565 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,016 DEBUG Processing 474/679 atomic regions from SNP 142088 to 142688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,029 DEBUG Processing 226/667 atomic regions from SNP 67686 to 68286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,065 DEBUG Processing 202/600 atomic regions from SNP 60423 to 61023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,066 DEBUG Processing 555/720 atomic regions from SNP 166494 to 167094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,074 DEBUG Processing 123/565 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,214 DEBUG Processing 475/679 atomic regions from SNP 142388 to 142988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,226 DEBUG Processing 227/667 atomic regions from SNP 67986 to 68586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,246 DEBUG Processing 203/600 atomic regions from SNP 60723 to 61323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,252 DEBUG Processing 124/565 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,287 DEBUG Processing 556/720 atomic regions from SNP 166794 to 167394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,417 DEBUG Processing 476/679 atomic regions from SNP 142688 to 143288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,423 DEBUG Processing 228/667 atomic regions from SNP 68286 to 68886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,424 DEBUG Processing 204/600 atomic regions from SNP 61023 to 61623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,431 DEBUG Processing 125/565 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,500 DEBUG Processing 557/720 atomic regions from SNP 167094 to 167694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,609 DEBUG Processing 205/600 atomic regions from SNP 61323 to 61923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,609 DEBUG Processing 126/565 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,617 DEBUG Processing 229/667 atomic regions from SNP 68586 to 69186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,617 DEBUG Processing 477/679 atomic regions from SNP 142988 to 143588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,707 DEBUG Processing 558/720 atomic regions from SNP 167394 to 167994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,788 DEBUG Processing 127/565 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,800 DEBUG Processing 206/600 atomic regions from SNP 61623 to 62223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,812 DEBUG Processing 230/667 atomic regions from SNP 68886 to 69486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,815 DEBUG Processing 478/679 atomic regions from SNP 143288 to 143888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,917 DEBUG Processing 559/720 atomic regions from SNP 167694 to 168294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,964 DEBUG Processing 128/565 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,004 DEBUG Processing 207/600 atomic regions from SNP 61923 to 62523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,008 DEBUG Processing 231/667 atomic regions from SNP 69186 to 69786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,013 DEBUG Processing 479/679 atomic regions from SNP 143588 to 144188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,127 DEBUG Processing 560/720 atomic regions from SNP 167994 to 168594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,141 DEBUG Processing 129/565 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,204 DEBUG Processing 232/667 atomic regions from SNP 69486 to 70086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,211 DEBUG Processing 208/600 atomic regions from SNP 62223 to 62823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,212 DEBUG Processing 480/679 atomic regions from SNP 143888 to 144488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,317 DEBUG Processing 130/565 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,323 DEBUG Processing 561/720 atomic regions from SNP 168294 to 168894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,398 DEBUG Processing 233/667 atomic regions from SNP 69786 to 70386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,411 DEBUG Processing 481/679 atomic regions from SNP 144188 to 144788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,413 DEBUG Processing 209/600 atomic regions from SNP 62523 to 63123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,494 DEBUG Processing 131/565 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,517 DEBUG Processing 562/720 atomic regions from SNP 168594 to 169194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,592 DEBUG Processing 210/600 atomic regions from SNP 62823 to 63423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,593 DEBUG Processing 234/667 atomic regions from SNP 70086 to 70686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,611 DEBUG Processing 482/679 atomic regions from SNP 144488 to 145088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,669 DEBUG Processing 132/565 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,712 DEBUG Processing 563/720 atomic regions from SNP 168894 to 169494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,766 DEBUG Processing 211/600 atomic regions from SNP 63123 to 63723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,786 DEBUG Processing 235/667 atomic regions from SNP 70386 to 70986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,811 DEBUG Processing 483/679 atomic regions from SNP 144788 to 145388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,845 DEBUG Processing 133/565 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,913 DEBUG Processing 564/720 atomic regions from SNP 169194 to 169794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,943 DEBUG Processing 212/600 atomic regions from SNP 63423 to 64023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,982 DEBUG Processing 236/667 atomic regions from SNP 70686 to 71286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,013 DEBUG Processing 484/679 atomic regions from SNP 145088 to 145688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,022 DEBUG Processing 134/565 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,119 DEBUG Processing 213/600 atomic regions from SNP 63723 to 64323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,132 DEBUG Processing 565/720 atomic regions from SNP 169494 to 170094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,176 DEBUG Processing 237/667 atomic regions from SNP 70986 to 71586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,200 DEBUG Processing 135/565 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,216 DEBUG Processing 485/679 atomic regions from SNP 145388 to 145988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,293 DEBUG Processing 214/600 atomic regions from SNP 64023 to 64623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,353 DEBUG Processing 566/720 atomic regions from SNP 169794 to 170394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,370 DEBUG Processing 238/667 atomic regions from SNP 71286 to 71886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,379 DEBUG Processing 136/565 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,417 DEBUG Processing 486/679 atomic regions from SNP 145688 to 146288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,468 DEBUG Processing 215/600 atomic regions from SNP 64323 to 64923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,557 DEBUG Processing 137/565 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,566 DEBUG Processing 239/667 atomic regions from SNP 71586 to 72186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,576 DEBUG Processing 567/720 atomic regions from SNP 170094 to 170694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,617 DEBUG Processing 487/679 atomic regions from SNP 145988 to 146588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,642 DEBUG Processing 216/600 atomic regions from SNP 64623 to 65223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,736 DEBUG Processing 138/565 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,758 DEBUG Processing 240/667 atomic regions from SNP 71886 to 72486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,804 DEBUG Processing 568/720 atomic regions from SNP 170394 to 170994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,816 DEBUG Processing 488/679 atomic regions from SNP 146288 to 146888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,819 DEBUG Processing 217/600 atomic regions from SNP 64923 to 65523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,911 DEBUG Processing 139/565 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,951 DEBUG Processing 241/667 atomic regions from SNP 72186 to 72786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,997 DEBUG Processing 218/600 atomic regions from SNP 65223 to 65823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,014 DEBUG Processing 489/679 atomic regions from SNP 146588 to 147188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,033 DEBUG Processing 569/720 atomic regions from SNP 170694 to 171294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,085 DEBUG Processing 140/565 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,142 DEBUG Processing 242/667 atomic regions from SNP 72486 to 73086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,173 DEBUG Processing 219/600 atomic regions from SNP 65523 to 66123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,213 DEBUG Processing 490/679 atomic regions from SNP 146888 to 147488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,259 DEBUG Processing 141/565 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,261 DEBUG Processing 570/720 atomic regions from SNP 170994 to 171594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,333 DEBUG Processing 243/667 atomic regions from SNP 72786 to 73386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,346 DEBUG Processing 220/600 atomic regions from SNP 65823 to 66423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,413 DEBUG Processing 491/679 atomic regions from SNP 147188 to 147788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,433 DEBUG Processing 142/565 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,487 DEBUG Processing 571/720 atomic regions from SNP 171294 to 171894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,518 DEBUG Processing 221/600 atomic regions from SNP 66123 to 66723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,523 DEBUG Processing 244/667 atomic regions from SNP 73086 to 73686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,609 DEBUG Processing 143/565 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,612 DEBUG Processing 492/679 atomic regions from SNP 147488 to 148088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,691 DEBUG Processing 222/600 atomic regions from SNP 66423 to 67023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,707 DEBUG Processing 572/720 atomic regions from SNP 171594 to 172194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,713 DEBUG Processing 245/667 atomic regions from SNP 73386 to 73986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,788 DEBUG Processing 144/565 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,811 DEBUG Processing 493/679 atomic regions from SNP 147788 to 148388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,865 DEBUG Processing 223/600 atomic regions from SNP 66723 to 67323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,903 DEBUG Processing 246/667 atomic regions from SNP 73686 to 74286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,922 DEBUG Processing 573/720 atomic regions from SNP 171894 to 172494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,965 DEBUG Processing 145/565 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,009 DEBUG Processing 494/679 atomic regions from SNP 148088 to 148688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,040 DEBUG Processing 224/600 atomic regions from SNP 67023 to 67623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,094 DEBUG Processing 247/667 atomic regions from SNP 73986 to 74586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,132 DEBUG Processing 574/720 atomic regions from SNP 172194 to 172794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,141 DEBUG Processing 146/565 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,203 DEBUG Processing 495/679 atomic regions from SNP 148388 to 148988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,215 DEBUG Processing 225/600 atomic regions from SNP 67323 to 67923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,286 DEBUG Processing 248/667 atomic regions from SNP 74286 to 74886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,315 DEBUG Processing 147/565 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,343 DEBUG Processing 575/720 atomic regions from SNP 172494 to 173094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,394 DEBUG Processing 496/679 atomic regions from SNP 148688 to 149288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,398 DEBUG Processing 226/600 atomic regions from SNP 67623 to 68223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,476 DEBUG Processing 249/667 atomic regions from SNP 74586 to 75186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,492 DEBUG Processing 148/565 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,558 DEBUG Processing 576/720 atomic regions from SNP 172794 to 173394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,576 DEBUG Processing 227/600 atomic regions from SNP 67923 to 68523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,587 DEBUG Processing 497/679 atomic regions from SNP 148988 to 149588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,668 DEBUG Processing 149/565 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,669 DEBUG Processing 250/667 atomic regions from SNP 74886 to 75486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,752 DEBUG Processing 228/600 atomic regions from SNP 68223 to 68823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,781 DEBUG Processing 577/720 atomic regions from SNP 173094 to 173694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,781 DEBUG Processing 498/679 atomic regions from SNP 149288 to 149888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,844 DEBUG Processing 150/565 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,859 DEBUG Processing 251/667 atomic regions from SNP 75186 to 75786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,926 DEBUG Processing 229/600 atomic regions from SNP 68523 to 69123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,976 DEBUG Processing 499/679 atomic regions from SNP 149588 to 150188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,008 DEBUG Processing 578/720 atomic regions from SNP 173394 to 173994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,020 DEBUG Processing 151/565 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,052 DEBUG Processing 252/667 atomic regions from SNP 75486 to 76086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,097 DEBUG Processing 230/600 atomic regions from SNP 68823 to 69423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,168 DEBUG Processing 500/679 atomic regions from SNP 149888 to 150488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,199 DEBUG Processing 152/565 atomic regions from SNP 45451 to 46052 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,222 DEBUG Processing 579/720 atomic regions from SNP 173694 to 174294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,243 DEBUG Processing 253/667 atomic regions from SNP 75786 to 76386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,272 DEBUG Processing 231/600 atomic regions from SNP 69123 to 69723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,362 DEBUG Processing 501/679 atomic regions from SNP 150188 to 150788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,377 DEBUG Processing 153/565 atomic regions from SNP 45752 to 46353 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,419 DEBUG Processing 580/720 atomic regions from SNP 173994 to 174594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,445 DEBUG Processing 254/667 atomic regions from SNP 76086 to 76686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,446 DEBUG Processing 232/600 atomic regions from SNP 69423 to 70023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,555 DEBUG Processing 502/679 atomic regions from SNP 150488 to 151088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,555 DEBUG Processing 154/565 atomic regions from SNP 46053 to 46654 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,619 DEBUG Processing 581/720 atomic regions from SNP 174294 to 174894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,624 DEBUG Processing 233/600 atomic regions from SNP 69723 to 70323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,636 DEBUG Processing 255/667 atomic regions from SNP 76386 to 76986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,731 DEBUG Processing 155/565 atomic regions from SNP 46354 to 46955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,748 DEBUG Processing 503/679 atomic regions from SNP 150788 to 151388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,804 DEBUG Processing 234/600 atomic regions from SNP 70023 to 70623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,816 DEBUG Processing 582/720 atomic regions from SNP 174594 to 175194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,828 DEBUG Processing 256/667 atomic regions from SNP 76686 to 77286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,905 DEBUG Processing 156/565 atomic regions from SNP 46655 to 47256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,941 DEBUG Processing 504/679 atomic regions from SNP 151088 to 151688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,982 DEBUG Processing 235/600 atomic regions from SNP 70323 to 70923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,013 DEBUG Processing 583/720 atomic regions from SNP 174894 to 175494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,020 DEBUG Processing 257/667 atomic regions from SNP 76986 to 77586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,079 DEBUG Processing 157/565 atomic regions from SNP 46956 to 47557 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,150 DEBUG Processing 505/679 atomic regions from SNP 151388 to 151988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,159 DEBUG Processing 236/600 atomic regions from SNP 70623 to 71223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,209 DEBUG Processing 584/720 atomic regions from SNP 175194 to 175794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,212 DEBUG Processing 258/667 atomic regions from SNP 77286 to 77886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,254 DEBUG Processing 158/565 atomic regions from SNP 47257 to 47858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,338 DEBUG Processing 237/600 atomic regions from SNP 70923 to 71523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,366 DEBUG Processing 506/679 atomic regions from SNP 151688 to 152288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,405 DEBUG Processing 585/720 atomic regions from SNP 175494 to 176094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,407 DEBUG Processing 259/667 atomic regions from SNP 77586 to 78186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,431 DEBUG Processing 159/565 atomic regions from SNP 47558 to 48159 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,514 DEBUG Processing 238/600 atomic regions from SNP 71223 to 71823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,574 DEBUG Processing 507/679 atomic regions from SNP 151988 to 152588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,605 DEBUG Processing 260/667 atomic regions from SNP 77886 to 78486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,608 DEBUG Processing 160/565 atomic regions from SNP 47859 to 48460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,621 DEBUG Processing 586/720 atomic regions from SNP 175794 to 176394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,690 DEBUG Processing 239/600 atomic regions from SNP 71523 to 72123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,787 DEBUG Processing 508/679 atomic regions from SNP 152288 to 152888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,788 DEBUG Processing 161/565 atomic regions from SNP 48160 to 48761 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,812 DEBUG Processing 261/667 atomic regions from SNP 78186 to 78786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,848 DEBUG Processing 587/720 atomic regions from SNP 176094 to 176694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,866 DEBUG Processing 240/600 atomic regions from SNP 71823 to 72423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,967 DEBUG Processing 162/565 atomic regions from SNP 48461 to 49062 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,002 DEBUG Processing 509/679 atomic regions from SNP 152588 to 153188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,030 DEBUG Processing 262/667 atomic regions from SNP 78486 to 79086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,047 DEBUG Processing 241/600 atomic regions from SNP 72123 to 72723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,069 DEBUG Processing 588/720 atomic regions from SNP 176394 to 176994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,142 DEBUG Processing 163/565 atomic regions from SNP 48762 to 49363 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,196 DEBUG Processing 510/679 atomic regions from SNP 152888 to 153488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,239 DEBUG Processing 242/600 atomic regions from SNP 72423 to 73023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,257 DEBUG Processing 263/667 atomic regions from SNP 78786 to 79386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,293 DEBUG Processing 589/720 atomic regions from SNP 176694 to 177294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,324 DEBUG Processing 164/565 atomic regions from SNP 49063 to 49664 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,392 DEBUG Processing 511/679 atomic regions from SNP 153188 to 153788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,442 DEBUG Processing 243/600 atomic regions from SNP 72723 to 73323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,472 DEBUG Processing 264/667 atomic regions from SNP 79086 to 79686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,510 DEBUG Processing 590/720 atomic regions from SNP 176994 to 177594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,515 DEBUG Processing 165/565 atomic regions from SNP 49364 to 49965 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,586 DEBUG Processing 512/679 atomic regions from SNP 153488 to 154088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,625 DEBUG Processing 244/600 atomic regions from SNP 73023 to 73623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,677 DEBUG Processing 265/667 atomic regions from SNP 79386 to 79986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,694 DEBUG Processing 166/565 atomic regions from SNP 49665 to 50266 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,732 DEBUG Processing 591/720 atomic regions from SNP 177294 to 177894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,778 DEBUG Processing 513/679 atomic regions from SNP 153788 to 154388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,796 DEBUG Processing 245/600 atomic regions from SNP 73323 to 73923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,871 DEBUG Processing 266/667 atomic regions from SNP 79686 to 80286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,871 DEBUG Processing 167/565 atomic regions from SNP 49966 to 50567 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,962 DEBUG Processing 592/720 atomic regions from SNP 177594 to 178194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,969 DEBUG Processing 246/600 atomic regions from SNP 73623 to 74223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,989 DEBUG Processing 514/679 atomic regions from SNP 154088 to 154688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,054 DEBUG Processing 168/565 atomic regions from SNP 50267 to 50868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,070 DEBUG Processing 267/667 atomic regions from SNP 79986 to 80586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,149 DEBUG Processing 247/600 atomic regions from SNP 73923 to 74523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,189 DEBUG Processing 593/720 atomic regions from SNP 177894 to 178494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,204 DEBUG Processing 515/679 atomic regions from SNP 154388 to 154988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,239 DEBUG Processing 169/565 atomic regions from SNP 50568 to 51169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,271 DEBUG Processing 268/667 atomic regions from SNP 80286 to 80886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,334 DEBUG Processing 248/600 atomic regions from SNP 74223 to 74823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,418 DEBUG Processing 594/720 atomic regions from SNP 178194 to 178794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,429 DEBUG Processing 170/565 atomic regions from SNP 50869 to 51470 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,432 DEBUG Processing 516/679 atomic regions from SNP 154688 to 155288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,466 DEBUG Processing 269/667 atomic regions from SNP 80586 to 81186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,517 DEBUG Processing 249/600 atomic regions from SNP 74523 to 75123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,620 DEBUG Processing 171/565 atomic regions from SNP 51170 to 51771 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,643 DEBUG Processing 595/720 atomic regions from SNP 178494 to 179094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,649 DEBUG Processing 517/679 atomic regions from SNP 154988 to 155588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,661 DEBUG Processing 270/667 atomic regions from SNP 80886 to 81486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,697 DEBUG Processing 250/600 atomic regions from SNP 74823 to 75423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,797 DEBUG Processing 172/565 atomic regions from SNP 51471 to 52072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,846 DEBUG Processing 596/720 atomic regions from SNP 178794 to 179394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,848 DEBUG Processing 518/679 atomic regions from SNP 155288 to 155888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,857 DEBUG Processing 271/667 atomic regions from SNP 81186 to 81786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,876 DEBUG Processing 251/600 atomic regions from SNP 75123 to 75723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,994 DEBUG Processing 173/565 atomic regions from SNP 51772 to 52373 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,047 DEBUG Processing 519/679 atomic regions from SNP 155588 to 156188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,051 DEBUG Processing 272/667 atomic regions from SNP 81486 to 82086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,059 DEBUG Processing 252/600 atomic regions from SNP 75423 to 76023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,064 DEBUG Processing 597/720 atomic regions from SNP 179094 to 179694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,194 DEBUG Processing 174/565 atomic regions from SNP 52073 to 52674 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,244 DEBUG Processing 253/600 atomic regions from SNP 75723 to 76323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,247 DEBUG Processing 273/667 atomic regions from SNP 81786 to 82386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,264 DEBUG Processing 520/679 atomic regions from SNP 155888 to 156488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,292 DEBUG Processing 598/720 atomic regions from SNP 179394 to 179994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,384 DEBUG Processing 175/565 atomic regions from SNP 52374 to 52975 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,424 DEBUG Processing 254/600 atomic regions from SNP 76023 to 76623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,439 DEBUG Processing 274/667 atomic regions from SNP 82086 to 82686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,474 DEBUG Processing 521/679 atomic regions from SNP 156188 to 156788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,519 DEBUG Processing 599/720 atomic regions from SNP 179694 to 180294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,584 DEBUG Processing 176/565 atomic regions from SNP 52675 to 53276 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,605 DEBUG Processing 255/600 atomic regions from SNP 76323 to 76923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,634 DEBUG Processing 275/667 atomic regions from SNP 82386 to 82986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,671 DEBUG Processing 522/679 atomic regions from SNP 156488 to 157088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,743 DEBUG Processing 600/720 atomic regions from SNP 179994 to 180594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,783 DEBUG Processing 256/600 atomic regions from SNP 76623 to 77223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,793 DEBUG Processing 177/565 atomic regions from SNP 52976 to 53577 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,826 DEBUG Processing 276/667 atomic regions from SNP 82686 to 83286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,866 DEBUG Processing 523/679 atomic regions from SNP 156788 to 157388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,942 DEBUG Processing 601/720 atomic regions from SNP 180294 to 180894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,963 DEBUG Processing 257/600 atomic regions from SNP 76923 to 77523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,996 DEBUG Processing 178/565 atomic regions from SNP 53277 to 53878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,019 DEBUG Processing 277/667 atomic regions from SNP 82986 to 83586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,058 DEBUG Processing 524/679 atomic regions from SNP 157088 to 157688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,140 DEBUG Processing 602/720 atomic regions from SNP 180594 to 181194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,144 DEBUG Processing 258/600 atomic regions from SNP 77223 to 77823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,193 DEBUG Processing 179/565 atomic regions from SNP 53578 to 54179 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,215 DEBUG Processing 278/667 atomic regions from SNP 83286 to 83886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,251 DEBUG Processing 525/679 atomic regions from SNP 157388 to 157988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,321 DEBUG Processing 259/600 atomic regions from SNP 77523 to 78123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,352 DEBUG Processing 603/720 atomic regions from SNP 180894 to 181494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,383 DEBUG Processing 180/565 atomic regions from SNP 53879 to 54480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,408 DEBUG Processing 279/667 atomic regions from SNP 83586 to 84186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,447 DEBUG Processing 526/679 atomic regions from SNP 157688 to 158288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,503 DEBUG Processing 260/600 atomic regions from SNP 77823 to 78423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,570 DEBUG Processing 181/565 atomic regions from SNP 54180 to 54780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,578 DEBUG Processing 604/720 atomic regions from SNP 181194 to 181794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,602 DEBUG Processing 280/667 atomic regions from SNP 83886 to 84486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,643 DEBUG Processing 527/679 atomic regions from SNP 157988 to 158588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,686 DEBUG Processing 261/600 atomic regions from SNP 78123 to 78723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,761 DEBUG Processing 182/565 atomic regions from SNP 54480 to 55080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,796 DEBUG Processing 605/720 atomic regions from SNP 181494 to 182094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,825 DEBUG Processing 281/667 atomic regions from SNP 84186 to 84786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,836 DEBUG Processing 528/679 atomic regions from SNP 158288 to 158888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,868 DEBUG Processing 262/600 atomic regions from SNP 78423 to 79023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,942 DEBUG Processing 183/565 atomic regions from SNP 54780 to 55380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,991 DEBUG Processing 606/720 atomic regions from SNP 181794 to 182394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,032 DEBUG Processing 529/679 atomic regions from SNP 158588 to 159188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,038 DEBUG Processing 282/667 atomic regions from SNP 84486 to 85086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,053 DEBUG Processing 263/600 atomic regions from SNP 78723 to 79323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,116 DEBUG Processing 184/565 atomic regions from SNP 55080 to 55680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,186 DEBUG Processing 607/720 atomic regions from SNP 182094 to 182694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,228 DEBUG Processing 530/679 atomic regions from SNP 158888 to 159488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,234 DEBUG Processing 264/600 atomic regions from SNP 79023 to 79623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,253 DEBUG Processing 283/667 atomic regions from SNP 84786 to 85386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,291 DEBUG Processing 185/565 atomic regions from SNP 55380 to 55980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,379 DEBUG Processing 608/720 atomic regions from SNP 182394 to 182994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,417 DEBUG Processing 265/600 atomic regions from SNP 79323 to 79923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,425 DEBUG Processing 531/679 atomic regions from SNP 159188 to 159788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,470 DEBUG Processing 284/667 atomic regions from SNP 85086 to 85686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,484 DEBUG Processing 186/565 atomic regions from SNP 55680 to 56280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,580 DEBUG Processing 609/720 atomic regions from SNP 182694 to 183294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,599 DEBUG Processing 266/600 atomic regions from SNP 79623 to 80223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,621 DEBUG Processing 532/679 atomic regions from SNP 159488 to 160088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,679 DEBUG Processing 187/565 atomic regions from SNP 55980 to 56580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,680 DEBUG Processing 285/667 atomic regions from SNP 85386 to 85986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,778 DEBUG Processing 610/720 atomic regions from SNP 182994 to 183594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,779 DEBUG Processing 267/600 atomic regions from SNP 79923 to 80523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,822 DEBUG Processing 533/679 atomic regions from SNP 159788 to 160388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,857 DEBUG Processing 188/565 atomic regions from SNP 56280 to 56880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,876 DEBUG Processing 286/667 atomic regions from SNP 85686 to 86286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,970 DEBUG Processing 268/600 atomic regions from SNP 80223 to 80823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,988 DEBUG Processing 611/720 atomic regions from SNP 183294 to 183894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,044 DEBUG Processing 189/565 atomic regions from SNP 56580 to 57180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,046 DEBUG Processing 534/679 atomic regions from SNP 160088 to 160688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,082 DEBUG Processing 287/667 atomic regions from SNP 85986 to 86586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,156 DEBUG Processing 269/600 atomic regions from SNP 80523 to 81123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,191 DEBUG Processing 612/720 atomic regions from SNP 183594 to 184194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,224 DEBUG Processing 190/565 atomic regions from SNP 56880 to 57480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,267 DEBUG Processing 535/679 atomic regions from SNP 160388 to 160988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,279 DEBUG Processing 288/667 atomic regions from SNP 86286 to 86886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,338 DEBUG Processing 270/600 atomic regions from SNP 80823 to 81423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,391 DEBUG Processing 613/720 atomic regions from SNP 183894 to 184494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,402 DEBUG Processing 191/565 atomic regions from SNP 57180 to 57780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,465 DEBUG Processing 536/679 atomic regions from SNP 160688 to 161288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,475 DEBUG Processing 289/667 atomic regions from SNP 86586 to 87186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,517 DEBUG Processing 271/600 atomic regions from SNP 81123 to 81723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,580 DEBUG Processing 192/565 atomic regions from SNP 57480 to 58080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,588 DEBUG Processing 614/720 atomic regions from SNP 184194 to 184794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,664 DEBUG Processing 537/679 atomic regions from SNP 160988 to 161588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,679 DEBUG Processing 290/667 atomic regions from SNP 86886 to 87486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,702 DEBUG Processing 272/600 atomic regions from SNP 81423 to 82023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,756 DEBUG Processing 193/565 atomic regions from SNP 57780 to 58380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,788 DEBUG Processing 615/720 atomic regions from SNP 184494 to 185094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,862 DEBUG Processing 538/679 atomic regions from SNP 161288 to 161888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,876 DEBUG Processing 291/667 atomic regions from SNP 87186 to 87786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,886 DEBUG Processing 273/600 atomic regions from SNP 81723 to 82323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,932 DEBUG Processing 194/565 atomic regions from SNP 58080 to 58680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,986 DEBUG Processing 616/720 atomic regions from SNP 184794 to 185394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,058 DEBUG Processing 539/679 atomic regions from SNP 161588 to 162188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,069 DEBUG Processing 274/600 atomic regions from SNP 82023 to 82623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,074 DEBUG Processing 292/667 atomic regions from SNP 87486 to 88086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,111 DEBUG Processing 195/565 atomic regions from SNP 58380 to 58980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,212 DEBUG Processing 617/720 atomic regions from SNP 185094 to 185694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,249 DEBUG Processing 275/600 atomic regions from SNP 82323 to 82923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,259 DEBUG Processing 540/679 atomic regions from SNP 161888 to 162488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,273 DEBUG Processing 293/667 atomic regions from SNP 87786 to 88386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,290 DEBUG Processing 196/565 atomic regions from SNP 58680 to 59280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,430 DEBUG Processing 276/600 atomic regions from SNP 82623 to 83223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,433 DEBUG Processing 618/720 atomic regions from SNP 185394 to 185994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,465 DEBUG Processing 541/679 atomic regions from SNP 162188 to 162788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,476 DEBUG Processing 294/667 atomic regions from SNP 88086 to 88686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,482 DEBUG Processing 197/565 atomic regions from SNP 58980 to 59580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,611 DEBUG Processing 277/600 atomic regions from SNP 82923 to 83523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,655 DEBUG Processing 619/720 atomic regions from SNP 185694 to 186294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,671 DEBUG Processing 542/679 atomic regions from SNP 162488 to 163088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,674 DEBUG Processing 295/667 atomic regions from SNP 88386 to 88986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,678 DEBUG Processing 198/565 atomic regions from SNP 59280 to 59880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,788 DEBUG Processing 278/600 atomic regions from SNP 83223 to 83823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,856 DEBUG Processing 620/720 atomic regions from SNP 185994 to 186594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,876 DEBUG Processing 296/667 atomic regions from SNP 88686 to 89286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,884 DEBUG Processing 199/565 atomic regions from SNP 59580 to 60180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,899 DEBUG Processing 543/679 atomic regions from SNP 162788 to 163388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,973 DEBUG Processing 279/600 atomic regions from SNP 83523 to 84123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,053 DEBUG Processing 621/720 atomic regions from SNP 186294 to 186894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,064 DEBUG Processing 200/565 atomic regions from SNP 59880 to 60480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,072 DEBUG Processing 297/667 atomic regions from SNP 88986 to 89586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,125 DEBUG Processing 544/679 atomic regions from SNP 163088 to 163688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,154 DEBUG Processing 280/600 atomic regions from SNP 83823 to 84423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,246 DEBUG Processing 201/565 atomic regions from SNP 60180 to 60780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,271 DEBUG Processing 622/720 atomic regions from SNP 186594 to 187194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,271 DEBUG Processing 298/667 atomic regions from SNP 89286 to 89886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,340 DEBUG Processing 281/600 atomic regions from SNP 84123 to 84723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,348 DEBUG Processing 545/679 atomic regions from SNP 163388 to 163988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,431 DEBUG Processing 202/565 atomic regions from SNP 60480 to 61080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,471 DEBUG Processing 299/667 atomic regions from SNP 89586 to 90186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,492 DEBUG Processing 623/720 atomic regions from SNP 186894 to 187494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,521 DEBUG Processing 282/600 atomic regions from SNP 84423 to 85023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,566 DEBUG Processing 546/679 atomic regions from SNP 163688 to 164288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,610 DEBUG Processing 203/565 atomic regions from SNP 60780 to 61380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,667 DEBUG Processing 300/667 atomic regions from SNP 89886 to 90486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,702 DEBUG Processing 283/600 atomic regions from SNP 84723 to 85323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,722 DEBUG Processing 624/720 atomic regions from SNP 187194 to 187794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,763 DEBUG Processing 547/679 atomic regions from SNP 163988 to 164588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,801 DEBUG Processing 204/565 atomic regions from SNP 61080 to 61680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,862 DEBUG Processing 301/667 atomic regions from SNP 90186 to 90786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,883 DEBUG Processing 284/600 atomic regions from SNP 85023 to 85623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,948 DEBUG Processing 625/720 atomic regions from SNP 187494 to 188094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,966 DEBUG Processing 548/679 atomic regions from SNP 164288 to 164888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,978 DEBUG Processing 205/565 atomic regions from SNP 61380 to 61980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,056 DEBUG Processing 302/667 atomic regions from SNP 90486 to 91086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,062 DEBUG Processing 285/600 atomic regions from SNP 85323 to 85923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,158 DEBUG Processing 206/565 atomic regions from SNP 61680 to 62280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,170 DEBUG Processing 626/720 atomic regions from SNP 187794 to 188394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,180 DEBUG Processing 549/679 atomic regions from SNP 164588 to 165188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,243 DEBUG Processing 286/600 atomic regions from SNP 85623 to 86223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,247 DEBUG Processing 303/667 atomic regions from SNP 90786 to 91386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,340 DEBUG Processing 207/565 atomic regions from SNP 61980 to 62580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,395 DEBUG Processing 627/720 atomic regions from SNP 188094 to 188694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,423 DEBUG Processing 550/679 atomic regions from SNP 164888 to 165488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,430 DEBUG Processing 287/600 atomic regions from SNP 85923 to 86523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,458 DEBUG Processing 304/667 atomic regions from SNP 91086 to 91686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,528 DEBUG Processing 208/565 atomic regions from SNP 62280 to 62880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,611 DEBUG Processing 288/600 atomic regions from SNP 86223 to 86823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,622 DEBUG Processing 628/720 atomic regions from SNP 188394 to 188994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,649 DEBUG Processing 551/679 atomic regions from SNP 165188 to 165788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,667 DEBUG Processing 305/667 atomic regions from SNP 91386 to 91986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,732 DEBUG Processing 209/565 atomic regions from SNP 62580 to 63180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,789 DEBUG Processing 289/600 atomic regions from SNP 86523 to 87123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,842 DEBUG Processing 629/720 atomic regions from SNP 188694 to 189294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,847 DEBUG Processing 552/679 atomic regions from SNP 165488 to 166088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,892 DEBUG Processing 306/667 atomic regions from SNP 91686 to 92286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,932 DEBUG Processing 210/565 atomic regions from SNP 62880 to 63480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,965 DEBUG Processing 290/600 atomic regions from SNP 86823 to 87423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,045 DEBUG Processing 630/720 atomic regions from SNP 188994 to 189594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,046 DEBUG Processing 553/679 atomic regions from SNP 165788 to 166388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,085 DEBUG Processing 307/667 atomic regions from SNP 91986 to 92586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,138 DEBUG Processing 211/565 atomic regions from SNP 63180 to 63780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,140 DEBUG Processing 291/600 atomic regions from SNP 87123 to 87723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,257 DEBUG Processing 631/720 atomic regions from SNP 189294 to 189894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,257 DEBUG Processing 554/679 atomic regions from SNP 166088 to 166688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,277 DEBUG Processing 308/667 atomic regions from SNP 92286 to 92886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,321 DEBUG Processing 292/600 atomic regions from SNP 87423 to 88023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,341 DEBUG Processing 212/565 atomic regions from SNP 63480 to 64080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,468 DEBUG Processing 632/720 atomic regions from SNP 189594 to 190194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,472 DEBUG Processing 309/667 atomic regions from SNP 92586 to 93186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,479 DEBUG Processing 555/679 atomic regions from SNP 166388 to 166988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,504 DEBUG Processing 293/600 atomic regions from SNP 87723 to 88323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,534 DEBUG Processing 213/565 atomic regions from SNP 63780 to 64380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,664 DEBUG Processing 310/667 atomic regions from SNP 92886 to 93486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,668 DEBUG Processing 633/720 atomic regions from SNP 189894 to 190494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,684 DEBUG Processing 294/600 atomic regions from SNP 88023 to 88623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,697 DEBUG Processing 556/679 atomic regions from SNP 166688 to 167288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,727 DEBUG Processing 214/565 atomic regions from SNP 64080 to 64680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,855 DEBUG Processing 311/667 atomic regions from SNP 93186 to 93786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,865 DEBUG Processing 295/600 atomic regions from SNP 88323 to 88923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,869 DEBUG Processing 634/720 atomic regions from SNP 190194 to 190794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,910 DEBUG Processing 557/679 atomic regions from SNP 166988 to 167588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,920 DEBUG Processing 215/565 atomic regions from SNP 64380 to 64980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,047 DEBUG Processing 296/600 atomic regions from SNP 88623 to 89223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,048 DEBUG Processing 312/667 atomic regions from SNP 93486 to 94086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,071 DEBUG Processing 635/720 atomic regions from SNP 190494 to 191094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,122 DEBUG Processing 216/565 atomic regions from SNP 64680 to 65280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,129 DEBUG Processing 558/679 atomic regions from SNP 167288 to 167888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,229 DEBUG Processing 297/600 atomic regions from SNP 88923 to 89523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,242 DEBUG Processing 313/667 atomic regions from SNP 93786 to 94386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,288 DEBUG Processing 636/720 atomic regions from SNP 190794 to 191394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,302 DEBUG Processing 217/565 atomic regions from SNP 64980 to 65580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,326 DEBUG Processing 559/679 atomic regions from SNP 167588 to 168188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,409 DEBUG Processing 298/600 atomic regions from SNP 89223 to 89823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,437 DEBUG Processing 314/667 atomic regions from SNP 94086 to 94686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,441 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:54:26,482 DEBUG Processing 218/565 atomic regions from SNP 65280 to 65880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,506 DEBUG Processing 637/720 atomic regions from SNP 191094 to 191694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,524 DEBUG Processing 560/679 atomic regions from SNP 167888 to 168488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,585 DEBUG Processing 299/600 atomic regions from SNP 89523 to 90123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,630 DEBUG Processing 315/667 atomic regions from SNP 94386 to 94986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,658 DEBUG Processing 219/565 atomic regions from SNP 65580 to 66180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,712 DEBUG Processing 638/720 atomic regions from SNP 191394 to 191994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,727 DEBUG Processing 561/679 atomic regions from SNP 168188 to 168788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,767 DEBUG Processing 300/600 atomic regions from SNP 89823 to 90423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,826 DEBUG Processing 316/667 atomic regions from SNP 94686 to 95286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,838 DEBUG Processing 220/565 atomic regions from SNP 65880 to 66480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,910 DEBUG Processing 639/720 atomic regions from SNP 191694 to 192294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,938 DEBUG Processing 562/679 atomic regions from SNP 168488 to 169088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,946 DEBUG Processing 301/600 atomic regions from SNP 90123 to 90723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,014 DEBUG Processing 221/565 atomic regions from SNP 66180 to 66780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,021 DEBUG Processing 317/667 atomic regions from SNP 94986 to 95586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,116 DEBUG Processing 640/720 atomic regions from SNP 191994 to 192594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,134 DEBUG Processing 302/600 atomic regions from SNP 90423 to 91023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,144 DEBUG Processing 563/679 atomic regions from SNP 168788 to 169388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,197 DEBUG Processing 222/565 atomic regions from SNP 66480 to 67080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,219 DEBUG Processing 318/667 atomic regions from SNP 95286 to 95886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,314 DEBUG Processing 303/600 atomic regions from SNP 90723 to 91323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,316 DEBUG Processing 641/720 atomic regions from SNP 192294 to 192894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,347 DEBUG Processing 564/679 atomic regions from SNP 169088 to 169688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,373 DEBUG Processing 223/565 atomic regions from SNP 66780 to 67380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,408 DEBUG Processing 319/667 atomic regions from SNP 95586 to 96186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,498 DEBUG Processing 304/600 atomic regions from SNP 91023 to 91623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,517 DEBUG Processing 642/720 atomic regions from SNP 192594 to 193194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,549 DEBUG Processing 224/565 atomic regions from SNP 67080 to 67680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,569 DEBUG Processing 565/679 atomic regions from SNP 169388 to 169988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,601 DEBUG