2025-01-31 09:31:53,921 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:53,924 INFO Extracting cutcounts from bam file 2025-01-31 09:34:20,605 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:34:20,928 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:34:20,930 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:34:20,930 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:34:20,932 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:34:20,932 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:34:20,945 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:34:24,408 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:34:24,411 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:34:24,414 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:34:24,419 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:34:24,477 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:34:24,526 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:34:25,474 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:34:25,584 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:34:25,683 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:34:25,703 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:34:25,806 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:34:25,810 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:34:26,716 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:34:26,717 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:34:26,768 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:34:27,436 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:34:27,437 INFO Total cutcounts = 22986452 2025-01-31 09:34:27,442 INFO Smoothing signal using MODWT 2025-01-31 09:34:27,444 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:34:27,492 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,496 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,496 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,497 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,497 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,497 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:01,680 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:05,331 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:07,189 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:13,113 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:42,582 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:05,124 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:05,552 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:09,359 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:16,957 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:21,713 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:30,715 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:11,524 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:56,618 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:59,978 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:42:01,949 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:43:28,163 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:43:28,163 INFO Estimating parameters of background model 2025-01-31 09:43:28,163 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:43:33,155 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:43:33,388 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:43:33,435 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:43:34,020 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:43:34,540 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:43:34,949 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:43:52,310 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:43:52,311 DEBUG chr5: Signal quantile: 0.995. signal threshold: 14. Best RMSEA: 0.042 2025-01-31 09:43:53,149 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:43:53,151 DEBUG chr4: Signal quantile: 0.994. signal threshold: 14. Best RMSEA: 0.045 2025-01-31 09:43:53,452 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:43:53,454 DEBUG chr3: Signal quantile: 0.994. signal threshold: 13. Best RMSEA: 0.047 2025-01-31 09:43:55,533 DEBUG chr5 total SNP count: 260921 2025-01-31 09:43:55,533 DEBUG chr5 length: 151834684 2025-01-31 09:43:55,533 DEBUG ----------------------------------------- 2025-01-31 09:43:55,533 INFO Processing SNPs in chr5 2025-01-31 09:43:55,824 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 260921)] 2025-01-31 09:43:56,019 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:57,201 DEBUG chr4 total SNP count: 264388 2025-01-31 09:43:57,201 DEBUG chr4 length: 156508116 2025-01-31 09:43:57,201 DEBUG ----------------------------------------- 2025-01-31 09:43:57,202 INFO Processing SNPs in chr4 2025-01-31 09:43:57,323 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:43:57,325 DEBUG chr2: Signal quantile: 0.994. signal threshold: 14. Best RMSEA: 0.044 2025-01-31 09:43:57,453 DEBUG chr3 total SNP count: 274393 2025-01-31 09:43:57,453 DEBUG chr3 length: 160039680 2025-01-31 09:43:57,453 DEBUG ----------------------------------------- 2025-01-31 09:43:57,454 INFO Processing SNPs in chr3 2025-01-31 09:43:57,649 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 66845), (66845, 264388)] 2025-01-31 09:43:57,750 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 274393)] 2025-01-31 09:43:57,794 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:57,967 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:58,122 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:43:58,125 WARNING chrX: Best RMSEA: 0.055. Chromosome fit might be poorly approximated. 2025-01-31 09:43:58,125 DEBUG chrX: Signal quantile: 0.994. signal threshold: 11. Best RMSEA: 0.055 2025-01-31 09:44:00,341 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:44:00,361 DEBUG chr1: Signal quantile: 0.995. signal threshold: 15. Best RMSEA: 0.042 2025-01-31 09:44:01,536 DEBUG chr2 total SNP count: 318765 2025-01-31 09:44:01,536 DEBUG chr2 length: 182113224 2025-01-31 09:44:01,536 DEBUG ----------------------------------------- 2025-01-31 09:44:01,537 INFO Processing SNPs in chr2 2025-01-31 09:44:02,033 DEBUG chrX total SNP count: 248365 2025-01-31 09:44:02,034 DEBUG chrX length: 171031299 2025-01-31 09:44:02,034 DEBUG ----------------------------------------- 2025-01-31 09:44:02,034 INFO Processing SNPs in chrX 2025-01-31 09:44:02,068 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 310836), (310836, 318765)] 2025-01-31 09:44:02,294 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:02,454 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 33173), (33173, 33175), (33175, 33233), (33233, 177184), (177184, 248365)] 2025-01-31 09:44:02,576 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:03,901 DEBUG chr1 total SNP count: 343480 2025-01-31 09:44:03,901 DEBUG chr1 length: 195471971 2025-01-31 09:44:03,901 DEBUG ----------------------------------------- 2025-01-31 09:44:03,901 INFO Processing SNPs in chr1 2025-01-31 09:44:04,268 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 343480)] 2025-01-31 09:44:04,514 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:06,209 DEBUG Segmenting atomic regions: 2025-01-31 09:44:06,331 DEBUG Processing 1/221 atomic regions from SNP 0 to 602 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,640 DEBUG Segmenting atomic regions: 2025-01-31 09:44:06,754 DEBUG Processing 1/109 atomic regions from SNP 0 to 602 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:07,054 DEBUG Processing 2/221 atomic regions from SNP 302 to 904 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,291 DEBUG Processing 3/221 atomic regions from SNP 604 to 1206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,481 DEBUG Processing 2/109 atomic regions from SNP 302 to 904 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:07,540 DEBUG Processing 4/221 atomic regions from SNP 906 to 1508 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,711 DEBUG Processing 3/109 atomic regions from SNP 604 to 1206 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:07,775 DEBUG Processing 5/221 atomic regions from SNP 1208 to 1810 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,938 DEBUG Processing 4/109 atomic regions from SNP 906 to 1508 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:08,006 DEBUG Processing 6/221 atomic regions from SNP 1510 to 2112 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,171 DEBUG Processing 5/109 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:08,237 DEBUG Processing 7/221 atomic regions from SNP 1812 to 2414 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,406 DEBUG Processing 6/109 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:08,477 DEBUG Processing 8/221 atomic regions from SNP 2114 to 2716 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,642 DEBUG Processing 7/109 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:08,716 DEBUG Processing 9/221 atomic regions from SNP 2416 to 3018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,872 DEBUG Processing 8/109 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:08,955 DEBUG Processing 10/221 atomic regions from SNP 2718 to 3320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,114 DEBUG Processing 9/109 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:09,203 DEBUG Processing 11/221 atomic regions from SNP 3020 to 3622 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,346 DEBUG Processing 10/109 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:09,435 DEBUG Processing 12/221 atomic regions from SNP 3322 to 3924 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,583 DEBUG Processing 11/109 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:09,666 DEBUG Processing 13/221 atomic regions from SNP 3624 to 4226 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,823 DEBUG Processing 12/109 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:09,900 DEBUG Processing 14/221 atomic regions from SNP 3926 to 4528 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,068 DEBUG Processing 13/109 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:10,133 DEBUG Processing 15/221 atomic regions from SNP 4228 to 4830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,318 DEBUG Processing 14/109 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:10,369 DEBUG Processing 16/221 atomic regions from SNP 4530 to 5132 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,585 DEBUG Processing 15/109 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:10,610 DEBUG Processing 17/221 atomic regions from SNP 4832 to 5434 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,854 DEBUG Processing 18/221 atomic regions from SNP 5134 to 5736 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,856 DEBUG Processing 16/109 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:11,095 DEBUG Processing 19/221 atomic regions from SNP 5436 to 6038 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,116 DEBUG Processing 17/109 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:11,333 DEBUG Processing 20/221 atomic regions from SNP 5738 to 6340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,376 DEBUG Processing 18/109 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:11,567 DEBUG Processing 21/221 atomic regions from SNP 6040 to 6642 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,623 DEBUG Processing 19/109 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:11,804 DEBUG Processing 22/221 atomic regions from SNP 6342 to 6944 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,862 DEBUG Processing 20/109 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:12,040 DEBUG Processing 23/221 atomic regions from SNP 6644 to 7246 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,106 DEBUG Processing 21/109 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:12,276 DEBUG Processing 24/221 atomic regions from SNP 6946 to 7547 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,345 DEBUG Processing 22/109 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:12,509 DEBUG Processing 25/221 atomic regions from SNP 7247 to 7848 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,586 DEBUG Processing 23/109 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:12,745 DEBUG Processing 26/221 atomic regions from SNP 7548 to 8149 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,826 DEBUG Processing 24/109 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:12,982 DEBUG Processing 27/221 atomic regions from SNP 7849 to 8450 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,058 DEBUG Processing 25/109 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:13,220 DEBUG Processing 28/221 atomic regions from SNP 8150 to 8751 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,287 DEBUG Processing 26/109 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:13,457 DEBUG Processing 29/221 atomic regions from SNP 8451 to 9052 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,520 DEBUG Processing 27/109 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:13,689 DEBUG Processing 30/221 atomic regions from SNP 8752 to 9353 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,758 DEBUG Processing 28/109 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:13,920 DEBUG Processing 31/221 atomic regions from SNP 9053 to 9654 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,998 DEBUG Processing 29/109 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:14,154 DEBUG Processing 32/221 atomic regions from SNP 9354 to 9955 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,236 DEBUG Processing 30/109 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:14,381 DEBUG Processing 33/221 atomic regions from SNP 9655 to 10256 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,472 DEBUG Processing 31/109 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:14,613 DEBUG Processing 34/221 atomic regions from SNP 9956 to 10557 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,707 DEBUG Processing 32/109 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:14,846 DEBUG Processing 35/221 atomic regions from SNP 10257 to 10858 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,938 DEBUG Processing 33/109 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:15,083 DEBUG Processing 36/221 atomic regions from SNP 10558 to 11159 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,175 DEBUG Processing 34/109 atomic regions from SNP 9966 to 10568 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:15,320 DEBUG Processing 37/221 atomic regions from SNP 10859 to 11460 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,417 DEBUG Processing 35/109 atomic regions from SNP 10268 to 10870 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:15,554 DEBUG Processing 38/221 atomic regions from SNP 11160 to 11761 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,671 DEBUG Processing 36/109 atomic regions from SNP 10570 to 11172 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:15,782 DEBUG Processing 39/221 atomic regions from SNP 11461 to 12062 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,928 DEBUG Processing 37/109 atomic regions from SNP 10872 to 11474 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:16,010 DEBUG Processing 40/221 atomic regions from SNP 11762 to 12363 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,189 DEBUG Processing 38/109 atomic regions from SNP 11174 to 11776 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:16,239 DEBUG Processing 41/221 atomic regions from SNP 12063 to 12664 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,453 DEBUG Processing 39/109 atomic regions from SNP 11476 to 12078 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:16,474 DEBUG Processing 42/221 atomic regions from SNP 12364 to 12965 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,712 DEBUG Processing 43/221 atomic regions from SNP 12665 to 13266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,714 DEBUG Processing 40/109 atomic regions from SNP 11778 to 12380 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:16,947 DEBUG Processing 44/221 atomic regions from SNP 12966 to 13567 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,970 DEBUG Processing 41/109 atomic regions from SNP 12080 to 12682 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:17,197 DEBUG Processing 45/221 atomic regions from SNP 13267 to 13868 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,224 DEBUG Processing 42/109 atomic regions from SNP 12382 to 12984 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:17,445 DEBUG Processing 46/221 atomic regions from SNP 13568 to 14169 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,471 DEBUG Processing 43/109 atomic regions from SNP 12684 to 13286 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:17,690 DEBUG Processing 47/221 atomic regions from SNP 13869 to 14470 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,720 DEBUG Processing 44/109 atomic regions from SNP 12986 to 13588 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:17,922 DEBUG Processing 48/221 atomic regions from SNP 14170 to 14771 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,964 DEBUG Processing 45/109 atomic regions from SNP 13288 to 13890 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:18,154 DEBUG Processing 49/221 atomic regions from SNP 14471 to 15072 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,204 DEBUG Processing 46/109 atomic regions from SNP 13590 to 14192 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:18,390 DEBUG Processing 50/221 atomic regions from SNP 14772 to 15373 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,447 DEBUG Processing 47/109 atomic regions from SNP 13892 to 14494 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:18,627 DEBUG Processing 51/221 atomic regions from SNP 15073 to 15674 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,684 DEBUG Processing 48/109 atomic regions from SNP 14194 to 14796 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:18,863 DEBUG Processing 52/221 atomic regions from SNP 15374 to 15975 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,913 DEBUG Processing 49/109 atomic regions from SNP 14496 to 15098 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:19,104 DEBUG Processing 53/221 atomic regions from SNP 15675 to 16276 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,140 DEBUG Processing 50/109 atomic regions from SNP 14798 to 15400 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:19,347 DEBUG Processing 54/221 atomic regions from SNP 15976 to 16577 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,377 DEBUG Processing 51/109 atomic regions from SNP 15100 to 15702 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:19,587 DEBUG Processing 55/221 atomic regions from SNP 16277 to 16878 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,609 DEBUG Processing 52/109 atomic regions from SNP 15402 to 16004 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:19,827 DEBUG Processing 56/221 atomic regions from SNP 16578 to 17179 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,843 DEBUG Processing 53/109 atomic regions from SNP 15704 to 16306 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:20,065 DEBUG Processing 57/221 atomic regions from SNP 16879 to 17480 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,075 DEBUG Processing 54/109 atomic regions from SNP 16006 to 16608 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:20,300 DEBUG Processing 58/221 atomic regions from SNP 17180 to 17781 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,304 DEBUG Processing 55/109 atomic regions from SNP 16308 to 16910 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:20,533 DEBUG Processing 56/109 atomic regions from SNP 16610 to 17212 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:20,538 DEBUG Processing 59/221 atomic regions from SNP 17481 to 18082 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,766 DEBUG Processing 57/109 atomic regions from SNP 16912 to 17514 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:20,780 DEBUG Processing 60/221 atomic regions from SNP 17782 to 18383 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,003 DEBUG Processing 58/109 atomic regions from SNP 17214 to 17816 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:21,020 DEBUG Processing 61/221 atomic regions from SNP 18083 to 18684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,237 DEBUG Processing 59/109 atomic regions from SNP 17516 to 18118 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:21,266 DEBUG Processing 62/221 atomic regions from SNP 18384 to 18985 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,469 DEBUG Processing 60/109 atomic regions from SNP 17818 to 18420 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:21,509 DEBUG Processing 63/221 atomic regions from SNP 18685 to 19286 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,697 DEBUG Processing 61/109 atomic regions from SNP 18120 to 18722 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:21,754 DEBUG Processing 64/221 atomic regions from SNP 18986 to 19587 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,931 DEBUG Processing 62/109 atomic regions from SNP 18422 to 19024 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:21,994 DEBUG Processing 65/221 atomic regions from SNP 19287 to 19888 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,155 DEBUG Processing 63/109 atomic regions from SNP 18724 to 19326 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:22,228 DEBUG Processing 66/221 atomic regions from SNP 19588 to 20189 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,382 DEBUG Processing 64/109 atomic regions from SNP 19026 to 19627 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:22,461 DEBUG Processing 67/221 atomic regions from SNP 19889 to 20490 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,617 DEBUG Processing 65/109 atomic regions from SNP 19327 to 19928 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:22,707 DEBUG Processing 68/221 atomic regions from SNP 20190 to 20791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,851 DEBUG Processing 66/109 atomic regions from SNP 19628 to 20229 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:22,947 DEBUG Processing 69/221 atomic regions from SNP 20491 to 21092 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,073 DEBUG Processing 67/109 atomic regions from SNP 19929 to 20530 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:23,187 DEBUG Processing 70/221 atomic regions from SNP 20792 to 21393 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,293 DEBUG Processing 68/109 atomic regions from SNP 20230 to 20831 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:23,428 DEBUG Processing 71/221 atomic regions from SNP 21093 to 21694 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,522 DEBUG Processing 69/109 atomic regions from SNP 20531 to 21132 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:23,666 DEBUG Processing 72/221 atomic regions from SNP 21394 to 21995 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,754 DEBUG Processing 70/109 atomic regions from SNP 20832 to 21433 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:23,899 DEBUG Processing 73/221 atomic regions from SNP 21695 to 22296 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,989 DEBUG Processing 71/109 atomic regions from SNP 21133 to 21734 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:24,128 DEBUG Processing 74/221 atomic regions from SNP 21996 to 22597 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,222 DEBUG Processing 72/109 atomic regions from SNP 21434 to 22035 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:24,358 DEBUG Processing 75/221 atomic regions from SNP 22297 to 22898 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,450 DEBUG Processing 73/109 atomic regions from SNP 21735 to 22336 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:24,594 DEBUG Processing 76/221 atomic regions from SNP 22598 to 23199 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,674 DEBUG Processing 74/109 atomic regions from SNP 22036 to 22637 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:24,830 DEBUG Processing 77/221 atomic regions from SNP 22899 to 23500 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,896 DEBUG Processing 75/109 atomic regions from SNP 22337 to 22938 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:25,069 DEBUG Processing 78/221 atomic regions from SNP 23200 to 23801 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,119 DEBUG Processing 76/109 atomic regions from SNP 22638 to 23239 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:25,307 DEBUG Processing 79/221 atomic regions from SNP 23501 to 24102 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,344 DEBUG Processing 77/109 atomic regions from SNP 22939 to 23540 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:25,543 DEBUG Processing 80/221 atomic regions from SNP 23802 to 24403 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,571 DEBUG Processing 78/109 atomic regions from SNP 23240 to 23841 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:25,774 DEBUG Processing 81/221 atomic regions from SNP 24103 to 24704 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,798 DEBUG Processing 79/109 atomic regions from SNP 23541 to 24142 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:26,009 DEBUG Processing 82/221 atomic regions from SNP 24404 to 25005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,024 DEBUG Processing 80/109 atomic regions from SNP 23842 to 24443 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:26,240 DEBUG Processing 83/221 atomic regions from SNP 24705 to 25306 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,248 DEBUG Processing 81/109 atomic regions from SNP 24143 to 24744 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:26,474 DEBUG Processing 82/109 atomic regions from SNP 24444 to 25045 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:26,474 DEBUG Processing 84/221 atomic regions from SNP 25006 to 25607 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,704 DEBUG Processing 83/109 atomic regions from SNP 24745 to 25346 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:26,711 DEBUG Processing 85/221 atomic regions from SNP 25307 to 25908 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,945 DEBUG Processing 84/109 atomic regions from SNP 25046 to 25647 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:26,956 DEBUG Processing 86/221 atomic regions from SNP 25608 to 26209 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,178 DEBUG Processing 85/109 atomic regions from SNP 25347 to 25948 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:27,195 DEBUG Processing 87/221 atomic regions from SNP 25909 to 26510 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,417 DEBUG Processing 86/109 atomic regions from SNP 25648 to 26249 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:27,431 DEBUG Processing 88/221 atomic regions from SNP 26210 to 26811 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,648 DEBUG Processing 87/109 atomic regions from SNP 25949 to 26550 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:27,662 DEBUG Processing 89/221 atomic regions from SNP 26511 to 27112 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,895 DEBUG Processing 90/221 atomic regions from SNP 26812 to 27413 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,898 DEBUG Processing 88/109 atomic regions from SNP 26250 to 26851 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:28,132 DEBUG Processing 91/221 atomic regions from SNP 27113 to 27714 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,150 DEBUG Processing 89/109 atomic regions from SNP 26551 to 27152 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:28,367 DEBUG Processing 92/221 atomic regions from SNP 27414 to 28015 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,392 DEBUG Processing 90/109 atomic regions from SNP 26852 to 27453 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:28,527 DEBUG Segmenting atomic regions: 2025-01-31 09:44:28,601 DEBUG Processing 93/221 atomic regions from SNP 27715 to 28316 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,623 DEBUG Processing 91/109 atomic regions from SNP 27153 to 27754 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:28,647 DEBUG Processing 1/868 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,832 DEBUG Processing 94/221 atomic regions from SNP 28016 to 28617 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,856 DEBUG Processing 92/109 atomic regions from SNP 27454 to 28055 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:29,062 DEBUG Processing 95/221 atomic regions from SNP 28317 to 28918 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,083 DEBUG Processing 93/109 atomic regions from SNP 27755 to 28356 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:29,295 DEBUG Processing 96/221 atomic regions from SNP 28618 to 29219 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,310 DEBUG Processing 94/109 atomic regions from SNP 28056 to 28657 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:29,417 DEBUG Processing 2/868 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,527 DEBUG Processing 97/221 atomic regions from SNP 28919 to 29520 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,538 DEBUG Processing 95/109 atomic regions from SNP 28357 to 28958 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:29,655 DEBUG Processing 3/868 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,755 DEBUG Processing 98/221 atomic regions from SNP 29220 to 29821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,761 DEBUG Processing 96/109 atomic regions from SNP 28658 to 29259 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:29,901 DEBUG Processing 4/868 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,996 DEBUG Processing 97/109 atomic regions from SNP 28959 to 29560 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:29,997 DEBUG Processing 99/221 atomic regions from SNP 29521 to 30122 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,144 DEBUG Processing 5/868 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,220 DEBUG Processing 98/109 atomic regions from SNP 29260 to 29861 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:30,225 DEBUG Processing 100/221 atomic regions from SNP 29822 to 30423 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,392 DEBUG Processing 6/868 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,451 DEBUG Processing 99/109 atomic regions from SNP 29561 to 30162 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:30,459 DEBUG Processing 101/221 atomic regions from SNP 30123 to 30724 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,636 DEBUG Processing 7/868 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,686 DEBUG Processing 100/109 atomic regions from SNP 29862 to 30463 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:30,697 DEBUG Processing 102/221 atomic regions from SNP 30424 to 31025 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,880 DEBUG Processing 8/868 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,921 DEBUG Processing 101/109 atomic regions from SNP 30163 to 30764 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:30,937 DEBUG Processing 103/221 atomic regions from SNP 30725 to 31326 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,120 DEBUG Processing 9/868 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,151 DEBUG Processing 102/109 atomic regions from SNP 30464 to 31065 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:31,169 DEBUG Processing 104/221 atomic regions from SNP 31026 to 31627 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,362 DEBUG Processing 10/868 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,381 DEBUG Processing 103/109 atomic regions from SNP 30765 to 31366 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:31,403 DEBUG Processing 105/221 atomic regions from SNP 31327 to 31928 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,612 DEBUG Processing 11/868 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,614 DEBUG Processing 104/109 atomic regions from SNP 31066 to 31667 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:31,638 DEBUG Processing 106/221 atomic regions from SNP 31628 to 32229 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,853 DEBUG Processing 105/109 atomic regions from SNP 31367 to 31968 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:31,861 DEBUG Processing 12/868 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,880 DEBUG Processing 107/221 atomic regions from SNP 31929 to 32530 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,097 DEBUG Processing 106/109 atomic regions from SNP 31668 to 32269 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:32,113 DEBUG Processing 13/868 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,126 DEBUG Processing 108/221 atomic regions from SNP 32230 to 32831 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,334 DEBUG Processing 107/109 atomic regions from SNP 31969 to 32570 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:32,367 DEBUG Processing 109/221 atomic regions from SNP 32531 to 33132 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,368 DEBUG Processing 14/868 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,570 DEBUG Processing 108/109 atomic regions from SNP 32270 to 32871 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:32,611 DEBUG Processing 110/221 atomic regions from SNP 32832 to 33433 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,614 DEBUG Segmenting atomic regions: 2025-01-31 09:44:32,614 DEBUG Processing 15/868 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,740 DEBUG Processing 1/913 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,796 DEBUG Processing 109/109 atomic regions from SNP 32571 to 33172 for chrX (subchromosome 1 of 5). 2025-01-31 09:44:32,849 DEBUG Processing 111/221 atomic regions from SNP 33133 to 33734 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,855 DEBUG Processing 16/868 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,912 DEBUG Unique SNPs positions in subchromosome 1: 33173 2025-01-31 09:44:32,951 DEBUG Subchromosome time: 30.375282610068098, subchromosome SNPs: 33173 2025-01-31 09:44:32,989 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:33,089 DEBUG Processing 112/221 atomic regions from SNP 33434 to 34035 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,098 DEBUG Processing 17/868 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,331 DEBUG Processing 113/221 atomic regions from SNP 33735 to 34336 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,344 DEBUG Processing 18/868 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,494 DEBUG Processing 2/913 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,573 DEBUG Processing 114/221 atomic regions from SNP 34036 to 34637 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,592 DEBUG Processing 19/868 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,732 DEBUG Processing 3/913 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,809 DEBUG Processing 115/221 atomic regions from SNP 34337 to 34938 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,832 DEBUG Processing 20/868 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,966 DEBUG Processing 4/913 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,044 DEBUG Processing 116/221 atomic regions from SNP 34638 to 35239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,068 DEBUG Processing 21/868 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,198 DEBUG Processing 5/913 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,275 DEBUG Processing 117/221 atomic regions from SNP 34939 to 35540 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,301 DEBUG Processing 22/868 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,434 DEBUG Processing 6/913 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,511 DEBUG Processing 118/221 atomic regions from SNP 35240 to 35841 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,538 DEBUG Processing 23/868 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,676 DEBUG Processing 7/913 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,746 DEBUG Processing 119/221 atomic regions from SNP 35541 to 36142 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,779 DEBUG Processing 24/868 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,914 DEBUG Processing 8/913 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,981 DEBUG Processing 120/221 atomic regions from SNP 35842 to 36443 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,012 DEBUG Processing 25/868 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,152 DEBUG Processing 9/913 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,221 DEBUG Processing 121/221 atomic regions from SNP 36143 to 36744 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,249 DEBUG Processing 26/868 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,392 DEBUG Processing 10/913 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,460 DEBUG Processing 122/221 atomic regions from SNP 36444 to 37045 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,490 DEBUG Processing 27/868 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,630 DEBUG Processing 11/913 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,701 DEBUG Processing 123/221 atomic regions from SNP 36745 to 37346 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,729 DEBUG Processing 28/868 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,868 DEBUG Processing 12/913 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,941 DEBUG Processing 124/221 atomic regions from SNP 37046 to 37647 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,970 DEBUG Processing 29/868 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,109 DEBUG Processing 13/913 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,173 DEBUG Processing 125/221 atomic regions from SNP 37347 to 37948 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,203 DEBUG Processing 30/868 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,349 DEBUG Processing 14/913 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,409 DEBUG Processing 126/221 atomic regions from SNP 37648 to 38249 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,435 DEBUG Processing 31/868 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,591 DEBUG Processing 15/913 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,648 DEBUG Processing 127/221 atomic regions from SNP 37949 to 38550 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,671 DEBUG Processing 32/868 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,840 DEBUG Processing 16/913 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,892 DEBUG Processing 128/221 atomic regions from SNP 38250 to 38851 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,914 DEBUG Processing 33/868 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,080 DEBUG Processing 17/913 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,137 DEBUG Processing 129/221 atomic regions from SNP 38551 to 39152 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,156 DEBUG Processing 34/868 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,317 DEBUG Processing 18/913 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,381 DEBUG Processing 130/221 atomic regions from SNP 38852 to 39453 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,400 DEBUG Processing 35/868 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,551 DEBUG Processing 19/913 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,620 DEBUG Processing 131/221 atomic regions from SNP 39153 to 39754 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,644 DEBUG Processing 36/868 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,785 DEBUG Processing 20/913 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,857 DEBUG Processing 132/221 atomic regions from SNP 39454 to 40055 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,886 DEBUG Processing 37/868 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,024 DEBUG Processing 21/913 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,097 DEBUG Processing 133/221 atomic regions from SNP 39755 to 40356 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,133 DEBUG Processing 38/868 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,260 DEBUG Processing 22/913 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,332 DEBUG Processing 134/221 atomic regions from SNP 40056 to 40657 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,376 DEBUG Processing 39/868 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,502 DEBUG Processing 23/913 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,574 DEBUG Processing 135/221 atomic regions from SNP 40357 to 40958 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,625 DEBUG Processing 40/868 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,741 DEBUG Processing 24/913 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,814 DEBUG Processing 136/221 atomic regions from SNP 40658 to 41259 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,873 DEBUG Processing 41/868 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,976 DEBUG Processing 25/913 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,047 DEBUG Processing 137/221 atomic regions from SNP 40959 to 41560 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,116 DEBUG Processing 42/868 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,212 DEBUG Processing 26/913 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,277 DEBUG Processing 138/221 atomic regions from SNP 41260 to 41861 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,357 DEBUG Processing 43/868 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,449 DEBUG Processing 27/913 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,507 DEBUG Processing 139/221 atomic regions from SNP 41561 to 42162 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,600 DEBUG Processing 44/868 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,694 DEBUG Processing 28/913 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,743 DEBUG Processing 140/221 atomic regions from SNP 41862 to 42463 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,845 DEBUG Processing 45/868 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,933 DEBUG Processing 29/913 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,978 DEBUG Processing 141/221 atomic regions from SNP 42163 to 42764 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,098 DEBUG Processing 46/868 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,183 DEBUG Processing 30/913 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,214 DEBUG Processing 142/221 atomic regions from SNP 42464 to 43065 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,338 DEBUG Processing 47/868 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,430 DEBUG Processing 31/913 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,449 DEBUG Processing 143/221 atomic regions from SNP 42765 to 43366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,577 DEBUG Processing 48/868 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,612 DEBUG Segmenting atomic regions: 2025-01-31 09:44:40,681 DEBUG Processing 32/913 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,691 DEBUG Processing 144/221 atomic regions from SNP 43066 to 43667 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,760 DEBUG Processing 1/1035 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,809 DEBUG Processing 49/868 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,936 DEBUG Processing 33/913 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,939 DEBUG Processing 145/221 atomic regions from SNP 43367 to 43968 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,042 DEBUG Processing 50/868 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,185 DEBUG Processing 146/221 atomic regions from SNP 43668 to 44269 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,192 DEBUG Processing 34/913 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,275 DEBUG Processing 51/868 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,427 DEBUG Processing 147/221 atomic regions from SNP 43969 to 44570 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,440 DEBUG Processing 35/913 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,508 DEBUG Processing 52/868 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,599 DEBUG Processing 2/1035 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,664 DEBUG Processing 148/221 atomic regions from SNP 44270 to 44871 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,684 DEBUG Processing 36/913 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,741 DEBUG Processing 53/868 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,867 DEBUG Processing 3/1035 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,902 DEBUG Processing 149/221 atomic regions from SNP 44571 to 45172 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,926 DEBUG Processing 37/913 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,975 DEBUG Processing 54/868 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,140 DEBUG Processing 4/1035 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,143 DEBUG Processing 150/221 atomic regions from SNP 44872 to 45473 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,182 DEBUG Processing 38/913 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,212 DEBUG Processing 55/868 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,384 DEBUG Processing 151/221 atomic regions from SNP 45173 to 45774 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,413 DEBUG Processing 5/1035 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,437 DEBUG Processing 39/913 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,448 DEBUG Processing 56/868 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,632 DEBUG Processing 152/221 atomic regions from SNP 45474 to 46075 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,686 DEBUG Processing 6/1035 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,687 DEBUG Processing 40/913 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,689 DEBUG Processing 57/868 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,890 DEBUG Processing 153/221 atomic regions from SNP 45775 to 46376 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,943 DEBUG Processing 58/868 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,946 DEBUG Processing 41/913 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,971 DEBUG Processing 7/1035 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,134 DEBUG Processing 154/221 atomic regions from SNP 46076 to 46677 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,191 DEBUG Processing 59/868 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,204 DEBUG Processing 42/913 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,241 DEBUG Processing 8/1035 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,371 DEBUG Processing 155/221 atomic regions from SNP 46377 to 46978 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,436 DEBUG Processing 60/868 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,451 DEBUG Processing 43/913 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,515 DEBUG Processing 9/1035 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,608 DEBUG Processing 156/221 atomic regions from SNP 46678 to 47279 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,681 DEBUG Processing 61/868 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,696 DEBUG Processing 44/913 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,795 DEBUG Processing 10/1035 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,842 DEBUG Processing 157/221 atomic regions from SNP 46979 to 47580 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,926 DEBUG Processing 62/868 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,942 DEBUG Processing 45/913 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,065 DEBUG Processing 11/1035 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,078 DEBUG Processing 158/221 atomic regions from SNP 47280 to 47881 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,163 DEBUG Processing 63/868 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,186 DEBUG Processing 46/913 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,315 DEBUG Processing 159/221 atomic regions from SNP 47581 to 48182 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,342 DEBUG Processing 12/1035 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,401 DEBUG Processing 64/868 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,427 DEBUG Processing 47/913 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,556 DEBUG Processing 160/221 atomic regions from SNP 47882 to 48483 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,621 DEBUG Processing 13/1035 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,641 DEBUG Processing 65/868 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,672 DEBUG Processing 48/913 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,791 DEBUG Processing 161/221 atomic regions from SNP 48183 to 48784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,887 DEBUG Processing 14/1035 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,890 DEBUG Processing 66/868 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,917 DEBUG Processing 49/913 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,023 DEBUG Processing 162/221 atomic regions from SNP 48484 to 49085 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,129 DEBUG Processing 67/868 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,158 DEBUG Processing 15/1035 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,166 DEBUG Processing 50/913 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,263 DEBUG Processing 163/221 atomic regions from SNP 48785 to 49386 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,366 DEBUG Processing 68/868 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,414 DEBUG Processing 51/913 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,439 DEBUG Processing 16/1035 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,504 DEBUG Processing 164/221 atomic regions from SNP 49086 to 49687 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,596 DEBUG Processing 69/868 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,658 DEBUG Processing 52/913 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,724 DEBUG Processing 17/1035 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,748 DEBUG Processing 165/221 atomic regions from SNP 49387 to 49988 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,825 DEBUG Processing 70/868 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,899 DEBUG Processing 53/913 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,995 DEBUG Processing 166/221 atomic regions from SNP 49688 to 50289 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,009 DEBUG Processing 18/1035 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,054 DEBUG Processing 71/868 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,137 DEBUG Processing 54/913 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,240 DEBUG Processing 167/221 atomic regions from SNP 49989 to 50590 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,293 DEBUG Processing 72/868 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,294 DEBUG Processing 19/1035 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,374 DEBUG Processing 55/913 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,482 DEBUG Processing 168/221 atomic regions from SNP 50290 to 50891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,529 DEBUG Processing 73/868 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,584 DEBUG Processing 20/1035 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,613 DEBUG Processing 56/913 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,722 DEBUG Processing 169/221 atomic regions from SNP 50591 to 51192 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,763 DEBUG Processing 74/868 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,855 DEBUG Processing 57/913 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,868 DEBUG Processing 21/1035 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,971 DEBUG Processing 170/221 atomic regions from SNP 50892 to 51493 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,997 DEBUG Processing 75/868 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,090 DEBUG Segmenting atomic regions: 2025-01-31 09:44:47,093 DEBUG Processing 58/913 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,159 DEBUG Processing 22/1035 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,235 DEBUG Processing 171/221 atomic regions from SNP 51193 to 51794 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,236 DEBUG Processing 76/868 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,248 DEBUG Processing 1/1143 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,329 DEBUG Processing 59/913 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,440 DEBUG Processing 23/1035 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,484 DEBUG Processing 77/868 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,503 DEBUG Processing 172/221 atomic regions from SNP 51494 to 52095 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,568 DEBUG Processing 60/913 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,727 DEBUG Processing 24/1035 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,736 DEBUG Processing 78/868 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,771 DEBUG Processing 173/221 atomic regions from SNP 51795 to 52396 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,803 DEBUG Processing 61/913 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,995 DEBUG Processing 79/868 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,017 DEBUG Processing 25/1035 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,032 DEBUG Processing 174/221 atomic regions from SNP 52096 to 52697 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,053 DEBUG Processing 62/913 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,092 DEBUG Processing 2/1143 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,250 DEBUG Processing 80/868 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,287 DEBUG Processing 175/221 atomic regions from SNP 52397 to 52998 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,301 DEBUG Processing 26/1035 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,303 DEBUG Processing 63/913 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,371 DEBUG Processing 3/1143 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,503 DEBUG Processing 81/868 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,540 DEBUG Processing 176/221 atomic regions from SNP 52698 to 53299 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,555 DEBUG Processing 64/913 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,582 DEBUG Processing 27/1035 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,648 DEBUG Processing 4/1143 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,756 DEBUG Processing 82/868 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,793 DEBUG Processing 177/221 atomic regions from SNP 52999 to 53600 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,811 DEBUG Processing 65/913 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,861 DEBUG Processing 28/1035 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,928 DEBUG Processing 5/1143 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,004 DEBUG Processing 83/868 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,044 DEBUG Processing 178/221 atomic regions from SNP 53300 to 53901 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,061 DEBUG Processing 66/913 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,137 DEBUG Processing 29/1035 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,212 DEBUG Processing 6/1143 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,245 DEBUG Processing 84/868 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,288 DEBUG Processing 179/221 atomic regions from SNP 53601 to 54202 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,309 DEBUG Processing 67/913 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,411 DEBUG Processing 30/1035 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,489 DEBUG Processing 85/868 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,496 DEBUG Processing 7/1143 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,534 DEBUG Processing 180/221 atomic regions from SNP 53902 to 54503 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,558 DEBUG Processing 68/913 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,679 DEBUG Processing 31/1035 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,736 DEBUG Processing 86/868 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,784 DEBUG Processing 8/1143 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,785 DEBUG Processing 181/221 atomic regions from SNP 54203 to 54804 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,807 DEBUG Processing 69/913 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,947 DEBUG Processing 32/1035 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,982 DEBUG Processing 87/868 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,043 DEBUG Processing 182/221 atomic regions from SNP 54504 to 55105 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,064 DEBUG Processing 70/913 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,078 DEBUG Processing 9/1143 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,223 DEBUG Processing 33/1035 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,230 DEBUG Processing 88/868 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,300 DEBUG Processing 183/221 atomic regions from SNP 54805 to 55406 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,320 DEBUG Processing 71/913 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,371 DEBUG Processing 10/1143 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,468 DEBUG Processing 89/868 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,491 DEBUG Processing 34/1035 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,551 DEBUG Processing 184/221 atomic regions from SNP 55106 to 55707 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,570 DEBUG Processing 72/913 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,653 DEBUG Processing 11/1143 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,708 DEBUG Processing 90/868 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,757 DEBUG Processing 35/1035 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,799 DEBUG Processing 185/221 atomic regions from SNP 55407 to 56008 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,826 DEBUG Processing 73/913 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,935 DEBUG Segmenting atomic regions: 2025-01-31 09:44:50,939 DEBUG Processing 12/1143 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,951 DEBUG Processing 91/868 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,035 DEBUG Processing 36/1035 atomic regions from SNP 10535 to 11135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,047 DEBUG Processing 186/221 atomic regions from SNP 55708 to 56309 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:51,050 DEBUG Processing 1/478 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,078 DEBUG Processing 74/913 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,191 DEBUG Processing 92/868 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,220 DEBUG Processing 13/1143 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,298 DEBUG Processing 187/221 atomic regions from SNP 56009 to 56610 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:51,304 DEBUG Processing 2/478 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,313 DEBUG Processing 37/1035 atomic regions from SNP 10835 to 11435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,334 DEBUG Processing 75/913 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,429 DEBUG Processing 93/868 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,505 DEBUG Processing 14/1143 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,550 DEBUG Processing 188/221 atomic regions from SNP 56310 to 56911 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:51,551 DEBUG Processing 3/478 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,587 DEBUG Processing 76/913 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,596 DEBUG Processing 38/1035 atomic regions from SNP 11135 to 11735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,665 DEBUG Processing 94/868 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,792 DEBUG Processing 15/1143 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,801 DEBUG Processing 189/221 atomic regions from SNP 56611 to 57212 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:51,801 DEBUG Processing 4/478 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,847 DEBUG Processing 77/913 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,879 DEBUG Processing 39/1035 atomic regions from SNP 11435 to 12035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,914 DEBUG Processing 95/868 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,061 DEBUG Processing 5/478 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,061 DEBUG Processing 190/221 atomic regions from SNP 56912 to 57513 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:52,095 DEBUG Processing 16/1143 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,118 DEBUG Processing 78/913 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,169 DEBUG Processing 96/868 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,172 DEBUG Processing 40/1035 atomic regions from SNP 11735 to 12335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,306 DEBUG Processing 6/478 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,308 DEBUG Processing 191/221 atomic regions from SNP 57213 to 57814 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:52,374 DEBUG Processing 79/913 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,386 DEBUG Processing 17/1143 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,422 DEBUG Processing 97/868 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,449 DEBUG Processing 41/1035 atomic regions from SNP 12035 to 12635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,549 DEBUG Processing 192/221 atomic regions from SNP 57514 to 58115 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:52,550 DEBUG Processing 7/478 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,626 DEBUG Processing 80/913 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,672 DEBUG Processing 98/868 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,677 DEBUG Processing 18/1143 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,726 DEBUG Processing 42/1035 atomic regions from SNP 12335 to 12935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,790 DEBUG Processing 193/221 atomic regions from SNP 57815 to 58416 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:52,797 DEBUG Processing 8/478 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,871 DEBUG Processing 81/913 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,925 DEBUG Processing 99/868 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,960 DEBUG Processing 19/1143 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,002 DEBUG Processing 43/1035 atomic regions from SNP 12635 to 13235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,041 DEBUG Processing 194/221 atomic regions from SNP 58116 to 58717 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:53,052 DEBUG Processing 9/478 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,115 DEBUG Processing 82/913 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,168 DEBUG Processing 100/868 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,246 DEBUG Processing 20/1143 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,279 DEBUG Processing 44/1035 atomic regions from SNP 12935 to 13535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,290 DEBUG Processing 195/221 atomic regions from SNP 58417 to 59018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:53,322 DEBUG Processing 10/478 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,366 DEBUG Processing 83/913 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,409 DEBUG Processing 101/868 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,531 DEBUG Processing 21/1143 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,543 DEBUG Processing 196/221 atomic regions from SNP 58718 to 59319 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:53,560 DEBUG Processing 45/1035 atomic regions from SNP 13235 to 13835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,598 DEBUG Processing 11/478 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,622 DEBUG Processing 84/913 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,656 DEBUG Processing 102/868 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,789 DEBUG Processing 197/221 atomic regions from SNP 59019 to 59620 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:53,816 DEBUG Processing 22/1143 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,838 DEBUG Processing 46/1035 atomic regions from SNP 13535 to 14135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,868 DEBUG Processing 12/478 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,879 DEBUG Processing 85/913 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,909 DEBUG Processing 103/868 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,026 DEBUG Processing 198/221 atomic regions from SNP 59320 to 59921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:54,096 DEBUG Processing 23/1143 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,114 DEBUG Processing 47/1035 atomic regions from SNP 13835 to 14435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,137 DEBUG Processing 86/913 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,137 DEBUG Processing 13/478 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,168 DEBUG Processing 104/868 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,262 DEBUG Processing 199/221 atomic regions from SNP 59621 to 60222 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:54,380 DEBUG Processing 24/1143 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,393 DEBUG Processing 48/1035 atomic regions from SNP 14135 to 14735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,395 DEBUG Processing 87/913 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,409 DEBUG Processing 14/478 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,427 DEBUG Processing 105/868 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,507 DEBUG Processing 200/221 atomic regions from SNP 59922 to 60523 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:54,649 DEBUG Processing 88/913 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,667 DEBUG Processing 25/1143 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,672 DEBUG Processing 49/1035 atomic regions from SNP 14435 to 15035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,675 DEBUG Processing 15/478 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,689 DEBUG Processing 106/868 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,752 DEBUG Processing 201/221 atomic regions from SNP 60223 to 60824 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:54,899 DEBUG Processing 89/913 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,936 DEBUG Processing 16/478 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,946 DEBUG Processing 107/868 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,953 DEBUG Processing 50/1035 atomic regions from SNP 14735 to 15335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,963 DEBUG Processing 26/1143 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,005 DEBUG Processing 202/221 atomic regions from SNP 60524 to 61125 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:55,144 DEBUG Processing 90/913 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,199 DEBUG Processing 17/478 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:55,202 DEBUG Processing 108/868 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,241 DEBUG Processing 51/1035 atomic regions from SNP 15035 to 15635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,260 DEBUG Processing 203/221 atomic regions from SNP 60825 to 61426 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:55,264 DEBUG Processing 27/1143 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,385 DEBUG Processing 91/913 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,456 DEBUG Processing 18/478 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:55,460 DEBUG Processing 109/868 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,516 DEBUG Processing 204/221 atomic regions from SNP 61126 to 61727 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:55,536 DEBUG Processing 52/1035 atomic regions from SNP 15335 to 15935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,566 DEBUG Processing 28/1143 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,622 DEBUG Processing 92/913 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,702 DEBUG Processing 19/478 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:55,719 DEBUG Processing 110/868 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,770 DEBUG Processing 205/221 atomic regions from SNP 61427 to 62028 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:55,824 DEBUG Processing 53/1035 atomic regions from SNP 15635 to 16235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,862 DEBUG Processing 29/1143 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,870 DEBUG Processing 93/913 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,946 DEBUG Processing 20/478 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:55,972 DEBUG Processing 111/868 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,024 DEBUG Processing 206/221 atomic regions from SNP 61728 to 62329 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:56,100 DEBUG Processing 54/1035 atomic regions from SNP 15935 to 16535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,114 DEBUG Processing 94/913 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,150 DEBUG Processing 30/1143 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,183 DEBUG Processing 21/478 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:56,218 DEBUG Processing 112/868 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,278 DEBUG Processing 207/221 atomic regions from SNP 62029 to 62630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:56,360 DEBUG Processing 95/913 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,372 DEBUG Processing 55/1035 atomic regions from SNP 16235 to 16835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,423 DEBUG Processing 22/478 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:56,433 DEBUG Processing 31/1143 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,468 DEBUG Processing 113/868 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,530 DEBUG Processing 208/221 atomic regions from SNP 62330 to 62931 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:56,605 DEBUG Processing 96/913 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,642 DEBUG Processing 56/1035 atomic regions from SNP 16535 to 17135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,655 DEBUG Processing 23/478 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:56,716 DEBUG Processing 114/868 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,719 DEBUG Processing 32/1143 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,784 DEBUG Processing 209/221 atomic regions from SNP 62631 to 63232 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:56,854 DEBUG Processing 97/913 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,891 DEBUG Processing 24/478 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:56,914 DEBUG Processing 57/1035 atomic regions from SNP 16835 to 17435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,990 DEBUG Processing 115/868 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,004 DEBUG Processing 33/1143 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,034 DEBUG Processing 210/221 atomic regions from SNP 62932 to 63533 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:57,106 DEBUG Processing 98/913 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,129 DEBUG Processing 25/478 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:57,181 DEBUG Processing 58/1035 atomic regions from SNP 17135 to 17735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,263 DEBUG Processing 116/868 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,284 DEBUG Processing 211/221 atomic regions from SNP 63233 to 63834 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:57,293 DEBUG Processing 34/1143 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,361 DEBUG Processing 99/913 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,371 DEBUG Processing 26/478 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:57,449 DEBUG Processing 59/1035 atomic regions from SNP 17435 to 18035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,523 DEBUG Processing 117/868 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,530 DEBUG Processing 212/221 atomic regions from SNP 63534 to 64135 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:57,580 DEBUG Processing 35/1143 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,613 DEBUG Processing 100/913 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,615 DEBUG Processing 27/478 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:57,715 DEBUG Processing 60/1035 atomic regions from SNP 17735 to 18335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,778 DEBUG Processing 213/221 atomic regions from SNP 63835 to 64436 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:57,789 DEBUG Processing 118/868 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,858 DEBUG Processing 28/478 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:57,865 DEBUG Processing 101/913 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,868 DEBUG Processing 36/1143 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,983 DEBUG Processing 61/1035 atomic regions from SNP 18035 to 18635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,028 DEBUG Processing 214/221 atomic regions from SNP 64136 to 64737 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:58,063 DEBUG Processing 119/868 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,101 DEBUG Processing 29/478 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:58,113 DEBUG Processing 102/913 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,150 DEBUG Processing 37/1143 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,252 DEBUG Processing 62/1035 atomic regions from SNP 18335 to 18935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,274 DEBUG Processing 215/221 atomic regions from SNP 64437 to 65038 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:58,332 DEBUG Processing 120/868 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,341 DEBUG Processing 30/478 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:58,360 DEBUG Processing 103/913 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,436 DEBUG Processing 38/1143 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,526 DEBUG Processing 63/1035 atomic regions from SNP 18635 to 19235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,535 DEBUG Processing 216/221 atomic regions from SNP 64738 to 65339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:58,586 DEBUG Processing 121/868 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,588 DEBUG Processing 31/478 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:58,613 DEBUG Processing 104/913 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,713 DEBUG Processing 39/1143 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,806 DEBUG Processing 64/1035 atomic regions from SNP 18935 to 19535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,811 DEBUG Processing 217/221 atomic regions from SNP 65039 to 65640 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:58,836 DEBUG Processing 32/478 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:58,840 DEBUG Processing 122/868 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,867 DEBUG Processing 105/913 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,998 DEBUG Processing 40/1143 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,090 DEBUG Processing 65/1035 atomic regions from SNP 19235 to 19835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,095 DEBUG Processing 33/478 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:59,096 DEBUG Processing 218/221 atomic regions from SNP 65340 to 65941 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:59,112 DEBUG Processing 123/868 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,132 DEBUG Processing 106/913 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,273 DEBUG Processing 41/1143 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,348 DEBUG Processing 34/478 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:59,371 DEBUG Processing 124/868 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,373 DEBUG Processing 219/221 atomic regions from SNP 65641 to 66242 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:59,378 DEBUG Processing 66/1035 atomic regions from SNP 19535 to 20135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,392 DEBUG Processing 107/913 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,551 DEBUG Processing 42/1143 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,600 DEBUG Processing 35/478 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:59,630 DEBUG Processing 125/868 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,641 DEBUG Processing 220/221 atomic regions from SNP 65942 to 66543 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:59,655 DEBUG Processing 108/913 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,665 DEBUG Processing 67/1035 atomic regions from SNP 19835 to 20435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,822 DEBUG Processing 43/1143 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,848 DEBUG Processing 36/478 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:59,892 DEBUG Processing 126/868 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,919 DEBUG Processing 221/221 atomic regions from SNP 66243 to 66844 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:59,923 DEBUG Processing 109/913 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,959 DEBUG Processing 68/1035 atomic regions from SNP 20135 to 20735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,080 DEBUG Unique SNPs positions in subchromosome 1: 66845 2025-01-31 09:45:00,108 DEBUG Processing 44/1143 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,110 DEBUG Processing 37/478 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:00,144 DEBUG Processing 127/868 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,182 DEBUG Processing 110/913 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,241 DEBUG Processing 69/1035 atomic regions from SNP 20435 to 21035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,248 DEBUG Subchromosome time: 62.454693217994645, subchromosome SNPs: 66845 2025-01-31 09:45:00,301 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:00,356 DEBUG Processing 38/478 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:00,393 DEBUG Processing 45/1143 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,394 DEBUG Processing 128/868 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,431 DEBUG Processing 111/913 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,513 DEBUG Processing 70/1035 atomic regions from SNP 20735 to 21335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,602 DEBUG Processing 39/478 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:00,646 DEBUG Processing 129/868 atomic regions from SNP 38528 to 39129 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,681 DEBUG Processing 112/913 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,689 DEBUG Processing 46/1143 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,781 DEBUG Processing 71/1035 atomic regions from SNP 21035 to 21635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,850 DEBUG Processing 40/478 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:00,902 DEBUG Processing 130/868 atomic regions from SNP 38829 to 39430 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,935 DEBUG Processing 113/913 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,981 DEBUG Processing 47/1143 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,064 DEBUG Processing 72/1035 atomic regions from SNP 21335 to 21935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,105 DEBUG Processing 41/478 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:01,161 DEBUG Processing 131/868 atomic regions from SNP 39130 to 39731 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,193 DEBUG Processing 114/913 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,268 DEBUG Processing 48/1143 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,334 DEBUG Processing 73/1035 atomic regions from SNP 21635 to 22235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,350 DEBUG Processing 42/478 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:01,410 DEBUG Processing 132/868 atomic regions from SNP 39431 to 40032 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,444 DEBUG Processing 115/913 atomic regions from SNP 34314 to 34915 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,545 DEBUG Processing 49/1143 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,592 DEBUG Processing 43/478 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:01,607 DEBUG Processing 74/1035 atomic regions from SNP 21935 to 22535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,661 DEBUG Processing 133/868 atomic regions from SNP 39732 to 40333 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,697 DEBUG Processing 116/913 atomic regions from SNP 34615 to 35216 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,826 DEBUG Processing 44/478 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:01,827 DEBUG Processing 50/1143 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,880 DEBUG Processing 75/1035 atomic regions from SNP 22235 to 22835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,923 DEBUG Processing 134/868 atomic regions from SNP 40033 to 40634 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,956 DEBUG Processing 117/913 atomic regions from SNP 34916 to 35517 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,058 DEBUG Processing 45/478 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:02,107 DEBUG Processing 51/1143 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,158 DEBUG Processing 76/1035 atomic regions from SNP 22535 to 23135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,198 DEBUG Processing 135/868 atomic regions from SNP 40334 to 40935 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,221 DEBUG Processing 118/913 atomic regions from SNP 35217 to 35818 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,291 DEBUG Processing 46/478 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:02,384 DEBUG Processing 52/1143 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,427 DEBUG Processing 77/1035 atomic regions from SNP 22835 to 23435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,452 DEBUG Processing 136/868 atomic regions from SNP 40635 to 41236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,481 DEBUG Processing 119/913 atomic regions from SNP 35518 to 36119 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,538 DEBUG Processing 47/478 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:02,666 DEBUG Processing 53/1143 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,702 DEBUG Processing 78/1035 atomic regions from SNP 23135 to 23735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,718 DEBUG Processing 137/868 atomic regions from SNP 40936 to 41537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,740 DEBUG Processing 120/913 atomic regions from SNP 35819 to 36420 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,784 DEBUG Processing 48/478 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:02,946 DEBUG Processing 54/1143 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,970 DEBUG Processing 138/868 atomic regions from SNP 41237 to 41838 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,971 DEBUG Processing 79/1035 atomic regions from SNP 23435 to 24035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,994 DEBUG Processing 121/913 atomic regions from SNP 36120 to 36721 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,037 DEBUG Processing 49/478 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:03,217 DEBUG Processing 139/868 atomic regions from SNP 41538 to 42139 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,227 DEBUG Processing 55/1143 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,247 DEBUG Processing 80/1035 atomic regions from SNP 23735 to 24335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,247 DEBUG Processing 122/913 atomic regions from SNP 36421 to 37022 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,282 DEBUG Processing 50/478 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:03,462 DEBUG Processing 140/868 atomic regions from SNP 41839 to 42440 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,499 DEBUG Processing 123/913 atomic regions from SNP 36722 to 37323 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,513 DEBUG Processing 56/1143 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,523 DEBUG Processing 81/1035 atomic regions from SNP 24035 to 24635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,529 DEBUG Processing 51/478 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:03,705 DEBUG Processing 141/868 atomic regions from SNP 42140 to 42741 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,751 DEBUG Processing 124/913 atomic regions from SNP 37023 to 37624 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,779 DEBUG Processing 52/478 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:03,802 DEBUG Processing 57/1143 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,807 DEBUG Processing 82/1035 atomic regions from SNP 24335 to 24935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,939 DEBUG Processing 142/868 atomic regions from SNP 42441 to 43042 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,997 DEBUG Processing 125/913 atomic regions from SNP 37324 to 37925 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,025 DEBUG Processing 53/478 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:04,086 DEBUG Processing 83/1035 atomic regions from SNP 24635 to 25235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,095 DEBUG Processing 58/1143 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,173 DEBUG Processing 143/868 atomic regions from SNP 42742 to 43343 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,241 DEBUG Processing 126/913 atomic regions from SNP 37625 to 38226 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,266 DEBUG Processing 54/478 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:04,365 DEBUG Processing 84/1035 atomic regions from SNP 24935 to 25535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,388 DEBUG Processing 59/1143 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,418 DEBUG Processing 144/868 atomic regions from SNP 43043 to 43644 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,485 DEBUG Processing 127/913 atomic regions from SNP 37926 to 38527 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,505 DEBUG Processing 55/478 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:04,637 DEBUG Processing 85/1035 atomic regions from SNP 25235 to 25835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,664 DEBUG Processing 145/868 atomic regions from SNP 43344 to 43945 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,671 DEBUG Processing 60/1143 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,732 DEBUG Processing 128/913 atomic regions from SNP 38227 to 38828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,742 DEBUG Processing 56/478 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:04,902 DEBUG Processing 86/1035 atomic regions from SNP 25535 to 26135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,908 DEBUG Processing 146/868 atomic regions from SNP 43645 to 44246 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,951 DEBUG Processing 61/1143 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,984 DEBUG Processing 129/913 atomic regions from SNP 38528 to 39129 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,986 DEBUG Processing 57/478 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:05,151 DEBUG Processing 147/868 atomic regions from SNP 43946 to 44547 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,170 DEBUG Processing 87/1035 atomic regions from SNP 25835 to 26435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,236 DEBUG Processing 62/1143 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,236 DEBUG Processing 58/478 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:05,239 DEBUG Processing 130/913 atomic regions from SNP 38829 to 39430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,387 DEBUG Processing 148/868 atomic regions from SNP 44247 to 44848 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,430 DEBUG Processing 88/1035 atomic regions from SNP 26135 to 26735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,484 DEBUG Processing 59/478 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:05,497 DEBUG Processing 131/913 atomic regions from SNP 39130 to 39731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,525 DEBUG Processing 63/1143 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,630 DEBUG Processing 149/868 atomic regions from SNP 44548 to 45149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,696 DEBUG Processing 89/1035 atomic regions from SNP 26435 to 27035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,726 DEBUG Processing 60/478 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:05,752 DEBUG Processing 132/913 atomic regions from SNP 39431 to 40032 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,824 DEBUG Processing 64/1143 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,891 DEBUG Processing 150/868 atomic regions from SNP 44849 to 45450 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,963 DEBUG Processing 61/478 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:05,971 DEBUG Processing 90/1035 atomic regions from SNP 26735 to 27335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,000 DEBUG Processing 133/913 atomic regions from SNP 39732 to 40333 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,118 DEBUG Processing 65/1143 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,163 DEBUG Processing 151/868 atomic regions from SNP 45150 to 45751 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,192 DEBUG Processing 62/478 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:06,234 DEBUG Processing 91/1035 atomic regions from SNP 27035 to 27635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,239 DEBUG Processing 134/913 atomic regions from SNP 40033 to 40634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,413 DEBUG Processing 66/1143 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,431 DEBUG Processing 63/478 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:06,439 DEBUG Processing 152/868 atomic regions from SNP 45451 to 46052 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,483 DEBUG Processing 135/913 atomic regions from SNP 40334 to 40935 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,503 DEBUG Processing 92/1035 atomic regions from SNP 27335 to 27935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,674 DEBUG Processing 64/478 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:06,697 DEBUG Processing 67/1143 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,710 DEBUG Processing 153/868 atomic regions from SNP 45752 to 46353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,731 DEBUG Processing 136/913 atomic regions from SNP 40635 to 41236 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,777 DEBUG Processing 93/1035 atomic regions from SNP 27635 to 28235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,918 DEBUG Processing 65/478 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:06,990 DEBUG Processing 137/913 atomic regions from SNP 40936 to 41537 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,990 DEBUG Processing 68/1143 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,991 DEBUG Processing 154/868 atomic regions from SNP 46053 to 46654 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,064 DEBUG Processing 94/1035 atomic regions from SNP 27935 to 28535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,149 DEBUG Processing 66/478 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:07,245 DEBUG Processing 138/913 atomic regions from SNP 41237 to 41838 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,271 DEBUG Processing 155/868 atomic regions from SNP 46354 to 46955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,280 DEBUG Processing 69/1143 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,349 DEBUG Processing 95/1035 atomic regions from SNP 28235 to 28835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,375 DEBUG Processing 67/478 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:07,495 DEBUG Processing 139/913 atomic regions from SNP 41538 to 42139 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,548 DEBUG Processing 156/868 atomic regions from SNP 46655 to 47256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,574 DEBUG Processing 70/1143 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,614 DEBUG Processing 68/478 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:07,637 DEBUG Processing 96/1035 atomic regions from SNP 28535 to 29135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,734 DEBUG Processing 140/913 atomic regions from SNP 41839 to 42440 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,805 DEBUG Processing 157/868 atomic regions from SNP 46956 to 47557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,862 DEBUG Processing 69/478 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:07,867 DEBUG Processing 71/1143 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,913 DEBUG Processing 97/1035 atomic regions from SNP 28835 to 29435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,968 DEBUG Processing 141/913 atomic regions from SNP 42140 to 42741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,059 DEBUG Processing 158/868 atomic regions from SNP 47257 to 47858 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,128 DEBUG Processing 70/478 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:08,160 DEBUG Processing 72/1143 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,188 DEBUG Processing 98/1035 atomic regions from SNP 29135 to 29735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,210 DEBUG Processing 142/913 atomic regions from SNP 42441 to 43042 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,300 DEBUG Processing 159/868 atomic regions from SNP 47558 to 48159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,399 DEBUG Processing 71/478 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:08,446 DEBUG Processing 73/1143 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,461 DEBUG Processing 143/913 atomic regions from SNP 42742 to 43343 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,462 DEBUG Processing 99/1035 atomic regions from SNP 29435 to 30035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,542 DEBUG Processing 160/868 atomic regions from SNP 47859 to 48460 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,658 DEBUG Processing 72/478 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:08,715 DEBUG Processing 144/913 atomic regions from SNP 43043 to 43644 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,732 DEBUG Processing 74/1143 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,740 DEBUG Processing 100/1035 atomic regions from SNP 29735 to 30335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,810 DEBUG Processing 161/868 atomic regions from SNP 48160 to 48761 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,917 DEBUG Processing 73/478 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:08,964 DEBUG Processing 145/913 atomic regions from SNP 43344 to 43945 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,018 DEBUG Processing 75/1143 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,018 DEBUG Processing 101/1035 atomic regions from SNP 30035 to 30635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,077 DEBUG Processing 162/868 atomic regions from SNP 48461 to 49062 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,154 DEBUG Processing 74/478 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:09,207 DEBUG Processing 146/913 atomic regions from SNP 43645 to 44246 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,304 DEBUG Processing 102/1035 atomic regions from SNP 30335 to 30935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,313 DEBUG Processing 76/1143 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,336 DEBUG Processing 163/868 atomic regions from SNP 48762 to 49363 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,386 DEBUG Processing 75/478 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:09,444 DEBUG Processing 147/913 atomic regions from SNP 43946 to 44547 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,588 DEBUG Processing 103/1035 atomic regions from SNP 30635 to 31235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,593 DEBUG Processing 164/868 atomic regions from SNP 49063 to 49664 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,605 DEBUG Processing 77/1143 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,632 DEBUG Processing 76/478 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:09,681 DEBUG Processing 148/913 atomic regions from SNP 44247 to 44848 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,861 DEBUG Processing 165/868 atomic regions from SNP 49364 to 49965 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,873 DEBUG Processing 104/1035 atomic regions from SNP 30935 to 31535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,888 DEBUG Processing 77/478 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:09,903 DEBUG Processing 78/1143 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,935 DEBUG Processing 149/913 atomic regions from SNP 44548 to 45149 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,132 DEBUG Processing 166/868 atomic regions from SNP 49665 to 50266 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,144 DEBUG Processing 78/478 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:10,161 DEBUG Processing 105/1035 atomic regions from SNP 31235 to 31835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,197 DEBUG Processing 150/913 atomic regions from SNP 44849 to 45450 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,199 DEBUG Processing 79/1143 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,389 DEBUG Processing 79/478 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:10,396 DEBUG Processing 167/868 atomic regions from SNP 49966 to 50567 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,450 DEBUG Processing 106/1035 atomic regions from SNP 31535 to 32135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,464 DEBUG Processing 151/913 atomic regions from SNP 45150 to 45751 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,502 DEBUG Processing 80/1143 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,622 DEBUG Processing 80/478 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:10,655 DEBUG Processing 168/868 atomic regions from SNP 50267 to 50868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,724 DEBUG Processing 152/913 atomic regions from SNP 45451 to 46052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,731 DEBUG Processing 107/1035 atomic regions from SNP 31835 to 32435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,798 DEBUG Processing 81/1143 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,848 DEBUG Processing 81/478 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:10,911 DEBUG Processing 169/868 atomic regions from SNP 50568 to 51169 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,974 DEBUG Processing 153/913 atomic regions from SNP 45752 to 46353 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,010 DEBUG Processing 108/1035 atomic regions from SNP 32135 to 32735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,086 DEBUG Processing 82/478 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:11,092 DEBUG Processing 82/1143 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,172 DEBUG Processing 170/868 atomic regions from SNP 50869 to 51470 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,216 DEBUG Processing 154/913 atomic regions from SNP 46053 to 46654 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,284 DEBUG Processing 109/1035 atomic regions from SNP 32435 to 33035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,339 DEBUG Processing 83/478 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:11,387 DEBUG Processing 83/1143 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,437 DEBUG Processing 171/868 atomic regions from SNP 51170 to 51771 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,454 DEBUG Processing 155/913 atomic regions from SNP 46354 to 46955 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,559 DEBUG Processing 110/1035 atomic regions from SNP 32735 to 33335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,590 DEBUG Processing 84/478 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:11,676 DEBUG Processing 84/1143 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,683 DEBUG Processing 172/868 atomic regions from SNP 51471 to 52072 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,702 DEBUG Processing 156/913 atomic regions from SNP 46655 to 47256 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,829 DEBUG Processing 111/1035 atomic regions from SNP 33035 to 33635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,859 DEBUG Processing 85/478 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:11,932 DEBUG Processing 173/868 atomic regions from SNP 51772 to 52373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,963 DEBUG Processing 157/913 atomic regions from SNP 46956 to 47557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,964 DEBUG Processing 85/1143 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,096 DEBUG Processing 112/1035 atomic regions from SNP 33335 to 33935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,103 DEBUG Processing 86/478 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:12,208 DEBUG Processing 174/868 atomic regions from SNP 52073 to 52674 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,221 DEBUG Processing 158/913 atomic regions from SNP 47257 to 47858 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,249 DEBUG Processing 86/1143 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,348 DEBUG Processing 87/478 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:12,360 DEBUG Processing 113/1035 atomic regions from SNP 33635 to 34235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,471 DEBUG Processing 175/868 atomic regions from SNP 52374 to 52975 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,485 DEBUG Processing 159/913 atomic regions from SNP 47558 to 48159 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,535 DEBUG Processing 87/1143 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,591 DEBUG Processing 88/478 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:12,627 DEBUG Processing 114/1035 atomic regions from SNP 33935 to 34535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,739 DEBUG Processing 176/868 atomic regions from SNP 52675 to 53276 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,742 DEBUG Processing 160/913 atomic regions from SNP 47859 to 48460 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,825 DEBUG Processing 88/1143 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,830 DEBUG Processing 89/478 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:12,890 DEBUG Processing 115/1035 atomic regions from SNP 34235 to 34835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,994 DEBUG Processing 161/913 atomic regions from SNP 48160 to 48761 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,003 DEBUG Processing 177/868 atomic regions from SNP 52976 to 53577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,086 DEBUG Processing 90/478 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:13,110 DEBUG Processing 89/1143 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,159 DEBUG Processing 116/1035 atomic regions from SNP 34535 to 35135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,240 DEBUG Processing 162/913 atomic regions from SNP 48461 to 49062 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,260 DEBUG Processing 178/868 atomic regions from SNP 53277 to 53878 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,340 DEBUG Processing 91/478 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:13,405 DEBUG Processing 90/1143 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,435 DEBUG Processing 117/1035 atomic regions from SNP 34835 to 35435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,486 DEBUG Processing 163/913 atomic regions from SNP 48762 to 49363 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,539 DEBUG Processing 179/868 atomic regions from SNP 53578 to 54179 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,597 DEBUG Processing 92/478 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:13,689 DEBUG Processing 91/1143 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,704 DEBUG Processing 118/1035 atomic regions from SNP 35135 to 35735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,727 DEBUG Processing 164/913 atomic regions from SNP 49063 to 49664 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,806 DEBUG Processing 180/868 atomic regions from SNP 53879 to 54480 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,857 DEBUG Processing 93/478 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:13,984 DEBUG Processing 165/913 atomic regions from SNP 49364 to 49965 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,985 DEBUG Processing 92/1143 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,986 DEBUG Processing 119/1035 atomic regions from SNP 35435 to 36035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,079 DEBUG Processing 181/868 atomic regions from SNP 54180 to 54781 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,113 DEBUG Processing 94/478 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:14,235 DEBUG Processing 166/913 atomic regions from SNP 49665 to 50266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,261 DEBUG Processing 120/1035 atomic regions from SNP 35735 to 36335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,270 DEBUG Processing 93/1143 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,344 DEBUG Processing 182/868 atomic regions from SNP 54481 to 55082 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,363 DEBUG Processing 95/478 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:14,490 DEBUG Processing 167/913 atomic regions from SNP 49966 to 50567 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,537 DEBUG Processing 121/1035 atomic regions from SNP 36035 to 36635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,558 DEBUG Processing 94/1143 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,609 DEBUG Processing 183/868 atomic regions from SNP 54782 to 55383 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,613 DEBUG Processing 96/478 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:14,746 DEBUG Processing 168/913 atomic regions from SNP 50267 to 50868 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,808 DEBUG Processing 122/1035 atomic regions from SNP 36335 to 36935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,839 DEBUG Processing 95/1143 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,858 DEBUG Processing 97/478 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:14,870 DEBUG Processing 184/868 atomic regions from SNP 55083 to 55684 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,996 DEBUG Processing 169/913 atomic regions from SNP 50568 to 51169 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,077 DEBUG Processing 123/1035 atomic regions from SNP 36635 to 37235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,109 DEBUG Processing 98/478 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:15,123 DEBUG Processing 96/1143 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,123 DEBUG Processing 185/868 atomic regions from SNP 55384 to 55985 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,243 DEBUG Processing 170/913 atomic regions from SNP 50869 to 51470 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,346 DEBUG Processing 124/1035 atomic regions from SNP 36935 to 37535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,363 DEBUG Processing 99/478 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:15,381 DEBUG Processing 186/868 atomic regions from SNP 55685 to 56286 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,410 DEBUG Processing 97/1143 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,490 DEBUG Processing 171/913 atomic regions from SNP 51170 to 51771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,618 DEBUG Processing 100/478 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:15,619 DEBUG Processing 125/1035 atomic regions from SNP 37235 to 37835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,641 DEBUG Processing 187/868 atomic regions from SNP 55986 to 56587 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,701 DEBUG Processing 98/1143 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,736 DEBUG Processing 172/913 atomic regions from SNP 51471 to 52072 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,868 DEBUG Processing 101/478 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:15,891 DEBUG Processing 126/1035 atomic regions from SNP 37535 to 38135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,909 DEBUG Processing 188/868 atomic regions from SNP 56287 to 56888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,984 DEBUG Processing 173/913 atomic regions from SNP 51772 to 52373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,990 DEBUG Processing 99/1143 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,120 DEBUG Processing 102/478 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:16,167 DEBUG Processing 127/1035 atomic regions from SNP 37835 to 38435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,181 DEBUG Processing 189/868 atomic regions from SNP 56588 to 57189 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,237 DEBUG Processing 174/913 atomic regions from SNP 52073 to 52674 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,276 DEBUG Processing 100/1143 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,373 DEBUG Processing 103/478 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:16,456 DEBUG Processing 190/868 atomic regions from SNP 56889 to 57490 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,456 DEBUG Processing 128/1035 atomic regions from SNP 38135 to 38735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,483 DEBUG Processing 175/913 atomic regions from SNP 52374 to 52975 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,556 DEBUG Processing 101/1143 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,615 DEBUG Processing 104/478 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:16,714 DEBUG Processing 191/868 atomic regions from SNP 57190 to 57791 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,739 DEBUG Processing 129/1035 atomic regions from SNP 38435 to 39035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,745 DEBUG Processing 176/913 atomic regions from SNP 52675 to 53276 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,840 DEBUG Processing 102/1143 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,858 DEBUG Processing 105/478 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:16,958 DEBUG Processing 192/868 atomic regions from SNP 57491 to 58092 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,991 DEBUG Processing 177/913 atomic regions from SNP 52976 to 53577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,027 DEBUG Processing 130/1035 atomic regions from SNP 38735 to 39335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,103 DEBUG Processing 106/478 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:17,127 DEBUG Processing 103/1143 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,200 DEBUG Processing 193/868 atomic regions from SNP 57792 to 58393 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,234 DEBUG Processing 178/913 atomic regions from SNP 53277 to 53878 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,323 DEBUG Processing 131/1035 atomic regions from SNP 39035 to 39635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,350 DEBUG Processing 107/478 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:17,417 DEBUG Processing 104/1143 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,448 DEBUG Processing 194/868 atomic regions from SNP 58093 to 58694 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,479 DEBUG Processing 179/913 atomic regions from SNP 53578 to 54179 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,592 DEBUG Processing 108/478 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:17,625 DEBUG Processing 132/1035 atomic regions from SNP 39335 to 39935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,695 DEBUG Processing 195/868 atomic regions from SNP 58394 to 58995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,706 DEBUG Processing 105/1143 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,723 DEBUG Processing 180/913 atomic regions from SNP 53879 to 54480 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,827 DEBUG Processing 109/478 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:17,926 DEBUG Processing 133/1035 atomic regions from SNP 39635 to 40235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,948 DEBUG Processing 196/868 atomic regions from SNP 58695 to 59296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,972 DEBUG Processing 181/913 atomic regions from SNP 54180 to 54781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,994 DEBUG Processing 106/1143 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,072 DEBUG Processing 110/478 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:18,198 DEBUG Processing 197/868 atomic regions from SNP 58996 to 59597 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,221 DEBUG Processing 134/1035 atomic regions from SNP 39935 to 40535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,223 DEBUG Processing 182/913 atomic regions from SNP 54481 to 55082 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,282 DEBUG Processing 107/1143 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,337 DEBUG Processing 111/478 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:18,442 DEBUG Processing 198/868 atomic regions from SNP 59297 to 59898 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,467 DEBUG Processing 183/913 atomic regions from SNP 54782 to 55383 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,516 DEBUG Processing 135/1035 atomic regions from SNP 40235 to 40835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,580 DEBUG Processing 108/1143 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,601 DEBUG Processing 112/478 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:18,692 DEBUG Processing 199/868 atomic regions from SNP 59598 to 60199 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,708 DEBUG Processing 184/913 atomic regions from SNP 55083 to 55684 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,806 DEBUG Processing 136/1035 atomic regions from SNP 40535 to 41135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,864 DEBUG Processing 113/478 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:18,870 DEBUG Processing 109/1143 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,947 DEBUG Processing 200/868 atomic regions from SNP 59899 to 60500 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,950 DEBUG Processing 185/913 atomic regions from SNP 55384 to 55985 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,104 DEBUG Processing 137/1035 atomic regions from SNP 40835 to 41435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,116 DEBUG Processing 114/478 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:19,164 DEBUG Processing 110/1143 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,197 DEBUG Processing 186/913 atomic regions from SNP 55685 to 56286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,210 DEBUG Processing 201/868 atomic regions from SNP 60200 to 60801 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,364 DEBUG Processing 115/478 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:19,410 DEBUG Processing 138/1035 atomic regions from SNP 41135 to 41735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,452 DEBUG Processing 187/913 atomic regions from SNP 55986 to 56587 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,458 DEBUG Processing 111/1143 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,464 DEBUG Processing 202/868 atomic regions from SNP 60501 to 61102 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,613 DEBUG Processing 116/478 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:19,709 DEBUG Processing 188/913 atomic regions from SNP 56287 to 56888 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,714 DEBUG Processing 203/868 atomic regions from SNP 60802 to 61403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,716 DEBUG Processing 139/1035 atomic regions from SNP 41435 to 42035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,752 DEBUG Processing 112/1143 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,853 DEBUG Processing 117/478 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:19,962 DEBUG Processing 189/913 atomic regions from SNP 56588 to 57189 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,962 DEBUG Processing 204/868 atomic regions from SNP 61103 to 61704 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,026 DEBUG Processing 140/1035 atomic regions from SNP 41735 to 42335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,043 DEBUG Processing 113/1143 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,090 DEBUG Processing 118/478 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:20,206 DEBUG Processing 205/868 atomic regions from SNP 61404 to 62005 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,210 DEBUG Processing 190/913 atomic regions from SNP 56889 to 57490 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,326 DEBUG Processing 141/1035 atomic regions from SNP 42035 to 42635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,336 DEBUG Processing 119/478 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:20,336 DEBUG Processing 114/1143 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,451 DEBUG Processing 206/868 atomic regions from SNP 61705 to 62306 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,460 DEBUG Processing 191/913 atomic regions from SNP 57190 to 57791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,588 DEBUG Processing 120/478 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:20,615 DEBUG Processing 142/1035 atomic regions from SNP 42335 to 42935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,624 DEBUG Processing 115/1143 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,689 DEBUG Processing 207/868 atomic regions from SNP 62006 to 62607 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,702 DEBUG Processing 192/913 atomic regions from SNP 57491 to 58092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,833 DEBUG Processing 121/478 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:20,914 DEBUG Processing 116/1143 atomic regions from SNP 34615 to 35216 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,918 DEBUG Processing 143/1035 atomic regions from SNP 42635 to 43235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,935 DEBUG Processing 208/868 atomic regions from SNP 62307 to 62908 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,950 DEBUG Processing 193/913 atomic regions from SNP 57792 to 58392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,076 DEBUG Processing 122/478 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:21,179 DEBUG Processing 209/868 atomic regions from SNP 62608 to 63209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,196 DEBUG Processing 117/1143 atomic regions from SNP 34916 to 35517 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,197 DEBUG Processing 194/913 atomic regions from SNP 58092 to 58692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,213 DEBUG Processing 144/1035 atomic regions from SNP 42935 to 43535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,317 DEBUG Processing 123/478 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:21,423 DEBUG Processing 210/868 atomic regions from SNP 62909 to 63510 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,450 DEBUG Processing 195/913 atomic regions from SNP 58392 to 58992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,476 DEBUG Processing 118/1143 atomic regions from SNP 35217 to 35818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,511 DEBUG Processing 145/1035 atomic regions from SNP 43235 to 43835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,556 DEBUG Processing 124/478 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:21,666 DEBUG Processing 211/868 atomic regions from SNP 63210 to 63811 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,695 DEBUG Processing 196/913 atomic regions from SNP 58692 to 59292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,752 DEBUG Processing 119/1143 atomic regions from SNP 35518 to 36119 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,795 DEBUG Processing 125/478 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:21,810 DEBUG Processing 146/1035 atomic regions from SNP 43535 to 44135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,907 DEBUG Processing 212/868 atomic regions from SNP 63511 to 64112 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,940 DEBUG Processing 197/913 atomic regions from SNP 58992 to 59592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,034 DEBUG Processing 120/1143 atomic regions from SNP 35819 to 36420 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,037 DEBUG Processing 126/478 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:22,112 DEBUG Processing 147/1035 atomic regions from SNP 43835 to 44435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,149 DEBUG Processing 213/868 atomic regions from SNP 63812 to 64413 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,183 DEBUG Processing 198/913 atomic regions from SNP 59292 to 59892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,275 DEBUG Processing 127/478 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:22,312 DEBUG Processing 121/1143 atomic regions from SNP 36120 to 36721 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,394 DEBUG Processing 214/868 atomic regions from SNP 64113 to 64714 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,413 DEBUG Processing 148/1035 atomic regions from SNP 44135 to 44735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,430 DEBUG Processing 199/913 atomic regions from SNP 59592 to 60192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,513 DEBUG Processing 128/478 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:22,598 DEBUG Processing 122/1143 atomic regions from SNP 36421 to 37022 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,644 DEBUG Processing 215/868 atomic regions from SNP 64414 to 65015 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,687 DEBUG Processing 200/913 atomic regions from SNP 59892 to 60492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,722 DEBUG Processing 149/1035 atomic regions from SNP 44435 to 45035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,750 DEBUG Processing 129/478 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:22,870 DEBUG Processing 123/1143 atomic regions from SNP 36722 to 37323 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,888 DEBUG Processing 216/868 atomic regions from SNP 64715 to 65316 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,942 DEBUG Processing 201/913 atomic regions from SNP 60192 to 60792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,992 DEBUG Processing 130/478 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:23,027 DEBUG Processing 150/1035 atomic regions from SNP 44735 to 45335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,129 DEBUG Processing 217/868 atomic regions from SNP 65016 to 65617 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,149 DEBUG Processing 124/1143 atomic regions from SNP 37023 to 37624 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,198 DEBUG Processing 202/913 atomic regions from SNP 60492 to 61092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,237 DEBUG Processing 131/478 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:23,325 DEBUG Processing 151/1035 atomic regions from SNP 45035 to 45635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,366 DEBUG Processing 218/868 atomic regions from SNP 65317 to 65918 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,425 DEBUG Processing 125/1143 atomic regions from SNP 37324 to 37925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,452 DEBUG Processing 203/913 atomic regions from SNP 60792 to 61392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,482 DEBUG Processing 132/478 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:23,606 DEBUG Processing 219/868 atomic regions from SNP 65618 to 66219 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,617 DEBUG Processing 152/1035 atomic regions from SNP 45335 to 45935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,706 DEBUG Processing 204/913 atomic regions from SNP 61092 to 61692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,713 DEBUG Processing 126/1143 atomic regions from SNP 37625 to 38226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,724 DEBUG Processing 133/478 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:23,839 DEBUG Processing 220/868 atomic regions from SNP 65919 to 66520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,905 DEBUG Processing 153/1035 atomic regions from SNP 45635 to 46235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,952 DEBUG Processing 205/913 atomic regions from SNP 61392 to 61992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,963 DEBUG Processing 134/478 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:23,994 DEBUG Processing 127/1143 atomic regions from SNP 37926 to 38527 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,077 DEBUG Processing 221/868 atomic regions from SNP 66220 to 66820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,196 DEBUG Processing 154/1035 atomic regions from SNP 45935 to 46535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,197 DEBUG Processing 206/913 atomic regions from SNP 61692 to 62292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,201 DEBUG Processing 135/478 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:24,281 DEBUG Processing 128/1143 atomic regions from SNP 38227 to 38828 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,323 DEBUG Processing 222/868 atomic regions from SNP 66520 to 67120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,436 DEBUG Processing 136/478 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:24,440 DEBUG Processing 207/913 atomic regions from SNP 61992 to 62592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,490 DEBUG Processing 155/1035 atomic regions from SNP 46235 to 46835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,565 DEBUG Processing 223/868 atomic regions from SNP 66820 to 67420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,568 DEBUG Processing 129/1143 atomic regions from SNP 38528 to 39129 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,671 DEBUG Processing 137/478 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:24,691 DEBUG Processing 208/913 atomic regions from SNP 62292 to 62892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,777 DEBUG Processing 156/1035 atomic regions from SNP 46535 to 47135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,809 DEBUG Processing 224/868 atomic regions from SNP 67120 to 67720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,852 DEBUG Processing 130/1143 atomic regions from SNP 38829 to 39430 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,904 DEBUG Processing 138/478 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:24,936 DEBUG Processing 209/913 atomic regions from SNP 62592 to 63192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,052 DEBUG Processing 225/868 atomic regions from SNP 67420 to 68020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,066 DEBUG Processing 157/1035 atomic regions from SNP 46835 to 47435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,131 DEBUG Processing 131/1143 atomic regions from SNP 39130 to 39731 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,136 DEBUG Processing 139/478 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:25,180 DEBUG Processing 210/913 atomic regions from SNP 62892 to 63492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,293 DEBUG Processing 226/868 atomic regions from SNP 67720 to 68320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,347 DEBUG Processing 158/1035 atomic regions from SNP 47135 to 47735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,372 DEBUG Processing 140/478 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:25,416 DEBUG Processing 132/1143 atomic regions from SNP 39431 to 40032 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,428 DEBUG Processing 211/913 atomic regions from SNP 63192 to 63792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,537 DEBUG Processing 227/868 atomic regions from SNP 68020 to 68620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,608 DEBUG Processing 141/478 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:25,637 DEBUG Processing 159/1035 atomic regions from SNP 47435 to 48035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,672 DEBUG Processing 212/913 atomic regions from SNP 63492 to 64092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,698 DEBUG Processing 133/1143 atomic regions from SNP 39732 to 40333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,710 DEBUG Segmenting atomic regions: 2025-01-31 09:45:25,781 DEBUG Processing 228/868 atomic regions from SNP 68320 to 68920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,837 DEBUG Processing 1/657 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,849 DEBUG Processing 142/478 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:25,927 DEBUG Processing 213/913 atomic regions from SNP 63792 to 64392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,940 DEBUG Processing 160/1035 atomic regions from SNP 47735 to 48335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,993 DEBUG Processing 134/1143 atomic regions from SNP 40033 to 40634 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,033 DEBUG Processing 229/868 atomic regions from SNP 68620 to 69220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,088 DEBUG Processing 143/478 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:26,106 DEBUG Processing 2/657 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,171 DEBUG Processing 214/913 atomic regions from SNP 64092 to 64692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,240 DEBUG Processing 161/1035 atomic regions from SNP 48035 to 48635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,277 DEBUG Processing 230/868 atomic regions from SNP 68920 to 69520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,278 DEBUG Processing 135/1143 atomic regions from SNP 40334 to 40935 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,327 DEBUG Processing 144/478 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:26,368 DEBUG Processing 3/657 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,416 DEBUG Processing 215/913 atomic regions from SNP 64392 to 64992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,528 DEBUG Processing 231/868 atomic regions from SNP 69220 to 69820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,544 DEBUG Processing 162/1035 atomic regions from SNP 48335 to 48935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,569 DEBUG Processing 136/1143 atomic regions from SNP 40635 to 41236 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,569 DEBUG Processing 145/478 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:26,627 DEBUG Processing 4/657 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,660 DEBUG Processing 216/913 atomic regions from SNP 64692 to 65292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,776 DEBUG Processing 232/868 atomic regions from SNP 69520 to 70120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,811 DEBUG Processing 146/478 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:26,850 DEBUG Processing 163/1035 atomic regions from SNP 48635 to 49235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,859 DEBUG Processing 137/1143 atomic regions from SNP 40936 to 41537 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,898 DEBUG Processing 5/657 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,904 DEBUG Processing 217/913 atomic regions from SNP 64992 to 65592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,022 DEBUG Processing 233/868 atomic regions from SNP 69820 to 70420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,049 DEBUG Processing 147/478 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:27,146 DEBUG Processing 164/1035 atomic regions from SNP 48935 to 49535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,146 DEBUG Processing 138/1143 atomic regions from SNP 41237 to 41838 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,154 DEBUG Processing 218/913 atomic regions from SNP 65292 to 65892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,167 DEBUG Processing 6/657 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,268 DEBUG Processing 234/868 atomic regions from SNP 70120 to 70720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,288 DEBUG Processing 148/478 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:27,399 DEBUG Processing 219/913 atomic regions from SNP 65592 to 66192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,427 DEBUG Processing 7/657 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,431 DEBUG Processing 139/1143 atomic regions from SNP 41538 to 42139 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,441 DEBUG Processing 165/1035 atomic regions from SNP 49235 to 49835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,515 DEBUG Processing 235/868 atomic regions from SNP 70420 to 71020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,527 DEBUG Processing 149/478 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:27,644 DEBUG Processing 220/913 atomic regions from SNP 65892 to 66492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,683 DEBUG Processing 8/657 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,723 DEBUG Processing 140/1143 atomic regions from SNP 41839 to 42440 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,736 DEBUG Processing 166/1035 atomic regions from SNP 49535 to 50135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,765 DEBUG Processing 236/868 atomic regions from SNP 70720 to 71320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,771 DEBUG Processing 150/478 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:27,882 DEBUG Processing 221/913 atomic regions from SNP 66192 to 66792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,943 DEBUG Processing 9/657 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,011 DEBUG Processing 141/1143 atomic regions from SNP 42140 to 42741 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,018 DEBUG Processing 237/868 atomic regions from SNP 71020 to 71620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,020 DEBUG Processing 151/478 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:28,042 DEBUG Processing 167/1035 atomic regions from SNP 49835 to 50435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,125 DEBUG Processing 222/913 atomic regions from SNP 66492 to 67092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,197 DEBUG Processing 10/657 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,271 DEBUG Processing 152/478 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:28,274 DEBUG Processing 238/868 atomic regions from SNP 71320 to 71920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,303 DEBUG Processing 142/1143 atomic regions from SNP 42441 to 43042 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,356 DEBUG Processing 168/1035 atomic regions from SNP 50135 to 50735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,371 DEBUG Processing 223/913 atomic regions from SNP 66792 to 67392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,441 DEBUG Processing 11/657 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,517 DEBUG Processing 153/478 atomic regions from SNP 45752 to 46353 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:28,527 DEBUG Processing 239/868 atomic regions from SNP 71620 to 72220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,595 DEBUG Processing 143/1143 atomic regions from SNP 42742 to 43343 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,620 DEBUG Processing 224/913 atomic regions from SNP 67092 to 67692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,651 DEBUG Processing 169/1035 atomic regions from SNP 50435 to 51035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,693 DEBUG Processing 12/657 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,755 DEBUG Processing 154/478 atomic regions from SNP 46053 to 46654 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:28,774 DEBUG Processing 240/868 atomic regions from SNP 71920 to 72520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,874 DEBUG Processing 225/913 atomic regions from SNP 67392 to 67992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,885 DEBUG Processing 144/1143 atomic regions from SNP 43043 to 43644 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,938 DEBUG Processing 13/657 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,948 DEBUG Processing 170/1035 atomic regions from SNP 50735 to 51335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,991 DEBUG Processing 155/478 atomic regions from SNP 46354 to 46955 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:29,018 DEBUG Processing 241/868 atomic regions from SNP 72220 to 72820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,123 DEBUG Processing 226/913 atomic regions from SNP 67692 to 68292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,168 DEBUG Processing 145/1143 atomic regions from SNP 43344 to 43945 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,190 DEBUG Processing 14/657 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,229 DEBUG Processing 156/478 atomic regions from SNP 46655 to 47256 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:29,246 DEBUG Processing 171/1035 atomic regions from SNP 51035 to 51635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,267 DEBUG Processing 242/868 atomic regions from SNP 72520 to 73120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,379 DEBUG Processing 227/913 atomic regions from SNP 67992 to 68592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,460 DEBUG Processing 15/657 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,461 DEBUG Processing 146/1143 atomic regions from SNP 43645 to 44246 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,475 DEBUG Processing 157/478 atomic regions from SNP 46956 to 47557 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:29,517 DEBUG Processing 243/868 atomic regions from SNP 72820 to 73420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,550 DEBUG Processing 172/1035 atomic regions from SNP 51335 to 51935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,619 DEBUG Processing 228/913 atomic regions from SNP 68292 to 68892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,721 DEBUG Processing 158/478 atomic regions from SNP 47257 to 47858 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:29,728 DEBUG Processing 16/657 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,753 DEBUG Processing 147/1143 atomic regions from SNP 43946 to 44547 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,766 DEBUG Processing 244/868 atomic regions from SNP 73120 to 73720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,848 DEBUG Processing 173/1035 atomic regions from SNP 51635 to 52235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,860 DEBUG Processing 229/913 atomic regions from SNP 68592 to 69192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,967 DEBUG Processing 159/478 atomic regions from SNP 47558 to 48159 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:29,996 DEBUG Processing 17/657 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,023 DEBUG Processing 245/868 atomic regions from SNP 73420 to 74020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,049 DEBUG Processing 148/1143 atomic regions from SNP 44247 to 44848 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,107 DEBUG Processing 230/913 atomic regions from SNP 68892 to 69492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,147 DEBUG Processing 174/1035 atomic regions from SNP 51935 to 52535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,215 DEBUG Processing 160/478 atomic regions from SNP 47859 to 48460 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:30,278 DEBUG Processing 18/657 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,289 DEBUG Processing 246/868 atomic regions from SNP 73720 to 74320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,353 DEBUG Processing 149/1143 atomic regions from SNP 44548 to 45149 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,363 DEBUG Processing 231/913 atomic regions from SNP 69192 to 69792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,441 DEBUG Processing 175/1035 atomic regions from SNP 52235 to 52835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,446 DEBUG Processing 161/478 atomic regions from SNP 48160 to 48761 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:30,549 DEBUG Processing 247/868 atomic regions from SNP 74020 to 74620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,555 DEBUG Processing 19/657 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,628 DEBUG Processing 232/913 atomic regions from SNP 69492 to 70092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,660 DEBUG Processing 150/1143 atomic regions from SNP 44849 to 45450 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,688 DEBUG Processing 162/478 atomic regions from SNP 48461 to 49062 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:30,741 DEBUG Processing 176/1035 atomic regions from SNP 52535 to 53135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,801 DEBUG Processing 248/868 atomic regions from SNP 74320 to 74920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,829 DEBUG Processing 20/657 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,884 DEBUG Processing 233/913 atomic regions from SNP 69792 to 70392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,925 DEBUG Processing 163/478 atomic regions from SNP 48762 to 49363 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:30,951 DEBUG Processing 151/1143 atomic regions from SNP 45150 to 45751 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,035 DEBUG Processing 177/1035 atomic regions from SNP 52835 to 53435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,043 DEBUG Processing 249/868 atomic regions from SNP 74620 to 75220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,098 DEBUG Processing 21/657 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,140 DEBUG Processing 234/913 atomic regions from SNP 70092 to 70692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,166 DEBUG Processing 164/478 atomic regions from SNP 49063 to 49664 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:31,236 DEBUG Processing 152/1143 atomic regions from SNP 45451 to 46052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,284 DEBUG Processing 250/868 atomic regions from SNP 74920 to 75520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,333 DEBUG Processing 178/1035 atomic regions from SNP 53135 to 53735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,362 DEBUG Processing 22/657 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,397 DEBUG Processing 235/913 atomic regions from SNP 70392 to 70992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,411 DEBUG Processing 165/478 atomic regions from SNP 49364 to 49965 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:31,522 DEBUG Processing 153/1143 atomic regions from SNP 45752 to 46353 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,530 DEBUG Processing 251/868 atomic regions from SNP 75220 to 75820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,629 DEBUG Processing 23/657 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,647 DEBUG Processing 179/1035 atomic regions from SNP 53435 to 54035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,659 DEBUG Processing 236/913 atomic regions from SNP 70692 to 71292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,668 DEBUG Processing 166/478 atomic regions from SNP 49665 to 50266 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:31,787 DEBUG Processing 252/868 atomic regions from SNP 75520 to 76120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,820 DEBUG Processing 154/1143 atomic regions from SNP 46053 to 46654 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,896 DEBUG Processing 24/657 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,906 DEBUG Processing 237/913 atomic regions from SNP 70992 to 71592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,906 DEBUG Processing 167/478 atomic regions from SNP 49966 to 50567 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:31,946 DEBUG Processing 180/1035 atomic regions from SNP 53735 to 54335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,035 DEBUG Processing 253/868 atomic regions from SNP 75820 to 76420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,103 DEBUG Processing 155/1143 atomic regions from SNP 46354 to 46955 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,142 DEBUG Processing 168/478 atomic regions from SNP 50267 to 50868 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:32,148 DEBUG Processing 238/913 atomic regions from SNP 71292 to 71892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,161 DEBUG Processing 25/657 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,241 DEBUG Processing 181/1035 atomic regions from SNP 54035 to 54635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,286 DEBUG Processing 254/868 atomic regions from SNP 76120 to 76720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,382 DEBUG Processing 169/478 atomic regions from SNP 50568 to 51169 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:32,392 DEBUG Processing 156/1143 atomic regions from SNP 46655 to 47256 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,399 DEBUG Processing 239/913 atomic regions from SNP 71592 to 72192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,429 DEBUG Processing 26/657 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,536 DEBUG Processing 182/1035 atomic regions from SNP 54335 to 54935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,548 DEBUG Processing 255/868 atomic regions from SNP 76420 to 77020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,624 DEBUG Processing 170/478 atomic regions from SNP 50869 to 51470 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:32,654 DEBUG Processing 240/913 atomic regions from SNP 71892 to 72492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,675 DEBUG Processing 157/1143 atomic regions from SNP 46956 to 47557 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,685 DEBUG Processing 27/657 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,807 DEBUG Processing 256/868 atomic regions from SNP 76720 to 77320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,841 DEBUG Processing 183/1035 atomic regions from SNP 54635 to 55235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,873 DEBUG Processing 171/478 atomic regions from SNP 51170 to 51771 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:32,904 DEBUG Processing 241/913 atomic regions from SNP 72192 to 72792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,931 DEBUG Processing 28/657 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,953 DEBUG Processing 158/1143 atomic regions from SNP 47257 to 47858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,072 DEBUG Processing 257/868 atomic regions from SNP 77020 to 77620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,129 DEBUG Processing 172/478 atomic regions from SNP 51471 to 52072 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:33,149 DEBUG Processing 184/1035 atomic regions from SNP 54935 to 55535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,161 DEBUG Processing 242/913 atomic regions from SNP 72492 to 73092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,180 DEBUG Processing 29/657 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,227 DEBUG Processing 159/1143 atomic regions from SNP 47558 to 48159 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,323 DEBUG Processing 258/868 atomic regions from SNP 77320 to 77920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,388 DEBUG Processing 173/478 atomic regions from SNP 51772 to 52373 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:33,427 DEBUG Processing 243/913 atomic regions from SNP 72792 to 73392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,438 DEBUG Processing 30/657 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,460 DEBUG Processing 185/1035 atomic regions from SNP 55235 to 55835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,514 DEBUG Processing 160/1143 atomic regions from SNP 47859 to 48460 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,571 DEBUG Processing 259/868 atomic regions from SNP 77620 to 78220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,639 DEBUG Processing 174/478 atomic regions from SNP 52073 to 52674 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:33,686 DEBUG Processing 244/913 atomic regions from SNP 73092 to 73692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,693 DEBUG Processing 31/657 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,764 DEBUG Processing 186/1035 atomic regions from SNP 55535 to 56135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,794 DEBUG Processing 161/1143 atomic regions from SNP 48160 to 48761 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,809 DEBUG Processing 260/868 atomic regions from SNP 77920 to 78520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,879 DEBUG Processing 175/478 atomic regions from SNP 52374 to 52975 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:33,949 DEBUG Processing 245/913 atomic regions from SNP 73392 to 73992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,955 DEBUG Processing 32/657 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,066 DEBUG Processing 261/868 atomic regions from SNP 78220 to 78820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,077 DEBUG Processing 187/1035 atomic regions from SNP 55835 to 56435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,089 DEBUG Processing 162/1143 atomic regions from SNP 48461 to 49062 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,120 DEBUG Processing 176/478 atomic regions from SNP 52675 to 53276 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:34,209 DEBUG Processing 246/913 atomic regions from SNP 73692 to 74292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,213 DEBUG Processing 33/657 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,320 DEBUG Processing 262/868 atomic regions from SNP 78520 to 79120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,357 DEBUG Processing 177/478 atomic regions from SNP 52976 to 53577 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:34,372 DEBUG Processing 188/1035 atomic regions from SNP 56135 to 56735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,373 DEBUG Processing 163/1143 atomic regions from SNP 48762 to 49363 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,459 DEBUG Processing 247/913 atomic regions from SNP 73992 to 74592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,469 DEBUG Processing 34/657 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,579 DEBUG Processing 263/868 atomic regions from SNP 78820 to 79420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,606 DEBUG Processing 178/478 atomic regions from SNP 53277 to 53878 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:34,652 DEBUG Processing 189/1035 atomic regions from SNP 56435 to 57035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,662 DEBUG Processing 164/1143 atomic regions from SNP 49063 to 49664 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,708 DEBUG Processing 248/913 atomic regions from SNP 74292 to 74892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,712 DEBUG Processing 35/657 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,831 DEBUG Processing 264/868 atomic regions from SNP 79120 to 79720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,851 DEBUG Processing 179/478 atomic regions from SNP 53578 to 54179 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:34,932 DEBUG Processing 190/1035 atomic regions from SNP 56735 to 57335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,945 DEBUG Processing 165/1143 atomic regions from SNP 49364 to 49965 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,957 DEBUG Processing 36/657 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,961 DEBUG Processing 249/913 atomic regions from SNP 74592 to 75192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,083 DEBUG Processing 265/868 atomic regions from SNP 79420 to 80020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,096 DEBUG Processing 180/478 atomic regions from SNP 53879 to 54480 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:35,207 DEBUG Processing 37/657 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,215 DEBUG Processing 191/1035 atomic regions from SNP 57035 to 57635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,215 DEBUG Processing 250/913 atomic regions from SNP 74892 to 75492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,234 DEBUG Processing 166/1143 atomic regions from SNP 49665 to 50266 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,335 DEBUG Processing 266/868 atomic regions from SNP 79720 to 80320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,340 DEBUG Processing 181/478 atomic regions from SNP 54180 to 54781 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:35,458 DEBUG Processing 38/657 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,470 DEBUG Processing 251/913 atomic regions from SNP 75192 to 75792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,512 DEBUG Processing 192/1035 atomic regions from SNP 57335 to 57935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,524 DEBUG Processing 167/1143 atomic regions from SNP 49966 to 50567 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,583 DEBUG Processing 182/478 atomic regions from SNP 54481 to 55082 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:35,588 DEBUG Processing 267/868 atomic regions from SNP 80020 to 80620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,702 DEBUG Processing 39/657 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,720 DEBUG Processing 252/913 atomic regions from SNP 75492 to 76092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,810 DEBUG Processing 193/1035 atomic regions from SNP 57635 to 58235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,812 DEBUG Processing 168/1143 atomic regions from SNP 50267 to 50868 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,828 DEBUG Processing 183/478 atomic regions from SNP 54782 to 55383 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:35,842 DEBUG Processing 268/868 atomic regions from SNP 80320 to 80920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,946 DEBUG Processing 40/657 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,970 DEBUG Processing 253/913 atomic regions from SNP 75792 to 76392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,078 DEBUG Processing 184/478 atomic regions from SNP 55083 to 55684 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:36,098 DEBUG Processing 269/868 atomic regions from SNP 80620 to 81220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,103 DEBUG Processing 169/1143 atomic regions from SNP 50568 to 51169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,108 DEBUG Processing 194/1035 atomic regions from SNP 57935 to 58535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,192 DEBUG Processing 41/657 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,222 DEBUG Processing 254/913 atomic regions from SNP 76092 to 76692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,319 DEBUG Processing 185/478 atomic regions from SNP 55384 to 55985 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:36,350 DEBUG Processing 270/868 atomic regions from SNP 80920 to 81520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,393 DEBUG Processing 170/1143 atomic regions from SNP 50869 to 51470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,394 DEBUG Processing 195/1035 atomic regions from SNP 58235 to 58835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,437 DEBUG Processing 42/657 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,470 DEBUG Processing 255/913 atomic regions from SNP 76392 to 76992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,557 DEBUG Processing 186/478 atomic regions from SNP 55685 to 56286 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:36,599 DEBUG Processing 271/868 atomic regions from SNP 81220 to 81820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,678 DEBUG Processing 171/1143 atomic regions from SNP 51170 to 51771 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,683 DEBUG Processing 43/657 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,693 DEBUG Processing 196/1035 atomic regions from SNP 58535 to 59135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,723 DEBUG Processing 256/913 atomic regions from SNP 76692 to 77292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,792 DEBUG Processing 187/478 atomic regions from SNP 55986 to 56587 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:36,843 DEBUG Processing 272/868 atomic regions from SNP 81520 to 82120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,928 DEBUG Processing 44/657 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,966 DEBUG Processing 172/1143 atomic regions from SNP 51471 to 52072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,979 DEBUG Processing 257/913 atomic regions from SNP 76992 to 77592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,989 DEBUG Processing 197/1035 atomic regions from SNP 58835 to 59435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,035 DEBUG Processing 188/478 atomic regions from SNP 56287 to 56888 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:37,090 DEBUG Processing 273/868 atomic regions from SNP 81820 to 82420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,169 DEBUG Processing 45/657 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,234 DEBUG Processing 258/913 atomic regions from SNP 77292 to 77892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,250 DEBUG Processing 173/1143 atomic regions from SNP 51772 to 52373 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,289 DEBUG Processing 189/478 atomic regions from SNP 56588 to 57189 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:37,292 DEBUG Processing 198/1035 atomic regions from SNP 59135 to 59735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,338 DEBUG Processing 274/868 atomic regions from SNP 82120 to 82720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,405 DEBUG Processing 46/657 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,483 DEBUG Processing 259/913 atomic regions from SNP 77592 to 78192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,539 DEBUG Processing 190/478 atomic regions from SNP 56889 to 57490 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:37,539 DEBUG Processing 174/1143 atomic regions from SNP 52073 to 52674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,591 DEBUG Processing 275/868 atomic regions from SNP 82420 to 83020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,592 DEBUG Processing 199/1035 atomic regions from SNP 59435 to 60035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,643 DEBUG Processing 47/657 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,722 DEBUG Processing 260/913 atomic regions from SNP 77892 to 78492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,785 DEBUG Processing 191/478 atomic regions from SNP 57190 to 57791 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:37,822 DEBUG Processing 175/1143 atomic regions from SNP 52374 to 52975 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,849 DEBUG Processing 276/868 atomic regions from SNP 82720 to 83320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,890 DEBUG Processing 48/657 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,893 DEBUG Processing 200/1035 atomic regions from SNP 59735 to 60335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,962 DEBUG Processing 261/913 atomic regions from SNP 78192 to 78792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,035 DEBUG Processing 192/478 atomic regions from SNP 57491 to 58092 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:38,106 DEBUG Processing 277/868 atomic regions from SNP 83020 to 83620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,113 DEBUG Processing 176/1143 atomic regions from SNP 52675 to 53276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,144 DEBUG Processing 49/657 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,184 DEBUG Processing 201/1035 atomic regions from SNP 60035 to 60635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,211 DEBUG Processing 262/913 atomic regions from SNP 78492 to 79092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,286 DEBUG Processing 193/478 atomic regions from SNP 57792 to 58393 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:38,357 DEBUG Processing 278/868 atomic regions from SNP 83320 to 83920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,393 DEBUG Processing 50/657 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,418 DEBUG Processing 177/1143 atomic regions from SNP 52976 to 53577 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,463 DEBUG Processing 202/1035 atomic regions from SNP 60335 to 60935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,470 DEBUG Processing 263/913 atomic regions from SNP 78792 to 79392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,544 DEBUG Processing 194/478 atomic regions from SNP 58093 to 58694 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:38,604 DEBUG Processing 279/868 atomic regions from SNP 83620 to 84220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,637 DEBUG Processing 51/657 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,713 DEBUG Processing 178/1143 atomic regions from SNP 53277 to 53878 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,729 DEBUG Processing 264/913 atomic regions from SNP 79092 to 79692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,739 DEBUG Processing 203/1035 atomic regions from SNP 60635 to 61235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,808 DEBUG Processing 195/478 atomic regions from SNP 58394 to 58995 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:38,851 DEBUG Processing 280/868 atomic regions from SNP 83920 to 84520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,880 DEBUG Processing 52/657 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,989 DEBUG Processing 265/913 atomic regions from SNP 79392 to 79992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,005 DEBUG Processing 179/1143 atomic regions from SNP 53578 to 54179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,017 DEBUG Processing 204/1035 atomic regions from SNP 60935 to 61535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,080 DEBUG Processing 196/478 atomic regions from SNP 58695 to 59296 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:39,102 DEBUG Processing 281/868 atomic regions from SNP 84220 to 84820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,125 DEBUG Processing 53/657 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,231 DEBUG Processing 266/913 atomic regions from SNP 79692 to 80292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,290 DEBUG Processing 180/1143 atomic regions from SNP 53879 to 54480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,291 DEBUG Processing 205/1035 atomic regions from SNP 61235 to 61835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,336 DEBUG Processing 197/478 atomic regions from SNP 58996 to 59597 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:39,360 DEBUG Processing 282/868 atomic regions from SNP 84520 to 85120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,376 DEBUG Processing 54/657 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,477 DEBUG Processing 267/913 atomic regions from SNP 79992 to 80592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,570 DEBUG Processing 206/1035 atomic regions from SNP 61535 to 62135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,581 DEBUG Processing 181/1143 atomic regions from SNP 54180 to 54781 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,597 DEBUG Processing 198/478 atomic regions from SNP 59297 to 59898 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:39,624 DEBUG Processing 283/868 atomic regions from SNP 84820 to 85420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,632 DEBUG Processing 55/657 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,719 DEBUG Processing 268/913 atomic regions from SNP 80292 to 80892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,845 DEBUG Processing 207/1035 atomic regions from SNP 61835 to 62435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,849 DEBUG Processing 199/478 atomic regions from SNP 59598 to 60199 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:39,884 DEBUG Processing 56/657 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,891 DEBUG Processing 182/1143 atomic regions from SNP 54481 to 55082 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,897 DEBUG Processing 284/868 atomic regions from SNP 85120 to 85720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,971 DEBUG Processing 269/913 atomic regions from SNP 80592 to 81192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,092 DEBUG Processing 200/478 atomic regions from SNP 59899 to 60500 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:40,120 DEBUG Processing 208/1035 atomic regions from SNP 62135 to 62735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,137 DEBUG Processing 57/657 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,164 DEBUG Processing 285/868 atomic regions from SNP 85420 to 86020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,208 DEBUG Processing 183/1143 atomic regions from SNP 54782 to 55383 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,232 DEBUG Processing 270/913 atomic regions from SNP 80892 to 81492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,328 DEBUG Processing 201/478 atomic regions from SNP 60200 to 60801 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:40,382 DEBUG Processing 58/657 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,393 DEBUG Processing 209/1035 atomic regions from SNP 62435 to 63035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,422 DEBUG Processing 286/868 atomic regions from SNP 85720 to 86320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,509 DEBUG Processing 271/913 atomic regions from SNP 81192 to 81792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,537 DEBUG Processing 184/1143 atomic regions from SNP 55083 to 55684 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,576 DEBUG Processing 202/478 atomic regions from SNP 60501 to 61102 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:40,626 DEBUG Processing 59/657 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,669 DEBUG Processing 210/1035 atomic regions from SNP 62735 to 63335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,672 DEBUG Processing 287/868 atomic regions from SNP 86020 to 86620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,788 DEBUG Processing 272/913 atomic regions from SNP 81492 to 82092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,853 DEBUG Processing 203/478 atomic regions from SNP 60802 to 61403 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:40,857 DEBUG Processing 185/1143 atomic regions from SNP 55384 to 55985 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,879 DEBUG Processing 60/657 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,923 DEBUG Processing 288/868 atomic regions from SNP 86320 to 86920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,968 DEBUG Processing 211/1035 atomic regions from SNP 63035 to 63635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,067 DEBUG Processing 273/913 atomic regions from SNP 81792 to 82392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,120 DEBUG Processing 204/478 atomic regions from SNP 61103 to 61704 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:41,126 DEBUG Processing 61/657 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,146 DEBUG Processing 186/1143 atomic regions from SNP 55685 to 56286 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,171 DEBUG Processing 289/868 atomic regions from SNP 86620 to 87220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,240 DEBUG Processing 212/1035 atomic regions from SNP 63335 to 63935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,358 DEBUG Processing 274/913 atomic regions from SNP 82092 to 82692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,382 DEBUG Processing 62/657 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,403 DEBUG Processing 205/478 atomic regions from SNP 61404 to 62005 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:41,426 DEBUG Processing 290/868 atomic regions from SNP 86920 to 87520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,441 DEBUG Processing 187/1143 atomic regions from SNP 55986 to 56587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,509 DEBUG Processing 213/1035 atomic regions from SNP 63635 to 64235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,634 DEBUG Processing 63/657 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,646 DEBUG Processing 275/913 atomic regions from SNP 82392 to 82992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,682 DEBUG Processing 206/478 atomic regions from SNP 61705 to 62306 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:41,683 DEBUG Processing 291/868 atomic regions from SNP 87220 to 87820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,727 DEBUG Processing 188/1143 atomic regions from SNP 56287 to 56888 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,790 DEBUG Processing 214/1035 atomic regions from SNP 63935 to 64535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,881 DEBUG Processing 64/657 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,932 DEBUG Processing 276/913 atomic regions from SNP 82692 to 83292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,938 DEBUG Processing 292/868 atomic regions from SNP 87520 to 88120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,959 DEBUG Processing 207/478 atomic regions from SNP 62006 to 62607 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:42,014 DEBUG Processing 189/1143 atomic regions from SNP 56588 to 57189 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,079 DEBUG Processing 215/1035 atomic regions from SNP 64235 to 64835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,120 DEBUG Processing 65/657 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,195 DEBUG Processing 293/868 atomic regions from SNP 87820 to 88420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,222 DEBUG Processing 277/913 atomic regions from SNP 82992 to 83592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,243 DEBUG Processing 208/478 atomic regions from SNP 62307 to 62908 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:42,312 DEBUG Processing 190/1143 atomic regions from SNP 56889 to 57490 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,357 DEBUG Processing 66/657 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,373 DEBUG Processing 216/1035 atomic regions from SNP 64535 to 65135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,445 DEBUG Processing 294/868 atomic regions from SNP 88120 to 88720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,499 DEBUG Processing 278/913 atomic regions from SNP 83292 to 83892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,519 DEBUG Processing 209/478 atomic regions from SNP 62608 to 63209 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:42,599 DEBUG Processing 67/657 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,623 DEBUG Processing 191/1143 atomic regions from SNP 57190 to 57791 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,654 DEBUG Processing 217/1035 atomic regions from SNP 64835 to 65435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,690 DEBUG Processing 295/868 atomic regions from SNP 88420 to 89020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,766 DEBUG Processing 279/913 atomic regions from SNP 83592 to 84192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,785 DEBUG Processing 210/478 atomic regions from SNP 62909 to 63510 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:42,842 DEBUG Processing 68/657 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,935 DEBUG Processing 192/1143 atomic regions from SNP 57491 to 58092 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,941 DEBUG Processing 296/868 atomic regions from SNP 88720 to 89320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,950 DEBUG Processing 218/1035 atomic regions from SNP 65135 to 65735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,029 DEBUG Processing 280/913 atomic regions from SNP 83892 to 84492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,049 DEBUG Processing 211/478 atomic regions from SNP 63210 to 63811 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:43,081 DEBUG Processing 69/657 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,191 DEBUG Processing 297/868 atomic regions from SNP 89020 to 89620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,232 DEBUG Processing 219/1035 atomic regions from SNP 65435 to 66035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,247 DEBUG Processing 193/1143 atomic regions from SNP 57792 to 58393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,280 DEBUG Processing 281/913 atomic regions from SNP 84192 to 84792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,296 DEBUG Processing 212/478 atomic regions from SNP 63511 to 64112 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:43,319 DEBUG Processing 70/657 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,438 DEBUG Processing 298/868 atomic regions from SNP 89320 to 89920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,513 DEBUG Processing 220/1035 atomic regions from SNP 65735 to 66335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,537 DEBUG Processing 282/913 atomic regions from SNP 84492 to 85092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,544 DEBUG Processing 213/478 atomic regions from SNP 63812 to 64413 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:43,561 DEBUG Processing 71/657 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,570 DEBUG Processing 194/1143 atomic regions from SNP 58093 to 58694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,687 DEBUG Processing 299/868 atomic regions from SNP 89620 to 90220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,797 DEBUG Processing 283/913 atomic regions from SNP 84792 to 85392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,800 DEBUG Processing 221/1035 atomic regions from SNP 66035 to 66635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,800 DEBUG Processing 214/478 atomic regions from SNP 64113 to 64714 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:43,813 DEBUG Processing 72/657 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,895 DEBUG Processing 195/1143 atomic regions from SNP 58394 to 58995 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,934 DEBUG Processing 300/868 atomic regions from SNP 89920 to 90520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,047 DEBUG Processing 215/478 atomic regions from SNP 64414 to 65015 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:44,052 DEBUG Processing 284/913 atomic regions from SNP 85092 to 85692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,060 DEBUG Processing 73/657 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,077 DEBUG Processing 222/1035 atomic regions from SNP 66335 to 66935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,180 DEBUG Processing 301/868 atomic regions from SNP 90220 to 90820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,202 DEBUG Processing 196/1143 atomic regions from SNP 58695 to 59296 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,291 DEBUG Processing 216/478 atomic regions from SNP 64715 to 65316 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:44,303 DEBUG Processing 285/913 atomic regions from SNP 85392 to 85992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,304 DEBUG Processing 74/657 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,353 DEBUG Processing 223/1035 atomic regions from SNP 66635 to 67235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,426 DEBUG Processing 302/868 atomic regions from SNP 90520 to 91120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,506 DEBUG Processing 197/1143 atomic regions from SNP 58996 to 59597 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,546 DEBUG Processing 217/478 atomic regions from SNP 65016 to 65617 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:44,550 DEBUG Processing 75/657 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,554 DEBUG Processing 286/913 atomic regions from SNP 85692 to 86292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,623 DEBUG Processing 224/1035 atomic regions from SNP 66935 to 67535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,672 DEBUG Processing 303/868 atomic regions from SNP 90820 to 91420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,801 DEBUG Processing 218/478 atomic regions from SNP 65317 to 65918 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:44,802 DEBUG Processing 76/657 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,807 DEBUG Processing 287/913 atomic regions from SNP 85992 to 86592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,814 DEBUG Processing 198/1143 atomic regions from SNP 59297 to 59898 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,893 DEBUG Processing 225/1035 atomic regions from SNP 67235 to 67835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,916 DEBUG Processing 304/868 atomic regions from SNP 91120 to 91720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,054 DEBUG Processing 219/478 atomic regions from SNP 65618 to 66219 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:45,059 DEBUG Processing 77/657 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,065 DEBUG Processing 288/913 atomic regions from SNP 86292 to 86892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,123 DEBUG Processing 199/1143 atomic regions from SNP 59598 to 60199 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,158 DEBUG Processing 305/868 atomic regions from SNP 91420 to 92020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,162 DEBUG Processing 226/1035 atomic regions from SNP 67535 to 68135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,300 DEBUG Processing 220/478 atomic regions from SNP 65919 to 66520 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:45,310 DEBUG Processing 78/657 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,321 DEBUG Processing 289/913 atomic regions from SNP 86592 to 87192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,408 DEBUG Processing 306/868 atomic regions from SNP 91720 to 92320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,425 DEBUG Processing 200/1143 atomic regions from SNP 59899 to 60500 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,435 DEBUG Processing 227/1035 atomic regions from SNP 67835 to 68435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,545 DEBUG Processing 221/478 atomic regions from SNP 66220 to 66821 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:45,555 DEBUG Processing 79/657 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,571 DEBUG Processing 290/913 atomic regions from SNP 86892 to 87492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,662 DEBUG Processing 307/868 atomic regions from SNP 92020 to 92620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,717 DEBUG Processing 228/1035 atomic regions from SNP 68135 to 68735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,725 DEBUG Processing 201/1143 atomic regions from SNP 60200 to 60801 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,789 DEBUG Processing 222/478 atomic regions from SNP 66521 to 67122 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:45,801 DEBUG Processing 80/657 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,822 DEBUG Processing 291/913 atomic regions from SNP 87192 to 87792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,911 DEBUG Processing 308/868 atomic regions from SNP 92320 to 92920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,999 DEBUG Processing 229/1035 atomic regions from SNP 68435 to 69035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,031 DEBUG Processing 202/1143 atomic regions from SNP 60501 to 61102 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,039 DEBUG Processing 223/478 atomic regions from SNP 66822 to 67423 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:46,052 DEBUG Processing 81/657 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,077 DEBUG Processing 292/913 atomic regions from SNP 87492 to 88092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,155 DEBUG Processing 309/868 atomic regions from SNP 92620 to 93220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,281 DEBUG Processing 230/1035 atomic regions from SNP 68735 to 69335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,284 DEBUG Processing 224/478 atomic regions from SNP 67123 to 67724 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:46,303 DEBUG Processing 82/657 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,333 DEBUG Processing 293/913 atomic regions from SNP 87792 to 88392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,340 DEBUG Processing 203/1143 atomic regions from SNP 60802 to 61403 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,402 DEBUG Processing 310/868 atomic regions from SNP 92920 to 93520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,528 DEBUG Processing 225/478 atomic regions from SNP 67424 to 68025 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:46,550 DEBUG Processing 83/657 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,559 DEBUG Processing 231/1035 atomic regions from SNP 69035 to 69635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,587 DEBUG Processing 294/913 atomic regions from SNP 88092 to 88692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,643 DEBUG Processing 204/1143 atomic regions from SNP 61103 to 61704 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,654 DEBUG Processing 311/868 atomic regions from SNP 93220 to 93820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,770 DEBUG Processing 226/478 atomic regions from SNP 67725 to 68326 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:46,789 DEBUG Processing 84/657 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,836 DEBUG Processing 232/1035 atomic regions from SNP 69335 to 69935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,839 DEBUG Processing 295/913 atomic regions from SNP 88392 to 88992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,914 DEBUG Processing 312/868 atomic regions from SNP 93520 to 94120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,952 DEBUG Processing 205/1143 atomic regions from SNP 61404 to 62005 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,030 DEBUG Processing 227/478 atomic regions from SNP 68026 to 68627 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:47,040 DEBUG Processing 85/657 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,088 DEBUG Processing 296/913 atomic regions from SNP 88692 to 89292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,112 DEBUG Processing 233/1035 atomic regions from SNP 69635 to 70235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,164 DEBUG Processing 313/868 atomic regions from SNP 93820 to 94420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,244 DEBUG Processing 206/1143 atomic regions from SNP 61705 to 62306 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,280 DEBUG Processing 228/478 atomic regions from SNP 68327 to 68928 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:47,285 DEBUG Processing 86/657 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,341 DEBUG Processing 297/913 atomic regions from SNP 88992 to 89592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,387 DEBUG Processing 234/1035 atomic regions from SNP 69935 to 70535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,413 DEBUG Processing 314/868 atomic regions from SNP 94120 to 94720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,523 DEBUG Processing 229/478 atomic regions from SNP 68628 to 69229 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:47,530 DEBUG Processing 87/657 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,538 DEBUG Processing 207/1143 atomic regions from SNP 62006 to 62607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,590 DEBUG Processing 298/913 atomic regions from SNP 89292 to 89892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,659 DEBUG Processing 315/868 atomic regions from SNP 94420 to 95020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,663 DEBUG Processing 235/1035 atomic regions from SNP 70235 to 70835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,764 DEBUG Processing 230/478 atomic regions from SNP 68929 to 69530 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:47,774 DEBUG Processing 88/657 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,833 DEBUG Processing 208/1143 atomic regions from SNP 62307 to 62908 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,836 DEBUG Processing 299/913 atomic regions from SNP 89592 to 90192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,907 DEBUG Processing 316/868 atomic regions from SNP 94720 to 95320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,942 DEBUG Processing 236/1035 atomic regions from SNP 70535 to 71135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,009 DEBUG Processing 231/478 atomic regions from SNP 69230 to 69831 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:48,020 DEBUG Processing 89/657 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,095 DEBUG Processing 300/913 atomic regions from SNP 89892 to 90492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,154 DEBUG Processing 209/1143 atomic regions from SNP 62608 to 63209 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,164 DEBUG Processing 317/868 atomic regions from SNP 95020 to 95620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,224 DEBUG Processing 237/1035 atomic regions from SNP 70835 to 71435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,254 DEBUG Processing 232/478 atomic regions from SNP 69531 to 70132 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:48,263 DEBUG Processing 90/657 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,343 DEBUG Processing 301/913 atomic regions from SNP 90192 to 90792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,416 DEBUG Processing 318/868 atomic regions from SNP 95320 to 95920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,465 DEBUG Processing 210/1143 atomic regions from SNP 62909 to 63510 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,502 DEBUG Processing 233/478 atomic regions from SNP 69832 to 70433 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:48,510 DEBUG Processing 238/1035 atomic regions from SNP 71135 to 71735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,520 DEBUG Processing 91/657 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,586 DEBUG Processing 302/913 atomic regions from SNP 90492 to 91092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,664 DEBUG Processing 319/868 atomic regions from SNP 95620 to 96220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,752 DEBUG Processing 234/478 atomic regions from SNP 70133 to 70734 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:48,766 DEBUG Processing 211/1143 atomic regions from SNP 63210 to 63811 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,782 DEBUG Processing 92/657 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,797 DEBUG Processing 239/1035 atomic regions from SNP 71435 to 72035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,836 DEBUG Processing 303/913 atomic regions from SNP 90792 to 91392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,910 DEBUG Processing 320/868 atomic regions from SNP 95920 to 96520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,999 DEBUG Processing 235/478 atomic regions from SNP 70434 to 71035 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:49,033 DEBUG Processing 93/657 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,076 DEBUG Processing 212/1143 atomic regions from SNP 63511 to 64112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,081 DEBUG Processing 240/1035 atomic regions from SNP 71735 to 72335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,092 DEBUG Processing 304/913 atomic regions from SNP 91092 to 91692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,153 DEBUG Processing 321/868 atomic regions from SNP 96220 to 96820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,237 DEBUG Processing 236/478 atomic regions from SNP 70735 to 71336 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:49,278 DEBUG Processing 94/657 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,344 DEBUG Processing 305/913 atomic regions from SNP 91392 to 91992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,362 DEBUG Processing 241/1035 atomic regions from SNP 72035 to 72635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,387 DEBUG Processing 213/1143 atomic regions from SNP 63812 to 64413 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,405 DEBUG Processing 322/868 atomic regions from SNP 96520 to 97120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,478 DEBUG Processing 237/478 atomic regions from SNP 71036 to 71637 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:49,519 DEBUG Processing 95/657 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,588 DEBUG Processing 306/913 atomic regions from SNP 91692 to 92292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,636 DEBUG Processing 242/1035 atomic regions from SNP 72335 to 72935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,661 DEBUG Processing 323/868 atomic regions from SNP 96820 to 97420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,688 DEBUG Processing 214/1143 atomic regions from SNP 64113 to 64714 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,730 DEBUG Processing 238/478 atomic regions from SNP 71337 to 71938 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:49,766 DEBUG Processing 96/657 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,832 DEBUG Processing 307/913 atomic regions from SNP 91992 to 92592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,905 DEBUG Processing 243/1035 atomic regions from SNP 72635 to 73235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,914 DEBUG Processing 324/868 atomic regions from SNP 97120 to 97720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,980 DEBUG Processing 215/1143 atomic regions from SNP 64414 to 65015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,984 DEBUG Processing 239/478 atomic regions from SNP 71638 to 72239 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:50,018 DEBUG Processing 97/657 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,074 DEBUG Processing 308/913 atomic regions from SNP 92292 to 92892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,157 DEBUG Processing 325/868 atomic regions from SNP 97420 to 98020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,167 DEBUG Processing 244/1035 atomic regions from SNP 72935 to 73535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,239 DEBUG Processing 240/478 atomic regions from SNP 71939 to 72540 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:50,277 DEBUG Processing 98/657 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,278 DEBUG Processing 216/1143 atomic regions from SNP 64715 to 65316 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,329 DEBUG Processing 309/913 atomic regions from SNP 92592 to 93192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,397 DEBUG Processing 326/868 atomic regions from SNP 97720 to 98320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,429 DEBUG Processing 245/1035 atomic regions from SNP 73235 to 73835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,482 DEBUG Processing 241/478 atomic regions from SNP 72240 to 72841 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:50,545 DEBUG Processing 99/657 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,571 DEBUG Processing 217/1143 atomic regions from SNP 65016 to 65617 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,588 DEBUG Processing 310/913 atomic regions from SNP 92892 to 93492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,639 DEBUG Processing 327/868 atomic regions from SNP 98020 to 98620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,691 DEBUG Processing 246/1035 atomic regions from SNP 73535 to 74135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,718 DEBUG Processing 242/478 atomic regions from SNP 72541 to 73142 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:50,812 DEBUG Processing 100/657 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,855 DEBUG Processing 311/913 atomic regions from SNP 93192 to 93792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,873 DEBUG Processing 218/1143 atomic regions from SNP 65317 to 65918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,903 DEBUG Processing 328/868 atomic regions from SNP 98320 to 98920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,965 DEBUG Processing 243/478 atomic regions from SNP 72842 to 73443 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:50,976 DEBUG Processing 247/1035 atomic regions from SNP 73835 to 74435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,076 DEBUG Processing 101/657 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,114 DEBUG Processing 312/913 atomic regions from SNP 93492 to 94092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,160 DEBUG Processing 329/868 atomic regions from SNP 98620 to 99220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,165 DEBUG Processing 219/1143 atomic regions from SNP 65618 to 66219 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,209 DEBUG Processing 244/478 atomic regions from SNP 73143 to 73744 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:51,252 DEBUG Processing 248/1035 atomic regions from SNP 74135 to 74735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,327 DEBUG Processing 102/657 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,362 DEBUG Processing 313/913 atomic regions from SNP 93792 to 94392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,409 DEBUG Processing 330/868 atomic regions from SNP 98920 to 99520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,447 DEBUG Processing 220/1143 atomic regions from SNP 65919 to 66520 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,453 DEBUG Processing 245/478 atomic regions from SNP 73444 to 74045 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:51,530 DEBUG Processing 249/1035 atomic regions from SNP 74435 to 75035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,587 DEBUG Processing 103/657 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,606 DEBUG Processing 314/913 atomic regions from SNP 94092 to 94692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,653 DEBUG Processing 331/868 atomic regions from SNP 99220 to 99820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,695 DEBUG Processing 246/478 atomic regions from SNP 73745 to 74346 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:51,729 DEBUG Processing 221/1143 atomic regions from SNP 66220 to 66821 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,808 DEBUG Processing 250/1035 atomic regions from SNP 74735 to 75335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,848 DEBUG Processing 104/657 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,852 DEBUG Processing 315/913 atomic regions from SNP 94392 to 94992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,897 DEBUG Processing 332/868 atomic regions from SNP 99520 to 100120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,938 DEBUG Processing 247/478 atomic regions from SNP 74046 to 74647 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:52,019 DEBUG Processing 222/1143 atomic regions from SNP 66521 to 67122 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,100 DEBUG Processing 251/1035 atomic regions from SNP 75035 to 75635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,111 DEBUG Processing 105/657 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,118 DEBUG Processing 316/913 atomic regions from SNP 94692 to 95292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,153 DEBUG Processing 333/868 atomic regions from SNP 99820 to 100420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,183 DEBUG Processing 248/478 atomic regions from SNP 74347 to 74948 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:52,306 DEBUG Processing 223/1143 atomic regions from SNP 66822 to 67423 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,368 DEBUG Processing 106/657 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,378 DEBUG Processing 317/913 atomic regions from SNP 94992 to 95592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,391 DEBUG Processing 252/1035 atomic regions from SNP 75335 to 75935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,406 DEBUG Processing 334/868 atomic regions from SNP 100120 to 100720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,421 DEBUG Processing 249/478 atomic regions from SNP 74648 to 75249 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:52,586 DEBUG Processing 224/1143 atomic regions from SNP 67123 to 67724 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,630 DEBUG Processing 107/657 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,653 DEBUG Processing 318/913 atomic regions from SNP 95292 to 95892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,667 DEBUG Processing 335/868 atomic regions from SNP 100420 to 101020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,672 DEBUG Processing 250/478 atomic regions from SNP 74949 to 75550 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:52,680 DEBUG Processing 253/1035 atomic regions from SNP 75635 to 76235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,869 DEBUG Processing 225/1143 atomic regions from SNP 67424 to 68025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,889 DEBUG Processing 108/657 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,920 DEBUG Processing 319/913 atomic regions from SNP 95592 to 96192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,929 DEBUG Processing 251/478 atomic regions from SNP 75250 to 75850 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:52,931 DEBUG Processing 336/868 atomic regions from SNP 100720 to 101320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,966 DEBUG Processing 254/1035 atomic regions from SNP 75935 to 76535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,149 DEBUG Processing 109/657 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,155 DEBUG Processing 226/1143 atomic regions from SNP 67725 to 68326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,186 DEBUG Processing 320/913 atomic regions from SNP 95892 to 96492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,187 DEBUG Processing 252/478 atomic regions from SNP 75550 to 76150 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:53,199 DEBUG Processing 337/868 atomic regions from SNP 101020 to 101620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,251 DEBUG Processing 255/1035 atomic regions from SNP 76235 to 76835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,423 DEBUG Processing 110/657 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,445 DEBUG Processing 253/478 atomic regions from SNP 75850 to 76450 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:53,446 DEBUG Processing 227/1143 atomic regions from SNP 68026 to 68627 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,453 DEBUG Processing 321/913 atomic regions from SNP 96192 to 96792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,465 DEBUG Processing 338/868 atomic regions from SNP 101320 to 101920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,531 DEBUG Processing 256/1035 atomic regions from SNP 76535 to 77135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,679 DEBUG Processing 111/657 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,701 DEBUG Processing 254/478 atomic regions from SNP 76150 to 76750 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:53,722 DEBUG Processing 322/913 atomic regions from SNP 96492 to 97092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,730 DEBUG Processing 339/868 atomic regions from SNP 101620 to 102220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,743 DEBUG Processing 228/1143 atomic regions from SNP 68327 to 68928 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,804 DEBUG Processing 257/1035 atomic regions from SNP 76835 to 77435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,925 DEBUG Processing 112/657 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,949 DEBUG Processing 255/478 atomic regions from SNP 76450 to 77050 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:53,981 DEBUG Processing 323/913 atomic regions from SNP 96792 to 97392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,987 DEBUG Processing 340/868 atomic regions from SNP 101920 to 102520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,034 DEBUG Processing 229/1143 atomic regions from SNP 68628 to 69229 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,076 DEBUG Processing 258/1035 atomic regions from SNP 77135 to 77735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,165 DEBUG Processing 113/657 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,192 DEBUG Processing 256/478 atomic regions from SNP 76750 to 77350 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:54,240 DEBUG Processing 324/913 atomic regions from SNP 97092 to 97692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,243 DEBUG Processing 341/868 atomic regions from SNP 102220 to 102820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,319 DEBUG Processing 230/1143 atomic regions from SNP 68929 to 69530 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,345 DEBUG Processing 259/1035 atomic regions from SNP 77435 to 78035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,406 DEBUG Processing 114/657 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,437 DEBUG Processing 257/478 atomic regions from SNP 77050 to 77650 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:54,494 DEBUG Processing 342/868 atomic regions from SNP 102520 to 103120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,496 DEBUG Processing 325/913 atomic regions from SNP 97392 to 97992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,600 DEBUG Processing 231/1143 atomic regions from SNP 69230 to 69831 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,618 DEBUG Processing 260/1035 atomic regions from SNP 77735 to 78335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,654 DEBUG Processing 115/657 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,684 DEBUG Processing 258/478 atomic regions from SNP 77350 to 77950 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:54,748 DEBUG Processing 343/868 atomic regions from SNP 102820 to 103420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,748 DEBUG Processing 326/913 atomic regions from SNP 97692 to 98292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,873 DEBUG Processing 232/1143 atomic regions from SNP 69531 to 70132 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,884 DEBUG Processing 261/1035 atomic regions from SNP 78035 to 78635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,900 DEBUG Processing 116/657 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,930 DEBUG Processing 259/478 atomic regions from SNP 77650 to 78250 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:54,998 DEBUG Processing 344/868 atomic regions from SNP 103120 to 103720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,001 DEBUG Processing 327/913 atomic regions from SNP 97992 to 98592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,141 DEBUG Processing 117/657 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,146 DEBUG Processing 233/1143 atomic regions from SNP 69832 to 70433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,151 DEBUG Processing 262/1035 atomic regions from SNP 78335 to 78935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,175 DEBUG Processing 260/478 atomic regions from SNP 77950 to 78550 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:55,254 DEBUG Processing 345/868 atomic regions from SNP 103420 to 104020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,259 DEBUG Processing 328/913 atomic regions from SNP 98292 to 98892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,384 DEBUG Processing 118/657 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,425 DEBUG Processing 261/478 atomic regions from SNP 78250 to 78850 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:55,430 DEBUG Processing 263/1035 atomic regions from SNP 78635 to 79235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,438 DEBUG Processing 234/1143 atomic regions from SNP 70133 to 70734 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,510 DEBUG Processing 346/868 atomic regions from SNP 103720 to 104320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,517 DEBUG Processing 329/913 atomic regions from SNP 98592 to 99192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,618 DEBUG Processing 119/657 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,667 DEBUG Processing 262/478 atomic regions from SNP 78550 to 79150 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:55,704 DEBUG Processing 264/1035 atomic regions from SNP 78935 to 79535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,730 DEBUG Processing 235/1143 atomic regions from SNP 70434 to 71035 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,766 DEBUG Processing 347/868 atomic regions from SNP 104020 to 104620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,773 DEBUG Processing 330/913 atomic regions from SNP 98892 to 99492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,852 DEBUG Processing 120/657 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,902 DEBUG Processing 263/478 atomic regions from SNP 78850 to 79450 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:55,985 DEBUG Processing 265/1035 atomic regions from SNP 79235 to 79835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,026 DEBUG Processing 348/868 atomic regions from SNP 104320 to 104920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,031 DEBUG Processing 236/1143 atomic regions from SNP 70735 to 71336 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,034 DEBUG Processing 331/913 atomic regions from SNP 99192 to 99792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,092 DEBUG Processing 121/657 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,129 DEBUG Processing 264/478 atomic regions from SNP 79150 to 79750 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:56,263 DEBUG Processing 266/1035 atomic regions from SNP 79535 to 80135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,281 DEBUG Processing 349/868 atomic regions from SNP 104620 to 105220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,295 DEBUG Processing 332/913 atomic regions from SNP 99492 to 100092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,323 DEBUG Processing 237/1143 atomic regions from SNP 71036 to 71637 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,344 DEBUG Processing 122/657 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,367 DEBUG Processing 265/478 atomic regions from SNP 79450 to 80050 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:56,535 DEBUG Processing 350/868 atomic regions from SNP 104920 to 105520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,541 DEBUG Processing 267/1035 atomic regions from SNP 79835 to 80435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,557 DEBUG Processing 333/913 atomic regions from SNP 99792 to 100392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,604 DEBUG Processing 123/657 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,620 DEBUG Processing 266/478 atomic regions from SNP 79750 to 80350 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:56,623 DEBUG Processing 238/1143 atomic regions from SNP 71337 to 71938 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,778 DEBUG Processing 351/868 atomic regions from SNP 105220 to 105820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,816 DEBUG Processing 334/913 atomic regions from SNP 100092 to 100692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,818 DEBUG Processing 268/1035 atomic regions from SNP 80135 to 80735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,867 DEBUG Processing 124/657 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,882 DEBUG Processing 267/478 atomic regions from SNP 80050 to 80650 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:56,930 DEBUG Processing 239/1143 atomic regions from SNP 71638 to 72239 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,020 DEBUG Processing 352/868 atomic regions from SNP 105520 to 106120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,064 DEBUG Processing 335/913 atomic regions from SNP 100392 to 100992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,095 DEBUG Processing 269/1035 atomic regions from SNP 80435 to 81035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,122 DEBUG Processing 125/657 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,134 DEBUG Processing 268/478 atomic regions from SNP 80350 to 80950 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:57,227 DEBUG Processing 240/1143 atomic regions from SNP 71939 to 72540 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,265 DEBUG Processing 353/868 atomic regions from SNP 105820 to 106420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,306 DEBUG Processing 336/913 atomic regions from SNP 100692 to 101292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,368 DEBUG Processing 126/657 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,369 DEBUG Processing 270/1035 atomic regions from SNP 80735 to 81335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,382 DEBUG Processing 269/478 atomic regions from SNP 80650 to 81250 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:57,516 DEBUG Processing 241/1143 atomic regions from SNP 72240 to 72841 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,522 DEBUG Processing 354/868 atomic regions from SNP 106120 to 106720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,551 DEBUG Processing 337/913 atomic regions from SNP 100992 to 101592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,610 DEBUG Processing 127/657 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,625 DEBUG Processing 270/478 atomic regions from SNP 80950 to 81550 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:57,642 DEBUG Processing 271/1035 atomic regions from SNP 81035 to 81635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,773 DEBUG Processing 355/868 atomic regions from SNP 106420 to 107020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,803 DEBUG Processing 338/913 atomic regions from SNP 101292 to 101892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,816 DEBUG Processing 242/1143 atomic regions from SNP 72541 to 73142 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,852 DEBUG Processing 128/657 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,865 DEBUG Processing 271/478 atomic regions from SNP 81250 to 81850 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:57,916 DEBUG Processing 272/1035 atomic regions from SNP 81335 to 81935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,024 DEBUG Processing 356/868 atomic regions from SNP 106720 to 107320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,060 DEBUG Processing 339/913 atomic regions from SNP 101592 to 102192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,102 DEBUG Processing 129/657 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,104 DEBUG Processing 243/1143 atomic regions from SNP 72842 to 73443 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,111 DEBUG Processing 272/478 atomic regions from SNP 81550 to 82150 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:58,182 DEBUG Processing 273/1035 atomic regions from SNP 81635 to 82235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,284 DEBUG Processing 357/868 atomic regions from SNP 107020 to 107620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,319 DEBUG Processing 340/913 atomic regions from SNP 101892 to 102492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,359 DEBUG Processing 130/657 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,361 DEBUG Processing 273/478 atomic regions from SNP 81850 to 82450 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:58,396 DEBUG Processing 244/1143 atomic regions from SNP 73143 to 73744 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,449 DEBUG Processing 274/1035 atomic regions from SNP 81935 to 82535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,541 DEBUG Processing 358/868 atomic regions from SNP 107320 to 107920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,580 DEBUG Processing 341/913 atomic regions from SNP 102192 to 102792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,616 DEBUG Processing 131/657 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,618 DEBUG Processing 274/478 atomic regions from SNP 82150 to 82750 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:58,687 DEBUG Processing 245/1143 atomic regions from SNP 73444 to 74045 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,723 DEBUG Processing 275/1035 atomic regions from SNP 82235 to 82835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,802 DEBUG Processing 359/868 atomic regions from SNP 107620 to 108220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,837 DEBUG Processing 342/913 atomic regions from SNP 102492 to 103092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,873 DEBUG Processing 132/657 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,875 DEBUG Processing 275/478 atomic regions from SNP 82450 to 83050 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:58,980 DEBUG Processing 246/1143 atomic regions from SNP 73745 to 74346 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,999 DEBUG Processing 276/1035 atomic regions from SNP 82535 to 83135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,049 DEBUG Processing 360/868 atomic regions from SNP 107920 to 108520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,085 DEBUG Processing 343/913 atomic regions from SNP 102792 to 103392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,123 DEBUG Processing 133/657 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,124 DEBUG Processing 276/478 atomic regions from SNP 82750 to 83350 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:59,264 DEBUG Processing 247/1143 atomic regions from SNP 74046 to 74647 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,270 DEBUG Processing 277/1035 atomic regions from SNP 82835 to 83435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,298 DEBUG Processing 361/868 atomic regions from SNP 108220 to 108820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,330 DEBUG Processing 344/913 atomic regions from SNP 103092 to 103692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,364 DEBUG Processing 277/478 atomic regions from SNP 83050 to 83650 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:59,365 DEBUG Processing 134/657 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,545 DEBUG Processing 278/1035 atomic regions from SNP 83135 to 83735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,547 DEBUG Processing 248/1143 atomic regions from SNP 74347 to 74948 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,565 DEBUG Processing 362/868 atomic regions from SNP 108520 to 109120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,578 DEBUG Processing 345/913 atomic regions from SNP 103392 to 103992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,605 DEBUG Processing 278/478 atomic regions from SNP 83350 to 83950 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:59,610 DEBUG Processing 135/657 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,819 DEBUG Processing 279/1035 atomic regions from SNP 83435 to 84035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,827 DEBUG Processing 346/913 atomic regions from SNP 103692 to 104292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,829 DEBUG Processing 249/1143 atomic regions from SNP 74648 to 75249 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,830 DEBUG Processing 363/868 atomic regions from SNP 108820 to 109420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,846 DEBUG Processing 279/478 atomic regions from SNP 83650 to 84250 for chrX (subchromosome 4 of 5). 