Processing 320/667 atomic regions from SNP 95886 to 96486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,699 DEBUG Processing 305/600 atomic regions from SNP 91323 to 91923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,724 DEBUG Processing 225/565 atomic regions from SNP 67380 to 67980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,724 DEBUG Processing 643/720 atomic regions from SNP 192894 to 193494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,791 DEBUG Processing 321/667 atomic regions from SNP 96186 to 96786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,794 DEBUG Processing 566/679 atomic regions from SNP 169688 to 170288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,879 DEBUG Processing 306/600 atomic regions from SNP 91623 to 92223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,899 DEBUG Processing 226/565 atomic regions from SNP 67680 to 68280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,947 DEBUG Processing 644/720 atomic regions from SNP 193194 to 193794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,987 DEBUG Processing 322/667 atomic regions from SNP 96486 to 97086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,998 DEBUG Processing 567/679 atomic regions from SNP 169988 to 170588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,059 DEBUG Processing 307/600 atomic regions from SNP 91923 to 92523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,078 DEBUG Processing 227/565 atomic regions from SNP 67980 to 68580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,164 DEBUG Processing 645/720 atomic regions from SNP 193494 to 194094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,180 DEBUG Processing 323/667 atomic regions from SNP 96786 to 97386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,193 DEBUG Processing 568/679 atomic regions from SNP 170288 to 170888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,242 DEBUG Processing 308/600 atomic regions from SNP 92223 to 92823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,257 DEBUG Processing 228/565 atomic regions from SNP 68280 to 68880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,364 DEBUG Processing 646/720 atomic regions from SNP 193794 to 194394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,380 DEBUG Processing 324/667 atomic regions from SNP 97086 to 97686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,391 DEBUG Processing 569/679 atomic regions from SNP 170588 to 171188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,421 DEBUG Processing 309/600 atomic regions from SNP 92523 to 93123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,435 DEBUG Processing 229/565 atomic regions from SNP 68580 to 69180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,559 DEBUG Processing 647/720 atomic regions from SNP 194094 to 194694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,574 DEBUG Processing 325/667 atomic regions from SNP 97386 to 97986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,585 DEBUG Processing 570/679 atomic regions from SNP 170888 to 171488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,597 DEBUG Processing 310/600 atomic regions from SNP 92823 to 93423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,609 DEBUG Processing 230/565 atomic regions from SNP 68880 to 69480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,753 DEBUG Processing 648/720 atomic regions from SNP 194394 to 194994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,767 DEBUG Processing 326/667 atomic regions from SNP 97686 to 98286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,774 DEBUG Processing 311/600 atomic regions from SNP 93123 to 93723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,786 DEBUG Processing 571/679 atomic regions from SNP 171188 to 171788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,786 DEBUG Processing 231/565 atomic regions from SNP 69180 to 69780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,954 DEBUG Processing 312/600 atomic regions from SNP 93423 to 94023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,960 DEBUG Processing 649/720 atomic regions from SNP 194694 to 195294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,966 DEBUG Processing 232/565 atomic regions from SNP 69480 to 70080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,976 DEBUG Processing 327/667 atomic regions from SNP 97986 to 98586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,013 DEBUG Processing 572/679 atomic regions from SNP 171488 to 172088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,140 DEBUG Processing 313/600 atomic regions from SNP 93723 to 94323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,149 DEBUG Processing 233/565 atomic regions from SNP 69780 to 70380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,169 DEBUG Processing 650/720 atomic regions from SNP 194994 to 195594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,175 DEBUG Processing 328/667 atomic regions from SNP 98286 to 98886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,208 DEBUG Processing 573/679 atomic regions from SNP 171788 to 172388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,317 DEBUG Processing 314/600 atomic regions from SNP 94023 to 94623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,328 DEBUG Processing 234/565 atomic regions from SNP 70080 to 70680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,371 DEBUG Processing 651/720 atomic regions from SNP 195294 to 195894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,374 DEBUG Processing 329/667 atomic regions from SNP 98586 to 99186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,404 DEBUG Processing 574/679 atomic regions from SNP 172088 to 172688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,499 DEBUG Processing 315/600 atomic regions from SNP 94323 to 94923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,509 DEBUG Processing 235/565 atomic regions from SNP 70380 to 70980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,570 DEBUG Processing 330/667 atomic regions from SNP 98886 to 99486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,572 DEBUG Processing 652/720 atomic regions from SNP 195594 to 196194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,601 DEBUG Processing 575/679 atomic regions from SNP 172388 to 172988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,677 DEBUG Processing 316/600 atomic regions from SNP 94623 to 95223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,686 DEBUG Processing 236/565 atomic regions from SNP 70680 to 71280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,770 DEBUG Processing 331/667 atomic regions from SNP 99186 to 99786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,777 DEBUG Processing 653/720 atomic regions from SNP 195894 to 196494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,800 DEBUG Processing 576/679 atomic regions from SNP 172688 to 173288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,860 DEBUG Processing 317/600 atomic regions from SNP 94923 to 95523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,868 DEBUG Processing 237/565 atomic regions from SNP 70980 to 71580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,969 DEBUG Processing 332/667 atomic regions from SNP 99486 to 100086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,981 DEBUG Processing 654/720 atomic regions from SNP 196194 to 196794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,010 DEBUG Processing 577/679 atomic regions from SNP 172988 to 173588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,039 DEBUG Processing 318/600 atomic regions from SNP 95223 to 95823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,045 DEBUG Processing 238/565 atomic regions from SNP 71280 to 71880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,165 DEBUG Processing 333/667 atomic regions from SNP 99786 to 100386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,186 DEBUG Processing 655/720 atomic regions from SNP 196494 to 197094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,219 DEBUG Processing 578/679 atomic regions from SNP 173288 to 173888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,221 DEBUG Processing 319/600 atomic regions from SNP 95523 to 96123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,225 DEBUG Processing 239/565 atomic regions from SNP 71580 to 72180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,361 DEBUG Processing 334/667 atomic regions from SNP 100086 to 100686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,389 DEBUG Processing 656/720 atomic regions from SNP 196794 to 197394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,404 DEBUG Processing 320/600 atomic regions from SNP 95823 to 96423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,405 DEBUG Processing 240/565 atomic regions from SNP 71880 to 72480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,415 DEBUG Processing 579/679 atomic regions from SNP 173588 to 174188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,556 DEBUG Processing 335/667 atomic regions from SNP 100386 to 100986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,587 DEBUG Processing 241/565 atomic regions from SNP 72180 to 72780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,590 DEBUG Processing 657/720 atomic regions from SNP 197094 to 197694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,609 DEBUG Processing 321/600 atomic regions from SNP 96123 to 96723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,614 DEBUG Processing 580/679 atomic regions from SNP 173888 to 174488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,753 DEBUG Processing 336/667 atomic regions from SNP 100686 to 101286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,767 DEBUG Processing 242/565 atomic regions from SNP 72480 to 73080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,792 DEBUG Processing 658/720 atomic regions from SNP 197394 to 197994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,815 DEBUG Processing 581/679 atomic regions from SNP 174188 to 174788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,825 DEBUG Processing 322/600 atomic regions from SNP 96423 to 97023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,950 DEBUG Processing 243/565 atomic regions from SNP 72780 to 73380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,951 DEBUG Processing 337/667 atomic regions from SNP 100986 to 101586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,996 DEBUG Processing 659/720 atomic regions from SNP 197694 to 198294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,017 DEBUG Processing 582/679 atomic regions from SNP 174488 to 175088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,036 DEBUG Processing 323/600 atomic regions from SNP 96723 to 97323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,131 DEBUG Processing 244/565 atomic regions from SNP 73080 to 73680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,147 DEBUG Processing 338/667 atomic regions from SNP 101286 to 101886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,199 DEBUG Processing 660/720 atomic regions from SNP 197994 to 198594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,216 DEBUG Processing 583/679 atomic regions from SNP 174788 to 175388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,225 DEBUG Processing 324/600 atomic regions from SNP 97023 to 97623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,312 DEBUG Processing 245/565 atomic regions from SNP 73380 to 73980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,350 DEBUG Processing 339/667 atomic regions from SNP 101586 to 102186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,402 DEBUG Processing 661/720 atomic regions from SNP 198294 to 198894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,416 DEBUG Processing 325/600 atomic regions from SNP 97323 to 97923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,419 DEBUG Processing 584/679 atomic regions from SNP 175088 to 175688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,495 DEBUG Processing 246/565 atomic regions from SNP 73680 to 74280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,553 DEBUG Processing 340/667 atomic regions from SNP 101886 to 102486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,602 DEBUG Processing 662/720 atomic regions from SNP 198594 to 199194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,614 DEBUG Processing 326/600 atomic regions from SNP 97623 to 98223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,636 DEBUG Processing 585/679 atomic regions from SNP 175388 to 175988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,673 DEBUG Processing 247/565 atomic regions from SNP 73980 to 74580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,753 DEBUG Processing 341/667 atomic regions from SNP 102186 to 102786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,800 DEBUG Processing 663/720 atomic regions from SNP 198894 to 199494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,818 DEBUG Processing 327/600 atomic regions from SNP 97923 to 98523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,854 DEBUG Processing 586/679 atomic regions from SNP 175688 to 176288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,858 DEBUG Processing 248/565 atomic regions from SNP 74280 to 74880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,952 DEBUG Processing 342/667 atomic regions from SNP 102486 to 103086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,999 DEBUG Processing 664/720 atomic regions from SNP 199194 to 199794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,032 DEBUG Processing 328/600 atomic regions from SNP 98223 to 98823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,050 DEBUG Processing 249/565 atomic regions from SNP 74580 to 75180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,058 DEBUG Processing 587/679 atomic regions from SNP 175988 to 176588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,147 DEBUG Processing 343/667 atomic regions from SNP 102786 to 103386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,194 DEBUG Processing 665/720 atomic regions from SNP 199494 to 200094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,227 DEBUG Processing 250/565 atomic regions from SNP 74880 to 75480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,236 DEBUG Processing 329/600 atomic regions from SNP 98523 to 99123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,252 DEBUG Processing 588/679 atomic regions from SNP 176288 to 176888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,339 DEBUG Processing 344/667 atomic regions from SNP 103086 to 103686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,390 DEBUG Processing 666/720 atomic regions from SNP 199794 to 200394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,406 DEBUG Processing 251/565 atomic regions from SNP 75180 to 75780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,427 DEBUG Processing 330/600 atomic regions from SNP 98823 to 99423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,446 DEBUG Processing 589/679 atomic regions from SNP 176588 to 177188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,531 DEBUG Processing 345/667 atomic regions from SNP 103386 to 103986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,586 DEBUG Processing 252/565 atomic regions from SNP 75480 to 76080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,588 DEBUG Processing 667/720 atomic regions from SNP 200094 to 200694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,608 DEBUG Processing 331/600 atomic regions from SNP 99123 to 99723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,641 DEBUG Processing 590/679 atomic regions from SNP 176888 to 177488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,726 DEBUG Processing 346/667 atomic regions from SNP 103686 to 104286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,767 DEBUG Processing 253/565 atomic regions from SNP 75780 to 76380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,789 DEBUG Processing 668/720 atomic regions from SNP 200394 to 200994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,795 DEBUG Processing 332/600 atomic regions from SNP 99423 to 100023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,844 DEBUG Processing 591/679 atomic regions from SNP 177188 to 177788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,929 DEBUG Processing 347/667 atomic regions from SNP 103986 to 104586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,946 DEBUG Processing 254/565 atomic regions from SNP 76080 to 76680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,977 DEBUG Processing 333/600 atomic regions from SNP 99723 to 100323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,991 DEBUG Processing 669/720 atomic regions from SNP 200694 to 201294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,040 DEBUG Processing 592/679 atomic regions from SNP 177488 to 178088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,121 DEBUG Processing 348/667 atomic regions from SNP 104286 to 104886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,122 DEBUG Processing 255/565 atomic regions from SNP 76380 to 76980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,157 DEBUG Processing 334/600 atomic regions from SNP 100023 to 100623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,188 DEBUG Processing 670/720 atomic regions from SNP 200994 to 201594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,233 DEBUG Processing 593/679 atomic regions from SNP 177788 to 178388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,301 DEBUG Processing 256/565 atomic regions from SNP 76680 to 77280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,314 DEBUG Processing 349/667 atomic regions from SNP 104586 to 105186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,332 DEBUG Processing 335/600 atomic regions from SNP 100323 to 100923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,384 DEBUG Processing 671/720 atomic regions from SNP 201294 to 201894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,428 DEBUG Processing 594/679 atomic regions from SNP 178088 to 178688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,478 DEBUG Processing 257/565 atomic regions from SNP 76980 to 77580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,509 DEBUG Processing 350/667 atomic regions from SNP 104886 to 105486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,510 DEBUG Processing 336/600 atomic regions from SNP 100623 to 101223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,577 DEBUG Processing 672/720 atomic regions from SNP 201594 to 202194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,625 DEBUG Processing 595/679 atomic regions from SNP 178388 to 178988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,658 DEBUG Processing 258/565 atomic regions from SNP 77280 to 77880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,693 DEBUG Processing 337/600 atomic regions from SNP 100923 to 101523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,704 DEBUG Processing 351/667 atomic regions from SNP 105186 to 105786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,774 DEBUG Processing 673/720 atomic regions from SNP 201894 to 202494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,828 DEBUG Processing 596/679 atomic regions from SNP 178688 to 179288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,836 DEBUG Processing 259/565 atomic regions from SNP 77580 to 78180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,872 DEBUG Processing 338/600 atomic regions from SNP 101223 to 101823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,897 DEBUG Processing 352/667 atomic regions from SNP 105486 to 106086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,969 DEBUG Processing 674/720 atomic regions from SNP 202194 to 202794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,016 DEBUG Processing 260/565 atomic regions from SNP 77880 to 78480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,029 DEBUG Processing 597/679 atomic regions from SNP 178988 to 179588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,052 DEBUG Processing 339/600 atomic regions from SNP 101523 to 102123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,093 DEBUG Processing 353/667 atomic regions from SNP 105786 to 106386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,166 DEBUG Processing 675/720 atomic regions from SNP 202494 to 203094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,194 DEBUG Processing 261/565 atomic regions from SNP 78180 to 78780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,230 DEBUG Processing 340/600 atomic regions from SNP 101823 to 102423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,230 DEBUG Processing 598/679 atomic regions from SNP 179288 to 179888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,289 DEBUG Processing 354/667 atomic regions from SNP 106086 to 106686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,363 DEBUG Processing 676/720 atomic regions from SNP 202794 to 203394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,371 DEBUG Processing 262/565 atomic regions from SNP 78480 to 79080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,408 DEBUG Processing 341/600 atomic regions from SNP 102123 to 102723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,426 DEBUG Processing 599/679 atomic regions from SNP 179588 to 180188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,481 DEBUG Processing 355/667 atomic regions from SNP 106386 to 106986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,547 DEBUG Processing 263/565 atomic regions from SNP 78780 to 79380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,565 DEBUG Processing 677/720 atomic regions from SNP 203094 to 203694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,589 DEBUG Processing 342/600 atomic regions from SNP 102423 to 103023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,621 DEBUG Processing 600/679 atomic regions from SNP 179888 to 180488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,673 DEBUG Processing 356/667 atomic regions from SNP 106686 to 107286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,727 DEBUG Processing 264/565 atomic regions from SNP 79080 to 79680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,765 DEBUG Processing 678/720 atomic regions from SNP 203394 to 203994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,769 DEBUG Processing 343/600 atomic regions from SNP 102723 to 103323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,816 DEBUG Processing 601/679 atomic regions from SNP 180188 to 180788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,865 DEBUG Processing 357/667 atomic regions from SNP 106986 to 107586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,901 DEBUG Processing 265/565 atomic regions from SNP 79380 to 79980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,948 DEBUG Processing 344/600 atomic regions from SNP 103023 to 103623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,973 DEBUG Processing 679/720 atomic regions from SNP 203694 to 204294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,015 DEBUG Processing 602/679 atomic regions from SNP 180488 to 181088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,059 DEBUG Processing 358/667 atomic regions from SNP 107286 to 107886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,076 DEBUG Processing 266/565 atomic regions from SNP 79680 to 80280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,124 DEBUG Processing 345/600 atomic regions from SNP 103323 to 103923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,198 DEBUG Processing 680/720 atomic regions from SNP 203994 to 204594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,234 DEBUG Processing 603/679 atomic regions from SNP 180788 to 181388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,252 DEBUG Processing 359/667 atomic regions from SNP 107586 to 108186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,253 DEBUG Processing 267/565 atomic regions from SNP 79980 to 80580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,301 DEBUG Processing 346/600 atomic regions from SNP 103623 to 104223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,428 DEBUG Processing 681/720 atomic regions from SNP 204294 to 204894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,431 DEBUG Processing 268/565 atomic regions from SNP 80280 to 80880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,446 DEBUG Processing 604/679 atomic regions from SNP 181088 to 181688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,454 DEBUG Processing 360/667 atomic regions from SNP 107886 to 108486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,488 DEBUG Processing 347/600 atomic regions from SNP 103923 to 104523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,609 DEBUG Processing 269/565 atomic regions from SNP 80580 to 81180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,642 DEBUG Processing 605/679 atomic regions from SNP 181388 to 181988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,646 DEBUG Processing 361/667 atomic regions from SNP 108186 to 108786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,654 DEBUG Processing 682/720 atomic regions from SNP 204594 to 205194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,669 DEBUG Processing 348/600 atomic regions from SNP 104223 to 104823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,787 DEBUG Processing 270/565 atomic regions from SNP 80880 to 81480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,839 DEBUG Processing 606/679 atomic regions from SNP 181688 to 182288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,842 DEBUG Processing 362/667 atomic regions from SNP 108486 to 109086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,849 DEBUG Processing 349/600 atomic regions from SNP 104523 to 105123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,884 DEBUG Processing 683/720 atomic regions from SNP 204894 to 205494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,963 DEBUG Processing 271/565 atomic regions from SNP 81180 to 81780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,026 DEBUG Processing 350/600 atomic regions from SNP 104823 to 105423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,034 DEBUG Processing 607/679 atomic regions from SNP 181988 to 182588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,057 DEBUG Processing 363/667 atomic regions from SNP 108786 to 109386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,116 DEBUG Processing 684/720 atomic regions from SNP 205194 to 205794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,142 DEBUG Processing 272/565 atomic regions from SNP 81480 to 82080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,203 DEBUG Processing 351/600 atomic regions from SNP 105123 to 105723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,228 DEBUG Processing 608/679 atomic regions from SNP 182288 to 182888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,286 DEBUG Processing 364/667 atomic regions from SNP 109086 to 109686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,319 DEBUG Processing 273/565 atomic regions from SNP 81780 to 82380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,349 DEBUG Processing 685/720 atomic regions from SNP 205494 to 206094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,382 DEBUG Processing 352/600 atomic regions from SNP 105423 to 106023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,429 DEBUG Processing 609/679 atomic regions from SNP 182588 to 183188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,499 DEBUG Processing 274/565 atomic regions from SNP 82080 to 82680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,505 DEBUG Processing 365/667 atomic regions from SNP 109386 to 109986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,564 DEBUG Processing 353/600 atomic regions from SNP 105723 to 106323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,574 DEBUG Processing 686/720 atomic regions from SNP 205794 to 206394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,630 DEBUG Processing 610/679 atomic regions from SNP 182888 to 183488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,678 DEBUG Processing 275/565 atomic regions from SNP 82380 to 82980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,708 DEBUG Processing 366/667 atomic regions from SNP 109686 to 110286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,748 DEBUG Processing 354/600 atomic regions from SNP 106023 to 106623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,800 DEBUG Processing 687/720 atomic regions from SNP 206094 to 206694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,848 DEBUG Processing 611/679 atomic regions from SNP 183188 to 183788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,857 DEBUG Processing 276/565 atomic regions from SNP 82680 to 83280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,924 DEBUG Processing 367/667 atomic regions from SNP 109986 to 110586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,928 DEBUG Processing 355/600 atomic regions from SNP 106323 to 106923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,030 DEBUG Processing 688/720 atomic regions from SNP 206394 to 206994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,036 DEBUG Processing 277/565 atomic regions from SNP 82980 to 83580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,047 DEBUG Processing 612/679 atomic regions from SNP 183488 to 184088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,111 DEBUG Processing 356/600 atomic regions from SNP 106623 to 107223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,136 DEBUG Processing 368/667 atomic regions from SNP 110286 to 110886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,219 DEBUG Processing 278/565 atomic regions from SNP 83280 to 83880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,249 DEBUG Processing 613/679 atomic regions from SNP 183788 to 184388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,260 DEBUG Processing 689/720 atomic regions from SNP 206694 to 207294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,292 DEBUG Processing 357/600 atomic regions from SNP 106923 to 107523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,338 DEBUG Processing 369/667 atomic regions from SNP 110586 to 111186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,396 DEBUG Processing 279/565 atomic regions from SNP 83580 to 84180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,445 DEBUG Processing 614/679 atomic regions from SNP 184088 to 184688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,481 DEBUG Processing 690/720 atomic regions from SNP 206994 to 207594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,485 DEBUG Processing 358/600 atomic regions from SNP 107223 to 107823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,539 DEBUG Processing 370/667 atomic regions from SNP 110886 to 111486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,573 DEBUG Processing 280/565 atomic regions from SNP 83880 to 84480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,641 DEBUG Processing 615/679 atomic regions from SNP 184388 to 184988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,686 DEBUG Processing 359/600 atomic regions from SNP 107523 to 108123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,705 DEBUG Processing 691/720 atomic regions from SNP 207294 to 207894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,735 DEBUG Processing 371/667 atomic regions from SNP 111186 to 111786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,775 DEBUG Processing 281/565 atomic regions from SNP 84180 to 84780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,782 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:54:37,783 DEBUG chr17: Signal quantile: 0.989. signal threshold: 13. Best RMSEA: 0.013 2025-01-31 09:54:37,834 DEBUG Processing 616/679 atomic regions from SNP 184688 to 185288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,888 DEBUG Processing 360/600 atomic regions from SNP 107823 to 108423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,926 DEBUG Processing 692/720 atomic regions from SNP 207594 to 208194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,930 DEBUG Processing 372/667 atomic regions from SNP 111486 to 112086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,971 DEBUG Processing 282/565 atomic regions from SNP 84480 to 85080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,028 DEBUG Processing 617/679 atomic regions from SNP 184988 to 185588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,069 DEBUG Processing 361/600 atomic regions from SNP 108123 to 108723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,127 DEBUG Processing 373/667 atomic regions from SNP 111786 to 112386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,151 DEBUG Processing 283/565 atomic regions from SNP 84780 to 85380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,155 DEBUG Processing 693/720 atomic regions from SNP 207894 to 208494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,223 DEBUG Processing 618/679 atomic regions from SNP 185288 to 185888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,244 DEBUG Processing 362/600 atomic regions from SNP 108423 to 109023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,329 DEBUG Processing 284/565 atomic regions from SNP 85080 to 85680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,331 DEBUG Processing 374/667 atomic regions from SNP 112086 to 112686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,370 DEBUG Processing 694/720 atomic regions from SNP 208194 to 208794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,418 DEBUG Processing 363/600 atomic regions from SNP 108723 to 109323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,436 DEBUG Processing 619/679 atomic regions from SNP 185588 to 186188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,504 DEBUG Processing 285/565 atomic regions from SNP 85380 to 85980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,563 DEBUG Processing 375/667 atomic regions from SNP 112386 to 112986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,579 DEBUG Processing 695/720 atomic regions from SNP 208494 to 209094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,599 DEBUG Processing 364/600 atomic regions from SNP 109023 to 109623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,653 DEBUG Processing 620/679 atomic regions from SNP 185888 to 186488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,682 DEBUG Processing 286/565 atomic regions from SNP 85680 to 86280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,762 DEBUG Processing 376/667 atomic regions from SNP 112686 to 113286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,780 DEBUG Processing 365/600 atomic regions from SNP 109323 to 109923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,804 DEBUG Processing 696/720 atomic regions from SNP 208794 to 209394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,860 DEBUG Processing 287/565 atomic regions from SNP 85980 to 86580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,872 DEBUG Processing 621/679 atomic regions from SNP 186188 to 186788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,956 DEBUG Processing 377/667 atomic regions from SNP 112986 to 113586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,960 DEBUG Processing 366/600 atomic regions from SNP 109623 to 110223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,021 DEBUG Processing 697/720 atomic regions from SNP 209094 to 209694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,038 DEBUG Processing 288/565 atomic regions from SNP 86280 to 86880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,064 DEBUG Processing 622/679 atomic regions from SNP 186488 to 187088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,140 DEBUG Processing 367/600 atomic regions from SNP 109923 to 110523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,149 DEBUG Processing 378/667 atomic regions from SNP 113286 to 113886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,213 DEBUG Processing 289/565 atomic regions from SNP 86580 to 87180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,230 DEBUG Processing 698/720 atomic regions from SNP 209394 to 209994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,257 DEBUG Processing 623/679 atomic regions from SNP 186788 to 187388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,320 DEBUG Processing 368/600 atomic regions from SNP 110223 to 110823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,341 DEBUG Processing 379/667 atomic regions from SNP 113586 to 114186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,343 DEBUG chr17 total SNP count: 161325 2025-01-31 09:54:39,343 DEBUG chr17 length: 94987271 2025-01-31 09:54:39,343 DEBUG ----------------------------------------- 2025-01-31 09:54:39,343 INFO Processing SNPs in chr17 2025-01-31 09:54:39,390 DEBUG Processing 290/565 atomic regions from SNP 86880 to 87480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,445 DEBUG Processing 699/720 atomic regions from SNP 209694 to 210294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,453 DEBUG Processing 624/679 atomic regions from SNP 187088 to 187688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,498 DEBUG Processing 369/600 atomic regions from SNP 110523 to 111123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,499 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 161325)] 2025-01-31 09:54:39,543 DEBUG Processing 380/667 atomic regions from SNP 113886 to 114486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,565 DEBUG Processing 291/565 atomic regions from SNP 87180 to 87780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,605 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:39,646 DEBUG Processing 625/679 atomic regions from SNP 187388 to 187988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,667 DEBUG Processing 700/720 atomic regions from SNP 209994 to 210594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,677 DEBUG Processing 370/600 atomic regions from SNP 110823 to 111423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,742 DEBUG Processing 292/565 atomic regions from SNP 87480 to 88080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,759 DEBUG Processing 381/667 atomic regions from SNP 114186 to 114786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,839 DEBUG Processing 626/679 atomic regions from SNP 187688 to 188288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,858 DEBUG Processing 371/600 atomic regions from SNP 111123 to 111723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,876 DEBUG Processing 701/720 atomic regions from SNP 210294 to 210894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,917 DEBUG Processing 293/565 atomic regions from SNP 87780 to 88380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,973 DEBUG Processing 382/667 atomic regions from SNP 114486 to 115086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,030 DEBUG Processing 627/679 atomic regions from SNP 187988 to 188588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,040 DEBUG Processing 372/600 atomic regions from SNP 111423 to 112023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,074 DEBUG Processing 702/720 atomic regions from SNP 210594 to 211194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,091 DEBUG Processing 294/565 atomic regions from SNP 88080 to 88680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,162 DEBUG Processing 383/667 atomic regions from SNP 114786 to 115386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,219 DEBUG Processing 373/600 atomic regions from SNP 111723 to 112323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,221 DEBUG Processing 628/679 atomic regions from SNP 188288 to 188888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,267 DEBUG Processing 295/565 atomic regions from SNP 88380 to 88980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,273 DEBUG Processing 703/720 atomic regions from SNP 210894 to 211494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,353 DEBUG Processing 384/667 atomic regions from SNP 115086 to 115686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,412 DEBUG Processing 629/679 atomic regions from SNP 188588 to 189188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,419 DEBUG Processing 374/600 atomic regions from SNP 112023 to 112623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,442 DEBUG Processing 296/565 atomic regions from SNP 88680 to 89280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,473 DEBUG Processing 704/720 atomic regions from SNP 211194 to 211794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,556 DEBUG Processing 385/667 atomic regions from SNP 115386 to 115986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,606 DEBUG Processing 630/679 atomic regions from SNP 188888 to 189488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,611 DEBUG Processing 375/600 atomic regions from SNP 112323 to 112923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,618 DEBUG Processing 297/565 atomic regions from SNP 88980 to 89580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,687 DEBUG Processing 705/720 atomic regions from SNP 211494 to 212094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,761 DEBUG Processing 386/667 atomic regions from SNP 115686 to 116286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,795 DEBUG Processing 298/565 atomic regions from SNP 89280 to 89880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,812 DEBUG Processing 631/679 atomic regions from SNP 189188 to 189788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,812 DEBUG Processing 376/600 atomic regions from SNP 112623 to 113223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,900 DEBUG Processing 706/720 atomic regions from SNP 211794 to 212394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,954 DEBUG Processing 387/667 atomic regions from SNP 115986 to 116586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,971 DEBUG Processing 299/565 atomic regions from SNP 89580 to 90180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,005 DEBUG Processing 377/600 atomic regions from SNP 112923 to 113523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,031 DEBUG Processing 632/679 atomic regions from SNP 189488 to 190088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,109 DEBUG Processing 707/720 atomic regions from SNP 212094 to 212694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,148 DEBUG Processing 388/667 atomic regions from SNP 116286 to 116886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,149 DEBUG Processing 300/565 atomic regions from SNP 89880 to 90480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,184 DEBUG Processing 378/600 atomic regions from SNP 113223 to 113823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,258 DEBUG Processing 633/679 atomic regions from SNP 189788 to 190388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,315 DEBUG Processing 708/720 atomic regions from SNP 212394 to 212994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,327 DEBUG Processing 301/565 atomic regions from SNP 90180 to 90780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,345 DEBUG Processing 389/667 atomic regions from SNP 116586 to 117186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,362 DEBUG Processing 379/600 atomic regions from SNP 113523 to 114123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,468 DEBUG Processing 634/679 atomic regions from SNP 190088 to 190688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,506 DEBUG Processing 302/565 atomic regions from SNP 90480 to 91080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,531 DEBUG Processing 709/720 atomic regions from SNP 212694 to 213294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,541 DEBUG Processing 380/600 atomic regions from SNP 113823 to 114423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,545 DEBUG Processing 390/667 atomic regions from SNP 116886 to 117486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,664 DEBUG Processing 635/679 atomic regions from SNP 190388 to 190988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,682 DEBUG Processing 303/565 atomic regions from SNP 90780 to 91380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,723 DEBUG Processing 381/600 atomic regions from SNP 114123 to 114723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,736 DEBUG Processing 391/667 atomic regions from SNP 117186 to 117786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,756 DEBUG Processing 710/720 atomic regions from SNP 212994 to 213594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,861 DEBUG Processing 304/565 atomic regions from SNP 91080 to 91680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,861 DEBUG Processing 636/679 atomic regions from SNP 190688 to 191288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,907 DEBUG Processing 382/600 atomic regions from SNP 114423 to 115023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,928 DEBUG Processing 392/667 atomic regions from SNP 117486 to 118086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,978 DEBUG Processing 711/720 atomic regions from SNP 213294 to 213894 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,036 DEBUG Processing 305/565 atomic regions from SNP 91380 to 91980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,064 DEBUG Processing 637/679 atomic regions from SNP 190988 to 191588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,086 DEBUG Processing 383/600 atomic regions from SNP 114723 to 115323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,127 DEBUG Processing 393/667 atomic regions from SNP 117786 to 118386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,205 DEBUG Processing 712/720 atomic regions from SNP 213594 to 214194 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,210 DEBUG Processing 306/565 atomic regions from SNP 91680 to 92280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,266 DEBUG Processing 384/600 atomic regions from SNP 115023 to 115623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,279 DEBUG Processing 638/679 atomic regions from SNP 191288 to 191888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,322 DEBUG Processing 394/667 atomic regions from SNP 118086 to 118686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,393 DEBUG Processing 307/565 atomic regions from SNP 91980 to 92580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,437 DEBUG Processing 713/720 atomic regions from SNP 213894 to 214494 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,446 DEBUG Processing 385/600 atomic regions from SNP 115323 to 115923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,498 DEBUG Processing 639/679 atomic regions from SNP 191588 to 192188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,514 DEBUG Processing 395/667 atomic regions from SNP 118386 to 118986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,563 DEBUG Processing 308/565 atomic regions from SNP 92280 to 92880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,623 DEBUG Processing 386/600 atomic regions from SNP 115623 to 116223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,669 DEBUG Processing 714/720 atomic regions from SNP 214194 to 214794 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,697 DEBUG Processing 640/679 atomic regions from SNP 191888 to 192488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,708 DEBUG Processing 396/667 atomic regions from SNP 118686 to 119286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,738 DEBUG Processing 309/565 atomic regions from SNP 92580 to 93180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,800 DEBUG Processing 387/600 atomic regions from SNP 115923 to 116523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,894 DEBUG Processing 641/679 atomic regions from SNP 192188 to 192788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,902 DEBUG Processing 397/667 atomic regions from SNP 118986 to 119586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,905 DEBUG Processing 715/720 atomic regions from SNP 214494 to 215094 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,915 DEBUG Processing 310/565 atomic regions from SNP 92880 to 93480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,975 DEBUG Processing 388/600 atomic regions from SNP 116223 to 116823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,087 DEBUG Processing 642/679 atomic regions from SNP 192488 to 193088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,093 DEBUG Processing 311/565 atomic regions from SNP 93180 to 93780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,099 DEBUG Processing 398/667 atomic regions from SNP 119286 to 119886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,128 DEBUG Processing 716/720 atomic regions from SNP 214794 to 215394 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,153 DEBUG Processing 389/600 atomic regions from SNP 116523 to 117123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,272 DEBUG Processing 312/565 atomic regions from SNP 93480 to 94080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,284 DEBUG Processing 643/679 atomic regions from SNP 192788 to 193388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,295 DEBUG Processing 399/667 atomic regions from SNP 119586 to 120186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,335 DEBUG Processing 390/600 atomic regions from SNP 116823 to 117423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,346 DEBUG Processing 717/720 atomic regions from SNP 215094 to 215694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,461 DEBUG Processing 313/565 atomic regions from SNP 93780 to 94380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,499 DEBUG Processing 644/679 atomic regions from SNP 193088 to 193688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,505 DEBUG Processing 400/667 atomic regions from SNP 119886 to 120486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,531 DEBUG Processing 391/600 atomic regions from SNP 117123 to 117723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,575 DEBUG Processing 718/720 atomic regions from SNP 215394 to 215994 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,637 DEBUG Processing 314/565 atomic regions from SNP 94080 to 94680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,698 DEBUG Processing 401/667 atomic regions from SNP 120186 to 120786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,710 DEBUG Processing 645/679 atomic regions from SNP 193388 to 193988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,714 DEBUG Processing 392/600 atomic regions from SNP 117423 to 118023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,788 DEBUG Processing 719/720 atomic regions from SNP 215694 to 216294 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,810 DEBUG Processing 315/565 atomic regions from SNP 94380 to 94980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,890 DEBUG Processing 402/667 atomic regions from SNP 120486 to 121086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,896 DEBUG Processing 393/600 atomic regions from SNP 117723 to 118323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,901 DEBUG Processing 646/679 atomic regions from SNP 193688 to 194288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,985 DEBUG Processing 720/720 atomic regions from SNP 215994 to 216594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,003 DEBUG Processing 316/565 atomic regions from SNP 94680 to 95280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,081 DEBUG Processing 394/600 atomic regions from SNP 118023 to 118623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,094 DEBUG Processing 403/667 atomic regions from SNP 120786 to 121386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,094 DEBUG Unique SNPs positions in subchromosome 1: 216595 2025-01-31 09:54:44,096 DEBUG Processing 647/679 atomic regions from SNP 193988 to 194588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,212 DEBUG Processing 317/565 atomic regions from SNP 94980 to 95580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,263 DEBUG Processing 395/600 atomic regions from SNP 118323 to 118923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,287 DEBUG Processing 648/679 atomic regions from SNP 194288 to 194888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,312 DEBUG Processing 404/667 atomic regions from SNP 121086 to 121686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,404 DEBUG Processing 318/565 atomic regions from SNP 95280 to 95880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,446 DEBUG Processing 396/600 atomic regions from SNP 118623 to 119223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,478 DEBUG Processing 649/679 atomic regions from SNP 194588 to 195188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,506 DEBUG Processing 405/667 atomic regions from SNP 121386 to 121986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,591 DEBUG Processing 319/565 atomic regions from SNP 95580 to 96180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,639 DEBUG Processing 397/600 atomic regions from SNP 118923 to 119523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,679 DEBUG Processing 650/679 atomic regions from SNP 194888 to 195488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,716 DEBUG Processing 406/667 atomic regions from SNP 121686 to 122286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,795 DEBUG Processing 320/565 atomic regions from SNP 95880 to 96480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,828 DEBUG Processing 398/600 atomic regions from SNP 119223 to 119823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,882 DEBUG Processing 651/679 atomic regions from SNP 195188 to 195788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,928 DEBUG Processing 407/667 atomic regions from SNP 121986 to 122586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,969 DEBUG Processing 321/565 atomic regions from SNP 96180 to 96780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,008 DEBUG Processing 399/600 atomic regions from SNP 119523 to 120123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,076 DEBUG Processing 652/679 atomic regions from SNP 195488 to 196088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,148 DEBUG Processing 322/565 atomic regions from SNP 96480 to 97080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,151 DEBUG Processing 408/667 atomic regions from SNP 122286 to 122886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,190 DEBUG Processing 400/600 atomic regions from SNP 119823 to 120423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,273 DEBUG Processing 653/679 atomic regions from SNP 195788 to 196388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,331 DEBUG Processing 323/565 atomic regions from SNP 96780 to 97380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,369 DEBUG Processing 401/600 atomic regions from SNP 120123 to 120723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,377 DEBUG Processing 409/667 atomic regions from SNP 122586 to 123186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,465 DEBUG Processing 654/679 atomic regions from SNP 196088 to 196688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,517 DEBUG Processing 324/565 atomic regions from SNP 97080 to 97680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,547 DEBUG Processing 402/600 atomic regions from SNP 120423 to 121023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,604 DEBUG Processing 410/667 atomic regions from SNP 122886 to 123486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,659 DEBUG Processing 655/679 atomic regions from SNP 196388 to 196988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,692 DEBUG Processing 325/565 atomic regions from SNP 97380 to 97980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,724 DEBUG Processing 403/600 atomic regions from SNP 120723 to 121323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,826 DEBUG Processing 411/667 atomic regions from SNP 123186 to 123786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,856 DEBUG Processing 656/679 atomic regions from SNP 196688 to 197288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,868 DEBUG Processing 326/565 atomic regions from SNP 97680 to 98280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,906 DEBUG Processing 404/600 atomic regions from SNP 121023 to 121623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,036 DEBUG Processing 412/667 atomic regions from SNP 123486 to 124086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,044 DEBUG Processing 327/565 atomic regions from SNP 97980 to 98580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,049 DEBUG Processing 657/679 atomic regions from SNP 196988 to 197588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,084 DEBUG Processing 405/600 atomic regions from SNP 121323 to 121923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,222 DEBUG Processing 328/565 atomic regions from SNP 98280 to 98880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,230 DEBUG Processing 413/667 atomic regions from SNP 123786 to 124386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,245 DEBUG Processing 658/679 atomic regions from SNP 197288 to 197888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,261 DEBUG Processing 406/600 atomic regions from SNP 121623 to 122223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,398 DEBUG Processing 329/565 atomic regions from SNP 98580 to 99180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,422 DEBUG Processing 414/667 atomic regions from SNP 124086 to 124686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,436 DEBUG Processing 407/600 atomic regions from SNP 121923 to 122523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,440 DEBUG Processing 659/679 atomic regions from SNP 197588 to 198188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,577 DEBUG Processing 330/565 atomic regions from SNP 98880 to 99480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,614 DEBUG Processing 408/600 atomic regions from SNP 122223 to 122823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,615 DEBUG Processing 415/667 atomic regions from SNP 124386 to 124986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,634 DEBUG Processing 660/679 atomic regions from SNP 197888 to 198488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,763 DEBUG Processing 331/565 atomic regions from SNP 99180 to 99780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,793 DEBUG Processing 409/600 atomic regions from SNP 122523 to 123123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,810 DEBUG Processing 416/667 atomic regions from SNP 124686 to 125286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,830 DEBUG Processing 661/679 atomic regions from SNP 198188 to 198788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,966 DEBUG Processing 332/565 atomic regions from SNP 99480 to 100080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,972 DEBUG Processing 410/600 atomic regions from SNP 122823 to 123423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,006 DEBUG Processing 417/667 atomic regions from SNP 124986 to 125586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,022 DEBUG Processing 662/679 atomic regions from SNP 198488 to 199088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,145 DEBUG Processing 333/565 atomic regions from SNP 99780 to 100380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,165 DEBUG Processing 411/600 atomic regions from SNP 123123 to 123723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,198 DEBUG Processing 418/667 atomic regions from SNP 125286 to 125886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,213 DEBUG Processing 663/679 atomic regions from SNP 198788 to 199388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,320 DEBUG Processing 334/565 atomic regions from SNP 100080 to 100680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,360 DEBUG Processing 412/600 atomic regions from SNP 123423 to 124023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,389 DEBUG Processing 419/667 atomic regions from SNP 125586 to 126186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,405 DEBUG Processing 664/679 atomic regions from SNP 199088 to 199688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,495 DEBUG Processing 335/565 atomic regions from SNP 100380 to 100980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,535 DEBUG Processing 413/600 atomic regions from SNP 123723 to 124323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,590 DEBUG Processing 420/667 atomic regions from SNP 125886 to 126486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,600 DEBUG Processing 665/679 atomic regions from SNP 199388 to 199988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,671 DEBUG Processing 336/565 atomic regions from SNP 100680 to 101280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,723 DEBUG Processing 414/600 atomic regions from SNP 124023 to 124623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,783 DEBUG Processing 421/667 atomic regions from SNP 126186 to 126786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,796 DEBUG Processing 666/679 atomic regions from SNP 199688 to 200288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,847 DEBUG Processing 337/565 atomic regions from SNP 100980 to 101580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,932 DEBUG Processing 415/600 atomic regions from SNP 124323 to 124923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,981 DEBUG Processing 422/667 atomic regions from SNP 126486 to 127086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,994 DEBUG Processing 667/679 atomic regions from SNP 199988 to 200588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,025 DEBUG Processing 338/565 atomic regions from SNP 101280 to 101880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,133 DEBUG Processing 416/600 atomic regions from SNP 124623 to 125223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,195 DEBUG Processing 668/679 atomic regions from SNP 200288 to 200888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,200 DEBUG Processing 423/667 atomic regions from SNP 126786 to 127386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,203 DEBUG Processing 339/565 atomic regions from SNP 101580 to 102180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,313 DEBUG Processing 417/600 atomic regions from SNP 124923 to 125523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,384 DEBUG Processing 340/565 atomic regions from SNP 101880 to 102480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,398 DEBUG Processing 669/679 atomic regions from SNP 200588 to 201188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,408 DEBUG Processing 424/667 atomic regions from SNP 127086 to 127686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,488 DEBUG Processing 418/600 atomic regions from SNP 125223 to 125823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,561 DEBUG Processing 341/565 atomic regions from SNP 102180 to 102780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,595 DEBUG Processing 670/679 atomic regions from SNP 200888 to 201488 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,609 DEBUG Processing 425/667 atomic regions from SNP 127386 to 127986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,663 DEBUG Processing 419/600 atomic regions from SNP 125523 to 126123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,735 DEBUG Processing 342/565 atomic regions from SNP 102480 to 103080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,788 DEBUG Processing 671/679 atomic regions from SNP 201188 to 201788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,806 DEBUG Processing 426/667 atomic regions from SNP 127686 to 128286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,841 DEBUG Processing 420/600 atomic regions from SNP 125823 to 126423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,907 DEBUG Processing 343/565 atomic regions from SNP 102780 to 103380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,980 DEBUG Processing 672/679 atomic regions from SNP 201488 to 202088 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,997 DEBUG Processing 427/667 atomic regions from SNP 127986 to 128586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,031 DEBUG Processing 421/600 atomic regions from SNP 126123 to 126723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,081 DEBUG Processing 344/565 atomic regions from SNP 103080 to 103680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,171 DEBUG Processing 673/679 atomic regions from SNP 201788 to 202388 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,189 DEBUG Processing 428/667 atomic regions from SNP 128286 to 128886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,236 DEBUG Processing 422/600 atomic regions from SNP 126423 to 127023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,256 DEBUG Processing 345/565 atomic regions from SNP 103380 to 103980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,364 DEBUG Processing 674/679 atomic regions from SNP 202088 to 202688 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,384 DEBUG Processing 429/667 atomic regions from SNP 128586 to 129186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,419 DEBUG Processing 423/600 atomic regions from SNP 126723 to 127323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,436 DEBUG Processing 346/565 atomic regions from SNP 103680 to 104280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,557 DEBUG Processing 675/679 atomic regions from SNP 202388 to 202988 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,597 DEBUG Processing 424/600 atomic regions from SNP 127023 to 127623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,601 DEBUG Processing 430/667 atomic regions from SNP 128886 to 129486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,610 DEBUG Processing 347/565 atomic regions from SNP 103980 to 104580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,747 DEBUG Processing 676/679 atomic regions from SNP 202688 to 203288 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,768 DEBUG Processing 425/600 atomic regions from SNP 127323 to 127923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,785 DEBUG Processing 348/565 atomic regions from SNP 104280 to 104880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,821 DEBUG Processing 431/667 atomic regions from SNP 129186 to 129786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,937 DEBUG Processing 677/679 atomic regions from SNP 202988 to 203588 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,943 DEBUG Processing 426/600 atomic regions from SNP 127623 to 128223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,960 DEBUG Processing 349/565 atomic regions from SNP 104580 to 105180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,026 DEBUG Processing 432/667 atomic regions from SNP 129486 to 130086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,136 DEBUG Processing 350/565 atomic regions from SNP 104880 to 105480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,136 DEBUG Processing 427/600 atomic regions from SNP 127923 to 128523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,141 DEBUG Processing 678/679 atomic regions from SNP 203288 to 203888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,239 DEBUG Processing 433/667 atomic regions from SNP 129786 to 130386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,311 DEBUG Processing 351/565 atomic regions from SNP 105180 to 105780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,346 DEBUG Processing 428/600 atomic regions from SNP 128223 to 128823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,359 DEBUG Processing 679/679 atomic regions from SNP 203588 to 204188 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,461 DEBUG Processing 434/667 atomic regions from SNP 130086 to 130686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,486 DEBUG Processing 352/565 atomic regions from SNP 105480 to 106080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,495 DEBUG Unique SNPs positions in subchromosome 1: 204189 2025-01-31 09:54:50,556 DEBUG Processing 429/600 atomic regions from SNP 128523 to 129123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,661 DEBUG Processing 353/565 atomic regions from SNP 105780 to 106380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,677 DEBUG Processing 435/667 atomic regions from SNP 130386 to 130986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,767 DEBUG Processing 430/600 atomic regions from SNP 128823 to 129423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,835 DEBUG Processing 354/565 atomic regions from SNP 106080 to 106680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,884 DEBUG Processing 436/667 atomic regions from SNP 130686 to 131286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,975 DEBUG Processing 431/600 atomic regions from SNP 129123 to 129723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,010 DEBUG Processing 355/565 atomic regions from SNP 106380 to 106980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,087 DEBUG Processing 437/667 atomic regions from SNP 130986 to 131586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,185 DEBUG Processing 356/565 atomic regions from SNP 106680 to 107280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,185 DEBUG Processing 432/600 atomic regions from SNP 129423 to 130023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,278 DEBUG Processing 438/667 atomic regions from SNP 131286 to 131886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,359 DEBUG Processing 357/565 atomic regions from SNP 106980 to 107580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,398 DEBUG Processing 433/600 atomic regions from SNP 129723 to 130323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,469 DEBUG Processing 439/667 atomic regions from SNP 131586 to 132186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,532 DEBUG Processing 358/565 atomic regions from SNP 107280 to 107880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,605 DEBUG Processing 434/600 atomic regions from SNP 130023 to 130623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,661 DEBUG Processing 440/667 atomic regions from SNP 131886 to 132486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,706 DEBUG Processing 359/565 atomic regions from SNP 107580 to 108180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,818 DEBUG Processing 435/600 atomic regions from SNP 130323 to 130923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,855 DEBUG Processing 441/667 atomic regions from SNP 132186 to 132786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,882 DEBUG Processing 360/565 atomic regions from SNP 107880 to 108480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,028 DEBUG Processing 436/600 atomic regions from SNP 130623 to 131223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,053 DEBUG Processing 442/667 atomic regions from SNP 132486 to 133086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,063 DEBUG Processing 361/565 atomic regions from SNP 108180 to 108780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,231 DEBUG Processing 437/600 atomic regions from SNP 130923 to 131523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,240 DEBUG Processing 362/565 atomic regions from SNP 108480 to 109080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,248 DEBUG Processing 443/667 atomic regions from SNP 132786 to 133386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,416 DEBUG Processing 363/565 atomic regions from SNP 108780 to 109380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,438 DEBUG Processing 438/600 atomic regions from SNP 131223 to 131823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,441 DEBUG Processing 444/667 atomic regions from SNP 133086 to 133686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,593 DEBUG Processing 364/565 atomic regions from SNP 109080 to 109680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,623 DEBUG Processing 439/600 atomic regions from SNP 131523 to 132123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,632 DEBUG Processing 445/667 atomic regions from SNP 133386 to 133986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,772 DEBUG Processing 365/565 atomic regions from SNP 109380 to 109980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,831 DEBUG Processing 446/667 atomic regions from SNP 133686 to 134286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,834 DEBUG Processing 440/600 atomic regions from SNP 131823 to 132423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,951 DEBUG Processing 366/565 atomic regions from SNP 109680 to 110280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,026 DEBUG Processing 447/667 atomic regions from SNP 133986 to 134586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,046 DEBUG Processing 441/600 atomic regions from SNP 132123 to 132723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,133 DEBUG Processing 367/565 atomic regions from SNP 109980 to 110580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,219 DEBUG Processing 448/667 atomic regions from SNP 134286 to 134886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,250 DEBUG Processing 442/600 atomic regions from SNP 132423 to 133023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,314 DEBUG Processing 368/565 atomic regions from SNP 110280 to 110880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,436 DEBUG Processing 449/667 atomic regions from SNP 134586 to 135186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,468 DEBUG Processing 443/600 atomic regions from SNP 132723 to 133323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,493 DEBUG Processing 369/565 atomic regions from SNP 110580 to 111180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,646 DEBUG Processing 450/667 atomic regions from SNP 134886 to 135486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,669 DEBUG Processing 370/565 atomic regions from SNP 110880 to 111480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,683 DEBUG Processing 444/600 atomic regions from SNP 133023 to 133623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,844 DEBUG Processing 371/565 atomic regions from SNP 111180 to 111780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,870 DEBUG Processing 451/667 atomic regions from SNP 135186 to 135786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,887 DEBUG Processing 445/600 atomic regions from SNP 133323 to 133923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,018 DEBUG Processing 372/565 atomic regions from SNP 111480 to 112080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,089 DEBUG Processing 446/600 atomic regions from SNP 133623 to 134223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,090 DEBUG Processing 452/667 atomic regions from SNP 135486 to 136086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,190 DEBUG Processing 373/565 atomic regions from SNP 111780 to 112380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,297 DEBUG Processing 447/600 atomic regions from SNP 133923 to 134523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,299 DEBUG Processing 453/667 atomic regions from SNP 135786 to 136386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,363 DEBUG Processing 374/565 atomic regions from SNP 112080 to 112680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,502 DEBUG Processing 454/667 atomic regions from SNP 136086 to 136686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,512 DEBUG Processing 448/600 atomic regions from SNP 134223 to 134823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,537 DEBUG Processing 375/565 atomic regions from SNP 112380 to 112980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,714 DEBUG Processing 376/565 atomic regions from SNP 112680 to 113280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,715 DEBUG Processing 455/667 atomic regions from SNP 136386 to 136986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,731 DEBUG Processing 449/600 atomic regions from SNP 134523 to 135123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,890 DEBUG Processing 377/565 atomic regions from SNP 112980 to 113580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,945 DEBUG Processing 450/600 atomic regions from SNP 134823 to 135423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,947 DEBUG Processing 456/667 atomic regions from SNP 136686 to 137286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,065 DEBUG Processing 378/565 atomic regions from SNP 113280 to 113880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,163 DEBUG Processing 451/600 atomic regions from SNP 135123 to 135723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,176 DEBUG Processing 457/667 atomic regions from SNP 136986 to 137586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,237 DEBUG Processing 379/565 atomic regions from SNP 113580 to 114180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,369 DEBUG Subchromosome time: 165.73541530780494, subchromosome SNPs: 204189 2025-01-31 09:54:55,369 DEBUG Estimated BADs: [1.51, 0.75, 1.51, 10.57, 3.02, 12.08, 0.75, 15.10, 3.02, 1.51, 0.50, 1.51, 4.53, 1.51, 3.02, 1.51, 3.02, 1.51, 4.53, 1.51, 9.06, 0.50, 12.08, 1.51, 7.55, 0.75, 6.04, 0.75, 1.51, 3.02, 1.51, 3.02, 1.51, 0.75, 3.02] SNP counts: [2803, 6954, 21111, 231, 766, 555, 1780, 881, 1736, 2410, 2412, 48837, 2202, 4812, 3019, 5831, 1352, 13137, 1319, 7184, 98, 4655, 101, 1259, 293, 3411, 123, 12302, 11024, 6886, 19886, 2011, 4810, 7209, 789] SNP IDs counts: [2803, 6954, 21111, 231, 766, 555, 1780, 881, 1736, 2410, 2412, 48837, 2202, 4812, 3019, 5831, 1352, 13137, 1319, 7184, 98, 4655, 101, 1259, 293, 3411, 123, 12302, 11024, 6886, 19886, 2011, 4810, 7209, 789] Critical gap: 596304bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.70Mbp, 8.74Mbp, 21.16Mbp, 21.28Mbp, 21.71Mbp, 22.05Mbp, 23.28Mbp, 23.77Mbp, 24.69Mbp, 26.02Mbp, 27.45Mbp, 54.44Mbp, 55.61Mbp, 58.12Mbp, 59.71Mbp, 63.54Mbp, 64.24Mbp, 73.25Mbp, 73.94Mbp, 78.16Mbp, 78.21Mbp, 80.88Mbp, 80.93Mbp, 81.63Mbp, 81.78Mbp, 83.70Mbp, 83.76Mbp, 90.92Mbp, 96.91Mbp, 100.68Mbp, 111.68Mbp, 112.75Mbp, 115.33Mbp, 119.43Mbp, 120.42Mbp] 2025-01-31 09:54:55,369 DEBUG chr13 time: 165.73584873043 s 2025-01-31 09:54:55,375 DEBUG Processing 452/600 atomic regions from SNP 135423 to 136023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,394 DEBUG Processing 458/667 atomic regions from SNP 137286 to 137886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,414 DEBUG Processing 380/565 atomic regions from SNP 113880 to 114480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,497 DEBUG chr13: Fitting background model for 35 segments 2025-01-31 09:54:55,593 DEBUG Processing 381/565 atomic regions from SNP 114180 to 114780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,599 DEBUG Processing 453/600 atomic regions from SNP 135723 to 136323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,611 DEBUG Processing 459/667 atomic regions from SNP 137586 to 138186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,767 DEBUG Processing 382/565 atomic regions from SNP 114480 to 115080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,812 DEBUG Processing 454/600 atomic regions from SNP 136023 to 136623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,830 DEBUG Processing 460/667 atomic regions from SNP 137886 to 138486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,943 DEBUG Processing 383/565 atomic regions from SNP 114780 to 115380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,027 DEBUG Processing 455/600 atomic regions from SNP 136323 to 136923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,041 DEBUG Processing 461/667 atomic regions from SNP 138186 to 138786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,119 DEBUG Processing 384/565 atomic regions from SNP 115080 to 115680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,232 DEBUG Processing 456/600 atomic regions from SNP 136623 to 137223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,261 DEBUG Processing 462/667 atomic regions from SNP 138486 to 139086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,299 DEBUG Processing 385/565 atomic regions from SNP 115380 to 115980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,439 DEBUG Processing 457/600 atomic regions from SNP 136923 to 137523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,478 DEBUG Processing 386/565 atomic regions from SNP 115680 to 116280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,485 DEBUG Processing 463/667 atomic regions from SNP 138786 to 139386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,652 DEBUG Processing 387/565 atomic regions from SNP 115980 to 116580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,653 DEBUG Processing 458/600 atomic regions from SNP 137223 to 137823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,694 DEBUG Processing 464/667 atomic regions from SNP 139086 to 139686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,830 DEBUG Processing 388/565 atomic regions from SNP 116280 to 116880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,867 DEBUG Processing 459/600 atomic regions from SNP 137523 to 138123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,890 DEBUG Processing 465/667 atomic regions from SNP 139386 to 139986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,007 DEBUG Processing 389/565 atomic regions from SNP 116580 to 117180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,076 DEBUG Processing 460/600 atomic regions from SNP 137823 to 138423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,082 DEBUG Processing 466/667 atomic regions from SNP 139686 to 140286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,182 DEBUG Processing 390/565 atomic regions from SNP 116880 to 117480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,277 DEBUG Processing 467/667 atomic regions from SNP 139986 to 140586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,280 DEBUG Processing 461/600 atomic regions from SNP 138123 to 138723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,354 DEBUG Processing 391/565 atomic regions from SNP 117180 to 117780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,472 DEBUG Processing 468/667 atomic regions from SNP 140286 to 140886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,477 DEBUG Processing 462/600 atomic regions from SNP 138423 to 139023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,529 DEBUG Processing 392/565 atomic regions from SNP 117480 to 118080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,667 DEBUG Processing 469/667 atomic regions from SNP 140586 to 141186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,689 DEBUG Processing 463/600 atomic regions from SNP 138723 to 139323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,703 DEBUG Processing 393/565 atomic regions from SNP 117780 to 118380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,857 DEBUG Processing 470/667 atomic regions from SNP 140886 to 141486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,877 DEBUG Processing 394/565 atomic regions from SNP 118080 to 118680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,903 DEBUG Processing 464/600 atomic regions from SNP 139023 to 139623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,049 DEBUG Processing 471/667 atomic regions from SNP 141186 to 141786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,051 DEBUG Processing 395/565 atomic regions from SNP 118380 to 118980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,117 DEBUG Processing 465/600 atomic regions from SNP 139323 to 139923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,227 DEBUG Processing 396/565 atomic regions from SNP 118680 to 119280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,260 DEBUG Processing 472/667 atomic regions from SNP 141486 to 142086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,333 DEBUG Processing 466/600 atomic regions from SNP 139623 to 140223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,406 DEBUG Processing 397/565 atomic regions from SNP 118980 to 119580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,492 DEBUG Processing 473/667 atomic regions from SNP 141786 to 142386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,555 DEBUG Processing 467/600 atomic regions from SNP 139923 to 140523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,579 DEBUG Processing 398/565 atomic regions from SNP 119280 to 119880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,710 DEBUG Processing 474/667 atomic regions from SNP 142086 to 142686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,756 DEBUG Processing 399/565 atomic regions from SNP 119580 to 120180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,770 DEBUG Processing 468/600 atomic regions from SNP 140223 to 140823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,930 DEBUG Processing 475/667 atomic regions from SNP 142386 to 142986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,950 DEBUG Processing 400/565 atomic regions from SNP 119880 to 120480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,982 DEBUG Processing 469/600 atomic regions from SNP 140523 to 141123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,129 DEBUG Processing 401/565 atomic regions from SNP 120180 to 120780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,143 DEBUG Processing 476/667 atomic regions from SNP 142686 to 143286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,166 DEBUG Processing 470/600 atomic regions from SNP 140823 to 141423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,307 DEBUG Processing 402/565 atomic regions from SNP 120480 to 121080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,343 DEBUG Processing 477/667 atomic regions from SNP 142986 to 143586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,347 DEBUG Processing 471/600 atomic regions from SNP 141123 to 141723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,487 DEBUG Processing 403/565 atomic regions from SNP 120780 to 121380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,538 DEBUG Processing 478/667 atomic regions from SNP 143286 to 143886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,549 DEBUG Processing 472/600 atomic regions from SNP 141423 to 142023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,666 DEBUG Processing 404/565 atomic regions from SNP 121080 to 121680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,732 DEBUG Processing 479/667 atomic regions from SNP 143586 to 144186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,764 DEBUG Processing 473/600 atomic regions from SNP 141723 to 142323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,841 DEBUG Processing 405/565 atomic regions from SNP 121380 to 121980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,925 DEBUG Processing 480/667 atomic regions from SNP 143886 to 144486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,979 DEBUG Processing 474/600 atomic regions from SNP 142023 to 142623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,016 DEBUG Processing 406/565 atomic regions from SNP 121680 to 122280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,118 DEBUG Processing 481/667 atomic regions from SNP 144186 to 144786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,190 DEBUG Processing 475/600 atomic regions from SNP 142323 to 142923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,195 DEBUG Processing 407/565 atomic regions from SNP 121980 to 122580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,292 DEBUG Segmenting atomic regions: 2025-01-31 09:55:00,309 DEBUG Processing 482/667 atomic regions from SNP 144486 to 145086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,361 DEBUG Processing 1/536 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:00,373 DEBUG Processing 408/565 atomic regions from SNP 122280 to 122880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,413 DEBUG Processing 476/600 atomic regions from SNP 142623 to 143223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,503 DEBUG Processing 483/667 atomic regions from SNP 144786 to 145386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,545 DEBUG Processing 2/536 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:00,552 DEBUG Processing 409/565 atomic regions from SNP 122580 to 123180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,618 DEBUG Processing 477/600 atomic regions from SNP 142923 to 143523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,697 DEBUG Processing 484/667 atomic regions from SNP 145086 to 145686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,717 DEBUG Processing 3/536 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:00,733 DEBUG Processing 410/565 atomic regions from SNP 122880 to 123480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,807 DEBUG Processing 478/600 atomic regions from SNP 143223 to 143823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,890 DEBUG Processing 485/667 atomic regions from SNP 145386 to 145986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,890 DEBUG Processing 4/536 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:00,911 DEBUG Processing 411/565 atomic regions from SNP 123180 to 123780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,993 DEBUG Processing 479/600 atomic regions from SNP 143523 to 144123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,065 DEBUG Processing 5/536 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,088 DEBUG Processing 486/667 atomic regions from SNP 145686 to 146286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,101 DEBUG Processing 412/565 atomic regions from SNP 123480 to 124080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,208 DEBUG Processing 480/600 atomic regions from SNP 143823 to 144423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,237 DEBUG Processing 6/536 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,282 DEBUG Processing 487/667 atomic regions from SNP 145986 to 146586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,288 DEBUG Processing 413/565 atomic regions from SNP 123780 to 124380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,410 DEBUG Processing 7/536 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,413 DEBUG Processing 481/600 atomic regions from SNP 144123 to 144723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,465 DEBUG Processing 414/565 atomic regions from SNP 124080 to 124680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,475 DEBUG Processing 488/667 atomic regions from SNP 146286 to 146886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,583 DEBUG Processing 8/536 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,604 DEBUG Processing 482/600 atomic regions from SNP 144423 to 145023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,643 DEBUG Processing 415/565 atomic regions from SNP 124380 to 124980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,670 DEBUG Processing 489/667 atomic regions from SNP 146586 to 147186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,680 DEBUG Subchromosome time: 191.66146145574749, subchromosome SNPs: 216595 2025-01-31 09:55:01,680 DEBUG Estimated BADs: [16.70, 3.34, 0.84, 0.56, 1.67, 0.42, 1.67, 0.56, 0.84, 11.69, 1.67, 3.34, 1.67, 16.70, 6.68, 1.67, 16.70, 3.34, 1.67, 3.34, 0.84, 3.34, 1.67, 0.84, 3.34] SNP counts: [150, 6626, 10218, 10491, 10248, 7202, 14158, 11133, 10576, 197, 18194, 3222, 15486, 310, 2974, 7316, 122, 8881, 9424, 9170, 8217, 24173, 6915, 8385, 12807] SNP IDs counts: [150, 6626, 10218, 10491, 10248, 7202, 14158, 11133, 10576, 197, 18194, 3222, 15486, 310, 2974, 7316, 122, 8881, 9424, 9170, 8217, 24173, 6915, 8385, 12807] Critical gap: 586721bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.74Mbp, 12.68Mbp, 18.89Mbp, 24.48Mbp, 28.70Mbp, 36.60Mbp, 42.87Mbp, 48.77Mbp, 48.88Mbp, 58.90Mbp, 60.69Mbp, 68.97Mbp, 69.13Mbp, 70.69Mbp, 74.83Mbp, 74.90Mbp, 79.60Mbp, 84.69Mbp, 89.55Mbp, 94.13Mbp, 106.98Mbp, 110.65Mbp, 115.17Mbp, 122.08Mbp] 2025-01-31 09:55:01,680 DEBUG chr11 time: 191.66197021491826 s 2025-01-31 09:55:01,753 DEBUG Processing 9/536 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,800 DEBUG chr11: Fitting background model for 25 segments 2025-01-31 09:55:01,808 DEBUG Processing 483/600 atomic regions from SNP 144723 to 145323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,821 DEBUG Processing 416/565 atomic regions from SNP 124680 to 125280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,863 DEBUG Processing 490/667 atomic regions from SNP 146886 to 147486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,923 DEBUG Processing 10/536 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,001 DEBUG Processing 417/565 atomic regions from SNP 124980 to 125580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,016 DEBUG Processing 484/600 atomic regions from SNP 145023 to 145623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,059 DEBUG Processing 491/667 atomic regions from SNP 147186 to 147786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,092 DEBUG Processing 11/536 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,179 DEBUG Processing 418/565 atomic regions from SNP 125280 to 125880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,223 DEBUG Processing 485/600 atomic regions from SNP 145323 to 145923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,253 DEBUG Processing 492/667 atomic regions from SNP 147486 to 148086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,261 DEBUG Processing 12/536 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,356 DEBUG Processing 419/565 atomic regions from SNP 125580 to 126180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,414 DEBUG Processing 486/600 atomic regions from SNP 145623 to 146223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,446 DEBUG Processing 13/536 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,447 DEBUG Processing 493/667 atomic regions from SNP 147786 to 148386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,533 DEBUG Processing 420/565 atomic regions from SNP 125880 to 126480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,617 DEBUG Processing 487/600 atomic regions from SNP 145923 to 146523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,624 DEBUG Processing 14/536 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,640 DEBUG Processing 494/667 atomic regions from SNP 148086 to 148686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,706 DEBUG Processing 421/565 atomic regions from SNP 126180 to 126780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,799 DEBUG Processing 15/536 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,817 DEBUG Processing 488/600 atomic regions from SNP 146223 to 146823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,833 DEBUG Processing 495/667 atomic regions from SNP 148386 to 148986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,881 DEBUG Processing 422/565 atomic regions from SNP 126480 to 127080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,985 DEBUG Processing 16/536 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,026 DEBUG Processing 496/667 atomic regions from SNP 148686 to 149286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,031 DEBUG Processing 489/600 atomic regions from SNP 146523 to 147123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,055 DEBUG Processing 423/565 atomic regions from SNP 126780 to 127380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,156 DEBUG Processing 17/536 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,219 DEBUG Processing 497/667 atomic regions from SNP 148986 to 149586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,230 DEBUG Processing 424/565 atomic regions from SNP 127080 to 127680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,241 DEBUG Processing 490/600 atomic regions from SNP 146823 to 147423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,338 DEBUG Processing 18/536 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,405 DEBUG Processing 425/565 atomic regions from SNP 127380 to 127980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,412 DEBUG Processing 498/667 atomic regions from SNP 149286 to 149886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,450 DEBUG Processing 491/600 atomic regions from SNP 147123 to 147723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,522 DEBUG Processing 19/536 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,581 DEBUG Processing 426/565 atomic regions from SNP 127680 to 128280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,623 DEBUG Processing 499/667 atomic regions from SNP 149586 to 150186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,641 DEBUG Processing 492/600 atomic regions from SNP 147423 to 148023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,694 DEBUG Processing 20/536 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,758 DEBUG Processing 427/565 atomic regions from SNP 127980 to 128580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,817 DEBUG Processing 500/667 atomic regions from SNP 149886 to 150486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,845 DEBUG Processing 493/600 atomic regions from SNP 147723 to 148323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,874 DEBUG Processing 21/536 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,940 DEBUG Processing 428/565 atomic regions from SNP 128280 to 128880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,018 DEBUG Processing 501/667 atomic regions from SNP 150186 to 150786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,038 DEBUG Processing 494/600 atomic regions from SNP 148023 to 148623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,079 DEBUG Processing 22/536 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,124 DEBUG Processing 429/565 atomic regions from SNP 128580 to 129180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,221 DEBUG Processing 502/667 atomic regions from SNP 150486 to 151086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,224 DEBUG Processing 495/600 atomic regions from SNP 148323 to 148923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,255 DEBUG Processing 23/536 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,302 DEBUG Processing 430/565 atomic regions from SNP 128880 to 129480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,405 DEBUG Processing 496/600 atomic regions from SNP 148623 to 149223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,417 DEBUG Processing 503/667 atomic regions from SNP 150786 to 151386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,429 DEBUG Processing 24/536 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,479 DEBUG Processing 431/565 atomic regions from SNP 129180 to 129780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,587 DEBUG Processing 497/600 atomic regions from SNP 148923 to 149523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,603 DEBUG Processing 25/536 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,615 DEBUG Processing 504/667 atomic regions from SNP 151086 to 151686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,656 DEBUG Processing 432/565 atomic regions from SNP 129480 to 130080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,772 DEBUG Processing 498/600 atomic regions from SNP 149223 to 149823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,776 DEBUG Processing 26/536 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,810 DEBUG Processing 505/667 atomic regions from SNP 151386 to 151986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,832 DEBUG Processing 433/565 atomic regions from SNP 129780 to 130380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,945 DEBUG Processing 27/536 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,955 DEBUG Processing 499/600 atomic regions from SNP 149523 to 150123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,003 DEBUG Processing 506/667 atomic regions from SNP 151686 to 152286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,010 DEBUG Processing 434/565 atomic regions from SNP 130080 to 130680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,132 DEBUG Processing 28/536 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,142 DEBUG Processing 500/600 atomic regions from SNP 149823 to 150423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,198 DEBUG Processing 435/565 atomic regions from SNP 130380 to 130980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,199 DEBUG Processing 507/667 atomic regions from SNP 151986 to 152586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,303 DEBUG Processing 29/536 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,329 DEBUG Processing 501/600 atomic regions from SNP 150123 to 150723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,388 DEBUG Processing 436/565 atomic regions from SNP 130680 to 131280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,393 DEBUG Processing 508/667 atomic regions from SNP 152286 to 152886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,473 DEBUG Processing 30/536 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,515 DEBUG Processing 502/600 atomic regions from SNP 150423 to 151023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,567 DEBUG Processing 437/565 atomic regions from SNP 130980 to 131580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,587 DEBUG Processing 509/667 atomic regions from SNP 152586 to 153186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,641 DEBUG Processing 31/536 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,702 DEBUG Processing 503/600 atomic regions from SNP 150723 to 151323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,746 DEBUG Processing 438/565 atomic regions from SNP 131280 to 131880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,784 DEBUG Processing 510/667 atomic regions from SNP 152886 to 153486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,812 DEBUG Processing 32/536 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,885 DEBUG Processing 504/600 atomic regions from SNP 151023 to 151623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,936 DEBUG Processing 439/565 atomic regions from SNP 131580 to 132180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,980 DEBUG Processing 511/667 atomic regions from SNP 153186 to 153786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,984 DEBUG Processing 33/536 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,070 DEBUG Processing 505/600 atomic regions from SNP 151323 to 151923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,136 DEBUG Processing 440/565 atomic regions from SNP 131880 to 132480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,155 DEBUG Processing 34/536 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,174 DEBUG Processing 512/667 atomic regions from SNP 153486 to 154086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,254 DEBUG Processing 506/600 atomic regions from SNP 151623 to 152223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,312 DEBUG Processing 441/565 atomic regions from SNP 132180 to 132780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,326 DEBUG Processing 35/536 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,366 DEBUG Processing 513/667 atomic regions from SNP 153786 to 154386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,436 DEBUG Processing 507/600 atomic regions from SNP 151923 to 152523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,487 DEBUG Processing 442/565 atomic regions from SNP 132480 to 133080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,499 DEBUG Processing 36/536 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,557 DEBUG Processing 514/667 atomic regions from SNP 154086 to 154686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,630 DEBUG Processing 508/600 atomic regions from SNP 152223 to 152823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,665 DEBUG Processing 443/565 atomic regions from SNP 132780 to 133380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,668 DEBUG Processing 37/536 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,751 DEBUG Processing 515/667 atomic regions from SNP 154386 to 154986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,841 DEBUG Processing 38/536 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,844 DEBUG Processing 509/600 atomic regions from SNP 152523 to 153123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,844 DEBUG Processing 444/565 atomic regions from SNP 133080 to 133680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,952 DEBUG Processing 516/667 atomic regions from SNP 154686 to 155286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,020 DEBUG Processing 39/536 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,027 DEBUG Processing 445/565 atomic regions from SNP 133380 to 133980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,059 DEBUG Processing 510/600 atomic regions from SNP 152823 to 153423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,141 DEBUG Processing 517/667 atomic regions from SNP 154986 to 155586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,189 DEBUG Processing 40/536 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,202 DEBUG Processing 446/565 atomic regions from SNP 133680 to 134280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,274 DEBUG Processing 511/600 atomic regions from SNP 153123 to 153723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,333 DEBUG Processing 518/667 atomic regions from SNP 155286 to 155886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,365 DEBUG Processing 41/536 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,378 DEBUG Processing 447/565 atomic regions from SNP 133980 to 134580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,496 DEBUG Processing 512/600 atomic regions from SNP 153423 to 154023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,530 DEBUG Processing 519/667 atomic regions from SNP 155586 to 156186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,542 DEBUG Processing 42/536 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,559 DEBUG Processing 448/565 atomic regions from SNP 134280 to 134880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,711 DEBUG Processing 513/600 atomic regions from SNP 153723 to 154323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,717 DEBUG Processing 43/536 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,728 DEBUG Processing 520/667 atomic regions from SNP 155886 to 156486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,741 DEBUG Processing 449/565 atomic regions from SNP 134580 to 135180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,889 DEBUG Processing 44/536 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,899 DEBUG Processing 514/600 atomic regions from SNP 154023 to 154623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,918 DEBUG Processing 450/565 atomic regions from SNP 134880 to 135480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,922 DEBUG Processing 521/667 atomic regions from SNP 156186 to 156786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,059 DEBUG Processing 45/536 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,079 DEBUG Processing 515/600 atomic regions from SNP 154323 to 154923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,095 DEBUG Processing 451/565 atomic regions from SNP 135180 to 135780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,112 DEBUG Processing 522/667 atomic regions from SNP 156486 to 157086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,226 DEBUG Processing 46/536 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,262 DEBUG Processing 516/600 atomic regions from SNP 154623 to 155223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,271 DEBUG Processing 452/565 atomic regions from SNP 135480 to 136080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,304 DEBUG Processing 523/667 atomic regions from SNP 156786 to 157386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,395 DEBUG Processing 47/536 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,447 DEBUG Processing 517/600 atomic regions from SNP 154923 to 155523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,449 DEBUG Processing 453/565 atomic regions from SNP 135780 to 136380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,494 DEBUG Processing 524/667 atomic regions from SNP 157086 to 157686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,563 DEBUG Processing 48/536 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,624 DEBUG Processing 454/565 atomic regions from SNP 136080 to 136680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,631 DEBUG Processing 518/600 atomic regions from SNP 155223 to 155823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,687 DEBUG Processing 525/667 atomic regions from SNP 157386 to 157986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,732 DEBUG Processing 49/536 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,803 DEBUG Processing 455/565 atomic regions from SNP 136380 to 136980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,821 DEBUG Processing 519/600 atomic regions from SNP 155523 to 156123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,878 DEBUG Processing 526/667 atomic regions from SNP 157686 to 158286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,899 DEBUG Processing 50/536 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,980 DEBUG Processing 456/565 atomic regions from SNP 136680 to 137280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,016 DEBUG Processing 520/600 atomic regions from SNP 155823 to 156423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,068 DEBUG Processing 51/536 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:09,074 DEBUG Processing 527/667 atomic regions from SNP 157986 to 158586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,156 DEBUG Processing 457/565 atomic regions from SNP 136980 to 137580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,202 DEBUG Processing 521/600 atomic regions from SNP 156123 to 156723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,241 DEBUG Processing 52/536 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:09,270 DEBUG Processing 528/667 atomic regions from SNP 158286 to 158886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,334 DEBUG Processing 458/565 atomic regions from SNP 137280 to 137880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,389 DEBUG Processing 522/600 atomic regions from SNP 156423 to 157023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,415 DEBUG Processing 53/536 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:09,466 DEBUG Processing 529/667 atomic regions from SNP 158586 to 159186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,513 DEBUG Processing 459/565 atomic regions from SNP 137580 to 138180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,573 DEBUG Processing 523/600 atomic regions from SNP 156723 to 157323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,590 DEBUG Processing 54/536 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:09,661 DEBUG Processing 530/667 atomic regions from SNP 158886 to 159486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,688 DEBUG Processing 460/565 atomic regions from SNP 137880 to 138480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,750 DEBUG Processing 524/600 atomic regions from SNP 157023 to 157623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,757 DEBUG Processing 55/536 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:09,854 DEBUG Processing 531/667 atomic regions from SNP 159186 to 159786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,863 DEBUG Processing 461/565 atomic regions from SNP 138180 to 138780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,928 DEBUG Processing 525/600 atomic regions from SNP 157323 to 157923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,937 DEBUG Processing 56/536 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:10,041 DEBUG Processing 462/565 atomic regions from SNP 138480 to 139080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,048 DEBUG Processing 532/667 atomic regions from SNP 159486 to 160086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,111 DEBUG Processing 526/600 atomic regions from SNP 157623 to 158223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,122 DEBUG Processing 57/536 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:10,217 DEBUG Processing 463/565 atomic regions from SNP 138780 to 139380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,243 DEBUG Processing 533/667 atomic regions from SNP 159786 to 160386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,292 DEBUG Processing 58/536 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:10,295 DEBUG Processing 527/600 atomic regions from SNP 157923 to 158523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,392 DEBUG Processing 464/565 atomic regions from SNP 139080 to 139680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,437 DEBUG Processing 534/667 atomic regions from SNP 160086 to 160686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,462 DEBUG Processing 