2025-01-31 09:45:59,854 DEBUG Processing 136/657 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,091 DEBUG Processing 364/868 atomic regions from SNP 109120 to 109720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,094 DEBUG Processing 347/913 atomic regions from SNP 103992 to 104592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,099 DEBUG Processing 280/478 atomic regions from SNP 83950 to 84550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:00,108 DEBUG Processing 137/657 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,111 DEBUG Processing 280/1035 atomic regions from SNP 83735 to 84335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,126 DEBUG Processing 250/1143 atomic regions from SNP 74949 to 75550 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,350 DEBUG Processing 365/868 atomic regions from SNP 109420 to 110020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,352 DEBUG Processing 281/478 atomic regions from SNP 84250 to 84850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:00,357 DEBUG Processing 348/913 atomic regions from SNP 104292 to 104892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,364 DEBUG Processing 138/657 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,398 DEBUG Processing 281/1035 atomic regions from SNP 84035 to 84635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,417 DEBUG Processing 251/1143 atomic regions from SNP 75250 to 75851 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,599 DEBUG Processing 282/478 atomic regions from SNP 84550 to 85150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:00,601 DEBUG Processing 366/868 atomic regions from SNP 109720 to 110320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,610 DEBUG Processing 349/913 atomic regions from SNP 104592 to 105192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,615 DEBUG Processing 139/657 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,675 DEBUG Processing 282/1035 atomic regions from SNP 84335 to 84935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,698 DEBUG Processing 252/1143 atomic regions from SNP 75551 to 76152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,847 DEBUG Processing 283/478 atomic regions from SNP 84850 to 85450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:00,852 DEBUG Processing 367/868 atomic regions from SNP 110020 to 110620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,864 DEBUG Processing 350/913 atomic regions from SNP 104892 to 105492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,864 DEBUG Processing 140/657 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,944 DEBUG Processing 283/1035 atomic regions from SNP 84635 to 85235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,980 DEBUG Processing 253/1143 atomic regions from SNP 75852 to 76453 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,097 DEBUG Processing 284/478 atomic regions from SNP 85150 to 85750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:01,107 DEBUG Processing 368/868 atomic regions from SNP 110320 to 110920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,118 DEBUG Processing 141/657 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,121 DEBUG Processing 351/913 atomic regions from SNP 105192 to 105792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,209 DEBUG Processing 284/1035 atomic regions from SNP 84935 to 85535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,255 DEBUG Processing 254/1143 atomic regions from SNP 76153 to 76754 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,352 DEBUG Processing 285/478 atomic regions from SNP 85450 to 86050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:01,369 DEBUG Processing 369/868 atomic regions from SNP 110620 to 111220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,380 DEBUG Processing 142/657 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,388 DEBUG Processing 352/913 atomic regions from SNP 105492 to 106092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,473 DEBUG Processing 285/1035 atomic regions from SNP 85235 to 85835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,528 DEBUG Processing 255/1143 atomic regions from SNP 76454 to 77055 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,610 DEBUG Processing 286/478 atomic regions from SNP 85750 to 86350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:01,635 DEBUG Processing 370/868 atomic regions from SNP 110920 to 111520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,642 DEBUG Processing 143/657 atomic regions from SNP 42742 to 43342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,656 DEBUG Processing 353/913 atomic regions from SNP 105792 to 106392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,742 DEBUG Processing 286/1035 atomic regions from SNP 85535 to 86135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,794 DEBUG Processing 256/1143 atomic regions from SNP 76755 to 77356 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,856 DEBUG Processing 287/478 atomic regions from SNP 86050 to 86650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:01,897 DEBUG Processing 371/868 atomic regions from SNP 111220 to 111820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,902 DEBUG Processing 144/657 atomic regions from SNP 43042 to 43642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,920 DEBUG Processing 354/913 atomic regions from SNP 106092 to 106692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,018 DEBUG Processing 287/1035 atomic regions from SNP 85835 to 86435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,070 DEBUG Processing 257/1143 atomic regions from SNP 77056 to 77657 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,094 DEBUG Processing 288/478 atomic regions from SNP 86350 to 86950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:02,151 DEBUG Processing 372/868 atomic regions from SNP 111520 to 112120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,153 DEBUG Processing 145/657 atomic regions from SNP 43342 to 43942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,180 DEBUG Processing 355/913 atomic regions from SNP 106392 to 106992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,296 DEBUG Processing 288/1035 atomic regions from SNP 86135 to 86735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,330 DEBUG Processing 289/478 atomic regions from SNP 86650 to 87250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:02,348 DEBUG Processing 258/1143 atomic regions from SNP 77357 to 77958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,401 DEBUG Processing 373/868 atomic regions from SNP 111820 to 112420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,401 DEBUG Processing 146/657 atomic regions from SNP 43642 to 44242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,434 DEBUG Processing 356/913 atomic regions from SNP 106692 to 107292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,581 DEBUG Processing 290/478 atomic regions from SNP 86950 to 87550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:02,582 DEBUG Processing 289/1035 atomic regions from SNP 86435 to 87035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,641 DEBUG Processing 259/1143 atomic regions from SNP 77658 to 78259 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,649 DEBUG Processing 147/657 atomic regions from SNP 43942 to 44542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,651 DEBUG Processing 374/868 atomic regions from SNP 112120 to 112720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,683 DEBUG Processing 357/913 atomic regions from SNP 106992 to 107592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,829 DEBUG Processing 291/478 atomic regions from SNP 87250 to 87850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:02,862 DEBUG Processing 290/1035 atomic regions from SNP 86735 to 87335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,897 DEBUG Processing 148/657 atomic regions from SNP 44242 to 44842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,902 DEBUG Processing 375/868 atomic regions from SNP 112420 to 113020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,929 DEBUG Processing 260/1143 atomic regions from SNP 77959 to 78560 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,935 DEBUG Processing 358/913 atomic regions from SNP 107292 to 107892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,079 DEBUG Processing 292/478 atomic regions from SNP 87550 to 88150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:03,150 DEBUG Processing 291/1035 atomic regions from SNP 87035 to 87635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,157 DEBUG Processing 149/657 atomic regions from SNP 44542 to 45142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,161 DEBUG Processing 376/868 atomic regions from SNP 112720 to 113320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,196 DEBUG Processing 359/913 atomic regions from SNP 107592 to 108192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,218 DEBUG Processing 261/1143 atomic regions from SNP 78260 to 78861 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,318 DEBUG Processing 293/478 atomic regions from SNP 87850 to 88450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:03,419 DEBUG Processing 150/657 atomic regions from SNP 44842 to 45442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,421 DEBUG Processing 377/868 atomic regions from SNP 113020 to 113620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,442 DEBUG Processing 292/1035 atomic regions from SNP 87335 to 87935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,477 DEBUG Processing 360/913 atomic regions from SNP 107892 to 108492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,508 DEBUG Processing 262/1143 atomic regions from SNP 78561 to 79162 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,553 DEBUG Processing 294/478 atomic regions from SNP 88150 to 88750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:03,677 DEBUG Processing 151/657 atomic regions from SNP 45142 to 45742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,680 DEBUG Processing 378/868 atomic regions from SNP 113320 to 113920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,728 DEBUG Processing 293/1035 atomic regions from SNP 87635 to 88235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,747 DEBUG Processing 361/913 atomic regions from SNP 108192 to 108792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,784 DEBUG Processing 295/478 atomic regions from SNP 88450 to 89050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:03,796 DEBUG Processing 263/1143 atomic regions from SNP 78862 to 79463 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,929 DEBUG Processing 152/657 atomic regions from SNP 45442 to 46042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,938 DEBUG Processing 379/868 atomic regions from SNP 113620 to 114220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,006 DEBUG Processing 362/913 atomic regions from SNP 108492 to 109092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,016 DEBUG Processing 294/1035 atomic regions from SNP 87935 to 88535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,025 DEBUG Processing 296/478 atomic regions from SNP 88750 to 89350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:04,081 DEBUG Processing 264/1143 atomic regions from SNP 79163 to 79764 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,178 DEBUG Processing 153/657 atomic regions from SNP 45742 to 46342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,191 DEBUG Processing 380/868 atomic regions from SNP 113920 to 114520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,266 DEBUG Processing 363/913 atomic regions from SNP 108792 to 109392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,274 DEBUG Processing 297/478 atomic regions from SNP 89050 to 89650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:04,301 DEBUG Processing 295/1035 atomic regions from SNP 88235 to 88835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,360 DEBUG Processing 265/1143 atomic regions from SNP 79464 to 80065 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,425 DEBUG Processing 154/657 atomic regions from SNP 46042 to 46642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,445 DEBUG Processing 381/868 atomic regions from SNP 114220 to 114820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,524 DEBUG Processing 298/478 atomic regions from SNP 89350 to 89950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:04,532 DEBUG Processing 364/913 atomic regions from SNP 109092 to 109692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,580 DEBUG Processing 296/1035 atomic regions from SNP 88535 to 89135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,641 DEBUG Processing 266/1143 atomic regions from SNP 79765 to 80366 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,665 DEBUG Processing 155/657 atomic regions from SNP 46342 to 46942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,697 DEBUG Processing 382/868 atomic regions from SNP 114520 to 115120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,780 DEBUG Processing 299/478 atomic regions from SNP 89650 to 90250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:04,795 DEBUG Processing 365/913 atomic regions from SNP 109392 to 109992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,855 DEBUG Processing 297/1035 atomic regions from SNP 88835 to 89435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,901 DEBUG Processing 156/657 atomic regions from SNP 46642 to 47242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,916 DEBUG Processing 267/1143 atomic regions from SNP 80066 to 80667 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,939 DEBUG Processing 383/868 atomic regions from SNP 114820 to 115420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,030 DEBUG Processing 300/478 atomic regions from SNP 89950 to 90550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:05,053 DEBUG Processing 366/913 atomic regions from SNP 109692 to 110292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,130 DEBUG Processing 298/1035 atomic regions from SNP 89135 to 89735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,141 DEBUG Processing 157/657 atomic regions from SNP 46942 to 47542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,181 DEBUG Processing 384/868 atomic regions from SNP 115120 to 115720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,194 DEBUG Processing 268/1143 atomic regions from SNP 80367 to 80968 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,277 DEBUG Processing 301/478 atomic regions from SNP 90250 to 90850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:05,308 DEBUG Processing 367/913 atomic regions from SNP 109992 to 110592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,387 DEBUG Processing 158/657 atomic regions from SNP 47242 to 47842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,409 DEBUG Processing 299/1035 atomic regions from SNP 89435 to 90035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,427 DEBUG Processing 385/868 atomic regions from SNP 115420 to 116020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,480 DEBUG Processing 269/1143 atomic regions from SNP 80668 to 81269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,513 DEBUG Processing 302/478 atomic regions from SNP 90550 to 91150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:05,558 DEBUG Processing 368/913 atomic regions from SNP 110292 to 110892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,636 DEBUG Processing 159/657 atomic regions from SNP 47542 to 48142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,680 DEBUG Processing 386/868 atomic regions from SNP 115720 to 116320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,692 DEBUG Processing 300/1035 atomic regions from SNP 89735 to 90335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,752 DEBUG Processing 303/478 atomic regions from SNP 90850 to 91450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:05,764 DEBUG Processing 270/1143 atomic regions from SNP 80969 to 81570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,815 DEBUG Processing 369/913 atomic regions from SNP 110592 to 111192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,879 DEBUG Processing 160/657 atomic regions from SNP 47842 to 48442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,934 DEBUG Processing 387/868 atomic regions from SNP 116020 to 116620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,974 DEBUG Processing 301/1035 atomic regions from SNP 90035 to 90635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,995 DEBUG Processing 304/478 atomic regions from SNP 91150 to 91750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:06,049 DEBUG Processing 271/1143 atomic regions from SNP 81270 to 81871 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,069 DEBUG Processing 370/913 atomic regions from SNP 110892 to 111492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,128 DEBUG Processing 161/657 atomic regions from SNP 48142 to 48742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,187 DEBUG Processing 388/868 atomic regions from SNP 116320 to 116920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,237 DEBUG Processing 305/478 atomic regions from SNP 91450 to 92050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:06,250 DEBUG Processing 302/1035 atomic regions from SNP 90335 to 90935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,319 DEBUG Processing 371/913 atomic regions from SNP 111192 to 111792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,331 DEBUG Processing 272/1143 atomic regions from SNP 81571 to 82172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,373 DEBUG Processing 162/657 atomic regions from SNP 48442 to 49042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,437 DEBUG Processing 389/868 atomic regions from SNP 116620 to 117220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,478 DEBUG Processing 306/478 atomic regions from SNP 91750 to 92350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:06,525 DEBUG Processing 303/1035 atomic regions from SNP 90635 to 91235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,565 DEBUG Processing 372/913 atomic regions from SNP 111492 to 112092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,613 DEBUG Processing 273/1143 atomic regions from SNP 81872 to 82473 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,618 DEBUG Processing 163/657 atomic regions from SNP 48742 to 49342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,694 DEBUG Processing 390/868 atomic regions from SNP 116920 to 117520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,723 DEBUG Processing 307/478 atomic regions from SNP 92050 to 92650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:06,798 DEBUG Processing 304/1035 atomic regions from SNP 90935 to 91535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,811 DEBUG Processing 373/913 atomic regions from SNP 111792 to 112392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,859 DEBUG Processing 164/657 atomic regions from SNP 49042 to 49642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,892 DEBUG Processing 274/1143 atomic regions from SNP 82173 to 82774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,948 DEBUG Processing 391/868 atomic regions from SNP 117220 to 117820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,972 DEBUG Processing 308/478 atomic regions from SNP 92350 to 92950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:07,056 DEBUG Processing 374/913 atomic regions from SNP 112092 to 112692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,072 DEBUG Processing 305/1035 atomic regions from SNP 91235 to 91835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,096 DEBUG Processing 165/657 atomic regions from SNP 49342 to 49942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,171 DEBUG Processing 275/1143 atomic regions from SNP 82474 to 83075 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,203 DEBUG Processing 392/868 atomic regions from SNP 117520 to 118120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,222 DEBUG Processing 309/478 atomic regions from SNP 92650 to 93250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:07,309 DEBUG Processing 375/913 atomic regions from SNP 112392 to 112992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,332 DEBUG Processing 166/657 atomic regions from SNP 49642 to 50242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,345 DEBUG Processing 306/1035 atomic regions from SNP 91535 to 92135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,449 DEBUG Processing 276/1143 atomic regions from SNP 82775 to 83376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,450 DEBUG Processing 393/868 atomic regions from SNP 117820 to 118420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,468 DEBUG Processing 310/478 atomic regions from SNP 92950 to 93550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:07,566 DEBUG Processing 376/913 atomic regions from SNP 112692 to 113292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,581 DEBUG Processing 167/657 atomic regions from SNP 49942 to 50542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,620 DEBUG Processing 307/1035 atomic regions from SNP 91835 to 92435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,692 DEBUG Processing 394/868 atomic regions from SNP 118120 to 118720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,705 DEBUG Processing 311/478 atomic regions from SNP 93250 to 93850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:07,726 DEBUG Processing 277/1143 atomic regions from SNP 83076 to 83677 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,824 DEBUG Processing 377/913 atomic regions from SNP 112992 to 113592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,832 DEBUG Processing 168/657 atomic regions from SNP 50242 to 50842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,894 DEBUG Processing 308/1035 atomic regions from SNP 92135 to 92735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,932 DEBUG Processing 395/868 atomic regions from SNP 118420 to 119020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,940 DEBUG Processing 312/478 atomic regions from SNP 93550 to 94150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:08,005 DEBUG Processing 278/1143 atomic regions from SNP 83377 to 83978 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,079 DEBUG Processing 378/913 atomic regions from SNP 113292 to 113892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,082 DEBUG Processing 169/657 atomic regions from SNP 50542 to 51142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,171 DEBUG Processing 309/1035 atomic regions from SNP 92435 to 93035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,180 DEBUG Processing 396/868 atomic regions from SNP 118720 to 119320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,187 DEBUG Processing 313/478 atomic regions from SNP 93850 to 94450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:08,285 DEBUG Processing 279/1143 atomic regions from SNP 83678 to 84279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,330 DEBUG Processing 170/657 atomic regions from SNP 50842 to 51442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,340 DEBUG Processing 379/913 atomic regions from SNP 113592 to 114192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,429 DEBUG Processing 397/868 atomic regions from SNP 119020 to 119620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,429 DEBUG Processing 314/478 atomic regions from SNP 94150 to 94750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:08,447 DEBUG Processing 310/1035 atomic regions from SNP 92735 to 93335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,563 DEBUG Processing 280/1143 atomic regions from SNP 83979 to 84579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,578 DEBUG Processing 171/657 atomic regions from SNP 51142 to 51742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,602 DEBUG Processing 380/913 atomic regions from SNP 113892 to 114492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,672 DEBUG Processing 315/478 atomic regions from SNP 94450 to 95050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:08,677 DEBUG Processing 398/868 atomic regions from SNP 119320 to 119920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,723 DEBUG Processing 311/1035 atomic regions from SNP 93035 to 93635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,826 DEBUG Processing 172/657 atomic regions from SNP 51442 to 52042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,847 DEBUG Processing 281/1143 atomic regions from SNP 84279 to 84879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,856 DEBUG Processing 381/913 atomic regions from SNP 114192 to 114792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,925 DEBUG Processing 399/868 atomic regions from SNP 119620 to 120220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,930 DEBUG Processing 316/478 atomic regions from SNP 94750 to 95350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:08,998 DEBUG Processing 312/1035 atomic regions from SNP 93335 to 93935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,072 DEBUG Processing 173/657 atomic regions from SNP 51742 to 52342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,108 DEBUG Processing 382/913 atomic regions from SNP 114492 to 115092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,137 DEBUG Processing 282/1143 atomic regions from SNP 84579 to 85179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,171 DEBUG Processing 400/868 atomic regions from SNP 119920 to 120520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,194 DEBUG Processing 317/478 atomic regions from SNP 95050 to 95650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:09,270 DEBUG Processing 313/1035 atomic regions from SNP 93635 to 94235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,318 DEBUG Processing 174/657 atomic regions from SNP 52042 to 52642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,372 DEBUG Processing 383/913 atomic regions from SNP 114792 to 115392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,420 DEBUG Processing 401/868 atomic regions from SNP 120220 to 120820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,427 DEBUG Processing 283/1143 atomic regions from SNP 84879 to 85479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,456 DEBUG Processing 318/478 atomic regions from SNP 95350 to 95950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:09,543 DEBUG Processing 314/1035 atomic regions from SNP 93935 to 94535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,566 DEBUG Processing 175/657 atomic regions from SNP 52342 to 52942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,626 DEBUG Processing 384/913 atomic regions from SNP 115092 to 115692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,671 DEBUG Processing 402/868 atomic regions from SNP 120520 to 121120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,710 DEBUG Processing 284/1143 atomic regions from SNP 85179 to 85779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,712 DEBUG Processing 319/478 atomic regions from SNP 95650 to 96250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:09,813 DEBUG Processing 176/657 atomic regions from SNP 52642 to 53242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,820 DEBUG Processing 315/1035 atomic regions from SNP 94235 to 94835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,883 DEBUG Processing 385/913 atomic regions from SNP 115392 to 115992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,934 DEBUG Processing 403/868 atomic regions from SNP 120820 to 121420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,972 DEBUG Processing 320/478 atomic regions from SNP 95950 to 96550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:09,995 DEBUG Processing 285/1143 atomic regions from SNP 85479 to 86079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,065 DEBUG Processing 177/657 atomic regions from SNP 52942 to 53542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,108 DEBUG Processing 316/1035 atomic regions from SNP 94535 to 95135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,152 DEBUG Processing 386/913 atomic regions from SNP 115692 to 116292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,204 DEBUG Processing 404/868 atomic regions from SNP 121120 to 121720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,243 DEBUG Processing 321/478 atomic regions from SNP 96250 to 96850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:10,284 DEBUG Processing 286/1143 atomic regions from SNP 85779 to 86379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,311 DEBUG Processing 178/657 atomic regions from SNP 53242 to 53842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,389 DEBUG Processing 317/1035 atomic regions from SNP 94835 to 95435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,405 DEBUG Processing 387/913 atomic regions from SNP 115992 to 116592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,459 DEBUG Processing 405/868 atomic regions from SNP 121420 to 122020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,499 DEBUG Processing 322/478 atomic regions from SNP 96550 to 97150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:10,556 DEBUG Processing 179/657 atomic regions from SNP 53542 to 54142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,577 DEBUG Processing 287/1143 atomic regions from SNP 86079 to 86679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,658 DEBUG Processing 388/913 atomic regions from SNP 116292 to 116892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,667 DEBUG Processing 318/1035 atomic regions from SNP 95135 to 95735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,726 DEBUG Processing 406/868 atomic regions from SNP 121720 to 122320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,756 DEBUG Processing 323/478 atomic regions from SNP 96850 to 97450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:10,798 DEBUG Processing 180/657 atomic regions from SNP 53842 to 54442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,872 DEBUG Processing 288/1143 atomic regions from SNP 86379 to 86979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,910 DEBUG Processing 389/913 atomic regions from SNP 116592 to 117192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,944 DEBUG Processing 319/1035 atomic regions from SNP 95435 to 96035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,995 DEBUG Processing 407/868 atomic regions from SNP 122020 to 122620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,004 DEBUG Processing 324/478 atomic regions from SNP 97150 to 97750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:11,041 DEBUG Processing 181/657 atomic regions from SNP 54142 to 54742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,163 DEBUG Processing 390/913 atomic regions from SNP 116892 to 117492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,173 DEBUG Processing 289/1143 atomic regions from SNP 86679 to 87279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,229 DEBUG Processing 320/1035 atomic regions from SNP 95735 to 96335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,251 DEBUG Processing 408/868 atomic regions from SNP 122320 to 122920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,257 DEBUG Processing 325/478 atomic regions from SNP 97450 to 98050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:11,294 DEBUG Processing 182/657 atomic regions from SNP 54442 to 55042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,428 DEBUG Processing 391/913 atomic regions from SNP 117192 to 117792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,493 DEBUG Processing 290/1143 atomic regions from SNP 86979 to 87579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,515 DEBUG Processing 409/868 atomic regions from SNP 122620 to 123220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,516 DEBUG Processing 326/478 atomic regions from SNP 97750 to 98350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:11,528 DEBUG Processing 321/1035 atomic regions from SNP 96035 to 96635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,550 DEBUG Processing 183/657 atomic regions from SNP 54742 to 55342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,681 DEBUG Processing 392/913 atomic regions from SNP 117492 to 118092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,764 DEBUG Processing 327/478 atomic regions from SNP 98050 to 98650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:11,779 DEBUG Processing 410/868 atomic regions from SNP 122920 to 123520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,798 DEBUG Processing 184/657 atomic regions from SNP 55042 to 55642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,810 DEBUG Processing 291/1143 atomic regions from SNP 87279 to 87879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,811 DEBUG Processing 322/1035 atomic regions from SNP 96335 to 96935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,933 DEBUG Processing 393/913 atomic regions from SNP 117792 to 118392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,023 DEBUG Processing 328/478 atomic regions from SNP 98350 to 98950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:12,044 DEBUG Processing 185/657 atomic regions from SNP 55342 to 55942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,048 DEBUG Processing 411/868 atomic regions from SNP 123220 to 123820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,096 DEBUG Processing 323/1035 atomic regions from SNP 96635 to 97235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,110 DEBUG Processing 292/1143 atomic regions from SNP 87579 to 88179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,187 DEBUG Processing 394/913 atomic regions from SNP 118092 to 118692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,274 DEBUG Processing 329/478 atomic regions from SNP 98650 to 99250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:12,290 DEBUG Processing 186/657 atomic regions from SNP 55642 to 56242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,302 DEBUG Processing 412/868 atomic regions from SNP 123520 to 124120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,374 DEBUG Processing 324/1035 atomic regions from SNP 96935 to 97535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,407 DEBUG Processing 293/1143 atomic regions from SNP 87879 to 88479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,442 DEBUG Processing 395/913 atomic regions from SNP 118392 to 118992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,516 DEBUG Processing 330/478 atomic regions from SNP 98950 to 99550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:12,534 DEBUG Processing 187/657 atomic regions from SNP 55942 to 56542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,546 DEBUG Processing 413/868 atomic regions from SNP 123820 to 124420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,652 DEBUG Processing 325/1035 atomic regions from SNP 97235 to 97835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,694 DEBUG Processing 294/1143 atomic regions from SNP 88179 to 88779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,700 DEBUG Processing 396/913 atomic regions from SNP 118692 to 119292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,758 DEBUG Processing 331/478 atomic regions from SNP 99250 to 99850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:12,782 DEBUG Processing 188/657 atomic regions from SNP 56242 to 56842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,795 DEBUG Processing 414/868 atomic regions from SNP 124120 to 124720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,925 DEBUG Processing 326/1035 atomic regions from SNP 97535 to 98135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,958 DEBUG Processing 397/913 atomic regions from SNP 118992 to 119592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,990 DEBUG Processing 295/1143 atomic regions from SNP 88479 to 89079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,011 DEBUG Processing 332/478 atomic regions from SNP 99550 to 100150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:13,036 DEBUG Processing 189/657 atomic regions from SNP 56542 to 57142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,049 DEBUG Processing 415/868 atomic regions from SNP 124420 to 125020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,205 DEBUG Processing 327/1035 atomic regions from SNP 97835 to 98435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,214 DEBUG Processing 398/913 atomic regions from SNP 119292 to 119892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,264 DEBUG Processing 333/478 atomic regions from SNP 99850 to 100450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:13,289 DEBUG Processing 296/1143 atomic regions from SNP 88779 to 89379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,296 DEBUG Processing 190/657 atomic regions from SNP 56842 to 57442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,312 DEBUG Processing 416/868 atomic regions from SNP 124720 to 125320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,476 DEBUG Processing 399/913 atomic regions from SNP 119592 to 120192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,491 DEBUG Processing 328/1035 atomic regions from SNP 98135 to 98735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,525 DEBUG Processing 334/478 atomic regions from SNP 100150 to 100750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:13,560 DEBUG Processing 191/657 atomic regions from SNP 57142 to 57742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,572 DEBUG Processing 417/868 atomic regions from SNP 125020 to 125620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,594 DEBUG Processing 297/1143 atomic regions from SNP 89079 to 89679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,734 DEBUG Processing 400/913 atomic regions from SNP 119892 to 120492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,777 DEBUG Processing 335/478 atomic regions from SNP 100450 to 101050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:13,785 DEBUG Processing 329/1035 atomic regions from SNP 98435 to 99035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,817 DEBUG Processing 192/657 atomic regions from SNP 57442 to 58042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,829 DEBUG Processing 418/868 atomic regions from SNP 125320 to 125920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,884 DEBUG Processing 298/1143 atomic regions from SNP 89379 to 89979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,994 DEBUG Processing 401/913 atomic regions from SNP 120192 to 120792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,025 DEBUG Processing 336/478 atomic regions from SNP 100750 to 101350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:14,068 DEBUG Processing 193/657 atomic regions from SNP 57742 to 58342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,070 DEBUG Processing 330/1035 atomic regions from SNP 98735 to 99335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,082 DEBUG Processing 419/868 atomic regions from SNP 125620 to 126220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,164 DEBUG Processing 299/1143 atomic regions from SNP 89679 to 90279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,251 DEBUG Processing 402/913 atomic regions from SNP 120492 to 121092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,272 DEBUG Processing 337/478 atomic regions from SNP 101050 to 101650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:14,319 DEBUG Processing 194/657 atomic regions from SNP 58042 to 58642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,331 DEBUG Processing 420/868 atomic regions from SNP 125920 to 126520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,355 DEBUG Processing 331/1035 atomic regions from SNP 99035 to 99635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,447 DEBUG Processing 300/1143 atomic regions from SNP 89979 to 90579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,510 DEBUG Processing 403/913 atomic regions from SNP 120792 to 121392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,519 DEBUG Processing 338/478 atomic regions from SNP 101350 to 101950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:14,569 DEBUG Processing 195/657 atomic regions from SNP 58342 to 58942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,581 DEBUG Processing 421/868 atomic regions from SNP 126220 to 126820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,632 DEBUG Processing 332/1035 atomic regions from SNP 99335 to 99935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,736 DEBUG Processing 301/1143 atomic regions from SNP 90279 to 90879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,769 DEBUG Processing 404/913 atomic regions from SNP 121092 to 121692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,769 DEBUG Processing 339/478 atomic regions from SNP 101650 to 102250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:14,816 DEBUG Processing 196/657 atomic regions from SNP 58642 to 59242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,828 DEBUG Processing 422/868 atomic regions from SNP 126520 to 127120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,908 DEBUG Processing 333/1035 atomic regions from SNP 99635 to 100235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,018 DEBUG Processing 340/478 atomic regions from SNP 101950 to 102550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:15,027 DEBUG Processing 405/913 atomic regions from SNP 121392 to 121992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,027 DEBUG Processing 302/1143 atomic regions from SNP 90579 to 91179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,069 DEBUG Processing 197/657 atomic regions from SNP 58942 to 59542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,077 DEBUG Processing 423/868 atomic regions from SNP 126820 to 127420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,174 DEBUG Processing 334/1035 atomic regions from SNP 99935 to 100535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,270 DEBUG Processing 341/478 atomic regions from SNP 102250 to 102850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:15,288 DEBUG Processing 406/913 atomic regions from SNP 121692 to 122292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,325 DEBUG Processing 198/657 atomic regions from SNP 59242 to 59842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,326 DEBUG Processing 303/1143 atomic regions from SNP 90879 to 91479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,335 DEBUG Processing 424/868 atomic regions from SNP 127120 to 127720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,449 DEBUG Processing 335/1035 atomic regions from SNP 100235 to 100835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,517 DEBUG Processing 342/478 atomic regions from SNP 102550 to 103150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:15,546 DEBUG Processing 407/913 atomic regions from SNP 121992 to 122592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,578 DEBUG Processing 199/657 atomic regions from SNP 59542 to 60142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,587 DEBUG Processing 425/868 atomic regions from SNP 127420 to 128020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,631 DEBUG Processing 304/1143 atomic regions from SNP 91179 to 91779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,716 DEBUG Processing 336/1035 atomic regions from SNP 100535 to 101135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,760 DEBUG Processing 343/478 atomic regions from SNP 102850 to 103450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:15,803 DEBUG Processing 408/913 atomic regions from SNP 122292 to 122892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,833 DEBUG Processing 200/657 atomic regions from SNP 59842 to 60442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,843 DEBUG Processing 426/868 atomic regions from SNP 127720 to 128320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,940 DEBUG Processing 305/1143 atomic regions from SNP 91479 to 92079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,993 DEBUG Processing 337/1035 atomic regions from SNP 100835 to 101435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,005 DEBUG Processing 344/478 atomic regions from SNP 103150 to 103750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:16,058 DEBUG Processing 409/913 atomic regions from SNP 122592 to 123192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,084 DEBUG Processing 201/657 atomic regions from SNP 60142 to 60742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,102 DEBUG Processing 427/868 atomic regions from SNP 128020 to 128620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,234 DEBUG Processing 306/1143 atomic regions from SNP 91779 to 92379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,264 DEBUG Processing 345/478 atomic regions from SNP 103450 to 104050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:16,271 DEBUG Processing 338/1035 atomic regions from SNP 101135 to 101735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,314 DEBUG Processing 410/913 atomic regions from SNP 122892 to 123492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,336 DEBUG Processing 202/657 atomic regions from SNP 60442 to 61042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,362 DEBUG Processing 428/868 atomic regions from SNP 128320 to 128920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,517 DEBUG Processing 307/1143 atomic regions from SNP 92079 to 92679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,533 DEBUG Processing 346/478 atomic regions from SNP 103750 to 104350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:16,555 DEBUG Processing 339/1035 atomic regions from SNP 101435 to 102035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,566 DEBUG Processing 411/913 atomic regions from SNP 123192 to 123792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,584 DEBUG Processing 203/657 atomic regions from SNP 60742 to 61342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,619 DEBUG Processing 429/868 atomic regions from SNP 128620 to 129220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,796 DEBUG Processing 347/478 atomic regions from SNP 104050 to 104650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:16,803 DEBUG Processing 308/1143 atomic regions from SNP 92379 to 92979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,824 DEBUG Processing 412/913 atomic regions from SNP 123492 to 124092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,836 DEBUG Processing 204/657 atomic regions from SNP 61042 to 61642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,836 DEBUG Processing 340/1035 atomic regions from SNP 101735 to 102335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,886 DEBUG Processing 430/868 atomic regions from SNP 128920 to 129520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,066 DEBUG Processing 348/478 atomic regions from SNP 104350 to 104950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:17,078 DEBUG Processing 413/913 atomic regions from SNP 123792 to 124392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,085 DEBUG Processing 205/657 atomic regions from SNP 61342 to 61942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,090 DEBUG Processing 309/1143 atomic regions from SNP 92679 to 93279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,138 DEBUG Processing 341/1035 atomic regions from SNP 102035 to 102635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,145 DEBUG Processing 431/868 atomic regions from SNP 129220 to 129820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,331 DEBUG Processing 349/478 atomic regions from SNP 104650 to 105250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:17,334 DEBUG Processing 414/913 atomic regions from SNP 124092 to 124692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,339 DEBUG Processing 206/657 atomic regions from SNP 61642 to 62242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,386 DEBUG Processing 310/1143 atomic regions from SNP 92979 to 93579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,404 DEBUG Processing 432/868 atomic regions from SNP 129520 to 130120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,431 DEBUG Processing 342/1035 atomic regions from SNP 102335 to 102935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,577 DEBUG Processing 350/478 atomic regions from SNP 104950 to 105550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:17,584 DEBUG Processing 415/913 atomic regions from SNP 124392 to 124992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,585 DEBUG Processing 207/657 atomic regions from SNP 61942 to 62542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,662 DEBUG Processing 433/868 atomic regions from SNP 129820 to 130420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,678 DEBUG Processing 311/1143 atomic regions from SNP 93279 to 93879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,719 DEBUG Processing 343/1035 atomic regions from SNP 102635 to 103235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,814 DEBUG Processing 351/478 atomic regions from SNP 105250 to 105850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:17,827 DEBUG Processing 208/657 atomic regions from SNP 62242 to 62842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,828 DEBUG Processing 416/913 atomic regions from SNP 124692 to 125292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,914 DEBUG Processing 434/868 atomic regions from SNP 130120 to 130720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,968 DEBUG Processing 312/1143 atomic regions from SNP 93579 to 94179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,001 DEBUG Processing 344/1035 atomic regions from SNP 102935 to 103535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,052 DEBUG Processing 352/478 atomic regions from SNP 105550 to 106150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:18,072 DEBUG Processing 209/657 atomic regions from SNP 62542 to 63142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,076 DEBUG Processing 417/913 atomic regions from SNP 124992 to 125592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,158 DEBUG Processing 435/868 atomic regions from SNP 130420 to 131020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,257 DEBUG Processing 313/1143 atomic regions from SNP 93879 to 94479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,291 DEBUG Processing 345/1035 atomic regions from SNP 103235 to 103835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,302 DEBUG Processing 353/478 atomic regions from SNP 105850 to 106450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:18,319 DEBUG Processing 210/657 atomic regions from SNP 62842 to 63442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,325 DEBUG Processing 418/913 atomic regions from SNP 125292 to 125892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,398 DEBUG Processing 436/868 atomic regions from SNP 130720 to 131320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,553 DEBUG Processing 314/1143 atomic regions from SNP 94179 to 94779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,575 DEBUG Processing 354/478 atomic regions from SNP 106150 to 106750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:18,577 DEBUG Processing 211/657 atomic regions from SNP 63142 to 63742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,579 DEBUG Processing 346/1035 atomic regions from SNP 103535 to 104135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,588 DEBUG Processing 419/913 atomic regions from SNP 125592 to 126192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,641 DEBUG Processing 437/868 atomic regions from SNP 131020 to 131620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,838 DEBUG Processing 212/657 atomic regions from SNP 63442 to 64042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,844 DEBUG Processing 355/478 atomic regions from SNP 106450 to 107050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:18,849 DEBUG Processing 315/1143 atomic regions from SNP 94479 to 95079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,853 DEBUG Processing 420/913 atomic regions from SNP 125892 to 126492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,877 DEBUG Processing 347/1035 atomic regions from SNP 103835 to 104435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,889 DEBUG Processing 438/868 atomic regions from SNP 131320 to 131920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,103 DEBUG Processing 213/657 atomic regions from SNP 63742 to 64342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,122 DEBUG Processing 421/913 atomic regions from SNP 126192 to 126792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,123 DEBUG Processing 356/478 atomic regions from SNP 106750 to 107350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:19,149 DEBUG Processing 439/868 atomic regions from SNP 131620 to 132220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,153 DEBUG Processing 316/1143 atomic regions from SNP 94779 to 95379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,166 DEBUG Processing 348/1035 atomic regions from SNP 104135 to 104735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,359 DEBUG Processing 214/657 atomic regions from SNP 64042 to 64642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,379 DEBUG Processing 357/478 atomic regions from SNP 107050 to 107650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:19,388 DEBUG Processing 422/913 atomic regions from SNP 126492 to 127092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,414 DEBUG Processing 440/868 atomic regions from SNP 131920 to 132520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,450 DEBUG Processing 317/1143 atomic regions from SNP 95079 to 95679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,458 DEBUG Processing 349/1035 atomic regions from SNP 104435 to 105035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,610 DEBUG Processing 215/657 atomic regions from SNP 64342 to 64942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,644 DEBUG Processing 358/478 atomic regions from SNP 107350 to 107950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:19,650 DEBUG Processing 423/913 atomic regions from SNP 126792 to 127392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,676 DEBUG Processing 441/868 atomic regions from SNP 132220 to 132820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,740 DEBUG Processing 350/1035 atomic regions from SNP 104735 to 105335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,741 DEBUG Processing 318/1143 atomic regions from SNP 95379 to 95979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,857 DEBUG Processing 216/657 atomic regions from SNP 64642 to 65242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,911 DEBUG Processing 424/913 atomic regions from SNP 127092 to 127692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,923 DEBUG Processing 359/478 atomic regions from SNP 107650 to 108250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:19,933 DEBUG Processing 442/868 atomic regions from SNP 132520 to 133120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,024 DEBUG Processing 351/1035 atomic regions from SNP 105035 to 105635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,028 DEBUG Processing 319/1143 atomic regions from SNP 95679 to 96279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,097 DEBUG Processing 217/657 atomic regions from SNP 64942 to 65542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,170 DEBUG Processing 425/913 atomic regions from SNP 127392 to 127992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,196 DEBUG Processing 443/868 atomic regions from SNP 132820 to 133420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,197 DEBUG Processing 360/478 atomic regions from SNP 107950 to 108550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:20,310 DEBUG Processing 352/1035 atomic regions from SNP 105335 to 105935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,323 DEBUG Processing 320/1143 atomic regions from SNP 95979 to 96579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,345 DEBUG Processing 218/657 atomic regions from SNP 65242 to 65842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,423 DEBUG Processing 426/913 atomic regions from SNP 127692 to 128292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,449 DEBUG Processing 444/868 atomic regions from SNP 133120 to 133720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,458 DEBUG Processing 361/478 atomic regions from SNP 108250 to 108850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:20,591 DEBUG Processing 219/657 atomic regions from SNP 65542 to 66142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,595 DEBUG Processing 353/1035 atomic regions from SNP 105635 to 106235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,607 DEBUG Processing 321/1143 atomic regions from SNP 96279 to 96879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,673 DEBUG Processing 427/913 atomic regions from SNP 127992 to 128592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,698 DEBUG Processing 445/868 atomic regions from SNP 133420 to 134020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,721 DEBUG Processing 362/478 atomic regions from SNP 108550 to 109150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:20,839 DEBUG Processing 220/657 atomic regions from SNP 65842 to 66442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,872 DEBUG Processing 354/1035 atomic regions from SNP 105935 to 106535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,902 DEBUG Processing 322/1143 atomic regions from SNP 96579 to 97179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,927 DEBUG Processing 428/913 atomic regions from SNP 128292 to 128892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,949 DEBUG Processing 446/868 atomic regions from SNP 133720 to 134320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,985 DEBUG Processing 363/478 atomic regions from SNP 108850 to 109450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:21,084 DEBUG Processing 221/657 atomic regions from SNP 66142 to 66742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,164 DEBUG Processing 355/1035 atomic regions from SNP 106235 to 106835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,188 DEBUG Processing 429/913 atomic regions from SNP 128592 to 129192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,204 DEBUG Processing 447/868 atomic regions from SNP 134020 to 134620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,210 DEBUG Processing 323/1143 atomic regions from SNP 96879 to 97479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,252 DEBUG Processing 364/478 atomic regions from SNP 109150 to 109750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:21,325 DEBUG Processing 222/657 atomic regions from SNP 66442 to 67042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,449 DEBUG Processing 430/913 atomic regions from SNP 128892 to 129492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,451 DEBUG Processing 356/1035 atomic regions from SNP 106535 to 107135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,467 DEBUG Processing 448/868 atomic regions from SNP 134320 to 134920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,520 DEBUG Processing 365/478 atomic regions from SNP 109450 to 110050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:21,521 DEBUG Processing 324/1143 atomic regions from SNP 97179 to 97779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,561 DEBUG Processing 223/657 atomic regions from SNP 66742 to 67342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,713 DEBUG Processing 431/913 atomic regions from SNP 129192 to 129792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,728 DEBUG Processing 449/868 atomic regions from SNP 134620 to 135220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,744 DEBUG Processing 357/1035 atomic regions from SNP 106835 to 107435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,784 DEBUG Processing 366/478 atomic regions from SNP 109750 to 110350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:21,804 DEBUG Processing 224/657 atomic regions from SNP 67042 to 67642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,830 DEBUG Processing 325/1143 atomic regions from SNP 97479 to 98079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,978 DEBUG Processing 432/913 atomic regions from SNP 129492 to 130092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,994 DEBUG Processing 450/868 atomic regions from SNP 134920 to 135520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,034 DEBUG Processing 358/1035 atomic regions from SNP 107135 to 107735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,052 DEBUG Processing 367/478 atomic regions from SNP 110050 to 110650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:22,059 DEBUG Processing 225/657 atomic regions from SNP 67342 to 67942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,122 DEBUG Processing 326/1143 atomic regions from SNP 97779 to 98379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,232 DEBUG Processing 433/913 atomic regions from SNP 129792 to 130392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,252 DEBUG Processing 451/868 atomic regions from SNP 135220 to 135820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,315 DEBUG Processing 226/657 atomic regions from SNP 67642 to 68242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,320 DEBUG Processing 368/478 atomic regions from SNP 110350 to 110950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:22,328 DEBUG Processing 359/1035 atomic regions from SNP 107435 to 108035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,418 DEBUG Processing 327/1143 atomic regions from SNP 98079 to 98679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,493 DEBUG Processing 434/913 atomic regions from SNP 130092 to 130692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,512 DEBUG Processing 452/868 atomic regions from SNP 135520 to 136120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,578 DEBUG Processing 227/657 atomic regions from SNP 67942 to 68542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,585 DEBUG Processing 369/478 atomic regions from SNP 110650 to 111250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:22,625 DEBUG Processing 360/1035 atomic regions from SNP 107735 to 108335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,728 DEBUG Processing 328/1143 atomic regions from SNP 98379 to 98979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,745 DEBUG Processing 435/913 atomic regions from SNP 130392 to 130992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,766 DEBUG Processing 453/868 atomic regions from SNP 135820 to 136420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,828 DEBUG Processing 228/657 atomic regions from SNP 68242 to 68842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,833 DEBUG Processing 370/478 atomic regions from SNP 110950 to 111550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:22,906 DEBUG Processing 361/1035 atomic regions from SNP 108035 to 108635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,998 DEBUG Processing 436/913 atomic regions from SNP 130692 to 131292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,018 DEBUG Processing 454/868 atomic regions from SNP 136120 to 136720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,036 DEBUG Processing 329/1143 atomic regions from SNP 98679 to 99279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,074 DEBUG Processing 229/657 atomic regions from SNP 68542 to 69142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,090 DEBUG Processing 371/478 atomic regions from SNP 111250 to 111850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:23,181 DEBUG Processing 362/1035 atomic regions from SNP 108335 to 108935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,252 DEBUG Processing 437/913 atomic regions from SNP 130992 to 131592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,275 DEBUG Processing 455/868 atomic regions from SNP 136420 to 137020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,326 DEBUG Processing 230/657 atomic regions from SNP 68842 to 69442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,352 DEBUG Processing 330/1143 atomic regions from SNP 98979 to 99579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,357 DEBUG Processing 372/478 atomic regions from SNP 111550 to 112150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:23,458 DEBUG Processing 363/1035 atomic regions from SNP 108635 to 109235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,510 DEBUG Processing 438/913 atomic regions from SNP 131292 to 131892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,530 DEBUG Processing 456/868 atomic regions from SNP 136720 to 137320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,581 DEBUG Processing 231/657 atomic regions from SNP 69142 to 69742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,622 DEBUG Processing 373/478 atomic regions from SNP 111850 to 112450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:23,673 DEBUG Processing 331/1143 atomic regions from SNP 99279 to 99879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,736 DEBUG Processing 364/1035 atomic regions from SNP 108935 to 109535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,770 DEBUG Processing 439/913 atomic regions from SNP 131592 to 132192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,782 DEBUG Processing 457/868 atomic regions from SNP 137020 to 137620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,830 DEBUG Processing 232/657 atomic regions from SNP 69442 to 70042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,882 DEBUG Processing 374/478 atomic regions from SNP 112150 to 112750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:23,985 DEBUG Processing 332/1143 atomic regions from SNP 99579 to 100179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,012 DEBUG Processing 365/1035 atomic regions from SNP 109235 to 109835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,024 DEBUG Processing 440/913 atomic regions from SNP 131892 to 132492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,032 DEBUG Processing 458/868 atomic regions from SNP 137320 to 137920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,082 DEBUG Processing 233/657 atomic regions from SNP 69742 to 70342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,136 DEBUG Processing 375/478 atomic regions from SNP 112450 to 113050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:24,285 DEBUG Processing 333/1143 atomic regions from SNP 99879 to 100479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,286 DEBUG Processing 459/868 atomic regions from SNP 137620 to 138220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,287 DEBUG Processing 366/1035 atomic regions from SNP 109535 to 110135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,291 DEBUG Processing 441/913 atomic regions from SNP 132192 to 132792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,331 DEBUG Processing 234/657 atomic regions from SNP 70042 to 70642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,377 DEBUG Processing 376/478 atomic regions from SNP 112750 to 113350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:24,540 DEBUG Processing 460/868 atomic regions from SNP 137920 to 138520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,548 DEBUG Processing 442/913 atomic regions from SNP 132492 to 133092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,568 DEBUG Processing 367/1035 atomic regions from SNP 109835 to 110435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,583 DEBUG Processing 235/657 atomic regions from SNP 70342 to 70942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,595 DEBUG Processing 334/1143 atomic regions from SNP 100179 to 100779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,621 DEBUG Processing 377/478 atomic regions from SNP 113050 to 113650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:24,790 DEBUG Processing 461/868 atomic regions from SNP 138220 to 138820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,799 DEBUG Processing 443/913 atomic regions from SNP 132792 to 133392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,835 DEBUG Processing 236/657 atomic regions from SNP 70642 to 71242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,849 DEBUG Processing 368/1035 atomic regions from SNP 110135 to 110735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,867 DEBUG Processing 378/478 atomic regions from SNP 113350 to 113950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:24,910 DEBUG Processing 335/1143 atomic regions from SNP 100479 to 101079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,039 DEBUG Processing 462/868 atomic regions from SNP 138520 to 139120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,051 DEBUG Processing 444/913 atomic regions from SNP 133092 to 133692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,084 DEBUG Processing 237/657 atomic regions from SNP 70942 to 71542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,114 DEBUG Processing 379/478 atomic regions from SNP 113650 to 114250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:25,132 DEBUG Processing 369/1035 atomic regions from SNP 110435 to 111035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,209 DEBUG Processing 336/1143 atomic regions from SNP 100779 to 101379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,284 DEBUG Processing 463/868 atomic regions from SNP 138820 to 139420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,300 DEBUG Processing 445/913 atomic regions from SNP 133392 to 133992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,330 DEBUG Processing 238/657 atomic regions from SNP 71242 to 71842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,360 DEBUG Processing 380/478 atomic regions from SNP 113950 to 114550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:25,411 DEBUG Processing 370/1035 atomic regions from SNP 110735 to 111335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,496 DEBUG Processing 337/1143 atomic regions from SNP 101079 to 101679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,528 DEBUG Processing 464/868 atomic regions from SNP 139120 to 139720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,549 DEBUG Processing 446/913 atomic regions from SNP 133692 to 134292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,574 DEBUG Processing 239/657 atomic regions from SNP 71542 to 72142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,603 DEBUG Processing 381/478 atomic regions from SNP 114250 to 114850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:25,691 DEBUG Processing 371/1035 atomic regions from SNP 111035 to 111635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,779 DEBUG Processing 465/868 atomic regions from SNP 139420 to 140020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,788 DEBUG Processing 338/1143 atomic regions from SNP 101379 to 101979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,802 DEBUG Processing 447/913 atomic regions from SNP 133992 to 134592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,816 DEBUG Processing 240/657 atomic regions from SNP 71842 to 72442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,840 DEBUG Processing 382/478 atomic regions from SNP 114550 to 115150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:25,971 DEBUG Processing 372/1035 atomic regions from SNP 111335 to 111935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,031 DEBUG Processing 466/868 atomic regions from SNP 139720 to 140320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,055 DEBUG Processing 448/913 atomic regions from SNP 134292 to 134892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,061 DEBUG Processing 241/657 atomic regions from SNP 72142 to 72742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,077 DEBUG Processing 383/478 atomic regions from SNP 114850 to 115450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:26,080 DEBUG Processing 339/1143 atomic regions from SNP 101679 to 102279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,247 DEBUG Processing 373/1035 atomic regions from SNP 111635 to 112235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,290 DEBUG Processing 467/868 atomic regions from SNP 140020 to 140620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,316 DEBUG Processing 242/657 atomic regions from SNP 72442 to 73042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,317 DEBUG Processing 449/913 atomic regions from SNP 134592 to 135192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,322 DEBUG Processing 384/478 atomic regions from SNP 115150 to 115750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:26,373 DEBUG Processing 340/1143 atomic regions from SNP 101979 to 102579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,521 DEBUG Processing 374/1035 atomic regions from SNP 111935 to 112535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,548 DEBUG Processing 468/868 atomic regions from SNP 140320 to 140920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,569 DEBUG Processing 243/657 atomic regions from SNP 72742 to 73342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,574 DEBUG Processing 450/913 atomic regions from SNP 134892 to 135492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,575 DEBUG Processing 385/478 atomic regions from SNP 115450 to 116050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:26,663 DEBUG Processing 341/1143 atomic regions from SNP 102279 to 102879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,791 DEBUG Processing 375/1035 atomic regions from SNP 112235 to 112835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,802 DEBUG Processing 469/868 atomic regions from SNP 140620 to 141220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,819 DEBUG Processing 244/657 atomic regions from SNP 73042 to 73642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,831 DEBUG Processing 451/913 atomic regions from SNP 135192 to 135792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,836 DEBUG Processing 386/478 atomic regions from SNP 115750 to 116350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:26,952 DEBUG Processing 342/1143 atomic regions from SNP 102579 to 103179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,045 DEBUG Processing 470/868 atomic regions from SNP 140920 to 141520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,060 DEBUG Processing 376/1035 atomic regions from SNP 112535 to 113135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,064 DEBUG Processing 245/657 atomic regions from SNP 73342 to 73942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,083 DEBUG Processing 452/913 atomic regions from SNP 135492 to 136092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,097 DEBUG Processing 387/478 atomic regions from SNP 116050 to 116650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:27,243 DEBUG Processing 343/1143 atomic regions from SNP 102879 to 103479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,293 DEBUG Processing 471/868 atomic regions from SNP 141220 to 141820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,311 DEBUG Processing 246/657 atomic regions from SNP 73642 to 74242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,337 DEBUG Processing 453/913 atomic regions from SNP 135792 to 136392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,338 DEBUG Processing 377/1035 atomic regions from SNP 112835 to 113435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,345 DEBUG Processing 388/478 atomic regions from SNP 116350 to 116950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:27,527 DEBUG Processing 344/1143 atomic regions from SNP 103179 to 103779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,543 DEBUG Processing 472/868 atomic regions from SNP 141520 to 142120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,558 DEBUG Processing 247/657 atomic regions from SNP 73942 to 74542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,588 DEBUG Processing 389/478 atomic regions from SNP 116650 to 117250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:27,595 DEBUG Processing 454/913 atomic regions from SNP 136092 to 136692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,615 DEBUG Processing 378/1035 atomic regions from SNP 113135 to 113735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,792 DEBUG Processing 473/868 atomic regions from SNP 141820 to 142420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,803 DEBUG Processing 248/657 atomic regions from SNP 74242 to 74842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,814 DEBUG Processing 345/1143 atomic regions from SNP 103479 to 104079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,833 DEBUG Processing 390/478 atomic regions from SNP 116950 to 117550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:27,851 DEBUG Processing 455/913 atomic regions from SNP 136392 to 136992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,897 DEBUG Processing 379/1035 atomic regions from SNP 113435 to 114035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,041 DEBUG Processing 474/868 atomic regions from SNP 142120 to 142720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,055 DEBUG Processing 249/657 atomic regions from SNP 74542 to 75142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,082 DEBUG Processing 391/478 atomic regions from SNP 117250 to 117850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:28,103 DEBUG Processing 346/1143 atomic regions from SNP 103779 to 104379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,108 DEBUG Processing 456/913 atomic regions from SNP 136692 to 137292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,180 DEBUG Processing 380/1035 atomic regions from SNP 113735 to 114335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,290 DEBUG Processing 475/868 atomic regions from SNP 142420 to 143020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,312 DEBUG Processing 250/657 atomic regions from SNP 74842 to 75442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,332 DEBUG Processing 392/478 atomic regions from SNP 117550 to 118150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:28,367 DEBUG Processing 457/913 atomic regions from SNP 136992 to 137592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,396 DEBUG Processing 347/1143 atomic regions from SNP 104079 to 104679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,459 DEBUG Processing 381/1035 atomic regions from SNP 114035 to 114635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,543 DEBUG Processing 476/868 atomic regions from SNP 142720 to 143320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,575 DEBUG Processing 251/657 atomic regions from SNP 75142 to 75742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,585 DEBUG Processing 393/478 atomic regions from SNP 117850 to 118450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:28,633 DEBUG Processing 458/913 atomic regions from SNP 137292 to 137892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,699 DEBUG Processing 348/1143 atomic regions from SNP 104379 to 104979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,747 DEBUG Processing 382/1035 atomic regions from SNP 114335 to 114935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,795 DEBUG Processing 477/868 atomic regions from SNP 143020 to 143620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,827 DEBUG Processing 252/657 atomic regions from SNP 75442 to 76042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,831 DEBUG Processing 394/478 atomic regions from SNP 118150 to 118750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:28,887 DEBUG Processing 459/913 atomic regions from SNP 137592 to 138192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,988 DEBUG Processing 349/1143 atomic regions from SNP 104679 to 105279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,030 DEBUG Processing 383/1035 atomic regions from SNP 114635 to 115235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,051 DEBUG Processing 478/868 atomic regions from SNP 143320 to 143920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,078 DEBUG Processing 253/657 atomic regions from SNP 75742 to 76342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,080 DEBUG Processing 395/478 atomic regions from SNP 118450 to 119050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:29,139 DEBUG Processing 460/913 atomic regions from SNP 137892 to 138492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,277 DEBUG Processing 350/1143 atomic regions from SNP 104979 to 105579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,314 DEBUG Processing 479/868 atomic regions from SNP 143620 to 144220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,321 DEBUG Processing 384/1035 atomic regions from SNP 114935 to 115535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,334 DEBUG Processing 396/478 atomic regions from SNP 118750 to 119350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:29,335 DEBUG Processing 254/657 atomic regions from SNP 76042 to 76642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,395 DEBUG Processing 461/913 atomic regions from SNP 138192 to 138792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,573 DEBUG Processing 480/868 atomic regions from SNP 143920 to 144520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,586 DEBUG Processing 397/478 atomic regions from SNP 119050 to 119650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:29,586 DEBUG Processing 351/1143 atomic regions from SNP 105279 to 105879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,593 DEBUG Processing 255/657 atomic regions from SNP 76342 to 76942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,609 DEBUG Processing 385/1035 atomic regions from SNP 115235 to 115835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,656 DEBUG Processing 462/913 atomic regions from SNP 138492 to 139092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,824 DEBUG Processing 481/868 atomic regions from SNP 144220 to 144820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,834 DEBUG Processing 398/478 atomic regions from SNP 119350 to 119950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:29,849 DEBUG Processing 256/657 atomic regions from SNP 76642 to 77242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,896 DEBUG Processing 386/1035 atomic regions from SNP 115535 to 116135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,914 DEBUG Processing 352/1143 atomic regions from SNP 105579 to 106179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,918 DEBUG Processing 463/913 atomic regions from SNP 138792 to 139392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,064 DEBUG Processing 482/868 atomic regions from SNP 144520 to 145120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,071 DEBUG Processing 399/478 atomic regions from SNP 119650 to 120250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:30,094 DEBUG Processing 257/657 atomic regions from SNP 76942 to 77542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,181 DEBUG Processing 464/913 atomic regions from SNP 139092 to 139692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,183 DEBUG Processing 387/1035 atomic regions from SNP 115835 to 116435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,238 DEBUG Processing 353/1143 atomic regions from SNP 105879 to 106479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,315 DEBUG Processing 400/478 atomic regions from SNP 119950 to 120550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:30,316 DEBUG Processing 483/868 atomic regions from SNP 144820 to 145420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,342 DEBUG Processing 258/657 atomic regions from SNP 77242 to 77842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,449 DEBUG Processing 465/913 atomic regions from SNP 139392 to 139992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,469 DEBUG Processing 388/1035 atomic regions from SNP 116135 to 116735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,564 DEBUG Processing 401/478 atomic regions from SNP 120250 to 120850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:30,565 DEBUG Processing 354/1143 atomic regions from SNP 106179 to 106779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,570 DEBUG Processing 484/868 atomic regions from SNP 145120 to 145720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,591 DEBUG Processing 259/657 atomic regions from SNP 77542 to 78142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,704 DEBUG Processing 466/913 atomic regions from SNP 139692 to 140292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,741 DEBUG Processing 389/1035 atomic regions from SNP 116435 to 117035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,826 DEBUG Processing 402/478 atomic regions from SNP 120550 to 121150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:30,834 DEBUG Processing 485/868 atomic regions from SNP 145420 to 146020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,847 DEBUG Processing 260/657 atomic regions from SNP 77842 to 78442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,868 DEBUG Processing 355/1143 atomic regions from SNP 106479 to 107079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,956 DEBUG Processing 467/913 atomic regions from SNP 139992 to 140592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,005 DEBUG Processing 390/1035 atomic regions from SNP 116735 to 117335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,085 DEBUG Processing 403/478 atomic regions from SNP 120850 to 121450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:31,098 DEBUG Processing 486/868 atomic regions from SNP 145720 to 146320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,111 DEBUG Processing 261/657 atomic regions from SNP 78142 to 78742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,169 DEBUG Processing 356/1143 atomic regions from SNP 106779 to 107379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,229 DEBUG Processing 468/913 atomic regions from SNP 140292 to 140892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,276 DEBUG Processing 391/1035 atomic regions from SNP 117035 to 117635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,346 DEBUG Processing 404/478 atomic regions from SNP 121150 to 121750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:31,372 DEBUG Processing 487/868 atomic regions from SNP 146020 to 146620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,377 DEBUG Processing 262/657 atomic regions from SNP 78442 to 79042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,473 DEBUG Processing 357/1143 atomic regions from SNP 107079 to 107679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,497 DEBUG Processing 469/913 atomic regions from SNP 140592 to 141192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,536 DEBUG Processing 392/1035 atomic regions from SNP 117335 to 117935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,584 DEBUG Processing 405/478 atomic regions from SNP 121450 to 122050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:31,627 DEBUG Processing 488/868 atomic regions from SNP 146320 to 146920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,628 DEBUG Processing 263/657 atomic regions from SNP 78742 to 79342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,763 DEBUG Processing 470/913 atomic regions from SNP 140892 to 141492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,768 DEBUG Processing 358/1143 atomic regions from SNP 107379 to 107979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,808 DEBUG Processing 393/1035 atomic regions from SNP 117635 to 118235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,816 DEBUG Processing 406/478 atomic regions from SNP 121750 to 122350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:31,869 DEBUG Processing 264/657 atomic regions from SNP 79042 to 79642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,874 DEBUG Processing 489/868 atomic regions from SNP 146620 to 147220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,021 DEBUG Processing 471/913 atomic regions from SNP 141192 to 141792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,058 DEBUG Processing 407/478 atomic regions from SNP 122050 to 122650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:32,064 DEBUG Processing 359/1143 atomic regions from SNP 107679 to 108279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,084 DEBUG Processing 394/1035 atomic regions from SNP 117935 to 118535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,113 DEBUG Processing 265/657 atomic regions from SNP 79342 to 79942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,117 DEBUG Processing 490/868 atomic regions from SNP 146920 to 147520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,289 DEBUG Processing 472/913 atomic regions from SNP 141492 to 142092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,309 DEBUG Processing 408/478 atomic regions from SNP 122350 to 122950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:32,362 DEBUG Processing 266/657 atomic regions from SNP 79642 to 80242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,366 DEBUG Processing 395/1035 atomic regions from SNP 118235 to 118835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,367 DEBUG Processing 491/868 atomic regions from SNP 147220 to 147820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,381 DEBUG Processing 360/1143 atomic regions from SNP 107979 to 108579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,562 DEBUG Processing 473/913 atomic regions from SNP 141792 to 142392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,565 DEBUG Processing 409/478 atomic regions from SNP 122650 to 123250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:32,620 DEBUG Processing 267/657 atomic regions from SNP 79942 to 80542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,626 DEBUG Processing 492/868 atomic regions from SNP 147520 to 148120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,652 DEBUG Processing 396/1035 atomic regions from SNP 118535 to 119135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,688 DEBUG Processing 361/1143 atomic regions from SNP 108279 to 108879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,819 DEBUG Processing 410/478 atomic regions from SNP 122950 to 123550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:32,832 DEBUG Processing 474/913 atomic regions from SNP 142092 to 142692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,876 DEBUG Processing 268/657 atomic regions from SNP 80242 to 80842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,880 DEBUG Processing 493/868 atomic regions from SNP 147820 to 148420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,932 DEBUG Processing 397/1035 atomic regions from SNP 118835 to 119435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,986 DEBUG Processing 362/1143 atomic regions from SNP 108579 to 109179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,070 DEBUG Processing 411/478 atomic regions from SNP 123250 to 123850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:33,105 DEBUG Processing 475/913 atomic regions from SNP 142392 to 142992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,133 DEBUG Processing 269/657 atomic regions from SNP 80542 to 81142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,135 DEBUG Processing 494/868 atomic regions from SNP 148120 to 148720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,211 DEBUG Processing 398/1035 atomic regions from SNP 119135 to 119735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,297 DEBUG Processing 363/1143 atomic regions from SNP 108879 to 109479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,315 DEBUG Processing 412/478 atomic regions from SNP 123550 to 124150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:33,388 DEBUG Processing 270/657 atomic regions from SNP 80842 to 81442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,390 DEBUG Processing 495/868 atomic regions from SNP 148420 to 149020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,391 DEBUG Processing 476/913 atomic regions from SNP 142692 to 143292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,489 DEBUG Processing 399/1035 atomic regions from SNP 119435 to 120035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,558 DEBUG Processing 413/478 atomic regions from SNP 123850 to 124450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:33,615 DEBUG Processing 364/1143 atomic regions from SNP 109179 to 109779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,643 DEBUG Processing 271/657 atomic regions from SNP 81142 to 81742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,645 DEBUG Processing 496/868 atomic regions from SNP 148720 to 149320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,676 DEBUG Processing 477/913 atomic regions from SNP 142992 to 143592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,768 DEBUG Processing 400/1035 atomic regions from SNP 119735 to 120335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,796 DEBUG Processing 414/478 atomic regions from SNP 124150 to 124750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:33,893 DEBUG Processing 272/657 atomic regions from SNP 81442 to 82042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,900 DEBUG Processing 497/868 atomic regions from SNP 149020 to 149620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,924 DEBUG Processing 365/1143 atomic regions from SNP 109479 to 110079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,966 DEBUG Processing 478/913 atomic regions from SNP 143292 to 143892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,035 DEBUG Processing 415/478 atomic regions from SNP 124450 to 125050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:34,050 DEBUG Processing 401/1035 atomic regions from SNP 