59/536 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:10,479 DEBUG Processing 528/600 atomic regions from SNP 158223 to 158823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,566 DEBUG Processing 465/565 atomic regions from SNP 139380 to 139980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,633 DEBUG Processing 60/536 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:10,633 DEBUG Processing 535/667 atomic regions from SNP 160386 to 160986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,664 DEBUG Processing 529/600 atomic regions from SNP 158523 to 159123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,742 DEBUG Processing 466/565 atomic regions from SNP 139680 to 140280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,802 DEBUG Processing 61/536 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:10,830 DEBUG Processing 536/667 atomic regions from SNP 160686 to 161286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,857 DEBUG Processing 530/600 atomic regions from SNP 158823 to 159423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,916 DEBUG Processing 467/565 atomic regions from SNP 139980 to 140580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,972 DEBUG Processing 62/536 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,022 DEBUG Processing 537/667 atomic regions from SNP 160986 to 161586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,040 DEBUG Processing 531/600 atomic regions from SNP 159123 to 159723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,091 DEBUG Processing 468/565 atomic regions from SNP 140280 to 140880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,142 DEBUG Processing 63/536 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,215 DEBUG Processing 538/667 atomic regions from SNP 161286 to 161886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,226 DEBUG Processing 532/600 atomic regions from SNP 159423 to 160023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,268 DEBUG Processing 469/565 atomic regions from SNP 140580 to 141180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,309 DEBUG Processing 64/536 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,408 DEBUG Processing 539/667 atomic regions from SNP 161586 to 162186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,409 DEBUG Processing 533/600 atomic regions from SNP 159723 to 160323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,448 DEBUG Processing 470/565 atomic regions from SNP 140880 to 141480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,484 DEBUG Processing 65/536 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,598 DEBUG Processing 534/600 atomic regions from SNP 160023 to 160623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,625 DEBUG Processing 540/667 atomic regions from SNP 161886 to 162486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,626 DEBUG Processing 471/565 atomic regions from SNP 141180 to 141780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,669 DEBUG Processing 66/536 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,781 DEBUG Processing 535/600 atomic regions from SNP 160323 to 160923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,806 DEBUG Processing 472/565 atomic regions from SNP 141480 to 142080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,838 DEBUG Processing 541/667 atomic regions from SNP 162186 to 162786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,845 DEBUG Processing 67/536 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,979 DEBUG Processing 536/600 atomic regions from SNP 160623 to 161223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,985 DEBUG Processing 473/565 atomic regions from SNP 141780 to 142380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,020 DEBUG Processing 68/536 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:12,033 DEBUG Processing 542/667 atomic regions from SNP 162486 to 163086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,161 DEBUG Processing 474/565 atomic regions from SNP 142080 to 142680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,180 DEBUG Processing 537/600 atomic regions from SNP 160923 to 161523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,197 DEBUG Processing 69/536 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:12,232 DEBUG Processing 543/667 atomic regions from SNP 162786 to 163386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,339 DEBUG Processing 475/565 atomic regions from SNP 142380 to 142980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,366 DEBUG Processing 70/536 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:12,373 DEBUG Processing 538/600 atomic regions from SNP 161223 to 161823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,448 DEBUG Processing 544/667 atomic regions from SNP 163086 to 163686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,516 DEBUG Processing 476/565 atomic regions from SNP 142680 to 143280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,538 DEBUG Processing 71/536 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:12,562 DEBUG Processing 539/600 atomic regions from SNP 161523 to 162123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,663 DEBUG Processing 545/667 atomic regions from SNP 163386 to 163986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,695 DEBUG Processing 477/565 atomic regions from SNP 142980 to 143580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,708 DEBUG Processing 72/536 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:12,740 DEBUG Processing 540/600 atomic regions from SNP 161823 to 162423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,857 DEBUG Processing 546/667 atomic regions from SNP 163686 to 164286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,871 DEBUG Processing 478/565 atomic regions from SNP 143280 to 143880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,883 DEBUG Processing 73/536 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:12,927 DEBUG Processing 541/600 atomic regions from SNP 162123 to 162723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,053 DEBUG Processing 479/565 atomic regions from SNP 143580 to 144180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,058 DEBUG Processing 74/536 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,061 DEBUG Processing 547/667 atomic regions from SNP 163986 to 164586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,110 DEBUG Processing 542/600 atomic regions from SNP 162423 to 163023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,230 DEBUG Processing 75/536 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,232 DEBUG Processing 480/565 atomic regions from SNP 143880 to 144480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,270 DEBUG Processing 548/667 atomic regions from SNP 164286 to 164886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,294 DEBUG Processing 543/600 atomic regions from SNP 162723 to 163323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,401 DEBUG Processing 76/536 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,408 DEBUG Processing 481/565 atomic regions from SNP 144180 to 144780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,483 DEBUG Processing 549/667 atomic regions from SNP 164586 to 165186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,486 DEBUG Processing 544/600 atomic regions from SNP 163023 to 163623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,568 DEBUG Processing 77/536 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,585 DEBUG Processing 482/565 atomic regions from SNP 144480 to 145080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,680 DEBUG Processing 545/600 atomic regions from SNP 163323 to 163923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,706 DEBUG Processing 550/667 atomic regions from SNP 164886 to 165486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,738 DEBUG Processing 78/536 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,760 DEBUG Processing 483/565 atomic regions from SNP 144780 to 145380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,863 DEBUG Processing 546/600 atomic regions from SNP 163623 to 164223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,910 DEBUG Processing 79/536 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,913 DEBUG Processing 551/667 atomic regions from SNP 165186 to 165786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,937 DEBUG Processing 484/565 atomic regions from SNP 145080 to 145680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,052 DEBUG Processing 547/600 atomic regions from SNP 163923 to 164523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,084 DEBUG Processing 80/536 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,119 DEBUG Processing 552/667 atomic regions from SNP 165486 to 166086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,130 DEBUG Processing 485/565 atomic regions from SNP 145380 to 145980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,235 DEBUG Processing 548/600 atomic regions from SNP 164223 to 164823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,256 DEBUG Processing 81/536 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,312 DEBUG Processing 486/565 atomic regions from SNP 145680 to 146280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,340 DEBUG Processing 553/667 atomic regions from SNP 165786 to 166386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,412 DEBUG Processing 549/600 atomic regions from SNP 164523 to 165123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,426 DEBUG Processing 82/536 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,491 DEBUG Processing 487/565 atomic regions from SNP 145980 to 146580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,553 DEBUG Processing 554/667 atomic regions from SNP 166086 to 166686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,600 DEBUG Processing 83/536 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,603 DEBUG Processing 550/600 atomic regions from SNP 164823 to 165423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,668 DEBUG Processing 488/565 atomic regions from SNP 146280 to 146880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,769 DEBUG Processing 84/536 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,769 DEBUG Processing 555/667 atomic regions from SNP 166386 to 166986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,788 DEBUG Processing 551/600 atomic regions from SNP 165123 to 165723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,842 DEBUG Processing 489/565 atomic regions from SNP 146580 to 147180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,939 DEBUG Processing 85/536 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,963 DEBUG Processing 556/667 atomic regions from SNP 166686 to 167286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,974 DEBUG Processing 552/600 atomic regions from SNP 165423 to 166023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,019 DEBUG Processing 490/565 atomic regions from SNP 146880 to 147480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,109 DEBUG Processing 86/536 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,154 DEBUG Processing 557/667 atomic regions from SNP 166986 to 167586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,157 DEBUG Processing 553/600 atomic regions from SNP 165723 to 166323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,194 DEBUG Processing 491/565 atomic regions from SNP 147180 to 147780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,277 DEBUG Processing 87/536 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,346 DEBUG Processing 554/600 atomic regions from SNP 166023 to 166623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,348 DEBUG Processing 558/667 atomic regions from SNP 167286 to 167886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,371 DEBUG Processing 492/565 atomic regions from SNP 147480 to 148080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,446 DEBUG Processing 88/536 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,540 DEBUG Processing 559/667 atomic regions from SNP 167586 to 168186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,546 DEBUG Processing 493/565 atomic regions from SNP 147780 to 148380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,554 DEBUG Processing 555/600 atomic regions from SNP 166323 to 166923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,613 DEBUG Processing 89/536 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,724 DEBUG Processing 494/565 atomic regions from SNP 148080 to 148680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,747 DEBUG Processing 556/600 atomic regions from SNP 166623 to 167223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,754 DEBUG Processing 560/667 atomic regions from SNP 167886 to 168486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,780 DEBUG Processing 90/536 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,905 DEBUG Processing 495/565 atomic regions from SNP 148380 to 148980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,951 DEBUG Processing 91/536 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,952 DEBUG Processing 557/600 atomic regions from SNP 166923 to 167523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,959 DEBUG Processing 561/667 atomic regions from SNP 168186 to 168786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,083 DEBUG Processing 496/565 atomic regions from SNP 148680 to 149280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,124 DEBUG Processing 92/536 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,153 DEBUG Processing 562/667 atomic regions from SNP 168486 to 169086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,157 DEBUG Processing 558/600 atomic regions from SNP 167223 to 167823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,259 DEBUG Processing 497/565 atomic regions from SNP 148980 to 149580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,294 DEBUG Processing 93/536 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,341 DEBUG Processing 559/600 atomic regions from SNP 167523 to 168123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,366 DEBUG Processing 563/667 atomic regions from SNP 168786 to 169386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,438 DEBUG Processing 498/565 atomic regions from SNP 149280 to 149880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,467 DEBUG Processing 94/536 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,521 DEBUG Processing 560/600 atomic regions from SNP 167823 to 168423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,575 DEBUG Processing 564/667 atomic regions from SNP 169086 to 169686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,618 DEBUG Processing 499/565 atomic regions from SNP 149580 to 150180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,643 DEBUG Processing 95/536 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,710 DEBUG Processing 561/600 atomic regions from SNP 168123 to 168723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,797 DEBUG Processing 565/667 atomic regions from SNP 169386 to 169986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,811 DEBUG Processing 500/565 atomic regions from SNP 149880 to 150480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,821 DEBUG Processing 96/536 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,901 DEBUG Processing 562/600 atomic regions from SNP 168423 to 169023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,000 DEBUG Processing 97/536 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,007 DEBUG Processing 566/667 atomic regions from SNP 169686 to 170286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,013 DEBUG Processing 501/565 atomic regions from SNP 150180 to 150780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,084 DEBUG Processing 563/600 atomic regions from SNP 168723 to 169323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,174 DEBUG Processing 98/536 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,203 DEBUG Processing 567/667 atomic regions from SNP 169986 to 170586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,216 DEBUG Processing 502/565 atomic regions from SNP 150480 to 151080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,282 DEBUG Processing 564/600 atomic regions from SNP 169023 to 169623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,343 DEBUG Processing 99/536 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,403 DEBUG Processing 568/667 atomic regions from SNP 170286 to 170886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,403 DEBUG Processing 503/565 atomic regions from SNP 150780 to 151380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,475 DEBUG Processing 565/600 atomic regions from SNP 169323 to 169923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,509 DEBUG Processing 100/536 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,580 DEBUG Processing 504/565 atomic regions from SNP 151080 to 151680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,618 DEBUG Processing 569/667 atomic regions from SNP 170586 to 171186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,677 DEBUG Processing 101/536 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,688 DEBUG Processing 566/600 atomic regions from SNP 169623 to 170223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,759 DEBUG Processing 505/565 atomic regions from SNP 151380 to 151980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,822 DEBUG Processing 570/667 atomic regions from SNP 170886 to 171486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,849 DEBUG Processing 102/536 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,886 DEBUG Processing 567/600 atomic regions from SNP 169923 to 170523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,932 DEBUG Processing 506/565 atomic regions from SNP 151680 to 152280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,015 DEBUG Processing 571/667 atomic regions from SNP 171186 to 171786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,016 DEBUG Processing 103/536 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,087 DEBUG Processing 568/600 atomic regions from SNP 170223 to 170823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,108 DEBUG Processing 507/565 atomic regions from SNP 151980 to 152580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,184 DEBUG Processing 104/536 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,209 DEBUG Processing 572/667 atomic regions from SNP 171486 to 172086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,281 DEBUG Processing 508/565 atomic regions from SNP 152280 to 152880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,308 DEBUG Processing 569/600 atomic regions from SNP 170523 to 171123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,352 DEBUG Processing 105/536 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,400 DEBUG Processing 573/667 atomic regions from SNP 171786 to 172386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,457 DEBUG Processing 509/565 atomic regions from SNP 152580 to 153180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,517 DEBUG Processing 106/536 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,530 DEBUG Processing 570/600 atomic regions from SNP 170823 to 171423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,591 DEBUG Processing 574/667 atomic regions from SNP 172086 to 172686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,633 DEBUG Processing 510/565 atomic regions from SNP 152880 to 153480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,685 DEBUG Processing 107/536 atomic regions from SNP 31906 to 32507 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,752 DEBUG Processing 571/600 atomic regions from SNP 171123 to 171723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,783 DEBUG Processing 575/667 atomic regions from SNP 172386 to 172986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,810 DEBUG Processing 511/565 atomic regions from SNP 153180 to 153780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,853 DEBUG Processing 108/536 atomic regions from SNP 32207 to 32808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,976 DEBUG Processing 572/600 atomic regions from SNP 171423 to 172023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,979 DEBUG Processing 576/667 atomic regions from SNP 172686 to 173286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,000 DEBUG Processing 512/565 atomic regions from SNP 153480 to 154080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,028 DEBUG Processing 109/536 atomic regions from SNP 32508 to 33109 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,180 DEBUG Processing 513/565 atomic regions from SNP 153780 to 154380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,184 DEBUG Processing 577/667 atomic regions from SNP 172986 to 173586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,196 DEBUG Processing 573/600 atomic regions from SNP 171723 to 172323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,200 DEBUG Processing 110/536 atomic regions from SNP 32809 to 33410 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,357 DEBUG Processing 514/565 atomic regions from SNP 154080 to 154680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,400 DEBUG Processing 111/536 atomic regions from SNP 33110 to 33711 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,400 DEBUG Processing 578/667 atomic regions from SNP 173286 to 173886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,415 DEBUG Processing 574/600 atomic regions from SNP 172023 to 172623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,549 DEBUG Processing 515/565 atomic regions from SNP 154380 to 154980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,603 DEBUG Processing 112/536 atomic regions from SNP 33411 to 34012 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,623 DEBUG Processing 579/667 atomic regions from SNP 173586 to 174186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,633 DEBUG Processing 575/600 atomic regions from SNP 172323 to 172923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,738 DEBUG Processing 516/565 atomic regions from SNP 154680 to 155280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,796 DEBUG Processing 113/536 atomic regions from SNP 33712 to 34313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,816 DEBUG Processing 580/667 atomic regions from SNP 173886 to 174486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,849 DEBUG Processing 576/600 atomic regions from SNP 172623 to 173223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,943 DEBUG Processing 517/565 atomic regions from SNP 154980 to 155580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,980 DEBUG Processing 114/536 atomic regions from SNP 34013 to 34614 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,007 DEBUG Processing 581/667 atomic regions from SNP 174186 to 174786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,054 DEBUG Processing 577/600 atomic regions from SNP 172923 to 173523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,140 DEBUG Processing 518/565 atomic regions from SNP 155280 to 155880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,181 DEBUG Processing 115/536 atomic regions from SNP 34314 to 34915 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,208 DEBUG Processing 582/667 atomic regions from SNP 174486 to 175086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,270 DEBUG Processing 578/600 atomic regions from SNP 173223 to 173823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,326 DEBUG Processing 519/565 atomic regions from SNP 155580 to 156180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,381 DEBUG Processing 116/536 atomic regions from SNP 34615 to 35216 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,422 DEBUG Processing 583/667 atomic regions from SNP 174786 to 175386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,483 DEBUG Processing 579/600 atomic regions from SNP 173523 to 174123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,521 DEBUG Processing 520/565 atomic regions from SNP 155880 to 156480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,587 DEBUG Processing 117/536 atomic regions from SNP 34916 to 35517 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,638 DEBUG Processing 584/667 atomic regions from SNP 175086 to 175686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,704 DEBUG Processing 580/600 atomic regions from SNP 173823 to 174423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,739 DEBUG Processing 521/565 atomic regions from SNP 156180 to 156780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,789 DEBUG Processing 118/536 atomic regions from SNP 35217 to 35818 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,858 DEBUG Processing 585/667 atomic regions from SNP 175386 to 175986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,920 DEBUG Processing 581/600 atomic regions from SNP 174123 to 174723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,948 DEBUG Processing 522/565 atomic regions from SNP 156480 to 157080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,988 DEBUG Processing 119/536 atomic regions from SNP 35518 to 36119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,050 DEBUG Processing 586/667 atomic regions from SNP 175686 to 176286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,132 DEBUG Processing 582/600 atomic regions from SNP 174423 to 175023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,149 DEBUG Processing 523/565 atomic regions from SNP 156780 to 157380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,185 DEBUG Processing 120/536 atomic regions from SNP 35819 to 36420 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,241 DEBUG Processing 587/667 atomic regions from SNP 175986 to 176586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,326 DEBUG Processing 583/600 atomic regions from SNP 174723 to 175323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,348 DEBUG Processing 524/565 atomic regions from SNP 157080 to 157680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,383 DEBUG Processing 121/536 atomic regions from SNP 36120 to 36721 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,430 DEBUG Processing 588/667 atomic regions from SNP 176286 to 176886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,511 DEBUG Processing 584/600 atomic regions from SNP 175023 to 175623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,556 DEBUG Processing 525/565 atomic regions from SNP 157380 to 157980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,576 DEBUG Processing 122/536 atomic regions from SNP 36421 to 37022 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,619 DEBUG Processing 589/667 atomic regions from SNP 176586 to 177186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,708 DEBUG Processing 585/600 atomic regions from SNP 175323 to 175923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,767 DEBUG Processing 123/536 atomic regions from SNP 36722 to 37323 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,776 DEBUG Processing 526/565 atomic regions from SNP 157680 to 158280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,815 DEBUG Processing 590/667 atomic regions from SNP 176886 to 177486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,926 DEBUG Processing 586/600 atomic regions from SNP 175623 to 176223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,960 DEBUG Processing 124/536 atomic regions from SNP 37023 to 37624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,990 DEBUG Processing 527/565 atomic regions from SNP 157980 to 158580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,007 DEBUG Processing 591/667 atomic regions from SNP 177186 to 177786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,117 DEBUG Processing 587/600 atomic regions from SNP 175923 to 176523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,164 DEBUG Processing 125/536 atomic regions from SNP 37324 to 37925 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,198 DEBUG Processing 592/667 atomic regions from SNP 177486 to 178086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,202 DEBUG Processing 528/565 atomic regions from SNP 158280 to 158880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,297 DEBUG Processing 588/600 atomic regions from SNP 176223 to 176823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,368 DEBUG Processing 126/536 atomic regions from SNP 37625 to 38226 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,393 DEBUG Processing 593/667 atomic regions from SNP 177786 to 178386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,404 DEBUG Processing 529/565 atomic regions from SNP 158580 to 159180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,480 DEBUG Processing 589/600 atomic regions from SNP 176523 to 177123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,567 DEBUG Processing 127/536 atomic regions from SNP 37926 to 38527 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,588 DEBUG Processing 594/667 atomic regions from SNP 178086 to 178686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,605 DEBUG Processing 530/565 atomic regions from SNP 158880 to 159480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,677 DEBUG Processing 590/600 atomic regions from SNP 176823 to 177423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,762 DEBUG Processing 128/536 atomic regions from SNP 38227 to 38828 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,785 DEBUG Processing 595/667 atomic regions from SNP 178386 to 178986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,818 DEBUG Processing 531/565 atomic regions from SNP 159180 to 159780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,894 DEBUG Processing 591/600 atomic regions from SNP 177123 to 177723 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,949 DEBUG Processing 129/536 atomic regions from SNP 38528 to 39129 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,979 DEBUG Processing 596/667 atomic regions from SNP 178686 to 179286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,024 DEBUG Processing 532/565 atomic regions from SNP 159480 to 160080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,112 DEBUG Processing 592/600 atomic regions from SNP 177423 to 178023 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,141 DEBUG Processing 130/536 atomic regions from SNP 38829 to 39430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,171 DEBUG Processing 597/667 atomic regions from SNP 178986 to 179586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,233 DEBUG Processing 533/565 atomic regions from SNP 159780 to 160380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,337 DEBUG Processing 593/600 atomic regions from SNP 177723 to 178323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,338 DEBUG Processing 131/536 atomic regions from SNP 39130 to 39731 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,366 DEBUG Processing 598/667 atomic regions from SNP 179286 to 179886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,442 DEBUG Processing 534/565 atomic regions from SNP 160080 to 160680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,540 DEBUG Processing 132/536 atomic regions from SNP 39431 to 40032 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,555 DEBUG Processing 594/600 atomic regions from SNP 178023 to 178623 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,567 DEBUG Processing 599/667 atomic regions from SNP 179586 to 180186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,629 DEBUG Processing 535/565 atomic regions from SNP 160380 to 160980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,743 DEBUG Processing 133/536 atomic regions from SNP 39732 to 40333 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,760 DEBUG Processing 600/667 atomic regions from SNP 179886 to 180486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,762 DEBUG Processing 595/600 atomic regions from SNP 178323 to 178923 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,829 DEBUG Processing 536/565 atomic regions from SNP 160680 to 161280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,944 DEBUG Processing 134/536 atomic regions from SNP 40033 to 40634 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,955 DEBUG Processing 596/600 atomic regions from SNP 178623 to 179223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,956 DEBUG Processing 601/667 atomic regions from SNP 180186 to 180786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,012 DEBUG Processing 537/565 atomic regions from SNP 160980 to 161580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,124 DEBUG Processing 135/536 atomic regions from SNP 40334 to 40935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,154 DEBUG Processing 597/600 atomic regions from SNP 178923 to 179523 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,164 DEBUG Processing 602/667 atomic regions from SNP 180486 to 181086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,200 DEBUG Processing 538/565 atomic regions from SNP 161280 to 161880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,324 DEBUG Processing 136/536 atomic regions from SNP 40635 to 41236 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,364 DEBUG Processing 598/600 atomic regions from SNP 179223 to 179823 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,376 DEBUG Processing 603/667 atomic regions from SNP 180786 to 181386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,403 DEBUG Processing 539/565 atomic regions from SNP 161580 to 162180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,526 DEBUG Processing 137/536 atomic regions from SNP 40936 to 41537 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,572 DEBUG Processing 604/667 atomic regions from SNP 181086 to 181686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,574 DEBUG Processing 599/600 atomic regions from SNP 179523 to 180123 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,615 DEBUG Processing 540/565 atomic regions from SNP 161880 to 162480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,723 DEBUG Processing 138/536 atomic regions from SNP 41237 to 41838 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,757 DEBUG Processing 600/600 atomic regions from SNP 179823 to 180423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,765 DEBUG Processing 605/667 atomic regions from SNP 181386 to 181986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,823 DEBUG Processing 541/565 atomic regions from SNP 162180 to 162780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,857 DEBUG Unique SNPs positions in subchromosome 1: 180424 2025-01-31 09:55:24,910 DEBUG Processing 139/536 atomic regions from SNP 41538 to 42139 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,958 DEBUG Processing 606/667 atomic regions from SNP 181686 to 182286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,024 DEBUG Processing 542/565 atomic regions from SNP 162480 to 163080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,104 DEBUG Processing 140/536 atomic regions from SNP 41839 to 42440 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,148 DEBUG Processing 607/667 atomic regions from SNP 181986 to 182586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,235 DEBUG Processing 543/565 atomic regions from SNP 162780 to 163380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,305 DEBUG Processing 141/536 atomic regions from SNP 42140 to 42741 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,338 DEBUG Processing 608/667 atomic regions from SNP 182286 to 182886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,441 DEBUG Processing 544/565 atomic regions from SNP 163080 to 163680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,497 DEBUG Processing 142/536 atomic regions from SNP 42441 to 43042 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,529 DEBUG Processing 609/667 atomic regions from SNP 182586 to 183186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,643 DEBUG Processing 545/565 atomic regions from SNP 163380 to 163980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,688 DEBUG Processing 143/536 atomic regions from SNP 42742 to 43343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,721 DEBUG Processing 610/667 atomic regions from SNP 182886 to 183486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,833 DEBUG Processing 546/565 atomic regions from SNP 163680 to 164280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,885 DEBUG Processing 144/536 atomic regions from SNP 43043 to 43644 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,914 DEBUG Processing 611/667 atomic regions from SNP 183186 to 183786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,016 DEBUG Processing 547/565 atomic regions from SNP 163980 to 164580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,086 DEBUG Processing 145/536 atomic regions from SNP 43344 to 43945 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,118 DEBUG Processing 612/667 atomic regions from SNP 183486 to 184086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,193 DEBUG Processing 548/565 atomic regions from SNP 164280 to 164880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,282 DEBUG Processing 146/536 atomic regions from SNP 43645 to 44246 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,344 DEBUG Processing 613/667 atomic regions from SNP 183786 to 184386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,370 DEBUG Processing 549/565 atomic regions from SNP 164580 to 165180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,475 DEBUG Processing 147/536 atomic regions from SNP 43946 to 44547 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,547 DEBUG Processing 550/565 atomic regions from SNP 164880 to 165480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,572 DEBUG Processing 614/667 atomic regions from SNP 184086 to 184686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,676 DEBUG Processing 148/536 atomic regions from SNP 44247 to 44848 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,724 DEBUG Processing 551/565 atomic regions from SNP 165180 to 165780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,797 DEBUG Processing 615/667 atomic regions from SNP 184386 to 184986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,873 DEBUG Processing 149/536 atomic regions from SNP 44548 to 45149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,903 DEBUG Processing 552/565 atomic regions from SNP 165480 to 166080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,023 DEBUG Processing 616/667 atomic regions from SNP 184686 to 185286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,064 DEBUG Processing 150/536 atomic regions from SNP 44849 to 45450 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,085 DEBUG Processing 553/565 atomic regions from SNP 165780 to 166380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,238 DEBUG Processing 617/667 atomic regions from SNP 184986 to 185586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,256 DEBUG Processing 151/536 atomic regions from SNP 45150 to 45751 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,291 DEBUG Processing 554/565 atomic regions from SNP 166080 to 166680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,445 DEBUG Processing 152/536 atomic regions from SNP 45451 to 46052 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,454 DEBUG Processing 618/667 atomic regions from SNP 185286 to 185886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,500 DEBUG Processing 555/565 atomic regions from SNP 166380 to 166980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,627 DEBUG Processing 153/536 atomic regions from SNP 45752 to 46353 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,680 DEBUG Processing 619/667 atomic regions from SNP 185586 to 186186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,689 DEBUG Processing 556/565 atomic regions from SNP 166680 to 167280 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,800 DEBUG Processing 154/536 atomic regions from SNP 46053 to 46654 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,871 DEBUG Processing 557/565 atomic regions from SNP 166980 to 167580 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,905 DEBUG Processing 620/667 atomic regions from SNP 185886 to 186486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,975 DEBUG Processing 155/536 atomic regions from SNP 46354 to 46955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,064 DEBUG Processing 558/565 atomic regions from SNP 167280 to 167880 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,128 DEBUG Processing 621/667 atomic regions from SNP 186186 to 186786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,148 DEBUG Processing 156/536 atomic regions from SNP 46655 to 47256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,263 DEBUG Processing 559/565 atomic regions from SNP 167580 to 168180 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,321 DEBUG Processing 157/536 atomic regions from SNP 46956 to 47557 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,343 DEBUG Processing 622/667 atomic regions from SNP 186486 to 187086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,469 DEBUG Processing 560/565 atomic regions from SNP 167880 to 168480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,493 DEBUG Processing 158/536 atomic regions from SNP 47257 to 47858 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,550 DEBUG Processing 623/667 atomic regions from SNP 186786 to 187386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,662 DEBUG Processing 561/565 atomic regions from SNP 168180 to 168780 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,664 DEBUG Processing 159/536 atomic regions from SNP 47558 to 48159 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,763 DEBUG Processing 624/667 atomic regions from SNP 187086 to 187686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,849 DEBUG Processing 160/536 atomic regions from SNP 47859 to 48460 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,867 DEBUG Processing 562/565 atomic regions from SNP 168480 to 169080 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,972 DEBUG Processing 625/667 atomic regions from SNP 187386 to 187986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,033 DEBUG Processing 161/536 atomic regions from SNP 48160 to 48761 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,061 DEBUG Processing 563/565 atomic regions from SNP 168780 to 169380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,192 DEBUG Processing 626/667 atomic regions from SNP 187686 to 188286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,225 DEBUG Processing 162/536 atomic regions from SNP 48461 to 49062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,250 DEBUG Processing 564/565 atomic regions from SNP 169080 to 169680 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,410 DEBUG Processing 163/536 atomic regions from SNP 48762 to 49363 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,422 DEBUG Processing 627/667 atomic regions from SNP 187986 to 188586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,465 DEBUG Processing 565/565 atomic regions from SNP 169380 to 169980 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,598 DEBUG Processing 164/536 atomic regions from SNP 49063 to 49664 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,606 DEBUG Unique SNPs positions in subchromosome 1: 169981 2025-01-31 09:55:29,654 DEBUG Processing 628/667 atomic regions from SNP 188286 to 188886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,778 DEBUG Processing 165/536 atomic regions from SNP 49364 to 49965 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,886 DEBUG Processing 629/667 atomic regions from SNP 188586 to 189186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,969 DEBUG Processing 166/536 atomic regions from SNP 49665 to 50266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,114 DEBUG Processing 630/667 atomic regions from SNP 188886 to 189486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,152 DEBUG Processing 167/536 atomic regions from SNP 49966 to 50567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,314 DEBUG Processing 631/667 atomic regions from SNP 189186 to 189786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,320 DEBUG Processing 168/536 atomic regions from SNP 50267 to 50868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,492 DEBUG Processing 169/536 atomic regions from SNP 50568 to 51169 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,510 DEBUG Processing 632/667 atomic regions from SNP 189486 to 190086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,662 DEBUG Processing 170/536 atomic regions from SNP 50869 to 51470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,705 DEBUG Processing 633/667 atomic regions from SNP 189786 to 190386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,834 DEBUG Processing 171/536 atomic regions from SNP 51170 to 51771 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,901 DEBUG Processing 634/667 atomic regions from SNP 190086 to 190686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,000 DEBUG Processing 172/536 atomic regions from SNP 51471 to 52072 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,094 DEBUG Processing 635/667 atomic regions from SNP 190386 to 190986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,167 DEBUG Processing 173/536 atomic regions from SNP 51772 to 52373 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,286 DEBUG Processing 636/667 atomic regions from SNP 190686 to 191286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,359 DEBUG Processing 174/536 atomic regions from SNP 52073 to 52674 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,479 DEBUG Processing 637/667 atomic regions from SNP 190986 to 191586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,559 DEBUG Processing 175/536 atomic regions from SNP 52374 to 52975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,672 DEBUG Processing 638/667 atomic regions from SNP 191286 to 191886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,765 DEBUG Processing 176/536 atomic regions from SNP 52675 to 53276 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,874 DEBUG Processing 639/667 atomic regions from SNP 191586 to 192186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,977 DEBUG Processing 177/536 atomic regions from SNP 52976 to 53577 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,076 DEBUG Processing 640/667 atomic regions from SNP 191886 to 192486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,151 DEBUG Processing 178/536 atomic regions from SNP 53277 to 53878 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,294 DEBUG Processing 641/667 atomic regions from SNP 192186 to 192786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,357 DEBUG Processing 179/536 atomic regions from SNP 53578 to 54179 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,488 DEBUG Processing 642/667 atomic regions from SNP 192486 to 193086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,553 DEBUG Processing 180/536 atomic regions from SNP 53879 to 54480 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,685 DEBUG Processing 643/667 atomic regions from SNP 192786 to 193386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,761 DEBUG Processing 181/536 atomic regions from SNP 54180 to 54781 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,881 DEBUG Processing 644/667 atomic regions from SNP 193086 to 193686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,972 DEBUG Processing 182/536 atomic regions from SNP 54481 to 55082 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,080 DEBUG Processing 645/667 atomic regions from SNP 193386 to 193986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,178 DEBUG Processing 183/536 atomic regions from SNP 54782 to 55383 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,286 DEBUG Processing 646/667 atomic regions from SNP 193686 to 194286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,369 DEBUG Processing 184/536 atomic regions from SNP 55083 to 55684 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,496 DEBUG Processing 647/667 atomic regions from SNP 193986 to 194586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,567 DEBUG Processing 185/536 atomic regions from SNP 55384 to 55985 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,637 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:55:33,650 DEBUG Subchromosome time: 143.9580858014524, subchromosome SNPs: 180424 2025-01-31 09:55:33,650 DEBUG Estimated BADs: [0.85, 1.70, 17.02, 1.70, 0.57, 0.85, 3.40, 0.85, 1.70, 3.40, 1.70, 0.43, 0.85, 3.40, 1.70, 0.57, 1.70, 8.51, 5.11, 3.40, 1.70, 5.11, 1.70, 6.81, 3.40, 11.91, 1.70] SNP counts: [3345, 7011, 81, 8019, 21068, 2825, 783, 6035, 8653, 4500, 11578, 7910, 14300, 2220, 18329, 2342, 9030, 1998, 10552, 6342, 5502, 1099, 16871, 2706, 6233, 261, 831] SNP IDs counts: [3345, 7011, 81, 8019, 21068, 2825, 783, 6035, 8653, 4500, 11578, 7910, 14300, 2220, 18329, 2342, 9030, 1998, 10552, 6342, 5502, 1099, 16871, 2706, 6233, 261, 831] Critical gap: 545448bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.08Mbp, 9.02Mbp, 9.10Mbp, 13.53Mbp, 25.73Mbp, 27.30Mbp, 27.73Mbp, 31.17Mbp, 36.12Mbp, 38.54Mbp, 45.17Mbp, 49.75Mbp, 57.83Mbp, 59.01Mbp, 69.36Mbp, 70.70Mbp, 75.68Mbp, 76.73Mbp, 82.38Mbp, 85.80Mbp, 88.71Mbp, 89.29Mbp, 98.50Mbp, 99.93Mbp, 103.24Mbp, 103.37Mbp, 104.04Mbp] 2025-01-31 09:55:33,651 DEBUG chr15 time: 143.95850351825356 s 2025-01-31 09:55:33,706 DEBUG Processing 648/667 atomic regions from SNP 194286 to 194886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,753 DEBUG chr15: Fitting background model for 27 segments 2025-01-31 09:55:33,768 DEBUG Processing 186/536 atomic regions from SNP 55685 to 56286 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,911 DEBUG Processing 649/667 atomic regions from SNP 194586 to 195186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,985 DEBUG Processing 187/536 atomic regions from SNP 55986 to 56587 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,127 DEBUG Processing 650/667 atomic regions from SNP 194886 to 195486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,191 DEBUG Processing 188/536 atomic regions from SNP 56287 to 56888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,338 DEBUG Processing 651/667 atomic regions from SNP 195186 to 195786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,368 DEBUG Processing 189/536 atomic regions from SNP 56588 to 57189 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,543 DEBUG Processing 190/536 atomic regions from SNP 56889 to 57490 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,550 DEBUG Processing 652/667 atomic regions from SNP 195486 to 196086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,719 DEBUG Processing 191/536 atomic regions from SNP 57190 to 57791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,769 DEBUG Processing 653/667 atomic regions from SNP 195786 to 196386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,896 DEBUG Processing 192/536 atomic regions from SNP 57491 to 58092 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,963 DEBUG Processing 654/667 atomic regions from SNP 196086 to 196686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,014 DEBUG Subchromosome time: 130.44905412010849, subchromosome SNPs: 169981 2025-01-31 09:55:35,014 DEBUG Estimated BADs: [3.05, 0.76, 3.05, 1.53, 4.58, 0.76, 3.05, 0.76, 1.53, 3.05, 0.76, 1.53, 0.51, 1.53, 0.38, 0.76, 1.53, 4.58, 3.05] SNP counts: [4028, 5171, 11208, 4394, 3596, 1164, 6656, 8422, 7113, 14232, 18155, 2523, 8012, 7006, 4182, 44176, 4441, 8703, 6799] SNP IDs counts: [4028, 5171, 11208, 4394, 3596, 1164, 6656, 8422, 7113, 14232, 18155, 2523, 8012, 7006, 4182, 44176, 4441, 8703, 6799] Critical gap: 529104bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 5.61Mbp, 8.41Mbp, 14.48Mbp, 17.07Mbp, 18.98Mbp, 19.75Mbp, 23.37Mbp, 28.03Mbp, 31.87Mbp, 39.52Mbp, 49.77Mbp, 51.15Mbp, 55.82Mbp, 59.86Mbp, 62.35Mbp, 87.43Mbp, 89.88Mbp, 94.47Mbp, 98.21Mbp] 2025-01-31 09:55:35,014 DEBUG chr16 time: 130.44948572665453 s 2025-01-31 09:55:35,070 DEBUG Processing 193/536 atomic regions from SNP 57792 to 58393 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,107 DEBUG chr16: Fitting background model for 19 segments 2025-01-31 09:55:35,162 DEBUG Processing 655/667 atomic regions from SNP 196386 to 196986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,244 DEBUG Processing 194/536 atomic regions from SNP 58093 to 58694 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,361 DEBUG Processing 656/667 atomic regions from SNP 196686 to 197286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,429 DEBUG Processing 195/536 atomic regions from SNP 58394 to 58995 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,570 DEBUG Processing 657/667 atomic regions from SNP 196986 to 197586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,605 DEBUG Processing 196/536 atomic regions from SNP 58695 to 59296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,764 DEBUG Processing 658/667 atomic regions from SNP 197286 to 197886 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,776 DEBUG Processing 197/536 atomic regions from SNP 58996 to 59597 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,953 DEBUG Processing 198/536 atomic regions from SNP 59297 to 59898 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,986 DEBUG Processing 659/667 atomic regions from SNP 197586 to 198186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,131 DEBUG Processing 199/536 atomic regions from SNP 59598 to 60199 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,197 DEBUG Processing 660/667 atomic regions from SNP 197886 to 198486 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,303 DEBUG Processing 200/536 atomic regions from SNP 59899 to 60500 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,393 DEBUG Processing 661/667 atomic regions from SNP 198186 to 198786 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,475 DEBUG Processing 201/536 atomic regions from SNP 60200 to 60801 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,586 DEBUG Processing 662/667 atomic regions from SNP 198486 to 199086 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,648 DEBUG Processing 202/536 atomic regions from SNP 60501 to 61102 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,785 DEBUG Processing 663/667 atomic regions from SNP 198786 to 199386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,826 DEBUG Processing 203/536 atomic regions from SNP 60802 to 61403 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,982 DEBUG Processing 664/667 atomic regions from SNP 199086 to 199686 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,003 DEBUG Processing 204/536 atomic regions from SNP 61103 to 61704 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,179 DEBUG Processing 205/536 atomic regions from SNP 61404 to 62005 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,179 DEBUG Processing 665/667 atomic regions from SNP 199386 to 199986 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,353 DEBUG Processing 206/536 atomic regions from SNP 61705 to 62306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,376 DEBUG Processing 666/667 atomic regions from SNP 199686 to 200286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,528 DEBUG Processing 207/536 atomic regions from SNP 62006 to 62607 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,571 DEBUG Processing 667/667 atomic regions from SNP 199986 to 200586 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,684 DEBUG Unique SNPs positions in subchromosome 1: 200587 2025-01-31 09:55:37,699 DEBUG Processing 208/536 atomic regions from SNP 62307 to 62908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,870 DEBUG Processing 209/536 atomic regions from SNP 62608 to 63209 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,042 DEBUG Processing 210/536 atomic regions from SNP 62909 to 63510 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,210 DEBUG Processing 211/536 atomic regions from SNP 63210 to 63811 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,378 DEBUG Processing 212/536 atomic regions from SNP 63511 to 64112 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,547 DEBUG Processing 213/536 atomic regions from SNP 63812 to 64413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,716 DEBUG Processing 214/536 atomic regions from SNP 64113 to 64714 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,885 DEBUG Processing 215/536 atomic regions from SNP 64414 to 65015 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,053 