120035 to 120635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,140 DEBUG Processing 273/657 atomic regions from SNP 81742 to 82342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,149 DEBUG Processing 498/868 atomic regions from SNP 149320 to 149920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,237 DEBUG Processing 366/1143 atomic regions from SNP 109779 to 110379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,253 DEBUG Processing 479/913 atomic regions from SNP 143592 to 144192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,278 DEBUG Processing 416/478 atomic regions from SNP 124750 to 125350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:34,332 DEBUG Processing 402/1035 atomic regions from SNP 120335 to 120935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,384 DEBUG Processing 274/657 atomic regions from SNP 82042 to 82642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,395 DEBUG Processing 499/868 atomic regions from SNP 149620 to 150220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,528 DEBUG Processing 480/913 atomic regions from SNP 143892 to 144492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,532 DEBUG Processing 417/478 atomic regions from SNP 125050 to 125650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:34,548 DEBUG Processing 367/1143 atomic regions from SNP 110079 to 110679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,615 DEBUG Processing 403/1035 atomic regions from SNP 120635 to 121235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,627 DEBUG Processing 275/657 atomic regions from SNP 82342 to 82942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,640 DEBUG Processing 500/868 atomic regions from SNP 149920 to 150520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,780 DEBUG Processing 418/478 atomic regions from SNP 125350 to 125950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:34,793 DEBUG Processing 481/913 atomic regions from SNP 144192 to 144792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,840 DEBUG Processing 368/1143 atomic regions from SNP 110379 to 110979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,876 DEBUG Processing 276/657 atomic regions from SNP 82642 to 83242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,890 DEBUG Processing 501/868 atomic regions from SNP 150220 to 150820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,901 DEBUG Processing 404/1035 atomic regions from SNP 120935 to 121535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,023 DEBUG Processing 419/478 atomic regions from SNP 125650 to 126250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:35,053 DEBUG Processing 482/913 atomic regions from SNP 144492 to 145092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,129 DEBUG Processing 277/657 atomic regions from SNP 82942 to 83542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,132 DEBUG Processing 369/1143 atomic regions from SNP 110679 to 111279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,144 DEBUG Processing 502/868 atomic regions from SNP 150520 to 151120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,188 DEBUG Processing 405/1035 atomic regions from SNP 121235 to 121835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,263 DEBUG Processing 420/478 atomic regions from SNP 125950 to 126550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:35,327 DEBUG Processing 483/913 atomic regions from SNP 144792 to 145392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,381 DEBUG Processing 278/657 atomic regions from SNP 83242 to 83842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,400 DEBUG Processing 503/868 atomic regions from SNP 150820 to 151420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,425 DEBUG Processing 370/1143 atomic regions from SNP 110979 to 111579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,471 DEBUG Processing 406/1035 atomic regions from SNP 121535 to 122135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,507 DEBUG Processing 421/478 atomic regions from SNP 126250 to 126850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:35,597 DEBUG Processing 484/913 atomic regions from SNP 145092 to 145692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,627 DEBUG Processing 279/657 atomic regions from SNP 83542 to 84142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,650 DEBUG Processing 504/868 atomic regions from SNP 151120 to 151720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,718 DEBUG Processing 371/1143 atomic regions from SNP 111279 to 111879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,754 DEBUG Processing 422/478 atomic regions from SNP 126550 to 127150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:35,758 DEBUG Processing 407/1035 atomic regions from SNP 121835 to 122435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,866 DEBUG Processing 280/657 atomic regions from SNP 83842 to 84442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,867 DEBUG Processing 485/913 atomic regions from SNP 145392 to 145992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,894 DEBUG Processing 505/868 atomic regions from SNP 151420 to 152020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,006 DEBUG Processing 423/478 atomic regions from SNP 126850 to 127450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:36,011 DEBUG Processing 372/1143 atomic regions from SNP 111579 to 112179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,042 DEBUG Processing 408/1035 atomic regions from SNP 122135 to 122735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,112 DEBUG Processing 281/657 atomic regions from SNP 84142 to 84742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,125 DEBUG Processing 486/913 atomic regions from SNP 145692 to 146292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,138 DEBUG Processing 506/868 atomic regions from SNP 151720 to 152320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,255 DEBUG Processing 424/478 atomic regions from SNP 127150 to 127750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:36,305 DEBUG Processing 373/1143 atomic regions from SNP 111879 to 112479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,341 DEBUG Processing 409/1035 atomic regions from SNP 122435 to 123035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,368 DEBUG Processing 282/657 atomic regions from SNP 84442 to 85042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,390 DEBUG Processing 507/868 atomic regions from SNP 152020 to 152620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,398 DEBUG Processing 487/913 atomic regions from SNP 145992 to 146592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,497 DEBUG Processing 425/478 atomic regions from SNP 127450 to 128050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:36,598 DEBUG Processing 374/1143 atomic regions from SNP 112179 to 112779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,631 DEBUG Processing 283/657 atomic regions from SNP 84742 to 85342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,636 DEBUG Processing 410/1035 atomic regions from SNP 122735 to 123335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,653 DEBUG Processing 508/868 atomic regions from SNP 152320 to 152920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,683 DEBUG Processing 488/913 atomic regions from SNP 146292 to 146892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,729 DEBUG Processing 426/478 atomic regions from SNP 127750 to 128350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:36,891 DEBUG Processing 375/1143 atomic regions from SNP 112479 to 113079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,892 DEBUG Processing 284/657 atomic regions from SNP 85042 to 85642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,916 DEBUG Processing 509/868 atomic regions from SNP 152620 to 153220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,930 DEBUG Processing 411/1035 atomic regions from SNP 123035 to 123635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,972 DEBUG Processing 427/478 atomic regions from SNP 128050 to 128650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:36,974 DEBUG Processing 489/913 atomic regions from SNP 146592 to 147192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,148 DEBUG Processing 285/657 atomic regions from SNP 85342 to 85942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,179 DEBUG Processing 510/868 atomic regions from SNP 152920 to 153520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,189 DEBUG Processing 376/1143 atomic regions from SNP 112779 to 113379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,226 DEBUG Processing 428/478 atomic regions from SNP 128350 to 128950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:37,230 DEBUG Processing 412/1035 atomic regions from SNP 123335 to 123935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,271 DEBUG Processing 490/913 atomic regions from SNP 146892 to 147492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,394 DEBUG Processing 286/657 atomic regions from SNP 85642 to 86242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,437 DEBUG Processing 511/868 atomic regions from SNP 153220 to 153820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,482 DEBUG Processing 429/478 atomic regions from SNP 128650 to 129250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:37,492 DEBUG Processing 377/1143 atomic regions from SNP 113079 to 113679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,532 DEBUG Processing 413/1035 atomic regions from SNP 123635 to 124235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,569 DEBUG Processing 491/913 atomic regions from SNP 147192 to 147792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,637 DEBUG Processing 287/657 atomic regions from SNP 85942 to 86542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,688 DEBUG Processing 512/868 atomic regions from SNP 153520 to 154120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,731 DEBUG Processing 430/478 atomic regions from SNP 128950 to 129550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:37,789 DEBUG Processing 378/1143 atomic regions from SNP 113379 to 113979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,824 DEBUG Processing 414/1035 atomic regions from SNP 123935 to 124535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,865 DEBUG Processing 492/913 atomic regions from SNP 147492 to 148092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,883 DEBUG Processing 288/657 atomic regions from SNP 86242 to 86842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,938 DEBUG Processing 513/868 atomic regions from SNP 153820 to 154420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,975 DEBUG Processing 431/478 atomic regions from SNP 129250 to 129850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:38,075 DEBUG Processing 379/1143 atomic regions from SNP 113679 to 114279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,113 DEBUG Processing 415/1035 atomic regions from SNP 124235 to 124835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,135 DEBUG Processing 289/657 atomic regions from SNP 86542 to 87142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,158 DEBUG Processing 493/913 atomic regions from SNP 147792 to 148392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,195 DEBUG Processing 514/868 atomic regions from SNP 154120 to 154720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,218 DEBUG Processing 432/478 atomic regions from SNP 129550 to 130150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:38,358 DEBUG Processing 380/1143 atomic regions from SNP 113979 to 114579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,384 DEBUG Processing 290/657 atomic regions from SNP 86842 to 87442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,404 DEBUG Processing 416/1035 atomic regions from SNP 124535 to 125135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,451 DEBUG Processing 515/868 atomic regions from SNP 154420 to 155020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,456 DEBUG Processing 494/913 atomic regions from SNP 148092 to 148692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,466 DEBUG Processing 433/478 atomic regions from SNP 129850 to 130450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:38,630 DEBUG Processing 291/657 atomic regions from SNP 87142 to 87742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,641 DEBUG Processing 381/1143 atomic regions from SNP 114279 to 114879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,700 DEBUG Processing 417/1035 atomic regions from SNP 124835 to 125435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,719 DEBUG Processing 434/478 atomic regions from SNP 130150 to 130750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:38,719 DEBUG Processing 516/868 atomic regions from SNP 154720 to 155320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,746 DEBUG Processing 495/913 atomic regions from SNP 148392 to 148992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,868 DEBUG Processing 292/657 atomic regions from SNP 87442 to 88042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,920 DEBUG Processing 382/1143 atomic regions from SNP 114579 to 115179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,973 DEBUG Processing 435/478 atomic regions from SNP 130450 to 131050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:38,986 DEBUG Processing 517/868 atomic regions from SNP 155020 to 155620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,990 DEBUG Processing 418/1035 atomic regions from SNP 125135 to 125735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,030 DEBUG Processing 496/913 atomic regions from SNP 148692 to 149292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,107 DEBUG Processing 293/657 atomic regions from SNP 87742 to 88342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,198 DEBUG Processing 383/1143 atomic regions from SNP 114879 to 115479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,219 DEBUG Processing 436/478 atomic regions from SNP 130750 to 131350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:39,248 DEBUG Processing 518/868 atomic regions from SNP 155320 to 155920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,279 DEBUG Processing 419/1035 atomic regions from SNP 125435 to 126035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,323 DEBUG Processing 497/913 atomic regions from SNP 148992 to 149592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,356 DEBUG Processing 294/657 atomic regions from SNP 88042 to 88642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,457 DEBUG Processing 437/478 atomic regions from SNP 131050 to 131650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:39,477 DEBUG Processing 384/1143 atomic regions from SNP 115179 to 115779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,500 DEBUG Processing 519/868 atomic regions from SNP 155620 to 156220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,569 DEBUG Processing 420/1035 atomic regions from SNP 125735 to 126335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,611 DEBUG Processing 295/657 atomic regions from SNP 88342 to 88942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,626 DEBUG Processing 498/913 atomic regions from SNP 149292 to 149892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,706 DEBUG Processing 438/478 atomic regions from SNP 131350 to 131950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:39,755 DEBUG Processing 520/868 atomic regions from SNP 155920 to 156520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,770 DEBUG Processing 385/1143 atomic regions from SNP 115479 to 116079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,869 DEBUG Processing 421/1035 atomic regions from SNP 126035 to 126635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,881 DEBUG Processing 296/657 atomic regions from SNP 88642 to 89242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,939 DEBUG Processing 499/913 atomic regions from SNP 149592 to 150192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,961 DEBUG Processing 439/478 atomic regions from SNP 131650 to 132250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:40,011 DEBUG Processing 521/868 atomic regions from SNP 156220 to 156820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,057 DEBUG Processing 386/1143 atomic regions from SNP 115779 to 116379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,129 DEBUG Processing 297/657 atomic regions from SNP 88942 to 89542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,156 DEBUG Processing 422/1035 atomic regions from SNP 126335 to 126935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,213 DEBUG Processing 440/478 atomic regions from SNP 131950 to 132550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:40,236 DEBUG Processing 500/913 atomic regions from SNP 149892 to 150492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,262 DEBUG Processing 522/868 atomic regions from SNP 156520 to 157120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,340 DEBUG Processing 387/1143 atomic regions from SNP 116079 to 116679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,373 DEBUG Processing 298/657 atomic regions from SNP 89242 to 89842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,441 DEBUG Processing 423/1035 atomic regions from SNP 126635 to 127235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,466 DEBUG Processing 441/478 atomic regions from SNP 132250 to 132850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:40,529 DEBUG Processing 523/868 atomic regions from SNP 156820 to 157420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,538 DEBUG Processing 501/913 atomic regions from SNP 150192 to 150792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,625 DEBUG Processing 299/657 atomic regions from SNP 89542 to 90142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,635 DEBUG Processing 388/1143 atomic regions from SNP 116379 to 116979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,711 DEBUG Processing 442/478 atomic regions from SNP 132550 to 133150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:40,726 DEBUG Processing 424/1035 atomic regions from SNP 126935 to 127535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,784 DEBUG Processing 524/868 atomic regions from SNP 157120 to 157720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,828 DEBUG Processing 502/913 atomic regions from SNP 150492 to 151092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,874 DEBUG Processing 300/657 atomic regions from SNP 89842 to 90442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,929 DEBUG Processing 389/1143 atomic regions from SNP 116679 to 117279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,960 DEBUG Processing 443/478 atomic regions from SNP 132850 to 133450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:41,025 DEBUG Processing 425/1035 atomic regions from SNP 127235 to 127835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,043 DEBUG Processing 525/868 atomic regions from SNP 157420 to 158020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,113 DEBUG Processing 503/913 atomic regions from SNP 150792 to 151392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,123 DEBUG Processing 301/657 atomic regions from SNP 90142 to 90742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,205 DEBUG Processing 444/478 atomic regions from SNP 133150 to 133750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:41,213 DEBUG Processing 390/1143 atomic regions from SNP 116979 to 117579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,297 DEBUG Processing 526/868 atomic regions from SNP 157720 to 158320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,320 DEBUG Processing 426/1035 atomic regions from SNP 127535 to 128135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,375 DEBUG Processing 302/657 atomic regions from SNP 90442 to 91042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,403 DEBUG Processing 504/913 atomic regions from SNP 151092 to 151692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,449 DEBUG Processing 445/478 atomic regions from SNP 133450 to 134050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:41,498 DEBUG Processing 391/1143 atomic regions from SNP 117279 to 117879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,549 DEBUG Processing 527/868 atomic regions from SNP 158020 to 158620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,604 DEBUG Processing 427/1035 atomic regions from SNP 127835 to 128435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,628 DEBUG Processing 303/657 atomic regions from SNP 90742 to 91342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,692 DEBUG Processing 446/478 atomic regions from SNP 133750 to 134350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:41,694 DEBUG Processing 505/913 atomic regions from SNP 151392 to 151992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,782 DEBUG Processing 392/1143 atomic regions from SNP 117579 to 118179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,799 DEBUG Processing 528/868 atomic regions from SNP 158320 to 158920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,879 DEBUG Processing 304/657 atomic regions from SNP 91042 to 91642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,887 DEBUG Processing 428/1035 atomic regions from SNP 128135 to 128735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,933 DEBUG Processing 447/478 atomic regions from SNP 134050 to 134650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:41,980 DEBUG Processing 506/913 atomic regions from SNP 151692 to 152292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,050 DEBUG Processing 529/868 atomic regions from SNP 158620 to 159220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,065 DEBUG Processing 393/1143 atomic regions from SNP 117879 to 118479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,139 DEBUG Processing 305/657 atomic regions from SNP 91342 to 91942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,174 DEBUG Processing 429/1035 atomic regions from SNP 128435 to 129035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,183 DEBUG Processing 448/478 atomic regions from SNP 134350 to 134950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:42,255 DEBUG Processing 507/913 atomic regions from SNP 151992 to 152592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,302 DEBUG Processing 530/868 atomic regions from SNP 158920 to 159520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,350 DEBUG Processing 394/1143 atomic regions from SNP 118179 to 118779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,391 DEBUG Processing 306/657 atomic regions from SNP 91642 to 92242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,431 DEBUG Processing 449/478 atomic regions from SNP 134650 to 135250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:42,456 DEBUG Processing 430/1035 atomic regions from SNP 128735 to 129335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,513 DEBUG Processing 508/913 atomic regions from SNP 152292 to 152892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,565 DEBUG Processing 531/868 atomic regions from SNP 159220 to 159820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,650 DEBUG Processing 395/1143 atomic regions from SNP 118479 to 119079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,653 DEBUG Processing 307/657 atomic regions from SNP 91942 to 92542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,693 DEBUG Processing 450/478 atomic regions from SNP 134950 to 135550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:42,754 DEBUG Processing 431/1035 atomic regions from SNP 129035 to 129635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,777 DEBUG Processing 509/913 atomic regions from SNP 152592 to 153192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,833 DEBUG Processing 532/868 atomic regions from SNP 159520 to 160120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,911 DEBUG Processing 308/657 atomic regions from SNP 92242 to 92842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,950 DEBUG Processing 396/1143 atomic regions from SNP 118779 to 119379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,951 DEBUG Processing 451/478 atomic regions from SNP 135250 to 135850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:43,033 DEBUG Processing 510/913 atomic regions from SNP 152892 to 153492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,038 DEBUG Processing 432/1035 atomic regions from SNP 129335 to 129935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,084 DEBUG Processing 533/868 atomic regions from SNP 159820 to 160420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,155 DEBUG Processing 309/657 atomic regions from SNP 92542 to 93142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,200 DEBUG Processing 452/478 atomic regions from SNP 135550 to 136150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:43,240 DEBUG Processing 397/1143 atomic regions from SNP 119079 to 119679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,294 DEBUG Processing 511/913 atomic regions from SNP 153192 to 153792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,325 DEBUG Processing 433/1035 atomic regions from SNP 129635 to 130235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,337 DEBUG Processing 534/868 atomic regions from SNP 160120 to 160720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,398 DEBUG Processing 310/657 atomic regions from SNP 92842 to 93442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,439 DEBUG Processing 453/478 atomic regions from SNP 135850 to 136450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:43,531 DEBUG Processing 398/1143 atomic regions from SNP 119379 to 119979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,559 DEBUG Processing 512/913 atomic regions from SNP 153492 to 154092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,596 DEBUG Processing 535/868 atomic regions from SNP 160420 to 161020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,611 DEBUG Processing 434/1035 atomic regions from SNP 129935 to 130535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,640 DEBUG Processing 311/657 atomic regions from SNP 93142 to 93742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,673 DEBUG Processing 454/478 atomic regions from SNP 136150 to 136750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:43,820 DEBUG Processing 513/913 atomic regions from SNP 153792 to 154392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,823 DEBUG Processing 399/1143 atomic regions from SNP 119679 to 120279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,855 DEBUG Processing 536/868 atomic regions from SNP 160720 to 161320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,891 DEBUG Processing 312/657 atomic regions from SNP 93442 to 94042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,895 DEBUG Processing 435/1035 atomic regions from SNP 130235 to 130835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,913 DEBUG Processing 455/478 atomic regions from SNP 136450 to 137050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:44,080 DEBUG Processing 514/913 atomic regions from SNP 154092 to 154692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,117 DEBUG Processing 400/1143 atomic regions from SNP 119979 to 120579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,117 DEBUG Processing 537/868 atomic regions from SNP 161020 to 161620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,154 DEBUG Processing 313/657 atomic regions from SNP 93742 to 94342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,165 DEBUG Processing 456/478 atomic regions from SNP 136750 to 137350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:44,182 DEBUG Processing 436/1035 atomic regions from SNP 130535 to 131135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,332 DEBUG Processing 515/913 atomic regions from SNP 154392 to 154992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,381 DEBUG Processing 538/868 atomic regions from SNP 161320 to 161920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,413 DEBUG Processing 314/657 atomic regions from SNP 94042 to 94642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,415 DEBUG Processing 401/1143 atomic regions from SNP 120279 to 120879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,417 DEBUG Processing 457/478 atomic regions from SNP 137050 to 137650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:44,468 DEBUG Processing 437/1035 atomic regions from SNP 130835 to 131435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,583 DEBUG Processing 516/913 atomic regions from SNP 154692 to 155292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,638 DEBUG Processing 539/868 atomic regions from SNP 161620 to 162220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,673 DEBUG Processing 315/657 atomic regions from SNP 94342 to 94942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,673 DEBUG Processing 458/478 atomic regions from SNP 137350 to 137950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:44,717 DEBUG Processing 402/1143 atomic regions from SNP 120579 to 121179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,752 DEBUG Processing 438/1035 atomic regions from SNP 131135 to 131735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,839 DEBUG Processing 517/913 atomic regions from SNP 154992 to 155592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,892 DEBUG Processing 540/868 atomic regions from SNP 161920 to 162520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,925 DEBUG Processing 459/478 atomic regions from SNP 137650 to 138250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:44,929 DEBUG Processing 316/657 atomic regions from SNP 94642 to 95242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,010 DEBUG Processing 403/1143 atomic regions from SNP 120879 to 121479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,061 DEBUG Processing 439/1035 atomic regions from SNP 131435 to 132035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,096 DEBUG Processing 518/913 atomic regions from SNP 155292 to 155892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,144 DEBUG Processing 541/868 atomic regions from SNP 162220 to 162820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,169 DEBUG Processing 460/478 atomic regions from SNP 137950 to 138550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:45,176 DEBUG Processing 317/657 atomic regions from SNP 94942 to 95542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,296 DEBUG Processing 404/1143 atomic regions from SNP 121179 to 121779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,353 DEBUG Processing 440/1035 atomic regions from SNP 131735 to 132335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,358 DEBUG Processing 519/913 atomic regions from SNP 155592 to 156192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,403 DEBUG Processing 542/868 atomic regions from SNP 162520 to 163120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,416 DEBUG Processing 461/478 atomic regions from SNP 138250 to 138850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:45,425 DEBUG Processing 318/657 atomic regions from SNP 95242 to 95842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,579 DEBUG Processing 405/1143 atomic regions from SNP 121479 to 122079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,629 DEBUG Processing 520/913 atomic regions from SNP 155892 to 156492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,644 DEBUG Processing 441/1035 atomic regions from SNP 132035 to 132635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,665 DEBUG Processing 543/868 atomic regions from SNP 162820 to 163420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,670 DEBUG Processing 462/478 atomic regions from SNP 138550 to 139150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:45,679 DEBUG Processing 319/657 atomic regions from SNP 95542 to 96142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,865 DEBUG Processing 406/1143 atomic regions from SNP 121779 to 122379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,892 DEBUG Processing 521/913 atomic regions from SNP 156192 to 156792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,923 DEBUG Processing 463/478 atomic regions from SNP 138850 to 139450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:45,927 DEBUG Processing 544/868 atomic regions from SNP 163120 to 163720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,933 DEBUG Processing 442/1035 atomic regions from SNP 132335 to 132935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,939 DEBUG Processing 320/657 atomic regions from SNP 95842 to 96442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,150 DEBUG Processing 522/913 atomic regions from SNP 156492 to 157092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,150 DEBUG Processing 407/1143 atomic regions from SNP 122079 to 122679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,179 DEBUG Processing 464/478 atomic regions from SNP 139150 to 139750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:46,188 DEBUG Processing 545/868 atomic regions from SNP 163420 to 164020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,201 DEBUG Processing 321/657 atomic regions from SNP 96142 to 96742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,224 DEBUG Processing 443/1035 atomic regions from SNP 132635 to 133235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,409 DEBUG Processing 523/913 atomic regions from SNP 156792 to 157392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,432 DEBUG Processing 465/478 atomic regions from SNP 139450 to 140050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:46,450 DEBUG Processing 408/1143 atomic regions from SNP 122379 to 122979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,452 DEBUG Processing 546/868 atomic regions from SNP 163720 to 164320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,462 DEBUG Processing 322/657 atomic regions from SNP 96442 to 97042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,514 DEBUG Processing 444/1035 atomic regions from SNP 132935 to 133535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,664 DEBUG Processing 524/913 atomic regions from SNP 157092 to 157692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,687 DEBUG Processing 466/478 atomic regions from SNP 139750 to 140350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:46,715 DEBUG Processing 547/868 atomic regions from SNP 164020 to 164620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,724 DEBUG Processing 323/657 atomic regions from SNP 96742 to 97342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,778 DEBUG Processing 409/1143 atomic regions from SNP 122679 to 123279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,799 DEBUG Processing 445/1035 atomic regions from SNP 133235 to 133835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,931 DEBUG Processing 467/478 atomic regions from SNP 140050 to 140650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:46,932 DEBUG Processing 525/913 atomic regions from SNP 157392 to 157992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,973 DEBUG Processing 548/868 atomic regions from SNP 164320 to 164920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,979 DEBUG Processing 324/657 atomic regions from SNP 97042 to 97642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,081 DEBUG Processing 446/1035 atomic regions from SNP 133535 to 134135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,093 DEBUG Processing 410/1143 atomic regions from SNP 122979 to 123579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,177 DEBUG Processing 468/478 atomic regions from SNP 140350 to 140950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:47,214 DEBUG Processing 526/913 atomic regions from SNP 157692 to 158292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,227 DEBUG Processing 549/868 atomic regions from SNP 164620 to 165220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,228 DEBUG Processing 325/657 atomic regions from SNP 97342 to 97942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,361 DEBUG Processing 447/1035 atomic regions from SNP 133835 to 134435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,403 DEBUG Processing 411/1143 atomic regions from SNP 123279 to 123879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,428 DEBUG Processing 469/478 atomic regions from SNP 140650 to 141250 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:47,475 DEBUG Processing 550/868 atomic regions from SNP 164920 to 165520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,476 DEBUG Processing 326/657 atomic regions from SNP 97642 to 98242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,496 DEBUG Processing 527/913 atomic regions from SNP 157992 to 158592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,639 DEBUG Processing 448/1035 atomic regions from SNP 134135 to 134735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,687 DEBUG Processing 470/478 atomic regions from SNP 140950 to 141550 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:47,722 DEBUG Processing 412/1143 atomic regions from SNP 123579 to 124179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,735 DEBUG Processing 327/657 atomic regions from SNP 97942 to 98542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,736 DEBUG Processing 551/868 atomic regions from SNP 165220 to 165820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,783 DEBUG Processing 528/913 atomic regions from SNP 158292 to 158892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,923 DEBUG Processing 449/1035 atomic regions from SNP 134435 to 135035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,952 DEBUG Processing 471/478 atomic regions from SNP 141250 to 141850 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:48,010 DEBUG Processing 328/657 atomic regions from SNP 98242 to 98842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,011 DEBUG Processing 552/868 atomic regions from SNP 165520 to 166120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,042 DEBUG Processing 413/1143 atomic regions from SNP 123879 to 124479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,097 DEBUG Processing 529/913 atomic regions from SNP 158592 to 159192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,217 DEBUG Processing 450/1035 atomic regions from SNP 134735 to 135335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,218 DEBUG Processing 472/478 atomic regions from SNP 141550 to 142150 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:48,277 DEBUG Processing 329/657 atomic regions from SNP 98542 to 99142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,285 DEBUG Processing 553/868 atomic regions from SNP 165820 to 166420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,339 DEBUG Processing 414/1143 atomic regions from SNP 124179 to 124779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,380 DEBUG Processing 530/913 atomic regions from SNP 158892 to 159492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,470 DEBUG Processing 473/478 atomic regions from SNP 141850 to 142450 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:48,503 DEBUG Processing 451/1035 atomic regions from SNP 135035 to 135635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,544 DEBUG Processing 330/657 atomic regions from SNP 98842 to 99442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,564 DEBUG Processing 554/868 atomic regions from SNP 166120 to 166720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,631 DEBUG Processing 415/1143 atomic regions from SNP 124479 to 125079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,666 DEBUG Processing 531/913 atomic regions from SNP 159192 to 159792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,712 DEBUG Processing 474/478 atomic regions from SNP 142150 to 142750 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:48,789 DEBUG Processing 452/1035 atomic regions from SNP 135335 to 135935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,804 DEBUG Processing 331/657 atomic regions from SNP 99142 to 99742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,844 DEBUG Processing 555/868 atomic regions from SNP 166420 to 167020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,919 DEBUG Processing 416/1143 atomic regions from SNP 124779 to 125379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,938 DEBUG Processing 532/913 atomic regions from SNP 159492 to 160092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,945 DEBUG Processing 475/478 atomic regions from SNP 142450 to 143050 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:49,060 DEBUG Processing 332/657 atomic regions from SNP 99442 to 100042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,074 DEBUG Processing 453/1035 atomic regions from SNP 135635 to 136235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,108 DEBUG Processing 556/868 atomic regions from SNP 166720 to 167320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,187 DEBUG Processing 476/478 atomic regions from SNP 142750 to 143350 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:49,209 DEBUG Processing 417/1143 atomic regions from SNP 125079 to 125679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,225 DEBUG Processing 533/913 atomic regions from SNP 159792 to 160392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,311 DEBUG Processing 333/657 atomic regions from SNP 99742 to 100342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,355 DEBUG Processing 454/1035 atomic regions from SNP 135935 to 136535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,361 DEBUG Processing 557/868 atomic regions from SNP 167020 to 167620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,429 DEBUG Processing 477/478 atomic regions from SNP 143050 to 143650 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:49,493 DEBUG Processing 418/1143 atomic regions from SNP 125379 to 125979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,516 DEBUG Processing 534/913 atomic regions from SNP 160092 to 160692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,560 DEBUG Processing 334/657 atomic regions from SNP 100042 to 100642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,617 DEBUG Processing 558/868 atomic regions from SNP 167320 to 167920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,640 DEBUG Processing 455/1035 atomic regions from SNP 136235 to 136835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,674 DEBUG Processing 478/478 atomic regions from SNP 143350 to 143950 for chrX (subchromosome 4 of 5). 2025-01-31 09:46:49,791 DEBUG Processing 419/1143 atomic regions from SNP 125679 to 126279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,808 DEBUG Unique SNPs positions in subchromosome 4: 143951 2025-01-31 09:46:49,811 DEBUG Processing 535/913 atomic regions from SNP 160392 to 160992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,820 DEBUG Processing 335/657 atomic regions from SNP 100342 to 100942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,872 DEBUG Processing 559/868 atomic regions from SNP 167620 to 168220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,919 DEBUG Processing 456/1035 atomic regions from SNP 136535 to 137135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,083 DEBUG Processing 336/657 atomic regions from SNP 100642 to 101242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,093 DEBUG Processing 536/913 atomic regions from SNP 160692 to 161292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,106 DEBUG Processing 420/1143 atomic regions from SNP 125979 to 126579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,125 DEBUG Processing 560/868 atomic regions from SNP 167920 to 168520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,200 DEBUG Processing 457/1035 atomic regions from SNP 136835 to 137435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,339 DEBUG Processing 337/657 atomic regions from SNP 100942 to 101542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,380 DEBUG Processing 561/868 atomic regions from SNP 168220 to 168820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,385 DEBUG Processing 537/913 atomic regions from SNP 160992 to 161592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,428 DEBUG Processing 421/1143 atomic regions from SNP 126279 to 126879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,479 DEBUG Processing 458/1035 atomic regions from SNP 137135 to 137735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,560 DEBUG Subchromosome time: 137.57051749399398, subchromosome SNPs: 143951 2025-01-31 09:46:50,579 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:50,592 DEBUG Processing 338/657 atomic regions from SNP 101242 to 101842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,642 DEBUG Processing 562/868 atomic regions from SNP 168520 to 169120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,692 DEBUG Processing 538/913 atomic regions from SNP 161292 to 161892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,767 DEBUG Processing 459/1035 atomic regions from SNP 137435 to 138035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,770 DEBUG Processing 422/1143 atomic regions from SNP 126579 to 127179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,833 DEBUG Processing 339/657 atomic regions from SNP 101542 to 102142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,889 DEBUG Processing 563/868 atomic regions from SNP 168820 to 169420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,983 DEBUG Processing 539/913 atomic regions from SNP 161592 to 162192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,046 DEBUG Processing 460/1035 atomic regions from SNP 137735 to 138335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,079 DEBUG Processing 340/657 atomic regions from SNP 101842 to 102442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,086 DEBUG Processing 423/1143 atomic regions from SNP 126879 to 127479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,136 DEBUG Processing 564/868 atomic regions from SNP 169120 to 169720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,265 DEBUG Processing 540/913 atomic regions from SNP 161892 to 162492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,323 DEBUG Processing 461/1035 atomic regions from SNP 138035 to 138635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,326 DEBUG Processing 341/657 atomic regions from SNP 102142 to 102742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,385 DEBUG Processing 565/868 atomic regions from SNP 169420 to 170020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,402 DEBUG Processing 424/1143 atomic regions from SNP 127179 to 127779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,538 DEBUG Processing 541/913 atomic regions from SNP 162192 to 162792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,570 DEBUG Processing 342/657 atomic regions from SNP 102442 to 103042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,596 DEBUG Processing 462/1035 atomic regions from SNP 138335 to 138935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,639 DEBUG Processing 566/868 atomic regions from SNP 169720 to 170320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,719 DEBUG Processing 425/1143 atomic regions from SNP 127479 to 128079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,814 DEBUG Processing 343/657 atomic regions from SNP 102742 to 103342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,818 DEBUG Processing 542/913 atomic regions from SNP 162492 to 163092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,874 DEBUG Processing 463/1035 atomic regions from SNP 138635 to 139235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,888 DEBUG Processing 567/868 atomic regions from SNP 170020 to 170620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,037 DEBUG Processing 426/1143 atomic regions from SNP 127779 to 128379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,062 DEBUG Processing 344/657 atomic regions from SNP 103042 to 103642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,095 DEBUG Processing 543/913 atomic regions from SNP 162792 to 163392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,143 DEBUG Processing 568/868 atomic regions from SNP 170320 to 170920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,162 DEBUG Processing 464/1035 atomic regions from SNP 138935 to 139535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,317 DEBUG Processing 345/657 atomic regions from SNP 103342 to 103942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,358 DEBUG Processing 544/913 atomic regions from SNP 163092 to 163692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,373 DEBUG Processing 427/1143 atomic regions from SNP 128079 to 128679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,396 DEBUG Processing 569/868 atomic regions from SNP 170620 to 171220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,443 DEBUG Processing 465/1035 atomic regions from SNP 139235 to 139835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,562 DEBUG Processing 346/657 atomic regions from SNP 103642 to 104242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,636 DEBUG Processing 545/913 atomic regions from SNP 163392 to 163992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,649 DEBUG Processing 570/868 atomic regions from SNP 170920 to 171520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,706 DEBUG Processing 428/1143 atomic regions from SNP 128379 to 128979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,728 DEBUG Processing 466/1035 atomic regions from SNP 139535 to 140135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,810 DEBUG Processing 347/657 atomic regions from SNP 103942 to 104542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,897 DEBUG Processing 571/868 atomic regions from SNP 171220 to 171820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,915 DEBUG Processing 546/913 atomic regions from SNP 163692 to 164292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,017 DEBUG Processing 467/1035 atomic regions from SNP 139835 to 140435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,042 DEBUG Processing 429/1143 atomic regions from SNP 128679 to 129279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,066 DEBUG Processing 348/657 atomic regions from SNP 104242 to 104842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,143 DEBUG Processing 572/868 atomic regions from SNP 171520 to 172120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,190 DEBUG Processing 547/913 atomic regions from SNP 163992 to 164592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,306 DEBUG Processing 468/1035 atomic regions from SNP 140135 to 140735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,325 DEBUG Processing 349/657 atomic regions from SNP 104542 to 105142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,360 DEBUG Processing 430/1143 atomic regions from SNP 128979 to 129579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,413 DEBUG Processing 573/868 atomic regions from SNP 171820 to 172420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,459 DEBUG Processing 548/913 atomic regions from SNP 164292 to 164892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,583 DEBUG Processing 350/657 atomic regions from SNP 104842 to 105442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,595 DEBUG Processing 469/1035 atomic regions from SNP 140435 to 141035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,654 DEBUG Processing 431/1143 atomic regions from SNP 129279 to 129879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,693 DEBUG Processing 574/868 atomic regions from SNP 172120 to 172720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,724 DEBUG Processing 549/913 atomic regions from SNP 164592 to 165192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,837 DEBUG Processing 351/657 atomic regions from SNP 105142 to 105742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,877 DEBUG Processing 470/1035 atomic regions from SNP 140735 to 141335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,945 DEBUG Processing 432/1143 atomic regions from SNP 129579 to 130179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,964 DEBUG Processing 575/868 atomic regions from SNP 172420 to 173020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,983 DEBUG Processing 550/913 atomic regions from SNP 164892 to 165492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,081 DEBUG Processing 352/657 atomic regions from SNP 105442 to 106042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,150 DEBUG Processing 471/1035 atomic regions from SNP 141035 to 141635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,229 DEBUG Processing 433/1143 atomic regions from SNP 129879 to 130479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,235 DEBUG Processing 576/868 atomic regions from SNP 172720 to 173320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,239 DEBUG Processing 551/913 atomic regions from SNP 165192 to 165792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,327 DEBUG Processing 353/657 atomic regions from SNP 105742 to 106342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,419 DEBUG Processing 472/1035 atomic regions from SNP 141335 to 141935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,488 DEBUG Processing 577/868 atomic regions from SNP 173020 to 173620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,498 DEBUG Processing 552/913 atomic regions from SNP 165492 to 166092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,519 DEBUG Processing 434/1143 atomic regions from SNP 130179 to 130779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,576 DEBUG Processing 354/657 atomic regions from SNP 106042 to 106642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,690 DEBUG Processing 473/1035 atomic regions from SNP 141635 to 142235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,736 DEBUG Processing 578/868 atomic regions from SNP 173320 to 173920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,760 DEBUG Processing 553/913 atomic regions from SNP 165792 to 166392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,808 DEBUG Processing 435/1143 atomic regions from SNP 130479 to 131079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,826 DEBUG Processing 355/657 atomic regions from SNP 106342 to 106942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,959 DEBUG Processing 474/1035 atomic regions from SNP 141935 to 142535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,980 DEBUG Processing 579/868 atomic regions from SNP 173620 to 174220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,019 DEBUG Processing 554/913 atomic regions from SNP 166092 to 166692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,075 DEBUG Processing 356/657 atomic regions from SNP 106642 to 107242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,096 DEBUG Processing 436/1143 atomic regions from SNP 130779 to 131379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,226 DEBUG Processing 580/868 atomic regions from SNP 173920 to 174520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,233 DEBUG Processing 475/1035 atomic regions from SNP 142235 to 142835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,271 DEBUG Processing 555/913 atomic regions from SNP 166392 to 166992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,321 DEBUG Processing 357/657 atomic regions from SNP 106942 to 107542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,381 DEBUG Processing 437/1143 atomic regions from SNP 131079 to 131679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,475 DEBUG Processing 581/868 atomic regions from SNP 174220 to 174820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,507 DEBUG Processing 476/1035 atomic regions from SNP 142535 to 143135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,520 DEBUG Processing 556/913 atomic regions from SNP 166692 to 167292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,564 DEBUG Processing 358/657 atomic regions from SNP 107242 to 107842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,663 DEBUG Processing 438/1143 atomic regions from SNP 131379 to 131979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,728 DEBUG Processing 582/868 atomic regions from SNP 174520 to 175120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,774 DEBUG Processing 557/913 atomic regions from SNP 166992 to 167592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,786 DEBUG Processing 477/1035 atomic regions from SNP 142835 to 143435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,807 DEBUG Processing 359/657 atomic regions from SNP 107542 to 108142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,941 DEBUG Processing 439/1143 atomic regions from SNP 131679 to 132279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,984 DEBUG Processing 583/868 atomic regions from SNP 174820 to 175420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,032 DEBUG Processing 558/913 atomic regions from SNP 167292 to 167892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,054 DEBUG Processing 360/657 atomic regions from SNP 107842 to 108442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,069 DEBUG Processing 478/1035 atomic regions from SNP 143135 to 143735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,223 DEBUG Processing 440/1143 atomic regions from SNP 131979 to 132579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,250 DEBUG Processing 584/868 atomic regions from SNP 175120 to 175720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,301 DEBUG Processing 559/913 atomic regions from SNP 167592 to 168192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,307 DEBUG Processing 361/657 atomic regions from SNP 108142 to 108742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,347 DEBUG Processing 479/1035 atomic regions from SNP 143435 to 144035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,509 DEBUG Processing 441/1143 atomic regions from SNP 132279 to 132879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,522 DEBUG Processing 585/868 atomic regions from SNP 175420 to 176020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,562 DEBUG Processing 362/657 atomic regions from SNP 108442 to 109042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,576 DEBUG Processing 560/913 atomic regions from SNP 167892 to 168492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,630 DEBUG Processing 480/1035 atomic regions from SNP 143735 to 144335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,789 DEBUG Processing 586/868 atomic regions from SNP 175720 to 176320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,806 DEBUG Processing 442/1143 atomic regions from SNP 132579 to 133179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,823 DEBUG Processing 363/657 atomic regions from SNP 108742 to 109342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,869 DEBUG Processing 561/913 atomic regions from SNP 168192 to 168792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,897 DEBUG Processing 481/1035 atomic regions from SNP 144035 to 144635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,043 DEBUG Processing 587/868 atomic regions from SNP 176020 to 176620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,079 DEBUG Processing 364/657 atomic regions from SNP 109042 to 109642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,098 DEBUG Processing 443/1143 atomic regions from SNP 132879 to 133479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,142 DEBUG Processing 562/913 atomic regions from SNP 168492 to 169092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,162 DEBUG Processing 482/1035 atomic regions from SNP 144335 to 144935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,300 DEBUG Processing 588/868 atomic regions from SNP 176320 to 176920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,342 DEBUG Processing 365/657 atomic regions from SNP 109342 to 109942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,399 DEBUG Processing 444/1143 atomic regions from SNP 133179 to 133779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,421 DEBUG Processing 563/913 atomic regions from SNP 168792 to 169392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,434 DEBUG Processing 483/1035 atomic regions from SNP 144635 to 145235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,551 DEBUG Processing 589/868 atomic regions from SNP 176620 to 177220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,591 DEBUG Processing 366/657 atomic regions from SNP 109642 to 110242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,687 DEBUG Processing 445/1143 atomic regions from SNP 133479 to 134079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,698 DEBUG Processing 564/913 atomic regions from SNP 169092 to 169692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,702 DEBUG Processing 484/1035 atomic regions from SNP 144935 to 145535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,791 DEBUG Processing 590/868 atomic regions from SNP 176920 to 177520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,849 DEBUG Processing 367/657 atomic regions from SNP 109942 to 110542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,970 DEBUG Processing 565/913 atomic regions from SNP 169392 to 169992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,971 DEBUG Processing 485/1035 atomic regions from SNP 145235 to 145835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,979 DEBUG Processing 446/1143 atomic regions from SNP 133779 to 134379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,038 DEBUG Processing 591/868 atomic regions from SNP 177220 to 177820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,114 DEBUG Processing 368/657 atomic regions from SNP 110242 to 110842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,237 DEBUG Processing 486/1035 atomic regions from SNP 145535 to 146135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,241 DEBUG Processing 566/913 atomic regions from SNP 169692 to 170292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,271 DEBUG Processing 447/1143 atomic regions from SNP 134079 to 134679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,283 DEBUG Processing 592/868 atomic regions from SNP 177520 to 178120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,378 DEBUG Processing 369/657 atomic regions from SNP 110542 to 111142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,507 DEBUG Processing 487/1035 atomic regions from SNP 145835 to 146435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,526 DEBUG Processing 567/913 atomic regions from SNP 169992 to 170592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,531 DEBUG Processing 593/868 atomic regions from SNP 177820 to 178420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,555 DEBUG Processing 448/1143 atomic regions from SNP 134379 to 134979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,648 DEBUG Processing 370/657 atomic regions from SNP 110842 to 111442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,776 DEBUG Processing 488/1035 atomic regions from SNP 146135 to 146735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,787 DEBUG Processing 594/868 atomic regions from SNP 178120 to 178720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,812 DEBUG Processing 568/913 atomic regions from SNP 170292 to 170892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,838 DEBUG Processing 449/1143 atomic regions from SNP 134679 to 135279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,915 DEBUG Processing 371/657 atomic regions from SNP 111142 to 111742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,041 DEBUG Processing 595/868 atomic regions from SNP 178420 to 179020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,045 DEBUG Processing 489/1035 atomic regions from SNP 146435 to 147035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,093 DEBUG Processing 569/913 atomic regions from SNP 170592 to 171192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,125 DEBUG Processing 450/1143 atomic regions from SNP 134979 to 135579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,181 DEBUG Processing 372/657 atomic regions from SNP 111442 to 112042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,289 DEBUG Processing 596/868 atomic regions from SNP 178720 to 179320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,317 DEBUG Processing 490/1035 atomic regions from SNP 146735 to 147335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,375 DEBUG Processing 570/913 atomic regions from SNP 170892 to 171492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,396 DEBUG Segmenting atomic regions: 2025-01-31 09:46:59,416 DEBUG Processing 451/1143 atomic regions from SNP 135279 to 135879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,443 DEBUG Processing 373/657 atomic regions from SNP 111742 to 112342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,511 DEBUG Processing 1/236 atomic regions from SNP 0 to 601 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:59,537 DEBUG Processing 597/868 atomic regions from SNP 179020 to 179620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,592 DEBUG Processing 491/1035 atomic regions from SNP 147035 to 147635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,661 DEBUG Processing 571/913 atomic regions from SNP 171192 to 171792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,713 DEBUG Processing 452/1143 atomic regions from SNP 135579 to 136179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,722 DEBUG Processing 374/657 atomic regions from SNP 112042 to 112642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,749 DEBUG Processing 2/236 atomic regions from SNP 301 to 902 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:59,787 DEBUG Processing 598/868 atomic regions from SNP 179320 to 179920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,884 DEBUG Processing 492/1035 atomic regions from SNP 147335 to 147935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,949 DEBUG Processing 572/913 atomic regions from SNP 171492 to 172092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,986 DEBUG Processing 3/236 atomic regions from SNP 602 to 1203 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:59,995 DEBUG Processing 375/657 atomic regions from SNP 112342 to 112942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,001 DEBUG Processing 453/1143 atomic regions from SNP 135879 to 136479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,044 DEBUG Processing 599/868 atomic regions from SNP 179620 to 180220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,185 DEBUG Processing 493/1035 atomic regions from SNP 147635 to 148235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,229 DEBUG Processing 4/236 atomic regions from SNP 903 to 1504 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:00,231 DEBUG Processing 573/913 atomic regions from SNP 171792 to 172392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,275 DEBUG Processing 376/657 atomic regions from SNP 112642 to 113242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,294 DEBUG Processing 454/1143 atomic regions from SNP 136179 to 136779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,298 DEBUG Processing 600/868 atomic regions from SNP 179920 to 180520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,470 DEBUG Processing 5/236 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:00,487 DEBUG Processing 494/1035 atomic regions from SNP 147935 to 148535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,498 DEBUG Processing 574/913 atomic regions from SNP 172092 to 172692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,549 DEBUG Processing 377/657 atomic regions from SNP 112942 to 113542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,555 DEBUG Processing 601/868 atomic regions from SNP 180220 to 180820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,589 DEBUG Processing 455/1143 atomic regions from SNP 136479 to 137079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,706 DEBUG Processing 6/236 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:00,777 DEBUG Processing 575/913 atomic regions from SNP 172392 to 172992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,778 DEBUG Processing 495/1035 atomic regions from SNP 148235 to 148835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,815 DEBUG Processing 378/657 atomic regions from SNP 113242 to 113842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,832 DEBUG Processing 602/868 atomic regions from SNP 180520 to 181120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,891 DEBUG Processing 456/1143 atomic regions from SNP 136779 to 137379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,944 DEBUG Processing 7/236 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:01,035 DEBUG Processing 576/913 atomic regions from SNP 172692 to 173292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,051 DEBUG Processing 496/1035 atomic regions from SNP 148535 to 149135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,068 DEBUG Processing 379/657 atomic regions from SNP 113542 to 114142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,100 DEBUG Processing 603/868 atomic regions from SNP 180820 to 181420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,183 DEBUG Processing 457/1143 atomic regions from SNP 137079 to 137679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,185 DEBUG Processing 8/236 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:01,305 DEBUG Processing 577/913 atomic regions from SNP 172992 to 173592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,308 DEBUG Processing 380/657 atomic regions from SNP 113842 to 114442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,321 DEBUG Processing 497/1035 atomic regions from SNP 148835 to 149435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,362 DEBUG Processing 604/868 atomic regions from SNP 181120 to 181720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,419 DEBUG Processing 9/236 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:01,465 DEBUG Processing 458/1143 atomic regions from SNP 137379 to 137979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,548 DEBUG Processing 381/657 atomic regions from SNP 114142 to 114742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,579 DEBUG Processing 578/913 atomic regions from SNP 173292 to 173892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,589 DEBUG Processing 498/1035 atomic regions from SNP 149135 to 149735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,605 DEBUG Processing 605/868 atomic regions from SNP 181420 to 182020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,646 DEBUG Processing 10/236 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:01,743 DEBUG Processing 459/1143 atomic regions from SNP 137679 to 138279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,803 DEBUG Processing 382/657 atomic regions from SNP 114442 to 115042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,856 DEBUG Processing 606/868 atomic regions from SNP 181720 to 182320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,857 DEBUG Processing 579/913 atomic regions from SNP 173592 to 174192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,871 DEBUG Processing 499/1035 atomic regions from SNP 149435 to 150035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,883 DEBUG Processing 11/236 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:02,019 DEBUG Processing 460/1143 atomic regions from SNP 137979 to 138579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,062 DEBUG Processing 383/657 atomic regions from SNP 114742 to 115342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,108 DEBUG Processing 607/868 atomic regions from SNP 182020 to 182620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,120 DEBUG Processing 12/236 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:02,139 DEBUG Processing 580/913 atomic regions from SNP 173892 to 174492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,152 DEBUG Processing 500/1035 atomic regions from SNP 149735 to 150335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,299 DEBUG Processing 461/1143 atomic regions from SNP 138279 to 138879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,314 DEBUG Processing 384/657 atomic regions from SNP 115042 to 115642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,364 DEBUG Processing 13/236 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:02,365 DEBUG Processing 608/868 atomic regions from SNP 182320 to 182920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,428 DEBUG Processing 581/913 atomic regions from SNP 174192 to 174792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,438 DEBUG Processing 501/1035 atomic regions from SNP 150035 to 150635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,572 DEBUG Processing 385/657 atomic regions from SNP 115342 to 115942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,588 DEBUG Processing 462/1143 atomic regions from SNP 138579 to 139179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,607 DEBUG Processing 14/236 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:02,622 DEBUG Processing 609/868 atomic regions from SNP 182620 to 183220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,708 DEBUG Processing 582/913 atomic regions from SNP 174492 to 175092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,712 DEBUG Processing 502/1035 atomic regions from SNP 150335 to 150935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,830 DEBUG Processing 386/657 atomic regions from SNP 115642 to 116242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,849 DEBUG Processing 15/236 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:02,876 DEBUG Processing 463/1143 atomic regions from SNP 138879 to 139479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,877 DEBUG Processing 610/868 atomic regions from SNP 182920 to 183520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,974 DEBUG Processing 583/913 atomic regions from SNP 174792 to 175392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,983 DEBUG Processing 503/1035 atomic regions from SNP 150635 to 151235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,074 DEBUG Processing 387/657 atomic regions from SNP 115942 to 116542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,088 DEBUG Processing 16/236 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:03,132 DEBUG Processing 611/868 atomic regions from SNP 183220 to 183820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,166 DEBUG Processing 464/1143 atomic regions from SNP 139179 to 139779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,234 DEBUG Processing 584/913 atomic regions from SNP 175092 to 175692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,261 DEBUG Processing 504/1035 atomic regions from SNP 150935 to 151535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,318 DEBUG Processing 388/657 atomic regions from SNP 116242 to 116842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,323 DEBUG Processing 17/236 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:03,387 DEBUG Processing 612/868 atomic regions from SNP 183520 to 184120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,455 DEBUG Processing 465/1143 atomic regions from SNP 139479 to 140079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,510 DEBUG Processing 585/913 atomic regions from SNP 175392 to 175992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,536 DEBUG Processing 505/1035 atomic regions from SNP 151235 to 151835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,550 DEBUG Processing 18/236 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:03,557 DEBUG Processing 389/657 atomic regions from SNP 116542 to 117142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,652 DEBUG Processing 613/868 atomic regions from SNP 183820 to 184420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,743 DEBUG Processing 466/1143 atomic regions from SNP 139779 to 140379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,788 DEBUG Processing 19/236 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:03,793 DEBUG Processing 586/913 atomic regions from SNP 175692 to 176292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,799 DEBUG Processing 390/657 atomic regions from SNP 116842 to 117442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,815 DEBUG Processing 506/1035 atomic regions from SNP 151535 to 152135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,917 DEBUG Processing 614/868 atomic regions from SNP 184120 to 184720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,034 DEBUG Processing 20/236 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:04,034 DEBUG Processing 467/1143 atomic regions from SNP 140079 to 140679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,053 DEBUG Processing 391/657 atomic regions from SNP 117142 to 117742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,082 DEBUG Processing 587/913 atomic regions from SNP 175992 to 176592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,096 DEBUG Processing 507/1035 atomic regions from SNP 151835 to 152435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,172 DEBUG Processing 615/868 atomic regions from SNP 184420 to 185020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,277 DEBUG Processing 21/236 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:04,306 DEBUG Processing 392/657 atomic regions from SNP 117442 to 118042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,327 DEBUG Processing 468/1143 atomic regions from SNP 140379 to 140979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,370 DEBUG Processing 588/913 atomic regions from SNP 176292 to 176892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,374 DEBUG Processing 508/1035 atomic regions from SNP 152135 to 152735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,424 DEBUG Processing 616/868 atomic regions from SNP 184720 to 185320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,507 DEBUG Processing 22/236 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:04,555 DEBUG Processing 393/657 atomic regions from SNP 117742 to 118342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,618 DEBUG Processing 469/1143 atomic regions from SNP 140679 to 141279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,653 DEBUG Processing 589/913 atomic regions from SNP 176592 to 177192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,659 DEBUG Processing 509/1035 atomic regions from SNP 152435 to 153035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,691 DEBUG Processing 617/868 atomic regions from SNP 185020 to 185620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,741 DEBUG Processing 23/236 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:04,798 DEBUG Processing 394/657 atomic regions from SNP 118042 to 118642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,915 DEBUG Processing 470/1143 atomic regions from SNP 140979 to 141579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,938 DEBUG Processing 590/913 atomic regions from SNP 176892 to 177492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,943 DEBUG Processing 510/1035 atomic regions from SNP 152735 to 153335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,963 DEBUG Processing 618/868 atomic regions from SNP 185320 to 185920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,973 DEBUG Processing 24/236 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:05,033 DEBUG Processing 395/657 atomic regions from SNP 118342 to 118942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,214 DEBUG Processing 25/236 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:05,214 DEBUG Processing 591/913 atomic regions from SNP 177192 to 177792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,219 DEBUG Processing 471/1143 atomic regions from SNP 141279 to 141879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,223 DEBUG Processing 619/868 atomic regions from SNP 185620 to 186220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,229 DEBUG Processing 511/1035 atomic regions from SNP 153035 to 153635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,272 DEBUG Processing 396/657 atomic regions from SNP 118642 to 119242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,456 DEBUG Processing 26/236 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:05,482 DEBUG Processing 620/868 atomic regions from SNP 185920 to 186520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,496 DEBUG Processing 592/913 atomic regions from SNP 177492 to 178092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,520 DEBUG Processing 512/1035 atomic regions from SNP 153335 to 153935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,522 DEBUG Processing 397/657 atomic regions from SNP 118942 to 119542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,526 DEBUG Processing 472/1143 atomic regions from SNP 141579 to 142179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,694 DEBUG Processing 27/236 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:05,743 DEBUG Processing 621/868 atomic regions from SNP 186220 to 186820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,777 DEBUG Processing 398/657 atomic regions from SNP 119242 to 119842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,786 DEBUG Processing 593/913 atomic regions from SNP 177792 to 178392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,804 DEBUG Processing 513/1035 atomic regions from SNP 153635 to 154235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,842 DEBUG Processing 473/1143 atomic regions from SNP 141879 to 142479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,918 DEBUG Processing 28/236 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:05,985 DEBUG Processing 622/868 atomic regions from SNP 186520 to 187120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,024 DEBUG Processing 399/657 atomic regions from SNP 119542 to 120142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,069 DEBUG Processing 594/913 atomic regions from SNP 178092 to 178692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,079 DEBUG Processing 514/1035 atomic regions from SNP 153935 to 154535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,141 DEBUG Processing 474/1143 atomic regions from SNP 142179 to 142779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,148 DEBUG Processing 29/236 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:06,226 DEBUG Processing 623/868 atomic regions from SNP 186820 to 187420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,266 DEBUG Processing 400/657 atomic regions from SNP 119842 to 120442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,347 DEBUG Processing 595/913 atomic regions from SNP 178392 to 178992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,354 DEBUG Processing 515/1035 atomic regions from SNP 154235 to 154835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,378 DEBUG Processing 30/236 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:06,425 DEBUG Processing 475/1143 atomic regions from SNP 142479 to 143079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,479 DEBUG Processing 624/868 atomic regions from SNP 187120 to 187720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,503 DEBUG Processing 401/657 atomic regions from SNP 120142 to 120742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,615 DEBUG Processing 31/236 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:06,620 DEBUG Processing 596/913 atomic regions from SNP 178692 to 179292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,637 DEBUG Processing 516/1035 atomic regions from SNP 154535 to 155135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,705 DEBUG Processing 476/1143 atomic regions from SNP 142779 to 143379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,740 DEBUG Processing 402/657 atomic regions from SNP 120442 to 121042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,748 DEBUG Processing 625/868 atomic regions from SNP 187420 to 188020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,847 DEBUG Processing 32/236 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:06,883 DEBUG Processing 597/913 atomic regions from SNP 178992 to 179592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,915 DEBUG Processing 517/1035 atomic regions from SNP 154835 to 155435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,979 DEBUG Processing 403/657 atomic regions from SNP 120742 to 121342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,981 DEBUG Processing 477/1143 atomic regions from SNP 143079 to 143679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,001 DEBUG Processing 626/868 atomic regions from SNP 187720 to 188320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,079 DEBUG Processing 33/236 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:07,136 DEBUG Processing 598/913 atomic regions from SNP 179292 to 179892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,193 DEBUG Processing 518/1035 atomic regions from SNP 155135 to 155735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,221 DEBUG Processing 404/657 atomic regions from SNP 121042 to 121642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,242 DEBUG Processing 627/868 atomic regions from SNP 188020 to 188620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,255 DEBUG Processing 478/1143 atomic regions from SNP 143379 to 143979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,305 DEBUG Processing 34/236 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:07,392 DEBUG Processing 599/913 atomic regions from SNP 179592 to 180192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,473 DEBUG Processing 405/657 atomic regions from SNP 121342 to 121942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,480 DEBUG Processing 519/1035 atomic regions from SNP 155435 to 156035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,490 DEBUG Processing 628/868 atomic regions from SNP 188320 to 188920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,539 DEBUG Processing 479/1143 atomic regions from SNP 143679 to 144279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,541 DEBUG Processing 35/236 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:07,651 DEBUG Processing 600/913 atomic regions from SNP 179892 to 180492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,730 DEBUG Processing 406/657 atomic regions from SNP 121642 to 122242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,744 DEBUG Processing 629/868 atomic regions from SNP 188620 to 189220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,765 DEBUG Processing 520/1035 atomic regions from SNP 155735 to 156335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,775 DEBUG Processing 36/236 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:07,822 DEBUG Processing 480/1143 atomic regions from SNP 143979 to 144579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,891 DEBUG Processing 601/913 atomic regions from SNP 180192 to 180792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,975 DEBUG Processing 407/657 atomic regions from SNP 121942 to 122542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,986 DEBUG Processing 630/868 atomic regions from SNP 188920 to 189520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,006 DEBUG Processing 37/236 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:08,040 DEBUG Processing 521/1035 atomic regions from SNP 156035 to 156635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,098 DEBUG Processing 481/1143 atomic regions from SNP 144279 to 144879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,146 DEBUG Processing 602/913 atomic regions from SNP 180492 to 181092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,221 DEBUG Processing 408/657 atomic regions from SNP 122242 to 122842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,230 DEBUG Processing 631/868 atomic regions from SNP 189220 to 189820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,236 DEBUG Processing 38/236 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:08,310 DEBUG Processing 522/1035 atomic regions from SNP 156335 to 156935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,373 DEBUG Processing 482/1143 atomic regions from SNP 144579 to 145179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,418 DEBUG Processing 603/913 atomic regions from SNP 180792 to 181392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,465 DEBUG Processing 409/657 atomic regions from SNP 122542 to 123142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,466 DEBUG Processing 39/236 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:08,472 DEBUG Processing 632/868 atomic regions from SNP 189520 to 190120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,574 DEBUG Processing 523/1035 atomic regions from SNP 156635 to 157235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,649 DEBUG Processing 483/1143 atomic regions from SNP 144879 to 145479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,700 DEBUG Processing 40/236 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:08,711 DEBUG Processing 604/913 atomic regions from SNP 181092 to 181692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,716 DEBUG Processing 410/657 atomic regions from SNP 122842 to 123442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,735 DEBUG Processing 633/868 atomic regions from SNP 189820 to 190420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,859 DEBUG Processing 524/1035 atomic regions from SNP 156935 to 157535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,930 DEBUG Processing 484/1143 atomic regions from SNP 145179 to 145779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,938 DEBUG Processing 41/236 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:08,967 DEBUG Processing 411/657 atomic regions from SNP 123142 to 123742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,992 DEBUG Processing 605/913 atomic regions from SNP 181392 to 181992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,996 DEBUG Processing 634/868 atomic regions from SNP 190120 to 190720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,134 DEBUG Processing 525/1035 atomic regions from SNP 157235 to 157835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,173 DEBUG Processing 42/236 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:09,218 DEBUG Processing 412/657 atomic regions from SNP 123442 to 124042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,221 DEBUG Processing 485/1143 atomic regions from SNP 145479 to 146079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,275 DEBUG Processing 635/868 atomic regions from SNP 190420 to 191020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,278 DEBUG Processing 606/913 atomic regions from SNP 181692 to 182292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,405 DEBUG Processing 43/236 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:09,424 DEBUG Processing 526/1035 atomic regions from SNP 157535 to 158135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,456 DEBUG Processing 413/657 atomic regions from SNP 123742 to 124342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,530 DEBUG Processing 486/1143 atomic regions from SNP 145779 to 146379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,547 DEBUG Processing 636/868 atomic regions from SNP 190720 to 191320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,566 DEBUG Processing 607/913 atomic regions from SNP 181992 to 182592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,638 DEBUG Processing 44/236 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:09,693 DEBUG Processing 414/657 atomic regions from SNP 124042 to 124642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,715 DEBUG Processing 527/1035 atomic regions from SNP 157835 to 158435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,821 DEBUG Processing 637/868 atomic regions from SNP 191020 to 191620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,849 DEBUG Processing 487/1143 atomic regions from SNP 146079 to 146679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,857 DEBUG Processing 608/913 atomic regions from SNP 182292 to 182892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,875 DEBUG Processing 45/236 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:09,933 DEBUG Processing 415/657 atomic regions from SNP 124342 to 124942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,002 DEBUG Processing 528/1035 atomic regions from SNP 158135 to 158735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,095 DEBUG Processing 638/868 atomic regions from SNP 191320 to 191920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,117 DEBUG Processing 46/236 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:10,146 DEBUG Processing 609/913 atomic regions from SNP 182592 to 183192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,154 DEBUG Processing 488/1143 atomic regions from SNP 146379 to 146979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,172 DEBUG Processing 416/657 atomic regions from SNP 124642 to 125242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,279 DEBUG Processing 529/1035 atomic regions from SNP 158435 to 159035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,355 DEBUG Processing 47/236 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:10,368 DEBUG Processing 639/868 atomic regions from SNP 191620 to 192220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,427 DEBUG Processing 417/657 atomic regions from SNP 124942 to 125542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,432 DEBUG Processing 610/913 atomic regions from SNP 182892 to 183492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,460 DEBUG Processing 489/1143 atomic regions from SNP 146679 to 147279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,559 DEBUG Processing 530/1035 atomic regions from SNP 158735 to 159335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,591 DEBUG Processing 48/236 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:10,643 DEBUG Processing 640/868 atomic regions from SNP 191920 to 192520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,690 DEBUG Processing 418/657 atomic regions from SNP 125242 to 125842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,717 DEBUG Processing 611/913 atomic regions from SNP 183192 to 183792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,758 DEBUG Processing 490/1143 atomic regions from SNP 146979 to 147579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,829 DEBUG Processing 49/236 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:10,844 DEBUG Processing 531/1035 atomic regions from SNP 159035 to 159635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,931 DEBUG Processing 641/868 atomic regions from SNP 192220 to 192820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,947 DEBUG Processing 419/657 atomic regions from SNP 125542 to 126142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,004 DEBUG Processing 612/913 atomic regions from SNP 183492 to 184092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,061 DEBUG Processing 50/236 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:11,076 DEBUG Processing 491/1143 atomic regions from SNP 147279 to 147879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,132 DEBUG Processing 532/1035 atomic regions from SNP 159335 to 159935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,193 DEBUG Processing 420/657 atomic regions from SNP 125842 to 126442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,210 DEBUG Processing 642/868 atomic regions from SNP 192520 to 193120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,286 DEBUG Processing 613/913 atomic regions from SNP 183792 to 184392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,299 DEBUG Processing 51/236 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:11,399 DEBUG Processing 492/1143 atomic regions from SNP 147579 to 148179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,439 DEBUG Processing 533/1035 atomic regions from SNP 159635 to 160235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,447 DEBUG Processing 421/657 atomic regions from SNP 126142 to 126742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,482 DEBUG Processing 643/868 atomic regions from SNP 192820 to 193420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,534 DEBUG Processing 52/236 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:11,563 DEBUG Processing 614/913 atomic regions from SNP 184092 to 184692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,714 DEBUG Processing 422/657 atomic regions from SNP 126442 to 127042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,717 DEBUG Processing 493/1143 atomic regions from SNP 147879 to 148479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,736 DEBUG Processing 534/1035 atomic regions from SNP 159935 to 160535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,757 DEBUG Processing 644/868 atomic regions from SNP 193120 to 193720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,776 DEBUG Processing 53/236 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:11,837 DEBUG Processing 615/913 atomic regions from SNP 184392 to 184992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,979 DEBUG Processing 423/657 atomic regions from SNP 126742 to 127342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,017 DEBUG Processing 54/236 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:12,021 DEBUG Processing 494/1143 atomic regions from SNP 148179 to 148779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,030 DEBUG Processing 535/1035 atomic regions from SNP 160235 to 160835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,034 DEBUG Processing 645/868 atomic regions from SNP 193420 to 194020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,089 DEBUG Processing 616/913 atomic regions from SNP 184692 to 185292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,238 DEBUG Processing 424/657 atomic regions from SNP 127042 to 127642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,255 DEBUG Processing 55/236 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:12,319 DEBUG Processing 646/868 atomic regions from SNP 193720 to 194320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,325 DEBUG Processing 495/1143 atomic regions from SNP 148479 to 149079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,344 DEBUG Processing 536/1035 atomic regions from SNP 160535 to 161135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,348 DEBUG Processing 617/913 atomic regions from SNP 184992 to 185592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,484 DEBUG Processing 425/657 atomic regions from SNP 127342 to 127942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,490 DEBUG Processing 56/236 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:12,583 DEBUG Processing 647/868 atomic regions from SNP 194020 to 194620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,604 DEBUG Processing 618/913 atomic regions from SNP 185292 to 185892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,638 DEBUG Processing 537/1035 atomic regions from SNP 160835 to 161435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,644 DEBUG Processing 496/1143 atomic regions from SNP 148779 to 149379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,724 DEBUG Processing 57/236 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:12,731 DEBUG Processing 426/657 atomic regions from SNP 127642 to 128242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,843 DEBUG Processing 648/868 atomic regions from SNP 194320 to 194920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,866 DEBUG Processing 619/913 atomic regions from SNP 185592 to 186192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,935 DEBUG Processing 538/1035 atomic regions from SNP 161135 to 161735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,966 DEBUG Processing 58/236 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:12,969 DEBUG Processing 497/1143 atomic regions from SNP 149079 to 149679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,992 DEBUG Processing 427/657 atomic regions from SNP 127942 to 128542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,089 DEBUG Processing 649/868 atomic regions from SNP 194620 to 195220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,116 DEBUG Processing 620/913 atomic regions from SNP 185892 to 186492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,209 DEBUG Processing 59/236 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:13,226 DEBUG Processing 539/1035 atomic regions from SNP 161435 to 162035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,255 DEBUG Processing 428/657 atomic regions from SNP 128242 to 128842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,279 DEBUG Processing 498/1143 atomic regions from SNP 149379 to 149979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,337 DEBUG Processing 650/868 atomic regions from SNP 194920 to 195520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,368 DEBUG Processing 621/913 atomic regions from SNP 186192 to 186792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,449 DEBUG Processing 60/236 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:13,520 DEBUG Processing 540/1035 atomic regions from SNP 161735 to 162335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,535 DEBUG Processing 429/657 atomic regions from SNP 128542 to 129142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,590 DEBUG Processing 651/868 atomic regions from SNP 195220 to 195820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,605 DEBUG Processing 499/1143 atomic regions from SNP 149679 to 150279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,618 DEBUG Processing 622/913 atomic regions from SNP 186492 to 187092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,678 DEBUG Processing 61/236 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:13,810 DEBUG Processing 541/1035 atomic regions from SNP 162035 to 162635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,817 DEBUG Processing 430/657 atomic regions from SNP 128842 to 129442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,848 DEBUG Processing 652/868 atomic regions from SNP 195520 to 196120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,874 DEBUG Processing 623/913 atomic regions from SNP 186792 to 187392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,910 DEBUG Processing 62/236 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:13,927 DEBUG Processing 500/1143 atomic regions from SNP 149979 to 150579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,095 DEBUG Processing 431/657 atomic regions from SNP 129142 to 129742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,102 DEBUG Processing 653/868 atomic regions from SNP 195820 to 196420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,108 DEBUG Processing 542/1035 atomic regions from SNP 162335 to 162935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,130 DEBUG Processing 624/913 atomic regions from SNP 187092 to 187692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,143 DEBUG Processing 63/236 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:14,233 DEBUG Processing 501/1143 atomic regions from SNP 150279 to 150879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,358 DEBUG Processing 654/868 atomic regions from SNP 196120 to 196720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,371 DEBUG Processing 432/657 atomic regions from SNP 129442 to 130042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,388 DEBUG Processing 64/236 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:14,394 DEBUG Processing 625/913 atomic regions from SNP 187392 to 187992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,407 DEBUG Processing 543/1035 atomic regions from SNP 162635 to 163235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,522 DEBUG Processing 502/1143 atomic regions from SNP 150579 to 151179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,613 DEBUG Processing 655/868 atomic regions from SNP 196420 to 197020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,637 DEBUG Processing 65/236 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:14,647 DEBUG Processing 433/657 atomic regions from SNP 129742 to 130342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,657 DEBUG Processing 626/913 atomic regions from SNP 187692 to 188292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,703 DEBUG Processing 544/1035 atomic regions from SNP 162935 to 163535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,827 DEBUG Processing 503/1143 atomic regions from SNP 150879 to 151479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,870 DEBUG Processing 656/868 atomic regions from SNP 196720 to 197320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,877 DEBUG Processing 66/236 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:14,918 DEBUG Processing 627/913 atomic regions from SNP 187992 to 188592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,927 DEBUG Processing 434/657 atomic regions from SNP 130042 to 130642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,004 DEBUG Processing 545/1035 atomic regions from SNP 163235 to 163835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,114 DEBUG Processing 67/236 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:15,136 DEBUG Processing 504/1143 atomic regions from SNP 151179 to 151779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,143 DEBUG Processing 657/868 atomic regions from SNP 197020 to 197620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,178 DEBUG Processing 628/913 atomic regions from SNP 188292 to 188892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,205 DEBUG Processing 435/657 atomic regions from SNP 130342 to 130942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,283 DEBUG Processing 546/1035 atomic regions from SNP 163535 to 164135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,341 DEBUG Processing 68/236 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:15,399 DEBUG Processing 658/868 atomic regions from SNP 197320 to 197920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,431 DEBUG Processing 629/913 atomic regions from SNP 188592 to 189192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,441 DEBUG Processing 505/1143 atomic regions from SNP 151479 to 152079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,474 DEBUG Processing 436/657 atomic regions from SNP 130642 to 131242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,565 DEBUG Processing 547/1035 atomic regions from SNP 163835 to 164435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,571 DEBUG Processing 69/236 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:15,644 DEBUG Processing 659/868 atomic regions from SNP 197620 to 198220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,681 DEBUG Processing 630/913 atomic regions from SNP 188892 to 189492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,742 DEBUG Processing 506/1143 atomic regions from SNP 151779 to 152379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,746 DEBUG Processing 437/657 atomic regions from SNP 130942 to 131542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,808 DEBUG Processing 70/236 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:15,854 DEBUG Processing 548/1035 atomic regions from SNP 164135 to 164735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,887 DEBUG Processing 660/868 atomic regions from SNP 197920 to 198520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,920 DEBUG Processing 631/913 atomic regions from SNP 189192 to 189792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,011 DEBUG Processing 438/657 atomic regions from SNP 131242 to 131842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,023 DEBUG Processing 507/1143 atomic regions from SNP 152079 to 152679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,045 DEBUG Processing 71/236 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:16,137 DEBUG Processing 549/1035 atomic regions from SNP 164435 to 165035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,150 DEBUG Processing 661/868 atomic regions from SNP 198220 to 198820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,165 DEBUG Processing 632/913 atomic regions from SNP 189492 to 190092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,269 DEBUG Processing 439/657 atomic regions from SNP 131542 to 132142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,276 DEBUG Processing 72/236 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:16,302 DEBUG Processing 508/1143 atomic regions from SNP 152379 to 152979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,412 DEBUG Processing 550/1035 atomic regions from SNP 164735 to 165335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,413 DEBUG Processing 633/913 atomic regions from SNP 189792 to 190392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,415 DEBUG Processing 662/868 atomic regions from SNP 198520 to 199120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,505 DEBUG Processing 73/236 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:16,509 DEBUG Processing 440/657 atomic regions from SNP 131842 to 132442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,578 DEBUG Processing 509/1143 atomic regions from SNP 152679 to 153279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,664 DEBUG Processing 634/913 atomic regions from SNP 190092 to 190692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,679 DEBUG Processing 663/868 atomic regions from SNP 198820 to 199420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,689 DEBUG Processing 551/1035 atomic regions from SNP 165035 to 165635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,739 DEBUG Processing 74/236 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:16,768 DEBUG Processing 441/657 atomic regions from SNP 132142 to 132742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,856 DEBUG Processing 510/1143 atomic regions from SNP 152979 to 153579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,915 DEBUG Processing 635/913 atomic regions from SNP 190392 to 190992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,943 DEBUG Processing 664/868 atomic regions from SNP 199120 to 199720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,969 DEBUG Processing 552/1035 atomic regions from SNP 165335 to 165935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,979 DEBUG Processing 75/236 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:17,037 DEBUG Processing 442/657 atomic regions from SNP 132442 to 133042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,132 DEBUG Processing 511/1143 atomic regions from SNP 153279 to 153879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,168 DEBUG Processing 636/913 atomic regions from SNP 190692 to 191292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,204 DEBUG Processing 665/868 atomic regions from SNP 199420 to 200020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,220 DEBUG Processing 76/236 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:17,256 DEBUG Processing 553/1035 atomic regions from SNP 165635 to 166235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,307 DEBUG Processing 443/657 atomic regions from SNP 132742 to 133342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,415 DEBUG Processing 512/1143 atomic regions from SNP 153579 to 154179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,418 DEBUG Processing 637/913 atomic regions from SNP 190992 to 191592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,460 DEBUG Processing 77/236 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:17,462 DEBUG Processing 666/868 atomic regions from SNP 199720 to 200320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,540 DEBUG Processing 554/1035 atomic regions from SNP 165935 to 166535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,574 DEBUG Processing 444/657 atomic regions from SNP 133042 to 133642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,666 DEBUG Processing 638/913 atomic regions from SNP 191292 to 191892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,693 DEBUG Processing 78/236 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:17,703 DEBUG Processing 513/1143 atomic regions from SNP 153879 to 154479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,708 DEBUG Processing 667/868 atomic regions from SNP 200020 to 200620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,823 DEBUG Processing 555/1035 atomic regions from SNP 166235 to 166835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,830 DEBUG Processing 445/657 atomic regions from SNP 133342 to 133942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,919 DEBUG Processing 639/913 atomic regions from SNP 191592 to 192192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,929 DEBUG Processing 79/236 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:17,958 DEBUG Processing 668/868 atomic regions from SNP 200320 to 200920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,008 DEBUG Processing 514/1143 atomic regions from SNP 154179 to 154779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,083 DEBUG Processing 446/657 atomic regions from SNP 133642 to 134242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,096 DEBUG Processing 556/1035 atomic regions from SNP 166535 to 167135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,170 DEBUG Processing 640/913 atomic regions from SNP 191892 to 192492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,178 DEBUG Processing 80/236 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:18,208 DEBUG Processing 669/868 atomic regions from SNP 200620 to 201220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,318 DEBUG Processing 515/1143 atomic regions from SNP 154479 to 155079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,342 DEBUG Processing 447/657 atomic regions from SNP 133942 to 134542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,371 DEBUG Processing 557/1035 atomic regions from SNP 166835 to 167435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,420 DEBUG Processing 81/236 atomic regions from SNP 24080 to 24680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:18,427 DEBUG Processing 641/913 atomic regions from SNP 192192 to 192792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,455 DEBUG Processing 670/868 atomic regions from SNP 200920 to 201520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,606 DEBUG Processing 448/657 atomic regions from SNP 134242 to 134842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,627 DEBUG Processing 516/1143 atomic regions from SNP 154779 to 155379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,650 DEBUG Processing 558/1035 atomic regions from SNP 167135 to 167735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,664 DEBUG Processing 82/236 atomic regions from SNP 24380 to 24980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:18,686 DEBUG Processing 642/913 atomic regions from SNP 192492 to 193092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,704 DEBUG Processing 671/868 atomic regions from SNP 201220 to 201820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,874 DEBUG Processing 449/657 atomic regions from SNP 134542 to 135142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,906 DEBUG Processing 83/236 atomic regions from SNP 24680 to 25280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:18,935 DEBUG Processing 559/1035 atomic regions from SNP 167435 to 168035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,938 DEBUG Processing 517/1143 atomic regions from SNP 155079 to 155679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,948 DEBUG Processing 643/913 atomic regions from SNP 192792 to 193392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,960 DEBUG Processing 672/868 atomic regions from SNP 201520 to 202120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,117 DEBUG Processing 450/657 atomic regions from SNP 134842 to 135442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,133 DEBUG Processing 84/236 atomic regions from SNP 24980 to 25580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:19,199 DEBUG Processing 644/913 atomic regions from SNP 193092 to 193692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,206 DEBUG Processing 673/868 atomic regions from SNP 201820 to 202420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,210 DEBUG Processing 560/1035 atomic regions from SNP 167735 to 168335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,243 DEBUG Processing 518/1143 atomic regions from SNP 155379 to 155979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,356 DEBUG Processing 85/236 atomic regions from SNP 25280 to 25880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:19,365 DEBUG Processing 451/657 atomic regions from SNP 135142 to 135742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,447 DEBUG Processing 645/913 atomic regions from SNP 193392 to 193992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,454 DEBUG Processing 674/868 atomic regions from SNP 202120 to 202720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,482 DEBUG Processing 561/1035 atomic regions from SNP 168035 to 168635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,534 DEBUG Processing 519/1143 atomic regions from SNP 155679 to 156279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,586 DEBUG Processing 86/236 atomic regions from SNP 25580 to 26180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:19,634 DEBUG Processing 452/657 atomic regions from SNP 135442 to 136042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,693 DEBUG Processing 646/913 atomic regions from SNP 193692 to 194292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,723 DEBUG Processing 675/868 atomic regions from SNP 202420 to 203020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,759 DEBUG Processing 562/1035 atomic regions from SNP 168335 to 168935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,819 DEBUG Processing 87/236 atomic regions from SNP 25880 to 26480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:19,823 DEBUG Processing 520/1143 atomic regions from SNP 155979 to 156579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,905 DEBUG Processing 453/657 atomic regions from SNP 135742 to 136342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,947 DEBUG Processing 647/913 atomic regions from SNP 193992 to 194592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,000 DEBUG Processing 676/868 atomic regions from SNP 202720 to 203320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,052 DEBUG Processing 563/1035 atomic regions from SNP 168635 to 169235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,067 DEBUG Processing 88/236 atomic regions from SNP 26180 to 26780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:20,137 DEBUG Processing 521/1143 atomic regions from SNP 156279 to 156879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,165 DEBUG Processing 454/657 atomic regions from SNP 136042 to 136642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,197 DEBUG Processing 648/913 atomic regions from SNP 194292 to 194892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,274 DEBUG Processing 677/868 atomic regions from SNP 203020 to 203620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,303 DEBUG Processing 89/236 atomic regions from SNP 26480 to 27080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:20,331 DEBUG Processing 564/1035 atomic regions from SNP 168935 to 169535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,410 DEBUG Processing 455/657 atomic regions from SNP 136342 to 136942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,445 DEBUG Processing 649/913 atomic regions from SNP 194592 to 195192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,450 DEBUG Processing 522/1143 atomic regions from SNP 156579 to 157179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,534 DEBUG Processing 90/236 atomic regions from SNP 26780 to 27380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:20,555 DEBUG Processing 678/868 atomic regions from SNP 203320 to 203920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,609 DEBUG Processing 565/1035 atomic regions from SNP 169235 to 169835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,654 DEBUG Processing 456/657 atomic regions from SNP 136642 to 137242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,693 DEBUG Processing 650/913 atomic regions from SNP 194892 to 195492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,764 DEBUG Processing 91/236 atomic regions from SNP 27080 to 27680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:20,765 DEBUG Processing 523/1143 atomic regions from SNP 156879 to 157479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,833 DEBUG Processing 679/868 atomic regions from SNP 203620 to 204220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,887 DEBUG Processing 566/1035 atomic regions from SNP 169535 to 170135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,902 DEBUG Processing 457/657 atomic regions from SNP 136942 to 137542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,963 DEBUG Processing 651/913 atomic regions from SNP 195192 to 195792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,991 DEBUG Processing 92/236 atomic regions from SNP 27380 to 27980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:21,076 DEBUG Processing 524/1143 atomic regions from SNP 157179 to 157779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,093 DEBUG Processing 680/868 atomic regions from SNP 203920 to 204520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,142 DEBUG Processing 458/657 atomic regions from SNP 137242 to 137842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,156 DEBUG Processing 567/1035 atomic regions from SNP 169835 to 170435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,220 DEBUG Processing 93/236 atomic regions from SNP 27680 to 28280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:21,236 DEBUG Processing 652/913 atomic regions from SNP 195492 to 196092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,353 DEBUG Processing 681/868 atomic regions from SNP 204220 to 204820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,385 DEBUG Processing 525/1143 atomic regions from SNP 157479 to 158079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,395 DEBUG Processing 459/657 atomic regions from SNP 137542 to 138142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,427 DEBUG Processing 568/1035 atomic regions from SNP 170135 to 170735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,448 DEBUG Processing 94/236 atomic regions from SNP 27980 to 28580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:21,498 DEBUG Processing 653/913 atomic regions from SNP 195792 to 196392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,613 DEBUG Processing 682/868 atomic regions from SNP 204520 to 205120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,632 DEBUG Processing 460/657 atomic regions from SNP 137842 to 138442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,681 DEBUG Processing 95/236 atomic regions from SNP 28280 to 28880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:21,691 DEBUG Processing 526/1143 atomic regions from SNP 157779 to 158379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,701 DEBUG Processing 569/1035 atomic regions from SNP 170435 to 171035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,761 DEBUG Processing 654/913 atomic regions from SNP 196092 to 196692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,867 DEBUG Processing 683/868 atomic regions from SNP 204820 to 205420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,887 DEBUG Processing 461/657 atomic regions from SNP 138142 to 138742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,910 DEBUG Processing 96/236 atomic regions from SNP 28580 to 29180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:21,979 DEBUG Processing 570/1035 atomic regions from SNP 170735 to 171335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,006 DEBUG Processing 527/1143 atomic regions from SNP 158079 to 158679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,036 DEBUG Processing 655/913 atomic regions from SNP 196392 to 196992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,130 DEBUG Processing 684/868 atomic regions from SNP 205120 to 205720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,134 DEBUG Processing 97/236 atomic regions from SNP 28880 to 29480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:22,139 DEBUG Processing 462/657 atomic regions from SNP 138442 to 139042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,252 DEBUG Processing 571/1035 atomic regions from SNP 171035 to 171635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,318 DEBUG Processing 656/913 atomic regions from SNP 196692 to 197292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,322 DEBUG Processing 528/1143 atomic regions from SNP 158379 to 158979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,362 DEBUG Processing 98/236 atomic regions from SNP 29180 to 29780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:22,392 DEBUG Processing 685/868 atomic regions from SNP 205420 to 206020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,400 DEBUG Processing 463/657 atomic regions from SNP 138742 to 139342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,525 DEBUG Processing 572/1035 atomic regions from SNP 171335 to 171935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,600 DEBUG Processing 99/236 atomic regions from SNP 29480 to 30080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:22,601 DEBUG Processing 657/913 atomic regions from SNP 196992 to 197592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,647 DEBUG Processing 529/1143 atomic regions from SNP 158679 to 159279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,652 DEBUG Processing 464/657 atomic regions from SNP 139042 to 139642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,673 DEBUG Processing 686/868 atomic regions from SNP 205720 to 206320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,796 DEBUG Processing 573/1035 atomic regions from SNP 171635 to 172235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,841 DEBUG Processing 100/236 atomic regions from SNP 29780 to 30380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:22,878 DEBUG Processing 658/913 atomic regions from SNP 197292 to 197892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,908 DEBUG Processing 465/657 atomic regions from SNP 139342 to 139942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,942 DEBUG Processing 687/868 atomic regions from SNP 206020 to 206620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,959 DEBUG Processing 530/1143 atomic regions from SNP 158979 to 159579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,068 DEBUG Processing 574/1035 atomic regions from SNP 171935 to 172535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,080 DEBUG Processing 101/236 atomic regions from SNP 30080 to 30680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:23,147 DEBUG Processing 659/913 atomic regions from SNP 197592 to 198192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,166 DEBUG Processing 466/657 atomic regions from SNP 139642 to 140242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,215 DEBUG Processing 688/868 atomic regions from SNP 206320 to 206920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,270 DEBUG Processing 531/1143 atomic regions from SNP 159279 to 159879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,314 DEBUG Processing 102/236 atomic regions from SNP 30380 to 30980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:23,348 DEBUG Processing 575/1035 atomic regions from SNP 172235 to 172835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,406 DEBUG Processing 660/913 atomic regions from SNP 197892 to 198492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,425 DEBUG Processing 467/657 atomic regions from SNP 139942 to 140542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,489 DEBUG Processing 689/868 atomic regions from SNP 206620 to 207220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,550 DEBUG Processing 103/236 atomic regions from SNP 30680 to 31280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:23,587 DEBUG Processing 532/1143 atomic regions from SNP 159579 to 160179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,626 DEBUG Processing 576/1035 atomic regions from SNP 172535 to 173135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,655 DEBUG Processing 661/913 atomic regions from SNP 198192 to 198792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,671 DEBUG Processing 468/657 atomic regions from SNP 140242 to 140842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,747 DEBUG Processing 690/868 atomic regions from SNP 206920 to 207520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,779 DEBUG Processing 104/236 atomic regions from SNP 30980 to 31580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:23,910 DEBUG Processing 533/1143 atomic regions from SNP 159879 to 160479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,914 DEBUG Processing 662/913 atomic regions from SNP 198492 to 199092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,917 DEBUG Processing 577/1035 atomic regions from SNP 172835 to 173435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,922 DEBUG Processing 469/657 atomic regions from SNP 140542 to 141142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,007 DEBUG Processing 105/236 atomic regions from SNP 31280 to 31880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:24,013 DEBUG Processing 691/868 atomic regions from SNP 207220 to 207820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,176 DEBUG Processing 663/913 atomic regions from SNP 198792 to 199392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,182 DEBUG Processing 470/657 atomic regions from SNP 140842 to 141442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,208 DEBUG Processing 578/1035 atomic regions from SNP 173135 to 173735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,240 DEBUG Processing 534/1143 atomic regions from SNP 160179 to 160779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,246 DEBUG Processing 106/236 atomic regions from SNP 31580 to 32180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:24,285 DEBUG Processing 692/868 atomic regions from SNP 207520 to 208120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,434 DEBUG Processing 664/913 atomic regions from SNP 199092 to 199692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,448 DEBUG Processing 471/657 atomic regions from SNP 141142 to 141742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,490 DEBUG Processing 107/236 atomic regions from SNP 31880 to 32480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:24,497 DEBUG Processing 579/1035 atomic regions from SNP 173435 to 174035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,564 DEBUG Processing 693/868 atomic regions from SNP 207820 to 208420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,566 DEBUG Processing 535/1143 atomic regions from SNP 160479 to 161079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,682 DEBUG Processing 665/913 atomic regions from SNP 199392 to 199992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,715 DEBUG Processing 472/657 atomic regions from SNP 141442 to 142042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,728 DEBUG Processing 108/236 atomic regions from SNP 32180 to 32780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:24,779 DEBUG Processing 580/1035 atomic regions from SNP 173735 to 174335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,848 DEBUG Processing 694/868 atomic regions from SNP 208120 to 208720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,880 DEBUG Processing 536/1143 atomic regions from SNP 160779 to 161379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,928 DEBUG Processing 666/913 atomic regions from SNP 199692 to 200292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,961 DEBUG Processing 109/236 atomic regions from SNP 32480 to 33080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:24,974 DEBUG Processing 473/657 atomic regions from SNP 141742 to 142342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,060 DEBUG Processing 581/1035 atomic regions from SNP 174035 to 174635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,118 DEBUG Processing 695/868 atomic regions from SNP 208420 to 209020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,177 DEBUG Processing 667/913 atomic regions from SNP 199992 to 200592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,191 DEBUG Processing 537/1143 atomic regions from SNP 161079 to 161679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,206 DEBUG Processing 110/236 atomic regions from SNP 32780 to 33380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:25,241 DEBUG Processing 474/657 atomic regions from SNP 142042 to 142642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,337 DEBUG Processing 582/1035 atomic regions from SNP 174335 to 174935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,387 DEBUG Processing 696/868 atomic regions from SNP 208720 to 209320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,426 DEBUG Processing 668/913 atomic regions from SNP 200292 to 200892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,437 DEBUG Processing 111/236 atomic regions from SNP 33080 to 33680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:25,504 DEBUG Processing 538/1143 atomic regions from SNP 161379 to 161979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,509 DEBUG Processing 475/657 atomic regions from SNP 142342 to 142942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,612 DEBUG Processing 583/1035 atomic regions from SNP 174635 to 175235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,650 DEBUG Processing 697/868 atomic regions from SNP 209020 to 209620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,668 DEBUG Processing 112/236 atomic regions from SNP 33380 to 33980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:25,674 DEBUG Processing 669/913 atomic regions from SNP 200592 to 201192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,771 DEBUG Processing 476/657 atomic regions from SNP 142642 to 143242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,801 DEBUG Processing 539/1143 atomic regions from SNP 161679 to 162279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,889 DEBUG Processing 584/1035 atomic regions from SNP 174935 to 175535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,903 DEBUG Processing 113/236 atomic regions from SNP 33680 to 34280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:25,912 DEBUG Processing 698/868 atomic regions from SNP 209320 to 209920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,926 DEBUG Processing 670/913 atomic regions from SNP 200892 to 201492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,032 DEBUG Processing 477/657 atomic regions from SNP 142942 to 143542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,077 DEBUG Processing 540/1143 atomic regions from SNP 161979 to 162579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,144 DEBUG Processing 114/236 atomic regions from SNP 33980 to 34580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:26,170 DEBUG Processing 585/1035 atomic regions from SNP 175235 to 175835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,182 DEBUG Processing 671/913 atomic regions from SNP 201192 to 201792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,188 DEBUG Processing 699/868 atomic regions from SNP 209620 to 210220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,290 DEBUG Processing 478/657 atomic regions from SNP 143242 to 143842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,355 DEBUG Processing 541/1143 atomic regions from SNP 162279 to 162879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,382 DEBUG Processing 115/236 atomic regions from SNP 34280 to 34880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:26,441 DEBUG Processing 672/913 atomic regions from SNP 201492 to 202092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,453 DEBUG Processing 586/1035 atomic regions from SNP 175535 to 176135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,477 DEBUG Processing 700/868 atomic regions from SNP 209920 to 210520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,552 DEBUG Processing 479/657 atomic regions from SNP 143542 to 144142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,616 DEBUG Processing 116/236 atomic regions from SNP 34580 to 35180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:26,638 DEBUG Processing 542/1143 atomic regions from SNP 162579 to 163179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,702 DEBUG Processing 673/913 atomic regions from SNP 201792 to 202392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,739 DEBUG Processing 587/1035 atomic regions from SNP 175835 to 176435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,764 DEBUG Processing 701/868 atomic regions from SNP 210220 to 210820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,821 DEBUG Processing 480/657 atomic regions from SNP 143842 to 144442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,856 DEBUG Processing 117/236 atomic regions from SNP 34880 to 35480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:26,933 DEBUG Processing 543/1143 atomic regions from SNP 162879 to 163479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,973 DEBUG Processing 674/913 atomic regions from SNP 202092 to 202692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,034 DEBUG Processing 588/1035 atomic regions from SNP 176135 to 176735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,049 DEBUG Processing 702/868 atomic regions from SNP 210520 to 211120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,094 DEBUG Processing 118/236 atomic regions from SNP 35180 to 35780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:27,098 DEBUG Processing 481/657 atomic regions from SNP 144142 to 144742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,222 DEBUG Processing 544/1143 atomic regions from SNP 163179 to 163779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,231 DEBUG Processing 675/913 atomic regions from SNP 202392 to 202992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,329 DEBUG Processing 589/1035 atomic regions from SNP 176435 to 177035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,339 DEBUG Processing 703/868 atomic regions from SNP 210820 to 211420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,342 DEBUG Processing 119/236 atomic regions from SNP 35480 to 36080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:27,380 DEBUG Processing 482/657 atomic regions from SNP 144442 to 145042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,487 DEBUG Processing 676/913 atomic regions from SNP 202692 to 203292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,511 DEBUG Processing 545/1143 atomic regions from SNP 163479 to 164079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,587 DEBUG Processing 120/236 atomic regions from SNP 35780 to 36380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:27,617 DEBUG Processing 590/1035 atomic regions from SNP 176735 to 177335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,620 DEBUG Processing 704/868 atomic regions from SNP 211120 to 211720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,643 DEBUG Processing 483/657 atomic regions from SNP 144742 to 145342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,736 DEBUG Processing 677/913 atomic regions from SNP 202992 to 203592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,797 DEBUG Processing 546/1143 atomic regions from SNP 163779 to 164379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,830 DEBUG Processing 121/236 atomic regions from SNP 36080 to 36680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:27,903 DEBUG Processing 591/1035 atomic regions from SNP 177035 to 177635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,907 DEBUG Processing 705/868 atomic regions from SNP 211420 to 212020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,908 DEBUG Processing 484/657 atomic regions from SNP 145042 to 145642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,988 DEBUG Processing 678/913 atomic regions from SNP 203292 to 203892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,066 DEBUG Processing 122/236 atomic regions from SNP 36380 to 36980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:28,084 DEBUG Processing 547/1143 atomic regions from SNP 164079 to 164679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,176 DEBUG Processing 485/657 atomic regions from SNP 145342 to 145942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,191 DEBUG Processing 592/1035 atomic regions from SNP 177335 to 177935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,193 DEBUG Processing 706/868 atomic regions from SNP 211720 to 212320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,246 DEBUG Processing 679/913 atomic regions from SNP 203592 to 204192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,304 DEBUG Processing 123/236 atomic regions from SNP 36680 to 37280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:28,371 DEBUG Processing 548/1143 atomic regions from SNP 164379 to 164979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,430 DEBUG Processing 486/657 atomic regions from SNP 145642 to 146242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,472 DEBUG Processing 707/868 atomic regions from SNP 212020 to 212620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,474 DEBUG Processing 593/1035 atomic regions from SNP 177635 to 178235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,502 DEBUG Processing 680/913 atomic regions from SNP 203892 to 204492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,540 DEBUG Processing 124/236 atomic regions from SNP 36980 to 37580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:28,664 DEBUG Processing 549/1143 atomic regions from SNP 164679 to 165279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,687 DEBUG Processing 487/657 atomic regions from SNP 145942 to 146542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,758 DEBUG Processing 708/868 atomic regions from SNP 212320 to 212920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,762 DEBUG Processing 594/1035 atomic regions from SNP 177935 to 178535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,763 DEBUG Processing 681/913 atomic regions from SNP 204192 to 204792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,785 DEBUG Processing 125/236 atomic regions from SNP 37280 to 37880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:28,943 DEBUG Processing 488/657 atomic regions from SNP 146242 to 146842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,956 DEBUG Processing 550/1143 atomic regions from SNP 164979 to 165579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,028 DEBUG Processing 682/913 atomic regions from SNP 204492 to 205092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,038 DEBUG Processing 126/236 atomic regions from SNP 37580 to 38180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:29,039 DEBUG Processing 709/868 atomic regions from SNP 212620 to 213220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,054 DEBUG Processing 595/1035 atomic regions from SNP 178235 to 178835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,200 DEBUG Processing 489/657 atomic regions from SNP 146542 to 147142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,258 DEBUG Processing 551/1143 atomic regions from SNP 165279 to 165879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,286 DEBUG Processing 127/236 atomic regions from SNP 37880 to 38480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:29,292 DEBUG Processing 683/913 atomic regions from SNP 204792 to 205392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,310 DEBUG Processing 710/868 atomic regions from SNP 212920 to 213520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,340 DEBUG Processing 596/1035 atomic regions from SNP 178535 to 179135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,446 DEBUG Processing 490/657 atomic regions from SNP 146842 to 147442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,535 DEBUG Processing 128/236 atomic regions from SNP 38180 to 38780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:29,562 DEBUG Processing 552/1143 atomic regions from SNP 165579 to 166179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,569 DEBUG Processing 684/913 atomic regions from SNP 205092 to 205692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,576 DEBUG Processing 711/868 atomic regions from SNP 213220 to 213820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,629 DEBUG Processing 597/1035 atomic regions from SNP 178835 to 179435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,691 DEBUG Processing 491/657 atomic regions from SNP 147142 to 147742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,776 DEBUG Processing 129/236 atomic regions from SNP 38480 to 39080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:29,838 DEBUG Processing 712/868 atomic regions from SNP 213520 to 214120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,863 DEBUG Processing 553/1143 atomic regions from SNP 165879 to 166479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,863 DEBUG Processing 685/913 atomic regions from SNP 205392 to 205992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,925 DEBUG Processing 598/1035 atomic regions from SNP 179135 to 179735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,944 DEBUG Processing 492/657 atomic regions from SNP 147442 to 148042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,012 DEBUG Processing 130/236 atomic regions from SNP 38780 to 39380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:30,103 DEBUG Processing 713/868 atomic regions from SNP 213820 to 214420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,167 DEBUG Processing 686/913 atomic regions from SNP 205692 to 206292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,189 DEBUG Processing 554/1143 atomic regions from SNP 166179 to 166779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,217 DEBUG Processing 493/657 atomic regions from SNP 147742 to 148342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,244 DEBUG Processing 599/1035 atomic regions from SNP 179435 to 180035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,256 DEBUG Processing 131/236 atomic regions from SNP 39080 to 39680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:30,353 DEBUG Processing 714/868 atomic regions from SNP 214120 to 214720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,456 DEBUG Processing 687/913 atomic regions from SNP 205992 to 206592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,484 DEBUG Processing 494/657 atomic regions from SNP 148042 to 148642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,493 DEBUG Processing 555/1143 atomic regions from SNP 166479 to 167079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,511 DEBUG Processing 132/236 atomic regions from SNP 39380 to 39980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:30,565 DEBUG Processing 600/1035 atomic regions from SNP 179735 to 180335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,605 DEBUG Processing 715/868 atomic regions from SNP 214420 to 215020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,733 DEBUG Processing 688/913 atomic regions from SNP 206292 to 206892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,744 DEBUG Processing 495/657 atomic regions from SNP 148342 to 148942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,763 DEBUG Processing 133/236 atomic regions from SNP 39680 to 40280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:30,796 DEBUG Processing 556/1143 atomic regions from SNP 166779 to 167379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,865 DEBUG Processing 716/868 atomic regions from SNP 214720 to 215320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,873 DEBUG Processing 601/1035 atomic regions from SNP 180035 to 180635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,000 DEBUG Processing 496/657 atomic regions from SNP 148642 to 149242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,006 DEBUG Processing 689/913 atomic regions from SNP 206592 to 207192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,007 DEBUG Processing 134/236 atomic regions from SNP 39980 to 40580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:31,097 DEBUG Processing 557/1143 atomic regions from SNP 167079 to 167679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,129 DEBUG Processing 717/868 atomic regions from SNP 215020 to 215620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,185 DEBUG Processing 602/1035 atomic regions from SNP 180335 to 180935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,253 DEBUG Processing 135/236 atomic regions from SNP 40280 to 40880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:31,271 DEBUG Processing 497/657 atomic regions from SNP 148942 to 149542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,293 DEBUG Processing 690/913 atomic regions from SNP 206892 to 207492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,389 DEBUG Processing 718/868 atomic regions from SNP 215320 to 215920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,394 DEBUG Processing 558/1143 atomic regions from SNP 167379 to 167979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,489 DEBUG Processing 603/1035 atomic regions from SNP 180635 to 181235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,500 DEBUG Processing 136/236 atomic regions from SNP 40580 to 41180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:31,543 DEBUG Processing 498/657 atomic regions from SNP 149242 to 149842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,584 DEBUG Processing 691/913 atomic regions from SNP 207192 to 207792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,648 DEBUG Processing 719/868 atomic regions from SNP 215620 to 216220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,687 DEBUG Processing 559/1143 atomic regions from SNP 167679 to 168279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,744 DEBUG Processing 137/236 atomic regions from SNP 40880 to 41480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:31,795 DEBUG Processing 604/1035 atomic regions from SNP 180935 to 181535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,823 DEBUG Processing 499/657 atomic regions from SNP 149542 to 150142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,876 DEBUG Processing 692/913 atomic regions from SNP 207492 to 208092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,904 DEBUG Processing 720/868 atomic regions from SNP 215920 to 216520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,986 DEBUG Processing 560/1143 atomic regions from SNP 167979 to 168579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,992 DEBUG Processing 138/236 atomic regions from SNP 41180 to 41780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:32,103 DEBUG Processing 605/1035 atomic regions from SNP 181235 to 181835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,113 DEBUG Processing 500/657 atomic regions from SNP 149842 to 150442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,171 DEBUG Processing 693/913 atomic regions from SNP 207792 to 208392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,174 DEBUG Processing 721/868 atomic regions from SNP 216220 to 216820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,236 DEBUG Processing 139/236 atomic regions from SNP 41480 to 42080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:32,284 DEBUG Processing 561/1143 atomic regions from SNP 168279 to 168879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,394 DEBUG Processing 606/1035 atomic regions from SNP 181535 to 182135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,397 DEBUG Processing 501/657 atomic regions from SNP 150142 to 150742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,439 DEBUG Processing 722/868 atomic regions from SNP 216520 to 217120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,453 DEBUG Processing 694/913 atomic regions from SNP 208092 to 208692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,477 DEBUG Processing 140/236 atomic regions from SNP 41780 to 42380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:32,575 DEBUG Processing 562/1143 atomic regions from SNP 168579 to 169179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,676 DEBUG Processing 502/657 atomic regions from SNP 150442 to 151042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,683 DEBUG Processing 607/1035 atomic regions from SNP 181835 to 182435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,705 DEBUG Processing 723/868 atomic regions from SNP 216820 to 217420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,724 DEBUG Processing 141/236 atomic regions from SNP 42080 to 42680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:32,734 DEBUG Processing 695/913 atomic regions from SNP 208392 to 208992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,862 DEBUG Processing 563/1143 atomic regions from SNP 168879 to 169479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,955 DEBUG Processing 503/657 atomic regions from SNP 150742 to 151342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,968 DEBUG Processing 608/1035 atomic regions from SNP 182135 to 182735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,969 DEBUG Processing 724/868 atomic regions from SNP 217120 to 217720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,970 DEBUG Processing 142/236 atomic regions from SNP 42380 to 42980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:33,022 DEBUG Processing 696/913 atomic regions from SNP 208692 to 209292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,152 DEBUG Processing 564/1143 atomic regions from SNP 169179 to 169779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,217 DEBUG Processing 143/236 atomic regions from SNP 42680 to 43280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:33,223 DEBUG Processing 504/657 atomic regions from SNP 151042 to 151642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,232 DEBUG Processing 725/868 atomic regions from SNP 217420 to 218020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,258 DEBUG Processing 609/1035 atomic regions from SNP 182435 to 183035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,303 DEBUG Processing 697/913 atomic regions from SNP 208992 to 209592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,440 DEBUG Processing 565/1143 atomic regions from SNP 169479 to 170079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,460 DEBUG Processing 144/236 atomic regions from SNP 42980 to 43580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:33,489 DEBUG Processing 726/868 atomic regions from SNP 217720 to 218320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,492 DEBUG Processing 505/657 atomic regions from SNP 151342 to 151942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,543 DEBUG Processing 610/1035 atomic regions from SNP 182735 to 183335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,581 DEBUG Processing 698/913 atomic regions from SNP 209292 to 209892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,703 DEBUG Processing 145/236 atomic regions from SNP 43280 to 43880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:33,735 DEBUG Processing 566/1143 atomic regions from SNP 169779 to 170379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,749 DEBUG Processing 727/868 atomic regions from SNP 218020 to 218620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,771 DEBUG Processing 506/657 atomic regions from SNP 151642 to 152242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,826 DEBUG Processing 611/1035 atomic regions from SNP 183035 to 183635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,851 DEBUG Processing 699/913 atomic regions from SNP 209592 to 210192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,945 DEBUG Processing 146/236 atomic regions from SNP 43580 to 44180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:34,005 DEBUG Processing 728/868 atomic regions from SNP 218320 to 218920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,030 DEBUG Processing 567/1143 atomic regions from SNP 170079 to 170679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,044 DEBUG Processing 507/657 atomic regions from SNP 151942 to 152542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,106 DEBUG Processing 612/1035 atomic regions from SNP 183335 to 183935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,108 DEBUG Processing 700/913 atomic regions from SNP 209892 to 210492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,182 DEBUG Processing 147/236 atomic regions from SNP 43880 to 44480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:34,262 DEBUG Processing 729/868 atomic regions from SNP 218620 to 219220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,321 DEBUG Processing 508/657 atomic regions from SNP 152242 to 152842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,326 DEBUG Processing 568/1143 atomic regions from SNP 170379 to 170979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,373 DEBUG Processing 701/913 atomic regions from SNP 210192 to 210792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,396 DEBUG Processing 613/1035 atomic regions from SNP 183635 to 184235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,421 DEBUG Processing 148/236 atomic regions from SNP 44180 to 44780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:34,524 DEBUG Processing 730/868 atomic regions from SNP 218920 to 219520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,598 DEBUG Processing 509/657 atomic regions from SNP 152542 to 153142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,630 DEBUG Processing 569/1143 atomic regions from SNP 170679 to 171279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,645 DEBUG Processing 702/913 atomic regions from SNP 210492 to 211092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,669 DEBUG Processing 149/236 atomic regions from SNP 44480 to 45080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:34,688 DEBUG Processing 614/1035 atomic regions from SNP 183935 to 184535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,772 DEBUG Processing 731/868 atomic regions from SNP 219220 to 219820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,870 DEBUG Processing 510/657 atomic regions from SNP 152842 to 153442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,904 DEBUG Processing 703/913 atomic regions from SNP 210792 to 211392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,912 DEBUG Processing 150/236 atomic regions from SNP 44780 to 45380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:34,923 DEBUG Processing 570/1143 atomic regions from SNP 170979 to 171579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,973 DEBUG Processing 615/1035 atomic regions from SNP 184235 to 184835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,013 DEBUG Processing 732/868 atomic regions from SNP 219520 to 220120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,127 DEBUG Processing 511/657 atomic regions from SNP 153142 to 153742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,148 DEBUG Processing 151/236 atomic regions from SNP 45080 to 45680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:35,154 DEBUG Processing 704/913 atomic regions from SNP 211092 to 211692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,213 DEBUG Processing 571/1143 atomic regions from SNP 171279 to 171879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,256 DEBUG Processing 616/1035 atomic regions from SNP 184535 to 185135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,267 DEBUG Processing 733/868 atomic regions from SNP 219820 to 220420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,380 DEBUG Processing 152/236 atomic regions from SNP 45380 to 45980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:35,386 DEBUG Processing 512/657 atomic regions from SNP 153442 to 154042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,405 DEBUG Processing 705/913 atomic regions from SNP 211392 to 211992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,505 DEBUG Processing 572/1143 atomic regions from SNP 171579 to 172179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,530 DEBUG Processing 734/868 atomic regions from SNP 220120 to 220720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,538 DEBUG Processing 617/1035 atomic regions from SNP 184835 to 185435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,618 DEBUG Processing 153/236 atomic regions from SNP 45680 to 46280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:35,648 DEBUG Processing 513/657 atomic regions from SNP 153742 to 154342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,656 DEBUG Processing 706/913 atomic regions from SNP 211692 to 212292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,791 DEBUG Processing 573/1143 atomic regions from SNP 171879 to 172479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,796 DEBUG Processing 735/868 atomic regions from SNP 220420 to 221020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,818 DEBUG Processing 618/1035 atomic regions from SNP 185135 to 185735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,859 DEBUG Processing 154/236 atomic regions from SNP 45980 to 46580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:35,911 DEBUG Processing 707/913 atomic regions from SNP 211992 to 212592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,919 DEBUG Processing 514/657 atomic regions from SNP 154042 to 154642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,063 DEBUG Processing 736/868 atomic regions from SNP 220720 to 221320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,078 DEBUG Processing 574/1143 atomic regions from SNP 172179 to 172779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,096 DEBUG Processing 155/236 atomic regions from SNP 46280 to 46880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:36,098 DEBUG Processing 619/1035 atomic regions from SNP 185435 to 186035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,164 DEBUG Processing 708/913 atomic regions from SNP 212292 to 212892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,190 DEBUG Processing 515/657 atomic regions from SNP 154342 to 154942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,331 DEBUG Processing 156/236 atomic regions from SNP 46580 to 47180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:36,333 DEBUG Processing 737/868 atomic regions from SNP 221020 to 221620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,364 DEBUG Processing 575/1143 atomic regions from SNP 172479 to 173079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,375 DEBUG Processing 620/1035 atomic regions from SNP 185735 to 186335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,413 DEBUG Processing 709/913 atomic regions from SNP 212592 to 213192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,466 DEBUG Processing 516/657 atomic regions from SNP 154642 to 155242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,561 DEBUG Processing 157/236 atomic regions from SNP 46880 to 47480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:36,598 DEBUG Processing 738/868 atomic regions from SNP 221320 to 221920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,648 DEBUG Processing 576/1143 atomic regions from SNP 172779 to 173379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,651 DEBUG Processing 621/1035 atomic regions from SNP 186035 to 186635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,663 DEBUG Processing 710/913 atomic regions from SNP 212892 to 213492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,731 DEBUG Processing 517/657 atomic regions from SNP 154942 to 155542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,792 DEBUG Processing 158/236 atomic regions from SNP 47180 to 47780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:36,850 DEBUG Processing 739/868 atomic regions from SNP 221620 to 222220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,915 DEBUG Processing 711/913 atomic regions from SNP 213192 to 213792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,926 DEBUG Processing 622/1035 atomic regions from SNP 186335 to 186935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,934 DEBUG Processing 577/1143 atomic regions from SNP 173079 to 173679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,005 DEBUG Processing 518/657 atomic regions from SNP 155242 to 155842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,022 DEBUG Processing 159/236 atomic regions from SNP 47480 to 48080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:37,095 DEBUG Processing 740/868 atomic regions from SNP 221920 to 222520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,161 DEBUG Processing 712/913 atomic regions from SNP 213492 to 214092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,199 DEBUG Processing 623/1035 atomic regions from SNP 186635 to 187235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,216 DEBUG Processing 578/1143 atomic regions from SNP 173379 to 173979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,254 DEBUG Processing 160/236 atomic regions from SNP 47780 to 48380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:37,272 DEBUG Processing 519/657 atomic regions from SNP 155542 to 156142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,345 DEBUG Processing 741/868 atomic regions from SNP 222220 to 222820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,407 DEBUG Processing 713/913 atomic regions from SNP 213792 to 214392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,470 DEBUG Processing 624/1035 atomic regions from SNP 186935 to 187535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,488 DEBUG Processing 161/236 atomic regions from SNP 48080 to 48680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:37,500 DEBUG Processing 579/1143 atomic regions from SNP 173679 to 174279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,543 DEBUG Processing 520/657 atomic regions from SNP 155842 to 156442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,595 DEBUG Processing 742/868 atomic regions from SNP 222520 to 223120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,656 DEBUG Processing 714/913 atomic regions from SNP 214092 to 214692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,721 DEBUG Processing 162/236 atomic regions from SNP 48380 to 48980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:37,740 DEBUG Processing 625/1035 atomic regions from SNP 187235 to 187835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,793 DEBUG Processing 580/1143 atomic regions from SNP 173979 to 174579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,821 DEBUG Processing 521/657 atomic regions from SNP 156142 to 156742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,847 DEBUG Processing 743/868 atomic regions from SNP 222820 to 223420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,905 DEBUG Processing 715/913 atomic regions from SNP 214392 to 214992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,947 DEBUG Processing 163/236 atomic regions from SNP 48680 to 49280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:38,009 DEBUG Processing 626/1035 atomic regions from SNP 187535 to 188135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,080 DEBUG Processing 581/1143 atomic regions from SNP 174279 to 174879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,086 DEBUG Processing 522/657 atomic regions from SNP 156442 to 157042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,096 DEBUG Processing 744/868 atomic regions from SNP 223120 to 223720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,161 DEBUG Processing 716/913 atomic regions from SNP 214692 to 215292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,184 DEBUG Processing 164/236 atomic regions from SNP 48980 to 49580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:38,285 DEBUG Processing 627/1035 atomic regions from SNP 187835 to 188435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,350 DEBUG Processing 745/868 atomic regions from SNP 223420 to 224020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,359 DEBUG Processing 523/657 atomic regions from SNP 156742 to 157342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,373 DEBUG Processing 582/1143 atomic regions from SNP 174579 to 175179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,417 DEBUG Processing 717/913 atomic regions from SNP 214992 to 215592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,421 DEBUG Processing 165/236 atomic regions from SNP 49280 to 49880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:38,560 DEBUG Processing 628/1035 atomic regions from SNP 188135 to 188735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,609 DEBUG Processing 746/868 atomic regions from SNP 223720 to 224320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,647 DEBUG Processing 524/657 atomic regions from SNP 157042 to 157642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,664 DEBUG Processing 166/236 atomic regions from SNP 49580 to 50180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:38,669 DEBUG Processing 583/1143 atomic regions from SNP 174879 to 175479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,687 DEBUG Processing 718/913 atomic regions from SNP 215292 to 215892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,829 DEBUG Processing 629/1035 atomic regions from SNP 188435 to 189035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,859 DEBUG Processing 747/868 atomic regions from SNP 224020 to 224620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,904 DEBUG Processing 167/236 atomic regions from SNP 49880 to 50480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:38,927 DEBUG Processing 525/657 atomic regions from SNP 157342 to 157942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,958 DEBUG Processing 719/913 atomic regions from SNP 215592 to 216192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,966 DEBUG Processing 584/1143 atomic regions from SNP 175179 to 175779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,097 DEBUG Processing 630/1035 atomic regions from SNP 188735 to 189335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,107 DEBUG Processing 748/868 atomic regions from SNP 224320 to 224920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,143 DEBUG Processing 168/236 atomic regions from SNP 50180 to 50780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:39,205 DEBUG Processing 526/657 atomic regions from SNP 157642 to 158242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,226 DEBUG Processing 720/913 atomic regions from SNP 215892 to 216492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,258 DEBUG Processing 585/1143 atomic regions from SNP 175479 to 176079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,361 DEBUG Processing 749/868 atomic regions from SNP 224620 to 225220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,375 DEBUG Processing 631/1035 atomic regions from SNP 189035 to 189635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,384 DEBUG Processing 169/236 atomic regions from SNP 50480 to 51080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:39,487 DEBUG Processing 527/657 atomic regions from SNP 157942 to 158542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,503 DEBUG Processing 721/913 atomic regions from SNP 216192 to 216792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,561 DEBUG Processing 586/1143 atomic regions from SNP 175779 to 176379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,619 DEBUG Processing 750/868 atomic regions from SNP 224920 to 225520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,620 DEBUG Processing 170/236 atomic regions from SNP 50780 to 51380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:39,658 DEBUG Processing 632/1035 atomic regions from SNP 189335 to 189935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,758 DEBUG Processing 528/657 atomic regions from SNP 158242 to 158842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,783 DEBUG Processing 722/913 atomic regions from SNP 216492 to 217092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,862 DEBUG Processing 587/1143 atomic regions from SNP 176079 to 176679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,868 DEBUG Processing 171/236 atomic regions from SNP 51080 to 51680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:39,884 DEBUG Processing 751/868 atomic regions from SNP 225220 to 225820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,945 DEBUG Processing 633/1035 atomic regions from SNP 189635 to 190235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,042 DEBUG Processing 529/657 atomic regions from SNP 158542 to 159142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,076 DEBUG Processing 723/913 atomic regions from SNP 216792 to 217392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,116 DEBUG Processing 172/236 atomic regions from SNP 51380 to 51980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:40,149 DEBUG Processing 752/868 atomic regions from SNP 225520 to 226120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,165 DEBUG Processing 588/1143 atomic regions from SNP 176379 to 176979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,231 DEBUG Processing 634/1035 atomic regions from SNP 189935 to 190535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,320 DEBUG Processing 530/657 atomic regions from SNP 158842 to 159442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,361 DEBUG Processing 724/913 atomic regions from SNP 217092 to 217692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,367 DEBUG Processing 173/236 atomic regions from SNP 51680 to 52280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:40,416 DEBUG Processing 753/868 atomic regions from SNP 225820 to 226420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,466 DEBUG Processing 589/1143 atomic regions from SNP 176679 to 177279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,513 DEBUG Processing 635/1035 atomic regions from SNP 190235 to 190835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,605 DEBUG Processing 531/657 atomic regions from SNP 159142 to 159742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,614 DEBUG Processing 174/236 atomic regions from SNP 51980 to 52580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:40,651 DEBUG Processing 725/913 atomic regions from SNP 217392 to 217992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,685 DEBUG Processing 754/868 atomic regions from SNP 226120 to 226720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,768 DEBUG Processing 590/1143 atomic regions from SNP 176979 to 177579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,801 DEBUG Processing 636/1035 atomic regions from SNP 190535 to 191135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,863 DEBUG Processing 175/236 atomic regions from SNP 52280 to 52880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:40,890 DEBUG Processing 532/657 atomic regions from SNP 159442 to 160042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,948 DEBUG Processing 726/913 atomic regions from SNP 217692 to 218292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,953 DEBUG Processing 755/868 atomic regions from SNP 226420 to 227020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,069 DEBUG Processing 591/1143 atomic regions from SNP 177279 to 177879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,094 DEBUG Processing 637/1035 atomic regions from SNP 190835 to 191435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,111 DEBUG Processing 176/236 atomic regions from SNP 52580 to 53180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:41,180 DEBUG Processing 533/657 atomic regions from SNP 159742 to 160342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,213 DEBUG Processing 756/868 atomic regions from SNP 226720 to 227320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,217 DEBUG Processing 727/913 atomic regions from SNP 217992 to 218592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,376 DEBUG Processing 177/236 atomic regions from SNP 52880 to 53480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:41,392 DEBUG Processing 592/1143 atomic regions from SNP 177579 to 178179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,399 DEBUG Processing 638/1035 atomic regions from SNP 191135 to 191735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,476 DEBUG Processing 534/657 atomic regions from SNP 160042 to 160642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,483 DEBUG Processing 757/868 atomic regions from SNP 227020 to 227620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,486 DEBUG Processing 728/913 atomic regions from SNP 218292 to 218892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,619 DEBUG Processing 178/236 atomic regions from SNP 53180 to 53780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:41,687 DEBUG Processing 639/1035 atomic regions from SNP 191435 to 192035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,691 DEBUG Processing 593/1143 atomic regions from SNP 177879 to 178479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,748 DEBUG Processing 758/868 atomic regions from SNP 227320 to 227920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,751 DEBUG Processing 729/913 atomic regions from SNP 218592 to 219192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,762 DEBUG Processing 535/657 atomic regions from SNP 160342 to 160942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,859 DEBUG Processing 179/236 atomic regions from SNP 53480 to 54080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:41,976 DEBUG Processing 640/1035 atomic regions from SNP 191735 to 192335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,993 DEBUG Processing 594/1143 atomic regions from SNP 178179 to 178779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,014 DEBUG Processing 759/868 atomic regions from SNP 227620 to 228220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,021 DEBUG Processing 730/913 atomic regions from SNP 218892 to 219492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,050 DEBUG Processing 536/657 atomic regions from SNP 160642 to 161242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,099 DEBUG Processing 180/236 atomic regions from SNP 53780 to 54380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:42,259 DEBUG Processing 641/1035 atomic regions from SNP 192035 to 192635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,279 DEBUG Processing 760/868 atomic regions from SNP 227920 to 228520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,288 DEBUG Processing 731/913 atomic regions from SNP 219192 to 219792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,291 DEBUG Processing 595/1143 atomic regions from SNP 178479 to 179079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,340 DEBUG Processing 537/657 atomic regions from SNP 160942 to 161542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,346 DEBUG Processing 181/236 atomic regions from SNP 54080 to 54680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:42,541 DEBUG Processing 761/868 atomic regions from SNP 228220 to 228820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,544 DEBUG Processing 642/1035 atomic regions from SNP 192335 to 192935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,556 DEBUG Processing 732/913 atomic regions from SNP 219492 to 220092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,592 DEBUG Processing 596/1143 atomic regions from SNP 178779 to 179379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,598 DEBUG Processing 182/236 atomic regions from SNP 54380 to 54980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:42,629 DEBUG Processing 538/657 atomic regions from SNP 161242 to 161842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,811 DEBUG Processing 762/868 atomic regions from SNP 228520 to 229120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,822 DEBUG Processing 733/913 atomic regions from SNP 219792 to 220392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,834 DEBUG Processing 643/1035 atomic regions from SNP 192635 to 193235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,851 DEBUG Processing 183/236 atomic regions from SNP 54680 to 55280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:42,895 DEBUG Processing 597/1143 atomic regions from SNP 179079 to 179679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,916 DEBUG Processing 539/657 atomic regions from SNP 161542 to 162142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,090 DEBUG Processing 734/913 atomic regions from SNP 220092 to 220692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,091 DEBUG Processing 763/868 atomic regions from SNP 228820 to 229420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,115 DEBUG Processing 184/236 atomic regions from SNP 54980 to 55580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:43,120 DEBUG Processing 644/1035 atomic regions from SNP 192935 to 193535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,206 DEBUG Processing 598/1143 atomic regions from SNP 179379 to 179979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,212 DEBUG Processing 540/657 atomic regions from SNP 161842 to 162442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,362 DEBUG Processing 185/236 atomic regions from SNP 55280 to 55880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:43,371 DEBUG Processing 764/868 atomic regions from SNP 229120 to 229720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,373 DEBUG Processing 735/913 atomic regions from SNP 220392 to 220992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,408 DEBUG Processing 645/1035 atomic regions from SNP 193235 to 193835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,489 DEBUG Processing 541/657 atomic regions from SNP 162142 to 162742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,500 DEBUG Processing 599/1143 atomic regions from SNP 179679 to 180279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,608 DEBUG Processing 186/236 atomic regions from SNP 55580 to 56180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:43,674 DEBUG Processing 765/868 atomic regions from SNP 229420 to 230020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,679 DEBUG Processing 736/913 atomic regions from SNP 220692 to 221292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,711 DEBUG Processing 646/1035 atomic regions from SNP 193535 to 194135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,785 DEBUG Processing 542/657 atomic regions from SNP 162442 to 163042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,811 DEBUG Processing 600/1143 atomic regions from SNP 179979 to 180579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,854 DEBUG Processing 187/236 atomic regions from SNP 55880 to 56480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:43,954 DEBUG Processing 766/868 atomic regions from SNP 229720 to 230320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,958 DEBUG Processing 737/913 atomic regions from SNP 220992 to 221592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,993 DEBUG Processing 647/1035 atomic regions from SNP 193835 to 194435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,065 DEBUG Processing 543/657 atomic regions from SNP 162742 to 163342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,099 DEBUG Processing 188/236 atomic regions from SNP 56180 to 56780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:44,110 DEBUG Processing 601/1143 atomic regions from SNP 180279 to 180879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,232 DEBUG Processing 767/868 atomic regions from SNP 230020 to 230620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,235 DEBUG Processing 738/913 atomic regions from SNP 221292 to 221892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,274 DEBUG Processing 648/1035 atomic regions from SNP 194135 to 194735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,343 DEBUG Processing 189/236 atomic regions from SNP 56480 to 57080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:44,348 DEBUG Processing 544/657 atomic regions from SNP 163042 to 163642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,407 DEBUG Processing 602/1143 atomic regions from SNP 180579 to 181179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,507 DEBUG Processing 739/913 atomic regions from SNP 221592 to 222192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,516 DEBUG Processing 768/868 atomic regions from SNP 230320 to 230920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,556 DEBUG Processing 649/1035 atomic regions from SNP 194435 to 195035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,588 DEBUG Processing 190/236 atomic regions from SNP 56780 to 57380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:44,627 DEBUG Processing 545/657 atomic regions from SNP 163342 to 163942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,712 DEBUG Processing 603/1143 atomic regions from SNP 180879 to 181479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,777 DEBUG Processing 740/913 atomic regions from SNP 221892 to 222492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,804 DEBUG Processing 769/868 atomic regions from SNP 230620 to 231220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,831 DEBUG Processing 191/236 atomic regions from SNP 57080 to 57680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:44,844 DEBUG Processing 650/1035 atomic regions from SNP 194735 to 195335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,890 DEBUG Processing 546/657 atomic regions from SNP 163642 to 164242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,011 DEBUG Processing 604/1143 atomic regions from SNP 181179 to 181779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,044 DEBUG Processing 741/913 atomic regions from SNP 222192 to 222792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,073 DEBUG Processing 192/236 atomic regions from SNP 57380 to 57980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:45,081 DEBUG Processing 770/868 atomic regions from SNP 230920 to 231520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,135 DEBUG Processing 651/1035 atomic regions from SNP 195035 to 195635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,154 DEBUG Processing 547/657 atomic regions from SNP 163942 to 164542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,305 DEBUG Processing 605/1143 atomic regions from SNP 181479 to 182079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,310 DEBUG Processing 742/913 atomic regions from SNP 222492 to 223092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,327 DEBUG Processing 193/236 atomic regions from SNP 57680 to 58280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:45,362 DEBUG Processing 771/868 atomic regions from SNP 231220 to 231820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,423 DEBUG Processing 652/1035 atomic regions from SNP 195335 to 195935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,432 DEBUG Processing 548/657 atomic regions from SNP 164242 to 164842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,592 DEBUG Processing 194/236 atomic regions from SNP 57980 to 58580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:45,615 DEBUG Processing 743/913 atomic regions from SNP 222792 to 223392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,635 DEBUG Processing 606/1143 atomic regions from SNP 181779 to 182379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,663 DEBUG Processing 772/868 atomic regions from SNP 231520 to 232120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,723 DEBUG Processing 549/657 atomic regions from SNP 164542 to 165142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,728 DEBUG Processing 653/1035 atomic regions from SNP 195635 to 196235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,832 DEBUG Processing 195/236 atomic regions from SNP 58280 to 58880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:45,885 DEBUG Processing 744/913 atomic regions from SNP 223092 to 223692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,945 DEBUG Processing 773/868 atomic regions from SNP 231820 to 232420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,957 DEBUG Processing 607/1143 atomic regions from SNP 182079 to 182679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,001 DEBUG Processing 550/657 atomic regions from SNP 164842 to 165442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,015 DEBUG Processing 654/1035 atomic regions from SNP 195935 to 196535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,079 DEBUG Processing 196/236 atomic regions from SNP 58580 to 59180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:46,149 DEBUG Processing 745/913 atomic regions from SNP 223392 to 223992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,235 DEBUG Processing 774/868 atomic regions from SNP 232120 to 232720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,277 DEBUG Processing 608/1143 atomic regions from SNP 182379 to 182979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,283 DEBUG Processing 551/657 atomic regions from SNP 165142 to 165742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,310 DEBUG Processing 655/1035 atomic regions from SNP 196235 to 196835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,329 DEBUG Processing 197/236 atomic regions from SNP 58880 to 59480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:46,412 DEBUG Processing 746/913 atomic regions from SNP 223692 to 224292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,523 DEBUG Processing 775/868 atomic regions from SNP 232420 to 233020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,573 DEBUG Processing 552/657 atomic regions from SNP 165442 to 166042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,588 DEBUG Processing 198/236 atomic regions from SNP 59180 to 59780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:46,591 DEBUG Processing 609/1143 atomic regions from SNP 182679 to 183279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,612 DEBUG Processing 656/1035 atomic regions from SNP 196535 to 197135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,683 DEBUG Processing 747/913 atomic regions from SNP 223992 to 224592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,788 DEBUG Processing 776/868 atomic regions from SNP 232720 to 233320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,839 DEBUG Processing 199/236 atomic regions from SNP 59480 to 60080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:46,856 DEBUG Processing 553/657 atomic regions from SNP 165742 to 166342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,898 DEBUG Processing 610/1143 atomic regions from SNP 182979 to 183579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,907 DEBUG Processing 657/1035 atomic regions from SNP 196835 to 197435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,969 DEBUG Processing 748/913 atomic regions from SNP 224292 to 224892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,040 DEBUG Processing 777/868 atomic regions from SNP 233020 to 233620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,075 DEBUG Processing 200/236 atomic regions from SNP 59780 to 60380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:47,132 DEBUG Processing 554/657 atomic regions from SNP 166042 to 166642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,194 DEBUG Processing 658/1035 atomic regions from SNP 197135 to 197735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,210 DEBUG Processing 611/1143 atomic regions from SNP 183279 to 183879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,247 DEBUG Processing 749/913 atomic regions from SNP 224592 to 225192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,301 DEBUG Processing 778/868 atomic regions from SNP 233320 to 233920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,312 DEBUG Processing 201/236 atomic regions from SNP 60080 to 60680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:47,409 DEBUG Processing 555/657 atomic regions from SNP 166342 to 166942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,501 DEBUG Processing 659/1035 atomic regions from SNP 197435 to 198035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,537 DEBUG Processing 750/913 atomic regions from SNP 224892 to 225492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,540 DEBUG Processing 612/1143 atomic regions from SNP 183579 to 184179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,561 DEBUG Processing 202/236 atomic regions from SNP 60380 to 60980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:47,580 DEBUG Processing 779/868 atomic regions from SNP 233620 to 234220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,666 DEBUG Processing 556/657 atomic regions from SNP 166642 to 167242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,782 DEBUG Processing 660/1035 atomic regions from SNP 197735 to 198335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,805 DEBUG Processing 751/913 atomic regions from SNP 225192 to 225792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,808 DEBUG Processing 203/236 atomic regions from SNP 60680 to 61280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:47,839 DEBUG Processing 613/1143 atomic regions from SNP 183879 to 184479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,864 DEBUG Processing 780/868 atomic regions from SNP 233920 to 234520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,933 DEBUG Processing 557/657 atomic regions from SNP 166942 to 167542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,059 DEBUG Processing 204/236 atomic regions from SNP 60980 to 61580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:48,069 DEBUG Processing 661/1035 atomic regions from SNP 198035 to 198635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,071 DEBUG Processing 752/913 atomic regions from SNP 225492 to 226092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,144 DEBUG Processing 614/1143 atomic regions from SNP 184179 to 184779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,152 DEBUG Processing 781/868 atomic regions from SNP 234220 to 234820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,214 DEBUG Processing 558/657 atomic regions from SNP 167242 to 167842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,303 DEBUG Processing 205/236 atomic regions from SNP 61280 to 61880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:48,330 DEBUG Processing 753/913 atomic regions from SNP 225792 to 226392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,355 DEBUG Processing 662/1035 atomic regions from SNP 198335 to 198935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,441 DEBUG Processing 782/868 atomic regions from SNP 234520 to 235120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,446 DEBUG Processing 615/1143 atomic regions from SNP 184479 to 185079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,488 DEBUG Processing 559/657 atomic regions from SNP 167542 to 168142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,542 DEBUG Processing 206/236 atomic regions from SNP 61580 to 62180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:48,588 DEBUG Processing 754/913 atomic regions from SNP 226092 to 226692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,639 DEBUG Processing 663/1035 atomic regions from SNP 198635 to 199235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,727 DEBUG Processing 783/868 atomic regions from SNP 234820 to 235420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,745 DEBUG Processing 616/1143 atomic regions from SNP 184779 to 185379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,762 DEBUG Processing 560/657 atomic regions from SNP 167842 to 168442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,789 DEBUG Processing 207/236 atomic regions from SNP 61880 to 62480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:48,846 DEBUG Processing 755/913 atomic regions from SNP 226392 to 226992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,922 DEBUG Processing 664/1035 atomic regions from SNP 198935 to 199535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,026 DEBUG Processing 784/868 atomic regions from SNP 235120 to 235720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,047 DEBUG Processing 208/236 atomic regions from SNP 62180 to 62780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:49,050 DEBUG Processing 561/657 atomic regions from SNP 168142 to 168742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,055 DEBUG Processing 617/1143 atomic regions from SNP 185079 to 185679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,129 DEBUG Processing 756/913 atomic regions from SNP 226692 to 227292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,228 DEBUG Processing 665/1035 atomic regions from SNP 199235 to 199835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,319 DEBUG Processing 209/236 atomic regions from SNP 62480 to 63080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:49,340 DEBUG Processing 785/868 atomic regions from SNP 235420 to 236020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,352 DEBUG Processing 562/657 atomic regions from SNP 168442 to 169042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,380 DEBUG Processing 618/1143 atomic regions from SNP 185379 to 185979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,415 DEBUG Processing 757/913 atomic regions from SNP 226992 to 227592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,508 DEBUG Processing 666/1035 atomic regions from SNP 199535 to 200135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,566 DEBUG Processing 210/236 atomic regions from SNP 62780 to 63380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:49,609 DEBUG Processing 786/868 atomic regions from SNP 235720 to 236320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,643 DEBUG Processing 563/657 atomic regions from SNP 168742 to 169342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,680 DEBUG Processing 619/1143 atomic regions from SNP 185679 to 186279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,682 DEBUG Processing 758/913 atomic regions from SNP 227292 to 227892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,788 DEBUG Processing 667/1035 atomic regions from SNP 199835 to 200435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,804 DEBUG Processing 211/236 atomic regions from SNP 63080 to 63680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:49,893 DEBUG Processing 787/868 atomic regions from SNP 236020 to 236620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,932 DEBUG Processing 564/657 atomic regions from SNP 169042 to 169642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,953 DEBUG Processing 759/913 atomic regions from SNP 227592 to 228192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,985 DEBUG Processing 620/1143 atomic regions from SNP 185979 to 186579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,055 DEBUG Processing 212/236 atomic regions from SNP 63380 to 63980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:50,082 DEBUG Processing 668/1035 atomic regions from SNP 200135 to 200735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,160 DEBUG Processing 788/868 atomic regions from SNP 236320 to 236920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,209 DEBUG Processing 565/657 atomic regions from SNP 169342 to 169942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,213 DEBUG Processing 760/913 atomic regions from SNP 227892 to 228492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,282 DEBUG Processing 621/1143 atomic regions from SNP 186279 to 186879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,300 DEBUG Processing 213/236 atomic regions from SNP 63680 to 64280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:50,372 DEBUG Processing 669/1035 atomic regions from SNP 200435 to 201035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,427 DEBUG Processing 789/868 atomic regions from SNP 236620 to 237220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,482 DEBUG Processing 761/913 atomic regions from SNP 228192 to 228792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,500 DEBUG Processing 566/657 atomic regions from SNP 169642 to 170242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,562 DEBUG Processing 214/236 atomic regions from SNP 63980 to 64580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:50,597 DEBUG Processing 622/1143 atomic regions from SNP 186579 to 187179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,677 DEBUG Processing 670/1035 atomic regions from SNP 200735 to 201335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,706 DEBUG Processing 790/868 atomic regions from SNP 236920 to 237520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,764 DEBUG Processing 762/913 atomic regions from SNP 228492 to 229092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,800 DEBUG Processing 567/657 atomic regions from SNP 169942 to 170542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,819 DEBUG Processing 215/236 atomic regions from SNP 64280 to 64880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:50,904 DEBUG Processing 623/1143 atomic regions from SNP 186879 to 187479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,968 DEBUG Processing 671/1035 atomic regions from SNP 201035 to 201635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,974 DEBUG Processing 791/868 atomic regions from SNP 237220 to 237820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:51,036 DEBUG Processing 763/913 atomic regions from SNP 228792 to 229392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,077 DEBUG Processing 216/236 atomic regions from SNP 64580 to 65180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:51,082 DEBUG Processing 568/657 atomic regions from SNP 170242 to 170842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,207 DEBUG Processing 624/1143 atomic regions from SNP 187179 to 187779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,246 DEBUG Processing 792/868 atomic regions from SNP 237520 to 238120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:51,261 DEBUG Processing 672/1035 atomic regions from SNP 201335 to 201935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,309 DEBUG Processing 764/913 atomic regions from SNP 229092 to 229692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,329 DEBUG Processing 217/236 atomic regions from SNP 64880 to 65480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:51,348 DEBUG Processing 569/657 atomic regions from SNP 170542 to 171142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,507 DEBUG Processing 625/1143 atomic regions from SNP 187479 to 188079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,532 DEBUG Processing 793/868 atomic regions from SNP 237820 to 238420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:51,557 DEBUG Processing 673/1035 atomic regions from SNP 201635 to 202235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,582 DEBUG Processing 765/913 atomic regions from SNP 229392 to 229992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,588 DEBUG Processing 218/236 atomic regions from SNP 65180 to 65780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:51,613 DEBUG Processing 570/657 atomic regions from SNP 170842 to 171442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,808 DEBUG Processing 626/1143 atomic regions from SNP 187779 to 188379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,834 DEBUG Processing 794/868 atomic regions from SNP 238120 to 238720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:51,848 DEBUG Processing 219/236 atomic regions from SNP 65480 to 66080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:51,854 DEBUG Processing 674/1035 atomic regions from SNP 201935 to 202535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,860 DEBUG Processing 766/913 atomic regions from SNP 229692 to 230292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,883 DEBUG Processing 571/657 atomic regions from SNP 171142 to 171742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,105 DEBUG Processing 220/236 atomic regions from SNP 65780 to 66380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:52,106 DEBUG Processing 627/1143 atomic regions from SNP 188079 to 188679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,131 DEBUG Processing 795/868 atomic regions from SNP 238420 to 239020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:52,134 DEBUG Processing 767/913 atomic regions from SNP 229992 to 230592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,155 DEBUG Processing 675/1035 atomic regions from SNP 202235 to 202835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,168 DEBUG Processing 572/657 atomic regions from SNP 171442 to 172042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,359 DEBUG Processing 221/236 atomic regions from SNP 66080 to 66680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:52,410 DEBUG Processing 768/913 atomic regions from SNP 230292 to 230892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,431 DEBUG Processing 796/868 atomic regions from SNP 238720 to 239320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:52,436 DEBUG Processing 628/1143 atomic regions from SNP 188379 to 188979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,457 DEBUG Processing 676/1035 atomic regions from SNP 202535 to 203135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,466 DEBUG Processing 573/657 atomic regions from SNP 171742 to 172342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,594 DEBUG Processing 222/236 atomic regions from SNP 66380 to 66980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:52,683 DEBUG Processing 769/913 atomic regions from SNP 230592 to 231192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,733 DEBUG Processing 797/868 atomic regions from SNP 239020 to 239620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:52,750 DEBUG Processing 629/1143 atomic regions from SNP 188679 to 189279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,756 DEBUG Processing 677/1035 atomic regions from SNP 202835 to 203435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,758 DEBUG Processing 574/657 atomic regions from SNP 172042 to 172642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,835 DEBUG Processing 223/236 atomic regions from SNP 66680 to 67280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:52,973 DEBUG Processing 770/913 atomic regions from SNP 230892 to 231492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,028 DEBUG Processing 798/868 atomic regions from SNP 239320 to 239920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:53,054 DEBUG Processing 678/1035 atomic regions from SNP 203135 to 203735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,056 DEBUG Processing 575/657 atomic regions from SNP 172342 to 172942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,063 DEBUG Processing 630/1143 atomic regions from SNP 188979 to 189579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,083 DEBUG Processing 224/236 atomic regions from SNP 66980 to 67580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:53,259 DEBUG Processing 771/913 atomic regions from SNP 231192 to 231792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,322 DEBUG Processing 799/868 atomic regions from SNP 239620 to 240220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:53,337 DEBUG Processing 225/236 atomic regions from SNP 67280 to 67880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:53,345 DEBUG Processing 576/657 atomic regions from SNP 172642 to 173242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,354 DEBUG Processing 679/1035 atomic regions from SNP 203435 to 204035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,377 DEBUG Processing 631/1143 atomic regions from SNP 189279 to 189879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,546 DEBUG Processing 772/913 atomic regions from SNP 231492 to 232092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,588 DEBUG Processing 226/236 atomic regions from SNP 67580 to 68180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:53,612 DEBUG Processing 800/868 atomic regions from SNP 239920 to 240520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:53,637 DEBUG Processing 577/657 atomic regions from SNP 172942 to 173542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,651 DEBUG Processing 680/1035 atomic regions from SNP 203735 to 204335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,689 DEBUG Processing 632/1143 atomic regions from SNP 189579 to 190179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,829 DEBUG Processing 773/913 atomic regions from SNP 231792 to 232392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,835 DEBUG Processing 227/236 atomic regions from SNP 67880 to 68480 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:53,900 DEBUG Processing 801/868 atomic regions from SNP 240220 to 240820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:53,926 DEBUG Processing 578/657 atomic regions from SNP 173242 to 173842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,947 DEBUG Processing 681/1035 atomic regions from SNP 204035 to 204635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,999 DEBUG Processing 633/1143 atomic regions from SNP 189879 to 190479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,072 DEBUG Processing 228/236 atomic regions from SNP 68180 to 68780 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:54,098 DEBUG Processing 774/913 atomic regions from SNP 232092 to 232692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,192 DEBUG Processing 802/868 atomic regions from SNP 240520 to 241120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:54,207 DEBUG Processing 579/657 atomic regions from SNP 173542 to 174142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:54,243 DEBUG Processing 682/1035 atomic regions from SNP 204335 to 204935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,305 DEBUG Processing 634/1143 atomic regions from SNP 190179 to 190779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,321 DEBUG Processing 229/236 atomic regions from SNP 68480 to 69080 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:54,374 DEBUG Processing 775/913 atomic regions from SNP 232392 to 232992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,486 DEBUG Processing 803/868 atomic regions from SNP 240820 to 241420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:54,487 DEBUG Processing 580/657 atomic regions from SNP 173842 to 174442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:54,532 DEBUG Processing 683/1035 atomic regions from SNP 204635 to 205235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,571 DEBUG Processing 230/236 atomic regions from SNP 68780 to 69380 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:54,611 DEBUG Processing 635/1143 atomic regions from SNP 190479 to 191079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,636 DEBUG Processing 776/913 atomic regions from SNP 232692 to 233292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,756 DEBUG Processing 804/868 atomic regions from SNP 241120 to 241720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:54,762 DEBUG Processing 581/657 atomic regions from SNP 174142 to 174742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:54,815 DEBUG Processing 231/236 atomic regions from SNP 69080 to 69680 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:54,817 DEBUG Processing 684/1035 atomic regions from SNP 204935 to 205535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,900 DEBUG Processing 777/913 atomic regions from SNP 232992 to 233592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,913 DEBUG Processing 636/1143 atomic regions from SNP 190779 to 191379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,024 DEBUG Processing 805/868 atomic regions from SNP 241420 to 242020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:55,026 DEBUG Processing 582/657 atomic regions from SNP 174442 to 175042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,066 DEBUG Processing 232/236 atomic regions from SNP 69380 to 69980 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:55,109 DEBUG Processing 685/1035 atomic regions from SNP 205235 to 205835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,166 DEBUG Processing 778/913 atomic regions from SNP 233292 to 233892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,217 DEBUG Processing 637/1143 atomic regions from SNP 191079 to 191679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,288 DEBUG Processing 583/657 atomic regions from SNP 174742 to 175342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,297 DEBUG Processing 806/868 atomic regions from SNP 241720 to 242320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:55,318 DEBUG Processing 233/236 atomic regions from SNP 69680 to 70280 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:55,404 DEBUG Processing 686/1035 atomic regions from SNP 205535 to 206135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,436 DEBUG Processing 779/913 atomic regions from SNP 233592 to 234192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,523 DEBUG Processing 638/1143 atomic regions from SNP 191379 to 191979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,550 DEBUG Processing 584/657 atomic regions from SNP 175042 to 175642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,566 DEBUG Processing 234/236 atomic regions from SNP 69980 to 70580 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:55,573 DEBUG Processing 807/868 atomic regions from SNP 242020 to 242620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:55,697 DEBUG Processing 687/1035 atomic regions from SNP 205835 to 206435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,700 DEBUG Processing 780/913 atomic regions from SNP 233892 to 234492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,815 DEBUG Processing 585/657 atomic regions from SNP 175342 to 175942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,816 DEBUG Processing 235/236 atomic regions from SNP 70280 to 70880 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:55,835 DEBUG Processing 639/1143 atomic regions from SNP 191679 to 192279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,842 DEBUG Processing 808/868 atomic regions from SNP 242320 to 242920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:55,967 DEBUG Processing 781/913 atomic regions from SNP 234192 to 234792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,988 DEBUG Processing 688/1035 atomic regions from SNP 206135 to 206735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,074 DEBUG Processing 236/236 atomic regions from SNP 70580 to 71180 for chrX (subchromosome 5 of 5). 