DEBUG Processing 216/536 atomic regions from SNP 64715 to 65316 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,221 DEBUG Processing 217/536 atomic regions from SNP 65016 to 65617 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,390 DEBUG Processing 218/536 atomic regions from SNP 65317 to 65918 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,558 DEBUG Processing 219/536 atomic regions from SNP 65618 to 66219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,729 DEBUG Processing 220/536 atomic regions from SNP 65919 to 66520 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,897 DEBUG Processing 221/536 atomic regions from SNP 66220 to 66821 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,067 DEBUG Processing 222/536 atomic regions from SNP 66521 to 67122 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,237 DEBUG Processing 223/536 atomic regions from SNP 66822 to 67423 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,408 DEBUG Processing 224/536 atomic regions from SNP 67123 to 67724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,599 DEBUG Processing 225/536 atomic regions from SNP 67424 to 68024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,772 DEBUG Processing 226/536 atomic regions from SNP 67724 to 68324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,961 DEBUG Processing 227/536 atomic regions from SNP 68024 to 68624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,156 DEBUG Processing 228/536 atomic regions from SNP 68324 to 68924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,348 DEBUG Processing 229/536 atomic regions from SNP 68624 to 69224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,525 DEBUG Processing 230/536 atomic regions from SNP 68924 to 69524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,686 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:55:41,688 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:55:41,697 DEBUG Processing 231/536 atomic regions from SNP 69224 to 69824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,873 DEBUG Processing 232/536 atomic regions from SNP 69524 to 70124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,045 DEBUG Processing 233/536 atomic regions from SNP 69824 to 70424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,215 DEBUG Processing 234/536 atomic regions from SNP 70124 to 70724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,387 DEBUG Processing 235/536 atomic regions from SNP 70424 to 71024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,559 DEBUG Processing 236/536 atomic regions from SNP 70724 to 71324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,680 DEBUG Subchromosome time: 163.03023551777005, subchromosome SNPs: 200587 2025-01-31 09:55:42,680 DEBUG Estimated BADs: [2.81, 1.41, 4.22, 1.41, 0.70, 1.41, 0.70, 2.81, 1.41, 5.63, 1.41, 2.81, 1.41, 0.47, 1.41, 2.81, 14.07, 1.41, 4.22, 1.41] SNP counts: [4314, 26404, 700, 21957, 24892, 14712, 15934, 5078, 8009, 980, 3857, 15730, 8611, 7801, 3941, 10543, 102, 10006, 5117, 11899] SNP IDs counts: [4314, 26404, 700, 21957, 24892, 14712, 15934, 5078, 8009, 980, 3857, 15730, 8611, 7801, 3941, 10543, 102, 10006, 5117, 11899] Critical gap: 600118bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.42Mbp, 24.56Mbp, 24.93Mbp, 36.94Mbp, 51.49Mbp, 59.87Mbp, 69.15Mbp, 71.85Mbp, 76.18Mbp, 76.70Mbp, 78.86Mbp, 87.27Mbp, 92.48Mbp, 97.00Mbp, 99.21Mbp, 105.00Mbp, 105.05Mbp, 110.37Mbp, 113.05Mbp, 120.13Mbp] 2025-01-31 09:55:42,680 DEBUG chr12 time: 163.03071974776685 s 2025-01-31 09:55:42,739 DEBUG Processing 237/536 atomic regions from SNP 71024 to 71624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,802 DEBUG chr12: Fitting background model for 20 segments 2025-01-31 09:55:42,909 DEBUG Processing 238/536 atomic regions from SNP 71324 to 71924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,077 DEBUG Processing 239/536 atomic regions from SNP 71624 to 72224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,250 DEBUG Processing 240/536 atomic regions from SNP 71924 to 72524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,306 DEBUG chrY total SNP count: 151 2025-01-31 09:55:43,306 DEBUG chrY length: 91744698 2025-01-31 09:55:43,306 DEBUG ----------------------------------------- 2025-01-31 09:55:43,307 INFO Processing SNPs in chrY 2025-01-31 09:55:43,308 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 11), (11, 16), (16, 27), (27, 38), (38, 49), (49, 57), (57, 64), (64, 80), (80, 83), (83, 89), (89, 93), (93, 99), (99, 107), (107, 109), (109, 151)] 2025-01-31 09:55:43,308 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [11, 5, 11, 11, 11, 8, 7, 16, 3, 6, 4, 6, 8, 2, 42] SNP IDs counts: [11, 5, 11, 11, 11, 8, 7, 16, 3, 6, 4, 6, 8, 2, 42] Critical gap: 22641bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.84Mbp], 0.85Mbp[0.14Mbp], 0.99Mbp[0.76Mbp], 1.76Mbp[0.21Mbp], 1.97Mbp[0.31Mbp], 2.28Mbp[0.08Mbp], 2.37Mbp[0.20Mbp], 2.58Mbp[1.38Mbp], 3.98Mbp[0.09Mbp], 4.07Mbp[0.08Mbp], 4.15Mbp[4.93Mbp], 9.09Mbp[0.75Mbp], 9.85Mbp[0.86Mbp], 10.71Mbp[33.21Mbp], 43.92Mbp[46.79Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:55:43,308 DEBUG chrY time: 0.0016644783318042755 s 2025-01-31 09:55:43,445 DEBUG Processing 241/536 atomic regions from SNP 72224 to 72824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,649 DEBUG Processing 242/536 atomic regions from SNP 72524 to 73124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,844 DEBUG Processing 243/536 atomic regions from SNP 72824 to 73424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,033 DEBUG Processing 244/536 atomic regions from SNP 73124 to 73724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,263 DEBUG Processing 245/536 atomic regions from SNP 73424 to 74024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,462 DEBUG Processing 246/536 atomic regions from SNP 73724 to 74324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,650 DEBUG Processing 247/536 atomic regions from SNP 74024 to 74624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,847 DEBUG Processing 248/536 atomic regions from SNP 74324 to 74924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,057 DEBUG Processing 249/536 atomic regions from SNP 74624 to 75224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,252 DEBUG Processing 250/536 atomic regions from SNP 74924 to 75524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,418 DEBUG Processing 251/536 atomic regions from SNP 75224 to 75824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,587 DEBUG Processing 252/536 atomic regions from SNP 75524 to 76124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,765 DEBUG Processing 253/536 atomic regions from SNP 75824 to 76424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,868 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:55:45,969 DEBUG Processing 254/536 atomic regions from SNP 76124 to 76724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,173 DEBUG Processing 255/536 atomic regions from SNP 76424 to 77024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,372 DEBUG Processing 256/536 atomic regions from SNP 76724 to 77324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,576 DEBUG Processing 257/536 atomic regions from SNP 77024 to 77624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,757 DEBUG Processing 258/536 atomic regions from SNP 77324 to 77924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,949 DEBUG Processing 259/536 atomic regions from SNP 77624 to 78224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,142 DEBUG Processing 260/536 atomic regions from SNP 77924 to 78524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,314 DEBUG Processing 261/536 atomic regions from SNP 78224 to 78824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,488 DEBUG Processing 262/536 atomic regions from SNP 78524 to 79124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,661 DEBUG Processing 263/536 atomic regions from SNP 78824 to 79424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,847 DEBUG Processing 264/536 atomic regions from SNP 79124 to 79724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,028 DEBUG Processing 265/536 atomic regions from SNP 79424 to 80024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,212 DEBUG Processing 266/536 atomic regions from SNP 79724 to 80324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,392 DEBUG Processing 267/536 atomic regions from SNP 80024 to 80624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,564 DEBUG Processing 268/536 atomic regions from SNP 80324 to 80924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,734 DEBUG Processing 269/536 atomic regions from SNP 80624 to 81224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,906 DEBUG Processing 270/536 atomic regions from SNP 80924 to 81524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,087 DEBUG Processing 271/536 atomic regions from SNP 81224 to 81824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,270 DEBUG Processing 272/536 atomic regions from SNP 81524 to 82124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,447 DEBUG Processing 273/536 atomic regions from SNP 81824 to 82424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,626 DEBUG Processing 274/536 atomic regions from SNP 82124 to 82724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,795 DEBUG Processing 275/536 atomic regions from SNP 82424 to 83024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,966 DEBUG Processing 276/536 atomic regions from SNP 82724 to 83324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,137 DEBUG Processing 277/536 atomic regions from SNP 83024 to 83624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,309 DEBUG Processing 278/536 atomic regions from SNP 83324 to 83924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,480 DEBUG Processing 279/536 atomic regions from SNP 83624 to 84224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,652 DEBUG Processing 280/536 atomic regions from SNP 83924 to 84524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,823 DEBUG Processing 281/536 atomic regions from SNP 84224 to 84824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,991 DEBUG Processing 282/536 atomic regions from SNP 84524 to 85124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,157 DEBUG Processing 283/536 atomic regions from SNP 84824 to 85424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,325 DEBUG Processing 284/536 atomic regions from SNP 85124 to 85724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,496 DEBUG Processing 285/536 atomic regions from SNP 85424 to 86024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,669 DEBUG Processing 286/536 atomic regions from SNP 85724 to 86324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,841 DEBUG Processing 287/536 atomic regions from SNP 86024 to 86624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,008 DEBUG Processing 288/536 atomic regions from SNP 86324 to 86924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,172 DEBUG Processing 289/536 atomic regions from SNP 86624 to 87224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,336 DEBUG Processing 290/536 atomic regions from SNP 86924 to 87524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,509 DEBUG Processing 291/536 atomic regions from SNP 87224 to 87824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,674 DEBUG Processing 292/536 atomic regions from SNP 87524 to 88124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,846 DEBUG Processing 293/536 atomic regions from SNP 87824 to 88424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,022 DEBUG Processing 294/536 atomic regions from SNP 88124 to 88724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,191 DEBUG Processing 295/536 atomic regions from SNP 88424 to 89024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,365 DEBUG Processing 296/536 atomic regions from SNP 88724 to 89324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,535 DEBUG Processing 297/536 atomic regions from SNP 89024 to 89624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,706 DEBUG Processing 298/536 atomic regions from SNP 89324 to 89924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,885 DEBUG Processing 299/536 atomic regions from SNP 89624 to 90224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,056 DEBUG Processing 300/536 atomic regions from SNP 89924 to 90524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,235 DEBUG Processing 301/536 atomic regions from SNP 90224 to 90824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,408 DEBUG Processing 302/536 atomic regions from SNP 90524 to 91124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,586 DEBUG Processing 303/536 atomic regions from SNP 90824 to 91424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,791 DEBUG Processing 304/536 atomic regions from SNP 91124 to 91724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,003 DEBUG Processing 305/536 atomic regions from SNP 91424 to 92024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,121 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:55:55,122 DEBUG chr18: Signal quantile: 0.994. signal threshold: 13. Best RMSEA: 0.019 2025-01-31 09:55:55,219 DEBUG Processing 306/536 atomic regions from SNP 91724 to 92324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,410 DEBUG Processing 307/536 atomic regions from SNP 92024 to 92624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,617 DEBUG Processing 308/536 atomic regions from SNP 92324 to 92924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,824 DEBUG Processing 309/536 atomic regions from SNP 92624 to 93224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,026 DEBUG Processing 310/536 atomic regions from SNP 92924 to 93524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,237 DEBUG Processing 311/536 atomic regions from SNP 93224 to 93824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,436 DEBUG Processing 312/536 atomic regions from SNP 93524 to 94124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,622 DEBUG Processing 313/536 atomic regions from SNP 93824 to 94424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,627 DEBUG chr18 total SNP count: 157196 2025-01-31 09:55:56,627 DEBUG chr18 length: 90702639 2025-01-31 09:55:56,627 DEBUG ----------------------------------------- 2025-01-31 09:55:56,627 INFO Processing SNPs in chr18 2025-01-31 09:55:56,778 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 157196)] 2025-01-31 09:55:56,792 DEBUG Processing 314/536 atomic regions from SNP 94124 to 94724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,883 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:56,964 DEBUG Processing 315/536 atomic regions from SNP 94424 to 95024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,132 DEBUG Processing 316/536 atomic regions from SNP 94724 to 95324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,300 DEBUG Processing 317/536 atomic regions from SNP 95024 to 95624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,467 DEBUG Processing 318/536 atomic regions from SNP 95324 to 95924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,635 DEBUG Processing 319/536 atomic regions from SNP 95624 to 96224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,806 DEBUG Processing 320/536 atomic regions from SNP 95924 to 96524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,977 DEBUG Processing 321/536 atomic regions from SNP 96224 to 96824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,145 DEBUG Processing 322/536 atomic regions from SNP 96524 to 97124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,315 DEBUG Processing 323/536 atomic regions from SNP 96824 to 97424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,487 DEBUG Processing 324/536 atomic regions from SNP 97124 to 97724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,655 DEBUG Processing 325/536 atomic regions from SNP 97424 to 98024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,822 DEBUG Processing 326/536 atomic regions from SNP 97724 to 98324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,995 DEBUG Processing 327/536 atomic regions from SNP 98024 to 98624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,165 DEBUG Processing 328/536 atomic regions from SNP 98324 to 98924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,335 DEBUG Processing 329/536 atomic regions from SNP 98624 to 99224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,508 DEBUG Processing 330/536 atomic regions from SNP 98924 to 99524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,680 DEBUG Processing 331/536 atomic regions from SNP 99224 to 99824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,849 DEBUG Processing 332/536 atomic regions from SNP 99524 to 100124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,019 DEBUG Processing 333/536 atomic regions from SNP 99824 to 100424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,187 DEBUG Processing 334/536 atomic regions from SNP 100124 to 100724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,353 DEBUG Processing 335/536 atomic regions from SNP 100424 to 101024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,520 DEBUG Processing 336/536 atomic regions from SNP 100724 to 101324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,691 DEBUG Processing 337/536 atomic regions from SNP 101024 to 101624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,859 DEBUG Processing 338/536 atomic regions from SNP 101324 to 101924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,028 DEBUG Processing 339/536 atomic regions from SNP 101624 to 102224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,200 DEBUG Processing 340/536 atomic regions from SNP 101924 to 102524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,370 DEBUG Processing 341/536 atomic regions from SNP 102224 to 102824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,540 DEBUG Processing 342/536 atomic regions from SNP 102524 to 103124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,712 DEBUG Processing 343/536 atomic regions from SNP 102824 to 103424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,881 DEBUG Processing 344/536 atomic regions from SNP 103124 to 103724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,048 DEBUG Processing 345/536 atomic regions from SNP 103424 to 104024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,214 DEBUG Processing 346/536 atomic regions from SNP 103724 to 104324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,384 DEBUG Processing 347/536 atomic regions from SNP 104024 to 104624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,555 DEBUG Processing 348/536 atomic regions from SNP 104324 to 104924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,729 DEBUG Processing 349/536 atomic regions from SNP 104624 to 105224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,895 DEBUG Processing 350/536 atomic regions from SNP 104924 to 105524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,075 DEBUG Processing 351/536 atomic regions from SNP 105224 to 105824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,248 DEBUG Processing 352/536 atomic regions from SNP 105524 to 106124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,422 DEBUG Processing 353/536 atomic regions from SNP 105824 to 106424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,592 DEBUG Processing 354/536 atomic regions from SNP 106124 to 106724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,775 DEBUG Processing 355/536 atomic regions from SNP 106424 to 107024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,941 DEBUG Processing 356/536 atomic regions from SNP 106724 to 107324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,106 DEBUG Processing 357/536 atomic regions from SNP 107024 to 107624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,270 DEBUG Processing 358/536 atomic regions from SNP 107324 to 107924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,440 DEBUG Processing 359/536 atomic regions from SNP 107624 to 108224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,608 DEBUG Processing 360/536 atomic regions from SNP 107924 to 108524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,622 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:56:04,780 DEBUG Processing 361/536 atomic regions from SNP 108224 to 108824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,977 DEBUG Processing 362/536 atomic regions from SNP 108524 to 109124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,184 DEBUG Processing 363/536 atomic regions from SNP 108824 to 109424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,377 DEBUG Processing 364/536 atomic regions from SNP 109124 to 109724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,553 DEBUG Processing 365/536 atomic regions from SNP 109424 to 110024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,720 DEBUG Processing 366/536 atomic regions from SNP 109724 to 110324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,887 DEBUG Processing 367/536 atomic regions from SNP 110024 to 110624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,053 DEBUG Processing 368/536 atomic regions from SNP 110324 to 110924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,226 DEBUG Processing 369/536 atomic regions from SNP 110624 to 111224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,398 DEBUG Processing 370/536 atomic regions from SNP 110924 to 111524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,568 DEBUG Processing 371/536 atomic regions from SNP 111224 to 111824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,736 DEBUG Processing 372/536 atomic regions from SNP 111524 to 112124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,907 DEBUG Processing 373/536 atomic regions from SNP 111824 to 112424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,076 DEBUG Processing 374/536 atomic regions from SNP 112124 to 112724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,241 DEBUG Processing 375/536 atomic regions from SNP 112424 to 113024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,407 DEBUG Processing 376/536 atomic regions from SNP 112724 to 113324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,578 DEBUG Processing 377/536 atomic regions from SNP 113024 to 113624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,743 DEBUG Processing 378/536 atomic regions from SNP 113324 to 113924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,912 DEBUG Processing 379/536 atomic regions from SNP 113624 to 114224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,099 DEBUG Processing 380/536 atomic regions from SNP 113924 to 114524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,277 DEBUG Processing 381/536 atomic regions from SNP 114224 to 114824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,448 DEBUG Processing 382/536 atomic regions from SNP 114524 to 115124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,614 DEBUG Processing 383/536 atomic regions from SNP 114824 to 115424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,788 DEBUG Processing 384/536 atomic regions from SNP 115124 to 115724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,961 DEBUG Processing 385/536 atomic regions from SNP 115424 to 116024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,133 DEBUG Processing 386/536 atomic regions from SNP 115724 to 116324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,302 DEBUG Processing 387/536 atomic regions from SNP 116024 to 116624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,470 DEBUG Processing 388/536 atomic regions from SNP 116324 to 116924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,636 DEBUG Processing 389/536 atomic regions from SNP 116624 to 117224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,802 DEBUG Processing 390/536 atomic regions from SNP 116924 to 117524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,968 DEBUG Processing 391/536 atomic regions from SNP 117224 to 117824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,130 DEBUG Processing 392/536 atomic regions from SNP 117524 to 118124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,308 DEBUG Processing 393/536 atomic regions from SNP 117824 to 118424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,498 DEBUG Processing 394/536 atomic regions from SNP 118124 to 118724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,694 DEBUG Processing 395/536 atomic regions from SNP 118424 to 119024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,872 DEBUG Processing 396/536 atomic regions from SNP 118724 to 119324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,051 DEBUG Processing 397/536 atomic regions from SNP 119024 to 119624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,234 DEBUG Processing 398/536 atomic regions from SNP 119324 to 119924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,401 DEBUG Processing 399/536 atomic regions from SNP 119624 to 120224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,567 DEBUG Processing 400/536 atomic regions from SNP 119924 to 120524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,732 DEBUG Processing 401/536 atomic regions from SNP 120224 to 120824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,899 DEBUG Processing 402/536 atomic regions from SNP 120524 to 121124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,070 DEBUG Processing 403/536 atomic regions from SNP 120824 to 121424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,239 DEBUG Processing 404/536 atomic regions from SNP 121124 to 121724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,408 DEBUG Processing 405/536 atomic regions from SNP 121424 to 122024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,577 DEBUG Processing 406/536 atomic regions from SNP 121724 to 122324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,747 DEBUG Processing 407/536 atomic regions from SNP 122024 to 122624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,925 DEBUG Processing 408/536 atomic regions from SNP 122324 to 122924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,937 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:56:12,938 DEBUG chr19: Signal quantile: 0.988. signal threshold: 14. Best RMSEA: 0.013 2025-01-31 09:56:13,091 DEBUG Processing 409/536 atomic regions from SNP 122624 to 123224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,259 DEBUG Processing 410/536 atomic regions from SNP 122924 to 123524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,425 DEBUG Processing 411/536 atomic regions from SNP 123224 to 123824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,593 DEBUG Processing 412/536 atomic regions from SNP 123524 to 124124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,763 DEBUG Processing 413/536 atomic regions from SNP 123824 to 124424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,933 DEBUG Processing 414/536 atomic regions from SNP 124124 to 124724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,934 DEBUG chr19 total SNP count: 105140 2025-01-31 09:56:13,934 DEBUG chr19 length: 61431566 2025-01-31 09:56:13,934 DEBUG ----------------------------------------- 2025-01-31 09:56:13,934 INFO Processing SNPs in chr19 2025-01-31 09:56:14,035 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 105140)] 2025-01-31 09:56:14,100 DEBUG Processing 415/536 atomic regions from SNP 124424 to 125024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,104 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:14,265 DEBUG Processing 416/536 atomic regions from SNP 124724 to 125324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,429 DEBUG Processing 417/536 atomic regions from SNP 125024 to 125624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,596 DEBUG Processing 418/536 atomic regions from SNP 125324 to 125924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,762 DEBUG Processing 419/536 atomic regions from SNP 125624 to 126224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,930 DEBUG Processing 420/536 atomic regions from SNP 125924 to 126524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,097 DEBUG Processing 421/536 atomic regions from SNP 126224 to 126824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,266 DEBUG Processing 422/536 atomic regions from SNP 126524 to 127124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,435 DEBUG Processing 423/536 atomic regions from SNP 126824 to 127424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,604 DEBUG Processing 424/536 atomic regions from SNP 127124 to 127724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,770 DEBUG Processing 425/536 atomic regions from SNP 127424 to 128024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,939 DEBUG Processing 426/536 atomic regions from SNP 127724 to 128324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,107 DEBUG Processing 427/536 atomic regions from SNP 128024 to 128624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,273 DEBUG Processing 428/536 atomic regions from SNP 128324 to 128924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,441 DEBUG Processing 429/536 atomic regions from SNP 128624 to 129224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,611 DEBUG Processing 430/536 atomic regions from SNP 128924 to 129524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,778 DEBUG Processing 431/536 atomic regions from SNP 129224 to 129824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,947 DEBUG Processing 432/536 atomic regions from SNP 129524 to 130124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,112 DEBUG Segmenting atomic regions: 2025-01-31 09:56:17,124 DEBUG Processing 433/536 atomic regions from SNP 129824 to 130424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,178 DEBUG Processing 1/522 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:17,290 DEBUG Processing 434/536 atomic regions from SNP 130124 to 130724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,358 DEBUG Processing 2/522 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:17,459 DEBUG Processing 435/536 atomic regions from SNP 130424 to 131024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,553 DEBUG Processing 3/522 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:17,627 DEBUG Processing 436/536 atomic regions from SNP 130724 to 131324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,716 DEBUG Processing 4/522 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:17,798 DEBUG Processing 437/536 atomic regions from SNP 131024 to 131624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,881 DEBUG Processing 5/522 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:17,972 DEBUG Processing 438/536 atomic regions from SNP 131324 to 131924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,050 DEBUG Processing 6/522 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:18,141 DEBUG Processing 439/536 atomic regions from SNP 131624 to 132224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,217 DEBUG Processing 7/522 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:18,308 DEBUG Processing 440/536 atomic regions from SNP 131924 to 132524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,390 DEBUG Processing 8/522 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:18,482 DEBUG Processing 441/536 atomic regions from SNP 132224 to 132824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,558 DEBUG Processing 9/522 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:18,656 DEBUG Processing 442/536 atomic regions from SNP 132524 to 133124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,736 DEBUG Processing 10/522 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:18,826 DEBUG Processing 443/536 atomic regions from SNP 132824 to 133424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,910 DEBUG Processing 11/522 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:18,995 DEBUG Processing 444/536 atomic regions from SNP 133124 to 133724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,096 DEBUG Processing 12/522 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:19,165 DEBUG Processing 445/536 atomic regions from SNP 133424 to 134024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,269 DEBUG Processing 13/522 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:19,335 DEBUG Processing 446/536 atomic regions from SNP 133724 to 134324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,463 DEBUG Processing 14/522 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:19,507 DEBUG Processing 447/536 atomic regions from SNP 134024 to 134624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,643 DEBUG Processing 15/522 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:19,698 DEBUG Processing 448/536 atomic regions from SNP 134324 to 134924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,815 DEBUG Processing 16/522 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:19,889 DEBUG Processing 449/536 atomic regions from SNP 134624 to 135224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,987 DEBUG Processing 17/522 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:20,071 DEBUG Processing 450/536 atomic regions from SNP 134924 to 135524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,159 DEBUG Processing 18/522 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:20,271 DEBUG Processing 451/536 atomic regions from SNP 135224 to 135824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,344 DEBUG Processing 19/522 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:20,458 DEBUG Processing 452/536 atomic regions from SNP 135524 to 136124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,515 DEBUG Processing 20/522 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:20,630 DEBUG Processing 453/536 atomic regions from SNP 135824 to 136424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,684 DEBUG Processing 21/522 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:20,800 DEBUG Processing 454/536 atomic regions from SNP 136124 to 136724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,857 DEBUG Processing 22/522 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:20,970 DEBUG Processing 455/536 atomic regions from SNP 136424 to 137024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,028 DEBUG Processing 23/522 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:21,142 DEBUG Processing 456/536 atomic regions from SNP 136724 to 137324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,195 DEBUG Processing 24/522 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:21,311 DEBUG Processing 457/536 atomic regions from SNP 137024 to 137624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,363 DEBUG Processing 25/522 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:21,481 DEBUG Processing 458/536 atomic regions from SNP 137324 to 137924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,533 DEBUG Processing 26/522 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:21,649 DEBUG Processing 459/536 atomic regions from SNP 137624 to 138224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,701 DEBUG Processing 27/522 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:21,818 DEBUG Processing 460/536 atomic regions from SNP 137924 to 138524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,868 DEBUG Processing 28/522 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:21,990 DEBUG Processing 461/536 atomic regions from SNP 138224 to 138824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,035 DEBUG Processing 29/522 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:22,162 DEBUG Processing 462/536 atomic regions from SNP 138524 to 139124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,203 DEBUG Processing 30/522 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:22,337 DEBUG Processing 463/536 atomic regions from SNP 138824 to 139424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,383 DEBUG Processing 31/522 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:22,506 DEBUG Processing 464/536 atomic regions from SNP 139124 to 139724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,553 DEBUG Processing 32/522 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:22,676 DEBUG Processing 465/536 atomic regions from SNP 139424 to 140024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,721 DEBUG Processing 33/522 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:22,845 DEBUG Processing 466/536 atomic regions from SNP 139724 to 140324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,889 DEBUG Processing 34/522 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,013 DEBUG Processing 467/536 atomic regions from SNP 140024 to 140624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,057 DEBUG Processing 35/522 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,182 DEBUG Processing 468/536 atomic regions from SNP 140324 to 140924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,227 DEBUG Processing 36/522 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,355 DEBUG Processing 469/536 atomic regions from SNP 140624 to 141224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,395 DEBUG Processing 37/522 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,537 DEBUG Processing 470/536 atomic regions from SNP 140924 to 141524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,561 DEBUG Processing 38/522 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,720 DEBUG Processing 471/536 atomic regions from SNP 141224 to 141824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,729 DEBUG Processing 39/522 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,898 DEBUG Processing 40/522 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,902 DEBUG Processing 472/536 atomic regions from SNP 141524 to 142124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,069 DEBUG Processing 41/522 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,093 DEBUG Processing 473/536 atomic regions from SNP 141824 to 142424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,243 DEBUG Processing 42/522 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,287 DEBUG Processing 474/536 atomic regions from SNP 142124 to 142724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,412 DEBUG Processing 43/522 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,455 DEBUG Processing 475/536 atomic regions from SNP 142424 to 143024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,587 DEBUG Processing 44/522 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,627 DEBUG Processing 476/536 atomic regions from SNP 142724 to 143324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,776 DEBUG Processing 45/522 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,804 DEBUG Processing 477/536 atomic regions from SNP 143024 to 143624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,947 DEBUG Processing 46/522 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,995 DEBUG Processing 478/536 atomic regions from SNP 143324 to 143924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,113 DEBUG Processing 47/522 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,178 DEBUG Processing 479/536 atomic regions from SNP 143624 to 144224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,279 DEBUG Processing 48/522 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,349 DEBUG Processing 480/536 atomic regions from SNP 143924 to 144524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,444 DEBUG Processing 49/522 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,520 DEBUG Processing 481/536 atomic regions from SNP 144224 to 144824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,614 DEBUG Processing 50/522 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,691 DEBUG Processing 482/536 atomic regions from SNP 144524 to 145124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,781 DEBUG Processing 51/522 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,860 DEBUG Processing 483/536 atomic regions from SNP 144824 to 145424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,950 DEBUG Processing 52/522 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,028 DEBUG Processing 484/536 atomic regions from SNP 145124 to 145724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,116 DEBUG Processing 53/522 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,198 DEBUG Processing 485/536 atomic regions from SNP 145424 to 146024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,290 DEBUG Processing 54/522 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,393 DEBUG Processing 486/536 atomic regions from SNP 145724 to 146324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,455 DEBUG Processing 55/522 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,592 DEBUG Processing 487/536 atomic regions from SNP 146024 to 146624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,622 DEBUG Processing 56/522 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,777 DEBUG Processing 488/536 atomic regions from SNP 146324 to 146924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,790 DEBUG Processing 57/522 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,950 DEBUG Processing 489/536 atomic regions from SNP 146624 to 147224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,965 DEBUG Processing 58/522 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,123 DEBUG Processing 490/536 atomic regions from SNP 146924 to 147524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,134 DEBUG Processing 59/522 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,302 DEBUG Processing 491/536 atomic regions from SNP 147224 to 147824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,303 DEBUG Processing 60/522 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,475 DEBUG Processing 61/522 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,487 DEBUG Processing 492/536 atomic regions from SNP 147524 to 148124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,591 DEBUG Segmenting atomic regions: 2025-01-31 09:56:27,639 DEBUG Processing 1/349 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:27,651 DEBUG Processing 62/522 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,679 DEBUG Processing 493/536 atomic regions from SNP 147824 to 148424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,819 DEBUG Processing 2/349 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:27,822 DEBUG Processing 63/522 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,866 DEBUG Processing 494/536 atomic regions from SNP 148124 to 148724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,983 DEBUG Processing 3/349 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:27,992 DEBUG Processing 64/522 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,039 DEBUG Processing 495/536 atomic regions from SNP 148424 to 149024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,155 DEBUG Processing 4/349 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,160 DEBUG Processing 65/522 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,209 DEBUG Processing 496/536 atomic regions from SNP 148724 to 149324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,327 DEBUG Processing 5/349 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,332 DEBUG Processing 66/522 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,387 DEBUG Processing 497/536 atomic regions from SNP 149024 to 149624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,506 DEBUG Processing 67/522 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,510 DEBUG Processing 6/349 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,561 DEBUG Processing 498/536 atomic regions from SNP 149324 to 149924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,677 DEBUG Processing 68/522 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,699 DEBUG Processing 7/349 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,733 DEBUG Processing 499/536 atomic regions from SNP 149624 to 150224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,850 DEBUG Processing 69/522 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,884 DEBUG Processing 8/349 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,908 DEBUG Processing 500/536 atomic regions from SNP 149924 to 150524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,020 DEBUG Processing 70/522 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,056 DEBUG Processing 9/349 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,089 DEBUG Processing 501/536 atomic regions from SNP 150224 to 150824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,190 DEBUG Processing 71/522 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,233 DEBUG Processing 10/349 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,268 DEBUG Processing 502/536 atomic regions from SNP 150524 to 151124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,357 DEBUG Processing 72/522 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,403 DEBUG Processing 11/349 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,438 DEBUG Processing 503/536 atomic regions from SNP 150824 to 151424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,526 DEBUG Processing 73/522 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,581 DEBUG Processing 12/349 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,609 DEBUG Processing 504/536 atomic regions from SNP 151124 to 151724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,693 DEBUG Processing 74/522 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,766 DEBUG Processing 13/349 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,782 DEBUG Processing 505/536 atomic regions from SNP 151424 to 152024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,860 DEBUG Processing 75/522 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,943 DEBUG Processing 14/349 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,956 DEBUG Processing 506/536 atomic regions from SNP 151724 to 152324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,029 DEBUG Processing 76/522 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,125 DEBUG Processing 15/349 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,128 DEBUG Processing 507/536 atomic regions from SNP 152024 to 152624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,198 DEBUG Processing 77/522 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,305 DEBUG Processing 508/536 atomic regions from SNP 152324 to 152924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,309 DEBUG Processing 16/349 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,369 DEBUG Processing 78/522 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,476 DEBUG Processing 509/536 atomic regions from SNP 152624 to 153224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,495 DEBUG Processing 17/349 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,542 DEBUG Processing 79/522 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,646 DEBUG Processing 510/536 atomic regions from SNP 152924 to 153524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,678 DEBUG Processing 18/349 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,712 DEBUG Processing 80/522 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,816 DEBUG Processing 511/536 atomic regions from SNP 153224 to 153824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,860 DEBUG Processing 19/349 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,882 DEBUG Processing 81/522 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,993 DEBUG Processing 512/536 atomic regions from SNP 153524 to 154124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,051 DEBUG Processing 20/349 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,056 DEBUG Processing 82/522 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,165 DEBUG Processing 513/536 atomic regions from SNP 153824 to 154424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,224 DEBUG Processing 83/522 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,234 DEBUG Processing 21/349 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,337 DEBUG Processing 514/536 atomic regions from SNP 154124 to 154724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,392 DEBUG Processing 84/522 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,411 DEBUG Processing 22/349 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,510 DEBUG Processing 515/536 atomic regions from SNP 154424 to 155024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,562 DEBUG Processing 85/522 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,571 DEBUG Processing 23/349 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,685 DEBUG Processing 516/536 atomic regions from SNP 154724 to 155324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,732 DEBUG Processing 86/522 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,754 DEBUG Processing 24/349 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,857 DEBUG Processing 517/536 atomic regions from SNP 155024 to 155624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,902 DEBUG Processing 87/522 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,939 DEBUG Processing 25/349 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,030 DEBUG Processing 518/536 atomic regions from SNP 155324 to 155924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,074 DEBUG Processing 88/522 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,124 DEBUG Processing 26/349 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,202 DEBUG Processing 519/536 atomic regions from SNP 155624 to 156224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,243 DEBUG Processing 89/522 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,294 DEBUG Processing 27/349 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,375 DEBUG Processing 520/536 atomic regions from SNP 155924 to 156524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,412 DEBUG Processing 90/522 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,451 DEBUG Processing 28/349 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,551 DEBUG Processing 521/536 atomic regions from SNP 156224 to 156824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,585 DEBUG Processing 91/522 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,604 DEBUG Processing 29/349 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,726 DEBUG Processing 522/536 atomic regions from SNP 156524 to 157124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,754 DEBUG Processing 92/522 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,755 DEBUG Processing 30/349 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,901 DEBUG Processing 523/536 atomic regions from SNP 156824 to 157424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,904 DEBUG Processing 31/349 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,924 DEBUG Processing 93/522 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,056 DEBUG Processing 32/349 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,075 DEBUG Processing 524/536 atomic regions from SNP 157124 to 157724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,094 DEBUG Processing 94/522 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,227 DEBUG Processing 33/349 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,251 DEBUG Processing 525/536 atomic regions from SNP 157424 to 158024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,264 DEBUG Processing 95/522 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,410 DEBUG Processing 34/349 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,425 DEBUG Processing 526/536 atomic regions from SNP 157724 to 158324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,433 DEBUG Processing 96/522 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,593 DEBUG Processing 35/349 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,600 DEBUG Processing 97/522 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,600 DEBUG Processing 527/536 atomic regions from SNP 158024 to 158624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,761 DEBUG Processing 36/349 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,769 DEBUG Processing 98/522 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,774 DEBUG Processing 528/536 atomic regions from SNP 158324 to 158924 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,913 DEBUG Processing 37/349 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,938 DEBUG Processing 99/522 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,945 DEBUG Processing 529/536 atomic regions from SNP 158624 to 159224 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,063 DEBUG Processing 38/349 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,107 DEBUG Processing 100/522 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,119 DEBUG Processing 530/536 atomic regions from SNP 158924 to 159524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,231 DEBUG Processing 39/349 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,276 DEBUG Processing 101/522 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,293 DEBUG Processing 531/536 atomic regions from SNP 159224 to 159824 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,416 DEBUG Processing 40/349 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,445 DEBUG Processing 102/522 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,468 DEBUG Processing 532/536 atomic regions from SNP 159524 to 160124 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,599 DEBUG Processing 41/349 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,614 DEBUG Processing 103/522 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,639 DEBUG Processing 533/536 atomic regions from SNP 159824 to 160424 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,771 DEBUG Processing 42/349 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,800 DEBUG Processing 104/522 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,811 DEBUG Processing 534/536 atomic regions from SNP 160124 to 160724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,944 DEBUG Processing 43/349 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,982 DEBUG Processing 105/522 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,990 DEBUG Processing 535/536 atomic regions from SNP 160424 to 161024 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,122 DEBUG Processing 44/349 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,167 DEBUG Processing 536/536 atomic regions from SNP 160724 to 161324 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,171 DEBUG Processing 106/522 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,277 DEBUG Unique SNPs positions in subchromosome 1: 161325 2025-01-31 09:56:35,294 DEBUG Processing 45/349 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,352 DEBUG Processing 107/522 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,454 DEBUG Processing 46/349 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,524 DEBUG Processing 108/522 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,601 DEBUG Processing 47/349 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,697 DEBUG Processing 109/522 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,751 DEBUG Processing 48/349 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,862 DEBUG Processing 110/522 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,900 DEBUG Processing 49/349 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,028 DEBUG Processing 111/522 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,050 DEBUG Processing 50/349 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,196 DEBUG Processing 112/522 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,202 DEBUG Processing 51/349 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,363 DEBUG Processing 113/522 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,376 DEBUG Processing 52/349 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,525 DEBUG Processing 53/349 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,531 DEBUG Processing 114/522 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,679 DEBUG Processing 54/349 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,701 DEBUG Processing 115/522 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,828 DEBUG Processing 55/349 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,869 DEBUG Processing 116/522 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,977 DEBUG Processing 56/349 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,035 DEBUG Processing 117/522 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,126 DEBUG Processing 57/349 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,201 DEBUG Processing 118/522 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,277 DEBUG Processing 58/349 