2025-01-31 09:47:56,085 DEBUG Processing 586/657 atomic regions from SNP 175642 to 176242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,114 DEBUG Processing 809/868 atomic regions from SNP 242620 to 243220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:56,145 DEBUG Processing 640/1143 atomic regions from SNP 191979 to 192579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,226 DEBUG Processing 782/913 atomic regions from SNP 234492 to 235092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,226 DEBUG Unique SNPs positions in subchromosome 5: 71181 2025-01-31 09:47:56,273 DEBUG Processing 689/1035 atomic regions from SNP 206435 to 207035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,350 DEBUG Subchromosome time: 65.77072580694221, subchromosome SNPs: 71181 2025-01-31 09:47:56,350 DEBUG Estimated BADs: [1.82, 0.00, 0.00, 3.63, 1.82, 3.63, 1.82, 3.63, 1.82, 0.45, 0.61, 1.82, 0.91, 1.82, 0.91, 1.82, 18.17] SNP counts: [33173, 2, 58, 6424, 51829, 4453, 40842, 7799, 16245, 16359, 13050, 1842, 22314, 3793, 16211, 13932, 39] SNP IDs counts: [33173, 2, 58, 6424, 51829, 4453, 40842, 7799, 16245, 16359, 13050, 1842, 22314, 3793, 16211, 13932, 39] Critical gap: 748966bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 26.91Mbp[1.12Mbp], 28.03Mbp[1.53Mbp], 30.24Mbp[0.89Mbp], 39.46Mbp, 71.42Mbp, 74.13Mbp, 99.04Mbp, 103.43Mbp, 113.25Mbp, 124.25Mbp[1.77Mbp], 133.93Mbp, 134.92Mbp, 150.38Mbp, 152.61Mbp, 162.13Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:47:56,350 DEBUG chrX time: 65.77125890890602 s 2025-01-31 09:47:56,352 DEBUG Processing 587/657 atomic regions from SNP 175942 to 176542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,384 DEBUG Processing 810/868 atomic regions from SNP 242920 to 243520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:56,451 DEBUG Processing 641/1143 atomic regions from SNP 192279 to 192879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,485 DEBUG Processing 783/913 atomic regions from SNP 234792 to 235392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,531 DEBUG chrX: Fitting background model for 15 segments 2025-01-31 09:47:56,581 DEBUG Processing 690/1035 atomic regions from SNP 206735 to 207335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,619 DEBUG Processing 588/657 atomic regions from SNP 176242 to 176842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,655 DEBUG Processing 811/868 atomic regions from SNP 243220 to 243820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:56,748 DEBUG Processing 784/913 atomic regions from SNP 235092 to 235692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,755 DEBUG Processing 642/1143 atomic regions from SNP 192579 to 193179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,884 DEBUG Processing 589/657 atomic regions from SNP 176542 to 177142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,902 DEBUG Processing 691/1035 atomic regions from SNP 207035 to 207635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,925 DEBUG Processing 812/868 atomic regions from SNP 243520 to 244120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:57,011 DEBUG Processing 785/913 atomic regions from SNP 235392 to 235992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,057 DEBUG Processing 643/1143 atomic regions from SNP 192879 to 193479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,147 DEBUG Processing 590/657 atomic regions from SNP 176842 to 177442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,213 DEBUG Processing 813/868 atomic regions from SNP 243820 to 244420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:57,217 DEBUG Processing 692/1035 atomic regions from SNP 207335 to 207935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,278 DEBUG Processing 786/913 atomic regions from SNP 235692 to 236292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,364 DEBUG Processing 644/1143 atomic regions from SNP 193179 to 193779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,423 DEBUG Processing 591/657 atomic regions from SNP 177142 to 177742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,523 DEBUG Processing 814/868 atomic regions from SNP 244120 to 244720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:57,541 DEBUG Processing 693/1035 atomic regions from SNP 207635 to 208235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,558 DEBUG Processing 787/913 atomic regions from SNP 235992 to 236592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,670 DEBUG Processing 645/1143 atomic regions from SNP 193479 to 194079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,684 DEBUG Processing 592/657 atomic regions from SNP 177442 to 178042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,813 DEBUG Processing 815/868 atomic regions from SNP 244420 to 245020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:57,828 DEBUG Processing 788/913 atomic regions from SNP 236292 to 236892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,863 DEBUG Processing 694/1035 atomic regions from SNP 207935 to 208535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,948 DEBUG Processing 593/657 atomic regions from SNP 177742 to 178342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,977 DEBUG Processing 646/1143 atomic regions from SNP 193779 to 194379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,096 DEBUG Processing 816/868 atomic regions from SNP 244720 to 245320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:58,101 DEBUG Processing 789/913 atomic regions from SNP 236592 to 237192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,180 DEBUG Processing 695/1035 atomic regions from SNP 208235 to 208835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,213 DEBUG Processing 594/657 atomic regions from SNP 178042 to 178642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:58,284 DEBUG Processing 647/1143 atomic regions from SNP 194079 to 194679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,367 DEBUG Processing 790/913 atomic regions from SNP 236892 to 237492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,388 DEBUG Processing 817/868 atomic regions from SNP 245020 to 245620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:58,479 DEBUG Processing 595/657 atomic regions from SNP 178342 to 178942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:58,480 DEBUG Processing 696/1035 atomic regions from SNP 208535 to 209135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,590 DEBUG Processing 648/1143 atomic regions from SNP 194379 to 194979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,629 DEBUG Processing 791/913 atomic regions from SNP 237192 to 237792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,666 DEBUG Processing 818/868 atomic regions from SNP 245320 to 245920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:58,746 DEBUG Processing 596/657 atomic regions from SNP 178642 to 179242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:58,784 DEBUG Processing 697/1035 atomic regions from SNP 208835 to 209435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,887 DEBUG Processing 792/913 atomic regions from SNP 237492 to 238092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,888 DEBUG Processing 649/1143 atomic regions from SNP 194679 to 195279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,950 DEBUG Processing 819/868 atomic regions from SNP 245620 to 246220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:59,015 DEBUG Processing 597/657 atomic regions from SNP 178942 to 179542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:59,079 DEBUG Processing 698/1035 atomic regions from SNP 209135 to 209735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,146 DEBUG Processing 793/913 atomic regions from SNP 237792 to 238392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,180 DEBUG Processing 650/1143 atomic regions from SNP 194979 to 195579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,231 DEBUG Processing 820/868 atomic regions from SNP 245920 to 246520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:59,297 DEBUG Processing 598/657 atomic regions from SNP 179242 to 179842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:59,393 DEBUG Processing 699/1035 atomic regions from SNP 209435 to 210035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,409 DEBUG Processing 794/913 atomic regions from SNP 238092 to 238692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,478 DEBUG Processing 651/1143 atomic regions from SNP 195279 to 195879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,517 DEBUG Processing 821/868 atomic regions from SNP 246220 to 246820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:59,568 DEBUG Processing 599/657 atomic regions from SNP 179542 to 180142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:59,671 DEBUG Processing 795/913 atomic regions from SNP 238392 to 238992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,698 DEBUG Processing 700/1035 atomic regions from SNP 209735 to 210335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,770 DEBUG Processing 652/1143 atomic regions from SNP 195579 to 196179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,799 DEBUG Processing 822/868 atomic regions from SNP 246520 to 247120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:59,831 DEBUG Processing 600/657 atomic regions from SNP 179842 to 180442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:59,930 DEBUG Processing 796/913 atomic regions from SNP 238692 to 239292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,991 DEBUG Processing 701/1035 atomic regions from SNP 210035 to 210635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,070 DEBUG Processing 653/1143 atomic regions from SNP 195879 to 196479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,080 DEBUG Processing 823/868 atomic regions from SNP 246820 to 247420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:00,102 DEBUG Processing 601/657 atomic regions from SNP 180142 to 180742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:00,195 DEBUG Processing 797/913 atomic regions from SNP 238992 to 239592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,281 DEBUG Processing 702/1035 atomic regions from SNP 210335 to 210935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,365 DEBUG Processing 824/868 atomic regions from SNP 247120 to 247720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:00,368 DEBUG Processing 602/657 atomic regions from SNP 180442 to 181042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:00,371 DEBUG Processing 654/1143 atomic regions from SNP 196179 to 196779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,465 DEBUG Processing 798/913 atomic regions from SNP 239292 to 239892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,588 DEBUG Processing 703/1035 atomic regions from SNP 210635 to 211235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,629 DEBUG Processing 603/657 atomic regions from SNP 180742 to 181342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:00,665 DEBUG Processing 825/868 atomic regions from SNP 247420 to 248020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:00,690 DEBUG Processing 655/1143 atomic regions from SNP 196479 to 197079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,728 DEBUG Processing 799/913 atomic regions from SNP 239592 to 240192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,870 DEBUG Processing 704/1035 atomic regions from SNP 210935 to 211535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,886 DEBUG Processing 604/657 atomic regions from SNP 181042 to 181642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:00,939 DEBUG Processing 826/868 atomic regions from SNP 247720 to 248320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:00,994 DEBUG Processing 656/1143 atomic regions from SNP 196779 to 197379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,002 DEBUG Processing 800/913 atomic regions from SNP 239892 to 240492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,150 DEBUG Processing 605/657 atomic regions from SNP 181342 to 181942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:01,164 DEBUG Processing 705/1035 atomic regions from SNP 211235 to 211835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,198 DEBUG Processing 827/868 atomic regions from SNP 248020 to 248620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:01,263 DEBUG Processing 801/913 atomic regions from SNP 240192 to 240792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,292 DEBUG Processing 657/1143 atomic regions from SNP 197079 to 197679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,435 DEBUG Processing 606/657 atomic regions from SNP 181642 to 182242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:01,455 DEBUG Processing 706/1035 atomic regions from SNP 211535 to 212135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,471 DEBUG Processing 828/868 atomic regions from SNP 248320 to 248920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:01,524 DEBUG Processing 802/913 atomic regions from SNP 240492 to 241092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,583 DEBUG Processing 658/1143 atomic regions from SNP 197379 to 197979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,723 DEBUG Processing 607/657 atomic regions from SNP 181942 to 182542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:01,756 DEBUG Processing 829/868 atomic regions from SNP 248620 to 249220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:01,763 DEBUG Processing 707/1035 atomic regions from SNP 211835 to 212435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,785 DEBUG Processing 803/913 atomic regions from SNP 240792 to 241392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,870 DEBUG Processing 659/1143 atomic regions from SNP 197679 to 198279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,011 DEBUG Processing 608/657 atomic regions from SNP 182242 to 182842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:02,045 DEBUG Processing 830/868 atomic regions from SNP 248920 to 249520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:02,055 DEBUG Processing 804/913 atomic regions from SNP 241092 to 241692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:02,076 DEBUG Processing 708/1035 atomic regions from SNP 212135 to 212735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,163 DEBUG Processing 660/1143 atomic regions from SNP 197979 to 198579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,303 DEBUG Processing 609/657 atomic regions from SNP 182542 to 183142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:02,332 DEBUG Processing 805/913 atomic regions from SNP 241392 to 241992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:02,334 DEBUG Processing 831/868 atomic regions from SNP 249220 to 249820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:02,392 DEBUG Processing 709/1035 atomic regions from SNP 212435 to 213035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,457 DEBUG Processing 661/1143 atomic regions from SNP 198279 to 198879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,591 DEBUG Processing 610/657 atomic regions from SNP 182842 to 183442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:02,604 DEBUG Processing 832/868 atomic regions from SNP 249520 to 250120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:02,607 DEBUG Processing 806/913 atomic regions from SNP 241692 to 242292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:02,683 DEBUG Processing 710/1035 atomic regions from SNP 212735 to 213335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,748 DEBUG Processing 662/1143 atomic regions from SNP 198579 to 199179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,874 DEBUG Processing 833/868 atomic regions from SNP 249820 to 250420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:02,875 DEBUG Processing 807/913 atomic regions from SNP 241992 to 242592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:02,885 DEBUG Processing 611/657 atomic regions from SNP 183142 to 183742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:02,975 DEBUG Processing 711/1035 atomic regions from SNP 213035 to 213635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,057 DEBUG Processing 663/1143 atomic regions from SNP 198879 to 199479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,144 DEBUG Processing 834/868 atomic regions from SNP 250120 to 250720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:03,144 DEBUG Processing 808/913 atomic regions from SNP 242292 to 242892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:03,186 DEBUG Processing 612/657 atomic regions from SNP 183442 to 184042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:03,278 DEBUG Processing 712/1035 atomic regions from SNP 213335 to 213935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,351 DEBUG Processing 664/1143 atomic regions from SNP 199179 to 199779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,412 DEBUG Processing 835/868 atomic regions from SNP 250420 to 251020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:03,414 DEBUG Processing 809/913 atomic regions from SNP 242592 to 243192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:03,467 DEBUG Processing 613/657 atomic regions from SNP 183742 to 184342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:03,580 DEBUG Processing 713/1035 atomic regions from SNP 213635 to 214235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,651 DEBUG Processing 665/1143 atomic regions from SNP 199479 to 200079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,683 DEBUG Processing 836/868 atomic regions from SNP 250720 to 251320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:03,687 DEBUG Processing 810/913 atomic regions from SNP 242892 to 243492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:03,743 DEBUG Processing 614/657 atomic regions from SNP 184042 to 184642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:03,875 DEBUG Processing 714/1035 atomic regions from SNP 213935 to 214535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,958 DEBUG Processing 837/868 atomic regions from SNP 251020 to 251620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:03,958 DEBUG Processing 666/1143 atomic regions from SNP 199779 to 200379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,960 DEBUG Processing 811/913 atomic regions from SNP 243192 to 243792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:04,028 DEBUG Processing 615/657 atomic regions from SNP 184342 to 184942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:04,163 DEBUG Processing 715/1035 atomic regions from SNP 214235 to 214835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,232 DEBUG Processing 812/913 atomic regions from SNP 243492 to 244092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:04,234 DEBUG Processing 838/868 atomic regions from SNP 251320 to 251920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:04,265 DEBUG Processing 667/1143 atomic regions from SNP 200079 to 200679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,317 DEBUG Processing 616/657 atomic regions from SNP 184642 to 185242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:04,456 DEBUG Processing 716/1035 atomic regions from SNP 214535 to 215135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,504 DEBUG Processing 813/913 atomic regions from SNP 243792 to 244392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:04,521 DEBUG Processing 839/868 atomic regions from SNP 251620 to 252220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:04,572 DEBUG Processing 668/1143 atomic regions from SNP 200379 to 200979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,598 DEBUG Processing 617/657 atomic regions from SNP 184942 to 185542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:04,746 DEBUG Processing 717/1035 atomic regions from SNP 214835 to 215435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,773 DEBUG Processing 814/913 atomic regions from SNP 244092 to 244692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:04,806 DEBUG Processing 840/868 atomic regions from SNP 251920 to 252520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:04,882 DEBUG Processing 669/1143 atomic regions from SNP 200679 to 201279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,896 DEBUG Processing 618/657 atomic regions from SNP 185242 to 185842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:05,037 DEBUG Processing 718/1035 atomic regions from SNP 215135 to 215735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,051 DEBUG Processing 815/913 atomic regions from SNP 244392 to 244992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:05,097 DEBUG Processing 841/868 atomic regions from SNP 252220 to 252820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:05,182 DEBUG Processing 670/1143 atomic regions from SNP 200979 to 201579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,183 DEBUG Processing 619/657 atomic regions from SNP 185542 to 186142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:05,322 DEBUG Processing 816/913 atomic regions from SNP 244692 to 245292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:05,336 DEBUG Processing 719/1035 atomic regions from SNP 215435 to 216035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,373 DEBUG Processing 842/868 atomic regions from SNP 252520 to 253120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:05,471 DEBUG Processing 620/657 atomic regions from SNP 185842 to 186442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:05,484 DEBUG Processing 671/1143 atomic regions from SNP 201279 to 201879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,605 DEBUG Processing 817/913 atomic regions from SNP 244992 to 245592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:05,639 DEBUG Processing 720/1035 atomic regions from SNP 215735 to 216335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,649 DEBUG Processing 843/868 atomic regions from SNP 252820 to 253420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:05,758 DEBUG Processing 621/657 atomic regions from SNP 186142 to 186742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:05,790 DEBUG Processing 672/1143 atomic regions from SNP 201579 to 202179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,874 DEBUG Processing 818/913 atomic regions from SNP 245292 to 245892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:05,924 DEBUG Processing 844/868 atomic regions from SNP 253120 to 253720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:05,936 DEBUG Processing 721/1035 atomic regions from SNP 216035 to 216635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,042 DEBUG Processing 622/657 atomic regions from SNP 186442 to 187042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:06,090 DEBUG Processing 673/1143 atomic regions from SNP 201879 to 202479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,144 DEBUG Processing 819/913 atomic regions from SNP 245592 to 246192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:06,194 DEBUG Processing 845/868 atomic regions from SNP 253420 to 254020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:06,237 DEBUG Processing 722/1035 atomic regions from SNP 216335 to 216935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,331 DEBUG Processing 623/657 atomic regions from SNP 186742 to 187342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:06,395 DEBUG Processing 674/1143 atomic regions from SNP 202179 to 202779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,416 DEBUG Processing 820/913 atomic regions from SNP 245892 to 246492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:06,470 DEBUG Processing 846/868 atomic regions from SNP 253720 to 254320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:06,533 DEBUG Processing 723/1035 atomic regions from SNP 216635 to 217235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,610 DEBUG Processing 624/657 atomic regions from SNP 187042 to 187642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:06,680 DEBUG Processing 821/913 atomic regions from SNP 246192 to 246792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:06,696 DEBUG Processing 675/1143 atomic regions from SNP 202479 to 203079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,735 DEBUG Processing 847/868 atomic regions from SNP 254020 to 254620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:06,837 DEBUG Processing 724/1035 atomic regions from SNP 216935 to 217535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,901 DEBUG Processing 625/657 atomic regions from SNP 187342 to 187942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:06,972 DEBUG Processing 822/913 atomic regions from SNP 246492 to 247092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:07,003 DEBUG Processing 676/1143 atomic regions from SNP 202779 to 203379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,006 DEBUG Processing 848/868 atomic regions from SNP 254320 to 254920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:07,133 DEBUG Processing 725/1035 atomic regions from SNP 217235 to 217835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,178 DEBUG Processing 626/657 atomic regions from SNP 187642 to 188242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:07,245 DEBUG Processing 823/913 atomic regions from SNP 246792 to 247392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:07,280 DEBUG Processing 849/868 atomic regions from SNP 254620 to 255220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:07,324 DEBUG Processing 677/1143 atomic regions from SNP 203079 to 203679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,426 DEBUG Processing 726/1035 atomic regions from SNP 217535 to 218135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,442 DEBUG Processing 627/657 atomic regions from SNP 187942 to 188542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:07,517 DEBUG Processing 824/913 atomic regions from SNP 247092 to 247692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:07,555 DEBUG Processing 850/868 atomic regions from SNP 254920 to 255520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:07,653 DEBUG Processing 678/1143 atomic regions from SNP 203379 to 203979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,708 DEBUG Processing 628/657 atomic regions from SNP 188242 to 188842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:07,716 DEBUG Processing 727/1035 atomic regions from SNP 217835 to 218435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,791 DEBUG Processing 825/913 atomic regions from SNP 247392 to 247992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:07,827 DEBUG Processing 851/868 atomic regions from SNP 255220 to 255820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:07,971 DEBUG Processing 679/1143 atomic regions from SNP 203679 to 204279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,972 DEBUG Processing 629/657 atomic regions from SNP 188542 to 189142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:08,013 DEBUG Processing 728/1035 atomic regions from SNP 218135 to 218735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,069 DEBUG Processing 826/913 atomic regions from SNP 247692 to 248292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,112 DEBUG Processing 852/868 atomic regions from SNP 255520 to 256120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:08,230 DEBUG Processing 630/657 atomic regions from SNP 188842 to 189442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:08,285 DEBUG Processing 680/1143 atomic regions from SNP 203979 to 204579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,305 DEBUG Processing 729/1035 atomic regions from SNP 218435 to 219035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,344 DEBUG Processing 827/913 atomic regions from SNP 247992 to 248592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,406 DEBUG Processing 853/868 atomic regions from SNP 255820 to 256420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:08,505 DEBUG Processing 631/657 atomic regions from SNP 189142 to 189742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:08,596 DEBUG Processing 730/1035 atomic regions from SNP 218735 to 219335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,596 DEBUG Processing 681/1143 atomic regions from SNP 204279 to 204879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,620 DEBUG Processing 828/913 atomic regions from SNP 248292 to 248892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,713 DEBUG Processing 854/868 atomic regions from SNP 256120 to 256720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:08,787 DEBUG Processing 632/657 atomic regions from SNP 189442 to 190042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:08,885 DEBUG Processing 829/913 atomic regions from SNP 248592 to 249192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,886 DEBUG Processing 731/1035 atomic regions from SNP 219035 to 219635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,913 DEBUG Processing 682/1143 atomic regions from SNP 204579 to 205179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,998 DEBUG Processing 855/868 atomic regions from SNP 256420 to 257020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:09,075 DEBUG Processing 633/657 atomic regions from SNP 189742 to 190342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:09,148 DEBUG Processing 830/913 atomic regions from SNP 248892 to 249492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:09,175 DEBUG Processing 732/1035 atomic regions from SNP 219335 to 219935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,236 DEBUG Processing 683/1143 atomic regions from SNP 204879 to 205479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,276 DEBUG Processing 856/868 atomic regions from SNP 256720 to 257320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:09,354 DEBUG Processing 634/657 atomic regions from SNP 190042 to 190642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:09,417 DEBUG Processing 831/913 atomic regions from SNP 249192 to 249792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:09,488 DEBUG Processing 733/1035 atomic regions from SNP 219635 to 220235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,580 DEBUG Processing 684/1143 atomic regions from SNP 205179 to 205779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,581 DEBUG Processing 857/868 atomic regions from SNP 257020 to 257620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:09,652 DEBUG Processing 635/657 atomic regions from SNP 190342 to 190942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:09,715 DEBUG Processing 832/913 atomic regions from SNP 249492 to 250092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:09,802 DEBUG Processing 734/1035 atomic regions from SNP 219935 to 220535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,856 DEBUG Processing 858/868 atomic regions from SNP 257320 to 257920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:09,910 DEBUG Processing 685/1143 atomic regions from SNP 205479 to 206079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,925 DEBUG Processing 636/657 atomic regions from SNP 190642 to 191242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:09,984 DEBUG Processing 833/913 atomic regions from SNP 249792 to 250392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:10,083 DEBUG Processing 735/1035 atomic regions from SNP 220235 to 220835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,116 DEBUG Processing 859/868 atomic regions from SNP 257620 to 258220 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:10,192 DEBUG Processing 637/657 atomic regions from SNP 190942 to 191542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:10,216 DEBUG Processing 686/1143 atomic regions from SNP 205779 to 206379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,253 DEBUG Processing 834/913 atomic regions from SNP 250092 to 250692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:10,362 DEBUG Processing 736/1035 atomic regions from SNP 220535 to 221135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,373 DEBUG Processing 860/868 atomic regions from SNP 257920 to 258520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:10,456 DEBUG Processing 638/657 atomic regions from SNP 191242 to 191842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:10,530 DEBUG Processing 835/913 atomic regions from SNP 250392 to 250992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:10,553 DEBUG Processing 687/1143 atomic regions from SNP 206079 to 206679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,646 DEBUG Processing 861/868 atomic regions from SNP 258220 to 258820 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:10,676 DEBUG Processing 737/1035 atomic regions from SNP 220835 to 221435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,719 DEBUG Processing 639/657 atomic regions from SNP 191542 to 192142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:10,799 DEBUG Processing 836/913 atomic regions from SNP 250692 to 251292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:10,892 DEBUG Processing 688/1143 atomic regions from SNP 206379 to 206979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,923 DEBUG Processing 862/868 atomic regions from SNP 258520 to 259120 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:10,976 DEBUG Processing 738/1035 atomic regions from SNP 221135 to 221735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,989 DEBUG Processing 640/657 atomic regions from SNP 191842 to 192442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:11,069 DEBUG Processing 837/913 atomic regions from SNP 250992 to 251592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:11,206 DEBUG Processing 863/868 atomic regions from SNP 258820 to 259420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:11,240 DEBUG Processing 689/1143 atomic regions from SNP 206679 to 207279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,279 DEBUG Processing 641/657 atomic regions from SNP 192142 to 192742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:11,286 DEBUG Processing 739/1035 atomic regions from SNP 221435 to 222035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,333 DEBUG Processing 838/913 atomic regions from SNP 251292 to 251892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:11,483 DEBUG Processing 864/868 atomic regions from SNP 259120 to 259720 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:11,556 DEBUG Processing 642/657 atomic regions from SNP 192442 to 193042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:11,573 DEBUG Processing 690/1143 atomic regions from SNP 206979 to 207579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,585 DEBUG Processing 740/1035 atomic regions from SNP 221735 to 222335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,601 DEBUG Processing 839/913 atomic regions from SNP 251592 to 252192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:11,754 DEBUG Processing 865/868 atomic regions from SNP 259420 to 260020 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:11,830 DEBUG Processing 643/657 atomic regions from SNP 192742 to 193342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:11,873 DEBUG Processing 840/913 atomic regions from SNP 251892 to 252492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:11,889 DEBUG Processing 741/1035 atomic regions from SNP 222035 to 222635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,900 DEBUG Processing 691/1143 atomic regions from SNP 207279 to 207879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,025 DEBUG Processing 866/868 atomic regions from SNP 259720 to 260320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:12,127 DEBUG Processing 644/657 atomic regions from SNP 193042 to 193642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:12,156 DEBUG Processing 841/913 atomic regions from SNP 252192 to 252792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:12,207 DEBUG Processing 742/1035 atomic regions from SNP 222335 to 222935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,223 DEBUG Processing 692/1143 atomic regions from SNP 207579 to 208179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,288 DEBUG Processing 867/868 atomic regions from SNP 260020 to 260620 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:12,417 DEBUG Processing 645/657 atomic regions from SNP 193342 to 193942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:12,423 DEBUG Processing 842/913 atomic regions from SNP 252492 to 253092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:12,526 DEBUG Processing 743/1035 atomic regions from SNP 222635 to 223235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,527 DEBUG Processing 693/1143 atomic regions from SNP 207879 to 208479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,552 DEBUG Processing 868/868 atomic regions from SNP 260320 to 260920 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:12,693 DEBUG Processing 843/913 atomic regions from SNP 252792 to 253392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:12,716 DEBUG Unique SNPs positions in subchromosome 1: 260921 2025-01-31 09:48:12,721 DEBUG Processing 646/657 atomic regions from SNP 193642 to 194242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:12,840 DEBUG Processing 694/1143 atomic regions from SNP 208179 to 208779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,859 DEBUG Processing 744/1035 atomic regions from SNP 222935 to 223535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,954 DEBUG Processing 844/913 atomic regions from SNP 253092 to 253692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:13,002 DEBUG Processing 647/657 atomic regions from SNP 193942 to 194542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:13,144 DEBUG Processing 695/1143 atomic regions from SNP 208479 to 209079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,174 DEBUG Processing 745/1035 atomic regions from SNP 223235 to 223835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,225 DEBUG Processing 845/913 atomic regions from SNP 253392 to 253992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:13,286 DEBUG Processing 648/657 atomic regions from SNP 194242 to 194842 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:13,457 DEBUG Processing 696/1143 atomic regions from SNP 208779 to 209379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,489 DEBUG Processing 746/1035 atomic regions from SNP 223535 to 224135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,495 DEBUG Processing 846/913 atomic regions from SNP 253692 to 254292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:13,564 DEBUG Processing 649/657 atomic regions from SNP 194542 to 195142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:13,767 DEBUG Processing 847/913 atomic regions from SNP 253992 to 254592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:13,775 DEBUG Processing 697/1143 atomic regions from SNP 209079 to 209679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,787 DEBUG Processing 747/1035 atomic regions from SNP 223835 to 224435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,852 DEBUG Processing 650/657 atomic regions from SNP 194842 to 195442 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:14,048 DEBUG Processing 848/913 atomic regions from SNP 254292 to 254892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:14,089 DEBUG Processing 698/1143 atomic regions from SNP 209379 to 209979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,102 DEBUG Processing 748/1035 atomic regions from SNP 224135 to 224735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,154 DEBUG Processing 651/657 atomic regions from SNP 195142 to 195742 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:14,321 DEBUG Processing 849/913 atomic regions from SNP 254592 to 255192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:14,398 DEBUG Processing 699/1143 atomic regions from SNP 209679 to 210279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,413 DEBUG Processing 749/1035 atomic regions from SNP 224435 to 225035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,444 DEBUG Processing 652/657 atomic regions from SNP 195442 to 196042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:14,593 DEBUG Processing 850/913 atomic regions from SNP 254892 to 255492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:14,608 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:48:14,707 DEBUG Processing 700/1143 atomic regions from SNP 209979 to 210579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,723 DEBUG Processing 750/1035 atomic regions from SNP 224735 to 225335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,727 DEBUG Processing 653/657 atomic regions from SNP 195742 to 196342 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:14,860 DEBUG Processing 851/913 atomic regions from SNP 255192 to 255792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:15,009 DEBUG Processing 654/657 atomic regions from SNP 196042 to 196642 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:15,016 DEBUG Processing 701/1143 atomic regions from SNP 210279 to 210879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,031 DEBUG Processing 751/1035 atomic regions from SNP 225035 to 225635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,133 DEBUG Processing 852/913 atomic regions from SNP 255492 to 256092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:15,302 DEBUG Processing 655/657 atomic regions from SNP 196342 to 196942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:15,327 DEBUG Processing 702/1143 atomic regions from SNP 210579 to 211179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,340 DEBUG Processing 752/1035 atomic regions from SNP 225335 to 225935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,397 DEBUG Processing 853/913 atomic regions from SNP 255792 to 256392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:15,603 DEBUG Processing 656/657 atomic regions from SNP 196642 to 197242 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:15,639 DEBUG Processing 703/1143 atomic regions from SNP 210879 to 211479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,658 DEBUG Processing 753/1035 atomic regions from SNP 225635 to 226235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,669 DEBUG Processing 854/913 atomic regions from SNP 256092 to 256692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:15,896 DEBUG Processing 657/657 atomic regions from SNP 196942 to 197542 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:15,947 DEBUG Processing 855/913 atomic regions from SNP 256392 to 256992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:15,954 DEBUG Processing 704/1143 atomic regions from SNP 211179 to 211779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,968 DEBUG Processing 754/1035 atomic regions from SNP 225935 to 226535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,074 DEBUG Unique SNPs positions in subchromosome 2: 197543 2025-01-31 09:48:16,227 DEBUG Processing 856/913 atomic regions from SNP 256692 to 257292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:16,271 DEBUG Processing 705/1143 atomic regions from SNP 211479 to 212079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,292 DEBUG Processing 755/1035 atomic regions from SNP 226235 to 226835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,499 DEBUG Processing 857/913 atomic regions from SNP 256992 to 257592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:16,577 DEBUG Processing 706/1143 atomic regions from SNP 211779 to 212379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,606 DEBUG Processing 756/1035 atomic regions from SNP 226535 to 227135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,763 DEBUG Processing 858/913 atomic regions from SNP 257292 to 257892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:16,882 DEBUG Processing 707/1143 atomic regions from SNP 212079 to 212679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,927 DEBUG Processing 757/1035 atomic regions from SNP 226835 to 227435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,026 DEBUG Processing 859/913 atomic regions from SNP 257592 to 258192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:17,188 DEBUG Processing 708/1143 atomic regions from SNP 212379 to 212979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,235 DEBUG Processing 758/1035 atomic regions from SNP 227135 to 227735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,291 DEBUG Processing 860/913 atomic regions from SNP 257892 to 258492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:17,493 DEBUG Processing 709/1143 atomic regions from SNP 212679 to 213279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,536 DEBUG Processing 759/1035 atomic regions from SNP 227435 to 228035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,563 DEBUG Processing 861/913 atomic regions from SNP 258192 to 258792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:17,796 DEBUG Processing 710/1143 atomic regions from SNP 212979 to 213579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,833 DEBUG Processing 862/913 atomic regions from SNP 258492 to 259092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:17,834 DEBUG Processing 760/1035 atomic regions from SNP 227735 to 228335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,100 DEBUG Processing 711/1143 atomic regions from SNP 213279 to 213879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,104 DEBUG Processing 863/913 atomic regions from SNP 258792 to 259392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:18,138 DEBUG Processing 761/1035 atomic regions from SNP 228035 to 228635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,376 DEBUG Processing 864/913 atomic regions from SNP 259092 to 259692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:18,407 DEBUG Processing 712/1143 atomic regions from SNP 213579 to 214179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,456 DEBUG Processing 762/1035 atomic regions from SNP 228335 to 228935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,656 DEBUG Processing 865/913 atomic regions from SNP 259392 to 259992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:18,720 DEBUG Processing 713/1143 atomic regions from SNP 213879 to 214479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,774 DEBUG Processing 763/1035 atomic regions from SNP 228635 to 229235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,931 DEBUG Processing 866/913 atomic regions from SNP 259692 to 260292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:19,029 DEBUG Processing 714/1143 atomic regions from SNP 214179 to 214779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,087 DEBUG Processing 764/1035 atomic regions from SNP 228935 to 229535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,198 DEBUG Processing 867/913 atomic regions from SNP 259992 to 260592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:19,332 DEBUG Processing 715/1143 atomic regions from SNP 214479 to 215079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,393 DEBUG Processing 765/1035 atomic regions from SNP 229235 to 229835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,464 DEBUG Processing 868/913 atomic regions from SNP 260292 to 260892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:19,632 DEBUG Processing 716/1143 atomic regions from SNP 214779 to 215379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,710 DEBUG Processing 766/1035 atomic regions from SNP 229535 to 230135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,729 DEBUG Processing 869/913 atomic regions from SNP 260592 to 261192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:19,939 DEBUG Processing 717/1143 atomic regions from SNP 215079 to 215679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,000 DEBUG Processing 870/913 atomic regions from SNP 260892 to 261492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:20,035 DEBUG Processing 767/1035 atomic regions from SNP 229835 to 230435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,248 DEBUG Processing 718/1143 atomic regions from SNP 215379 to 215979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,273 DEBUG Processing 871/913 atomic regions from SNP 261192 to 261792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:20,363 DEBUG Processing 768/1035 atomic regions from SNP 230135 to 230735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,549 DEBUG Processing 872/913 atomic regions from SNP 261492 to 262092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:20,556 DEBUG Processing 719/1143 atomic regions from SNP 215679 to 216279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,669 DEBUG Processing 769/1035 atomic regions from SNP 230435 to 231035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,825 DEBUG Processing 873/913 atomic regions from SNP 261792 to 262392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:20,872 DEBUG Processing 720/1143 atomic regions from SNP 215979 to 216579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,983 DEBUG Processing 770/1035 atomic regions from SNP 230735 to 231335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,092 DEBUG Processing 874/913 atomic regions from SNP 262092 to 262692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:21,185 DEBUG Processing 721/1143 atomic regions from SNP 216279 to 216879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,280 DEBUG Processing 771/1035 atomic regions from SNP 231035 to 231635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,356 DEBUG Processing 875/913 atomic regions from SNP 262392 to 262992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:21,492 DEBUG Processing 722/1143 atomic regions from SNP 216579 to 217179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,591 DEBUG Processing 772/1035 atomic regions from SNP 231335 to 231935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,619 DEBUG Processing 876/913 atomic regions from SNP 262692 to 263292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:21,790 DEBUG Processing 723/1143 atomic regions from SNP 216879 to 217479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,882 DEBUG Processing 877/913 atomic regions from SNP 262992 to 263592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:21,898 DEBUG Processing 773/1035 atomic regions from SNP 231635 to 232235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,085 DEBUG Processing 724/1143 atomic regions from SNP 217179 to 217779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,127 DEBUG Subchromosome time: 201.8254538840847, subchromosome SNPs: 197543 2025-01-31 09:48:22,127 DEBUG Estimated BADs: [2.16, 0.54, 1.08, 2.16, 0.72, 4.32, 4.32, 1.08, 2.16, 0.72, 2.16, 0.54, 1.08, 2.16, 4.32, 1.08, 0.27, 2.16, 4.32, 2.16, 4.32] SNP counts: [22704, 4499, 23624, 4071, 8728, 3219, 11229, 5116, 19565, 29724, 14119, 5694, 14385, 10810, 6584, 2732, 3267, 5234, 45265, 7716, 16103] SNP IDs counts: [22704, 4499, 23624, 4071, 8728, 3219, 11229, 5116, 19565, 29724, 14119, 5694, 14385, 10810, 6584, 2732, 3267, 5234, 45265, 7716, 16103] Critical gap: 681204bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 16.31Mbp, 19.03Mbp, 32.69Mbp, 34.91Mbp, 40.04Mbp, 41.86Mbp[0.85Mbp], 48.76Mbp, 51.76Mbp, 64.19Mbp, 81.60Mbp, 89.51Mbp, 92.90Mbp, 100.94Mbp, 106.80Mbp, 110.35Mbp, 111.93Mbp, 114.01Mbp, 116.99Mbp, 141.72Mbp, 147.90Mbp, 156.51Mbp] 2025-01-31 09:48:22,127 DEBUG chr4 time: 201.82601667498238 s 2025-01-31 09:48:22,151 DEBUG Processing 878/913 atomic regions from SNP 263292 to 263892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:22,193 DEBUG Processing 774/1035 atomic regions from SNP 231935 to 232535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,293 DEBUG chr4: Fitting background model for 21 segments 2025-01-31 09:48:22,383 DEBUG Processing 725/1143 atomic regions from SNP 217479 to 218079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,423 DEBUG Processing 879/913 atomic regions from SNP 263592 to 264192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:22,493 DEBUG Processing 775/1035 atomic regions from SNP 232235 to 232835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,684 DEBUG Processing 726/1143 atomic regions from SNP 217779 to 218379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,698 DEBUG Processing 880/913 atomic regions from SNP 263892 to 264492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:22,790 DEBUG Processing 776/1035 atomic regions from SNP 232535 to 233135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,967 DEBUG Processing 881/913 atomic regions from SNP 264192 to 264792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:22,989 DEBUG Processing 727/1143 atomic regions from SNP 218079 to 218679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,996 DEBUG Subchromosome time: 266.97749465703964, subchromosome SNPs: 260921 2025-01-31 09:48:22,997 DEBUG Estimated BADs: [2.11, 1.06, 2.11, 4.22, 2.11, 1.06, 2.11, 0.53, 2.11, 0.70, 2.11, 0.70, 2.11, 4.22, 2.11, 4.22, 2.11, 4.22, 2.11] SNP counts: [4913, 23182, 16799, 11500, 6002, 19515, 6898, 14697, 9612, 5386, 11997, 16817, 36330, 9567, 9614, 9286, 17701, 15002, 16103] SNP IDs counts: [4913, 23182, 16799, 11500, 6002, 19515, 6898, 14697, 9612, 5386, 11997, 16817, 36330, 9567, 9614, 9286, 17701, 15002, 16103] Critical gap: 668940bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.87Mbp, 20.87Mbp, 30.34Mbp, 36.46Mbp, 39.74Mbp, 50.83Mbp, 54.52Mbp, 63.19Mbp, 68.39Mbp, 71.60Mbp, 78.10Mbp, 87.90Mbp, 110.33Mbp, 115.33Mbp, 120.33Mbp, 125.28Mbp, 134.76Mbp, 142.83Mbp, 151.83Mbp] 2025-01-31 09:48:22,997 DEBUG chr5 time: 266.9780977140181 s 2025-01-31 09:48:23,088 DEBUG Processing 777/1035 atomic regions from SNP 232835 to 233435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,153 DEBUG chr5: Fitting background model for 19 segments 2025-01-31 09:48:23,235 DEBUG Processing 882/913 atomic regions from SNP 264492 to 265092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:23,294 DEBUG Processing 728/1143 atomic regions from SNP 218379 to 218979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,390 DEBUG Processing 778/1035 atomic regions from SNP 233135 to 233735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,505 DEBUG Processing 883/913 atomic regions from SNP 264792 to 265392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:23,603 DEBUG Processing 729/1143 atomic regions from SNP 218679 to 219279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,686 DEBUG Processing 779/1035 atomic regions from SNP 233435 to 234035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,771 DEBUG Processing 884/913 atomic regions from SNP 265092 to 265692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:23,908 DEBUG Processing 730/1143 atomic regions from SNP 218979 to 219579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,991 DEBUG Processing 780/1035 atomic regions from SNP 233735 to 234335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,045 DEBUG Processing 885/913 atomic regions from SNP 265392 to 265992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:24,210 DEBUG Processing 731/1143 atomic regions from SNP 219279 to 219879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,288 DEBUG Processing 781/1035 atomic regions from SNP 234035 to 234635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,312 DEBUG Processing 886/913 atomic regions from SNP 265692 to 266292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:24,515 DEBUG Processing 732/1143 atomic regions from SNP 219579 to 220179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,585 DEBUG Processing 887/913 atomic regions from SNP 265992 to 266592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:24,587 DEBUG Processing 782/1035 atomic regions from SNP 234335 to 234935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,822 DEBUG Processing 733/1143 atomic regions from SNP 219879 to 220479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,857 DEBUG Processing 888/913 atomic regions from SNP 266292 to 266892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:24,884 DEBUG Processing 783/1035 atomic regions from SNP 234635 to 235235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,130 DEBUG Processing 889/913 atomic regions from SNP 266592 to 267192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:25,145 DEBUG Processing 734/1143 atomic regions from SNP 220179 to 220779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,182 DEBUG Processing 784/1035 atomic regions from SNP 234935 to 235535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,404 DEBUG Processing 890/913 atomic regions from SNP 266892 to 267492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:25,478 DEBUG Processing 735/1143 atomic regions from SNP 220479 to 221079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,480 DEBUG Processing 785/1035 atomic regions from SNP 235235 to 235835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,676 DEBUG Processing 891/913 atomic regions from SNP 267192 to 267792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:25,773 DEBUG Processing 786/1035 atomic regions from SNP 235535 to 236135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,805 DEBUG Processing 736/1143 atomic regions from SNP 220779 to 221379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,948 DEBUG Processing 892/913 atomic regions from SNP 267492 to 268092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:26,069 DEBUG Processing 787/1035 atomic regions from SNP 235835 to 236435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,117 DEBUG Processing 737/1143 atomic regions from SNP 221079 to 221679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,220 DEBUG Processing 893/913 atomic regions from SNP 267792 to 268392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:26,359 DEBUG Processing 788/1035 atomic regions from SNP 236135 to 236735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,442 DEBUG Processing 738/1143 atomic regions from SNP 221379 to 221979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,506 DEBUG Processing 894/913 atomic regions from SNP 268092 to 268692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:26,647 DEBUG Processing 789/1035 atomic regions from SNP 236435 to 237035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,755 DEBUG Processing 739/1143 atomic regions from SNP 221679 to 222279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,781 DEBUG Processing 895/913 atomic regions from SNP 268392 to 268992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:26,938 DEBUG Processing 790/1035 atomic regions from SNP 236735 to 237335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,050 DEBUG Processing 896/913 atomic regions from SNP 268692 to 269292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:27,063 DEBUG Processing 740/1143 atomic regions from SNP 221979 to 222579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,227 DEBUG Processing 791/1035 atomic regions from SNP 237035 to 237635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,321 DEBUG Processing 897/913 atomic regions from SNP 268992 to 269592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:27,367 DEBUG Processing 741/1143 atomic regions from SNP 222279 to 222879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,522 DEBUG Processing 792/1035 atomic regions from SNP 237335 to 237935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,593 DEBUG Processing 898/913 atomic regions from SNP 269292 to 269892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:27,671 DEBUG Processing 742/1143 atomic regions from SNP 222579 to 223179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,822 DEBUG Processing 793/1035 atomic regions from SNP 237635 to 238235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,866 DEBUG Processing 899/913 atomic regions from SNP 269592 to 270192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:27,975 DEBUG Processing 743/1143 atomic regions from SNP 222879 to 223479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,122 DEBUG Processing 794/1035 atomic regions from SNP 237935 to 238535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,141 DEBUG Processing 900/913 atomic regions from SNP 269892 to 270492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:28,278 DEBUG Processing 744/1143 atomic regions from SNP 223179 to 223779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,415 DEBUG Processing 901/913 atomic regions from SNP 270192 to 270792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:28,440 DEBUG Processing 795/1035 atomic regions from SNP 238235 to 238835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,593 DEBUG Processing 745/1143 atomic regions from SNP 223479 to 224079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,703 DEBUG Processing 902/913 atomic regions from SNP 270492 to 271092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:28,746 DEBUG Processing 796/1035 atomic regions from SNP 238535 to 239135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,897 DEBUG Processing 746/1143 atomic regions from SNP 223779 to 224379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,978 DEBUG Processing 903/913 atomic regions from SNP 270792 to 271392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:29,041 DEBUG Processing 797/1035 atomic regions from SNP 238835 to 239435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,213 DEBUG Processing 747/1143 atomic regions from SNP 224079 to 224679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,255 DEBUG Processing 904/913 atomic regions from SNP 271092 to 271692 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:29,336 DEBUG Processing 798/1035 atomic regions from SNP 239135 to 239735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,530 DEBUG Processing 748/1143 atomic regions from SNP 224379 to 224979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,534 DEBUG Processing 905/913 atomic regions from SNP 271392 to 271992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:29,636 DEBUG Processing 799/1035 atomic regions from SNP 239435 to 240035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,818 DEBUG Processing 906/913 atomic regions from SNP 271692 to 272292 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:29,844 DEBUG Processing 749/1143 atomic regions from SNP 224679 to 225279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,939 DEBUG Processing 800/1035 atomic regions from SNP 239735 to 240335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,092 DEBUG Processing 907/913 atomic regions from SNP 271992 to 272592 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:30,157 DEBUG Processing 750/1143 atomic regions from SNP 224979 to 225579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,239 DEBUG Processing 801/1035 atomic regions from SNP 240035 to 240635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,363 DEBUG Processing 908/913 atomic regions from SNP 272292 to 272892 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:30,473 DEBUG Processing 751/1143 atomic regions from SNP 225279 to 225879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,544 DEBUG Processing 802/1035 atomic regions from SNP 240335 to 240935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,630 DEBUG Processing 909/913 atomic regions from SNP 272592 to 273192 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:30,808 DEBUG Processing 752/1143 atomic regions from SNP 225579 to 226179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,852 DEBUG Processing 803/1035 atomic regions from SNP 240635 to 241235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,911 DEBUG Processing 910/913 atomic regions from SNP 272892 to 273492 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:30,974 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:48:30,977 DEBUG chr6: Signal quantile: 0.994. signal threshold: 12. Best RMSEA: 0.049 2025-01-31 09:48:31,154 DEBUG Processing 753/1143 atomic regions from SNP 225879 to 226479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,157 DEBUG Processing 804/1035 atomic regions from SNP 240935 to 241535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,192 DEBUG Processing 911/913 atomic regions from SNP 273192 to 273792 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:31,466 DEBUG Processing 805/1035 atomic regions from SNP 241235 to 241835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,475 DEBUG Processing 912/913 atomic regions from SNP 273492 to 274092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:31,496 DEBUG Processing 754/1143 atomic regions from SNP 226179 to 226779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,760 DEBUG Processing 913/913 atomic regions from SNP 273792 to 274392 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:31,773 DEBUG Processing 806/1035 atomic regions from SNP 241535 to 242135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,841 DEBUG Processing 755/1143 atomic regions from SNP 226479 to 227079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,921 DEBUG Unique SNPs positions in subchromosome 1: 274393 2025-01-31 09:48:32,079 DEBUG Processing 807/1035 atomic regions from SNP 241835 to 242435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,183 DEBUG Processing 756/1143 atomic regions from SNP 226779 to 227379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,380 DEBUG Processing 808/1035 atomic regions from SNP 242135 to 242735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,508 DEBUG Processing 757/1143 atomic regions from SNP 227079 to 227679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,694 DEBUG Processing 809/1035 atomic regions from SNP 242435 to 243035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,847 DEBUG Processing 758/1143 atomic regions from SNP 227379 to 227979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,996 DEBUG Processing 810/1035 atomic regions from SNP 242735 to 243335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,189 DEBUG Processing 759/1143 atomic regions from SNP 227679 to 228279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,292 DEBUG Processing 811/1035 atomic regions from SNP 243035 to 243635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,519 DEBUG Processing 760/1143 atomic regions from SNP 227979 to 228579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,589 DEBUG Processing 812/1035 atomic regions from SNP 243335 to 243935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,862 DEBUG Processing 761/1143 atomic regions from SNP 228279 to 228879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,888 DEBUG Processing 813/1035 atomic regions from SNP 243635 to 244235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,148 DEBUG chr6 total SNP count: 260217 2025-01-31 09:48:34,148 DEBUG chr6 length: 149736546 2025-01-31 09:48:34,148 DEBUG ----------------------------------------- 2025-01-31 09:48:34,149 INFO Processing SNPs in chr6 2025-01-31 09:48:34,192 DEBUG Processing 814/1035 atomic regions from SNP 243935 to 244535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,210 DEBUG Processing 762/1143 atomic regions from SNP 228579 to 229179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,421 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 260217)] 2025-01-31 09:48:34,491 DEBUG Processing 815/1035 atomic regions from SNP 244235 to 244835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,563 DEBUG Processing 763/1143 atomic regions from SNP 228879 to 229479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,618 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:34,791 DEBUG Processing 816/1035 atomic regions from SNP 244535 to 245135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,899 DEBUG Processing 764/1143 atomic regions from SNP 229179 to 229779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,090 DEBUG Processing 817/1035 atomic regions from SNP 244835 to 245435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,232 DEBUG Processing 765/1143 atomic regions from SNP 229479 to 230079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,386 DEBUG Processing 818/1035 atomic regions from SNP 245135 to 245735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,561 DEBUG Processing 766/1143 atomic regions from SNP 229779 to 230379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,686 DEBUG Processing 819/1035 atomic regions from SNP 245435 to 246035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,892 DEBUG Processing 767/1143 atomic regions from SNP 230079 to 230679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,990 DEBUG Processing 820/1035 atomic regions from SNP 245735 to 246335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,226 DEBUG Processing 768/1143 atomic regions from SNP 230379 to 230979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,288 DEBUG Processing 821/1035 atomic regions from SNP 246035 to 246635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,567 DEBUG Processing 769/1143 atomic regions from SNP 230679 to 231279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,599 DEBUG Processing 822/1035 atomic regions from SNP 246335 to 246935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,892 DEBUG Processing 770/1143 atomic regions from SNP 230979 to 231579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,893 DEBUG Processing 823/1035 atomic regions from SNP 246635 to 247235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,185 DEBUG Processing 824/1035 atomic regions from SNP 246935 to 247535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,216 DEBUG Processing 771/1143 atomic regions from SNP 231279 to 231879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,478 DEBUG Processing 825/1035 atomic regions from SNP 247235 to 247835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,556 DEBUG Processing 772/1143 atomic regions from SNP 231579 to 232179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,773 DEBUG Processing 826/1035 atomic regions from SNP 247535 to 248135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,894 DEBUG Processing 773/1143 atomic regions from SNP 231879 to 232479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,066 DEBUG Processing 827/1035 atomic regions from SNP 247835 to 248435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,242 DEBUG Processing 774/1143 atomic regions from SNP 232179 to 232779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,370 DEBUG Processing 828/1035 atomic regions from SNP 248135 to 248735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,585 DEBUG Processing 775/1143 atomic regions from SNP 232479 to 233079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,671 DEBUG Processing 829/1035 atomic regions from SNP 248435 to 249035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,909 DEBUG Processing 776/1143 atomic regions from SNP 232779 to 233379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,961 DEBUG Processing 830/1035 atomic regions from SNP 248735 to 249335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,234 DEBUG Processing 777/1143 atomic regions from SNP 233079 to 233679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,262 DEBUG Processing 831/1035 atomic regions from SNP 249035 to 249635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,560 DEBUG Processing 832/1035 atomic regions from SNP 249335 to 249935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,565 DEBUG Processing 778/1143 atomic regions from SNP 233379 to 233979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,856 DEBUG Processing 833/1035 atomic regions from SNP 249635 to 250235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,886 DEBUG Processing 779/1143 atomic regions from SNP 233679 to 234279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,152 DEBUG Processing 834/1035 atomic regions from SNP 249935 to 250535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,220 DEBUG Processing 780/1143 atomic regions from SNP 233979 to 234579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,447 DEBUG Processing 835/1035 atomic regions from SNP 250235 to 250835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,563 DEBUG Processing 781/1143 atomic regions from SNP 234279 to 234879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,739 DEBUG Processing 836/1035 atomic regions from SNP 250535 to 251135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,916 DEBUG Processing 782/1143 atomic regions from SNP 234579 to 235179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,037 DEBUG Processing 837/1035 atomic regions from SNP 250835 to 251435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,255 DEBUG Processing 783/1143 atomic regions from SNP 234879 to 235479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,334 DEBUG Processing 838/1035 atomic regions from SNP 251135 to 251735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,593 DEBUG Processing 784/1143 atomic regions from SNP 235179 to 235779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,631 DEBUG Processing 839/1035 atomic regions from SNP 251435 to 252035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,928 DEBUG Processing 840/1035 atomic regions from SNP 251735 to 252335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,937 DEBUG Processing 785/1143 atomic regions from SNP 235479 to 236079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,221 DEBUG Processing 841/1035 atomic regions from SNP 252035 to 252635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,278 DEBUG Processing 786/1143 atomic regions from SNP 235779 to 236379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,526 DEBUG Processing 842/1035 atomic regions from SNP 252335 to 252935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,643 DEBUG Processing 787/1143 atomic regions from SNP 236079 to 236679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,806 DEBUG Processing 843/1035 atomic regions from SNP 252635 to 253235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,964 DEBUG Processing 788/1143 atomic regions from SNP 236379 to 236979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,079 DEBUG Processing 844/1035 atomic regions from SNP 252935 to 253535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,276 DEBUG Processing 789/1143 atomic regions from SNP 236679 to 237279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,370 DEBUG Processing 845/1035 atomic regions from SNP 253235 to 253835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,583 DEBUG Processing 790/1143 atomic regions from SNP 236979 to 237579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,650 DEBUG Processing 846/1035 atomic regions from SNP 253535 to 254135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,874 DEBUG Processing 791/1143 atomic regions from SNP 237279 to 237879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,933 DEBUG Processing 847/1035 atomic regions from SNP 253835 to 254435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,162 DEBUG Processing 792/1143 atomic regions from SNP 237579 to 238179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,230 DEBUG Processing 848/1035 atomic regions from SNP 254135 to 254735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,461 DEBUG Processing 793/1143 atomic regions from SNP 237879 to 238479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,546 DEBUG Processing 849/1035 atomic regions from SNP 254435 to 255035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,771 DEBUG Processing 794/1143 atomic regions from SNP 238179 to 238779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,840 DEBUG Processing 850/1035 atomic regions from SNP 254735 to 255335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,063 DEBUG Processing 795/1143 atomic regions from SNP 238479 to 239079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,124 DEBUG Processing 851/1035 atomic regions from SNP 255035 to 255635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,355 DEBUG Processing 796/1143 atomic regions from SNP 238779 to 239379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,405 DEBUG Processing 852/1035 atomic regions from SNP 255335 to 255935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,664 DEBUG Processing 797/1143 atomic regions from SNP 239079 to 239679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,687 DEBUG Processing 853/1035 atomic regions from SNP 255635 to 256235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,953 DEBUG Processing 798/1143 atomic regions from SNP 239379 to 239979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,963 DEBUG Processing 854/1035 atomic regions from SNP 255935 to 256535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,238 DEBUG Processing 855/1035 atomic regions from SNP 256235 to 256835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,238 DEBUG Processing 799/1143 atomic regions from SNP 239679 to 240279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,254 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:48:46,516 DEBUG Processing 856/1035 atomic regions from SNP 256535 to 257135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,528 DEBUG Processing 800/1143 atomic regions from SNP 239979 to 240579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,660 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:48:46,795 DEBUG Processing 857/1035 atomic regions from SNP 256835 to 257435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,819 DEBUG Processing 801/1143 atomic regions from SNP 240279 to 240879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,085 DEBUG Processing 858/1035 atomic regions from SNP 257135 to 257735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,116 DEBUG Processing 802/1143 atomic regions from SNP 240579 to 241179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,376 DEBUG Processing 859/1035 atomic regions from SNP 257435 to 258035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,418 DEBUG Processing 803/1143 atomic regions from SNP 240879 to 241479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,664 DEBUG Processing 860/1035 atomic regions from SNP 257735 to 258335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,728 DEBUG Processing 804/1143 atomic regions from SNP 241179 to 241779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,951 DEBUG Processing 861/1035 atomic regions from SNP 258035 to 258635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,029 DEBUG Processing 805/1143 atomic regions from SNP 241479 to 242079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,244 DEBUG Processing 862/1035 atomic regions from SNP 258335 to 258935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,315 DEBUG Processing 806/1143 atomic regions from SNP 241779 to 242379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,529 DEBUG Processing 863/1035 atomic regions from SNP 258635 to 259235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,611 DEBUG Processing 807/1143 atomic regions from SNP 242079 to 242679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,813 DEBUG Processing 864/1035 atomic regions from SNP 258935 to 259535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,911 DEBUG Processing 808/1143 atomic regions from SNP 242379 to 242979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,097 DEBUG Processing 865/1035 atomic regions from SNP 259235 to 259835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,212 DEBUG Processing 809/1143 atomic regions from SNP 242679 to 243279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,388 DEBUG Processing 866/1035 atomic regions from SNP 259535 to 260135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,513 DEBUG Processing 810/1143 atomic regions from SNP 242979 to 243579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,689 DEBUG Processing 867/1035 atomic regions from SNP 259835 to 260435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,802 DEBUG Processing 811/1143 atomic regions from SNP 243279 to 243879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,978 DEBUG Processing 868/1035 atomic regions from SNP 260135 to 260735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,107 DEBUG Processing 812/1143 atomic regions from SNP 243579 to 244179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,273 DEBUG Processing 869/1035 atomic regions from SNP 260435 to 261035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,404 DEBUG Processing 813/1143 atomic regions from SNP 243879 to 244479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,568 DEBUG Processing 870/1035 atomic regions from SNP 260735 to 261335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,701 DEBUG Processing 814/1143 atomic regions from SNP 244179 to 244779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,787 DEBUG Subchromosome time: 292.8197545649018, subchromosome SNPs: 274393 2025-01-31 09:48:50,787 DEBUG Estimated BADs: [1.14, 2.29, 1.14, 2.29, 1.14, 0.29, 0.76, 4.57, 2.29, 0.76, 2.29, 4.57, 6.86, 2.29, 6.86, 4.57, 2.29, 4.57, 2.29, 1.14, 0.38, 1.14, 0.38, 1.14, 0.57] SNP counts: [9755, 2378, 31005, 11479, 13746, 8098, 1841, 5389, 33877, 13524, 8399, 6633, 5361, 6005, 4800, 21598, 21325, 2076, 27005, 3617, 4780, 9285, 7812, 6000, 8605] SNP IDs counts: [9755, 2378, 31005, 11479, 13746, 8098, 1841, 5389, 33877, 13524, 8399, 6633, 5361, 6005, 4800, 21598, 21325, 2076, 27005, 3617, 4780, 9285, 7812, 6000, 8605] Critical gap: 688345bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.80Mbp, 10.13Mbp, 28.57Mbp, 34.99Mbp, 42.85Mbp, 48.02Mbp, 49.13Mbp, 52.14Mbp, 71.40Mbp, 79.29Mbp, 83.96Mbp, 87.50Mbp, 90.36Mbp, 94.35Mbp, 97.01Mbp, 108.86Mbp, 121.16Mbp, 122.24Mbp, 137.13Mbp, 139.12Mbp, 142.07Mbp, 147.13Mbp, 151.60Mbp, 154.85Mbp, 160.04Mbp] 2025-01-31 09:48:50,787 DEBUG chr3 time: 292.82030277501326 s 2025-01-31 09:48:50,852 DEBUG Processing 871/1035 atomic regions from SNP 261035 to 261635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,946 DEBUG chr3: Fitting background model for 25 segments 2025-01-31 09:48:50,993 DEBUG Processing 815/1143 atomic regions from SNP 244479 to 245079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,129 DEBUG Processing 872/1035 atomic regions from SNP 261335 to 261935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,279 DEBUG Processing 816/1143 atomic regions from SNP 244779 to 245379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,415 DEBUG Processing 873/1035 atomic regions from SNP 261635 to 262235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,574 DEBUG Processing 817/1143 atomic regions from SNP 245079 to 245679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,701 DEBUG Processing 874/1035 atomic regions from SNP 261935 to 262535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,879 DEBUG Processing 818/1143 atomic regions from SNP 245379 to 245979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,995 DEBUG Processing 875/1035 atomic regions from SNP 262235 to 262835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,178 DEBUG Processing 819/1143 atomic regions from SNP 245679 to 246279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,287 DEBUG Processing 876/1035 atomic regions from SNP 262535 to 263135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,483 DEBUG Processing 820/1143 atomic regions from SNP 245979 to 246579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,586 DEBUG Processing 877/1035 atomic regions from SNP 262835 to 263435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,779 DEBUG Processing 821/1143 atomic regions from SNP 246279 to 246879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,873 DEBUG Processing 878/1035 atomic regions from SNP 263135 to 263735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,074 DEBUG Processing 822/1143 atomic regions from SNP 246579 to 247179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,164 DEBUG Processing 879/1035 atomic regions from SNP 263435 to 264035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,361 DEBUG Processing 823/1143 atomic regions from SNP 246879 to 247479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,450 DEBUG Processing 880/1035 atomic regions from SNP 263735 to 264335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,654 DEBUG Processing 824/1143 atomic regions from SNP 247179 to 247779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,731 DEBUG Processing 881/1035 atomic regions from SNP 264035 to 264635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,949 DEBUG Processing 825/1143 atomic regions from SNP 247479 to 248079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,020 DEBUG Processing 882/1035 atomic regions from SNP 264335 to 264935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,244 DEBUG Processing 826/1143 atomic regions from SNP 247779 to 248379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,305 DEBUG Processing 883/1035 atomic regions from SNP 264635 to 265235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,536 DEBUG Processing 827/1143 atomic regions from SNP 248079 to 248679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,581 DEBUG Processing 884/1035 atomic regions from SNP 264935 to 265535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,814 DEBUG Processing 828/1143 atomic regions from SNP 248379 to 248979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,848 DEBUG Processing 885/1035 atomic regions from SNP 265235 to 265835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,093 DEBUG Processing 829/1143 atomic regions from SNP 248679 to 249279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,132 DEBUG Processing 886/1035 atomic regions from SNP 265535 to 266135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,384 DEBUG Processing 830/1143 atomic regions from SNP 248979 to 249579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,431 DEBUG Processing 887/1035 atomic regions from SNP 265835 to 266435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,677 DEBUG Processing 831/1143 atomic regions from SNP 249279 to 249879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,718 DEBUG Processing 888/1035 atomic regions from SNP 266135 to 266735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,973 DEBUG Processing 832/1143 atomic regions from SNP 249579 to 250179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,000 DEBUG Processing 889/1035 atomic regions from SNP 266435 to 267035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,284 DEBUG Processing 833/1143 atomic regions from SNP 249879 to 250479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,305 DEBUG Processing 890/1035 atomic regions from SNP 266735 to 267335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,573 DEBUG Processing 834/1143 atomic regions from SNP 250179 to 250779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,600 DEBUG Processing 891/1035 atomic regions from SNP 267035 to 267635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,859 DEBUG Processing 835/1143 atomic regions from SNP 250479 to 251079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,899 DEBUG Processing 892/1035 atomic regions from SNP 267335 to 267935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,154 DEBUG Processing 836/1143 atomic regions from SNP 250779 to 251379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,198 DEBUG Processing 893/1035 atomic regions from SNP 267635 to 268235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,437 DEBUG Processing 837/1143 atomic regions from SNP 251079 to 251679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,495 DEBUG Processing 894/1035 atomic regions from SNP 267935 to 268535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,720 DEBUG Processing 838/1143 atomic regions from SNP 251379 to 251979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,788 DEBUG Processing 895/1035 atomic regions from SNP 268235 to 268835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,021 DEBUG Processing 839/1143 atomic regions from SNP 251679 to 252279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,102 DEBUG Processing 896/1035 atomic regions from SNP 268535 to 269135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,301 DEBUG Processing 840/1143 atomic regions from SNP 251979 to 252579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,402 DEBUG Processing 897/1035 atomic regions from SNP 268835 to 269435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,591 DEBUG Processing 841/1143 atomic regions from SNP 252279 to 252879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,706 DEBUG Processing 898/1035 atomic regions from SNP 269135 to 269735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,886 DEBUG Processing 842/1143 atomic regions from SNP 252579 to 253179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,005 DEBUG Processing 899/1035 atomic regions from SNP 269435 to 270035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,187 DEBUG Processing 843/1143 atomic regions from SNP 252879 to 253479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,309 DEBUG Processing 900/1035 atomic regions from SNP 269735 to 270335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,481 DEBUG Processing 844/1143 atomic regions from SNP 253179 to 253779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,615 DEBUG Processing 901/1035 atomic regions from SNP 270035 to 270635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,778 DEBUG Processing 845/1143 atomic regions from SNP 253479 to 254079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,929 DEBUG Processing 902/1035 atomic regions from SNP 270335 to 270935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,076 DEBUG Processing 846/1143 atomic regions from SNP 253779 to 254379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,239 DEBUG Processing 903/1035 atomic regions from SNP 270635 to 271235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,386 DEBUG Processing 847/1143 atomic regions from SNP 254079 to 254679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,545 DEBUG Processing 904/1035 atomic regions from SNP 270935 to 271535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,681 DEBUG Processing 848/1143 atomic regions from SNP 254379 to 254979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,817 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:49:00,819 DEBUG chr10: Signal quantile: 0.995. signal threshold: 13. Best RMSEA: 0.044 2025-01-31 09:49:00,824 DEBUG Processing 905/1035 atomic regions from SNP 271235 to 271835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,985 DEBUG Processing 849/1143 atomic regions from SNP 254679 to 255279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,120 DEBUG Processing 906/1035 atomic regions from SNP 271535 to 272135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,295 DEBUG Processing 850/1143 atomic regions from SNP 254979 to 255579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,420 DEBUG Processing 907/1035 atomic regions from SNP 271835 to 272435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,598 DEBUG Processing 851/1143 atomic regions from SNP 255279 to 255879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,749 DEBUG Processing 908/1035 atomic regions from SNP 272135 to 272735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,902 DEBUG Processing 852/1143 atomic regions from SNP 255579 to 256179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,068 DEBUG Processing 909/1035 atomic regions from SNP 272435 to 273035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,209 DEBUG Processing 853/1143 atomic regions from SNP 255879 to 256479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,357 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:49:02,359 DEBUG chr7: Signal quantile: 0.995. signal threshold: 16. Best RMSEA: 0.037 2025-01-31 09:49:02,362 DEBUG Processing 910/1035 atomic regions from SNP 272735 to 273335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,512 DEBUG Processing 854/1143 atomic regions from SNP 256179 to 256779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,671 DEBUG Processing 911/1035 atomic regions from SNP 273035 to 273635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,800 DEBUG Processing 855/1143 atomic regions from SNP 256479 to 257079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,959 DEBUG Processing 912/1035 atomic regions from SNP 273335 to 273935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,087 DEBUG Processing 856/1143 atomic regions from SNP 256779 to 257379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,255 DEBUG Processing 913/1035 atomic regions from SNP 273635 to 274235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,351 DEBUG chr10 total SNP count: 227615 2025-01-31 09:49:03,351 DEBUG chr10 length: 130694993 2025-01-31 09:49:03,351 DEBUG ----------------------------------------- 2025-01-31 09:49:03,351 INFO Processing SNPs in chr10 2025-01-31 09:49:03,387 DEBUG Processing 857/1143 atomic regions from SNP 257079 to 257679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,565 DEBUG Processing 914/1035 atomic regions from SNP 273935 to 274535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,591 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 227615)] 2025-01-31 09:49:03,684 DEBUG Processing 858/1143 atomic regions from SNP 257379 to 257979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,753 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:03,863 DEBUG Processing 915/1035 atomic regions from SNP 274235 to 274835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,979 DEBUG Processing 859/1143 atomic regions from SNP 257679 to 258279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,171 DEBUG Processing 916/1035 atomic regions from SNP 274535 to 275135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,273 DEBUG Processing 860/1143 atomic regions from SNP 257979 to 258579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,467 DEBUG Processing 917/1035 atomic regions from SNP 274835 to 275435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,558 DEBUG Processing 861/1143 atomic regions from SNP 258279 to 258879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,754 DEBUG Processing 918/1035 atomic regions from SNP 275135 to 275735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,842 DEBUG Processing 862/1143 atomic regions from SNP 258579 to 259179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,039 DEBUG Processing 919/1035 atomic regions from SNP 275435 to 276035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,059 DEBUG chr7 total SNP count: 236205 2025-01-31 09:49:05,059 DEBUG chr7 length: 145441459 2025-01-31 09:49:05,059 DEBUG ----------------------------------------- 2025-01-31 09:49:05,059 INFO Processing SNPs in chr7 2025-01-31 09:49:05,135 DEBUG Processing 863/1143 atomic regions from SNP 258879 to 259479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,340 DEBUG Processing 920/1035 atomic regions from SNP 275735 to 276335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,423 DEBUG Processing 864/1143 atomic regions from SNP 259179 to 259779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,456 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 21402), (21402, 21443), (21443, 236205)] 2025-01-31 09:49:05,571 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:05,641 DEBUG Processing 921/1035 atomic regions from SNP 276035 to 276635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,705 DEBUG Processing 865/1143 atomic regions from SNP 259479 to 260079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,945 DEBUG Processing 922/1035 atomic regions from SNP 276335 to 276935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,989 DEBUG Processing 866/1143 atomic regions from SNP 259779 to 260379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,240 DEBUG Processing 923/1035 atomic regions from SNP 276635 to 277235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,271 DEBUG Processing 867/1143 atomic regions from SNP 260079 to 260679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,535 DEBUG Processing 924/1035 atomic regions from SNP 276935 to 277535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,555 DEBUG Processing 868/1143 atomic regions from SNP 260379 to 260979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,823 DEBUG Processing 925/1035 atomic regions from SNP 277235 to 277835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,837 DEBUG Processing 869/1143 atomic regions from SNP 260679 to 261279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,116 DEBUG Processing 870/1143 atomic regions from SNP 260979 to 261579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,119 DEBUG Processing 926/1035 atomic regions from SNP 277535 to 278135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,158 DEBUG Segmenting atomic regions: 2025-01-31 09:49:07,279 DEBUG Processing 1/866 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,402 DEBUG Processing 871/1143 atomic regions from SNP 261279 to 261879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,422 DEBUG Processing 927/1035 atomic regions from SNP 277835 to 278435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,515 DEBUG Processing 2/866 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,683 DEBUG Processing 872/1143 atomic regions from SNP 261579 to 262179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,715 DEBUG Processing 928/1035 atomic regions from SNP 278135 to 278735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,760 DEBUG Processing 3/866 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,983 DEBUG Processing 873/1143 atomic regions from SNP 261879 to 262479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,004 DEBUG Processing 4/866 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,010 DEBUG Processing 929/1035 atomic regions from SNP 278435 to 279035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,194 DEBUG Segmenting atomic regions: 2025-01-31 09:49:08,254 DEBUG Processing 5/866 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,296 DEBUG Processing 874/1143 atomic regions from SNP 262179 to 262779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,301 DEBUG Processing 1/70 atomic regions from SNP 0 to 602 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:08,315 DEBUG Processing 930/1035 atomic regions from SNP 278735 to 279335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,508 DEBUG Processing 6/866 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,549 DEBUG Processing 2/70 atomic regions from SNP 302 to 904 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:08,616 DEBUG Processing 875/1143 atomic regions from SNP 262479 to 263079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,634 DEBUG Processing 931/1035 atomic regions from SNP 279035 to 279635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,752 DEBUG Processing 7/866 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,783 DEBUG Processing 3/70 atomic regions from SNP 604 to 1206 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:08,916 DEBUG Processing 876/1143 atomic regions from SNP 262779 to 263379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,937 DEBUG Processing 932/1035 atomic regions from SNP 279335 to 279935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,998 DEBUG Processing 8/866 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,037 DEBUG Processing 4/70 atomic regions from SNP 906 to 1508 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:09,223 DEBUG Processing 877/1143 atomic regions from SNP 263079 to 263679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,239 DEBUG Processing 933/1035 atomic regions from SNP 279635 to 280235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,250 DEBUG Processing 9/866 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,285 DEBUG Processing 5/70 atomic regions from SNP 1208 to 1810 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:09,504 DEBUG Processing 10/866 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,525 DEBUG Processing 6/70 atomic regions from SNP 1510 to 2112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:09,531 DEBUG Processing 878/1143 atomic regions from SNP 263379 to 263979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,546 DEBUG Processing 934/1035 atomic regions from SNP 279935 to 280535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,754 DEBUG Processing 11/866 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,768 DEBUG Processing 7/70 atomic regions from SNP 1812 to 2414 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:09,837 DEBUG Processing 879/1143 atomic regions from SNP 263679 to 264279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,846 DEBUG Processing 935/1035 atomic regions from SNP 280235 to 280835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,014 DEBUG Processing 12/866 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,024 DEBUG Processing 8/70 atomic regions from SNP 2114 to 2716 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:10,131 DEBUG Processing 880/1143 atomic regions from SNP 263979 to 264579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,131 DEBUG Processing 936/1035 atomic regions from SNP 280535 to 281135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,266 DEBUG Processing 13/866 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,287 DEBUG Processing 9/70 atomic regions from SNP 2416 to 3018 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:10,425 DEBUG Processing 937/1035 atomic regions from SNP 280835 to 281435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,433 DEBUG Processing 881/1143 atomic regions from SNP 264279 to 264879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,538 DEBUG Processing 14/866 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,549 DEBUG Processing 10/70 atomic regions from SNP 2718 to 3320 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:10,706 DEBUG Processing 938/1035 atomic regions from SNP 281135 to 281735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,723 DEBUG Processing 882/1143 atomic regions from SNP 264579 to 265179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,781 DEBUG Processing 15/866 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,800 DEBUG Processing 11/70 atomic regions from SNP 3020 to 3622 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:10,978 DEBUG Processing 939/1035 atomic regions from SNP 281435 to 282035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,013 DEBUG Processing 883/1143 atomic regions from SNP 264879 to 265479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,020 DEBUG Processing 16/866 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,028 DEBUG Processing 12/70 atomic regions from SNP 3322 to 3924 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:11,254 DEBUG Processing 940/1035 atomic regions from SNP 281735 to 282335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,259 DEBUG Processing 13/70 atomic regions from SNP 3624 to 4226 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:11,265 DEBUG Processing 17/866 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,306 DEBUG Processing 884/1143 atomic regions from SNP 265179 to 265779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,490 DEBUG Processing 14/70 atomic regions from SNP 3926 to 4528 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:11,511 DEBUG Processing 18/866 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,528 DEBUG Processing 941/1035 atomic regions from SNP 282035 to 282635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,596 DEBUG Processing 885/1143 atomic regions from SNP 265479 to 266079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,724 DEBUG Processing 15/70 atomic regions from SNP 4228 to 4830 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:11,756 DEBUG Processing 19/866 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,808 DEBUG Processing 942/1035 atomic regions from SNP 282335 to 282935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,892 DEBUG Processing 886/1143 atomic regions from SNP 265779 to 266379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,961 DEBUG Processing 16/70 atomic regions from SNP 4530 to 5132 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:12,004 DEBUG Processing 20/866 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,083 DEBUG Processing 943/1035 atomic regions from SNP 282635 to 283235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,192 DEBUG Processing 887/1143 atomic regions from SNP 266079 to 266679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,232 DEBUG Processing 17/70 atomic regions from SNP 4832 to 5434 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:12,262 DEBUG Processing 21/866 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,375 DEBUG Processing 944/1035 atomic regions from SNP 282935 to 283535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,485 DEBUG Processing 18/70 atomic regions from SNP 5134 to 5736 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:12,497 DEBUG Processing 888/1143 atomic regions from SNP 266379 to 266979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,513 DEBUG Processing 22/866 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,639 DEBUG Processing 945/1035 atomic regions from SNP 283235 to 283835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,716 DEBUG Processing 19/70 atomic regions from SNP 5436 to 6038 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:12,752 DEBUG Processing 23/866 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,783 DEBUG Processing 889/1143 atomic regions from SNP 266679 to 267279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,906 DEBUG Processing 946/1035 atomic regions from SNP 283535 to 284135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,967 DEBUG Processing 20/70 atomic regions from SNP 5738 to 6340 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:12,992 DEBUG Processing 24/866 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,071 DEBUG Processing 890/1143 atomic regions from SNP 266979 to 267579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,179 DEBUG Processing 947/1035 atomic regions from SNP 283835 to 284435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,198 DEBUG Processing 21/70 atomic regions from SNP 6040 to 6642 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:13,228 DEBUG Processing 25/866 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,358 DEBUG Processing 891/1143 atomic regions from SNP 267279 to 267879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,429 DEBUG Processing 22/70 atomic regions from SNP 6342 to 6944 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:13,456 DEBUG Processing 948/1035 atomic regions from SNP 284135 to 284735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,469 DEBUG Processing 26/866 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,641 DEBUG Processing 892/1143 atomic regions from SNP 267579 to 268179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,661 DEBUG Processing 23/70 atomic regions from SNP 6644 to 7246 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:13,713 DEBUG Processing 27/866 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,735 DEBUG Processing 949/1035 atomic regions from SNP 284435 to 285035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,895 DEBUG Processing 24/70 atomic regions from SNP 6946 to 7548 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:13,924 DEBUG Processing 893/1143 atomic regions from SNP 267879 to 268479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,971 DEBUG Processing 28/866 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,026 DEBUG Processing 950/1035 atomic regions from SNP 284735 to 285335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,120 DEBUG Processing 25/70 atomic regions from SNP 7248 to 7850 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:14,210 DEBUG Processing 894/1143 atomic regions from SNP 268179 to 268779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,217 DEBUG Processing 29/866 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,289 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:49:14,294 DEBUG Processing 951/1035 atomic regions from SNP 285035 to 285635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,339 DEBUG Processing 26/70 atomic regions from SNP 7550 to 8152 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:14,453 DEBUG Processing 30/866 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,492 DEBUG Processing 895/1143 atomic regions from SNP 268479 to 269079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,569 DEBUG Processing 27/70 atomic regions from SNP 7852 to 8454 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:14,573 DEBUG Processing 952/1035 atomic regions from SNP 285335 to 285935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,693 DEBUG Processing 31/866 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,784 DEBUG Processing 896/1143 atomic regions from SNP 268779 to 269379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,818 DEBUG Processing 28/70 atomic regions from SNP 8154 to 8756 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:14,854 DEBUG Processing 953/1035 atomic regions from SNP 285635 to 286235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,940 DEBUG Processing 32/866 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,048 DEBUG Processing 29/70 atomic regions from SNP 8456 to 9058 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:15,089 DEBUG Processing 897/1143 atomic regions from SNP 269079 to 269679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,132 DEBUG Processing 954/1035 atomic regions from SNP 285935 to 286535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,183 DEBUG Processing 33/866 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,265 DEBUG Processing 30/70 atomic regions from SNP 8758 to 9360 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:15,398 DEBUG Processing 898/1143 atomic regions from SNP 269379 to 269979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,398 DEBUG Processing 955/1035 atomic regions from SNP 286235 to 286835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,424 DEBUG Processing 34/866 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,482 DEBUG Processing 31/70 atomic regions from SNP 9060 to 9662 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:15,677 DEBUG Processing 35/866 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,686 DEBUG Processing 956/1035 atomic regions from SNP 286535 to 287135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,717 DEBUG Processing 32/70 atomic regions from SNP 9362 to 9963 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:15,723 DEBUG Processing 899/1143 atomic regions from SNP 269679 to 270279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,927 DEBUG Processing 36/866 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,954 DEBUG Processing 33/70 atomic regions from SNP 9663 to 10264 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:15,966 DEBUG Processing 957/1035 atomic regions from SNP 286835 to 287435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,031 DEBUG Processing 900/1143 atomic regions from SNP 269979 to 270579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,165 DEBUG Processing 37/866 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,182 DEBUG Processing 34/70 atomic regions from SNP 9964 to 10565 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:16,242 DEBUG Processing 958/1035 atomic regions from SNP 287135 to 287735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,335 DEBUG Processing 901/1143 atomic regions from SNP 270279 to 270879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,408 DEBUG Processing 38/866 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,409 DEBUG Processing 35/70 atomic regions from SNP 10265 to 10866 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:16,514 DEBUG Processing 959/1035 atomic regions from SNP 287435 to 288035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,650 DEBUG Processing 902/1143 atomic regions from SNP 270579 to 271179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,652 DEBUG Processing 36/70 atomic regions from SNP 10566 to 11167 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:16,665 DEBUG Processing 39/866 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,778 DEBUG Processing 960/1035 atomic regions from SNP 287735 to 288335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,910 DEBUG Processing 37/70 atomic regions from SNP 10867 to 11468 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:16,913 DEBUG Processing 40/866 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,963 DEBUG Processing 903/1143 atomic regions from SNP 270879 to 271479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,050 DEBUG Processing 961/1035 atomic regions from SNP 288035 to 288635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,154 DEBUG Processing 38/70 atomic regions from SNP 11168 to 11769 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:17,158 DEBUG Processing 41/866 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,276 DEBUG Processing 904/1143 atomic regions from SNP 271179 to 271779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,328 DEBUG Processing 962/1035 atomic regions from SNP 288335 to 288935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,384 DEBUG Processing 39/70 atomic regions from SNP 11469 to 12070 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:17,403 DEBUG Processing 42/866 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,592 DEBUG Processing 905/1143 atomic regions from SNP 271479 to 272079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,617 DEBUG Processing 40/70 atomic regions from SNP 11770 to 12371 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:17,627 DEBUG Processing 963/1035 atomic regions from SNP 288635 to 289235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,645 DEBUG Processing 43/866 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,858 DEBUG Processing 41/70 atomic regions from SNP 12071 to 12672 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:17,894 DEBUG Processing 44/866 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,913 DEBUG Processing 906/1143 atomic regions from SNP 271779 to 272379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,932 DEBUG Processing 964/1035 atomic regions from SNP 288935 to 289535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,092 DEBUG Processing 42/70 atomic regions from SNP 12372 to 12973 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:18,137 DEBUG Processing 45/866 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,219 DEBUG Processing 965/1035 atomic regions from SNP 289235 to 289835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,225 DEBUG Processing 907/1143 atomic regions from SNP 272079 to 272679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,320 DEBUG Processing 43/70 atomic regions from SNP 12673 to 13274 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:18,384 DEBUG Processing 46/866 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,501 DEBUG Processing 966/1035 atomic regions from SNP 289535 to 290135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,537 DEBUG Processing 908/1143 atomic regions from SNP 272379 to 272979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,547 DEBUG Processing 44/70 atomic regions from SNP 12974 to 13575 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:18,628 DEBUG Processing 47/866 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,778 DEBUG Processing 45/70 atomic regions from SNP 13275 to 13876 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:18,782 DEBUG Processing 967/1035 atomic regions from SNP 289835 to 290435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,850 DEBUG Processing 909/1143 atomic regions from SNP 272679 to 273279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,876 DEBUG Processing 48/866 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,008 DEBUG Processing 46/70 atomic regions from SNP 13576 to 14177 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,073 DEBUG Processing 968/1035 atomic regions from SNP 290135 to 290735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,119 DEBUG Processing 49/866 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,164 DEBUG Processing 910/1143 atomic regions from SNP 272979 to 273579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,233 DEBUG Processing 47/70 atomic regions from SNP 13877 to 14478 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,356 DEBUG Processing 969/1035 atomic regions from SNP 290435 to 291035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,367 DEBUG Processing 50/866 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,461 DEBUG Processing 48/70 atomic regions from SNP 14178 to 14779 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,468 DEBUG Processing 911/1143 atomic regions from SNP 273279 to 273879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,615 DEBUG Processing 51/866 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,654 DEBUG Processing 970/1035 atomic regions from SNP 290735 to 291335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,710 DEBUG Processing 49/70 atomic regions from SNP 14479 to 15080 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,758 DEBUG Processing 912/1143 atomic regions from SNP 273579 to 274179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,854 DEBUG Processing 52/866 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,940 DEBUG Processing 971/1035 atomic regions from SNP 291035 to 291635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,965 DEBUG Processing 50/70 atomic regions from SNP 14780 to 15381 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,061 DEBUG Processing 913/1143 atomic regions from SNP 273879 to 274479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,096 DEBUG Processing 53/866 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,214 DEBUG Processing 51/70 atomic regions from SNP 15081 to 15682 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,241 DEBUG Processing 972/1035 atomic regions from SNP 291335 to 291935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,335 DEBUG Processing 54/866 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,374 DEBUG Processing 914/1143 atomic regions from SNP 274179 to 274779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,464 DEBUG Processing 52/70 atomic regions from SNP 15382 to 15983 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,537 DEBUG Processing 973/1035 atomic regions from SNP 291635 to 292235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,581 DEBUG Processing 55/866 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,669 DEBUG Processing 915/1143 atomic regions from SNP 274479 to 275079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,694 DEBUG Processing 53/70 atomic regions from SNP 15683 to 16284 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,819 DEBUG Processing 56/866 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,829 DEBUG Processing 974/1035 atomic regions from SNP 291935 to 292535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,924 DEBUG Processing 54/70 atomic regions from SNP 15984 to 16585 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,950 DEBUG Processing 916/1143 atomic regions from SNP 274779 to 275379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,056 DEBUG Processing 57/866 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,120 DEBUG Processing 975/1035 atomic regions from SNP 292235 to 292835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:21,173 DEBUG Processing 55/70 atomic regions from SNP 16285 to 16886 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,231 DEBUG Processing 917/1143 atomic regions from SNP 275079 to 275679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,293 DEBUG Processing 58/866 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,408 DEBUG Processing 976/1035 atomic regions from SNP 292535 to 293135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:21,417 DEBUG Processing 56/70 atomic regions from SNP 16586 to 17187 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,523 DEBUG Processing 59/866 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,523 DEBUG Processing 918/1143 atomic regions from SNP 275379 to 275979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,641 DEBUG Processing 57/70 atomic regions from SNP 16887 to 17488 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,697 DEBUG Processing 977/1035 atomic regions from SNP 292835 to 293435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:21,756 DEBUG Processing 60/866 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,804 DEBUG Processing 919/1143 atomic regions from SNP 275679 to 276279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,865 DEBUG Processing 58/70 atomic regions from SNP 17188 to 17789 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,986 DEBUG Processing 978/1035 atomic regions from SNP 293135 to 293735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:21,991 DEBUG Processing 61/866 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,085 DEBUG Processing 920/1143 atomic regions from SNP 275979 to 276579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,087 DEBUG Processing 59/70 atomic regions from SNP 17489 to 18090 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,226 DEBUG Processing 62/866 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,279 DEBUG Processing 979/1035 atomic regions from SNP 293435 to 294035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:22,314 DEBUG Processing 60/70 atomic regions from SNP 17790 to 18391 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,370 DEBUG Processing 921/1143 atomic regions from SNP 276279 to 276879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,463 DEBUG Processing 63/866 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,552 DEBUG Processing 61/70 atomic regions from SNP 18091 to 18692 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,580 DEBUG Processing 980/1035 atomic regions from SNP 293735 to 294335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:22,655 DEBUG Processing 922/1143 atomic regions from SNP 276579 to 277179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,694 DEBUG Processing 64/866 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,781 DEBUG Processing 62/70 atomic regions from SNP 18392 to 18993 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,878 DEBUG Processing 981/1035 atomic regions from SNP 294035 to 294635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:22,928 DEBUG Processing 65/866 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,943 DEBUG Processing 923/1143 atomic regions from SNP 276879 to 277479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,005 DEBUG Processing 63/70 atomic regions from SNP 18693 to 19294 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,174 DEBUG Processing 982/1035 atomic regions from SNP 294335 to 294935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:23,174 DEBUG Processing 66/866 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,232 DEBUG Processing 924/1143 atomic regions from SNP 277179 to 277779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,234 DEBUG Processing 64/70 atomic regions from SNP 18994 to 19595 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,417 DEBUG Processing 67/866 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,471 DEBUG Processing 983/1035 atomic regions from SNP 294635 to 295235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:23,488 DEBUG Processing 65/70 atomic regions from SNP 19295 to 19896 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,532 DEBUG Processing 925/1143 atomic regions from SNP 277479 to 278079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,653 DEBUG Processing 68/866 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,761 DEBUG Processing 66/70 atomic regions from SNP 19596 to 20197 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,777 DEBUG Processing 984/1035 atomic regions from SNP 294935 to 295535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:23,826 DEBUG Processing 926/1143 atomic regions from SNP 277779 to 278379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,879 DEBUG Processing 69/866 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,040 DEBUG Processing 67/70 atomic regions from SNP 19897 to 20498 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,071 DEBUG Processing 985/1035 atomic regions from SNP 295235 to 295835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,115 DEBUG Processing 70/866 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,118 DEBUG Processing 927/1143 atomic regions from SNP 278079 to 278679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,299 DEBUG Processing 68/70 atomic regions from SNP 20198 to 20799 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,353 DEBUG Processing 71/866 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,366 DEBUG Processing 986/1035 atomic regions from SNP 295535 to 296135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,411 DEBUG Processing 928/1143 atomic regions from SNP 278379 to 278979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,556 DEBUG Processing 69/70 atomic regions from SNP 20499 to 21100 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,595 DEBUG Processing 72/866 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,682 DEBUG Processing 987/1035 atomic regions from SNP 295835 to 296435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,725 DEBUG Processing 929/1143 atomic regions from SNP 278679 to 279279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,811 DEBUG Processing 70/70 atomic regions from SNP 20800 to 21401 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,825 DEBUG Processing 73/866 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,936 DEBUG Unique SNPs positions in subchromosome 1: 21402 2025-01-31 09:49:24,969 DEBUG Subchromosome time: 19.398207710008137, subchromosome SNPs: 21402 2025-01-31 09:49:24,983 DEBUG Processing 988/1035 atomic regions from SNP 296135 to 296735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,024 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:25,034 DEBUG Processing 930/1143 atomic regions from SNP 278979 to 279579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,064 DEBUG Processing 74/866 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,286 DEBUG Processing 989/1035 atomic regions from SNP 296435 to 297035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,325 DEBUG Processing 75/866 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,343 DEBUG Processing 931/1143 atomic regions from SNP 279279 to 279879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,582 DEBUG Processing 76/866 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,603 DEBUG Processing 990/1035 atomic regions from SNP 296735 to 297335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,646 DEBUG Processing 932/1143 atomic regions from SNP 279579 to 280179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,824 DEBUG Processing 77/866 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,914 DEBUG Processing 991/1035 atomic regions from SNP 297035 to 297635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,941 DEBUG Processing 933/1143 atomic regions from SNP 279879 to 280479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,057 DEBUG Processing 78/866 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,216 DEBUG Processing 992/1035 atomic regions from SNP 297335 to 297935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:26,242 DEBUG Processing 934/1143 atomic regions from SNP 280179 to 280779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,293 DEBUG Processing 79/866 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,522 DEBUG Processing 993/1035 atomic regions from SNP 297635 to 298235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:26,532 DEBUG Processing 80/866 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,549 DEBUG Processing 935/1143 atomic regions from SNP 280479 to 281079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,781 DEBUG Processing 81/866 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,826 DEBUG Processing 994/1035 atomic regions from SNP 297935 to 298535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:26,865 DEBUG Processing 936/1143 atomic regions from SNP 280779 to 281379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,029 DEBUG Processing 82/866 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,120 DEBUG Processing 995/1035 atomic regions from SNP 298235 to 298835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:27,180 DEBUG Processing 937/1143 atomic regions from SNP 281079 to 281679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,271 DEBUG Processing 83/866 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,398 DEBUG Processing 996/1035 atomic regions from SNP 298535 to 299135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:27,465 DEBUG Processing 938/1143 atomic regions from SNP 281379 to 281979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,510 DEBUG Processing 84/866 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,678 DEBUG Processing 997/1035 atomic regions from SNP 298835 to 299435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:27,760 DEBUG Processing 939/1143 atomic regions from SNP 281679 to 282279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,761 DEBUG Processing 85/866 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,902 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:49:27,903 DEBUG chr8: Signal quantile: 0.994. signal threshold: 14. Best RMSEA: 0.044 2025-01-31 09:49:27,957 DEBUG Processing 998/1035 atomic regions from SNP 299135 to 299735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,004 DEBUG Processing 86/866 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,059 DEBUG Processing 940/1143 atomic regions from SNP 281979 to 282579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,233 DEBUG Processing 999/1035 atomic regions from SNP 299435 to 300035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,245 DEBUG Processing 87/866 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,368 DEBUG Processing 941/1143 atomic regions from SNP 282279 to 282879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,487 DEBUG Processing 88/866 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,510 DEBUG Processing 1000/1035 atomic regions from SNP 299735 to 300335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,663 DEBUG Processing 942/1143 atomic regions from SNP 282579 to 283179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,728 DEBUG Processing 89/866 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,786 DEBUG Processing 1001/1035 atomic regions from SNP 300035 to 300635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,952 DEBUG Processing 943/1143 atomic regions from SNP 282879 to 283479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,971 DEBUG Processing 90/866 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,059 DEBUG Processing 1002/1035 atomic regions from SNP 300335 to 300935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,220 DEBUG Processing 91/866 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,249 DEBUG Processing 944/1143 atomic regions from SNP 283179 to 283779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,337 DEBUG Processing 1003/1035 atomic regions from SNP 300635 to 301235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,470 DEBUG Processing 92/866 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,559 DEBUG Processing 945/1143 atomic regions from SNP 283479 to 284079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,618 DEBUG Processing 1004/1035 atomic regions from SNP 300935 to 301535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,704 DEBUG Processing 93/866 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,845 DEBUG Processing 946/1143 atomic regions from SNP 283779 to 284379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,891 DEBUG Processing 1005/1035 atomic regions from SNP 301235 to 301835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,942 DEBUG Processing 94/866 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,129 DEBUG Processing 947/1143 atomic regions from SNP 284079 to 284679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,184 DEBUG Processing 1006/1035 atomic regions from SNP 301535 to 302135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:30,185 DEBUG Processing 95/866 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,273 DEBUG chr8 total SNP count: 223244 2025-01-31 09:49:30,273 DEBUG chr8 length: 129401213 2025-01-31 09:49:30,273 DEBUG ----------------------------------------- 2025-01-31 09:49:30,273 INFO Processing SNPs in chr8 2025-01-31 09:49:30,417 DEBUG Processing 948/1143 atomic regions from SNP 284379 to 284979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,433 DEBUG Processing 96/866 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,481 DEBUG Processing 1007/1035 atomic regions from SNP 301835 to 302435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:30,512 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 223244)] 2025-01-31 09:49:30,682 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:30,689 DEBUG Processing 97/866 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,721 DEBUG Processing 949/1143 atomic regions from SNP 284679 to 285279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,774 DEBUG Processing 1008/1035 atomic regions from SNP 302135 to 302735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:30,931 DEBUG Processing 98/866 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,017 DEBUG Processing 950/1143 atomic regions from SNP 284979 to 285579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,052 DEBUG Processing 1009/1035 atomic regions from SNP 302435 to 303035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:31,163 DEBUG Processing 99/866 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,308 DEBUG Processing 951/1143 atomic regions from SNP 285279 to 285879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,332 DEBUG Processing 1010/1035 atomic regions from SNP 302735 to 303335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:31,412 DEBUG Processing 100/866 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,600 DEBUG Processing 952/1143 atomic regions from SNP 285579 to 286179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,612 DEBUG Processing 1011/1035 atomic regions from SNP 303035 to 303635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:31,646 DEBUG Processing 101/866 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,889 DEBUG Processing 102/866 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,891 DEBUG Processing 953/1143 atomic regions from SNP 285879 to 286479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,892 DEBUG Processing 1012/1035 atomic regions from SNP 303335 to 303935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:31,910 DEBUG Segmenting atomic regions: 2025-01-31 09:49:32,016 DEBUG Processing 1/757 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,137 DEBUG Processing 103/866 atomic regions from SNP 30702 to 31303 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,174 DEBUG Processing 1013/1035 atomic regions from SNP 303635 to 304235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:32,194 DEBUG Processing 954/1143 atomic regions from SNP 286179 to 286779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,242 DEBUG Processing 2/757 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,375 DEBUG Processing 104/866 atomic regions from SNP 31003 to 31604 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,455 DEBUG Processing 1014/1035 atomic regions from SNP 303935 to 304535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:32,476 DEBUG Processing 3/757 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,503 DEBUG Processing 955/1143 atomic regions from SNP 286479 to 287079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,609 DEBUG Processing 105/866 atomic regions from SNP 31304 to 31905 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,712 DEBUG Processing 4/757 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,739 DEBUG Processing 1015/1035 atomic regions from SNP 304235 to 304835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:32,802 DEBUG Processing 956/1143 atomic regions from SNP 286779 to 287379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,839 DEBUG Processing 106/866 atomic regions from SNP 31605 to 32206 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,943 DEBUG Processing 5/757 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,022 DEBUG Processing 1016/1035 atomic regions from SNP 304535 to 305135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,079 DEBUG Processing 107/866 atomic regions from SNP 31906 to 32507 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,090 DEBUG Processing 957/1143 atomic regions from SNP 287079 to 287679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,172 DEBUG Processing 6/757 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,298 DEBUG Processing 1017/1035 atomic regions from SNP 304835 to 305435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,322 DEBUG Processing 108/866 atomic regions from SNP 32207 to 32808 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,378 DEBUG Processing 958/1143 atomic regions from SNP 287379 to 287979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,401 DEBUG Processing 7/757 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,561 DEBUG Processing 109/866 atomic regions from SNP 32508 to 33109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,570 DEBUG Processing 1018/1035 atomic regions from SNP 305135 to 305735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,644 DEBUG Processing 8/757 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,690 DEBUG Processing 959/1143 atomic regions from SNP 287679 to 288279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,800 DEBUG Processing 110/866 atomic regions from SNP 32809 to 33410 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,847 DEBUG Processing 1019/1035 atomic regions from SNP 305435 to 306035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,899 DEBUG Processing 9/757 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,003 DEBUG Processing 960/1143 atomic regions from SNP 287979 to 288579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,034 DEBUG Processing 111/866 atomic regions from SNP 33110 to 33711 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,131 DEBUG Processing 10/757 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,147 DEBUG Processing 1020/1035 atomic regions from SNP 305735 to 306335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:34,270 DEBUG Processing 112/866 atomic regions from SNP 33411 to 34012 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,315 DEBUG Processing 961/1143 atomic regions from SNP 288279 to 288879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,365 DEBUG Processing 11/757 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,433 DEBUG Processing 1021/1035 atomic regions from SNP 306035 to 306635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:34,509 DEBUG Processing 113/866 atomic regions from SNP 33712 to 34313 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,592 DEBUG Processing 12/757 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,630 DEBUG Processing 962/1143 atomic regions from SNP 288579 to 289179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,701 DEBUG Processing 1022/1035 atomic regions from SNP 306335 to 306935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:34,740 DEBUG Processing 114/866 atomic regions from SNP 34013 to 34614 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,819 DEBUG Processing 13/757 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,940 DEBUG Processing 963/1143 atomic regions from SNP 288879 to 289479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,972 DEBUG Processing 1023/1035 atomic regions from SNP 306635 to 307235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:34,973 DEBUG Processing 115/866 atomic regions from SNP 34314 to 34915 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,044 DEBUG Processing 14/757 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,211 DEBUG Processing 116/866 atomic regions from SNP 34615 to 35216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,258 DEBUG Processing 964/1143 atomic regions from SNP 289179 to 289779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,266 DEBUG Processing 1024/1035 atomic regions from SNP 306935 to 307535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:35,274 DEBUG Processing 15/757 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,446 DEBUG Processing 117/866 atomic regions from SNP 34916 to 35516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,508 DEBUG Processing 16/757 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,562 DEBUG Processing 1025/1035 atomic regions from SNP 307235 to 307835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:35,580 DEBUG Processing 965/1143 atomic regions from SNP 289479 to 290079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,673 DEBUG Processing 118/866 atomic regions from SNP 35216 to 35816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,742 DEBUG Processing 17/757 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,847 DEBUG Processing 1026/1035 atomic regions from SNP 307535 to 308135 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:35,891 DEBUG Processing 966/1143 atomic regions from SNP 289779 to 290379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,903 DEBUG Processing 119/866 atomic regions from SNP 35516 to 36116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,966 DEBUG Processing 18/757 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,115 DEBUG Processing 1027/1035 atomic regions from SNP 307835 to 308435 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:36,137 DEBUG Processing 120/866 atomic regions from SNP 35816 to 36416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,191 DEBUG Processing 19/757 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,192 DEBUG Processing 967/1143 atomic regions from SNP 290079 to 290679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,370 DEBUG Processing 121/866 atomic regions from SNP 36116 to 36716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,382 DEBUG Processing 1028/1035 atomic regions from SNP 308135 to 308735 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:36,420 DEBUG Processing 20/757 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,485 DEBUG Processing 968/1143 atomic regions from SNP 290379 to 290979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,599 DEBUG Processing 122/866 atomic regions from SNP 36416 to 37016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,645 DEBUG Processing 21/757 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,651 DEBUG Processing 1029/1035 atomic regions from SNP 308435 to 309035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:36,770 DEBUG Processing 969/1143 atomic regions from SNP 290679 to 291279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,827 DEBUG Processing 123/866 atomic regions from SNP 36716 to 37316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,865 DEBUG Processing 22/757 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,920 DEBUG Processing 1030/1035 atomic regions from SNP 308735 to 309335 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:37,053 DEBUG Processing 970/1143 atomic regions from SNP 290979 to 291579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,061 DEBUG Processing 124/866 atomic regions from SNP 37016 to 37616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,087 DEBUG Processing 23/757 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,189 DEBUG Processing 1031/1035 atomic regions from SNP 309035 to 309635 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:37,299 DEBUG Processing 125/866 atomic regions from SNP 37316 to 37916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,312 DEBUG Processing 24/757 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,341 DEBUG Processing 971/1143 atomic regions from SNP 291279 to 291879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,457 DEBUG Processing 1032/1035 atomic regions from SNP 309335 to 309935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:37,539 DEBUG Processing 25/757 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,539 DEBUG Processing 126/866 atomic regions from SNP 37616 to 38216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,642 DEBUG Processing 972/1143 atomic regions from SNP 291579 to 292179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,734 DEBUG Processing 1033/1035 atomic regions from SNP 309635 to 310235 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:37,763 DEBUG Processing 26/757 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,774 DEBUG Processing 127/866 atomic regions from SNP 37916 to 38516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,949 DEBUG Processing 973/1143 atomic regions from SNP 291879 to 292479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,993 DEBUG Processing 27/757 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,011 DEBUG Processing 128/866 atomic regions from SNP 38216 to 38816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,013 DEBUG Processing 1034/1035 atomic regions from SNP 309935 to 310535 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:38,230 DEBUG Processing 28/757 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,256 DEBUG Processing 129/866 atomic regions from SNP 38516 to 39116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,260 DEBUG Processing 974/1143 atomic regions from SNP 292179 to 292779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,293 DEBUG Processing 1035/1035 atomic regions from SNP 310235 to 310835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:38,425 DEBUG Unique SNPs positions in subchromosome 1: 310836 2025-01-31 09:49:38,463 DEBUG Processing 29/757 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,499 DEBUG Processing 130/866 atomic regions from SNP 38816 to 39416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,566 DEBUG Processing 975/1143 atomic regions from SNP 292479 to 293079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,692 DEBUG Processing 30/757 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,733 DEBUG Processing 131/866 atomic regions from SNP 39116 to 39716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,856 DEBUG Processing 976/1143 atomic regions from SNP 292779 to 293379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,913 DEBUG Processing 31/757 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,963 DEBUG Processing 132/866 atomic regions from SNP 39416 to 40016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,136 DEBUG Processing 32/757 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,148 DEBUG Processing 977/1143 atomic regions from SNP 293079 to 293679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,195 DEBUG Processing 133/866 atomic regions from SNP 39716 to 40316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,360 DEBUG Processing 33/757 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,426 DEBUG Processing 134/866 atomic regions from SNP 40016 to 40616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,445 DEBUG Processing 978/1143 atomic regions from SNP 293379 to 293979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,583 DEBUG Processing 34/757 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,656 DEBUG Processing 135/866 atomic regions from SNP 40316 to 40916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,743 DEBUG Processing 979/1143 atomic regions from SNP 293679 to 294279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,803 DEBUG Processing 35/757 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,884 DEBUG Processing 136/866 atomic regions from SNP 40616 to 41216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,028 DEBUG Processing 36/757 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,035 DEBUG Processing 980/1143 atomic regions from SNP 293979 to 294579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,109 DEBUG Processing 137/866 atomic regions from SNP 40916 to 41516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,253 DEBUG Processing 37/757 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,323 DEBUG Processing 981/1143 atomic regions from SNP 294279 to 294879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,340 DEBUG Processing 138/866 atomic regions from SNP 41216 to 41816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,476 DEBUG Processing 38/757 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,570 DEBUG Processing 139/866 atomic regions from SNP 41516 to 42116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,604 DEBUG Processing 982/1143 atomic regions from SNP 294579 to 295179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,701 DEBUG Processing 39/757 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,812 DEBUG Processing 140/866 atomic regions from SNP 41816 to 42416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,893 DEBUG Processing 983/1143 atomic regions from SNP 294879 to 295479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,924 DEBUG Processing 40/757 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,036 DEBUG Processing 141/866 atomic regions from SNP 42116 to 42716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,147 DEBUG Processing 41/757 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,184 DEBUG Processing 984/1143 atomic regions from SNP 295179 to 295779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,260 DEBUG Processing 142/866 atomic regions from SNP 42416 to 43016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,384 DEBUG Processing 42/757 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,469 DEBUG Processing 985/1143 atomic regions from SNP 295479 to 296079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,489 DEBUG Processing 143/866 atomic regions from SNP 42716 to 43316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,597 DEBUG Processing 43/757 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,721 DEBUG Processing 144/866 atomic regions from SNP 43016 to 43616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,748 DEBUG Processing 986/1143 atomic regions from SNP 295779 to 296379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,809 DEBUG Processing 44/757 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,949 DEBUG Processing 145/866 atomic regions from SNP 43316 to 43916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,027 DEBUG Processing 45/757 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,032 DEBUG Processing 987/1143 atomic regions from SNP 296079 to 296679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,177 DEBUG Processing 146/866 atomic regions from SNP 43616 to 44216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,245 DEBUG Processing 46/757 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,308 DEBUG Processing 988/1143 atomic regions from SNP 296379 to 296979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,416 DEBUG Processing 147/866 atomic regions from SNP 43916 to 44516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,467 DEBUG Processing 47/757 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,586 DEBUG Processing 989/1143 atomic regions from SNP 296679 to 297279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,654 DEBUG Processing 148/866 atomic regions from SNP 44216 to 44816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,686 DEBUG Processing 48/757 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,862 DEBUG Processing 990/1143 atomic regions from SNP 296979 to 297579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,904 DEBUG Processing 149/866 atomic regions from SNP 44516 to 45116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,908 DEBUG Processing 49/757 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,136 DEBUG Processing 50/757 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,147 DEBUG Processing 991/1143 atomic regions from SNP 297279 to 297879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,157 DEBUG Processing 150/866 atomic regions from SNP 44816 to 45416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,363 DEBUG Processing 51/757 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,409 DEBUG Processing 151/866 atomic regions from SNP 45116 to 45716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,437 DEBUG Processing 992/1143 atomic regions from SNP 297579 to 298179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,583 DEBUG Processing 52/757 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,663 DEBUG Processing 152/866 atomic regions from SNP 45416 to 46016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,726 DEBUG Processing 993/1143 atomic regions from SNP 297879 to 298479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,798 DEBUG Processing 53/757 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,917 DEBUG Processing 153/866 atomic regions from SNP 45716 to 46316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,014 DEBUG Processing 994/1143 atomic regions from SNP 298179 to 298779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,015 DEBUG Processing 54/757 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,167 DEBUG Processing 154/866 atomic regions from SNP 46016 to 46616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,236 DEBUG Processing 55/757 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,310 DEBUG Processing 995/1143 atomic regions from SNP 298479 to 299079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,418 DEBUG Processing 155/866 atomic regions from SNP 46316 to 46916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,453 DEBUG Processing 56/757 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,613 DEBUG Processing 996/1143 atomic regions from SNP 298779 to 299379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,667 DEBUG Processing 156/866 atomic regions from SNP 46616 to 47216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,676 DEBUG Processing 57/757 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,917 DEBUG Processing 58/757 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,919 DEBUG Processing 157/866 atomic regions from SNP 46916 to 47516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,932 DEBUG Processing 997/1143 atomic regions from SNP 299079 to 299679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,155 DEBUG Processing 59/757 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,178 DEBUG Processing 158/866 atomic regions from SNP 47216 to 47816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,247 DEBUG Processing 998/1143 atomic regions from SNP 299379 to 299979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,379 DEBUG Processing 60/757 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,434 DEBUG Processing 159/866 atomic regions from SNP 47516 to 48116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,554 DEBUG Processing 999/1143 atomic regions from SNP 299679 to 300279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,614 DEBUG Processing 61/757 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,711 DEBUG Processing 160/866 atomic regions from SNP 47816 to 48416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,841 DEBUG Processing 62/757 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,847 DEBUG Processing 1000/1143 atomic regions from SNP 299979 to 300579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,956 DEBUG Processing 161/866 atomic regions from SNP 48116 to 48716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,061 DEBUG Processing 63/757 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,123 DEBUG Processing 1001/1143 atomic regions from SNP 300279 to 300879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,187 DEBUG Processing 162/866 atomic regions from SNP 48416 to 49016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,284 DEBUG Processing 64/757 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,423 DEBUG Processing 1002/1143 atomic regions from SNP 300579 to 301179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,430 DEBUG Processing 163/866 atomic regions from SNP 48716 to 49316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,516 DEBUG Processing 65/757 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,680 DEBUG Processing 164/866 atomic regions from SNP 49016 to 49616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,728 DEBUG Processing 1003/1143 atomic regions from SNP 300879 to 301479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,737 DEBUG Processing 66/757 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,920 DEBUG Processing 165/866 atomic regions from SNP 49316 to 49916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,970 DEBUG Processing 67/757 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,037 DEBUG Processing 1004/1143 atomic regions from SNP 301179 to 301779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,165 DEBUG Processing 166/866 atomic regions from SNP 49616 to 50216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,193 DEBUG Processing 68/757 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,332 DEBUG Processing 1005/1143 atomic regions from SNP 301479 to 302079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,419 DEBUG Processing 69/757 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,422 DEBUG Processing 167/866 atomic regions from SNP 49916 to 50516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,619 DEBUG Processing 1006/1143 atomic regions from SNP 301779 to 302379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,644 DEBUG Processing 70/757 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,666 DEBUG Processing 168/866 atomic regions from SNP 50216 to 50816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,875 DEBUG Processing 71/757 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,907 DEBUG Processing 1007/1143 atomic regions from SNP 302079 to 302679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,924 DEBUG Processing 169/866 atomic regions from SNP 50516 to 51116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,099 DEBUG Processing 72/757 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,191 DEBUG Processing 170/866 atomic regions from SNP 50816 to 51416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,204 DEBUG Processing 1008/1143 atomic regions from SNP 302379 to 302979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,317 DEBUG Processing 73/757 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,447 DEBUG Processing 171/866 atomic regions from SNP 51116 to 51716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,491 DEBUG Processing 1009/1143 atomic regions from SNP 302679 to 303279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,529 DEBUG Processing 74/757 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,704 DEBUG Processing 172/866 atomic regions from SNP 51416 to 52016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,750 DEBUG Processing 75/757 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,771 DEBUG Processing 1010/1143 atomic regions from SNP 302979 to 303579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,957 DEBUG Processing 173/866 atomic regions from SNP 51716 to 52316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,970 DEBUG Processing 76/757 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,047 DEBUG Processing 1011/1143 atomic regions from SNP 303279 to 303879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,192 DEBUG Processing 77/757 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,200 DEBUG Processing 174/866 atomic regions from SNP 52016 to 52616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,329 DEBUG Processing 1012/1143 atomic regions from SNP 303579 to 304179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,407 DEBUG Processing 78/757 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,446 DEBUG Processing 175/866 atomic regions from SNP 52316 to 52916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,615 DEBUG Processing 1013/1143 atomic regions from SNP 303879 to 304479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,627 DEBUG Processing 79/757 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,677 DEBUG Processing 176/866 atomic regions from SNP 52616 to 53216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,866 DEBUG Processing 80/757 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,903 DEBUG Processing 1014/1143 atomic regions from SNP 304179 to 304779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,913 DEBUG Processing 177/866 atomic regions from SNP 52916 to 53516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,084 DEBUG Processing 81/757 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,149 DEBUG Processing 178/866 atomic regions from SNP 53216 to 53816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,185 DEBUG Processing 1015/1143 atomic regions from SNP 304479 to 305079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,305 DEBUG Processing 82/757 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,382 DEBUG Processing 179/866 atomic regions from SNP 53516 to 54116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,467 DEBUG Processing 1016/1143 atomic regions from SNP 304779 to 305379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,525 DEBUG Processing 83/757 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,612 DEBUG Processing 180/866 atomic regions from SNP 53816 to 54416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,745 DEBUG Processing 84/757 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,749 DEBUG Processing 1017/1143 atomic regions from SNP 305079 to 305679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,863 DEBUG Processing 181/866 atomic regions from SNP 54116 to 54716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,967 DEBUG Processing 85/757 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,029 DEBUG Processing 1018/1143 atomic regions from SNP 305379 to 305979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,117 DEBUG Processing 182/866 atomic regions from SNP 54416 to 55016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,189 DEBUG Processing 86/757 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,309 DEBUG Processing 1019/1143 atomic regions from SNP 305679 to 306279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,372 DEBUG Processing 183/866 atomic regions from SNP 54716 to 55316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,408 DEBUG Processing 87/757 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,584 DEBUG Segmenting atomic regions: 2025-01-31 09:49:51,595 DEBUG Processing 1020/1143 atomic regions from SNP 305979 to 306579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,626 DEBUG Processing 184/866 atomic regions from SNP 55016 to 55616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,629 DEBUG Processing 88/757 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,695 DEBUG Processing 1/714 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,857 DEBUG Processing 89/757 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,878 DEBUG Processing 185/866 atomic regions from SNP 55316 to 55916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,883 DEBUG Processing 1021/1143 atomic regions from SNP 306279 to 306879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,920 DEBUG Processing 2/714 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,089 DEBUG Processing 90/757 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,122 DEBUG Processing 186/866 atomic regions from SNP 55616 to 56216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,151 DEBUG Processing 3/714 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,168 DEBUG Processing 1022/1143 atomic regions from SNP 306579 to 307179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,322 DEBUG Processing 91/757 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,375 DEBUG Processing 187/866 atomic regions from SNP 55916 to 56516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,381 DEBUG Processing 4/714 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,462 DEBUG Processing 1023/1143 atomic regions from SNP 306879 to 307479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,539 DEBUG Processing 92/757 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,590 DEBUG Subchromosome time: 350.2957233720226, subchromosome SNPs: 310836 2025-01-31 09:49:52,592 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:52,607 DEBUG Processing 5/714 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,623 DEBUG Processing 188/866 atomic regions from SNP 56216 to 56816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,747 DEBUG Processing 1024/1143 atomic regions from SNP 307179 to 307779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,755 DEBUG Processing 93/757 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,832 DEBUG Processing 6/714 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,866 DEBUG Processing 189/866 atomic regions from SNP 56516 to 57116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,975 DEBUG Processing 94/757 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,026 DEBUG Processing 1025/1143 atomic regions from SNP 307479 to 308079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,082 DEBUG Processing 7/714 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,128 DEBUG Processing 190/866 atomic regions from SNP 56816 to 57416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,202 DEBUG Processing 95/757 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,312 DEBUG Processing 1026/1143 atomic regions from SNP 307779 to 308379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,337 DEBUG Processing 8/714 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,371 DEBUG Processing 191/866 atomic regions from SNP 57116 to 57716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,423 DEBUG Processing 96/757 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,573 DEBUG Segmenting atomic regions: 2025-01-31 09:49:53,587 DEBUG Processing 9/714 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,617 DEBUG Processing 1027/1143 atomic regions from SNP 308079 to 308679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,618 DEBUG Processing 192/866 atomic regions from SNP 57416 to 58016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,652 DEBUG Processing 97/757 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,717 DEBUG Processing 1/25 atomic regions from SNP 0 to 606 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:53,847 DEBUG Processing 10/714 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,862 DEBUG Processing 193/866 atomic regions from SNP 57716 to 58316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,879 DEBUG Processing 98/757 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,905 DEBUG Processing 1028/1143 atomic regions from SNP 308379 to 308979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,978 DEBUG Processing 2/25 atomic regions from SNP 306 to 912 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:54,094 DEBUG Processing 11/714 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,099 DEBUG Processing 194/866 atomic regions from SNP 58016 to 58616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,110 DEBUG Processing 99/757 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,189 DEBUG Processing 1029/1143 atomic regions from SNP 308679 to 309279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,246 DEBUG Processing 3/25 atomic regions from SNP 612 to 1218 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:54,331 DEBUG Processing 195/866 atomic regions from SNP 58316 to 58916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,338 DEBUG Processing 100/757 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,346 DEBUG Processing 12/714 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,470 DEBUG Processing 1030/1143 atomic regions from SNP 308979 to 309579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,526 DEBUG Processing 4/25 atomic regions from SNP 918 to 1523 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:54,573 DEBUG Processing 196/866 atomic regions from SNP 58616 to 59216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,577 DEBUG Processing 101/757 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,603 DEBUG Processing 13/714 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,763 DEBUG Processing 1031/1143 atomic regions from SNP 309279 to 309879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,806 DEBUG Processing 5/25 atomic regions from SNP 1223 to 1828 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:54,812 DEBUG Processing 197/866 atomic regions from SNP 58916 to 59516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,821 DEBUG Processing 102/757 atomic regions from SNP 30401 to 31002 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,845 DEBUG Processing 14/714 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,049 DEBUG Processing 1032/1143 atomic regions from SNP 309579 to 310179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,059 DEBUG Processing 198/866 atomic regions from SNP 59216 to 59816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,063 DEBUG Processing 103/757 atomic regions from SNP 30702 to 31303 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,090 DEBUG Processing 6/25 atomic regions from SNP 1528 to 2133 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:55,104 DEBUG Processing 15/714 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,304 DEBUG Processing 104/757 atomic regions from SNP 31003 to 31604 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,307 DEBUG Processing 199/866 atomic regions from SNP 59516 to 60116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,342 DEBUG Processing 1033/1143 atomic regions from SNP 309879 to 310479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,346 DEBUG Processing 16/714 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,373 DEBUG Processing 7/25 atomic regions from SNP 1833 to 2438 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:55,538 DEBUG Processing 105/757 atomic regions from SNP 31304 to 31905 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,553 DEBUG Processing 200/866 atomic regions from SNP 59816 to 60416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,583 DEBUG Processing 17/714 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,640 DEBUG Processing 1034/1143 atomic regions from SNP 310179 to 310779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,651 DEBUG Processing 8/25 atomic regions from SNP 2138 to 2743 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:55,769 DEBUG Processing 106/757 atomic regions from SNP 31605 to 32206 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,802 DEBUG Processing 201/866 atomic regions from SNP 60116 to 60716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,819 DEBUG Processing 18/714 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,922 DEBUG Processing 9/25 atomic regions from SNP 2443 to 3048 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:55,932 DEBUG Processing 1035/1143 atomic regions from SNP 310479 to 311079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,006 DEBUG Processing 107/757 atomic regions from SNP 31906 to 32507 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,046 DEBUG Processing 202/866 atomic regions from SNP 60416 to 61016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,048 DEBUG Processing 19/714 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,185 DEBUG Processing 10/25 atomic regions from SNP 2748 to 3353 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:56,215 DEBUG Processing 1036/1143 atomic regions from SNP 310779 to 311379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,252 DEBUG Processing 108/757 atomic regions from SNP 32207 to 32808 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,280 DEBUG Processing 20/714 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,290 DEBUG Processing 203/866 atomic regions from SNP 60716 to 61316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,458 DEBUG Processing 11/25 atomic regions from SNP 3053 to 3658 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:56,501 DEBUG Processing 109/757 atomic regions from SNP 32508 to 33109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,513 DEBUG Processing 1037/1143 atomic regions from SNP 311079 to 311679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,533 DEBUG Processing 21/714 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,549 DEBUG Processing 204/866 atomic regions from SNP 61016 to 61616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,735 DEBUG Processing 110/757 atomic regions from SNP 32809 to 33410 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,740 DEBUG Processing 12/25 atomic regions from SNP 3358 to 3963 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:56,776 DEBUG Processing 22/714 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,794 DEBUG Processing 205/866 atomic regions from SNP 61316 to 61916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,812 DEBUG Processing 1038/1143 atomic regions from SNP 311379 to 311979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,958 DEBUG Processing 111/757 atomic regions from SNP 33110 to 33711 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,032 DEBUG Processing 13/25 atomic regions from SNP 3663 to 4268 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:57,036 DEBUG Processing 23/714 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,039 DEBUG Processing 206/866 atomic regions from SNP 61616 to 62216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,125 DEBUG Processing 1039/1143 atomic regions from SNP 311679 to 312279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,180 DEBUG Processing 112/757 atomic regions from SNP 33411 to 34012 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,299 DEBUG Processing 24/714 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,305 DEBUG Processing 207/866 atomic regions from SNP 61916 to 62516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,364 DEBUG Processing 14/25 atomic regions from SNP 3968 to 4573 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:57,402 DEBUG Processing 113/757 atomic regions from SNP 33712 to 34313 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,433 DEBUG Processing 1040/1143 atomic regions from SNP 311979 to 312579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,562 DEBUG Processing 208/866 atomic regions from SNP 62216 to 62816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,564 DEBUG Processing 25/714 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,630 DEBUG Processing 114/757 atomic regions from SNP 34013 to 34614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,674 DEBUG Processing 15/25 atomic regions from SNP 4273 to 4878 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:57,734 DEBUG Processing 1041/1143 atomic regions from SNP 312279 to 312879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,814 DEBUG Processing 26/714 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,819 DEBUG Processing 209/866 atomic regions from SNP 62516 to 63116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,865 DEBUG Processing 115/757 atomic regions from SNP 34314 to 34915 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,989 DEBUG Processing 16/25 atomic regions from SNP 4578 to 5183 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:58,048 DEBUG Processing 1042/1143 atomic regions from SNP 312579 to 313179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,051 DEBUG Processing 27/714 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,084 DEBUG Processing 210/866 atomic regions from SNP 62816 to 63416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,093 DEBUG Processing 116/757 atomic regions from SNP 34615 to 35216 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,288 DEBUG Segmenting atomic regions: 2025-01-31 09:49:58,302 DEBUG Processing 17/25 atomic regions from SNP 4883 to 5488 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:58,306 DEBUG Processing 28/714 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,325 DEBUG Processing 117/757 atomic regions from SNP 34916 to 35517 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,351 DEBUG Processing 211/866 atomic regions from SNP 63116 to 63716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,356 DEBUG Processing 1043/1143 atomic regions from SNP 312879 to 313479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,389 DEBUG Processing 1/743 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,565 DEBUG Processing 118/757 atomic regions from SNP 35217 to 35818 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,568 DEBUG Processing 29/714 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,621 DEBUG Processing 18/25 atomic regions from SNP 5188 to 5793 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:58,624 DEBUG Processing 2/743 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,636 DEBUG Processing 212/866 atomic regions from SNP 63416 to 64016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,670 DEBUG Processing 1044/1143 atomic regions from SNP 313179 to 313779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,798 DEBUG Processing 119/757 atomic regions from SNP 35518 to 36119 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,829 DEBUG Processing 30/714 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,877 DEBUG Processing 3/743 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,908 DEBUG Processing 213/866 atomic regions from SNP 63716 to 64316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,938 DEBUG Processing 19/25 atomic regions from SNP 5493 to 6098 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:58,978 DEBUG Processing 1045/1143 atomic regions from SNP 313479 to 314079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,024 DEBUG Processing 120/757 atomic regions from SNP 35819 to 36420 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,086 DEBUG Processing 31/714 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,125 DEBUG Processing 4/743 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,200 DEBUG Processing 214/866 atomic regions from SNP 64016 to 64616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,267 DEBUG Processing 20/25 atomic regions from SNP 5798 to 6403 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:59,272 DEBUG Processing 121/757 atomic regions from SNP 36120 to 36721 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,291 DEBUG Processing 1046/1143 atomic regions from SNP 313779 to 314379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,346 DEBUG Processing 32/714 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,358 DEBUG Processing 5/743 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,476 DEBUG Processing 215/866 atomic regions from SNP 64316 to 64916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,514 DEBUG Processing 122/757 atomic regions from SNP 36421 to 37022 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,596 DEBUG Processing 6/743 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,603 DEBUG Processing 21/25 atomic regions from SNP 6103 to 6708 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:59,617 DEBUG Processing 33/714 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,619 DEBUG Processing 1047/1143 atomic regions from SNP 314079 to 314679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,736 DEBUG Processing 216/866 atomic regions from SNP 64616 to 65216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,745 DEBUG Processing 123/757 atomic regions from SNP 36722 to 37323 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,851 DEBUG Processing 7/743 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,880 DEBUG Processing 34/714 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,927 DEBUG Processing 22/25 atomic regions from SNP 6408 to 7013 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:59,957 DEBUG Processing 1048/1143 atomic regions from SNP 314379 to 314979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,986 DEBUG Processing 124/757 atomic regions from SNP 37023 to 37624 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,987 DEBUG Processing 217/866 atomic regions from SNP 64916 to 65516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,105 DEBUG Processing 8/743 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,147 DEBUG Processing 35/714 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,232 DEBUG Processing 125/757 atomic regions from SNP 37324 to 37925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,251 DEBUG Processing 23/25 atomic regions from SNP 6713 to 7318 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:00,256 DEBUG Processing 218/866 atomic regions from SNP 65216 to 65816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,292 DEBUG Processing 1049/1143 atomic regions from SNP 314679 to 315279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,348 DEBUG Processing 9/743 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,410 DEBUG Processing 36/714 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,484 DEBUG Processing 126/757 atomic regions from SNP 37625 to 38226 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,512 DEBUG Processing 219/866 atomic regions from SNP 65516 to 66116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,575 DEBUG Processing 24/25 atomic regions from SNP 7018 to 7623 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:00,592 DEBUG Processing 10/743 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,613 DEBUG Processing 1050/1143 atomic regions from SNP 314979 to 315579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,668 DEBUG Processing 37/714 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,730 DEBUG Processing 127/757 atomic regions from SNP 37926 to 38527 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,779 DEBUG Processing 220/866 atomic regions from SNP 65816 to 66416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,862 DEBUG Processing 11/743 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,914 DEBUG Processing 25/25 atomic regions from SNP 7323 to 7928 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:00,922 DEBUG Processing 38/714 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,962 DEBUG Processing 1051/1143 atomic regions from SNP 315279 to 315879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,982 DEBUG Processing 128/757 atomic regions from SNP 38227 to 38828 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,029 DEBUG Processing 221/866 atomic regions from SNP 66116 to 66716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,091 DEBUG Unique SNPs positions in subchromosome 2: 7929 2025-01-31 09:50:01,101 DEBUG Subchromosome time: 8.508656637044623, subchromosome SNPs: 7929 2025-01-31 09:50:01,101 DEBUG Estimated BADs: [2.13, 4.25, 2.13, 0.53, 1.06, 2.13, 0.53, 2.13, 0.53, 2.13, 0.53, 2.13, 1.06, 2.13, 0.53, 2.13, 0.71, 2.13, 4.25, 2.13, 4.25, 2.13, 2.13, 6.38] SNP counts: [38839, 20095, 7797, 5701, 43796, 24896, 3309, 4513, 6873, 9301, 9912, 12889, 12311, 14685, 1511, 25555, 2345, 23626, 10885, 16820, 1779, 13398, 3489, 4440] SNP IDs counts: [38839, 20095, 7797, 5701, 43796, 24896, 3309, 4513, 6873, 9301, 9912, 12889, 12311, 14685, 1511, 25555, 2345, 23626, 10885, 16820, 1779, 13398, 3489, 4440] Critical gap: 722186bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 24.96Mbp, 35.51Mbp, 39.87Mbp, 43.12Mbp, 67.59Mbp, 80.91Mbp, 82.87Mbp, 85.57Mbp, 89.71Mbp, 94.88Mbp, 101.12Mbp, 108.09Mbp, 115.13Mbp, 123.02Mbp, 123.88Mbp, 137.69Mbp, 139.02Mbp, 152.31Mbp, 158.08Mbp, 167.03Mbp, 167.97Mbp, 175.18Mbp[1.52Mbp], 179.67Mbp, 182.11Mbp] 2025-01-31 09:50:01,102 DEBUG chr2 time: 8.509195034042932 s 2025-01-31 09:50:01,107 DEBUG Processing 12/743 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,177 DEBUG Processing 39/714 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,236 DEBUG Processing 129/757 atomic regions from SNP 38528 to 39129 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,291 DEBUG Processing 222/866 atomic regions from SNP 66416 to 67016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,304 DEBUG chr2: Fitting background model for 24 segments 2025-01-31 09:50:01,314 DEBUG Processing 1052/1143 atomic regions from SNP 315579 to 316179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:01,351 DEBUG Processing 13/743 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,430 DEBUG Processing 40/714 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,490 DEBUG Processing 130/757 atomic regions from SNP 38829 to 39430 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,565 DEBUG Processing 223/866 atomic regions from SNP 66716 to 67316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,607 DEBUG Processing 14/743 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,680 DEBUG Processing 1053/1143 atomic regions from SNP 315879 to 316479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:01,709 DEBUG Processing 41/714 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,743 DEBUG Processing 131/757 atomic regions from SNP 39130 to 39731 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,826 DEBUG Processing 224/866 atomic regions from SNP 67016 to 67616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,852 DEBUG Processing 15/743 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,982 DEBUG Processing 42/714 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,998 DEBUG Processing 132/757 atomic regions from SNP 39431 to 40032 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,025 DEBUG Processing 1054/1143 atomic regions from SNP 316179 to 316779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:02,089 DEBUG Processing 225/866 atomic regions from SNP 67316 to 67916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,099 DEBUG Processing 16/743 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,264 DEBUG Processing 133/757 atomic regions from SNP 39732 to 40333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,267 DEBUG Processing 43/714 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,351 DEBUG Processing 17/743 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,359 DEBUG Processing 226/866 atomic regions from SNP 67616 to 68216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,379 DEBUG Processing 1055/1143 atomic regions from SNP 316479 to 317079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:02,515 DEBUG Processing 134/757 atomic regions from SNP 40033 to 40634 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,543 DEBUG Processing 44/714 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,608 DEBUG Processing 18/743 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,634 DEBUG Processing 227/866 atomic regions from SNP 67916 to 68516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,736 DEBUG Processing 1056/1143 atomic regions from SNP 316779 to 317379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:02,764 DEBUG Processing 135/757 atomic regions from SNP 40334 to 40935 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,810 DEBUG Processing 45/714 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,860 DEBUG Processing 19/743 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,907 DEBUG Processing 228/866 atomic regions from SNP 68216 to 68816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,016 DEBUG Processing 136/757 atomic regions from SNP 40635 to 41236 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,069 DEBUG Processing 46/714 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,081 DEBUG Processing 1057/1143 atomic regions from SNP 317079 to 317679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,112 DEBUG Processing 20/743 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,175 DEBUG Processing 229/866 atomic regions from SNP 68516 to 69116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,267 DEBUG Processing 137/757 atomic regions from SNP 40936 to 41537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,322 DEBUG Processing 47/714 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,362 DEBUG Processing 21/743 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,431 DEBUG Processing 1058/1143 atomic regions from SNP 317379 to 317979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,442 DEBUG Processing 230/866 atomic regions from SNP 68816 to 69416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,517 DEBUG Processing 138/757 atomic regions from SNP 41237 to 41838 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,577 DEBUG Processing 48/714 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,612 DEBUG Processing 22/743 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,707 DEBUG Processing 231/866 atomic regions from SNP 69116 to 69716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,770 DEBUG Processing 139/757 atomic regions from SNP 41538 to 42139 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,772 DEBUG Processing 1059/1143 atomic regions from SNP 317679 to 318279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,827 DEBUG Processing 49/714 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,864 DEBUG Processing 23/743 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,981 DEBUG Processing 232/866 atomic regions from SNP 69416 to 70016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,025 DEBUG Processing 140/757 atomic regions from SNP 41839 to 42440 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,085 DEBUG Processing 50/714 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,100 DEBUG Processing 1060/1143 atomic regions from SNP 317979 to 318579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:04,115 DEBUG Processing 24/743 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,242 DEBUG Processing 233/866 atomic regions from SNP 69716 to 70316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,279 DEBUG Processing 141/757 atomic regions from SNP 42140 to 42741 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,344 DEBUG Processing 51/714 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,366 DEBUG Processing 25/743 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,434 DEBUG Processing 1061/1143 atomic regions from SNP 318279 to 318879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:04,505 DEBUG Processing 234/866 atomic regions from SNP 70016 to 70616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,527 DEBUG Processing 142/757 atomic regions from SNP 42441 to 43042 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,599 DEBUG Processing 52/714 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,624 DEBUG Processing 26/743 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,762 DEBUG Processing 1062/1143 atomic regions from SNP 318579 to 319179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:04,770 DEBUG Processing 235/866 atomic regions from SNP 70316 to 70916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,776 DEBUG Processing 143/757 atomic regions from SNP 42742 to 43343 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,844 DEBUG Processing 53/714 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,866 DEBUG Processing 27/743 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,029 DEBUG Processing 144/757 atomic regions from SNP 43043 to 43644 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,034 DEBUG Processing 236/866 atomic regions from SNP 70616 to 71216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,095 DEBUG Processing 1063/1143 atomic regions from SNP 318879 to 319479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:05,096 DEBUG Processing 54/714 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,108 DEBUG Processing 28/743 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,284 DEBUG Processing 145/757 atomic regions from SNP 43344 to 43945 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,301 DEBUG Processing 237/866 atomic regions from SNP 70916 to 71516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,350 DEBUG Processing 55/714 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,358 DEBUG Processing 29/743 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,431 DEBUG Processing 1064/1143 atomic regions from SNP 319179 to 319779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:05,537 DEBUG Processing 146/757 atomic regions from SNP 43645 to 44246 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,568 DEBUG Processing 238/866 atomic regions from SNP 71216 to 71816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,608 DEBUG Processing 30/743 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,610 DEBUG Processing 56/714 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,771 DEBUG Processing 1065/1143 atomic regions from SNP 319479 to 320079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:05,802 DEBUG Processing 147/757 atomic regions from SNP 43946 to 44547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,848 DEBUG Processing 239/866 atomic regions from SNP 71516 to 72116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,865 DEBUG Processing 31/743 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,876 DEBUG Processing 57/714 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,054 DEBUG Processing 148/757 atomic regions from SNP 44247 to 44848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,091 DEBUG Processing 1066/1143 atomic regions from SNP 319779 to 320379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,111 DEBUG Processing 32/743 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,114 DEBUG Processing 240/866 atomic regions from SNP 71816 to 72416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,125 DEBUG Processing 58/714 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,305 DEBUG Processing 149/757 atomic regions from SNP 44548 to 45149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,365 DEBUG Processing 33/743 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,385 DEBUG Processing 241/866 atomic regions from SNP 72116 to 72716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,388 DEBUG Processing 59/714 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,415 DEBUG Processing 1067/1143 atomic regions from SNP 320079 to 320679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,562 DEBUG Processing 150/757 atomic regions from SNP 44849 to 45450 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,617 DEBUG Processing 34/743 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,643 DEBUG Processing 60/714 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,655 DEBUG Processing 242/866 atomic regions from SNP 72416 to 73016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,741 DEBUG Processing 1068/1143 atomic regions from SNP 320379 to 320979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,807 DEBUG Processing 151/757 atomic regions from SNP 45150 to 45751 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,859 DEBUG Processing 35/743 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,893 DEBUG Processing 61/714 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,913 DEBUG Processing 243/866 atomic regions from SNP 72716 to 73316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,048 DEBUG Processing 152/757 atomic regions from SNP 45451 to 46052 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,053 DEBUG Processing 1069/1143 atomic regions from SNP 320679 to 321279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:07,109 DEBUG Processing 36/743 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,145 DEBUG Processing 62/714 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,186 DEBUG Processing 244/866 atomic regions from SNP 73016 to 73616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,298 DEBUG Processing 153/757 atomic regions from SNP 45752 to 46353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,360 DEBUG Processing 37/743 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,388 DEBUG Processing 1070/1143 atomic regions from SNP 320979 to 321579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:07,412 DEBUG Processing 63/714 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,448 DEBUG Processing 245/866 atomic regions from SNP 73316 to 73916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,546 DEBUG Processing 154/757 atomic regions from SNP 46053 to 46654 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,604 DEBUG Processing 38/743 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,675 DEBUG Processing 64/714 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,710 DEBUG Processing 246/866 atomic regions from SNP 73616 to 74216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,726 DEBUG Processing 1071/1143 atomic regions from SNP 321279 to 321879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:07,792 DEBUG Processing 155/757 atomic regions from SNP 46354 to 46955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,844 DEBUG Processing 39/743 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,945 DEBUG Processing 65/714 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,977 DEBUG Processing 247/866 atomic regions from SNP 73916 to 74516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,042 DEBUG Processing 1072/1143 atomic regions from SNP 321579 to 322179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:08,043 DEBUG Processing 156/757 atomic regions from SNP 46655 to 47256 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,098 DEBUG Processing 40/743 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,196 DEBUG Processing 66/714 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,241 DEBUG Processing 248/866 atomic regions from SNP 74216 to 74816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,293 DEBUG Processing 157/757 atomic regions from SNP 46956 to 47557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,341 DEBUG Processing 41/743 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,351 DEBUG Processing 1073/1143 atomic regions from SNP 321879 to 322479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:08,445 DEBUG Processing 67/714 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,502 DEBUG Processing 249/866 atomic regions from SNP 74516 to 75116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,542 DEBUG Processing 158/757 atomic regions from SNP 47257 to 47858 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,583 DEBUG Processing 42/743 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,662 DEBUG Processing 1074/1143 atomic regions from SNP 322179 to 322779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:08,702 DEBUG Processing 68/714 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,774 DEBUG Processing 250/866 atomic regions from SNP 74816 to 75416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,799 DEBUG Processing 159/757 atomic regions from SNP 47558 to 48159 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,831 DEBUG Processing 43/743 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,955 DEBUG Processing 69/714 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,984 DEBUG Processing 1075/1143 atomic regions from SNP 322479 to 323079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:09,053 DEBUG Processing 251/866 atomic regions from SNP 75116 to 75716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,060 DEBUG Processing 160/757 atomic regions from SNP 47859 to 48460 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,077 DEBUG Processing 44/743 atomic regions from SNP 12943 to 13543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,201 DEBUG Processing 70/714 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,298 DEBUG Processing 1076/1143 atomic regions from SNP 322779 to 323379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:09,307 DEBUG Processing 161/757 atomic regions from SNP 48160 to 48761 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,314 DEBUG Processing 252/866 atomic regions from SNP 75416 to 76016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,324 DEBUG Processing 45/743 atomic regions from SNP 13243 to 13843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,442 DEBUG Processing 71/714 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,571 DEBUG Processing 162/757 atomic regions from SNP 48461 to 49062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,580 DEBUG Processing 253/866 atomic regions from SNP 75716 to 76316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,600 DEBUG Processing 46/743 atomic regions from SNP 13543 to 14143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,630 DEBUG Processing 1077/1143 atomic regions from SNP 323079 to 323679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:09,682 DEBUG Processing 72/714 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,816 DEBUG Processing 163/757 atomic regions from SNP 48762 to 49363 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,839 DEBUG Processing 254/866 atomic regions from SNP 76016 to 76616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,861 DEBUG Processing 47/743 atomic regions from SNP 13843 to 14443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,928 DEBUG Processing 73/714 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,953 DEBUG Processing 1078/1143 atomic regions from SNP 323379 to 323979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:10,060 DEBUG Processing 164/757 atomic regions from SNP 49063 to 49664 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,102 DEBUG Processing 255/866 atomic regions from SNP 76316 to 76916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,124 DEBUG Processing 48/743 atomic regions from SNP 14143 to 14743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,180 DEBUG Processing 74/714 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,289 DEBUG Processing 1079/1143 atomic regions from SNP 323679 to 324279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:10,299 DEBUG Processing 165/757 atomic regions from SNP 49364 to 49965 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,358 DEBUG Processing 256/866 atomic regions from SNP 76616 to 77216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,376 DEBUG Processing 49/743 atomic regions from SNP 14443 to 15043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,426 DEBUG Processing 75/714 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,547 DEBUG Processing 166/757 atomic regions from SNP 49665 to 50266 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,629 DEBUG Processing 257/866 atomic regions from SNP 76916 to 77516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,629 DEBUG Processing 1080/1143 atomic regions from SNP 323979 to 324579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:10,652 DEBUG Processing 50/743 atomic regions from SNP 14743 to 15343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,679 DEBUG Processing 76/714 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,789 DEBUG Processing 167/757 atomic regions from SNP 49966 to 50567 