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,371 DEBUG Processing 119/522 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,432 DEBUG Processing 59/349 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,540 DEBUG Processing 120/522 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,586 DEBUG Processing 60/349 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,706 DEBUG Processing 121/522 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,739 DEBUG Processing 61/349 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,890 DEBUG Processing 122/522 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,894 DEBUG Processing 62/349 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,044 DEBUG Processing 63/349 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,073 DEBUG Processing 123/522 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,192 DEBUG Processing 64/349 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,268 DEBUG Processing 124/522 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,353 DEBUG Processing 65/349 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,464 DEBUG Processing 125/522 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,500 DEBUG Processing 66/349 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,635 DEBUG Processing 126/522 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,648 DEBUG Processing 67/349 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,796 DEBUG Processing 68/349 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,819 DEBUG Processing 127/522 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,947 DEBUG Processing 69/349 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,991 DEBUG Processing 128/522 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,096 DEBUG Processing 70/349 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,158 DEBUG Processing 129/522 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,244 DEBUG Processing 71/349 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,325 DEBUG Processing 130/522 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,392 DEBUG Processing 72/349 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,490 DEBUG Processing 131/522 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,542 DEBUG Processing 73/349 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,658 DEBUG Processing 132/522 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,690 DEBUG Processing 74/349 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,785 DEBUG Subchromosome time: 120.18020809069276, subchromosome SNPs: 161325 2025-01-31 09:56:39,786 DEBUG Estimated BADs: [1.57, 0.78, 4.70, 3.13, 10.96, 1.57, 4.70, 0.78, 4.70, 0.78, 6.27, 0.52, 1.57, 0.52, 1.57, 0.52] SNP counts: [21472, 11633, 11541, 7547, 684, 800, 3003, 15529, 6414, 12433, 2842, 4514, 28796, 2711, 21900, 9506] SNP IDs counts: [21472, 11633, 11541, 7547, 684, 800, 3003, 15529, 6414, 12433, 2842, 4514, 28796, 2711, 21900, 9506] Critical gap: 525260bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.14Mbp, 23.53Mbp, 29.62Mbp, 33.78Mbp, 34.14Mbp, 34.59Mbp, 36.32Mbp, 45.45Mbp, 48.85Mbp, 55.94Mbp, 57.46Mbp, 60.10Mbp, 75.98Mbp, 77.52Mbp, 89.39Mbp, 94.99Mbp] 2025-01-31 09:56:39,786 DEBUG chr17 time: 120.18066218495369 s 2025-01-31 09:56:39,826 DEBUG Processing 133/522 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,845 DEBUG Processing 75/349 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,880 DEBUG chr17: Fitting background model for 16 segments 2025-01-31 09:56:39,997 DEBUG Processing 134/522 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,001 DEBUG Processing 76/349 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,153 DEBUG Processing 77/349 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,165 DEBUG Processing 135/522 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,305 DEBUG Processing 78/349 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,337 DEBUG Processing 136/522 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,453 DEBUG Processing 79/349 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,505 DEBUG Processing 137/522 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,604 DEBUG Processing 80/349 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,674 DEBUG Processing 138/522 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,754 DEBUG Processing 81/349 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,843 DEBUG Processing 139/522 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,904 DEBUG Processing 82/349 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,013 DEBUG Processing 140/522 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,064 DEBUG Processing 83/349 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,181 DEBUG Processing 141/522 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,228 DEBUG Processing 84/349 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,347 DEBUG Processing 142/522 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,378 DEBUG Processing 85/349 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,513 DEBUG Processing 143/522 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,528 DEBUG Processing 86/349 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,680 DEBUG Processing 87/349 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,682 DEBUG Processing 144/522 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,833 DEBUG Processing 88/349 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,853 DEBUG Processing 145/522 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,986 DEBUG Processing 89/349 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,023 DEBUG Processing 146/522 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,137 DEBUG Processing 90/349 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,194 DEBUG Processing 147/522 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,297 DEBUG Processing 91/349 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,363 DEBUG Processing 148/522 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,460 DEBUG Processing 92/349 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,531 DEBUG Processing 149/522 atomic regions from SNP 44548 to 45149 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,607 DEBUG Processing 93/349 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,701 DEBUG Processing 150/522 atomic regions from SNP 44849 to 45450 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,757 DEBUG Processing 94/349 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,868 DEBUG Processing 151/522 atomic regions from SNP 45150 to 45751 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,907 DEBUG Processing 95/349 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,035 DEBUG Processing 152/522 atomic regions from SNP 45451 to 46052 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,059 DEBUG Processing 96/349 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,202 DEBUG Processing 153/522 atomic regions from SNP 45752 to 46353 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,211 DEBUG Processing 97/349 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,368 DEBUG Processing 98/349 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,371 DEBUG Processing 154/522 atomic regions from SNP 46053 to 46654 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,521 DEBUG Processing 99/349 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,541 DEBUG Processing 155/522 atomic regions from SNP 46354 to 46955 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,672 DEBUG Processing 100/349 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,710 DEBUG Processing 156/522 atomic regions from SNP 46655 to 47256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,819 DEBUG Processing 101/349 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,877 DEBUG Processing 157/522 atomic regions from SNP 46956 to 47557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,971 DEBUG Processing 102/349 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,048 DEBUG Processing 158/522 atomic regions from SNP 47257 to 47858 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,120 DEBUG Processing 103/349 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,215 DEBUG Processing 159/522 atomic regions from SNP 47558 to 48159 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,269 DEBUG Processing 104/349 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,381 DEBUG Processing 160/522 atomic regions from SNP 47859 to 48460 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,417 DEBUG Processing 105/349 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,552 DEBUG Processing 161/522 atomic regions from SNP 48160 to 48761 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,568 DEBUG Processing 106/349 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,717 DEBUG Processing 107/349 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,720 DEBUG Processing 162/522 atomic regions from SNP 48461 to 49062 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,868 DEBUG Processing 108/349 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,889 DEBUG Processing 163/522 atomic regions from SNP 48762 to 49363 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,017 DEBUG Processing 109/349 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,060 DEBUG Processing 164/522 atomic regions from SNP 49063 to 49664 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,167 DEBUG Processing 110/349 atomic regions from SNP 32809 to 33410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,231 DEBUG Processing 165/522 atomic regions from SNP 49364 to 49965 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,319 DEBUG Processing 111/349 atomic regions from SNP 33110 to 33711 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,399 DEBUG Processing 166/522 atomic regions from SNP 49665 to 50266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,472 DEBUG Processing 112/349 atomic regions from SNP 33411 to 34012 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,569 DEBUG Processing 167/522 atomic regions from SNP 49966 to 50567 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,624 DEBUG Processing 113/349 atomic regions from SNP 33712 to 34313 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,737 DEBUG Processing 168/522 atomic regions from SNP 50267 to 50868 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,775 DEBUG Processing 114/349 atomic regions from SNP 34013 to 34614 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,915 DEBUG Processing 169/522 atomic regions from SNP 50568 to 51169 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,926 DEBUG Processing 115/349 atomic regions from SNP 34314 to 34915 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,076 DEBUG Processing 116/349 atomic regions from SNP 34615 to 35216 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,104 DEBUG Processing 170/522 atomic regions from SNP 50869 to 51470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,224 DEBUG Processing 117/349 atomic regions from SNP 34916 to 35517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,288 DEBUG Processing 171/522 atomic regions from SNP 51170 to 51771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,397 DEBUG Processing 118/349 atomic regions from SNP 35217 to 35818 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,462 DEBUG Processing 172/522 atomic regions from SNP 51471 to 52072 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,557 DEBUG Processing 119/349 atomic regions from SNP 35518 to 36119 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,630 DEBUG Processing 173/522 atomic regions from SNP 51772 to 52373 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,704 DEBUG Processing 120/349 atomic regions from SNP 35819 to 36420 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,799 DEBUG Processing 174/522 atomic regions from SNP 52073 to 52674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,853 DEBUG Processing 121/349 atomic regions from SNP 36120 to 36721 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,968 DEBUG Processing 175/522 atomic regions from SNP 52374 to 52975 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,001 DEBUG Processing 122/349 atomic regions from SNP 36421 to 37022 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,135 DEBUG Processing 176/522 atomic regions from SNP 52675 to 53276 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,151 DEBUG Processing 123/349 atomic regions from SNP 36722 to 37323 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,299 DEBUG Processing 124/349 atomic regions from SNP 37023 to 37624 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,302 DEBUG Processing 177/522 atomic regions from SNP 52976 to 53577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,470 DEBUG Processing 178/522 atomic regions from SNP 53277 to 53878 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,472 DEBUG Processing 125/349 atomic regions from SNP 37324 to 37925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,641 DEBUG Processing 179/522 atomic regions from SNP 53578 to 54179 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,643 DEBUG Processing 126/349 atomic regions from SNP 37625 to 38226 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,811 DEBUG Processing 180/522 atomic regions from SNP 53879 to 54480 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,820 DEBUG Processing 127/349 atomic regions from SNP 37926 to 38527 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,974 DEBUG Processing 128/349 atomic regions from SNP 38227 to 38828 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,979 DEBUG Processing 181/522 atomic regions from SNP 54180 to 54781 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,127 DEBUG Processing 129/349 atomic regions from SNP 38528 to 39129 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,152 DEBUG Processing 182/522 atomic regions from SNP 54481 to 55082 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,278 DEBUG Processing 130/349 atomic regions from SNP 38829 to 39430 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,323 DEBUG Processing 183/522 atomic regions from SNP 54782 to 55383 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,428 DEBUG Processing 131/349 atomic regions from SNP 39130 to 39731 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,498 DEBUG Processing 184/522 atomic regions from SNP 55083 to 55684 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,576 DEBUG Processing 132/349 atomic regions from SNP 39431 to 40032 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,695 DEBUG Processing 185/522 atomic regions from SNP 55384 to 55985 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,727 DEBUG Processing 133/349 atomic regions from SNP 39732 to 40333 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,876 DEBUG Processing 134/349 atomic regions from SNP 40033 to 40634 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,893 DEBUG Processing 186/522 atomic regions from SNP 55685 to 56286 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,026 DEBUG Processing 135/349 atomic regions from SNP 40334 to 40935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,092 DEBUG Processing 187/522 atomic regions from SNP 55986 to 56587 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,179 DEBUG Processing 136/349 atomic regions from SNP 40635 to 41236 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,298 DEBUG Processing 188/522 atomic regions from SNP 56287 to 56888 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,330 DEBUG Processing 137/349 atomic regions from SNP 40936 to 41537 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,478 DEBUG Processing 138/349 atomic regions from SNP 41237 to 41838 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,490 DEBUG Processing 189/522 atomic regions from SNP 56588 to 57189 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,626 DEBUG Processing 139/349 atomic regions from SNP 41538 to 42139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,675 DEBUG Processing 190/522 atomic regions from SNP 56889 to 57490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,774 DEBUG Processing 140/349 atomic regions from SNP 41839 to 42439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,846 DEBUG Processing 191/522 atomic regions from SNP 57190 to 57791 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,928 DEBUG Processing 141/349 atomic regions from SNP 42139 to 42739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,022 DEBUG Processing 192/522 atomic regions from SNP 57491 to 58092 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,078 DEBUG Processing 142/349 atomic regions from SNP 42439 to 43039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,216 DEBUG Processing 193/522 atomic regions from SNP 57792 to 58393 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,226 DEBUG Processing 143/349 atomic regions from SNP 42739 to 43339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,375 DEBUG Processing 144/349 atomic regions from SNP 43039 to 43639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,405 DEBUG Processing 194/522 atomic regions from SNP 58093 to 58694 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,523 DEBUG Processing 145/349 atomic regions from SNP 43339 to 43939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,594 DEBUG Processing 195/522 atomic regions from SNP 58394 to 58995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,669 DEBUG Processing 146/349 atomic regions from SNP 43639 to 44239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,775 DEBUG Processing 196/522 atomic regions from SNP 58695 to 59296 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,815 DEBUG Processing 147/349 atomic regions from SNP 43939 to 44539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,962 DEBUG Processing 197/522 atomic regions from SNP 58996 to 59597 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,963 DEBUG Processing 148/349 atomic regions from SNP 44239 to 44839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,113 DEBUG Processing 149/349 atomic regions from SNP 44539 to 45139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,159 DEBUG Processing 198/522 atomic regions from SNP 59297 to 59898 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,261 DEBUG Processing 150/349 atomic regions from SNP 44839 to 45439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,355 DEBUG Processing 199/522 atomic regions from SNP 59598 to 60199 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,408 DEBUG Processing 151/349 atomic regions from SNP 45139 to 45739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,548 DEBUG Processing 200/522 atomic regions from SNP 59899 to 60500 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,558 DEBUG Processing 152/349 atomic regions from SNP 45439 to 46039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,707 DEBUG Processing 153/349 atomic regions from SNP 45739 to 46339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,742 DEBUG Processing 201/522 atomic regions from SNP 60200 to 60801 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,869 DEBUG Processing 154/349 atomic regions from SNP 46039 to 46639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,907 DEBUG Processing 202/522 atomic regions from SNP 60501 to 61102 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,044 DEBUG Processing 155/349 atomic regions from SNP 46339 to 46939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,076 DEBUG Processing 203/522 atomic regions from SNP 60802 to 61403 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,210 DEBUG Processing 156/349 atomic regions from SNP 46639 to 47239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,243 DEBUG Processing 204/522 atomic regions from SNP 61103 to 61704 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,366 DEBUG Processing 157/349 atomic regions from SNP 46939 to 47539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,411 DEBUG Processing 205/522 atomic regions from SNP 61404 to 62005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,520 DEBUG Processing 158/349 atomic regions from SNP 47239 to 47839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,594 DEBUG Processing 206/522 atomic regions from SNP 61705 to 62306 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,673 DEBUG Processing 159/349 atomic regions from SNP 47539 to 48139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,793 DEBUG Processing 207/522 atomic regions from SNP 62006 to 62607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,823 DEBUG Processing 160/349 atomic regions from SNP 47839 to 48439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,972 DEBUG Processing 161/349 atomic regions from SNP 48139 to 48739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,987 DEBUG Processing 208/522 atomic regions from SNP 62307 to 62908 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,122 DEBUG Processing 162/349 atomic regions from SNP 48439 to 49039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,184 DEBUG Processing 209/522 atomic regions from SNP 62608 to 63209 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,269 DEBUG Processing 163/349 atomic regions from SNP 48739 to 49339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,386 DEBUG Processing 210/522 atomic regions from SNP 62909 to 63510 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,416 DEBUG Processing 164/349 atomic regions from SNP 49039 to 49639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,564 DEBUG Processing 165/349 atomic regions from SNP 49339 to 49939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,565 DEBUG Processing 211/522 atomic regions from SNP 63210 to 63811 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,716 DEBUG Processing 166/349 atomic regions from SNP 49639 to 50239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,736 DEBUG Processing 212/522 atomic regions from SNP 63511 to 64112 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,866 DEBUG Processing 167/349 atomic regions from SNP 49939 to 50539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,906 DEBUG Processing 213/522 atomic regions from SNP 63812 to 64413 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,014 DEBUG Processing 168/349 atomic regions from SNP 50239 to 50839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,073 DEBUG Processing 214/522 atomic regions from SNP 64113 to 64714 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,164 DEBUG Processing 169/349 atomic regions from SNP 50539 to 51139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,241 DEBUG Processing 215/522 atomic regions from SNP 64414 to 65015 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,314 DEBUG Processing 170/349 atomic regions from SNP 50839 to 51439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,409 DEBUG Processing 216/522 atomic regions from SNP 64715 to 65316 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,462 DEBUG Processing 171/349 atomic regions from SNP 51139 to 51739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,609 DEBUG Processing 172/349 atomic regions from SNP 51439 to 52039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,620 DEBUG Processing 217/522 atomic regions from SNP 65016 to 65617 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,759 DEBUG Processing 173/349 atomic regions from SNP 51739 to 52339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,805 DEBUG Processing 218/522 atomic regions from SNP 65317 to 65918 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,928 DEBUG Processing 174/349 atomic regions from SNP 52039 to 52639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,975 DEBUG Processing 219/522 atomic regions from SNP 65618 to 66219 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,099 DEBUG Processing 175/349 atomic regions from SNP 52339 to 52939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,142 DEBUG Processing 220/522 atomic regions from SNP 65919 to 66520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,264 DEBUG Processing 176/349 atomic regions from SNP 52639 to 53239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,311 DEBUG Processing 221/522 atomic regions from SNP 66220 to 66821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,412 DEBUG Processing 177/349 atomic regions from SNP 52939 to 53539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,480 DEBUG Processing 222/522 atomic regions from SNP 66521 to 67122 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,559 DEBUG Processing 178/349 atomic regions from SNP 53239 to 53839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,649 DEBUG Processing 223/522 atomic regions from SNP 66822 to 67423 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,707 DEBUG Processing 179/349 atomic regions from SNP 53539 to 54139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,818 DEBUG Processing 224/522 atomic regions from SNP 67123 to 67724 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,857 DEBUG Processing 180/349 atomic regions from SNP 53839 to 54439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,985 DEBUG Processing 225/522 atomic regions from SNP 67424 to 68025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,010 DEBUG Processing 181/349 atomic regions from SNP 54139 to 54739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,153 DEBUG Processing 226/522 atomic regions from SNP 67725 to 68326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,160 DEBUG Processing 182/349 atomic regions from SNP 54439 to 55039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,312 DEBUG Processing 183/349 atomic regions from SNP 54739 to 55339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,324 DEBUG Processing 227/522 atomic regions from SNP 68026 to 68627 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,468 DEBUG Processing 184/349 atomic regions from SNP 55039 to 55639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,494 DEBUG Processing 228/522 atomic regions from SNP 68327 to 68928 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,619 DEBUG Processing 185/349 atomic regions from SNP 55339 to 55939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,663 DEBUG Processing 229/522 atomic regions from SNP 68628 to 69229 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,768 DEBUG Processing 186/349 atomic regions from SNP 55639 to 56239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,831 DEBUG Processing 230/522 atomic regions from SNP 68929 to 69530 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,917 DEBUG Processing 187/349 atomic regions from SNP 55939 to 56539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,998 DEBUG Processing 231/522 atomic regions from SNP 69230 to 69831 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,063 DEBUG Processing 188/349 atomic regions from SNP 56239 to 56839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,168 DEBUG Processing 232/522 atomic regions from SNP 69531 to 70132 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,213 DEBUG Processing 189/349 atomic regions from SNP 56539 to 57139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,339 DEBUG Processing 233/522 atomic regions from SNP 69832 to 70433 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,364 DEBUG Processing 190/349 atomic regions from SNP 56839 to 57439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,512 DEBUG Processing 191/349 atomic regions from SNP 57139 to 57739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,522 DEBUG Processing 234/522 atomic regions from SNP 70133 to 70734 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,662 DEBUG Processing 192/349 atomic regions from SNP 57439 to 58039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,690 DEBUG Processing 235/522 atomic regions from SNP 70434 to 71035 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,816 DEBUG Processing 193/349 atomic regions from SNP 57739 to 58339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,857 DEBUG Processing 236/522 atomic regions from SNP 70735 to 71336 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,971 DEBUG Processing 194/349 atomic regions from SNP 58039 to 58639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,030 DEBUG Processing 237/522 atomic regions from SNP 71036 to 71637 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,120 DEBUG Processing 195/349 atomic regions from SNP 58339 to 58939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,198 DEBUG Processing 238/522 atomic regions from SNP 71337 to 71938 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,268 DEBUG Processing 196/349 atomic regions from SNP 58639 to 59239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,366 DEBUG Processing 239/522 atomic regions from SNP 71638 to 72239 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,419 DEBUG Processing 197/349 atomic regions from SNP 58939 to 59539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,533 DEBUG Processing 240/522 atomic regions from SNP 71939 to 72540 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,571 DEBUG Processing 198/349 atomic regions from SNP 59239 to 59839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,702 DEBUG Processing 241/522 atomic regions from SNP 72240 to 72841 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,724 DEBUG Processing 199/349 atomic regions from SNP 59539 to 60139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,871 DEBUG Processing 242/522 atomic regions from SNP 72541 to 73142 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,872 DEBUG Processing 200/349 atomic regions from SNP 59839 to 60439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,027 DEBUG Processing 201/349 atomic regions from SNP 60139 to 60739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,046 DEBUG Processing 243/522 atomic regions from SNP 72842 to 73443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,187 DEBUG Processing 202/349 atomic regions from SNP 60439 to 61039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,219 DEBUG Processing 244/522 atomic regions from SNP 73143 to 73744 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,345 DEBUG Processing 203/349 atomic regions from SNP 60739 to 61339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,388 DEBUG Processing 245/522 atomic regions from SNP 73444 to 74045 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,515 DEBUG Processing 204/349 atomic regions from SNP 61039 to 61639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,556 DEBUG Processing 246/522 atomic regions from SNP 73745 to 74346 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,666 DEBUG Processing 205/349 atomic regions from SNP 61339 to 61939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,724 DEBUG Processing 247/522 atomic regions from SNP 74046 to 74647 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,815 DEBUG Processing 206/349 atomic regions from SNP 61639 to 62239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,894 DEBUG Processing 248/522 atomic regions from SNP 74347 to 74948 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,965 DEBUG Processing 207/349 atomic regions from SNP 61939 to 62539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,060 DEBUG Processing 249/522 atomic regions from SNP 74648 to 75249 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,116 DEBUG Processing 208/349 atomic regions from SNP 62239 to 62839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,227 DEBUG Processing 250/522 atomic regions from SNP 74949 to 75550 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,264 DEBUG Processing 209/349 atomic regions from SNP 62539 to 63139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,397 DEBUG Processing 251/522 atomic regions from SNP 75250 to 75851 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,415 DEBUG Processing 210/349 atomic regions from SNP 62839 to 63439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,569 DEBUG Processing 211/349 atomic regions from SNP 63139 to 63739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,573 DEBUG Processing 252/522 atomic regions from SNP 75551 to 76152 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,725 DEBUG Processing 212/349 atomic regions from SNP 63439 to 64039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,747 DEBUG Processing 253/522 atomic regions from SNP 75852 to 76453 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,876 DEBUG Processing 213/349 atomic regions from SNP 63739 to 64339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,917 DEBUG Processing 254/522 atomic regions from SNP 76153 to 76754 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,024 DEBUG Processing 214/349 atomic regions from SNP 64039 to 64639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,086 DEBUG Processing 255/522 atomic regions from SNP 76454 to 77055 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,172 DEBUG Processing 215/349 atomic regions from SNP 64339 to 64939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,253 DEBUG Processing 256/522 atomic regions from SNP 76755 to 77356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,321 DEBUG Processing 216/349 atomic regions from SNP 64639 to 65239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,419 DEBUG Processing 257/522 atomic regions from SNP 77056 to 77657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,477 DEBUG Processing 217/349 atomic regions from SNP 64939 to 65539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,592 DEBUG Processing 258/522 atomic regions from SNP 77357 to 77958 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,631 DEBUG Processing 218/349 atomic regions from SNP 65239 to 65839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,786 DEBUG Processing 219/349 atomic regions from SNP 65539 to 66139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,788 DEBUG Processing 259/522 atomic regions from SNP 77658 to 78259 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,939 DEBUG Processing 220/349 atomic regions from SNP 65839 to 66439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,957 DEBUG Processing 260/522 atomic regions from SNP 77959 to 78560 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,089 DEBUG Processing 221/349 atomic regions from SNP 66139 to 66739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,128 DEBUG Processing 261/522 atomic regions from SNP 78260 to 78861 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,244 DEBUG Processing 222/349 atomic regions from SNP 66439 to 67039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,302 DEBUG Processing 262/522 atomic regions from SNP 78561 to 79162 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,413 DEBUG Processing 223/349 atomic regions from SNP 66739 to 67339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,479 DEBUG Processing 263/522 atomic regions from SNP 78862 to 79463 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,585 DEBUG Processing 224/349 atomic regions from SNP 67039 to 67639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,680 DEBUG Processing 264/522 atomic regions from SNP 79163 to 79764 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,748 DEBUG Processing 225/349 atomic regions from SNP 67339 to 67939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,849 DEBUG Processing 265/522 atomic regions from SNP 79464 to 80065 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,898 DEBUG Processing 226/349 atomic regions from SNP 67639 to 68239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,023 DEBUG Processing 266/522 atomic regions from SNP 79765 to 80366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,050 DEBUG Processing 227/349 atomic regions from SNP 67939 to 68539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,193 DEBUG Processing 267/522 atomic regions from SNP 80066 to 80667 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,200 DEBUG Processing 228/349 atomic regions from SNP 68239 to 68839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,354 DEBUG Processing 229/349 atomic regions from SNP 68539 to 69139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,361 DEBUG Processing 268/522 atomic regions from SNP 80367 to 80968 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,521 DEBUG Processing 230/349 atomic regions from SNP 68839 to 69439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,528 DEBUG Processing 269/522 atomic regions from SNP 80668 to 81269 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,694 DEBUG Processing 270/522 atomic regions from SNP 80969 to 81570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,701 DEBUG Processing 231/349 atomic regions from SNP 69139 to 69739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,861 DEBUG Processing 271/522 atomic regions from SNP 81270 to 81871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,878 DEBUG Processing 232/349 atomic regions from SNP 69439 to 70039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,028 DEBUG Processing 272/522 atomic regions from SNP 81571 to 82172 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,050 DEBUG Processing 233/349 atomic regions from SNP 69739 to 70339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,196 DEBUG Processing 273/522 atomic regions from SNP 81872 to 82473 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,200 DEBUG Processing 234/349 atomic regions from SNP 70039 to 70639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,350 DEBUG Processing 235/349 atomic regions from SNP 70339 to 70939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,366 DEBUG Processing 274/522 atomic regions from SNP 82173 to 82774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,505 DEBUG Processing 236/349 atomic regions from SNP 70639 to 71239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,536 DEBUG Processing 275/522 atomic regions from SNP 82474 to 83075 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,656 DEBUG Processing 237/349 atomic regions from SNP 70939 to 71539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,703 DEBUG Processing 276/522 atomic regions from SNP 82775 to 83376 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,805 DEBUG Processing 238/349 atomic regions from SNP 71239 to 71839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,868 DEBUG Processing 277/522 atomic regions from SNP 83076 to 83677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,953 DEBUG Processing 239/349 atomic regions from SNP 71539 to 72139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,040 DEBUG Processing 278/522 atomic regions from SNP 83377 to 83978 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,100 DEBUG Processing 240/349 atomic regions from SNP 71839 to 72439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,212 DEBUG Processing 279/522 atomic regions from SNP 83678 to 84279 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,264 DEBUG Processing 241/349 atomic regions from SNP 72139 to 72739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,394 DEBUG Processing 280/522 atomic regions from SNP 83979 to 84580 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,434 DEBUG Processing 242/349 atomic regions from SNP 72439 to 73039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,563 DEBUG Processing 281/522 atomic regions from SNP 84280 to 84881 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,593 DEBUG Processing 243/349 atomic regions from SNP 72739 to 73339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,733 DEBUG Processing 282/522 atomic regions from SNP 84581 to 85182 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,741 DEBUG Processing 244/349 atomic regions from SNP 73039 to 73639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,898 DEBUG Processing 245/349 atomic regions from SNP 73339 to 73939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,904 DEBUG Processing 283/522 atomic regions from SNP 84882 to 85483 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,076 DEBUG Processing 284/522 atomic regions from SNP 85183 to 85784 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,078 DEBUG Processing 246/349 atomic regions from SNP 73639 to 74239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,248 DEBUG Processing 285/522 atomic regions from SNP 85484 to 86085 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,261 DEBUG Processing 247/349 atomic regions from SNP 73939 to 74539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,418 DEBUG Processing 286/522 atomic regions from SNP 85785 to 86386 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,435 DEBUG Processing 248/349 atomic regions from SNP 74239 to 74839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,587 DEBUG Processing 249/349 atomic regions from SNP 74539 to 75139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,588 DEBUG Processing 287/522 atomic regions from SNP 86086 to 86687 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,746 DEBUG Processing 250/349 atomic regions from SNP 74839 to 75439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,757 DEBUG Processing 288/522 atomic regions from SNP 86387 to 86988 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,925 DEBUG Processing 251/349 atomic regions from SNP 75139 to 75739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,925 DEBUG Processing 289/522 atomic regions from SNP 86688 to 87289 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,090 DEBUG Processing 252/349 atomic regions from SNP 75439 to 76039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,096 DEBUG Processing 290/522 atomic regions from SNP 86989 to 87590 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,243 DEBUG Processing 253/349 atomic regions from SNP 75739 to 76339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,265 DEBUG Processing 291/522 atomic regions from SNP 87290 to 87891 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,418 DEBUG Processing 254/349 atomic regions from SNP 76039 to 76639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,432 DEBUG Processing 292/522 atomic regions from SNP 87591 to 88192 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,594 DEBUG Processing 255/349 atomic regions from SNP 76339 to 76939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,603 DEBUG Processing 293/522 atomic regions from SNP 87892 to 88493 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,758 DEBUG Processing 256/349 atomic regions from SNP 76639 to 77239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,774 DEBUG Processing 294/522 atomic regions from SNP 88193 to 88794 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,934 DEBUG Processing 257/349 atomic regions from SNP 76939 to 77539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,944 DEBUG Processing 295/522 atomic regions from SNP 88494 to 89095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,108 DEBUG Processing 258/349 atomic regions from SNP 77239 to 77839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,112 DEBUG Processing 296/522 atomic regions from SNP 88795 to 89395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,282 DEBUG Processing 297/522 atomic regions from SNP 89095 to 89695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,288 DEBUG Processing 259/349 atomic regions from SNP 77539 to 78139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,449 DEBUG Processing 298/522 atomic regions from SNP 89395 to 89995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,468 DEBUG Processing 260/349 atomic regions from SNP 77839 to 78439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,616 DEBUG Processing 299/522 atomic regions from SNP 89695 to 90295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,641 DEBUG Processing 261/349 atomic regions from SNP 78139 to 78739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,785 DEBUG Processing 300/522 atomic regions from SNP 89995 to 90595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,816 DEBUG Processing 262/349 atomic regions from SNP 78439 to 79039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,952 DEBUG Processing 301/522 atomic regions from SNP 90295 to 90895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,995 DEBUG Processing 263/349 atomic regions from SNP 78739 to 79339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,124 DEBUG Processing 302/522 atomic regions from SNP 90595 to 91195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,169 DEBUG Processing 264/349 atomic regions from SNP 79039 to 79639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,292 DEBUG Processing 303/522 atomic regions from SNP 90895 to 91495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,324 DEBUG Processing 265/349 atomic regions from SNP 79339 to 79939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,465 DEBUG Processing 304/522 atomic regions from SNP 91195 to 91795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,482 DEBUG Processing 266/349 atomic regions from SNP 79639 to 80239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,635 DEBUG Processing 305/522 atomic regions from SNP 91495 to 92095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,638 DEBUG Processing 267/349 atomic regions from SNP 79939 to 80539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,789 DEBUG Processing 268/349 atomic regions from SNP 80239 to 80839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,802 DEBUG Processing 306/522 atomic regions from SNP 91795 to 92395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,939 DEBUG Processing 269/349 atomic regions from SNP 80539 to 81139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,970 DEBUG Processing 307/522 atomic regions from SNP 92095 to 92695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,093 DEBUG Processing 270/349 atomic regions from SNP 80839 to 81439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,142 DEBUG Processing 308/522 atomic regions from SNP 92395 to 92995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,244 DEBUG Processing 271/349 atomic regions from SNP 81139 to 81739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,309 DEBUG Processing 309/522 atomic regions from SNP 92695 to 93295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,396 DEBUG Processing 272/349 atomic regions from SNP 81439 to 82039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,480 DEBUG Processing 310/522 atomic regions from SNP 92995 to 93595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,542 DEBUG Processing 273/349 atomic regions from SNP 81739 to 82339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,646 DEBUG Processing 311/522 atomic regions from SNP 93295 to 93895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,690 DEBUG Processing 274/349 atomic regions from SNP 82039 to 82639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,815 DEBUG Processing 312/522 atomic regions from SNP 93595 to 94195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,839 DEBUG Processing 275/349 atomic regions from SNP 82339 to 82939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,983 DEBUG Processing 313/522 atomic regions from SNP 93895 to 94495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,988 DEBUG Processing 276/349 atomic regions from SNP 82639 to 83239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,144 DEBUG Processing 277/349 atomic regions from SNP 82939 to 83539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,162 DEBUG Processing 314/522 atomic regions from SNP 94195 to 94795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,295 DEBUG Processing 278/349 atomic regions from SNP 83239 to 83839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,329 DEBUG Processing 315/522 atomic regions from SNP 94495 to 95095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,442 DEBUG Processing 279/349 atomic regions from SNP 83539 to 84139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,497 DEBUG Processing 316/522 atomic regions from SNP 94795 to 95395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,592 DEBUG Processing 280/349 atomic regions from SNP 83839 to 84439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,664 DEBUG Processing 317/522 atomic regions from SNP 95095 to 95695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,743 DEBUG Processing 281/349 atomic regions from SNP 84139 to 84739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,833 DEBUG Processing 318/522 atomic regions from SNP 95395 to 95995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,894 DEBUG Processing 282/349 atomic regions from SNP 84439 to 85039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,023 DEBUG Processing 319/522 atomic regions from SNP 95695 to 96295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,043 DEBUG Processing 283/349 atomic regions from SNP 84739 to 85339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,194 DEBUG Processing 284/349 atomic regions from SNP 85039 to 85639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,215 DEBUG Processing 320/522 atomic regions from SNP 95995 to 96595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,346 DEBUG Processing 285/349 atomic regions from SNP 85339 to 85939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,400 DEBUG Processing 321/522 atomic regions from SNP 96295 to 96895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,499 DEBUG Processing 286/349 atomic regions from SNP 85639 to 86239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,566 DEBUG Processing 322/522 atomic regions from SNP 96595 to 97195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,651 DEBUG Processing 287/349 atomic regions from SNP 85939 to 86539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,740 DEBUG Processing 323/522 atomic regions from SNP 96895 to 97495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,805 DEBUG Processing 288/349 atomic regions from SNP 86239 to 86839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,906 DEBUG Processing 324/522 atomic regions from SNP 97195 to 97795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,958 DEBUG Processing 289/349 atomic regions from SNP 86539 to 87139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,074 DEBUG Processing 325/522 atomic regions from SNP 97495 to 98095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,114 DEBUG Processing 290/349 atomic regions from SNP 86839 to 87439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,241 DEBUG Processing 326/522 atomic regions from SNP 97795 to 98395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,266 DEBUG Processing 291/349 atomic regions from SNP 87139 to 87739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,416 DEBUG Processing 327/522 atomic regions from SNP 98095 to 98695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,420 DEBUG Processing 292/349 atomic regions from SNP 87439 to 88039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,571 DEBUG Processing 293/349 atomic regions from SNP 87739 to 88339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,585 DEBUG Processing 328/522 atomic regions from SNP 98395 to 98995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,727 DEBUG Processing 294/349 atomic regions from SNP 88039 to 88639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,757 DEBUG Processing 329/522 atomic regions from SNP 98695 to 99295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,881 DEBUG Processing 295/349 atomic regions from SNP 88339 to 88939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,927 DEBUG Processing 330/522 atomic regions from SNP 98995 to 99595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,031 DEBUG Processing 296/349 atomic regions from SNP 88639 to 89239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,094 DEBUG Processing 331/522 atomic regions from SNP 99295 to 99895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,181 DEBUG Processing 297/349 atomic regions from SNP 88939 to 89539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,262 DEBUG Processing 332/522 atomic regions from SNP 99595 to 100195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,327 DEBUG Processing 298/349 atomic regions from SNP 89239 to 89839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,432 DEBUG Processing 333/522 atomic regions from SNP 99895 to 100495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,478 DEBUG Processing 299/349 atomic regions from SNP 89539 to 90139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,599 DEBUG Processing 334/522 atomic regions from SNP 100195 to 100795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,640 DEBUG Processing 300/349 atomic regions from SNP 89839 to 90439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,763 DEBUG Processing 335/522 atomic regions from SNP 100495 to 101095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,820 DEBUG Processing 301/349 atomic regions from SNP 90139 to 90739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,926 DEBUG Processing 336/522 atomic regions from SNP 100795 to 101395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,987 DEBUG Processing 302/349 atomic regions from SNP 90439 to 91039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,095 DEBUG Processing 337/522 atomic regions from SNP 101095 to 101695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,139 DEBUG Processing 303/349 atomic regions from SNP 90739 to 91339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,264 DEBUG Processing 338/522 atomic regions from SNP 101395 to 101995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,311 DEBUG Processing 304/349 atomic regions from SNP 91039 to 91639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,434 DEBUG Processing 339/522 atomic regions from SNP 101695 to 102295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,486 DEBUG Processing 305/349 atomic regions from SNP 91339 to 91939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,600 DEBUG Processing 340/522 atomic regions from SNP 101995 to 102595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,636 DEBUG Processing 306/349 atomic regions from SNP 91639 to 92239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,766 DEBUG Processing 341/522 atomic regions from SNP 102295 to 102895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,785 DEBUG Processing 307/349 atomic regions from SNP 91939 to 92539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,937 DEBUG Processing 308/349 atomic regions from SNP 92239 to 92839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,950 DEBUG Processing 342/522 atomic regions from SNP 102595 to 103195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,086 DEBUG Processing 309/349 atomic regions from SNP 92539 to 93139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,142 DEBUG Processing 343/522 atomic regions from SNP 102895 to 103495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,237 DEBUG Processing 310/349 atomic regions from SNP 92839 to 93439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,341 DEBUG Processing 344/522 atomic regions from SNP 103195 to 103795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,388 DEBUG Processing 311/349 atomic regions from SNP 93139 to 93739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,527 DEBUG Processing 345/522 atomic regions from SNP 103495 to 104095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,549 DEBUG Processing 312/349 atomic regions from SNP 93439 to 94039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,717 DEBUG Processing 346/522 atomic regions from SNP 103795 to 104395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,719 DEBUG Processing 313/349 atomic regions from SNP 93739 to 94339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,868 DEBUG Processing 314/349 atomic regions from SNP 94039 to 94639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,909 DEBUG Processing 347/522 atomic regions from SNP 104095 to 104695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,016 DEBUG Processing 315/349 atomic regions from SNP 94339 to 94939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,106 DEBUG Processing 348/522 atomic regions from SNP 104395 to 104995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,168 DEBUG Processing 316/349 atomic regions from SNP 94639 to 95239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,307 DEBUG Processing 349/522 atomic regions from SNP 104695 to 105295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,319 DEBUG Processing 317/349 atomic regions from SNP 94939 to 95539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,471 DEBUG Processing 318/349 atomic regions from SNP 95239 to 95839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,505 DEBUG Processing 350/522 atomic regions from SNP 104995 to 105595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,622 DEBUG Processing 319/349 atomic regions from SNP 95539 to 96139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,690 DEBUG Processing 351/522 atomic regions from SNP 105295 to 105895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,780 DEBUG Processing 320/349 atomic regions from SNP 95839 to 96439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,858 DEBUG Processing 352/522 atomic regions from SNP 105595 to 106195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,938 DEBUG Processing 321/349 atomic regions from SNP 96139 to 96739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,025 DEBUG Processing 353/522 atomic regions from SNP 105895 to 106495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,096 DEBUG Processing 322/349 atomic regions from SNP 96439 to 97039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,195 DEBUG Processing 354/522 atomic regions from SNP 106195 to 106795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,258 DEBUG Processing 323/349 atomic regions from SNP 96739 to 97339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,358 DEBUG Processing 355/522 atomic regions from SNP 106495 to 107095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,411 DEBUG Processing 324/349 atomic regions from SNP 97039 to 97639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,528 DEBUG Processing 356/522 atomic regions from SNP 106795 to 107395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,558 DEBUG Processing 325/349 atomic regions from SNP 97339 to 97939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,694 DEBUG Processing 357/522 atomic regions from SNP 107095 to 107695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,704 DEBUG Processing 326/349 atomic regions from SNP 97639 to 98239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,856 DEBUG Processing 327/349 atomic regions from SNP 97939 to 98539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,862 DEBUG Processing 358/522 atomic regions from SNP 107395 to 107995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,006 DEBUG Processing 328/349 atomic regions from SNP 98239 to 98839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,032 DEBUG Processing 359/522 atomic regions from SNP 107695 to 108295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,155 DEBUG Processing 329/349 atomic regions from SNP 98539 to 99139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,199 DEBUG Processing 360/522 atomic regions from SNP 107995 to 108595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,303 DEBUG Processing 330/349 atomic regions from SNP 98839 to 99439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,366 DEBUG Processing 361/522 atomic regions from SNP 108295 to 108895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,450 DEBUG Processing 331/349 atomic regions from SNP 99139 to 99739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,550 DEBUG Processing 362/522 atomic regions from SNP 108595 to 109195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,599 DEBUG Processing 332/349 atomic regions from SNP 99439 to 100039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,733 DEBUG Processing 363/522 atomic regions from SNP 108895 to 109495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,746 DEBUG Processing 333/349 atomic regions from SNP 99739 to 100339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,894 DEBUG Processing 334/349 atomic regions from SNP 100039 to 100639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,901 DEBUG Processing 364/522 atomic regions from SNP 109195 to 109795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,044 DEBUG Processing 335/349 atomic regions from SNP 100339 to 100939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,068 DEBUG Processing 365/522 atomic regions from SNP 109495 to 110095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,195 DEBUG Processing 336/349 atomic regions from SNP 100639 to 101239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,234 DEBUG Processing 366/522 atomic regions from SNP 109795 to 110395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,342 DEBUG Processing 337/349 atomic regions from SNP 100939 to 101539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,422 DEBUG Processing 367/522 atomic regions from SNP 110095 to 110695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,489 DEBUG Processing 338/349 atomic regions from SNP 101239 to 101839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,612 DEBUG Processing 368/522 atomic regions from SNP 110395 to 110995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,647 DEBUG Processing 339/349 atomic regions from SNP 101539 to 102139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,777 DEBUG Processing 369/522 atomic regions from SNP 110695 to 111295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,796 DEBUG Processing 340/349 atomic regions from SNP 101839 to 102439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,944 DEBUG Processing 370/522 atomic regions from SNP 110995 to 111595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,946 DEBUG Processing 341/349 atomic regions from SNP 102139 to 102739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,097 DEBUG Processing 342/349 atomic regions from SNP 102439 to 103039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,111 DEBUG Processing 371/522 atomic regions from SNP 111295 to 111895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,247 DEBUG Processing 343/349 atomic regions from SNP 102739 to 103339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,281 DEBUG Processing 372/522 atomic regions from SNP 111595 to 112195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,395 DEBUG Processing 344/349 atomic regions from SNP 103039 to 103639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,451 DEBUG Processing 373/522 atomic regions from SNP 111895 to 112495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,540 DEBUG Processing 345/349 atomic regions from SNP 103339 to 103939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,619 DEBUG Processing 374/522 atomic regions from SNP 112195 to 112795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,688 DEBUG Processing 346/349 atomic regions from SNP 103639 to 104239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,787 DEBUG Processing 375/522 atomic regions from SNP 112495 to 113095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,839 DEBUG Processing 347/349 atomic regions from SNP 103939 to 104539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,953 DEBUG Processing 376/522 atomic regions from SNP 112795 to 113395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,006 DEBUG Processing 348/349 atomic regions from SNP 104239 to 104839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,119 DEBUG Processing 377/522 atomic regions from SNP 113095 to 113695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,157 DEBUG Processing 349/349 atomic regions from SNP 104539 to 105139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,262 DEBUG Unique SNPs positions in subchromosome 1: 105140 2025-01-31 09:57:22,285 DEBUG Processing 378/522 atomic regions from SNP 113395 to 113995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,452 DEBUG Processing 379/522 atomic regions from SNP 113695 to 114295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,617 DEBUG Processing 380/522 atomic regions from SNP 113995 to 114595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,786 DEBUG Processing 381/522 atomic regions from SNP 114295 to 114895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,952 DEBUG Processing 382/522 atomic regions from SNP 114595 to 115195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,116 DEBUG Processing 383/522 atomic regions from SNP 114895 to 115495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,293 DEBUG Processing 384/522 atomic regions from SNP 115195 to 115795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,487 DEBUG Processing 385/522 atomic regions from SNP 115495 to 116095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,683 DEBUG Processing 386/522 atomic regions from SNP 115795 to 116395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,878 DEBUG Processing 387/522 atomic regions from SNP 116095 to 116695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,904 DEBUG Subchromosome time: 69.79991238936782, subchromosome SNPs: 105140 2025-01-31 09:57:23,904 DEBUG Estimated BADs: [4.70, 0.78, 3.13, 0.78, 3.13, 0.78, 1.57, 0.78, 1.57, 0.52, 1.57, 3.13, 1.57, 0.39, 1.57] SNP counts: [8228, 881, 4461, 970, 823, 6104, 3614, 9626, 19297, 3537, 11095, 9907, 4500, 5080, 17017] SNP IDs counts: [8228, 881, 4461, 970, 823, 6104, 3614, 9626, 19297, 3537, 11095, 9907, 4500, 5080, 17017] Critical gap: 412187bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 7.62Mbp, 8.24Mbp, 10.99Mbp, 11.57Mbp, 12.02Mbp, 15.51Mbp, 17.45Mbp, 22.83Mbp, 33.24Mbp, 35.34Mbp, 41.59Mbp, 46.85Mbp, 49.28Mbp, 52.18Mbp, 61.43Mbp] 2025-01-31 09:57:23,904 DEBUG chr19 time: 69.80046581290662 s 2025-01-31 09:57:23,965 DEBUG chr19: Fitting background model for 15 segments 2025-01-31 09:57:24,074 DEBUG Processing 388/522 atomic regions from SNP 116395 to 116995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,243 DEBUG Processing 389/522 atomic regions from SNP 116695 to 117295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,409 DEBUG Processing 390/522 atomic regions from SNP 116995 to 117595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,591 DEBUG Processing 391/522 atomic regions from SNP 117295 to 117895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,778 DEBUG Processing 392/522 atomic regions from SNP 117595 to 118195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,949 DEBUG Processing 393/522 atomic regions from SNP 117895 to 118495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,130 DEBUG Processing 394/522 atomic regions from SNP 118195 to 118795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,316 DEBUG Processing 395/522 atomic regions from SNP 118495 to 119095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,482 DEBUG Processing 396/522 atomic regions from SNP 118795 to 119395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,647 DEBUG Processing 397/522 atomic regions from SNP 119095 to 119695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,811 DEBUG Processing 398/522 atomic regions from SNP 119395 to 119995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,980 DEBUG Processing 399/522 atomic regions from SNP 119695 to 120295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,146 DEBUG Processing 400/522 atomic regions from SNP 119995 to 120595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,313 DEBUG Processing 401/522 atomic regions from SNP 120295 to 120895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,483 DEBUG Processing 402/522 atomic regions from SNP 120595 to 121195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,647 DEBUG Processing 403/522 atomic regions from SNP 120895 to 121495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,814 DEBUG Processing 404/522 atomic regions from SNP 121195 to 121795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,012 DEBUG Processing 405/522 atomic regions from SNP 121495 to 122095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,192 DEBUG Processing 406/522 atomic regions from SNP 121795 to 122395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,360 DEBUG Processing 407/522 atomic regions from SNP 122095 to 122695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,526 DEBUG Processing 408/522 atomic regions from SNP 122395 to 122995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,694 DEBUG Processing 409/522 atomic regions from SNP 122695 to 123295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,861 DEBUG Processing 410/522 atomic regions from SNP 122995 to 123595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,027 DEBUG Processing 411/522 atomic regions from SNP 123295 to 123895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,193 DEBUG Processing 412/522 atomic regions from SNP 123595 to 124195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,361 DEBUG Processing 413/522 atomic regions from SNP 123895 to 124495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,528 DEBUG Processing 414/522 atomic regions from SNP 124195 to 124795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,695 DEBUG Processing 415/522 atomic regions from SNP 124495 to 125095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,861 DEBUG Processing 416/522 atomic regions from SNP 124795 to 125395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,027 DEBUG Processing 417/522 atomic regions from SNP 125095 to 125695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,197 DEBUG Processing 418/522 atomic regions from SNP 125395 to 125995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,365 DEBUG Processing 419/522 atomic regions from SNP 125695 to 126295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,538 DEBUG Processing 420/522 atomic regions from SNP 125995 to 126595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,706 DEBUG Processing 421/522 atomic regions from SNP 126295 to 126895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,872 DEBUG Processing 422/522 atomic regions from SNP 126595 to 127195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,043 DEBUG Processing 423/522 atomic regions from SNP 126895 to 127495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,230 DEBUG Processing 424/522 atomic regions from SNP 127195 to 127795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,414 DEBUG Processing 425/522 atomic regions from SNP 127495 to 128095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,578 DEBUG Processing 426/522 atomic regions from SNP 127795 to 128395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,744 DEBUG Processing 427/522 atomic regions from SNP 128095 to 128695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,909 DEBUG Processing 428/522 atomic regions from SNP 128395 to 128995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,076 DEBUG Processing 429/522 atomic regions from SNP 128695 to 129295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,266 DEBUG Processing 430/522 atomic regions from SNP 128995 to 129595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,447 DEBUG Processing 431/522 atomic regions from SNP 129295 to 129895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,638 DEBUG Processing 432/522 atomic regions from SNP 129595 to 130195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,806 DEBUG Processing 433/522 atomic regions from SNP 129895 to 130495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,981 DEBUG Processing 434/522 atomic regions from SNP 130195 to 130795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,164 DEBUG Processing 435/522 atomic regions from SNP 130495 to 131095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,329 DEBUG Processing 436/522 atomic regions from SNP 130795 to 131395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,494 DEBUG Processing 437/522 atomic regions from SNP 131095 to 131695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,661 DEBUG Processing 438/522 atomic regions from SNP 131395 to 131995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,831 DEBUG Processing 439/522 atomic regions from SNP 131695 to 132295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,000 DEBUG Processing 440/522 atomic regions from SNP 131995 to 132595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,167 DEBUG Processing 441/522 atomic regions from SNP 132295 to 132895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,332 DEBUG Processing 442/522 atomic regions from SNP 132595 to 133195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,506 DEBUG Processing 443/522 atomic regions from SNP 132895 to 133495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,697 DEBUG Processing 444/522 atomic regions from SNP 133195 to 133795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,875 DEBUG Processing 445/522 atomic regions from SNP 133495 to 134095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,043 DEBUG Processing 446/522 atomic regions from SNP 133795 to 134395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,209 DEBUG Processing 447/522 atomic regions from SNP 134095 to 134695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,399 DEBUG Processing 448/522 atomic regions from SNP 134395 to 134995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,602 DEBUG Processing 449/522 atomic regions from SNP 134695 to 135295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,789 DEBUG Processing 450/522 atomic regions from SNP 134995 to 135595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,980 DEBUG Processing 451/522 atomic regions from SNP 135295 to 135895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,155 DEBUG Processing 452/522 atomic regions from SNP 135595 to 136195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,319 DEBUG Processing 453/522 atomic regions from SNP 135895 to 136495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,484 DEBUG Processing 454/522 atomic regions from SNP 136195 to 136795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,651 DEBUG Processing 455/522 atomic regions from SNP 136495 to 137095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,815 DEBUG Processing 456/522 atomic regions from SNP 136795 to 137395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,979 DEBUG Processing 457/522 atomic regions from SNP 137095 to 137695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,145 DEBUG Processing 458/522 atomic regions from SNP 137395 to 137995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,314 DEBUG Processing 459/522 atomic regions from SNP 137695 to 138295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,494 DEBUG Processing 460/522 atomic regions from SNP 137995 to 138595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,677 DEBUG Processing 461/522 atomic regions from SNP 138295 to 138895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,870 DEBUG Processing 462/522 atomic regions from SNP 138595 to 139195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,068 DEBUG Processing 463/522 atomic regions from SNP 138895 to 139495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,251 DEBUG Processing 464/522 atomic regions from SNP 139195 to 139795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,427 DEBUG Processing 465/522 atomic regions from SNP 139495 to 140095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,609 DEBUG Processing 466/522 atomic regions from SNP 139795 to 140395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,780 DEBUG Processing 467/522 atomic regions from SNP 140095 to 140695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,947 DEBUG Processing 468/522 atomic regions from SNP 140395 to 140995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,118 DEBUG Processing 469/522 atomic regions from SNP 140695 to 141295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,291 DEBUG Processing 470/522 atomic regions from SNP 140995 to 141595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,458 DEBUG Processing 471/522 atomic regions from SNP 141295 to 141895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,625 DEBUG Processing 472/522 atomic regions from SNP 141595 to 142195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,798 DEBUG Processing 473/522 atomic regions from SNP 141895 to 142495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,965 DEBUG Processing 474/522 atomic regions from SNP 142195 to 142795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,132 DEBUG Processing 475/522 atomic regions from SNP 142495 to 143095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,299 DEBUG Processing 476/522 atomic regions from SNP 142795 to 143395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,471 DEBUG Processing 477/522 atomic regions from SNP 143095 to 143695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,655 DEBUG Processing 478/522 atomic regions from SNP 143395 to 143995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,839 DEBUG Processing 479/522 atomic regions from SNP 143695 to 144295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,006 DEBUG Processing 480/522 atomic regions from SNP 143995 to 144595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,173 DEBUG Processing 481/522 atomic regions from SNP 144295 to 144895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,341 DEBUG Processing 482/522 atomic regions from SNP 144595 to 145195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,509 DEBUG Processing 483/522 atomic regions from SNP 144895 to 145495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,674 DEBUG Processing 484/522 atomic regions from SNP 145195 to 145795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,842 DEBUG Processing 485/522 atomic regions from SNP 145495 to 146095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,009 DEBUG Processing 486/522 atomic regions from SNP 145795 to 146395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,177 DEBUG Processing 487/522 atomic regions from SNP 146095 to 146695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,345 DEBUG Processing 488/522 atomic regions from SNP 146395 to 146995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,520 DEBUG Processing 489/522 atomic regions from SNP 146695 to 147295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,693 DEBUG Processing 490/522 atomic regions from SNP 146995 to 147595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,872 DEBUG Processing 491/522 atomic regions from SNP 147295 to 147895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,061 DEBUG Processing 492/522 atomic regions from SNP 147595 to 148195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,240 DEBUG Processing 493/522 atomic regions from SNP 147895 to 148495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,409 DEBUG Processing 494/522 atomic regions from SNP 148195 to 148795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,577 DEBUG Processing 495/522 atomic regions from SNP 148495 to 149095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,751 DEBUG Processing 496/522 atomic regions from SNP 148795 to 149395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,920 DEBUG Processing 497/522 atomic regions from SNP 149095 to 149695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,087 DEBUG Processing 498/522 atomic regions from SNP 149395 to 149995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,254 DEBUG Processing 499/522 atomic regions from SNP 149695 to 150295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,426 DEBUG Processing 500/522 atomic regions from SNP 149995 to 150595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,591 DEBUG Processing 501/522 atomic regions from SNP 150295 to 150895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,762 DEBUG Processing 502/522 atomic regions from SNP 150595 to 151195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,928 DEBUG Processing 503/522 atomic regions from SNP 150895 to 151495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,095 DEBUG Processing 504/522 atomic regions from SNP 151195 to 151795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,260 DEBUG Processing 505/522 atomic regions from SNP 151495 to 152095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,429 DEBUG Processing 506/522 atomic regions from SNP 151795 to 152395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,594 DEBUG Processing 507/522 atomic regions from SNP 152095 to 152695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,758 DEBUG Processing 508/522 atomic regions from SNP 152395 to 152995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,925 DEBUG Processing 509/522 atomic regions from SNP 152695 to 153295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,092 DEBUG Processing 510/522 atomic regions from SNP 152995 to 153595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,257 DEBUG Processing 511/522 atomic regions from SNP 153295 to 153895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,423 DEBUG Processing 512/522 atomic regions from SNP 153595 to 154195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,588 DEBUG Processing 513/522 atomic regions from SNP 153895 to 154495 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,755 DEBUG Processing 514/522 atomic regions from SNP 154195 to 154795 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,920 DEBUG Processing 515/522 atomic regions from SNP 154495 to 155095 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,091 DEBUG Processing 516/522 atomic regions from SNP 154795 to 155395 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,258 DEBUG Processing 517/522 atomic regions from SNP 155095 to 155695 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,425 DEBUG Processing 518/522 atomic regions from SNP 155395 to 155995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,592 DEBUG Processing 519/522 atomic regions from SNP 155695 to 156295 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,760 DEBUG Processing 520/522 atomic regions from SNP 155995 to 156595 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,925 DEBUG Processing 521/522 atomic regions from SNP 156295 to 156895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,092 DEBUG Processing 522/522 atomic regions from SNP 156595 to 157195 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,194 DEBUG Unique SNPs positions in subchromosome 1: 157196 2025-01-31 09:57:47,921 DEBUG Subchromosome time: 111.03806355781853, subchromosome SNPs: 157196 2025-01-31 09:57:47,921 DEBUG Estimated BADs: [1.31, 0.44, 1.31, 0.66, 1.31, 3.94, 1.31, 3.94, 1.31, 3.94, 1.31, 5.26, 1.31, 0.66, 2.63, 1.31, 0.66] SNP counts: [25440, 2630, 17132, 5327, 4661, 4993, 1657, 867, 40036, 2048, 10524, 874, 7220, 3676, 8112, 12385, 9614] SNP IDs counts: [25440, 2630, 17132, 5327, 4661, 4993, 1657, 867, 40036, 2048, 10524, 874, 7220, 3676, 8112, 12385, 9614] Critical gap: 507278bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 17.43Mbp, 19.00Mbp, 28.63Mbp, 31.61Mbp, 34.21Mbp, 36.81Mbp, 37.81Mbp, 38.26Mbp, 60.49Mbp, 61.55Mbp, 67.20Mbp, 67.65Mbp, 71.62Mbp, 73.70Mbp, 78.12Mbp, 84.85Mbp, 90.70Mbp] 2025-01-31 09:57:47,921 DEBUG chr18 time: 111.03852450288832 s 2025-01-31 09:57:48,002 DEBUG chr18: Fitting background model for 17 segments 2025-01-31 09:58:02,947 DEBUG Results of fit_background_model emitted. 2025-01-31 09:58:03,109 INFO Signal to noise fit: SPOT=0.27±0.13 2025-01-31 09:58:03,114 INFO Found 1 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 09:58:03,161 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:58:03,161 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 09:58:07,544 DEBUG chr13: Fitting background model for 1 segments 2025-01-31 09:58:09,915 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 09:58:09,992 INFO Signal to noise fit: SPOT=0.27±0.13 2025-01-31 09:58:09,998 INFO Final SPOT score: 0.27±0.13. Refitted 1 segments. 2025-01-31 09:58:10,037 INFO Estimating per-bp parameters of background model 2025-01-31 09:58:10,047 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:58:10,047 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 09:58:15,814 DEBUG chr5:3002500-5895251: Successfully fit background model for 2,538,279 bp. Use segment r for 0 bp 2025-01-31 09:58:16,306 DEBUG chr3:3000000-8887751: Successfully fit background model for 5,095,660 bp. Use segment r for 0 bp 2025-01-31 09:58:16,445 DEBUG chr3:8887751-10226751: Successfully fit background model for 1,230,522 bp. Use segment r for 0 bp 2025-01-31 09:58:16,795 DEBUG chr2:3051000-7564251: Successfully fit background model for 4,246,947 bp. Use segment r for 0 bp 2025-01-31 09:58:16,932 DEBUG chr2:7564251-8996251: Successfully fit background model for 1,261,964 bp. Use segment r for 0 bp 2025-01-31 09:58:17,324 DEBUG chrX:3055000-7549251: Successfully fit background model for 2,001,191 bp. Use segment r for 1,817 bp 2025-01-31 09:58:17,365 DEBUG chrX:7549251-7898251: Successfully fit background model for 341,633 bp. Use segment r for 0 bp 2025-01-31 09:58:17,441 DEBUG chr3:10226751-19132251: Successfully fit background model for 7,494,965 bp. Use segment r for 0 bp 2025-01-31 09:58:17,529 DEBUG chr3:19132251-19891751: Successfully fit background model for 704,541 bp. Use segment r for 0 bp 2025-01-31 09:58:17,553 DEBUG chr2:8996251-15443001: Successfully fit background model for 5,888,524 bp. Use segment r for 0 bp 2025-01-31 09:58:17,786 DEBUG chr2:15443001-18016251: Successfully fit background model for 2,296,544 bp. Use segment r for 0 bp 2025-01-31 09:58:17,799 DEBUG chr2:18016251-18067751: Successfully fit background model for 50,984 bp. Use segment r for 0 bp 2025-01-31 09:58:17,957 DEBUG chr4:3050000-16384751: Successfully fit background model for 11,690,969 bp. Use segment r for 1,469 bp 2025-01-31 09:58:18,013 DEBUG chrX:7898251-14198251: Successfully fit background model for 5,543,918 bp. Use segment r for 0 bp 2025-01-31 09:58:18,124 DEBUG chr1:3000500-9539251: Successfully fit background model for 5,695,981 bp. Use segment r for 0 bp 2025-01-31 09:58:18,170 DEBUG chr1:9539251-9858251: Successfully fit background model for 305,755 bp. Use segment r for 0 bp 2025-01-31 09:58:18,200 DEBUG chr4:16384751-18919251: Successfully fit background model for 2,194,745 bp. Use segment r for 0 bp 2025-01-31 09:58:18,351 DEBUG chr5:5895251-20871251: Successfully fit background model for 11,935,589 bp. Use segment r for 3,381 bp 2025-01-31 09:58:18,462 DEBUG chr2:18067751-24916751: Successfully fit background model for 6,099,200 bp. Use segment r for 0 bp 2025-01-31 09:58:18,520 DEBUG chr3:19891751-28530251: Successfully fit background model for 7,658,546 bp. Use segment r for 0 bp 2025-01-31 09:58:18,554 DEBUG chr4:18919251-22646751: Successfully fit background model for 3,256,169 bp. Use segment r for 0 bp 2025-01-31 09:58:18,671 DEBUG chr5:20871251-24319251: Successfully fit background model for 3,176,355 bp. Use segment r for 0 bp 2025-01-31 09:58:18,746 DEBUG chr5:24319251-25018251: Successfully fit background model for 676,918 bp. Use segment r for 0 bp 2025-01-31 09:58:18,871 DEBUG chr1:9858251-16617751: Successfully fit background model for 6,100,542 bp. Use segment r for 0 bp 2025-01-31 09:58:19,181 DEBUG chr2:24916751-32931751: Successfully fit background model for 7,774,015 bp. Use segment r for 0 bp 2025-01-31 09:58:19,475 DEBUG chr2:32931751-36243251: Successfully fit background model for 3,231,645 bp. Use segment r for 0 bp 2025-01-31 09:58:19,527 DEBUG chr5:25018251-30516251: Successfully fit background model for 4,917,519 bp. Use segment r for 142 bp 2025-01-31 09:58:19,554 DEBUG chr2:36243251-36979751: Successfully fit background model for 608,492 bp. Use segment r for 0 bp 2025-01-31 09:58:19,579 DEBUG chr3:28530251-38004251: Successfully fit background model for 8,738,099 bp. Use segment r for 0 bp 2025-01-31 09:58:19,604 DEBUG chr5:30516251-31254251: Successfully fit background model for 716,619 bp. Use segment r for 0 bp 2025-01-31 09:58:19,661 DEBUG chr4:22646751-32609251: Successfully fit background model for 8,947,964 bp. Use segment r for 0 bp 2025-01-31 09:58:19,750 DEBUG chr5:31254251-32846751: Successfully fit background model for 1,492,497 bp. Use segment r for 0 bp 2025-01-31 09:58:19,774 DEBUG chr2:36979751-39376751: Successfully fit background model for 2,241,067 bp. Use segment r for 0 bp 2025-01-31 09:58:19,779 DEBUG chr3:38004251-40098251: Successfully fit background model for 1,916,318 bp. Use segment r for 0 bp 2025-01-31 09:58:19,868 DEBUG chr4:32609251-34775251: Successfully fit background model for 2,035,818 bp. Use segment r for 0 bp 2025-01-31 09:58:19,929 DEBUG chr3:40098251-41686751: Successfully fit background model for 1,406,076 bp. Use segment r for 0 bp 2025-01-31 09:58:20,087 DEBUG chrX:14198251-26915001: Successfully fit background model for 9,091,838 bp. Use segment r for 1,395 bp 2025-01-31 09:58:20,107 DEBUG chr2:39376751-43106251: Successfully fit background model for 3,369,983 bp. Use segment r for 0 bp 2025-01-31 09:58:20,132 DEBUG chr5:32846751-36691251: Successfully fit background model for 3,685,946 bp. Use segment r for 0 bp 2025-01-31 09:58:20,406 DEBUG chr1:16617751-30793251: Successfully fit background model for 12,657,643 bp. Use segment r for 0 bp 2025-01-31 09:58:20,409 DEBUG chr4:34775251-40134751: Successfully fit background model for 4,770,022 bp. Use segment r for 0 bp 2025-01-31 09:58:20,428 DEBUG chr5:36691251-39951251: Successfully fit background model for 3,068,388 bp. Use segment r for 0 bp 2025-01-31 09:58:20,578 DEBUG chr4:40134751-41857501: Successfully fit background model for 1,562,355 bp. Use segment r for 0 bp 2025-01-31 09:58:20,626 DEBUG chr4:42724000-43059751: Successfully fit background model for 261,675 bp. Use segment r for 0 bp 2025-01-31 09:58:20,671 DEBUG chr1:30793251-33456751: Successfully fit background model for 2,334,433 bp. Use segment r for 0 bp 2025-01-31 09:58:20,684 DEBUG chr3:41686751-48904751: Successfully fit background model for 6,385,676 bp. Use segment r for 0 bp 2025-01-31 09:58:20,896 DEBUG chr3:48904751-51154751: Successfully fit background model for 1,978,462 bp. Use segment r for 0 bp 2025-01-31 09:58:20,959 DEBUG chr3:51154751-51734251: Successfully fit background model for 558,348 bp. Use segment r for 0 bp 2025-01-31 09:58:21,055 DEBUG chr4:43059751-47508751: Successfully fit background model for 4,283,238 bp. Use segment r for 0 bp 2025-01-31 09:58:21,256 DEBUG chr1:33456751-39505251: Successfully fit background model for 5,774,913 bp. Use segment r for 0 bp 2025-01-31 09:58:21,261 DEBUG chrX:31132500-38866251: Successfully fit background model for 2,793,037 bp. Use segment r for 668 bp 2025-01-31 09:58:21,262 DEBUG chr4:47508751-49689751: Successfully fit background model for 2,012,497 bp. Use segment r for 0 bp 2025-01-31 09:58:21,472 DEBUG chr4:49689751-51991251: Successfully fit background model for 2,030,817 bp. Use segment r for 0 bp 2025-01-31 09:58:21,670 DEBUG chr5:39951251-51149751: Successfully fit background model for 10,138,508 bp. Use segment r for 0 bp 2025-01-31 09:58:21,673 DEBUG chr1:39505251-44101251: Successfully fit background model for 4,394,305 bp. Use segment r for 0 bp 2025-01-31 09:58:21,688 DEBUG chr1:44101251-44155751: Successfully fit background model for 53,346 bp. Use segment r for 0 bp 2025-01-31 09:58:21,985 DEBUG chr5:51149751-54529251: Successfully fit background model for 3,246,557 bp. Use segment r for 0 bp 2025-01-31 09:58:22,248 DEBUG chrX:38866251-48255751: Successfully fit background model for 8,129,253 bp. Use segment r for 0 bp 2025-01-31 09:58:22,475 DEBUG chrX:48255751-50549251: Successfully fit background model for 1,948,875 bp. Use segment r for 0 bp 2025-01-31 09:58:22,495 DEBUG chrX:50549251-50637251: Successfully fit background model for 80,397 bp. Use segment r for 0 bp 2025-01-31 09:58:22,498 DEBUG chr1:44155751-52077751: Successfully fit background model for 6,890,131 bp. Use segment r for 0 bp 2025-01-31 09:58:22,574 DEBUG chr1:52077751-52684251: Successfully fit background model for 566,040 bp. Use segment r for 0 bp 2025-01-31 09:58:22,807 DEBUG chr1:52684251-55025751: Successfully fit background model for 2,114,461 bp. Use segment r for 0 bp 2025-01-31 09:58:22,819 DEBUG chr2:43106251-67754751: Successfully fit background model for 22,699,194 bp. Use segment r for 0 bp 2025-01-31 09:58:22,836 DEBUG chr1:55025751-55239751: Successfully fit background model for 206,861 bp. Use segment r for 0 bp 2025-01-31 09:58:22,864 DEBUG chr5:54529251-63285751: Successfully fit background model for 7,737,890 bp. Use segment r for 0 bp 2025-01-31 09:58:23,029 DEBUG chr3:51734251-70877251: Successfully fit background model for 17,331,605 bp. Use segment r for 0 bp 2025-01-31 09:58:23,222 DEBUG chr1:55239751-59119251: Successfully fit background model for 3,595,866 bp. Use segment r for 0 bp 2025-01-31 09:58:23,306 DEBUG chr1:59119251-59892251: Successfully fit background model for 751,718 bp. Use segment r for 0 bp 2025-01-31 09:58:23,344 DEBUG chr5:63285751-68536251: Successfully fit background model for 4,941,748 bp. Use segment r for 0 bp 2025-01-31 09:58:23,584 DEBUG chr1:59892251-62687251: Successfully fit background model for 2,613,015 bp. Use segment r for 0 bp 2025-01-31 09:58:23,589 DEBUG chr4:51991251-64316251: Successfully fit background model for 9,924,938 bp. Use segment r for 1,060 bp 2025-01-31 09:58:23,622 DEBUG chr5:68536251-71598751: Successfully fit background model for 2,695,153 bp. Use segment r for 0 bp 2025-01-31 09:58:23,815 DEBUG chr1:62687251-65190751: Successfully fit background model for 2,354,368 bp. Use segment r for 0 bp 2025-01-31 09:58:23,836 DEBUG chr3:70877251-79509251: Successfully fit background model for 7,694,392 bp. Use segment r for 0 bp 2025-01-31 09:58:24,212 DEBUG chr2:67754751-81009501: Successfully fit background model for 12,626,716 bp. Use segment r for 0 bp 2025-01-31 09:58:24,226 DEBUG chr5:71598751-77975751: Successfully fit background model for 6,028,245 bp. Use segment r for 0 bp 2025-01-31 09:58:24,243 DEBUG chr3:79509251-84014251: Successfully fit background model for 4,149,318 bp. Use segment r for 0 bp 2025-01-31 09:58:24,550 DEBUG chr2:81009501-84649251: Successfully fit background model for 3,098,218 bp. Use segment r for 0 bp 2025-01-31 09:58:24,586 DEBUG chr3:84014251-87725751: Successfully fit background model for 3,533,996 bp. Use segment r for 0 bp 2025-01-31 09:58:24,622 DEBUG chr2:84649251-85320751: Successfully fit background model for 633,867 bp. Use segment r for 0 bp 2025-01-31 09:58:24,708 DEBUG chr5:77975751-83452501: Successfully fit background model for 4,902,870 bp. Use segment r for 0 bp 2025-01-31 09:58:24,837 DEBUG chr1:65190751-74206001: Successfully fit background model for 8,364,897 bp. Use segment r for 0 bp 2025-01-31 09:58:24,842 DEBUG chr3:87725751-90431751: Successfully fit background model for 2,570,355 bp. Use segment r for 0 bp 2025-01-31 09:58:24,932 DEBUG chr1:74206001-75053751: Successfully fit background model for 819,476 bp. Use segment r for 0 bp 2025-01-31 09:58:24,932 DEBUG chrX:50637251-73219751: Successfully fit background model for 18,367,886 bp. Use segment r for 0 bp 2025-01-31 09:58:24,987 DEBUG chr1:75053751-75480251: Successfully fit background model for 355,183 bp. Use segment r for 0 bp 2025-01-31 09:58:25,000 DEBUG chr2:85320751-89476251: Successfully fit background model for 3,630,823 bp. Use segment r for 0 bp 2025-01-31 09:58:25,131 DEBUG chr2:89476251-90843751: Successfully fit background model for 1,036,867 bp. Use segment r for 0 bp 2025-01-31 09:58:25,193 DEBUG chrX:73219751-75778251: Successfully fit background model for 2,040,071 bp. Use segment r for 0 bp 2025-01-31 09:58:25,237 DEBUG chr3:90431751-94360751: Successfully fit background model for 3,018,893 bp. Use segment r for 0 bp 2025-01-31 09:58:25,290 DEBUG chr2:90843751-92315751: Successfully fit background model for 1,442,734 bp. Use segment r for 0 bp 2025-01-31 09:58:25,359 DEBUG chr4:64316251-80489501: Successfully fit background model for 14,320,712 bp. Use segment r for 0 bp 2025-01-31 09:58:25,459 DEBUG chr3:94360751-96762751: Successfully fit background model for 2,200,228 bp. Use segment r for 0 bp 2025-01-31 09:58:25,543 DEBUG chr2:92315751-95053501: Successfully fit background model for 2,620,178 bp. Use segment r for 0 bp 2025-01-31 09:58:25,572 DEBUG chr5:83452501-92073751: Successfully fit background model for 7,723,516 bp. Use segment r for 0 bp 2025-01-31 09:58:25,822 DEBUG chr3:96762751-100408251: Successfully fit background model for 3,215,129 bp. Use segment r for 0 bp 2025-01-31 09:58:25,917 DEBUG chr4:80489501-86574251: Successfully fit background model for 5,604,137 bp. Use segment r for 0 bp 2025-01-31 09:58:26,038 DEBUG chr1:75480251-84837751: Successfully fit background model for 8,625,890 bp. Use segment r for 0 bp 2025-01-31 09:58:26,132 DEBUG chr2:95053501-100935001: Successfully fit background model for 4,871,975 bp. Use segment r for 0 bp 2025-01-31 09:58:26,204 DEBUG chr1:84837751-86386251: Successfully fit background model for 1,007,396 bp. Use segment r for 0 bp 2025-01-31 09:58:26,207 DEBUG chr4:86574251-89663751: Successfully fit background model for 2,758,570 bp. Use segment r for 0 bp 2025-01-31 09:58:26,232 DEBUG chr1:86386251-86549751: Successfully fit background model for 158,826 bp. Use segment r for 0 bp 2025-01-31 09:58:26,483 DEBUG chr4:89663751-92524751: Successfully fit background model for 2,497,845 bp. Use segment r for 0 bp 2025-01-31 09:58:26,757 DEBUG chr2:100935001-107980251: Successfully fit background model for 6,663,688 bp. Use segment r for 0 bp 2025-01-31 09:58:26,768 DEBUG chr3:100408251-108828251: Successfully fit background model for 7,987,142 bp. Use segment r for 0 bp 2025-01-31 09:58:26,867 DEBUG chrX:75778251-91301251: Successfully fit background model for 13,356,761 bp. Use segment r for 0 bp 2025-01-31 09:58:26,891 DEBUG chr4:92524751-97053751: Successfully fit background model for 4,074,220 bp. Use segment r for 0 bp 2025-01-31 09:58:26,922 DEBUG chr1:86549751-93601751: Successfully fit background model for 6,767,733 bp. Use segment r for 0 bp 2025-01-31 09:58:26,959 DEBUG chr1:93601751-93829751: Successfully fit background model for 222,606 bp. Use segment r for 0 bp 2025-01-31 09:58:27,389 DEBUG chr5:92073751-103653251: Successfully fit background model for 8,816,044 bp. Use segment r for 5,689 bp 2025-01-31 09:58:27,408 DEBUG chr3:108828251-115657251: Successfully fit background model for 5,866,009 bp. Use segment r for 0 bp 2025-01-31 09:58:27,450 DEBUG chr5:103653251-104076251: Successfully fit background model for 405,717 bp. Use segment r for 0 bp 2025-01-31 09:58:27,527 DEBUG chr3:115657251-116766251: Successfully fit background model for 1,060,237 bp. Use segment r for 0 bp 2025-01-31 09:58:27,747 DEBUG chr2:107980251-118494751: Successfully fit background model for 9,609,513 bp. Use segment r for 0 bp 2025-01-31 09:58:27,826 DEBUG chrX:91301251-101253251: Successfully fit background model for 8,412,575 bp. Use segment r for 0 bp 2025-01-31 09:58:27,901 DEBUG chr4:97053751-106580251: Successfully fit background model for 8,955,950 bp. Use segment r for 0 bp 2025-01-31 09:58:27,910 DEBUG chr3:116766251-121147751: Successfully fit background model for 4,049,777 bp. Use segment r for 0 bp 2025-01-31 09:58:28,147 DEBUG chr2:118494751-122996501: Successfully fit background model for 4,275,690 bp. Use segment r for 0 bp 2025-01-31 09:58:28,235 DEBUG chr2:122996501-123876751: Successfully fit background model for 797,562 bp. Use segment r for 0 bp 2025-01-31 09:58:28,240 DEBUG chr4:106580251-110290751: Successfully fit background model for 3,529,326 bp. Use segment r for 0 bp 2025-01-31 09:58:28,241 DEBUG chrX:101253251-105959251: Successfully fit background model for 4,151,034 bp. Use segment r for 0 bp 2025-01-31 09:58:28,318 DEBUG chr1:93829751-105971751: Successfully fit background model for 10,598,014 bp. Use segment r for 0 bp 2025-01-31 09:58:28,411 DEBUG chr4:110290751-112078251: Successfully fit background model for 1,573,047 bp. Use segment r for 0 bp 2025-01-31 09:58:28,505 DEBUG chr1:105971751-107826251: Successfully fit background model for 1,693,248 bp. Use segment r for 0 bp 2025-01-31 09:58:28,525 DEBUG chr2:123876751-127204751: Successfully fit background model for 3,126,048 bp. Use segment r for 0 bp 2025-01-31 09:58:28,530 DEBUG chr5:104076251-113724251: Successfully fit background model for 8,893,051 bp. Use segment r for 0 bp 2025-01-31 09:58:28,587 DEBUG chr4:112078251-113965751: Successfully fit background model for 1,651,101 bp. Use segment r for 0 bp 2025-01-31 09:58:28,705 DEBUG chr5:113724251-115441251: Successfully fit background model for 1,669,580 bp. Use segment r for 0 bp 2025-01-31 09:58:28,753 DEBUG chr4:113965751-115728751: Successfully fit background model for 1,508,538 bp. Use segment r for 0 bp 2025-01-31 09:58:28,912 DEBUG chr3:121147751-130732251: Successfully fit background model for 9,020,323 bp. Use segment r for 0 bp 2025-01-31 09:58:28,915 DEBUG chr2:127204751-131263751: Successfully fit background model for 3,910,801 bp. Use segment r for 0 bp 2025-01-31 09:58:29,160 DEBUG chr5:115441251-120100751: Successfully fit background model for 4,562,234 bp. Use segment r for 0 bp 2025-01-31 09:58:29,327 DEBUG chr3:130732251-135267751: Successfully fit background model for 4,068,439 bp. Use segment r for 0 bp 2025-01-31 09:58:29,388 DEBUG chr3:135267751-135794751: Successfully fit background model for 507,843 bp. Use segment r for 0 bp 2025-01-31 09:58:29,454 DEBUG chr2:131263751-137228751: Successfully fit background model for 5,602,165 bp. Use segment r for 0 bp 2025-01-31 09:58:29,689 DEBUG chr1:107826251-118310251: Successfully fit background model for 9,126,380 bp. Use segment r for 0 bp 2025-01-31 09:58:29,718 DEBUG chr5:120100751-125428751: Successfully fit background model for 5,102,963 bp. Use segment r for 0 bp 2025-01-31 09:58:29,731 DEBUG chr3:135794751-139196251: Successfully fit background model for 3,191,141 bp. Use segment r for 0 bp 2025-01-31 09:58:29,856 DEBUG chr1:118310251-119985751: Successfully fit background model for 1,627,362 bp. Use segment r for 0 bp 2025-01-31 09:58:29,981 DEBUG chr3:139196251-141982251: Successfully fit background model for 2,540,347 bp. Use segment r for 0 bp 2025-01-31 09:58:30,074 DEBUG chr2:137228751-143870751: Successfully fit background model for 6,142,583 bp. Use segment r for 0 bp 2025-01-31 09:58:30,506 DEBUG chr3:141982251-147088751: Successfully fit background model for 4,849,439 bp. Use segment r for 0 bp 2025-01-31 09:58:30,549 DEBUG chr5:125428751-134170251: Successfully fit background model for 8,329,095 bp. Use segment r for 0 bp 2025-01-31 09:58:30,886 DEBUG chr5:134170251-137793751: Successfully fit background model for 3,463,637 bp. Use segment r for 0 bp 2025-01-31 09:58:30,887 DEBUG chr2:143870751-152288251: Successfully fit background model for 7,561,685 bp. Use segment r for 0 bp 2025-01-31 09:58:30,915 DEBUG chr3:147088751-151731251: Successfully fit background model for 4,375,705 bp. Use segment r for 0 bp 2025-01-31 09:58:31,082 DEBUG chr1:119985751-131019751: Successfully fit background model for 10,258,876 bp. Use segment r for 0 bp 2025-01-31 09:58:31,158 DEBUG chrX:105959251-124247501: Successfully fit background model for 14,717,220 bp. Use segment r for 6,809 bp 2025-01-31 09:58:31,412 DEBUG chr4:115728751-131714751: Successfully fit background model for 14,490,677 bp. Use segment r for 445 bp 2025-01-31 09:58:31,443 DEBUG chr2:152288251-158583251: Successfully fit background model for 6,051,522 bp. Use segment r for 0 bp 2025-01-31 09:58:31,491 DEBUG chr3:151731251-158082751: Successfully fit background model for 5,957,827 bp. Use segment r for 0 bp 2025-01-31 09:58:31,565 DEBUG chr1:131019751-135965251: Successfully fit background model for 4,818,544 bp. Use segment r for 0 bp 2025-01-31 09:58:31,678 DEBUG chr3:158082751-160039680: Successfully fit background model for 1,577,304 bp. Use segment r for 0 bp 2025-01-31 09:58:31,849 DEBUG chr4:131714751-136284751: Successfully fit background model for 4,449,333 bp. Use segment r for 0 bp 2025-01-31 09:58:31,862 DEBUG chr2:158583251-163317251: Successfully fit background model for 4,525,646 bp. Use segment r for 0 bp 2025-01-31 09:58:31,888 DEBUG chrX:126001000-133861751: Successfully fit background model for 6,756,204 bp. Use segment r for 0 bp 2025-01-31 09:58:31,897 DEBUG chr1:135965251-139544001: Successfully fit background model for 3,374,056 bp. Use segment r for 0 bp 2025-01-31 09:58:32,241 DEBUG chr2:163317251-166984751: Successfully fit background model for 3,533,541 bp. Use segment r for 0 bp 2025-01-31 09:58:32,245 DEBUG chr1:139544001-142796501: Successfully fit background model for 2,789,218 bp. Use segment r for 0 bp 2025-01-31 09:58:32,357 DEBUG chr2:166984751-168094751: Successfully fit background model for 1,070,969 bp. Use segment r for 0 bp 2025-01-31 09:58:32,403 DEBUG chr5:137793751-151834684: Successfully fit background model for 12,973,853 bp. Use segment r for 0 bp 2025-01-31 09:58:32,405 DEBUG chr1:142796501-144439251: Successfully fit background model for 1,390,062 bp. Use segment r for 0 bp 2025-01-31 09:58:32,431 DEBUG chr4:136284751-141788751: Successfully fit background model for 5,389,422 bp. Use segment r for 0 bp 2025-01-31 09:58:32,875 DEBUG chr1:144439251-149376751: Successfully fit background model for 4,346,062 bp. Use segment r for 0 bp 2025-01-31 09:58:33,312 DEBUG chr4:141788751-147847251: Successfully fit background model for 3,827,433 bp. Use segment r for 2,808 bp 2025-01-31 09:58:33,472 DEBUG chr1:149376751-154982251: Successfully fit background model for 5,257,743 bp. Use segment r for 0 bp 2025-01-31 09:58:33,504 DEBUG chr2:168094751-175179501: Successfully fit background model for 6,742,440 bp. Use segment r for 8 bp 2025-01-31 09:58:33,654 DEBUG chr1:154982251-156916751: Successfully fit background model for 1,820,919 bp. Use segment r for 0 bp 2025-01-31 09:58:33,804 DEBUG chr2:176700000-179794251: Successfully fit background model for 1,904,766 bp. Use segment r for 0 bp 2025-01-31 09:58:33,957 DEBUG chr1:156916751-160122751: Successfully fit background model for 3,060,188 bp. Use segment r for 0 bp 2025-01-31 09:58:33,971 DEBUG chr4:147847251-154890251: Successfully fit background model for 6,900,815 bp. Use segment r for 0 bp 2025-01-31 09:58:34,069 DEBUG chr2:179794251-182113224: Successfully fit background model for 2,128,140 bp. Use segment r for 0 bp 2025-01-31 09:58:34,131 DEBUG chr4:154890251-156508116: Successfully fit background model for 1,341,295 bp. Use segment r for 0 bp 2025-01-31 09:58:34,943 DEBUG chr1:160122751-168206251: Successfully fit background model for 7,530,482 bp. Use segment r for 0 bp 2025-01-31 09:58:35,212 DEBUG chr1:168206251-170834751: Successfully fit background model for 2,471,764 bp. Use segment r for 0 bp 2025-01-31 09:58:35,273 DEBUG chr1:170834751-171326751: Successfully fit background model for 453,396 bp. Use segment r for 0 bp 2025-01-31 09:58:35,304 DEBUG chrX:133861751-150431001: Successfully fit background model for 12,531,197 bp. Use segment r for 1,195 bp 2025-01-31 09:58:35,407 DEBUG chr1:171326751-172302751: Successfully fit background model for 910,217 bp. Use segment r for 0 bp 2025-01-31 09:58:35,501 DEBUG chrX:150431001-152149751: Successfully fit background model for 1,529,867 bp. Use segment r for 0 bp 2025-01-31 09:58:36,304 DEBUG chr1:172302751-178303251: Successfully fit background model for 5,414,684 bp. Use segment r for 0 bp 2025-01-31 09:58:36,367 DEBUG chrX:152149751-159251251: Successfully fit background model for 6,072,125 bp. Use segment r for 0 bp 2025-01-31 09:58:36,830 DEBUG chrX:159251251-164244751: Successfully fit background model for 4,598,994 bp. Use segment r for 0 bp 2025-01-31 09:58:37,132 DEBUG chr1:178303251-185423251: Successfully fit background model for 6,734,296 bp. Use segment r for 0 bp 2025-01-31 09:58:37,157 DEBUG chr1:185423251-185517751: Successfully fit background model for 93,672 bp. Use segment r for 0 bp 2025-01-31 09:58:37,352 DEBUG chrX:164244751-169968751: Successfully fit background model for 5,212,443 bp. Use segment r for 0 bp 2025-01-31 09:58:37,472 DEBUG chrX:169968751-171031299: Successfully fit background model for 5,730 bp. Use segment r for 0 bp 2025-01-31 09:58:37,801 DEBUG chr1:185517751-190706251: Successfully fit background model for 4,992,295 bp. Use segment r for 0 bp 2025-01-31 09:58:38,239 DEBUG chr1:190706251-195471971: Successfully fit background model for 4,368,782 bp. Use segment r for 0 bp 2025-01-31 10:00:14,730 DEBUG chr6:3050000-9182751: Successfully fit background model for 5,452,250 bp. Use segment r for 0 bp 2025-01-31 10:00:15,087 DEBUG chr7:3004000-3589751: Successfully fit background model for 439,045 bp. Use segment r for 0 bp 2025-01-31 10:00:15,242 DEBUG chr7:3589751-5111751: Successfully fit background model for 1,220,399 bp. Use segment r for 0 bp 2025-01-31 10:00:15,300 DEBUG chr7:5111751-5699751: Successfully fit background model for 430,471 bp. Use segment r for 0 bp 2025-01-31 10:00:15,446 DEBUG chr7:5699751-7302751: Successfully fit background model for 1,343,396 bp. Use segment r for 0 bp 2025-01-31 10:00:16,238 DEBUG chr7:7302751-12897251: Successfully fit background model for 2,162,718 bp. Use segment r for 4,694 bp 2025-01-31 10:00:16,264 DEBUG chr7:12897251-13064251: Successfully fit background model for 159,548 bp. Use segment r for 0 bp 2025-01-31 10:00:16,665 DEBUG chr7:13064251-15898251: Successfully fit background model for 1,748,819 bp. Use segment r for 248 bp 2025-01-31 10:00:16,777 DEBUG chr7:15898251-17105251: Successfully fit background model for 1,170,193 bp. Use segment r for 0 bp 2025-01-31 10:00:16,781 DEBUG chr6:9182751-28247751: Successfully fit background model for 16,878,549 bp. Use segment r for 0 bp 2025-01-31 10:00:17,032 DEBUG chr7:17105251-18944751: Successfully fit background model for 1,304,956 bp. Use segment r for 1,733 bp 2025-01-31 10:00:17,139 DEBUG chr7:18944751-20073001: Successfully fit background model for 1,076,278 bp. Use segment r for 0 bp 2025-01-31 10:00:17,345 DEBUG chr7:22765000-24298251: Successfully fit background model for 840,641 bp. Use segment r for 7,850 bp 2025-01-31 10:00:17,399 DEBUG chr6:28247751-35248251: Successfully fit background model for 6,699,311 bp. Use segment r for 0 bp 2025-01-31 10:00:17,496 DEBUG chr7:24298251-25952751: Successfully fit background model for 1,552,057 bp. Use segment r for 0 bp 2025-01-31 10:00:17,573 DEBUG chr7:25952751-26778751: Successfully fit background model for 650,223 bp. Use segment r for 0 bp 2025-01-31 10:00:17,694 DEBUG chr6:35248251-38431751: Successfully fit background model for 2,941,726 bp. Use segment r for 0 bp 2025-01-31 10:00:17,783 DEBUG chr6:38431751-39372751: Successfully fit background model for 925,504 bp. Use segment r for 0 bp 2025-01-31 10:00:17,964 DEBUG chr7:26778751-31114251: Successfully fit background model for 4,017,556 bp. Use segment r for 0 bp 2025-01-31 10:00:18,219 DEBUG chr6:39372751-43995251: Successfully fit background model for 4,135,009 bp. Use segment r for 0 bp 2025-01-31 10:00:18,332 DEBUG chr7:31114251-33789251: Successfully fit background model for 1,086,868 bp. Use segment r for 3,773 bp 2025-01-31 10:00:18,435 DEBUG chr6:43995251-46268251: Successfully fit background model for 2,068,401 bp. Use segment r for 0 bp 2025-01-31 10:00:18,565 DEBUG chr6:46268251-47593751: Successfully fit background model for 1,181,645 bp. Use segment r for 0 bp 2025-01-31 10:00:18,604 DEBUG chr6:47593751-47931001: Successfully fit background model for 197,564 bp. Use segment r for 0 bp 2025-01-31 10:00:18,761 DEBUG chr7:33789251-38294751: Successfully fit background model for 4,335,538 bp. Use segment r for 0 bp 2025-01-31 10:00:19,616 DEBUG chr7:38294751-44242251: Successfully fit background model for 4,373,103 bp. Use segment r for 2,707 bp 2025-01-31 10:00:19,750 DEBUG chr7:44242251-45681251: Successfully fit background model for 1,412,290 bp. Use segment r for 0 bp 2025-01-31 10:00:19,895 DEBUG chr6:47931001-59523251: Successfully fit background model for 10,819,561 bp. Use segment r for 0 bp 2025-01-31 10:00:19,896 DEBUG chr7:45681251-47165501: Successfully fit background model for 1,454,484 bp. Use segment r for 0 bp 2025-01-31 10:00:20,009 DEBUG chr7:47165501-48424501: Successfully fit background model for 996,684 bp. Use segment r for 0 bp 2025-01-31 10:00:20,155 DEBUG chr7:48424501-50057501: Successfully fit background model for 1,552,358 bp. Use segment r for 0 bp 2025-01-31 10:00:20,625 DEBUG chr6:59523251-66960751: Successfully fit background model for 6,593,257 bp. Use segment r for 0 bp 2025-01-31 10:00:20,791 DEBUG chr6:66960751-68722751: Successfully fit background model for 1,509,708 bp. Use segment r for 0 bp 2025-01-31 10:00:20,979 DEBUG chr6:68722751-70713251: Successfully fit background model for 1,524,545 bp. Use segment r for 0 bp 2025-01-31 10:00:21,139 DEBUG chr6:70713251-72508751: Successfully fit background model for 1,732,870 bp. Use segment r for 0 bp 2025-01-31 10:00:21,310 DEBUG chr6:72508751-74360751: Successfully fit background model for 1,703,628 bp. Use segment r for 0 bp 2025-01-31 10:00:21,647 DEBUG chr7:50057501-63852251: Successfully fit background model for 11,746,535 bp. Use segment r for 0 bp 2025-01-31 10:00:22,101 DEBUG chr7:63852251-68769751: Successfully fit background model for 4,677,017 bp. Use segment r for 0 bp 2025-01-31 10:00:22,241 DEBUG chr6:74360751-82994251: Successfully fit background model for 7,801,249 bp. Use segment r for 0 bp 2025-01-31 10:00:22,299 DEBUG chr6:82994251-83454751: Successfully fit background model for 452,531 bp. Use segment r for 0 bp 2025-01-31 10:00:22,515 DEBUG chr6:83454751-85906751: Successfully fit background model for 2,266,144 bp. Use segment r for 0 bp 2025-01-31 10:00:22,538 DEBUG chr7:68769751-73506751: Successfully fit background model for 4,421,135 bp. Use segment r for 0 bp 2025-01-31 10:00:22,802 DEBUG chr7:73506751-76495251: Successfully fit background model for 2,743,929 bp. Use segment r for 0 bp 2025-01-31 10:00:22,823 DEBUG chr6:85906751-89280251: Successfully fit background model for 3,261,048 bp. Use segment r for 0 bp 2025-01-31 10:00:23,018 DEBUG chr6:89280251-91460251: Successfully fit background model for 2,005,486 bp. Use segment r for 0 bp 2025-01-31 10:00:23,044 DEBUG chr7:76495251-79234251: Successfully fit background model for 2,573,985 bp. Use segment r for 0 bp 2025-01-31 10:00:23,195 DEBUG chr7:79234251-80881751: Successfully fit background model for 1,607,170 bp. Use segment r for 0 bp 2025-01-31 10:00:23,579 DEBUG chr7:80881751-84812001: Successfully fit background model for 3,712,420 bp. Use segment r for 0 bp 2025-01-31 10:00:23,878 DEBUG chr7:84812001-88175001: Successfully fit background model for 2,967,340 bp. Use segment r for 0 bp 2025-01-31 10:00:24,118 DEBUG chr7:88175001-90745251: Successfully fit background model for 2,337,523 bp. Use segment r for 0 bp 2025-01-31 10:00:24,342 DEBUG chr6:91460251-104011251: Successfully fit background model for 11,866,030 bp. Use segment r for 0 bp 2025-01-31 10:00:24,355 DEBUG chr7:90745251-93437251: Successfully fit background model for 2,473,027 bp. Use segment r for 0 bp 2025-01-31 10:00:24,533 DEBUG chr7:93437251-95396001: Successfully fit background model for 1,756,874 bp. Use segment r for 0 bp 2025-01-31 10:00:24,565 DEBUG chr10:3101500-33034751: Successfully fit background model for 27,202,423 bp. Use segment r for 0 bp 2025-01-31 10:00:24,818 DEBUG chr7:95396001-98690751: Successfully fit background model for 3,125,272 bp. Use segment r for 0 bp 2025-01-31 10:00:25,017 DEBUG chr10:33034751-37833751: Successfully fit background model for 4,362,215 bp. Use segment r for 0 bp 2025-01-31 10:00:25,208 DEBUG chr7:98690751-103130251: Successfully fit background model for 4,272,149 bp. Use segment r for 0 bp 2025-01-31 10:00:25,220 DEBUG chr10:37833751-40114751: Successfully fit background model for 2,083,758 bp. Use segment r for 0 bp 2025-01-31 10:00:25,257 DEBUG chr6:104011251-112833751: Successfully fit background model for 7,985,173 bp. Use segment r for 0 bp 2025-01-31 10:00:25,343 DEBUG chr6:112833751-113602251: Successfully fit background model for 752,775 bp. Use segment r for 0 bp 2025-01-31 10:00:25,518 DEBUG chr10:40114751-43574751: Successfully fit background model for 3,321,060 bp. Use segment r for 0 bp 2025-01-31 10:00:25,855 DEBUG chr7:103130251-107960251: Successfully fit background model for 3,771,072 bp. Use segment r for 1,884 bp 2025-01-31 10:00:25,895 DEBUG chr10:43574751-47621001: Successfully fit background model for 3,703,968 bp. Use segment r for 0 bp 2025-01-31 10:00:26,102 DEBUG chr10:47621001-49941251: Successfully fit background model for 2,045,046 bp. Use segment r for 0 bp 2025-01-31 10:00:26,527 DEBUG chr6:113602251-124662251: Successfully fit background model for 9,894,778 bp. Use segment r for 0 bp 2025-01-31 10:00:26,594 DEBUG chr6:124662251-125188751: Successfully fit background model for 505,257 bp. Use segment r for 0 bp 2025-01-31 10:00:26,927 DEBUG chr10:49941251-58208251: Successfully fit background model for 7,045,403 bp. Use segment r for 0 bp 2025-01-31 10:00:26,969 DEBUG chr6:125188751-128847251: Successfully fit background model for 3,512,833 bp. Use segment r for 0 bp 2025-01-31 10:00:27,433 DEBUG chr10:58208251-64128751: Successfully fit background model for 5,659,280 bp. Use segment r for 0 bp 2025-01-31 10:00:27,612 DEBUG chr6:128847251-133496751: Successfully fit background model for 3,814,335 bp. Use segment r for 122 bp 2025-01-31 10:00:27,676 DEBUG chr10:64128751-65808751: Successfully fit background model for 1,463,101 bp. Use segment r for 77,471 bp 2025-01-31 10:00:27,747 DEBUG chr7:107960251-125391251: Successfully fit background model for 16,537,015 bp. Use segment r for 0 bp 2025-01-31 10:00:28,034 DEBUG chr7:125391251-128267751: Successfully fit background model for 2,778,007 bp. Use segment r for 0 bp 2025-01-31 10:00:28,734 DEBUG chr10:65808751-75493751: Successfully fit background model for 8,982,386 bp. Use segment r for 0 bp 2025-01-31 10:00:28,994 DEBUG chr10:75493751-78360251: Successfully fit background model for 2,771,784 bp. Use segment r for 0 bp 2025-01-31 10:00:29,121 DEBUG chr10:78360251-79645251: Successfully fit background model for 1,084,162 bp. Use segment r for 0 bp 2025-01-31 10:00:29,299 DEBUG chr10:79645251-81645751: Successfully fit background model for 1,966,231 bp. Use segment r for 0 bp 2025-01-31 10:00:29,429 DEBUG chr6:133496751-149736546: Successfully fit background model for 15,070,832 bp. Use segment r for 0 bp 2025-01-31 10:00:29,500 DEBUG chr7:128267751-140808751: Successfully fit background model for 11,975,243 bp. Use segment r for 0 bp 2025-01-31 10:00:29,590 DEBUG chr7:140808751-141537251: Successfully fit background model for 712,207 bp. Use segment r for 0 bp 2025-01-31 10:00:30,002 DEBUG chr7:141537251-145441459: Successfully fit background model for 3,633,251 bp. Use segment r for 0 bp 2025-01-31 10:00:31,557 DEBUG chr10:81645751-100861751: Successfully fit background model for 17,653,916 bp. Use segment r for 0 bp 2025-01-31 10:00:32,153 DEBUG chr10:100861751-106836751: Successfully fit background model for 5,369,296 bp. Use segment r for 0 bp 2025-01-31 10:00:32,817 DEBUG chr10:106836751-113830751: Successfully fit background model for 6,517,251 bp. Use segment r for 0 bp 2025-01-31 10:00:33,809 DEBUG chr10:113830751-124219751: Successfully fit background model for 9,747,668 bp. Use segment r for 0 bp 2025-01-31 10:00:34,001 DEBUG chr8:3070000-4680251: Successfully fit background model for 1,414,288 bp. Use segment r for 0 bp 2025-01-31 10:00:34,048 DEBUG chr10:124219751-126900251: Successfully fit background model for 2,489,254 bp. Use segment r for 0 bp 2025-01-31 10:00:34,306 DEBUG chr10:126900251-129381251: Successfully fit background model for 2,331,691 bp. Use segment r for 0 bp 2025-01-31 10:00:34,385 DEBUG chr8:4680251-7453751: Successfully fit background model for 2,433,338 bp. Use segment r for 0 bp 2025-01-31 10:00:34,432 DEBUG chr10:129381251-130694993: Successfully fit background model for 1,017,889 bp. Use segment r for 0 bp 2025-01-31 10:00:34,561 DEBUG chr14:3006500-5131001: Successfully fit background model for 70,474 bp. Use segment r for 4,297 bp 2025-01-31 10:00:34,659 DEBUG chr8:7453751-9641251: Successfully fit background model for 2,054,594 bp. Use segment r for 0 bp 2025-01-31 10:00:36,788 DEBUG chr14:5838000-18233751: Successfully fit background model for 9,819,529 bp. Use segment r for 1,042 bp 2025-01-31 10:00:36,814 DEBUG chr14:18233751-18285251: Successfully fit background model for 46,465 bp. Use segment r for 0 bp 2025-01-31 10:00:36,965 DEBUG chr14:18285251-19699751: Successfully fit background model for 1,080,721 bp. Use segment r for 0 bp 2025-01-31 10:00:37,158 DEBUG chr14:19699751-21712251: Successfully fit background model for 1,946,417 bp. Use segment r for 0 bp 2025-01-31 10:00:37,958 DEBUG chr14:21712251-29887751: Successfully fit background model for 7,395,962 bp. Use segment r for 0 bp 2025-01-31 10:00:38,426 DEBUG chr14:29887751-35144751: Successfully fit background model for 5,082,775 bp. Use segment r for 0 bp 2025-01-31 10:00:38,615 DEBUG chr14:35144751-37180751: Successfully fit background model for 1,855,434 bp. Use segment r for 0 bp 2025-01-31 10:00:38,783 DEBUG chr8:9641251-26971751: Successfully fit background model for 14,778,869 bp. Use segment r for 40,286 bp 2025-01-31 10:00:38,830 DEBUG chr8:26971751-27169751: Successfully fit background model for 194,240 bp. Use segment r for 0 bp 2025-01-31 10:00:38,941 DEBUG chr14:37180751-40885751: Successfully fit background model for 3,301,287 bp. Use segment r for 0 bp 2025-01-31 10:00:39,344 DEBUG chr8:27169751-32529251: Successfully fit background model for 4,829,289 bp. Use segment r for 0 bp 2025-01-31 10:00:39,770 DEBUG chr8:32529251-37470501: Successfully fit background model for 4,635,614 bp. Use segment r for 0 bp 2025-01-31 10:00:40,320 DEBUG chr8:37470501-43727751: Successfully fit background model for 5,524,158 bp. Use segment r for 0 bp 2025-01-31 10:00:40,581 DEBUG chr14:40885751-50771251: Successfully fit background model for 6,621,835 bp. Use segment r for 2,650 bp 2025-01-31 10:00:40,693 DEBUG chr14:50771251-51883251: Successfully fit background model for 915,742 bp. Use segment r for 0 bp 2025-01-31 10:00:40,737 DEBUG chr14:51883251-52317251: Successfully fit background model for 419,751 bp. Use segment r for 0 bp 2025-01-31 10:00:40,786 DEBUG chr8:43727751-48975251: Successfully fit background model for 4,948,794 bp. Use segment r for 0 bp 2025-01-31 10:00:40,938 DEBUG chr14:52317251-54147751: Successfully fit background model for 1,036,086 bp. Use segment r for 0 bp 2025-01-31 10:00:41,067 DEBUG chr14:54147751-55555251: Successfully fit background model for 1,340,360 bp. Use segment r for 0 bp 2025-01-31 10:00:41,156 DEBUG chr8:48975251-53145251: Successfully fit background model for 3,779,884 bp. Use segment r for 0 bp 2025-01-31 10:00:42,984 DEBUG chr14:55555251-71016251: Successfully fit background model for 14,293,861 bp. Use segment r for 0 bp 2025-01-31 10:00:43,273 DEBUG chr8:53145251-66045251: Successfully fit background model for 11,246,087 bp. Use segment r for 0 bp 2025-01-31 10:00:43,286 DEBUG chr14:71016251-74242751: Successfully fit background model for 2,952,889 bp. Use segment r for 0 bp 2025-01-31 10:00:43,951 DEBUG chr14:74242751-79889751: Successfully fit background model for 5,364,761 bp. Use segment r for 0 bp 2025-01-31 10:00:44,389 DEBUG chr8:66045251-69789251: Successfully fit background model for 3,285,959 bp. Use segment r for 11,978 bp 2025-01-31 10:00:44,464 DEBUG chr8:69789251-70407251: Successfully fit background model for 609,379 bp. Use segment r for 0 bp 2025-01-31 10:00:44,513 DEBUG chr8:70407251-70923251: Successfully fit background model for 506,951 bp. Use segment r for 0 bp 2025-01-31 10:00:44,742 DEBUG chr14:79889751-85673251: Successfully fit background model for 5,185,220 bp. Use segment r for 0 bp 2025-01-31 10:00:44,828 DEBUG chr8:70923251-72503251: Successfully fit background model for 1,332,398 bp. Use segment r for 0 bp 2025-01-31 10:00:45,147 DEBUG chr14:85673251-89449751: Successfully fit background model for 3,413,511 bp. Use segment r for 0 bp 2025-01-31 10:00:46,450 DEBUG chr14:89449751-97951751: Successfully fit background model for 7,741,406 bp. Use segment r for 0 bp 2025-01-31 10:00:47,318 DEBUG chr14:97951751-106699251: Successfully fit background model for 8,057,747 bp. Use segment r for 0 bp 2025-01-31 10:00:47,366 DEBUG chr8:72503251-83588751: Successfully fit background model for 10,063,259 bp. Use segment r for 0 bp 2025-01-31 10:00:47,581 DEBUG chr8:83588751-84637251: Successfully fit background model for 1,028,381 bp. Use segment r for 0 bp 2025-01-31 10:00:47,688 DEBUG chr8:84637251-85088751: Successfully fit background model for 444,476 bp. Use segment r for 0 bp 2025-01-31 10:00:47,957 DEBUG chr14:106699251-113843751: Successfully fit background model for 6,445,184 bp. Use segment r for 0 bp 2025-01-31 10:00:49,058 DEBUG chr14:113843751-124902244: Successfully fit background model for 10,011,971 bp. Use segment r for 0 bp 2025-01-31 10:00:49,706 DEBUG chr8:85088751-94061751: Successfully fit background model for 8,567,538 bp. Use segment r for 0 bp 2025-01-31 10:00:50,182 DEBUG chr8:94061751-96665751: Successfully fit background model for 2,466,320 bp. Use segment r for 0 bp 2025-01-31 10:00:51,383 DEBUG chr8:96665751-102986751: Successfully fit background model for 5,776,702 bp. Use segment r for 0 bp 2025-01-31 10:00:51,740 DEBUG chr8:102986751-105251251: Successfully fit background model for 2,082,255 bp. Use segment r for 0 bp 2025-01-31 10:00:51,939 DEBUG chr8:105251251-107396501: Successfully fit background model for 2,076,809 bp. Use segment r for 0 bp 2025-01-31 10:00:52,219 DEBUG chr8:107396501-110720751: Successfully fit background model for 3,230,538 bp. Use segment r for 0 bp 2025-01-31 10:00:52,323 DEBUG chr8:110720751-111851251: Successfully fit background model for 1,099,887 bp. Use segment r for 0 bp 2025-01-31 10:00:53,006 DEBUG chr8:111851251-116865751: Successfully fit background model for 4,586,456 bp. Use segment r for 243,918 bp 2025-01-31 10:00:53,232 DEBUG chr8:116865751-119351251: Successfully fit background model for 2,412,837 bp. Use segment r for 0 bp 2025-01-31 10:00:53,628 DEBUG chr8:119351251-123990251: Successfully fit background model for 4,437,893 bp. Use segment r for 0 bp 2025-01-31 10:00:53,816 DEBUG chr9:3002500-13293751: Successfully fit background model for 9,009,384 bp. Use segment r for 0 bp 2025-01-31 10:00:53,895 DEBUG chr8:123990251-126900251: Successfully fit background model for 2,816,997 bp. Use segment r for 0 bp 2025-01-31 10:00:54,011 DEBUG chr9:13293751-15463751: Successfully fit background model for 1,983,285 bp. Use segment r for 0 bp 2025-01-31 10:00:54,105 DEBUG chr8:126900251-129401213: Successfully fit background model for 2,210,055 bp. Use segment r for 0 bp 2025-01-31 10:00:54,474 DEBUG chr9:15463751-20491751: Successfully fit background model for 4,421,850 bp. Use segment r for 0 bp 2025-01-31 10:00:54,618 DEBUG chr9:20491751-22041751: Successfully fit background model for 1,496,020 bp. Use segment r for 0 bp 2025-01-31 10:00:56,323 DEBUG chr9:22041751-37851001: Successfully fit background model for 14,761,974 bp. Use segment r for 0 bp 2025-01-31 10:00:56,508 DEBUG chr9:37851001-39771251: Successfully fit background model for 1,721,532 bp. Use segment r for 0 bp 2025-01-31 10:00:56,871 DEBUG chr9:39771251-44046751: Successfully fit background model for 4,124,489 bp. Use segment r for 0 bp 2025-01-31 10:00:56,918 DEBUG chr9:44046751-44452251: Successfully fit background model for 383,216 bp. Use segment r for 0 bp 2025-01-31 10:00:58,213 DEBUG chr9:44452251-56843251: Successfully fit background model for 11,844,223 bp. Use segment r for 0 bp 2025-01-31 10:00:58,484 DEBUG chr9:56843251-59752251: Successfully fit background model for 2,825,334 bp. Use segment r for 0 bp 2025-01-31 10:00:58,625 DEBUG chr9:59752251-61271751: Successfully fit background model for 1,478,034 bp. Use segment r for 0 bp 2025-01-31 10:00:59,222 DEBUG chr9:61271751-66832251: Successfully fit background model for 5,417,325 bp. Use segment r for 0 bp 2025-01-31 10:01:00,820 DEBUG chr9:66832251-80970751: Successfully fit background model for 13,271,364 bp. Use segment r for 0 bp 2025-01-31 10:01:01,699 DEBUG chr9:80970751-90110751: Successfully fit background model for 7,924,311 bp. Use segment r for 0 bp 2025-01-31 10:01:01,755 DEBUG chr9:90110751-90544251: Successfully fit background model for 385,802 bp. Use segment r for 0 bp 2025-01-31 10:01:02,059 DEBUG chr9:90544251-93669751: Successfully fit background model for 2,770,415 bp. Use segment r for 0 bp 2025-01-31 10:01:03,352 DEBUG chr9:93669751-106138251: Successfully fit background model for 11,879,652 bp. Use segment r for 0 bp 2025-01-31 10:01:03,607 DEBUG chr9:106138251-108914251: Successfully fit background model for 2,618,569 bp. Use segment r for 0 bp 2025-01-31 10:01:03,774 DEBUG chr9:108914251-110671251: Successfully fit background model for 1,559,291 bp. Use segment r for 0 bp 2025-01-31 10:01:04,697 DEBUG chr9:110671251-119320251: Successfully fit background model for 8,172,555 bp. Use segment r for 0 bp 2025-01-31 10:01:05,181 DEBUG chr9:119320251-124595110: Successfully fit background model for 4,732,153 bp. Use segment r for 0 bp 2025-01-31 10:02:02,747 DEBUG chr11:3100500-3203251: Successfully fit background model for 75,714 bp. Use segment r for 0 bp 2025-01-31 10:02:03,119 DEBUG chr11:3203251-6741251: Successfully fit background model for 3,403,123 bp. Use segment r for 0 bp 2025-01-31 10:02:03,145 DEBUG chr13:3000500-4699501: Successfully fit background model for 1,442,965 bp. Use segment r for 0 bp 2025-01-31 10:02:03,577 DEBUG chr13:4699501-8743751: Successfully fit background model for 3,586,184 bp. Use segment r for 0 bp 2025-01-31 10:02:03,951 DEBUG chr11:6741251-12679751: Successfully fit background model for 5,331,784 bp. Use segment r for 0 bp 2025-01-31 10:02:04,600 DEBUG chr11:12679751-18886251: Successfully fit background model for 5,536,761 bp. Use segment r for 0 bp 2025-01-31 10:02:05,120 DEBUG chr11:18886251-24484251: Successfully fit background model for 5,298,017 bp. Use segment r for 0 bp 2025-01-31 10:02:05,457 DEBUG chr13:8743751-21158251: Successfully fit background model for 10,895,533 bp. Use segment r for 0 bp 2025-01-31 10:02:05,508 DEBUG chr13:21158251-21280251: Successfully fit background model for 117,989 bp. Use segment r for 0 bp 2025-01-31 10:02:05,545 DEBUG chr11:24484251-28697251: Successfully fit background model for 3,768,657 bp. Use segment r for 0 bp 2025-01-31 10:02:05,570 DEBUG chr13:21280251-21707751: Successfully fit background model for 393,988 bp. Use segment r for 0 bp 2025-01-31 10:02:05,606 DEBUG chr13:21707751-22052251: Successfully fit background model for 288,888 bp. Use segment r for 0 bp 2025-01-31 10:02:05,733 DEBUG chr13:22052251-23284751: Successfully fit background model for 925,983 bp. Use segment r for 0 bp 2025-01-31 10:02:05,783 DEBUG chr13:23284751-23766251: Successfully fit background model for 446,443 bp. Use segment r for 0 bp 2025-01-31 10:02:05,870 DEBUG chr13:23766251-24687251: Successfully fit background model for 884,001 bp. Use segment r for 0 bp 2025-01-31 10:02:05,996 DEBUG chr13:24687251-26022251: Successfully fit background model for 1,237,129 bp. Use segment r for 0 bp 2025-01-31 10:02:06,126 DEBUG chr13:26022251-27448251: Successfully fit background model for 1,257,071 bp. Use segment r for 0 bp 2025-01-31 10:02:06,426 DEBUG chr11:28697251-36597501: Successfully fit background model for 7,356,090 bp. Use segment r for 0 bp 2025-01-31 10:02:07,081 DEBUG chr11:36597501-42873751: Successfully fit background model for 5,809,590 bp. Use segment r for 0 bp 2025-01-31 10:02:07,883 DEBUG chr11:42873751-48771251: Successfully fit background model for 5,478,168 bp. Use segment r for 0 bp 2025-01-31 10:02:07,904 DEBUG chr11:48771251-48875751: Successfully fit background model for 101,529 bp. Use segment r for 0 bp 2025-01-31 10:02:08,220 DEBUG chr12:3000500-5415251: Successfully fit background model for 2,220,998 bp. Use segment r for 0 bp 2025-01-31 10:02:08,729 DEBUG chr15:3050500-5083751: Successfully fit background model for 1,730,031 bp. Use segment r for 0 bp 2025-01-31 10:02:09,130 DEBUG chr15:5083751-9015251: Successfully fit background model for 3,610,728 bp. Use segment r for 0 bp 2025-01-31 10:02:09,150 DEBUG chr15:9015251-9095251: Successfully fit background model for 39,650 bp. Use segment r for 0 bp 2025-01-31 10:02:09,343 DEBUG chr11:48875751-58902751: Successfully fit background model for 9,414,377 bp. Use segment r for 0 bp 2025-01-31 10:02:09,511 DEBUG chr11:58902751-60694001: Successfully fit background model for 1,660,746 bp. Use segment r for 0 bp 2025-01-31 10:02:09,643 DEBUG chr15:9095251-13530751: Successfully fit background model for 4,134,347 bp. Use segment r for 0 bp 2025-01-31 10:02:10,385 DEBUG chr11:60694001-68965751: Successfully fit background model for 7,998,444 bp. Use segment r for 0 bp 2025-01-31 10:02:10,414 DEBUG chr11:68965751-69127251: Successfully fit background model for 159,068 bp. Use segment r for 0 bp 2025-01-31 10:02:10,567 DEBUG chr11:69127251-70688751: Successfully fit background model for 1,524,292 bp. Use segment r for 0 bp 2025-01-31 10:02:10,619 DEBUG chr13:27448251-54439751: Successfully fit background model for 25,042,422 bp. Use segment r for 0 bp 2025-01-31 10:02:10,765 DEBUG chr13:54439751-55606751: Successfully fit background model for 1,125,160 bp. Use segment r for 0 bp 2025-01-31 10:02:10,969 DEBUG chr11:70688751-74828751: Successfully fit background model for 3,803,550 bp. Use segment r for 0 bp 2025-01-31 10:02:10,985 DEBUG chr11:74828751-74899251: Successfully fit background model for 62,792 bp. Use segment r for 0 bp 2025-01-31 10:02:11,003 DEBUG chr15:13530751-25731251: Successfully fit background model for 10,899,573 bp. Use segment r for 0 bp 2025-01-31 10:02:11,014 DEBUG chr13:55606751-58123251: Successfully fit background model for 2,459,969 bp. Use segment r for 0 bp 2025-01-31 10:02:11,159 DEBUG chr13:58123251-59713501: Successfully fit background model for 1,538,728 bp. Use segment r for 0 bp 2025-01-31 10:02:11,167 DEBUG chr15:25731251-27302251: Successfully fit background model for 1,459,773 bp. Use segment r for 0 bp 2025-01-31 10:02:11,218 DEBUG chr15:27302251-27725751: Successfully fit background model for 403,041 bp. Use segment r for 0 bp 2025-01-31 10:02:11,438 DEBUG chr11:74899251-79603251: Successfully fit background model for 4,578,287 bp. Use segment r for 0 bp 2025-01-31 10:02:11,529 DEBUG chr15:27725751-31166751: Successfully fit background model for 3,128,633 bp. Use segment r for 0 bp 2025-01-31 10:02:11,692 DEBUG chr13:59713501-63538251: Successfully fit background model for 3,155,660 bp. Use segment r for 53,582 bp 2025-01-31 10:02:11,768 DEBUG chr13:63538251-64242751: Successfully fit background model for 689,995 bp. Use segment r for 0 bp 2025-01-31 10:02:11,861 DEBUG chr12:5415251-24555251: Successfully fit background model for 13,683,762 bp. Use segment r for 9,129 bp 2025-01-31 10:02:11,887 DEBUG chr11:79603251-84691251: Successfully fit background model for 4,868,609 bp. Use segment r for 0 bp 2025-01-31 10:02:11,926 DEBUG chr12:24555251-24926751: Successfully fit background model for 356,421 bp. Use segment r for 0 bp 2025-01-31 10:02:12,009 DEBUG chr15:31166751-36116251: Successfully fit background model for 4,460,159 bp. Use segment r for 0 bp 2025-01-31 10:02:12,237 DEBUG chr15:36116251-38535751: Successfully fit background model for 2,304,408 bp. Use segment r for 0 bp 2025-01-31 10:02:12,313 DEBUG chr11:84691251-89545751: Successfully fit background model for 4,705,124 bp. Use segment r for 0 bp 2025-01-31 10:02:12,711 DEBUG chr11:89545751-94127501: Successfully fit background model for 4,276,336 bp. Use segment r for 0 bp 2025-01-31 10:02:12,879 DEBUG chr15:38535751-45166251: Successfully fit background model for 5,956,936 bp. Use segment r for 0 bp 2025-01-31 10:02:13,236 DEBUG chr12:24926751-36937251: Successfully fit background model for 11,299,600 bp. Use segment r for 0 bp 2025-01-31 10:02:13,288 DEBUG chr15:45166251-49753001: Successfully fit background model for 4,108,775 bp. Use segment r for 0 bp 2025-01-31 10:02:13,305 DEBUG chr13:64242751-73247251: Successfully fit background model for 6,909,686 bp. Use segment r for 5,185 bp 2025-01-31 10:02:13,382 DEBUG chr13:73247251-73935751: Successfully fit background model for 676,130 bp. Use segment r for 0 bp 2025-01-31 10:02:13,968 DEBUG chr13:73935751-78161251: Successfully fit background model for 3,731,600 bp. Use segment r for 32,746 bp 2025-01-31 10:02:13,983 DEBUG chr13:78161251-78212251: Successfully fit background model for 50,897 bp. Use segment r for 0 bp 2025-01-31 10:02:14,024 DEBUG chr11:94127501-106980251: Successfully fit background model for 12,438,752 bp. Use segment r for 0 bp 2025-01-31 10:02:14,066 DEBUG chr15:49753001-57833251: Successfully fit background model for 7,377,984 bp. Use segment r for 0 bp 2025-01-31 10:02:14,185 DEBUG chr15:57833251-59009751: Successfully fit background model for 1,142,030 bp. Use segment r for 0 bp 2025-01-31 10:02:14,235 DEBUG chr13:78212251-80880751: Successfully fit background model for 2,396,277 bp. Use segment r for 0 bp 2025-01-31 10:02:14,247 DEBUG chr13:80880751-80933001: Successfully fit background model for 52,092 bp. Use segment r for 0 bp 2025-01-31 10:02:14,320 DEBUG chr13:80933001-81625501: Successfully fit background model for 650,792 bp. Use segment r for 0 bp 2025-01-31 10:02:14,338 DEBUG chr13:81625501-81784251: Successfully fit background model for 148,907 bp. Use segment r for 0 bp 2025-01-31 10:02:14,357 DEBUG chr11:106980251-110654751: Successfully fit background model for 3,546,700 bp. Use segment r for 0 bp 2025-01-31 10:02:14,522 DEBUG chr13:81784251-83695751: Successfully fit background model for 1,754,261 bp. Use segment r for 0 bp 2025-01-31 10:02:14,534 DEBUG chr13:83695751-83761001: Successfully fit background model for 62,891 bp. Use segment r for 0 bp 2025-01-31 10:02:14,813 DEBUG chr11:110654751-115167751: Successfully fit background model for 4,334,290 bp. Use segment r for 0 bp 2025-01-31 10:02:15,218 DEBUG chr13:83761001-90922751: Successfully fit background model for 6,399,169 bp. Use segment r for 0 bp 2025-01-31 10:02:15,312 DEBUG chr15:59009751-69363751: Successfully fit background model for 9,469,523 bp. Use segment r for 0 bp 2025-01-31 10:02:15,450 DEBUG chr15:69363751-70701751: Successfully fit background model for 1,221,904 bp. Use segment r for 0 bp 2025-01-31 10:02:15,453 DEBUG chr11:115167751-122082543: Successfully fit background model for 6,599,205 bp. Use segment r for 0 bp 2025-01-31 10:02:15,603 DEBUG chr12:36937251-51490501: Successfully fit background model for 12,971,031 bp. Use segment r for 132,721 bp 2025-01-31 10:02:15,743 DEBUG chr13:90922751-96911251: Successfully fit background model for 5,640,446 bp. Use segment r for 0 bp 2025-01-31 10:02:15,936 DEBUG chr15:70701751-75675751: Successfully fit background model for 4,648,667 bp. Use segment r for 0 bp 2025-01-31 10:02:16,042 DEBUG chr15:75675751-76725751: Successfully fit background model for 1,022,883 bp. Use segment r for 0 bp 2025-01-31 10:02:16,075 DEBUG chr13:96911251-100678251: Successfully fit background model for 3,532,791 bp. Use segment r for 0 bp 2025-01-31 10:02:16,453 DEBUG chr12:51490501-59873251: Successfully fit background model for 7,578,132 bp. Use segment r for 0 bp 2025-01-31 10:02:16,633 DEBUG chr15:76725751-82379251: Successfully fit background model for 5,393,595 bp. Use segment r for 0 bp 2025-01-31 10:02:16,935 DEBUG chr15:82379251-85798751: Successfully fit background model for 3,259,145 bp. Use segment r for 0 bp 2025-01-31 10:02:17,209 DEBUG chr15:85798751-88708251: Successfully fit background model for 2,828,961 bp. Use segment r for 0 bp 2025-01-31 10:02:17,269 DEBUG chr15:88708251-89293251: Successfully fit background model for 559,172 bp. Use segment r for 0 bp 2025-01-31 10:02:17,547 DEBUG chr12:59873251-69146751: Successfully fit background model for 8,268,932 bp. Use segment r for 0 bp 2025-01-31 10:02:17,713 DEBUG chr13:100678251-111681751: Successfully fit background model for 10,229,906 bp. Use segment r for 0 bp 2025-01-31 10:02:17,797 DEBUG chr12:69146751-71852751: Successfully fit background model for 2,594,375 bp. Use segment r for 0 bp 2025-01-31 10:02:17,824 DEBUG chr13:111681751-112745751: Successfully fit background model for 1,027,572 bp. Use segment r for 0 bp 2025-01-31 10:02:18,088 DEBUG chr13:112745751-115334751: Successfully fit background model for 2,454,789 bp. Use segment r for 0 bp 2025-01-31 10:02:18,187 DEBUG chr12:71852751-76176751: Successfully fit background model for 4,108,643 bp. Use segment r for 0 bp 2025-01-31 10:02:18,244 DEBUG chr12:76176751-76699751: Successfully fit background model for 501,942 bp. Use segment r for 0 bp 2025-01-31 10:02:18,430 DEBUG chr12:76699751-78860251: Successfully fit background model for 1,990,359 bp. Use segment r for 0 bp 2025-01-31 10:02:18,492 DEBUG chr13:115334751-119426251: Successfully fit background model for 3,737,603 bp. Use segment r for 0 bp 2025-01-31 10:02:18,550 DEBUG chr15:89293251-98504251: Successfully fit background model for 8,700,132 bp. Use segment r for 0 bp 2025-01-31 10:02:18,640 DEBUG chr13:119426251-120421639: Successfully fit background model for 403,237 bp. Use segment r for 209 bp 2025-01-31 10:02:18,695 DEBUG chr15:98504251-99929251: Successfully fit background model for 1,385,144 bp. Use segment r for 0 bp 2025-01-31 10:02:19,028 DEBUG chr15:99929251-103235751: Successfully fit background model for 3,196,235 bp. Use segment r for 0 bp 2025-01-31 10:02:19,051 DEBUG chr15:103235751-103372251: Successfully fit background model for 133,129 bp. Use segment r for 0 bp 2025-01-31 10:02:19,124 DEBUG chr15:103372251-104043685: Successfully fit background model for 424,654 bp. Use segment r for 0 bp 2025-01-31 10:02:19,539 DEBUG chr12:78860251-87265251: Successfully fit background model for 8,064,153 bp. Use segment r for 0 bp 2025-01-31 10:02:20,076 DEBUG chr12:87265251-92480251: Successfully fit background model for 4,442,258 bp. Use segment r for 0 bp 2025-01-31 10:02:20,487 DEBUG chr12:92480251-96995751: Successfully fit background model for 4,056,471 bp. Use segment r for 0 bp 2025-01-31 10:02:20,708 DEBUG chr12:96995751-99213751: Successfully fit background model for 2,049,034 bp. Use segment r for 0 bp 2025-01-31 10:02:21,295 DEBUG chr12:99213751-105000751: Successfully fit background model for 5,421,042 bp. Use segment r for 0 bp 2025-01-31 10:02:21,315 DEBUG chr12:105000751-105053251: Successfully fit background model for 51,651 bp. Use segment r for 0 bp 2025-01-31 10:02:21,872 DEBUG chr12:105053251-110372251: Successfully fit background model for 5,139,462 bp. Use segment r for 0 bp 2025-01-31 10:02:22,115 DEBUG chr12:110372251-113050251: Successfully fit background model for 2,605,558 bp. Use segment r for 0 bp 2025-01-31 10:02:22,874 DEBUG chr12:113050251-120129022: Successfully fit background model for 6,142,364 bp. Use segment r for 0 bp 2025-01-31 10:02:24,105 DEBUG chr16:3104500-5608251: Successfully fit background model for 2,070,325 bp. Use segment r for 0 bp 2025-01-31 10:02:24,369 DEBUG chr16:5608251-8405251: Successfully fit background model for 2,659,784 bp. Use segment r for 0 bp 2025-01-31 10:02:25,010 DEBUG chr16:8405251-14480751: Successfully fit background model for 5,749,460 bp. Use segment r for 0 bp 2025-01-31 10:02:25,257 DEBUG chr16:14480751-17067251: Successfully fit background model for 2,261,314 bp. Use segment r for 0 bp 2025-01-31 10:02:25,469 DEBUG chr16:17067251-18976251: Successfully fit background model for 1,842,673 bp. Use segment r for 0 bp 2025-01-31 10:02:25,540 DEBUG chr16:18976251-19747251: Successfully fit background model for 604,552 bp. Use segment r for 0 bp 2025-01-31 10:02:25,888 DEBUG chr16:19747251-23371751: Successfully fit background model for 3,400,074 bp. Use segment r for 0 bp 2025-01-31 10:02:26,316 DEBUG chr16:23371751-28032501: Successfully fit background model for 4,371,720 bp. Use segment r for 0 bp 2025-01-31 10:02:26,419 DEBUG chr17:3000000-16136251: Successfully fit background model for 11,076,161 bp. Use segment r for 0 bp 2025-01-31 10:02:26,648 DEBUG chr16:28032501-31874751: Successfully fit background model for 3,652,096 bp. Use segment r for 0 bp 2025-01-31 10:02:27,259 DEBUG chr17:16136251-23531751: Successfully fit background model for 6,086,885 bp. Use segment r for 0 bp 2025-01-31 10:02:27,354 DEBUG chr16:31874751-39519001: Successfully fit background model for 7,287,977 bp. Use segment r for 0 bp 2025-01-31 10:02:27,911 DEBUG chr17:23531751-29624751: Successfully fit background model for 5,900,666 bp. Use segment r for 0 bp 2025-01-31 10:02:28,347 DEBUG chr17:29624751-33779251: Successfully fit background model for 3,881,637 bp. Use segment r for 0 bp 2025-01-31 10:02:28,388 DEBUG chr17:33779251-34143251: Successfully fit background model for 345,577 bp. Use segment r for 0 bp 2025-01-31 10:02:28,456 DEBUG chr17:34143251-34586251: Successfully fit background model for 410,083 bp. Use segment r for 0 bp 2025-01-31 10:02:28,520 DEBUG chr16:39519001-49765251: Successfully fit background model for 9,384,226 bp. Use segment r for 0 bp 2025-01-31 10:02:28,677 DEBUG chr17:34586251-36319251: Successfully fit background model for 1,543,010 bp. Use segment r for 0 bp 2025-01-31 10:02:28,698 DEBUG chr16:49765251-51146251: Successfully fit background model for 1,303,050 bp. Use segment r for 0 bp 2025-01-31 10:02:29,269 DEBUG chr16:51146251-55820751: Successfully fit background model for 4,177,059 bp. Use segment r for 0 bp 2025-01-31 10:02:29,681 DEBUG chr16:55820751-59860751: Successfully fit background model for 3,599,426 bp. Use segment r for 0 bp 2025-01-31 10:02:29,941 DEBUG chr16:59860751-62348501: Successfully fit background model for 2,191,096 bp. Use segment r for 0 bp 2025-01-31 10:02:29,979 DEBUG chr17:36319251-45454251: Successfully fit background model for 8,091,405 bp. Use segment r for 0 bp 2025-01-31 10:02:30,554 DEBUG chr17:45454251-48853751: Successfully fit background model for 3,295,191 bp. Use segment r for 0 bp 2025-01-31 10:02:31,595 DEBUG chr17:48853751-55944251: Successfully fit background model for 6,455,508 bp. Use segment r for 0 bp 2025-01-31 10:02:31,744 DEBUG chr17:55944251-57462751: Successfully fit background model for 1,458,228 bp. Use segment r for 0 bp 2025-01-31 10:02:31,998 DEBUG chr17:57462751-60102251: Successfully fit background model for 2,353,877 bp. Use segment r for 0 bp 2025-01-31 10:02:33,852 DEBUG chr17:60102251-75984751: Successfully fit background model for 14,862,431 bp. Use segment r for 0 bp 2025-01-31 10:02:34,005 DEBUG chr17:75984751-77515751: Successfully fit background model for 1,406,419 bp. Use segment r for 0 bp 2025-01-31 10:02:34,275 DEBUG chr16:62348501-87431751: Successfully fit background model for 22,787,503 bp. Use segment r for 0 bp 2025-01-31 10:02:34,772 DEBUG chr16:87431751-89880251: Successfully fit background model for 2,289,946 bp. Use segment r for 0 bp 2025-01-31 10:02:35,315 DEBUG chr16:89880251-94471751: Successfully fit background model for 4,451,154 bp. Use segment r for 0 bp 2025-01-31 10:02:35,519 DEBUG chr17:77515751-89391001: Successfully fit background model for 11,273,590 bp. Use segment r for 0 bp 2025-01-31 10:02:35,793 DEBUG chr16:94471751-98207768: Successfully fit background model for 3,477,002 bp. Use segment r for 0 bp 2025-01-31 10:02:36,022 DEBUG chr17:89391001-94987271: Successfully fit background model for 4,963,228 bp. Use segment r for 0 bp 2025-01-31 10:03:27,342 DEBUG chr18:3000500-17428251: Successfully fit background model for 13,113,001 bp. Use segment r for 0 bp 2025-01-31 10:03:27,500 DEBUG chr18:17428251-18995251: Successfully fit background model for 1,376,533 bp. Use segment r for 0 bp 2025-01-31 10:03:28,554 DEBUG chr18:18995251-28630751: Successfully fit background model for 8,867,521 bp. Use segment r for 0 bp 2025-01-31 10:03:28,823 DEBUG chr18:28630751-31609251: Successfully fit background model for 2,766,140 bp. Use segment r for 0 bp 2025-01-31 10:03:29,052 DEBUG chr18:31609251-34205251: Successfully fit background model for 2,398,205 bp. Use segment r for 0 bp 2025-01-31 10:03:29,284 DEBUG chr18:34205251-36808251: Successfully fit background model for 2,542,408 bp. Use segment r for 0 bp 2025-01-31 10:03:29,377 DEBUG chr18:36808251-37805751: Successfully fit background model for 866,742 bp. Use segment r for 0 bp 2025-01-31 10:03:29,426 DEBUG chr18:37805751-38256751: Successfully fit background model for 444,684 bp. Use segment r for 0 bp 2025-01-31 10:03:31,950 DEBUG chr18:38256751-60489751: Successfully fit background model for 20,605,591 bp. Use segment r for 0 bp 2025-01-31 10:03:32,079 DEBUG chr18:60489751-61555001: Successfully fit background model for 1,045,834 bp. Use segment r for 0 bp 2025-01-31 10:03:32,623 DEBUG chr18:61555001-67196751: Successfully fit background model for 5,390,603 bp. Use segment r for 0 bp 2025-01-31 10:03:32,676 DEBUG chr18:67196751-67653751: Successfully fit background model for 448,888 bp. Use segment r for 0 bp 2025-01-31 10:03:33,020 DEBUG chr18:67653751-71622751: Successfully fit background model for 3,716,892 bp. Use segment r for 0 bp 2025-01-31 10:03:33,200 DEBUG chr18:71622751-73700251: Successfully fit background model for 1,906,507 bp. Use segment r for 0 bp 2025-01-31 10:03:33,619 DEBUG chr18:73700251-78119751: Successfully fit background model for 4,158,292 bp. Use segment r for 0 bp 2025-01-31 10:03:34,263 DEBUG chr18:78119751-84846751: Successfully fit background model for 6,348,797 bp. Use segment r for 0 bp 2025-01-31 10:03:34,327 DEBUG chr19:3080000-7619751: Successfully fit background model for 4,235,514 bp. Use segment r for 0 bp 2025-01-31 10:03:34,395 DEBUG chr19:7619751-8240751: Successfully fit background model for 465,320 bp. Use segment r for 0 bp 2025-01-31 10:03:34,672 DEBUG chr19:8240751-10993751: Successfully fit background model for 2,309,915 bp. Use segment r for 0 bp 2025-01-31 10:03:34,732 DEBUG chr19:10993751-11566751: Successfully fit background model for 506,708 bp. Use segment r for 0 bp 2025-01-31 10:03:34,781 DEBUG chr19:11566751-12019751: Successfully fit background model for 422,655 bp. Use segment r for 0 bp 2025-01-31 10:03:34,843 DEBUG chr18:84846751-90702639: Successfully fit background model for 4,983,547 bp. Use segment r for 0 bp 2025-01-31 10:03:35,115 DEBUG chr19:12019751-15511751: Successfully fit background model for 3,162,274 bp. Use segment r for 0 bp 2025-01-31 10:03:35,291 DEBUG chr19:15511751-17451251: Successfully fit background model for 1,858,058 bp. Use segment r for 0 bp 2025-01-31 10:03:35,819 DEBUG chr19:17451251-22829751: Successfully fit background model for 5,009,240 bp. Use segment r for 0 bp 2025-01-31 10:03:37,010 DEBUG chr19:22829751-33244751: Successfully fit background model for 9,962,400 bp. Use segment r for 0 bp 2025-01-31 10:03:37,215 DEBUG chr19:33244751-35344251: Successfully fit background model for 1,835,218 bp. Use segment r for 0 bp 2025-01-31 10:03:37,839 DEBUG chr19:35344251-41590501: Successfully fit background model for 5,723,766 bp. Use segment r for 0 bp 2025-01-31 10:03:38,292 DEBUG chr19:41590501-46852751: Successfully fit background model for 5,089,918 bp. Use segment r for 0 bp 2025-01-31 10:03:38,508 DEBUG chr19:46852751-49284751: Successfully fit background model for 2,329,630 bp. Use segment r for 0 bp 2025-01-31 10:03:38,775 DEBUG chr19:49284751-52181751: Successfully fit background model for 2,665,572 bp. Use segment r for 0 bp 2025-01-31 10:03:39,779 DEBUG chr19:52181751-61431566: Successfully fit background model for 8,770,549 bp. Use segment r for 0 bp 2025-01-31 10:04:38,468 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:04:38,469 INFO Calculating per-bp p-values 2025-01-31 10:04:38,470 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:04:38,522 DEBUG chr1: Calculating p-values 2025-01-31 10:04:38,524 DEBUG chrX: Calculating p-values 2025-01-31 10:04:38,526 DEBUG chr4: Calculating p-values 2025-01-31 10:04:38,526 DEBUG chr2: Calculating p-values 2025-01-31 10:04:38,528 DEBUG chr3: Calculating p-values 2025-01-31 10:04:38,538 DEBUG chr5: Calculating p-values 2025-01-31 10:05:12,569 DEBUG Saving p-values for chrX 2025-01-31 10:05:15,807 DEBUG Saving p-values for chr3 2025-01-31 10:05:20,752 DEBUG Saving p-values for chr4 2025-01-31 10:05:21,450 DEBUG Saving p-values for chr5 2025-01-31 10:05:28,319 DEBUG Saving p-values for chr2 2025-01-31 10:05:39,937 DEBUG chr6: Calculating p-values 2025-01-31 10:05:41,220 DEBUG Saving p-values for chr1 2025-01-31 10:05:42,013 DEBUG chr7: Calculating p-values 2025-01-31 10:05:49,134 DEBUG chr10: Calculating p-values 2025-01-31 10:05:50,722 DEBUG chr8: Calculating p-values 2025-01-31 10:06:03,976 DEBUG chr14: Calculating p-values 2025-01-31 10:06:13,869 DEBUG Saving p-values for chr6 2025-01-31 10:06:17,429 DEBUG chr9: Calculating p-values 2025-01-31 10:06:18,929 DEBUG Saving p-values for chr7 2025-01-31 10:06:19,415 DEBUG Saving p-values for chr10 2025-01-31 10:06:23,195 DEBUG Saving p-values for chr8 2025-01-31 10:06:31,249 DEBUG Saving p-values for chr14 2025-01-31 10:06:40,485 DEBUG chr11: Calculating p-values 2025-01-31 10:06:41,180 DEBUG chr13: Calculating p-values 2025-01-31 10:06:43,658 DEBUG chr12: Calculating p-values 2025-01-31 10:06:49,277 DEBUG Saving p-values for chr9 2025-01-31 10:06:52,688 DEBUG chr15: Calculating p-values 2025-01-31 10:06:57,278 DEBUG chr16: Calculating p-values 2025-01-31 10:07:11,037 DEBUG Saving p-values for chr12 2025-01-31 10:07:12,041 DEBUG chr17: Calculating p-values 2025-01-31 10:07:18,784 DEBUG Saving p-values for chr13 2025-01-31 10:07:19,146 DEBUG Saving p-values for chr11 2025-01-31 10:07:23,681 DEBUG Saving p-values for chr16 2025-01-31 10:07:29,055 DEBUG Saving p-values for chr15 2025-01-31 10:07:31,026 DEBUG chrY: Calculating p-values 2025-01-31 10:07:33,897 DEBUG chr18: Calculating p-values 2025-01-31 10:07:36,319 DEBUG Saving p-values for chr17 2025-01-31 10:07:39,313 DEBUG chr19: Calculating p-values 2025-01-31 10:07:51,956 DEBUG Saving p-values for chr18 2025-01-31 10:07:55,181 DEBUG Saving p-values for chr19 2025-01-31 10:08:10,311 DEBUG Results of calc_pvals emitted. 2025-01-31 10:08:10,312 INFO Converting threshold values to bigwig 2025-01-31 10:08:10,312 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:08:26,395 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:08:56,624 INFO Converting background quantile values to bigwig 2025-01-31 10:08:56,624 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:09:33,503 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:10:01,041 INFO Calculating per-bp FDRs 2025-01-31 10:10:01,043 DEBUG AG81960: Extracting raw P-values 2025-01-31 10:10:39,901 DEBUG AG81960: Computing FDR 2025-01-31 10:10:55,209 DEBUG AG81960: Saving FDRs to parquet 2025-01-31 10:11:57,519 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:11:57,523 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:11:57,523 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:12:00,710 DEBUG chr3: Calling hotspots 2025-01-31 10:12:00,828 DEBUG chr5: Calling hotspots 2025-01-31 10:12:00,866 DEBUG chr4: Calling hotspots 2025-01-31 10:12:01,172 DEBUG chrX: Calling hotspots 2025-01-31 10:12:01,504 DEBUG chr2: Calling hotspots 2025-01-31 10:12:01,511 DEBUG chr1: Calling hotspots 2025-01-31 10:12:04,928 DEBUG chr5: 4253 hotspots called 2025-01-31 10:12:04,984 DEBUG chr3: 3487 hotspots called 2025-01-31 10:12:05,257 DEBUG chr4: 4448 hotspots called 2025-01-31 10:12:05,754 DEBUG chrX: 2301 hotspots called 2025-01-31 10:12:06,272 DEBUG chr2: 5316 hotspots called 2025-01-31 10:12:06,706 DEBUG chr1: 4774 hotspots called 2025-01-31 10:12:07,594 DEBUG chr10: Calling hotspots 2025-01-31 10:12:07,801 DEBUG chr7: Calling hotspots 2025-01-31 10:12:07,920 DEBUG chr6: Calling hotspots 2025-01-31 10:12:08,157 DEBUG chr8: Calling hotspots 2025-01-31 10:12:08,754 DEBUG chr14: Calling hotspots 2025-01-31 10:12:08,877 DEBUG chr9: Calling hotspots 2025-01-31 10:12:10,670 DEBUG chr10: 3309 hotspots called 2025-01-31 10:12:11,222 DEBUG chr7: 4360 hotspots called 2025-01-31 10:12:11,271 DEBUG chr8: 3232 hotspots called 2025-01-31 10:12:11,431 DEBUG chr6: 3497 hotspots called 2025-01-31 10:12:12,003 DEBUG chr14: 2257 hotspots called 2025-01-31 10:12:12,026 DEBUG chr9: 3664 hotspots called 2025-01-31 10:12:13,031 DEBUG chr11: Calling hotspots 2025-01-31 10:12:13,535 DEBUG chr15: Calling hotspots 2025-01-31 10:12:13,637 DEBUG chr13: Calling hotspots 2025-01-31 10:12:13,734 DEBUG chr12: Calling hotspots 2025-01-31 10:12:13,831 DEBUG chr17: Calling hotspots 2025-01-31 10:12:14,147 DEBUG chr16: Calling hotspots 2025-01-31 10:12:16,116 DEBUG chr15: 2974 hotspots called 2025-01-31 10:12:16,136 DEBUG chr11: 5065 hotspots called 2025-01-31 10:12:16,218 DEBUG chr17: 2861 hotspots called 2025-01-31 10:12:16,522 DEBUG chr13: 3321 hotspots called 2025-01-31 10:12:16,550 DEBUG chr16: 2265 hotspots called 2025-01-31 10:12:16,686 DEBUG chr12: 2578 hotspots called 2025-01-31 10:12:17,042 DEBUG chr19: Calling hotspots 2025-01-31 10:12:17,241 DEBUG chr18: Calling hotspots 2025-01-31 10:12:18,460 DEBUG chr19: 2225 hotspots called 2025-01-31 10:12:19,334 DEBUG chr18: 1813 hotspots called 2025-01-31 10:12:19,618 DEBUG Results of call_hotspots emitted. 2025-01-31 10:12:19,659 INFO There are 68000 hotspots called at FDR=0.05 2025-01-31 10:12:23,266 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:12:23,267 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:12:32,414 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:12:32,445 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:12:32,509 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:12:32,706 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:12:33,288 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:12:34,520 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:12:40,372 DEBUG chr4: 5256 peaks called 2025-01-31 10:12:40,762 DEBUG chr5: 5108 peaks called 2025-01-31 10:12:40,832 DEBUG chr3: 4167 peaks called 2025-01-31 10:12:41,229 DEBUG chrX: 2592 peaks called 2025-01-31 10:12:42,126 DEBUG chr2: 6323 peaks called 2025-01-31 10:12:43,135 DEBUG chr1: 5565 peaks called 2025-01-31 10:12:47,315 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:12:47,804 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:12:48,142 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:12:48,265 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:12:48,385 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:12:49,235 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:12:52,917 DEBUG chr8: 3889 peaks called 2025-01-31 10:12:53,653 DEBUG chr14: 2644 peaks called 2025-01-31 10:12:53,747 DEBUG chr10: 3949 peaks called 2025-01-31 10:12:54,391 DEBUG chr6: 4125 peaks called 2025-01-31 10:12:54,416 DEBUG chr9: 4421 peaks called 2025-01-31 10:12:54,822 DEBUG chr7: 5321 peaks called 2025-01-31 10:12:59,245 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:12:59,594 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:12:59,774 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:12:59,869 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:12:59,996 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:13:00,010 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:13:03,078 DEBUG chr15: 3540 peaks called 2025-01-31 10:13:03,208 DEBUG chr16: 2669 peaks called 2025-01-31 10:13:03,306 DEBUG chr17: 3551 peaks called 2025-01-31 10:13:03,482 DEBUG chr11: 6342 peaks called 2025-01-31 10:13:04,130 DEBUG chr12: 3047 peaks called 2025-01-31 10:13:04,140 DEBUG chr13: 3994 peaks called 2025-01-31 10:13:05,373 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:13:05,713 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:13:07,111 DEBUG chr19: 2744 peaks called 2025-01-31 10:13:08,214 DEBUG chr18: 2127 peaks called 2025-01-31 10:13:08,500 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:13:08,535 INFO There are 81374 peaks called at FDR=0.05 2025-01-31 10:13:09,970 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:13:09,970 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:13:13,853 DEBUG chr3: Calling hotspots 2025-01-31 10:13:13,952 DEBUG chr4: Calling hotspots 2025-01-31 10:13:14,166 DEBUG chr5: Calling hotspots 2025-01-31 10:13:14,223 DEBUG chrX: Calling hotspots 2025-01-31 10:13:14,484 DEBUG chr1: Calling hotspots 2025-01-31 10:13:14,553 DEBUG chr2: Calling hotspots 2025-01-31 10:13:17,985 DEBUG chr4: 3523 hotspots called 2025-01-31 10:13:18,022 DEBUG chr3: 2773 hotspots called 2025-01-31 10:13:18,045 DEBUG chr5: 3471 hotspots called 2025-01-31 10:13:18,592 DEBUG chrX: 1687 hotspots called 2025-01-31 10:13:19,629 DEBUG chr2: 4363 hotspots called 2025-01-31 10:13:19,824 DEBUG chr1: 3667 hotspots called 2025-01-31 10:13:20,740 DEBUG chr10: Calling hotspots 2025-01-31 10:13:21,044 DEBUG chr6: Calling hotspots 2025-01-31 10:13:21,113 DEBUG chr8: Calling hotspots 2025-01-31 10:13:21,217 DEBUG chr7: Calling hotspots 2025-01-31 10:13:22,051 DEBUG chr14: Calling hotspots 2025-01-31 10:13:22,166 DEBUG chr9: Calling hotspots 2025-01-31 10:13:24,159 DEBUG chr10: 2626 hotspots called 2025-01-31 10:13:24,726 DEBUG chr8: 2624 hotspots called 2025-01-31 10:13:24,927 DEBUG chr7: 3628 hotspots called 2025-01-31 10:13:25,118 DEBUG chr6: 2778 hotspots called 2025-01-31 10:13:25,330 DEBUG chr14: 1779 hotspots called 2025-01-31 10:13:25,460 DEBUG chr9: 3001 hotspots called 2025-01-31 10:13:26,622 DEBUG chr11: Calling hotspots 2025-01-31 10:13:27,013 DEBUG chr13: Calling hotspots 2025-01-31 10:13:27,161 DEBUG chr15: Calling hotspots 2025-01-31 10:13:27,290 DEBUG chr16: Calling hotspots 2025-01-31 10:13:27,441 DEBUG chr17: Calling hotspots 2025-01-31 10:13:27,495 DEBUG chr12: Calling hotspots 2025-01-31 10:13:29,591 DEBUG chr11: 4289 hotspots called 2025-01-31 10:13:29,668 DEBUG chr16: 1732 hotspots called 2025-01-31 10:13:29,815 DEBUG chr15: 2395 hotspots called 2025-01-31 10:13:29,822 DEBUG chr17: 2362 hotspots called 2025-01-31 10:13:30,067 DEBUG chr13: 2641 hotspots called 2025-01-31 10:13:30,287 DEBUG chr12: 2050 hotspots called 2025-01-31 10:13:30,581 DEBUG chr19: Calling hotspots 2025-01-31 10:13:30,746 DEBUG chr18: Calling hotspots 2025-01-31 10:13:31,975 DEBUG chr19: 1837 hotspots called 2025-01-31 10:13:32,711 DEBUG chr18: 1414 hotspots called 2025-01-31 10:13:32,944 DEBUG Results of call_hotspots emitted. 2025-01-31 10:13:32,976 INFO There are 54640 hotspots called at FDR=0.01 2025-01-31 10:13:35,811 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:13:35,811 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:13:44,095 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:13:45,361 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:13:45,861 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:13:46,120 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:13:46,676 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:13:47,485 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:13:53,527 DEBUG chr5: 4203 peaks called 2025-01-31 10:13:54,653 DEBUG chr4: 4212 peaks called 2025-01-31 10:13:55,188 DEBUG chr3: 3368 peaks called 2025-01-31 10:13:56,928 DEBUG chrX: 1977 peaks called 2025-01-31 10:13:57,560 DEBUG chr2: 5237 peaks called 2025-01-31 10:13:58,565 DEBUG chr1: 4419 peaks called 2025-01-31 10:14:00,396 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:14:02,451 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:14:02,720 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:14:03,731 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:14:03,813 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:14:04,515 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:14:04,851 DEBUG chr6: 3315 peaks called 2025-01-31 10:14:07,745 DEBUG chr10: 3200 peaks called 2025-01-31 10:14:07,846 DEBUG chr7: 4469 peaks called 2025-01-31 10:14:08,150 DEBUG chr14: 2118 peaks called 2025-01-31 10:14:08,663 DEBUG chr8: 3218 peaks called 2025-01-31 10:14:10,083 DEBUG chr9: 3660 peaks called 2025-01-31 10:14:11,423 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:14:13,408 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:14:14,139 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:14:14,195 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:14:14,274 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:14:14,604 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:14:15,630 DEBUG chr11: 5370 peaks called 2025-01-31 10:14:17,168 DEBUG chr15: 2899 peaks called 2025-01-31 10:14:17,826 DEBUG chr16: 2114 peaks called 2025-01-31 10:14:18,906 DEBUG chr12: 2442 peaks called 2025-01-31 10:14:18,952 DEBUG chr17: 2965 peaks called 2025-01-31 10:14:19,257 DEBUG chr13: 3269 peaks called 2025-01-31 10:14:19,625 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:14:19,980 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:14:22,097 DEBUG chr19: 2281 peaks called 2025-01-31 10:14:23,522 DEBUG chr18: 1698 peaks called 2025-01-31 10:14:23,904 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:14:23,938 INFO There are 66434 peaks called at FDR=0.01 2025-01-31 10:14:25,158 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:14:25,159 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:14:28,827 DEBUG chr5: Calling hotspots 2025-01-31 10:14:28,956 DEBUG chr4: Calling hotspots 2025-01-31 10:14:29,080 DEBUG chr3: Calling hotspots 2025-01-31 10:14:29,190 DEBUG chrX: Calling hotspots 2025-01-31 10:14:29,334 DEBUG chr2: Calling hotspots 2025-01-31 10:14:29,642 DEBUG chr1: Calling hotspots 2025-01-31 10:14:35,528 DEBUG chr5: 2931 hotspots called 2025-01-31 10:14:35,976 DEBUG chr4: 2989 hotspots called 2025-01-31 10:14:36,262 DEBUG chr3: 2306 hotspots called 2025-01-31 10:14:37,092 DEBUG chrX: 1342 hotspots called 2025-01-31 10:14:37,641 DEBUG chr2: 3705 hotspots called 2025-01-31 10:14:38,585 DEBUG chr6: Calling hotspots 2025-01-31 10:14:38,706 DEBUG chr1: 3059 hotspots called 2025-01-31 10:14:38,711 DEBUG chr7: Calling hotspots 2025-01-31 10:14:39,030 DEBUG chr10: Calling hotspots 2025-01-31 10:14:39,691 DEBUG chr8: Calling hotspots 2025-01-31 10:14:40,147 DEBUG chr14: Calling hotspots 2025-01-31 10:14:40,716 DEBUG chr9: Calling hotspots 2025-01-31 10:14:44,756 DEBUG chr10: 2230 hotspots called 2025-01-31 10:14:45,246 DEBUG chr6: 2278 hotspots called 2025-01-31 10:14:45,287 DEBUG chr7: 3050 hotspots called 2025-01-31 10:14:45,791 DEBUG chr14: 1499 hotspots called 2025-01-31 10:14:45,823 DEBUG chr8: 2285 hotspots called 2025-01-31 10:14:46,351 DEBUG chr9: 2571 hotspots called 2025-01-31 10:14:47,162 DEBUG chr11: Calling hotspots 2025-01-31 10:14:47,733 DEBUG chr13: Calling hotspots 2025-01-31 10:14:47,891 DEBUG chr16: Calling hotspots 2025-01-31 10:14:47,981 DEBUG chr12: Calling hotspots 2025-01-31 10:14:48,059 DEBUG chr15: Calling hotspots 2025-01-31 10:14:48,229 DEBUG chr17: Calling hotspots 2025-01-31 10:14:52,542 DEBUG chr16: 1436 hotspots called 2025-01-31 10:14:52,609 DEBUG chr17: 2016 hotspots called 2025-01-31 10:14:52,622 DEBUG chr11: 3691 hotspots called 2025-01-31 10:14:52,733 DEBUG chr15: 2054 hotspots called 2025-01-31 10:14:53,008 DEBUG chr13: 2199 hotspots called 2025-01-31 10:14:53,296 DEBUG chr12: 1713 hotspots called 2025-01-31 10:14:53,480 DEBUG chr19: Calling hotspots 2025-01-31 10:14:53,794 DEBUG chr18: Calling hotspots 2025-01-31 10:14:55,888 DEBUG chr19: 1575 hotspots called 2025-01-31 10:14:57,250 DEBUG chr18: 1199 hotspots called 2025-01-31 10:14:57,576 DEBUG Results of call_hotspots emitted. 2025-01-31 10:14:57,610 INFO There are 46128 hotspots called at FDR=0.001 2025-01-31 10:14:59,998 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:14:59,998 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:15:09,719 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:15:10,051 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:15:10,425 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:15:10,568 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:15:11,291 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:15:11,623 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:15:22,033 DEBUG chr5: 3521 peaks called 2025-01-31 10:15:22,070 DEBUG chr3: 2790 peaks called 2025-01-31 10:15:22,577 DEBUG chr4: 3526 peaks called 2025-01-31 10:15:22,603 DEBUG chrX: 1585 peaks called 2025-01-31 10:15:24,120 DEBUG chr2: 4379 peaks called 2025-01-31 10:15:25,012 DEBUG chr1: 3676 peaks called 2025-01-31 10:15:30,247 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:15:30,333 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:15:30,351 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:15:30,418 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:15:31,573 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:15:32,153 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:15:36,717 DEBUG chr8: 2734 peaks called 2025-01-31 10:15:36,993 DEBUG chr10: 2680 peaks called 2025-01-31 10:15:37,336 DEBUG chr14: 1776 peaks called 2025-01-31 10:15:37,401 DEBUG chr7: 3701 peaks called 2025-01-31 10:15:37,620 DEBUG chr6: 2715 peaks called 2025-01-31 10:15:37,682 DEBUG chr9: 3089 peaks called 2025-01-31 10:15:43,272 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:15:43,621 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:15:43,666 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:15:43,793 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:15:43,995 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:15:44,160 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:15:48,364 DEBUG chr17: 2479 peaks called 2025-01-31 10:15:48,680 DEBUG chr16: 1749 peaks called 2025-01-31 10:15:49,039 DEBUG chr15: 2451 peaks called 2025-01-31 10:15:49,311 DEBUG chr13: 2722 peaks called 2025-01-31 10:15:49,623 DEBUG chr12: 2030 peaks called 2025-01-31 10:15:50,123 DEBUG chr11: 4546 peaks called 2025-01-31 10:15:51,106 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:15:51,469 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:15:52,861 DEBUG chr19: 1925 peaks called 2025-01-31 10:15:53,906 DEBUG chr18: 1411 peaks called 2025-01-31 10:15:54,498 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:15:54,652 INFO There are 55485 peaks called at FDR=0.001 2025-01-31 10:15:55,765 INFO Saving density 2025-01-31 10:15:55,766 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:16:14,836 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:16:20,304 DEBUG Converting density to bigwig 2025-01-31 10:17:33,630 INFO Program finished