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,899 DEBUG Processing 258/866 atomic regions from SNP 77216 to 77816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,930 DEBUG Processing 51/743 atomic regions from SNP 15043 to 15643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,936 DEBUG Processing 77/714 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,962 DEBUG Processing 1081/1143 atomic regions from SNP 324279 to 324879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:11,028 DEBUG Processing 168/757 atomic regions from SNP 50267 to 50868 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,165 DEBUG Processing 259/866 atomic regions from SNP 77516 to 78116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,193 DEBUG Processing 78/714 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,200 DEBUG Processing 52/743 atomic regions from SNP 15343 to 15943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,273 DEBUG Processing 169/757 atomic regions from SNP 50568 to 51169 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,303 DEBUG Processing 1082/1143 atomic regions from SNP 324579 to 325179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:11,438 DEBUG Processing 260/866 atomic regions from SNP 77816 to 78416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,456 DEBUG Processing 79/714 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,466 DEBUG Processing 53/743 atomic regions from SNP 15643 to 16243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,532 DEBUG Processing 170/757 atomic regions from SNP 50869 to 51470 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,646 DEBUG Processing 1083/1143 atomic regions from SNP 324879 to 325479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:11,722 DEBUG Processing 54/743 atomic regions from SNP 15943 to 16543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,723 DEBUG Processing 261/866 atomic regions from SNP 78116 to 78716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,727 DEBUG Processing 80/714 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,781 DEBUG Processing 171/757 atomic regions from SNP 51170 to 51771 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,971 DEBUG Processing 55/743 atomic regions from SNP 16243 to 16843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,978 DEBUG Processing 1084/1143 atomic regions from SNP 325179 to 325779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:11,992 DEBUG Processing 262/866 atomic regions from SNP 78416 to 79016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,996 DEBUG Processing 81/714 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,029 DEBUG Processing 172/757 atomic regions from SNP 51471 to 52072 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,223 DEBUG Processing 56/743 atomic regions from SNP 16543 to 17143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,253 DEBUG Processing 82/714 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,280 DEBUG Processing 263/866 atomic regions from SNP 78716 to 79316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,285 DEBUG Processing 173/757 atomic regions from SNP 51772 to 52373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,317 DEBUG Processing 1085/1143 atomic regions from SNP 325479 to 326079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:12,480 DEBUG Processing 57/743 atomic regions from SNP 16843 to 17443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,515 DEBUG Processing 83/714 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,547 DEBUG Processing 174/757 atomic regions from SNP 52073 to 52674 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,577 DEBUG Processing 264/866 atomic regions from SNP 79016 to 79616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,641 DEBUG Processing 1086/1143 atomic regions from SNP 325779 to 326379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:12,747 DEBUG Processing 58/743 atomic regions from SNP 17143 to 17743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,776 DEBUG Processing 84/714 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,808 DEBUG Processing 175/757 atomic regions from SNP 52374 to 52975 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,857 DEBUG Processing 265/866 atomic regions from SNP 79316 to 79916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,960 DEBUG Processing 1087/1143 atomic regions from SNP 326079 to 326679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:13,041 DEBUG Processing 85/714 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,045 DEBUG Processing 59/743 atomic regions from SNP 17443 to 18043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,072 DEBUG Processing 176/757 atomic regions from SNP 52675 to 53276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,128 DEBUG Processing 266/866 atomic regions from SNP 79616 to 80216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,299 DEBUG Processing 1088/1143 atomic regions from SNP 326379 to 326979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:13,311 DEBUG Processing 86/714 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,336 DEBUG Processing 177/757 atomic regions from SNP 52976 to 53577 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,339 DEBUG Processing 60/743 atomic regions from SNP 17743 to 18343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,400 DEBUG Processing 267/866 atomic regions from SNP 79916 to 80516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,570 DEBUG Processing 87/714 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,595 DEBUG Processing 178/757 atomic regions from SNP 53277 to 53878 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,616 DEBUG Processing 61/743 atomic regions from SNP 18043 to 18643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,621 DEBUG Processing 1089/1143 atomic regions from SNP 326679 to 327279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:13,664 DEBUG Processing 268/866 atomic regions from SNP 80216 to 80816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,823 DEBUG Processing 88/714 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,847 DEBUG Processing 179/757 atomic regions from SNP 53578 to 54179 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,893 DEBUG Processing 62/743 atomic regions from SNP 18343 to 18943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,927 DEBUG Processing 269/866 atomic regions from SNP 80516 to 81116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,934 DEBUG Processing 1090/1143 atomic regions from SNP 326979 to 327579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,069 DEBUG Processing 89/714 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,097 DEBUG Processing 180/757 atomic regions from SNP 53879 to 54480 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,157 DEBUG Processing 63/743 atomic regions from SNP 18643 to 19243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,205 DEBUG Processing 270/866 atomic regions from SNP 80816 to 81416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,251 DEBUG Processing 1091/1143 atomic regions from SNP 327279 to 327879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,316 DEBUG Processing 90/714 atomic regions from SNP 26789 to 27390 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,347 DEBUG Processing 181/757 atomic regions from SNP 54180 to 54781 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,421 DEBUG Processing 64/743 atomic regions from SNP 18943 to 19543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,491 DEBUG Processing 271/866 atomic regions from SNP 81116 to 81716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,567 DEBUG Processing 1092/1143 atomic regions from SNP 327579 to 328179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,572 DEBUG Processing 91/714 atomic regions from SNP 27090 to 27691 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,604 DEBUG Processing 182/757 atomic regions from SNP 54481 to 55082 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,678 DEBUG Processing 65/743 atomic regions from SNP 19243 to 19843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,770 DEBUG Processing 272/866 atomic regions from SNP 81416 to 82016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,824 DEBUG Processing 92/714 atomic regions from SNP 27391 to 27992 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,858 DEBUG Processing 183/757 atomic regions from SNP 54782 to 55383 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,880 DEBUG Processing 1093/1143 atomic regions from SNP 327879 to 328479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,926 DEBUG Processing 66/743 atomic regions from SNP 19543 to 20143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,027 DEBUG Processing 273/866 atomic regions from SNP 81716 to 82316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,083 DEBUG Processing 93/714 atomic regions from SNP 27692 to 28293 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,117 DEBUG Processing 184/757 atomic regions from SNP 55083 to 55684 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,186 DEBUG Processing 67/743 atomic regions from SNP 19843 to 20443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,207 DEBUG Processing 1094/1143 atomic regions from SNP 328179 to 328779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:15,287 DEBUG Processing 274/866 atomic regions from SNP 82016 to 82616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,326 DEBUG Processing 94/714 atomic regions from SNP 27993 to 28594 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,369 DEBUG Processing 185/757 atomic regions from SNP 55384 to 55985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,440 DEBUG Processing 68/743 atomic regions from SNP 20143 to 20743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,528 DEBUG Processing 1095/1143 atomic regions from SNP 328479 to 329079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:15,554 DEBUG Processing 275/866 atomic regions from SNP 82316 to 82916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,574 DEBUG Processing 95/714 atomic regions from SNP 28294 to 28895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,623 DEBUG Processing 186/757 atomic regions from SNP 55685 to 56286 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,697 DEBUG Processing 69/743 atomic regions from SNP 20443 to 21043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,827 DEBUG Processing 96/714 atomic regions from SNP 28595 to 29196 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,836 DEBUG Processing 276/866 atomic regions from SNP 82616 to 83216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,848 DEBUG Processing 1096/1143 atomic regions from SNP 328779 to 329379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:15,886 DEBUG Processing 187/757 atomic regions from SNP 55986 to 56587 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,951 DEBUG Processing 70/743 atomic regions from SNP 20743 to 21343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,081 DEBUG Processing 97/714 atomic regions from SNP 28896 to 29497 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,105 DEBUG Processing 277/866 atomic regions from SNP 82916 to 83516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,145 DEBUG Processing 188/757 atomic regions from SNP 56287 to 56888 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,164 DEBUG Processing 1097/1143 atomic regions from SNP 329079 to 329679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:16,210 DEBUG Processing 71/743 atomic regions from SNP 21043 to 21643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,329 DEBUG Processing 98/714 atomic regions from SNP 29197 to 29798 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,375 DEBUG Processing 278/866 atomic regions from SNP 83216 to 83816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,399 DEBUG Processing 189/757 atomic regions from SNP 56588 to 57189 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,481 DEBUG Processing 1098/1143 atomic regions from SNP 329379 to 329979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:16,490 DEBUG Processing 72/743 atomic regions from SNP 21343 to 21943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,581 DEBUG Processing 99/714 atomic regions from SNP 29498 to 30099 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,634 DEBUG Processing 279/866 atomic regions from SNP 83516 to 84116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,649 DEBUG Processing 190/757 atomic regions from SNP 56889 to 57490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,754 DEBUG Processing 73/743 atomic regions from SNP 21643 to 22243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,807 DEBUG Processing 1099/1143 atomic regions from SNP 329679 to 330279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:16,838 DEBUG Processing 100/714 atomic regions from SNP 29799 to 30400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,901 DEBUG Processing 280/866 atomic regions from SNP 83816 to 84416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,903 DEBUG Processing 191/757 atomic regions from SNP 57190 to 57791 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,008 DEBUG Processing 74/743 atomic regions from SNP 21943 to 22543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,093 DEBUG Processing 101/714 atomic regions from SNP 30100 to 30701 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,128 DEBUG Processing 1100/1143 atomic regions from SNP 329979 to 330579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:17,147 DEBUG Processing 192/757 atomic regions from SNP 57491 to 58092 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,163 DEBUG Processing 281/866 atomic regions from SNP 84116 to 84716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,255 DEBUG Processing 75/743 atomic regions from SNP 22243 to 22843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,345 DEBUG Processing 102/714 atomic regions from SNP 30401 to 31002 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,396 DEBUG Processing 193/757 atomic regions from SNP 57792 to 58393 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,421 DEBUG Processing 282/866 atomic regions from SNP 84416 to 85016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,437 DEBUG Processing 1101/1143 atomic regions from SNP 330279 to 330879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:17,497 DEBUG Processing 76/743 atomic regions from SNP 22543 to 23143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,606 DEBUG Processing 103/714 atomic regions from SNP 30702 to 31303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,646 DEBUG Processing 194/757 atomic regions from SNP 58093 to 58694 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,685 DEBUG Processing 283/866 atomic regions from SNP 84716 to 85316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,741 DEBUG Processing 77/743 atomic regions from SNP 22843 to 23443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,748 DEBUG Processing 1102/1143 atomic regions from SNP 330579 to 331179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:17,850 DEBUG Processing 104/714 atomic regions from SNP 31003 to 31604 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,892 DEBUG Processing 195/757 atomic regions from SNP 58394 to 58995 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,943 DEBUG Processing 284/866 atomic regions from SNP 85016 to 85616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,985 DEBUG Processing 78/743 atomic regions from SNP 23143 to 23743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,059 DEBUG Processing 1103/1143 atomic regions from SNP 330879 to 331479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:18,100 DEBUG Processing 105/714 atomic regions from SNP 31304 to 31905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,141 DEBUG Processing 196/757 atomic regions from SNP 58695 to 59296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,200 DEBUG Processing 285/866 atomic regions from SNP 85316 to 85916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,234 DEBUG Processing 79/743 atomic regions from SNP 23443 to 24043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,352 DEBUG Processing 106/714 atomic regions from SNP 31605 to 32206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,371 DEBUG Processing 1104/1143 atomic regions from SNP 331179 to 331779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:18,390 DEBUG Processing 197/757 atomic regions from SNP 58996 to 59597 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,458 DEBUG Processing 286/866 atomic regions from SNP 85616 to 86216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,470 DEBUG Processing 80/743 atomic regions from SNP 23743 to 24343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,596 DEBUG Processing 107/714 atomic regions from SNP 31906 to 32507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,641 DEBUG Processing 198/757 atomic regions from SNP 59297 to 59898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,680 DEBUG Processing 1105/1143 atomic regions from SNP 331479 to 332079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:18,709 DEBUG Processing 81/743 atomic regions from SNP 24043 to 24643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,714 DEBUG Processing 287/866 atomic regions from SNP 85916 to 86516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,833 DEBUG Processing 108/714 atomic regions from SNP 32207 to 32808 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,885 DEBUG Processing 199/757 atomic regions from SNP 59598 to 60199 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,953 DEBUG Processing 82/743 atomic regions from SNP 24343 to 24943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,976 DEBUG Processing 288/866 atomic regions from SNP 86216 to 86816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,992 DEBUG Processing 1106/1143 atomic regions from SNP 331779 to 332379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:19,076 DEBUG Processing 109/714 atomic regions from SNP 32508 to 33109 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,130 DEBUG Processing 200/757 atomic regions from SNP 59899 to 60500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,194 DEBUG Processing 83/743 atomic regions from SNP 24643 to 25243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,238 DEBUG Processing 289/866 atomic regions from SNP 86516 to 87116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,302 DEBUG Processing 1107/1143 atomic regions from SNP 332079 to 332679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:19,343 DEBUG Processing 110/714 atomic regions from SNP 32809 to 33410 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,375 DEBUG Processing 201/757 atomic regions from SNP 60200 to 60801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,433 DEBUG Processing 84/743 atomic regions from SNP 24943 to 25543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,497 DEBUG Processing 290/866 atomic regions from SNP 86816 to 87416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,613 DEBUG Processing 1108/1143 atomic regions from SNP 332379 to 332979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:19,630 DEBUG Processing 111/714 atomic regions from SNP 33110 to 33711 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,640 DEBUG Processing 202/757 atomic regions from SNP 60501 to 61102 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,691 DEBUG Processing 85/743 atomic regions from SNP 25243 to 25843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,760 DEBUG Processing 291/866 atomic regions from SNP 87116 to 87716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,890 DEBUG Processing 203/757 atomic regions from SNP 60802 to 61403 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,905 DEBUG Processing 112/714 atomic regions from SNP 33411 to 34012 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,927 DEBUG Processing 1109/1143 atomic regions from SNP 332679 to 333279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:19,941 DEBUG Processing 86/743 atomic regions from SNP 25543 to 26143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,013 DEBUG Processing 292/866 atomic regions from SNP 87416 to 88016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,145 DEBUG Processing 204/757 atomic regions from SNP 61103 to 61704 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,180 DEBUG Processing 113/714 atomic regions from SNP 33712 to 34313 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,192 DEBUG Processing 87/743 atomic regions from SNP 25843 to 26443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,269 DEBUG Processing 1110/1143 atomic regions from SNP 332979 to 333579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:20,282 DEBUG Processing 293/866 atomic regions from SNP 87716 to 88316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,395 DEBUG Processing 205/757 atomic regions from SNP 61404 to 62005 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,440 DEBUG Processing 88/743 atomic regions from SNP 26143 to 26743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,468 DEBUG Processing 114/714 atomic regions from SNP 34013 to 34614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,548 DEBUG Processing 294/866 atomic regions from SNP 88016 to 88616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,600 DEBUG Processing 1111/1143 atomic regions from SNP 333279 to 333879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:20,646 DEBUG Processing 206/757 atomic regions from SNP 61705 to 62306 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,697 DEBUG Processing 89/743 atomic regions from SNP 26443 to 27043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,753 DEBUG Processing 115/714 atomic regions from SNP 34314 to 34915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,812 DEBUG Processing 295/866 atomic regions from SNP 88316 to 88916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,899 DEBUG Processing 207/757 atomic regions from SNP 62006 to 62607 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,919 DEBUG Processing 1112/1143 atomic regions from SNP 333579 to 334179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:20,949 DEBUG Processing 90/743 atomic regions from SNP 26743 to 27343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,036 DEBUG Processing 116/714 atomic regions from SNP 34615 to 35216 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,072 DEBUG Processing 296/866 atomic regions from SNP 88616 to 89216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,156 DEBUG Processing 208/757 atomic regions from SNP 62307 to 62908 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,201 DEBUG Processing 91/743 atomic regions from SNP 27043 to 27643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,237 DEBUG Processing 1113/1143 atomic regions from SNP 333879 to 334479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:21,315 DEBUG Processing 117/714 atomic regions from SNP 34916 to 35517 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,333 DEBUG Processing 297/866 atomic regions from SNP 88916 to 89516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,399 DEBUG Processing 209/757 atomic regions from SNP 62608 to 63209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,458 DEBUG Processing 92/743 atomic regions from SNP 27343 to 27943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,555 DEBUG Processing 1114/1143 atomic regions from SNP 334179 to 334779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:21,593 DEBUG Processing 298/866 atomic regions from SNP 89216 to 89816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,599 DEBUG Processing 118/714 atomic regions from SNP 35217 to 35818 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,645 DEBUG Processing 210/757 atomic regions from SNP 62909 to 63510 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,710 DEBUG Processing 93/743 atomic regions from SNP 27643 to 28243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,855 DEBUG Processing 299/866 atomic regions from SNP 89516 to 90116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,876 DEBUG Processing 1115/1143 atomic regions from SNP 334479 to 335079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:21,882 DEBUG Processing 119/714 atomic regions from SNP 35518 to 36119 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,895 DEBUG Processing 211/757 atomic regions from SNP 63210 to 63811 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,964 DEBUG Processing 94/743 atomic regions from SNP 27943 to 28543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,120 DEBUG Processing 300/866 atomic regions from SNP 89816 to 90416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,149 DEBUG Processing 212/757 atomic regions from SNP 63511 to 64112 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,166 DEBUG Processing 120/714 atomic regions from SNP 35819 to 36420 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,206 DEBUG Processing 1116/1143 atomic regions from SNP 334779 to 335379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:22,225 DEBUG Processing 95/743 atomic regions from SNP 28243 to 28843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,378 DEBUG Processing 301/866 atomic regions from SNP 90116 to 90716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,397 DEBUG Processing 213/757 atomic regions from SNP 63812 to 64413 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,431 DEBUG Processing 121/714 atomic regions from SNP 36120 to 36721 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,471 DEBUG Processing 96/743 atomic regions from SNP 28543 to 29143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,545 DEBUG Processing 1117/1143 atomic regions from SNP 335079 to 335679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:22,636 DEBUG Processing 302/866 atomic regions from SNP 90416 to 91016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,649 DEBUG Processing 214/757 atomic regions from SNP 64113 to 64714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,699 DEBUG Processing 122/714 atomic regions from SNP 36421 to 37022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,720 DEBUG Processing 97/743 atomic regions from SNP 28843 to 29443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,883 DEBUG Processing 1118/1143 atomic regions from SNP 335379 to 335979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:22,894 DEBUG Processing 303/866 atomic regions from SNP 90716 to 91316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,913 DEBUG Processing 215/757 atomic regions from SNP 64414 to 65014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,967 DEBUG Processing 123/714 atomic regions from SNP 36722 to 37323 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,968 DEBUG Processing 98/743 atomic regions from SNP 29143 to 29743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,156 DEBUG Processing 304/866 atomic regions from SNP 91016 to 91616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,177 DEBUG Processing 216/757 atomic regions from SNP 64714 to 65314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,220 DEBUG Processing 1119/1143 atomic regions from SNP 335679 to 336279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:23,220 DEBUG Processing 99/743 atomic regions from SNP 29443 to 30043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,233 DEBUG Processing 124/714 atomic regions from SNP 37023 to 37624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,424 DEBUG Processing 305/866 atomic regions from SNP 91316 to 91916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,434 DEBUG Processing 217/757 atomic regions from SNP 65014 to 65614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,475 DEBUG Processing 100/743 atomic regions from SNP 29743 to 30343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,499 DEBUG Processing 125/714 atomic regions from SNP 37324 to 37925 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,567 DEBUG Processing 1120/1143 atomic regions from SNP 335979 to 336579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:23,698 DEBUG Processing 218/757 atomic regions from SNP 65314 to 65914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,704 DEBUG Processing 306/866 atomic regions from SNP 91616 to 92216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,725 DEBUG Processing 101/743 atomic regions from SNP 30043 to 30643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,770 DEBUG Processing 126/714 atomic regions from SNP 37625 to 38226 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,906 DEBUG Processing 1121/1143 atomic regions from SNP 336279 to 336879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:23,984 DEBUG Processing 219/757 atomic regions from SNP 65614 to 66214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,984 DEBUG Processing 102/743 atomic regions from SNP 30343 to 30943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,991 DEBUG Processing 307/866 atomic regions from SNP 91916 to 92516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,047 DEBUG Processing 127/714 atomic regions from SNP 37926 to 38527 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,231 DEBUG Processing 103/743 atomic regions from SNP 30643 to 31243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,233 DEBUG Processing 1122/1143 atomic regions from SNP 336579 to 337179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:24,259 DEBUG Processing 220/757 atomic regions from SNP 65914 to 66514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,273 DEBUG Processing 308/866 atomic regions from SNP 92216 to 92816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,323 DEBUG Processing 128/714 atomic regions from SNP 38227 to 38828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,486 DEBUG Processing 104/743 atomic regions from SNP 30943 to 31543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,524 DEBUG Processing 221/757 atomic regions from SNP 66214 to 66814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,553 DEBUG Processing 309/866 atomic regions from SNP 92516 to 93116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,573 DEBUG Processing 129/714 atomic regions from SNP 38528 to 39129 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,576 DEBUG Processing 1123/1143 atomic regions from SNP 336879 to 337479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:24,739 DEBUG Processing 105/743 atomic regions from SNP 31243 to 31843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,798 DEBUG Processing 222/757 atomic regions from SNP 66514 to 67114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,834 DEBUG Processing 310/866 atomic regions from SNP 92816 to 93416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,836 DEBUG Processing 130/714 atomic regions from SNP 38829 to 39430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,933 DEBUG Processing 1124/1143 atomic regions from SNP 337179 to 337779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:24,987 DEBUG Processing 106/743 atomic regions from SNP 31543 to 32143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,070 DEBUG Processing 223/757 atomic regions from SNP 66814 to 67414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,092 DEBUG Processing 131/714 atomic regions from SNP 39130 to 39731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,106 DEBUG Processing 311/866 atomic regions from SNP 93116 to 93716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,248 DEBUG Processing 107/743 atomic regions from SNP 31843 to 32443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,276 DEBUG Processing 1125/1143 atomic regions from SNP 337479 to 338079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:25,337 DEBUG Processing 224/757 atomic regions from SNP 67114 to 67714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,343 DEBUG Processing 132/714 atomic regions from SNP 39431 to 40032 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,369 DEBUG Processing 312/866 atomic regions from SNP 93416 to 94016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,500 DEBUG Processing 108/743 atomic regions from SNP 32143 to 32743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,595 DEBUG Processing 133/714 atomic regions from SNP 39732 to 40333 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,608 DEBUG Processing 225/757 atomic regions from SNP 67414 to 68014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,611 DEBUG Processing 1126/1143 atomic regions from SNP 337779 to 338379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:25,633 DEBUG Processing 313/866 atomic regions from SNP 93716 to 94316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,766 DEBUG Processing 109/743 atomic regions from SNP 32443 to 33043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,847 DEBUG Processing 134/714 atomic regions from SNP 40033 to 40634 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,886 DEBUG Processing 226/757 atomic regions from SNP 67714 to 68314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,913 DEBUG Processing 314/866 atomic regions from SNP 94016 to 94616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,947 DEBUG Processing 1127/1143 atomic regions from SNP 338079 to 338679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:26,031 DEBUG Processing 110/743 atomic regions from SNP 32743 to 33343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,096 DEBUG Processing 135/714 atomic regions from SNP 40334 to 40935 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,149 DEBUG Processing 227/757 atomic regions from SNP 68014 to 68614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,172 DEBUG Processing 315/866 atomic regions from SNP 94316 to 94916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,269 DEBUG Processing 1128/1143 atomic regions from SNP 338379 to 338979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:26,288 DEBUG Processing 111/743 atomic regions from SNP 33043 to 33643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,339 DEBUG Processing 136/714 atomic regions from SNP 40635 to 41236 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,407 DEBUG Processing 228/757 atomic regions from SNP 68314 to 68914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,431 DEBUG Processing 316/866 atomic regions from SNP 94616 to 95216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,538 DEBUG Processing 112/743 atomic regions from SNP 33343 to 33943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,598 DEBUG Processing 137/714 atomic regions from SNP 40936 to 41537 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,602 DEBUG Processing 1129/1143 atomic regions from SNP 338679 to 339279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:26,665 DEBUG Processing 229/757 atomic regions from SNP 68614 to 69214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,690 DEBUG Processing 317/866 atomic regions from SNP 94916 to 95516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,787 DEBUG Processing 113/743 atomic regions from SNP 33643 to 34243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,874 DEBUG Processing 138/714 atomic regions from SNP 41237 to 41838 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,920 DEBUG Processing 1130/1143 atomic regions from SNP 338979 to 339579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:26,933 DEBUG Processing 230/757 atomic regions from SNP 68914 to 69514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,952 DEBUG Processing 318/866 atomic regions from SNP 95216 to 95816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,028 DEBUG Processing 114/743 atomic regions from SNP 33943 to 34543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,148 DEBUG Processing 139/714 atomic regions from SNP 41538 to 42139 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,204 DEBUG Processing 231/757 atomic regions from SNP 69214 to 69814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,226 DEBUG Processing 319/866 atomic regions from SNP 95516 to 96116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,245 DEBUG Processing 1131/1143 atomic regions from SNP 339279 to 339879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:27,278 DEBUG Processing 115/743 atomic regions from SNP 34243 to 34843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,420 DEBUG Processing 140/714 atomic regions from SNP 41839 to 42440 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,484 DEBUG Processing 232/757 atomic regions from SNP 69514 to 70114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,495 DEBUG Processing 320/866 atomic regions from SNP 95816 to 96416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,532 DEBUG Processing 116/743 atomic regions from SNP 34543 to 35143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,573 DEBUG Processing 1132/1143 atomic regions from SNP 339579 to 340179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:27,688 DEBUG Processing 141/714 atomic regions from SNP 42140 to 42741 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,770 DEBUG Processing 233/757 atomic regions from SNP 69814 to 70414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,781 DEBUG Processing 321/866 atomic regions from SNP 96116 to 96716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,815 DEBUG Processing 117/743 atomic regions from SNP 34843 to 35443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,941 DEBUG Processing 1133/1143 atomic regions from SNP 339879 to 340479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:27,951 DEBUG Processing 142/714 atomic regions from SNP 42441 to 43042 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,038 DEBUG Processing 234/757 atomic regions from SNP 70114 to 70714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,039 DEBUG Processing 322/866 atomic regions from SNP 96416 to 97016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,053 DEBUG Processing 118/743 atomic regions from SNP 35143 to 35743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,195 DEBUG Processing 143/714 atomic regions from SNP 42742 to 43343 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,266 DEBUG Processing 1134/1143 atomic regions from SNP 340179 to 340779 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:28,300 DEBUG Processing 119/743 atomic regions from SNP 35443 to 36043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,301 DEBUG Processing 235/757 atomic regions from SNP 70414 to 71014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,302 DEBUG Processing 323/866 atomic regions from SNP 96716 to 97316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,442 DEBUG Processing 144/714 atomic regions from SNP 43043 to 43644 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,548 DEBUG Processing 120/743 atomic regions from SNP 35743 to 36343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,561 DEBUG Processing 236/757 atomic regions from SNP 70714 to 71314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,565 DEBUG Processing 324/866 atomic regions from SNP 97016 to 97616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,597 DEBUG Processing 1135/1143 atomic regions from SNP 340479 to 341079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:28,675 DEBUG Processing 145/714 atomic regions from SNP 43344 to 43945 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,802 DEBUG Processing 121/743 atomic regions from SNP 36043 to 36643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,841 DEBUG Processing 325/866 atomic regions from SNP 97316 to 97916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,841 DEBUG Processing 237/757 atomic regions from SNP 71014 to 71614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,920 DEBUG Processing 1136/1143 atomic regions from SNP 340779 to 341379 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:28,923 DEBUG Processing 146/714 atomic regions from SNP 43645 to 44246 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,038 DEBUG Processing 122/743 atomic regions from SNP 36343 to 36943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,088 DEBUG Processing 238/757 atomic regions from SNP 71314 to 71914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,097 DEBUG Processing 326/866 atomic regions from SNP 97616 to 98216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,163 DEBUG Processing 147/714 atomic regions from SNP 43946 to 44547 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,222 DEBUG Processing 1137/1143 atomic regions from SNP 341079 to 341679 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:29,278 DEBUG Processing 123/743 atomic regions from SNP 36643 to 37243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,347 DEBUG Processing 239/757 atomic regions from SNP 71614 to 72214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,361 DEBUG Processing 327/866 atomic regions from SNP 97916 to 98516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,414 DEBUG Processing 148/714 atomic regions from SNP 44247 to 44848 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,524 DEBUG Processing 124/743 atomic regions from SNP 36943 to 37543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,532 DEBUG Processing 1138/1143 atomic regions from SNP 341379 to 341979 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:29,615 DEBUG Processing 240/757 atomic regions from SNP 71914 to 72514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,617 DEBUG Processing 328/866 atomic regions from SNP 98216 to 98816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,661 DEBUG Processing 149/714 atomic regions from SNP 44548 to 45149 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,781 DEBUG Processing 125/743 atomic regions from SNP 37243 to 37843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,838 DEBUG Processing 1139/1143 atomic regions from SNP 341679 to 342279 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:29,876 DEBUG Processing 329/866 atomic regions from SNP 98516 to 99116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,885 DEBUG Processing 241/757 atomic regions from SNP 72214 to 72814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,909 DEBUG Processing 150/714 atomic regions from SNP 44849 to 45450 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,028 DEBUG Processing 126/743 atomic regions from SNP 37543 to 38143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,137 DEBUG Processing 330/866 atomic regions from SNP 98816 to 99416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,143 DEBUG Processing 242/757 atomic regions from SNP 72514 to 73114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,147 DEBUG Processing 1140/1143 atomic regions from SNP 341979 to 342579 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:30,156 DEBUG Processing 151/714 atomic regions from SNP 45150 to 45751 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,274 DEBUG Processing 127/743 atomic regions from SNP 37843 to 38443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,405 DEBUG Processing 331/866 atomic regions from SNP 99116 to 99716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,408 DEBUG Processing 243/757 atomic regions from SNP 72814 to 73414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,409 DEBUG Processing 152/714 atomic regions from SNP 45451 to 46052 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,487 DEBUG Processing 1141/1143 atomic regions from SNP 342279 to 342879 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:30,518 DEBUG Processing 128/743 atomic regions from SNP 38143 to 38743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,653 DEBUG Processing 153/714 atomic regions from SNP 45752 to 46353 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,664 DEBUG Processing 244/757 atomic regions from SNP 73114 to 73714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,665 DEBUG Processing 332/866 atomic regions from SNP 99416 to 100016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,765 DEBUG Processing 129/743 atomic regions from SNP 38443 to 39043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,821 DEBUG Processing 1142/1143 atomic regions from SNP 342579 to 343179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:30,900 DEBUG Processing 154/714 atomic regions from SNP 46053 to 46654 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,914 DEBUG Processing 245/757 atomic regions from SNP 73414 to 74014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,924 DEBUG Processing 333/866 atomic regions from SNP 99716 to 100316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,005 DEBUG Processing 130/743 atomic regions from SNP 38743 to 39343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,125 DEBUG Processing 1143/1143 atomic regions from SNP 342879 to 343479 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:31,143 DEBUG Processing 155/714 atomic regions from SNP 46354 to 46955 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,170 DEBUG Processing 246/757 atomic regions from SNP 73714 to 74314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,186 DEBUG Processing 334/866 atomic regions from SNP 100016 to 100616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,249 DEBUG Processing 131/743 atomic regions from SNP 39043 to 39643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,284 DEBUG Unique SNPs positions in subchromosome 1: 343480 2025-01-31 09:50:31,390 DEBUG Processing 156/714 atomic regions from SNP 46655 to 47256 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,421 DEBUG Processing 247/757 atomic regions from SNP 74014 to 74614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,453 DEBUG Processing 335/866 atomic regions from SNP 100316 to 100916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,493 DEBUG Processing 132/743 atomic regions from SNP 39343 to 39943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,625 DEBUG Processing 157/714 atomic regions from SNP 46956 to 47557 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,662 DEBUG Processing 248/757 atomic regions from SNP 74314 to 74914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,710 DEBUG Processing 336/866 atomic regions from SNP 100616 to 101216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,731 DEBUG Processing 133/743 atomic regions from SNP 39643 to 40243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,813 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:50:31,865 DEBUG Processing 158/714 atomic regions from SNP 47257 to 47858 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,908 DEBUG Processing 249/757 atomic regions from SNP 74614 to 75214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,969 DEBUG Processing 337/866 atomic regions from SNP 100916 to 101516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,988 DEBUG Processing 134/743 atomic regions from SNP 39943 to 40543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,106 DEBUG Processing 159/714 atomic regions from SNP 47558 to 48159 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,162 DEBUG Processing 250/757 atomic regions from SNP 74914 to 75514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,230 DEBUG Processing 338/866 atomic regions from SNP 101216 to 101816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,261 DEBUG Processing 135/743 atomic regions from SNP 40243 to 40843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,351 DEBUG Processing 160/714 atomic regions from SNP 47859 to 48460 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,408 DEBUG Processing 251/757 atomic regions from SNP 75214 to 75814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,488 DEBUG Processing 339/866 atomic regions from SNP 101516 to 102116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,530 DEBUG Processing 136/743 atomic regions from SNP 40543 to 41143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,592 DEBUG Processing 161/714 atomic regions from SNP 48160 to 48761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,645 DEBUG Processing 252/757 atomic regions from SNP 75514 to 76114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,747 DEBUG Processing 340/866 atomic regions from SNP 101816 to 102416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,780 DEBUG Processing 137/743 atomic regions from SNP 40843 to 41443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,839 DEBUG Processing 162/714 atomic regions from SNP 48461 to 49062 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,886 DEBUG Processing 253/757 atomic regions from SNP 75814 to 76414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,008 DEBUG Processing 341/866 atomic regions from SNP 102116 to 102716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,029 DEBUG Processing 138/743 atomic regions from SNP 41143 to 41743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,096 DEBUG Processing 163/714 atomic regions from SNP 48762 to 49363 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,136 DEBUG Processing 254/757 atomic regions from SNP 76114 to 76714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,281 DEBUG Processing 342/866 atomic regions from SNP 102416 to 103016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,287 DEBUG Processing 139/743 atomic regions from SNP 41443 to 42043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,362 DEBUG Processing 164/714 atomic regions from SNP 49063 to 49664 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,397 DEBUG Processing 255/757 atomic regions from SNP 76414 to 77014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,536 DEBUG Processing 140/743 atomic regions from SNP 41743 to 42343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,545 DEBUG Processing 343/866 atomic regions from SNP 102716 to 103316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,615 DEBUG Processing 165/714 atomic regions from SNP 49364 to 49965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,644 DEBUG Processing 256/757 atomic regions from SNP 76714 to 77314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,773 DEBUG Processing 141/743 atomic regions from SNP 42043 to 42643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,797 DEBUG Processing 344/866 atomic regions from SNP 103016 to 103616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,859 DEBUG Processing 166/714 atomic regions from SNP 49665 to 50266 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,888 DEBUG Processing 257/757 atomic regions from SNP 77014 to 77614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,015 DEBUG Processing 142/743 atomic regions from SNP 42343 to 42943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,050 DEBUG Processing 345/866 atomic regions from SNP 103316 to 103916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,107 DEBUG Processing 167/714 atomic regions from SNP 49966 to 50567 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,142 DEBUG Processing 258/757 atomic regions from SNP 77314 to 77914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,254 DEBUG Processing 143/743 atomic regions from SNP 42643 to 43243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,307 DEBUG Processing 346/866 atomic regions from SNP 103616 to 104216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,350 DEBUG Processing 168/714 atomic regions from SNP 50267 to 50868 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,388 DEBUG Processing 259/757 atomic regions from SNP 77614 to 78214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,494 DEBUG Processing 144/743 atomic regions from SNP 42943 to 43543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,571 DEBUG Processing 347/866 atomic regions from SNP 103916 to 104516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,610 DEBUG Processing 169/714 atomic regions from SNP 50568 to 51169 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,637 DEBUG Processing 260/757 atomic regions from SNP 77914 to 78514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,740 DEBUG Processing 145/743 atomic regions from SNP 43243 to 43843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,826 DEBUG Processing 348/866 atomic regions from SNP 104216 to 104816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,853 DEBUG Processing 170/714 atomic regions from SNP 50869 to 51470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,882 DEBUG Processing 261/757 atomic regions from SNP 78214 to 78814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,985 DEBUG Processing 146/743 atomic regions from SNP 43543 to 44143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,080 DEBUG Processing 349/866 atomic regions from SNP 104516 to 105116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,096 DEBUG Processing 171/714 atomic regions from SNP 51170 to 51771 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,130 DEBUG Processing 262/757 atomic regions from SNP 78514 to 79114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,230 DEBUG Processing 147/743 atomic regions from SNP 43843 to 44443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,339 DEBUG Processing 350/866 atomic regions from SNP 104816 to 105416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,340 DEBUG Processing 172/714 atomic regions from SNP 51471 to 52072 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,380 DEBUG Processing 263/757 atomic regions from SNP 78814 to 79414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,476 DEBUG Processing 148/743 atomic regions from SNP 44143 to 44743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,585 DEBUG Processing 173/714 atomic regions from SNP 51772 to 52373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,596 DEBUG Processing 351/866 atomic regions from SNP 105116 to 105716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,627 DEBUG Processing 264/757 atomic regions from SNP 79114 to 79714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,716 DEBUG Processing 149/743 atomic regions from SNP 44443 to 45043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,827 DEBUG Processing 174/714 atomic regions from SNP 52073 to 52674 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,853 DEBUG Processing 352/866 atomic regions from SNP 105416 to 106016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,872 DEBUG Processing 265/757 atomic regions from SNP 79414 to 80014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,956 DEBUG Processing 150/743 atomic regions from SNP 44743 to 45343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,070 DEBUG Processing 175/714 atomic regions from SNP 52374 to 52975 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,111 DEBUG Processing 353/866 atomic regions from SNP 105716 to 106316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,122 DEBUG Processing 266/757 atomic regions from SNP 79714 to 80314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,202 DEBUG Processing 151/743 atomic regions from SNP 45043 to 45643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,318 DEBUG Processing 176/714 atomic regions from SNP 52675 to 53276 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,376 DEBUG Processing 267/757 atomic regions from SNP 80014 to 80614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,388 DEBUG Processing 354/866 atomic regions from SNP 106016 to 106616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,446 DEBUG Processing 152/743 atomic regions from SNP 45343 to 45943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,564 DEBUG Processing 177/714 atomic regions from SNP 52976 to 53577 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,625 DEBUG Processing 268/757 atomic regions from SNP 80314 to 80914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,649 DEBUG Processing 355/866 atomic regions from SNP 106316 to 106916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,692 DEBUG Processing 153/743 atomic regions from SNP 45643 to 46243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,812 DEBUG Processing 178/714 atomic regions from SNP 53277 to 53878 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,875 DEBUG Processing 269/757 atomic regions from SNP 80614 to 81214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,910 DEBUG Processing 356/866 atomic regions from SNP 106616 to 107216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,937 DEBUG Processing 154/743 atomic regions from SNP 45943 to 46543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,057 DEBUG Processing 179/714 atomic regions from SNP 53578 to 54179 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,121 DEBUG Processing 270/757 atomic regions from SNP 80914 to 81514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,168 DEBUG Processing 357/866 atomic regions from SNP 106916 to 107516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,177 DEBUG Processing 155/743 atomic regions from SNP 46243 to 46843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,301 DEBUG Processing 180/714 atomic regions from SNP 53879 to 54480 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,367 DEBUG Processing 271/757 atomic regions from SNP 81214 to 81814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,423 DEBUG Processing 156/743 atomic regions from SNP 46543 to 47143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,432 DEBUG Processing 358/866 atomic regions from SNP 107216 to 107816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,547 DEBUG Processing 181/714 atomic regions from SNP 54180 to 54781 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,615 DEBUG Processing 272/757 atomic regions from SNP 81514 to 82114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,660 DEBUG Processing 157/743 atomic regions from SNP 46843 to 47443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,685 DEBUG Processing 359/866 atomic regions from SNP 107516 to 108116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,784 DEBUG Processing 182/714 atomic regions from SNP 54481 to 55082 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,865 DEBUG Processing 273/757 atomic regions from SNP 81814 to 82414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,902 DEBUG Processing 158/743 atomic regions from SNP 47143 to 47743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,947 DEBUG Processing 360/866 atomic regions from SNP 107816 to 108416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,047 DEBUG Processing 183/714 atomic regions from SNP 54782 to 55383 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,136 DEBUG Processing 274/757 atomic regions from SNP 82114 to 82714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,147 DEBUG Processing 159/743 atomic regions from SNP 47443 to 48043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,215 DEBUG Processing 361/866 atomic regions from SNP 108116 to 108716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,285 DEBUG Processing 184/714 atomic regions from SNP 55083 to 55684 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,393 DEBUG Processing 275/757 atomic regions from SNP 82414 to 83014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,397 DEBUG Processing 160/743 atomic regions from SNP 47743 to 48343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,476 DEBUG Processing 362/866 atomic regions from SNP 108416 to 109016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,528 DEBUG Processing 185/714 atomic regions from SNP 55384 to 55985 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,644 DEBUG Processing 161/743 atomic regions from SNP 48043 to 48643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,648 DEBUG Processing 276/757 atomic regions from SNP 82714 to 83314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,732 DEBUG Processing 363/866 atomic regions from SNP 108716 to 109316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,765 DEBUG Processing 186/714 atomic regions from SNP 55685 to 56286 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,885 DEBUG Processing 162/743 atomic regions from SNP 48343 to 48943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,893 DEBUG Processing 277/757 atomic regions from SNP 83014 to 83614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,991 DEBUG Processing 364/866 atomic regions from SNP 109016 to 109616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,006 DEBUG Processing 187/714 atomic regions from SNP 55986 to 56587 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,126 DEBUG Processing 163/743 atomic regions from SNP 48643 to 49243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,139 DEBUG Processing 278/757 atomic regions from SNP 83314 to 83914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,247 DEBUG Processing 188/714 atomic regions from SNP 56287 to 56888 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,248 DEBUG Processing 365/866 atomic regions from SNP 109316 to 109916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,365 DEBUG Processing 164/743 atomic regions from SNP 48943 to 49543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,382 DEBUG Processing 279/757 atomic regions from SNP 83614 to 84214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,487 DEBUG Processing 189/714 atomic regions from SNP 56588 to 57189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,500 DEBUG Processing 366/866 atomic regions from SNP 109616 to 110216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,606 DEBUG Processing 165/743 atomic regions from SNP 49243 to 49843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,624 DEBUG Processing 280/757 atomic regions from SNP 83914 to 84514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,727 DEBUG Processing 190/714 atomic regions from SNP 56889 to 57490 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,751 DEBUG Processing 367/866 atomic regions from SNP 109916 to 110516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,850 DEBUG Processing 166/743 atomic regions from SNP 49543 to 50143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,870 DEBUG Processing 281/757 atomic regions from SNP 84214 to 84814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,966 DEBUG Processing 191/714 atomic regions from SNP 57190 to 57791 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,011 DEBUG Processing 368/866 atomic regions from SNP 110216 to 110816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,100 DEBUG Processing 167/743 atomic regions from SNP 49843 to 50443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,117 DEBUG Processing 282/757 atomic regions from SNP 84514 to 85114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,206 DEBUG Processing 192/714 atomic regions from SNP 57491 to 58092 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,264 DEBUG Processing 369/866 atomic regions from SNP 110516 to 111116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,348 DEBUG Processing 168/743 atomic regions from SNP 50143 to 50743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,369 DEBUG Processing 283/757 atomic regions from SNP 84814 to 85414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,446 DEBUG Processing 193/714 atomic regions from SNP 57792 to 58393 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,527 DEBUG Processing 370/866 atomic regions from SNP 110816 to 111416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,602 DEBUG Processing 169/743 atomic regions from SNP 50443 to 51043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,621 DEBUG Processing 284/757 atomic regions from SNP 85114 to 85714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,689 DEBUG Processing 194/714 atomic regions from SNP 58093 to 58694 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,785 DEBUG Processing 371/866 atomic regions from SNP 111116 to 111716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,848 DEBUG Processing 170/743 atomic regions from SNP 50743 to 51343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,867 DEBUG Processing 285/757 atomic regions from SNP 85414 to 86014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,926 DEBUG Processing 195/714 atomic regions from SNP 58394 to 58995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,038 DEBUG Processing 372/866 atomic regions from SNP 111416 to 112016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,085 DEBUG Processing 171/743 atomic regions from SNP 51043 to 51643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,113 DEBUG Processing 286/757 atomic regions from SNP 85714 to 86314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,166 DEBUG Processing 196/714 atomic regions from SNP 58695 to 59296 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,296 DEBUG Processing 373/866 atomic regions from SNP 111716 to 112316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,333 DEBUG Processing 172/743 atomic regions from SNP 51343 to 51943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,361 DEBUG Processing 287/757 atomic regions from SNP 86014 to 86614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,405 DEBUG Processing 197/714 atomic regions from SNP 58996 to 59597 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,556 DEBUG Processing 374/866 atomic regions from SNP 112016 to 112616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,583 DEBUG Processing 173/743 atomic regions from SNP 51643 to 52243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,609 DEBUG Processing 288/757 atomic regions from SNP 86314 to 86914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,648 DEBUG Processing 198/714 atomic regions from SNP 59297 to 59898 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,815 DEBUG Processing 375/866 atomic regions from SNP 112316 to 112916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,836 DEBUG Processing 174/743 atomic regions from SNP 51943 to 52543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,860 DEBUG Processing 289/757 atomic regions from SNP 86614 to 87214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,896 DEBUG Processing 199/714 atomic regions from SNP 59598 to 60199 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,071 DEBUG Processing 376/866 atomic regions from SNP 112616 to 113216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,095 DEBUG Processing 175/743 atomic regions from SNP 52243 to 52843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,107 DEBUG Processing 290/757 atomic regions from SNP 86914 to 87514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,142 DEBUG Processing 200/714 atomic regions from SNP 59899 to 60500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,349 DEBUG Processing 176/743 atomic regions from SNP 52543 to 53143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,354 DEBUG Processing 377/866 atomic regions from SNP 112916 to 113516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,358 DEBUG Processing 291/757 atomic regions from SNP 87214 to 87814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,390 DEBUG Processing 201/714 atomic regions from SNP 60200 to 60801 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,600 DEBUG Processing 177/743 atomic regions from SNP 52843 to 53443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,616 DEBUG Processing 292/757 atomic regions from SNP 87514 to 88114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,644 DEBUG Processing 378/866 atomic regions from SNP 113216 to 113816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,644 DEBUG Processing 202/714 atomic regions from SNP 60501 to 61102 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,846 DEBUG Processing 178/743 atomic regions from SNP 53143 to 53743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,868 DEBUG Processing 293/757 atomic regions from SNP 87814 to 88414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,896 DEBUG Processing 203/714 atomic regions from SNP 60802 to 61403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,910 DEBUG Processing 379/866 atomic regions from SNP 113516 to 114116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,097 DEBUG Processing 179/743 atomic regions from SNP 53443 to 54043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,122 DEBUG Processing 294/757 atomic regions from SNP 88114 to 88714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,149 DEBUG Processing 204/714 atomic regions from SNP 61103 to 61704 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,175 DEBUG Processing 380/866 atomic regions from SNP 113816 to 114416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,342 DEBUG Processing 180/743 atomic regions from SNP 53743 to 54343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,375 DEBUG Processing 295/757 atomic regions from SNP 88414 to 89014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,399 DEBUG Processing 205/714 atomic regions from SNP 61404 to 62005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,431 DEBUG Processing 381/866 atomic regions from SNP 114116 to 114716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,587 DEBUG Processing 181/743 atomic regions from SNP 54043 to 54643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,644 DEBUG Processing 296/757 atomic regions from SNP 88714 to 89314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,648 DEBUG Processing 206/714 atomic regions from SNP 61705 to 62306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,685 DEBUG Processing 382/866 atomic regions from SNP 114416 to 115016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,832 DEBUG Processing 182/743 atomic regions from SNP 54343 to 54943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,895 DEBUG Processing 207/714 atomic regions from SNP 62006 to 62607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,897 DEBUG Processing 297/757 atomic regions from SNP 89014 to 89614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,938 DEBUG Processing 383/866 atomic regions from SNP 114716 to 115316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,078 DEBUG Processing 183/743 atomic regions from SNP 54643 to 55243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,150 DEBUG Processing 208/714 atomic regions from SNP 62307 to 62908 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,158 DEBUG Processing 298/757 atomic regions from SNP 89314 to 89914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,194 DEBUG Processing 384/866 atomic regions from SNP 115016 to 115616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,327 DEBUG Processing 184/743 atomic regions from SNP 54943 to 55543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,405 DEBUG Processing 209/714 atomic regions from SNP 62608 to 63209 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,410 DEBUG Processing 299/757 atomic regions from SNP 89614 to 90214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,454 DEBUG Processing 385/866 atomic regions from SNP 115316 to 115916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,573 DEBUG Processing 185/743 atomic regions from SNP 55243 to 55843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,653 DEBUG Processing 210/714 atomic regions from SNP 62909 to 63510 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,659 DEBUG Processing 300/757 atomic regions from SNP 89914 to 90514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,710 DEBUG Processing 386/866 atomic regions from SNP 115616 to 116216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,820 DEBUG Processing 186/743 atomic regions from SNP 55543 to 56143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,898 DEBUG Processing 211/714 atomic regions from SNP 63210 to 63811 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,903 DEBUG Processing 301/757 atomic regions from SNP 90214 to 90814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,960 DEBUG Processing 387/866 atomic regions from SNP 115916 to 116516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,061 DEBUG Processing 187/743 atomic regions from SNP 55843 to 56443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,146 DEBUG Processing 212/714 atomic regions from SNP 63511 to 64112 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,150 DEBUG Processing 302/757 atomic regions from SNP 90514 to 91114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,211 DEBUG Processing 388/866 atomic regions from SNP 116216 to 116816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,299 DEBUG Processing 188/743 atomic regions from SNP 56143 to 56743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,353 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:50:45,354 DEBUG chr14: Signal quantile: 0.995. signal threshold: 12. Best RMSEA: 0.050 2025-01-31 09:50:45,391 DEBUG Processing 213/714 atomic regions from SNP 63812 to 64413 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,398 DEBUG Processing 303/757 atomic regions from SNP 90814 to 91414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,463 DEBUG Processing 389/866 atomic regions from SNP 116516 to 117116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,543 DEBUG Processing 189/743 atomic regions from SNP 56443 to 57043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,647 DEBUG Processing 304/757 atomic regions from SNP 91114 to 91714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,653 DEBUG Processing 214/714 atomic regions from SNP 64113 to 64714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,721 DEBUG Processing 390/866 atomic regions from SNP 116816 to 117416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,791 DEBUG Processing 190/743 atomic regions from SNP 56743 to 57343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,899 DEBUG Processing 305/757 atomic regions from SNP 91414 to 92014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,904 DEBUG Processing 215/714 atomic regions from SNP 64414 to 65015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,981 DEBUG Processing 391/866 atomic regions from SNP 117116 to 117716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,033 DEBUG Processing 191/743 atomic regions from SNP 57043 to 57643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,150 DEBUG Processing 306/757 atomic regions from SNP 91714 to 92314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,154 DEBUG Processing 216/714 atomic regions from SNP 64715 to 65316 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,238 DEBUG Processing 392/866 atomic regions from SNP 117416 to 118016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,270 DEBUG Processing 192/743 atomic regions from SNP 57343 to 57943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,399 DEBUG Processing 307/757 atomic regions from SNP 92014 to 92614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,401 DEBUG Processing 217/714 atomic regions from SNP 65016 to 65617 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,496 DEBUG Processing 393/866 atomic regions from SNP 117716 to 118316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,509 DEBUG Processing 193/743 atomic regions from SNP 57643 to 58243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,654 DEBUG Processing 218/714 atomic regions from SNP 65317 to 65918 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,654 DEBUG Processing 308/757 atomic regions from SNP 92314 to 92914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,755 DEBUG Processing 194/743 atomic regions from SNP 57943 to 58543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,760 DEBUG Processing 394/866 atomic regions from SNP 118016 to 118616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,907 DEBUG Processing 219/714 atomic regions from SNP 65618 to 66219 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,910 DEBUG Processing 309/757 atomic regions from SNP 92614 to 93214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,005 DEBUG Processing 195/743 atomic regions from SNP 58243 to 58843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,025 DEBUG Processing 395/866 atomic regions from SNP 118316 to 118916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,159 DEBUG Processing 220/714 atomic regions from SNP 65919 to 66520 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,163 DEBUG Processing 310/757 atomic regions from SNP 92914 to 93514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,250 DEBUG Processing 196/743 atomic regions from SNP 58543 to 59143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,293 DEBUG Processing 396/866 atomic regions from SNP 118616 to 119216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,402 DEBUG Processing 311/757 atomic regions from SNP 93214 to 93814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,422 DEBUG Processing 221/714 atomic regions from SNP 66220 to 66821 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,494 DEBUG Processing 197/743 atomic regions from SNP 58843 to 59443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,574 DEBUG Processing 397/866 atomic regions from SNP 118916 to 119516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,642 DEBUG Processing 312/757 atomic regions from SNP 93514 to 94114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,686 DEBUG Processing 222/714 atomic regions from SNP 66521 to 67122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,745 DEBUG Processing 198/743 atomic regions from SNP 59143 to 59743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,808 DEBUG chr14 total SNP count: 202979 2025-01-31 09:50:47,809 DEBUG chr14 length: 124902244 2025-01-31 09:50:47,809 DEBUG ----------------------------------------- 2025-01-31 09:50:47,809 INFO Processing SNPs in chr14 2025-01-31 09:50:47,845 DEBUG Processing 398/866 atomic regions from SNP 119216 to 119816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,886 DEBUG Processing 313/757 atomic regions from SNP 93814 to 94414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,934 DEBUG Processing 223/714 atomic regions from SNP 66822 to 67423 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,995 DEBUG Processing 199/743 atomic regions from SNP 59443 to 60043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,105 DEBUG Processing 399/866 atomic regions from SNP 119516 to 120116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,128 DEBUG Processing 314/757 atomic regions from SNP 94114 to 94714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,140 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 180), (180, 202979)] 2025-01-31 09:50:48,184 DEBUG Processing 224/714 atomic regions from SNP 67123 to 67724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,237 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:48,247 DEBUG Processing 200/743 atomic regions from SNP 59743 to 60343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,261 DEBUG Segmenting atomic regions: 2025-01-31 09:50:48,357 DEBUG Processing 1/1 atomic regions from SNP 0 to 179 for chr14 (subchromosome 1 of 2). 2025-01-31 09:50:48,367 DEBUG Unique SNPs positions in subchromosome 1: 180 2025-01-31 09:50:48,368 DEBUG Subchromosome time: 0.13110605999827385, subchromosome SNPs: 180 2025-01-31 09:50:48,374 DEBUG Processing 315/757 atomic regions from SNP 94414 to 95014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,378 DEBUG Processing 400/866 atomic regions from SNP 119816 to 120416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,422 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:48,432 DEBUG Processing 225/714 atomic regions from SNP 67424 to 68025 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,495 DEBUG Processing 201/743 atomic regions from SNP 60043 to 60643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,619 DEBUG Processing 316/757 atomic regions from SNP 94714 to 95314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,646 DEBUG Processing 401/866 atomic regions from SNP 120116 to 120716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,679 DEBUG Processing 226/714 atomic regions from SNP 67725 to 68326 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,746 DEBUG Processing 202/743 atomic regions from SNP 60343 to 60943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,864 DEBUG Processing 317/757 atomic regions from SNP 95014 to 95614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,913 DEBUG Processing 402/866 atomic regions from SNP 120416 to 121016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,928 DEBUG Processing 227/714 atomic regions from SNP 68026 to 68627 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,996 DEBUG Processing 203/743 atomic regions from SNP 60643 to 61243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,106 DEBUG Processing 318/757 atomic regions from SNP 95314 to 95914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,171 DEBUG Processing 228/714 atomic regions from SNP 68327 to 68928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,186 DEBUG Processing 403/866 atomic regions from SNP 120716 to 121316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,265 DEBUG Processing 204/743 atomic regions from SNP 60943 to 61543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,359 DEBUG Processing 319/757 atomic regions from SNP 95614 to 96214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,425 DEBUG Processing 229/714 atomic regions from SNP 68628 to 69229 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,466 DEBUG Processing 404/866 atomic regions from SNP 121016 to 121616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,518 DEBUG Processing 205/743 atomic regions from SNP 61243 to 61843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,604 DEBUG Processing 320/757 atomic regions from SNP 95914 to 96514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,669 DEBUG Processing 230/714 atomic regions from SNP 68929 to 69530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,750 DEBUG Processing 405/866 atomic regions from SNP 121316 to 121916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,769 DEBUG Processing 206/743 atomic regions from SNP 61543 to 62143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,851 DEBUG Processing 321/757 atomic regions from SNP 96214 to 96814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,909 DEBUG Processing 231/714 atomic regions from SNP 69230 to 69831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,019 DEBUG Processing 207/743 atomic regions from SNP 61843 to 62443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,042 DEBUG Processing 406/866 atomic regions from SNP 121616 to 122216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,099 DEBUG Processing 322/757 atomic regions from SNP 96514 to 97114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,150 DEBUG Processing 232/714 atomic regions from SNP 69531 to 70132 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,267 DEBUG Processing 208/743 atomic regions from SNP 62143 to 62743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,337 DEBUG Processing 407/866 atomic regions from SNP 121916 to 122516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,350 DEBUG Processing 323/757 atomic regions from SNP 96814 to 97414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,399 DEBUG Processing 233/714 atomic regions from SNP 69832 to 70433 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,514 DEBUG Processing 209/743 atomic regions from SNP 62443 to 63043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,620 DEBUG Processing 324/757 atomic regions from SNP 97114 to 97714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,633 DEBUG Processing 408/866 atomic regions from SNP 122216 to 122816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,669 DEBUG Processing 234/714 atomic regions from SNP 70133 to 70734 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,766 DEBUG Processing 210/743 atomic regions from SNP 62743 to 63343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,870 DEBUG Processing 325/757 atomic regions from SNP 97414 to 98014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,911 DEBUG Processing 409/866 atomic regions from SNP 122516 to 123116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,931 DEBUG Processing 235/714 atomic regions from SNP 70434 to 71035 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,007 DEBUG Processing 211/743 atomic regions from SNP 63043 to 63643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,122 DEBUG Processing 326/757 atomic regions from SNP 97714 to 98314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,180 DEBUG Processing 236/714 atomic regions from SNP 70735 to 71336 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,181 DEBUG Processing 410/866 atomic regions from SNP 122816 to 123416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,245 DEBUG Processing 212/743 atomic regions from SNP 63343 to 63943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,371 DEBUG Processing 327/757 atomic regions from SNP 98014 to 98614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,423 DEBUG Processing 237/714 atomic regions from SNP 71036 to 71637 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,445 DEBUG Processing 411/866 atomic regions from SNP 123116 to 123716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,484 DEBUG Processing 213/743 atomic regions from SNP 63643 to 64243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,620 DEBUG Processing 328/757 atomic regions from SNP 98314 to 98914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,672 DEBUG Processing 238/714 atomic regions from SNP 71337 to 71938 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,704 DEBUG Processing 412/866 atomic regions from SNP 123416 to 124016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,736 DEBUG Processing 214/743 atomic regions from SNP 63943 to 64543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,882 DEBUG Processing 329/757 atomic regions from SNP 98614 to 99214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,926 DEBUG Processing 239/714 atomic regions from SNP 71638 to 72239 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,969 DEBUG Processing 413/866 atomic regions from SNP 123716 to 124316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,983 DEBUG Processing 215/743 atomic regions from SNP 64243 to 64843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,149 DEBUG Processing 330/757 atomic regions from SNP 98914 to 99514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,179 DEBUG Processing 240/714 atomic regions from SNP 71939 to 72540 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,226 DEBUG Processing 216/743 atomic regions from SNP 64543 to 65143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,227 DEBUG Processing 414/866 atomic regions from SNP 124016 to 124616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,406 DEBUG Processing 331/757 atomic regions from SNP 99214 to 99814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,440 DEBUG Processing 241/714 atomic regions from SNP 72240 to 72841 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,468 DEBUG Processing 217/743 atomic regions from SNP 64843 to 65443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,485 DEBUG Processing 415/866 atomic regions from SNP 124316 to 124916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,661 DEBUG Processing 332/757 atomic regions from SNP 99514 to 100114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,689 DEBUG Processing 242/714 atomic regions from SNP 72541 to 73142 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,710 DEBUG Processing 218/743 atomic regions from SNP 65143 to 65743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,744 DEBUG Processing 416/866 atomic regions from SNP 124616 to 125216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,928 DEBUG Processing 333/757 atomic regions from SNP 99814 to 100414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,953 DEBUG Processing 243/714 atomic regions from SNP 72842 to 73443 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,953 DEBUG Processing 219/743 atomic regions from SNP 65443 to 66043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,005 DEBUG Processing 417/866 atomic regions from SNP 124916 to 125516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,197 DEBUG Processing 220/743 atomic regions from SNP 65743 to 66343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,207 DEBUG Processing 244/714 atomic regions from SNP 73143 to 73744 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,211 DEBUG Processing 334/757 atomic regions from SNP 100114 to 100714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,266 DEBUG Processing 418/866 atomic regions from SNP 125216 to 125816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,441 DEBUG Processing 221/743 atomic regions from SNP 66043 to 66643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,462 DEBUG Processing 245/714 atomic regions from SNP 73444 to 74045 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,483 DEBUG Processing 335/757 atomic regions from SNP 100414 to 101014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,527 DEBUG Processing 419/866 atomic regions from SNP 125516 to 126116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,686 DEBUG Processing 222/743 atomic regions from SNP 66343 to 66943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,720 DEBUG Processing 246/714 atomic regions from SNP 73745 to 74346 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,755 DEBUG Processing 336/757 atomic regions from SNP 100714 to 101314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,802 DEBUG Processing 420/866 atomic regions from SNP 125816 to 126416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,928 DEBUG Processing 223/743 atomic regions from SNP 66643 to 67243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,975 DEBUG Processing 247/714 atomic regions from SNP 74046 to 74647 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,032 DEBUG Processing 337/757 atomic regions from SNP 101014 to 101614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,064 DEBUG Processing 421/866 atomic regions from SNP 126116 to 126716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,174 DEBUG Processing 224/743 atomic regions from SNP 66943 to 67543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,225 DEBUG Processing 248/714 atomic regions from SNP 74347 to 74948 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,307 DEBUG Processing 338/757 atomic regions from SNP 101314 to 101914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,326 DEBUG Processing 422/866 atomic regions from SNP 126416 to 127016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,417 DEBUG Processing 225/743 atomic regions from SNP 67243 to 67843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,470 DEBUG Processing 249/714 atomic regions from SNP 74648 to 75249 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,577 DEBUG Processing 339/757 atomic regions from SNP 101614 to 102214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,588 DEBUG Processing 423/866 atomic regions from SNP 126716 to 127316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,664 DEBUG Processing 226/743 atomic regions from SNP 67543 to 68143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,717 DEBUG Processing 250/714 atomic regions from SNP 74949 to 75550 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,849 DEBUG Processing 340/757 atomic regions from SNP 101914 to 102514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,851 DEBUG Processing 424/866 atomic regions from SNP 127016 to 127616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,908 DEBUG Processing 227/743 atomic regions from SNP 67843 to 68443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,963 DEBUG Processing 251/714 atomic regions from SNP 75250 to 75851 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,113 DEBUG Processing 425/866 atomic regions from SNP 127316 to 127916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,119 DEBUG Processing 341/757 atomic regions from SNP 102214 to 102814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,162 DEBUG Processing 228/743 atomic regions from SNP 68143 to 68743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,207 DEBUG Processing 252/714 atomic regions from SNP 75551 to 76152 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,376 DEBUG Processing 426/866 atomic regions from SNP 127616 to 128216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,384 DEBUG Processing 342/757 atomic regions from SNP 102514 to 103114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,409 DEBUG Processing 229/743 atomic regions from SNP 68443 to 69043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,454 DEBUG Processing 253/714 atomic regions from SNP 75852 to 76453 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,640 DEBUG Processing 427/866 atomic regions from SNP 127916 to 128516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,655 DEBUG Processing 230/743 atomic regions from SNP 68743 to 69343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,658 DEBUG Processing 343/757 atomic regions from SNP 102814 to 103414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,702 DEBUG Processing 254/714 atomic regions from SNP 76153 to 76754 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,910 DEBUG Processing 231/743 atomic regions from SNP 69043 to 69643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,915 DEBUG Processing 428/866 atomic regions from SNP 128216 to 128816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,941 DEBUG Processing 344/757 atomic regions from SNP 103114 to 103714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,958 DEBUG Processing 255/714 atomic regions from SNP 76454 to 77055 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,159 DEBUG Processing 232/743 atomic regions from SNP 69343 to 69943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,188 DEBUG Processing 429/866 atomic regions from SNP 128516 to 129116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,212 DEBUG Processing 256/714 atomic regions from SNP 76755 to 77356 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,222 DEBUG Processing 345/757 atomic regions from SNP 103414 to 104014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,401 DEBUG Processing 233/743 atomic regions from SNP 69643 to 70243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,453 DEBUG Processing 430/866 atomic regions from SNP 128816 to 129416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,465 DEBUG Processing 257/714 atomic regions from SNP 77056 to 77657 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,494 DEBUG Processing 346/757 atomic regions from SNP 103714 to 104314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,644 DEBUG Processing 234/743 atomic regions from SNP 69943 to 70543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,709 DEBUG Processing 258/714 atomic regions from SNP 77357 to 77958 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,717 DEBUG Processing 431/866 atomic regions from SNP 129116 to 129716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,767 DEBUG Processing 347/757 atomic regions from SNP 104014 to 104614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,886 DEBUG Processing 235/743 atomic regions from SNP 70243 to 70843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,956 DEBUG Processing 259/714 atomic regions from SNP 77658 to 78259 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,979 DEBUG Processing 432/866 atomic regions from SNP 129416 to 130016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,039 DEBUG Processing 348/757 atomic regions from SNP 104314 to 104914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,048 DEBUG Subchromosome time: 412.5344074780587, subchromosome SNPs: 343480 2025-01-31 09:50:57,049 DEBUG Estimated BADs: [1.14, 4.56, 2.28, 1.14, 2.28, 6.85, 2.28, 4.56, 1.14, 2.28, 0.76, 2.28, 4.56, 2.28, 0.76, 2.28, 4.56, 2.28, 4.56, 2.28, 4.56, 2.28] SNP counts: [52468, 11749, 8126, 13617, 39807, 2713, 17288, 15431, 17943, 6329, 15307, 25489, 9612, 6587, 16495, 10194, 3021, 41802, 11001, 9891, 2396, 6214] SNP IDs counts: [52468, 11749, 8126, 13617, 39807, 2713, 17288, 15431, 17943, 6329, 15307, 25489, 9612, 6587, 16495, 10194, 3021, 41802, 11001, 9891, 2396, 6214] Critical gap: 754313bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 33.37Mbp, 39.66Mbp, 44.01Mbp, 52.02Mbp, 73.91Mbp, 75.39Mbp, 84.99Mbp, 93.65Mbp, 104.31Mbp, 107.86Mbp, 116.81Mbp, 130.99Mbp, 136.01Mbp, 139.59Mbp, 149.42Mbp, 154.94Mbp, 156.58Mbp, 179.48Mbp, 185.45Mbp, 190.69Mbp, 191.96Mbp, 195.47Mbp] 2025-01-31 09:50:57,049 DEBUG chr1 time: 412.5350720930146 s 2025-01-31 09:50:57,128 DEBUG Processing 236/743 atomic regions from SNP 70543 to 71143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,203 DEBUG Processing 260/714 atomic regions from SNP 77959 to 78560 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,241 DEBUG Processing 433/866 atomic regions from SNP 129716 to 130316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,266 DEBUG chr1: Fitting background model for 22 segments 2025-01-31 09:50:57,323 DEBUG Processing 349/757 atomic regions from SNP 104614 to 105214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,386 DEBUG Processing 237/743 atomic regions from SNP 70843 to 71443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,450 DEBUG Processing 261/714 atomic regions from SNP 78260 to 78861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,505 DEBUG Processing 434/866 atomic regions from SNP 130016 to 130616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,600 DEBUG Processing 350/757 atomic regions from SNP 104914 to 105514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,635 DEBUG Processing 238/743 atomic regions from SNP 71143 to 71743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,701 DEBUG Processing 262/714 atomic regions from SNP 78561 to 79161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,767 DEBUG Processing 435/866 atomic regions from SNP 130316 to 130916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,870 DEBUG Processing 351/757 atomic regions from SNP 105214 to 105814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,885 DEBUG Processing 239/743 atomic regions from SNP 71443 to 72043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,949 DEBUG Processing 263/714 atomic regions from SNP 78861 to 79461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,028 DEBUG Processing 436/866 atomic regions from SNP 130616 to 131216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,131 DEBUG Processing 240/743 atomic regions from SNP 71743 to 72343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,136 DEBUG Processing 352/757 atomic regions from SNP 105514 to 106114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,198 DEBUG Processing 264/714 atomic regions from SNP 79161 to 79761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,291 DEBUG Processing 437/866 atomic regions from SNP 130916 to 131516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,383 DEBUG Processing 241/743 atomic regions from SNP 72043 to 72643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,408 DEBUG Processing 353/757 atomic regions from SNP 105814 to 106414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,452 DEBUG Processing 265/714 atomic regions from SNP 79461 to 80061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,563 DEBUG Processing 438/866 atomic regions from SNP 131216 to 131816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,642 DEBUG Processing 242/743 atomic regions from SNP 72343 to 72943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,690 DEBUG Processing 354/757 atomic regions from SNP 106114 to 106714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,712 DEBUG Processing 266/714 atomic regions from SNP 79761 to 80361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,827 DEBUG Processing 439/866 atomic regions from SNP 131516 to 132116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,894 DEBUG Processing 243/743 atomic regions from SNP 72643 to 73243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,960 DEBUG Processing 267/714 atomic regions from SNP 80061 to 80661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,962 DEBUG Processing 355/757 atomic regions from SNP 106414 to 107014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,088 DEBUG Processing 440/866 atomic regions from SNP 131816 to 132416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,146 DEBUG Processing 244/743 atomic regions from SNP 72943 to 73543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,212 DEBUG Processing 268/714 atomic regions from SNP 80361 to 80961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,245 DEBUG Processing 356/757 atomic regions from SNP 106714 to 107314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,355 DEBUG Processing 441/866 atomic regions from SNP 132116 to 132716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,393 DEBUG Processing 245/743 atomic regions from SNP 73243 to 73843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,459 DEBUG Processing 269/714 atomic regions from SNP 80661 to 81261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,504 DEBUG Processing 357/757 atomic regions from SNP 107014 to 107614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,616 DEBUG Processing 442/866 atomic regions from SNP 132416 to 133016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,640 DEBUG Processing 246/743 atomic regions from SNP 73543 to 74143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,708 DEBUG Processing 270/714 atomic regions from SNP 80961 to 81561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,758 DEBUG Processing 358/757 atomic regions from SNP 107314 to 107914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,877 DEBUG Processing 443/866 atomic regions from SNP 132716 to 133316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,892 DEBUG Processing 247/743 atomic regions from SNP 73843 to 74443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,960 DEBUG Processing 271/714 atomic regions from SNP 81261 to 81861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,017 DEBUG Processing 359/757 atomic regions from SNP 107614 to 108214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,141 DEBUG Processing 444/866 atomic regions from SNP 133016 to 133616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,145 DEBUG Processing 248/743 atomic regions from SNP 74143 to 74743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,207 DEBUG Processing 272/714 atomic regions from SNP 81561 to 82161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,274 DEBUG Processing 360/757 atomic regions from SNP 107914 to 108514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,404 DEBUG Processing 445/866 atomic regions from SNP 133316 to 133916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,407 DEBUG Processing 249/743 atomic regions from SNP 74443 to 75043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,457 DEBUG Processing 273/714 atomic regions from SNP 81861 to 82461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,530 DEBUG Processing 361/757 atomic regions from SNP 108214 to 108814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,663 DEBUG Processing 250/743 atomic regions from SNP 74743 to 75343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,670 DEBUG Processing 446/866 atomic regions from SNP 133616 to 134216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,709 DEBUG Processing 274/714 atomic regions from SNP 82161 to 82761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,789 DEBUG Processing 362/757 atomic regions from SNP 108514 to 109114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,925 DEBUG Processing 251/743 atomic regions from SNP 75043 to 75643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,949 DEBUG Processing 447/866 atomic regions from SNP 133916 to 134516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,958 DEBUG Processing 275/714 atomic regions from SNP 82461 to 83061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,061 DEBUG Processing 363/757 atomic regions from SNP 108814 to 109414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,180 DEBUG Processing 252/743 atomic regions from SNP 75343 to 75943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,209 DEBUG Processing 276/714 atomic regions from SNP 82761 to 83361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,217 DEBUG Processing 448/866 atomic regions from SNP 134216 to 134816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,318 DEBUG Processing 364/757 atomic regions from SNP 109114 to 109714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,432 DEBUG Processing 253/743 atomic regions from SNP 75643 to 76243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,466 DEBUG Processing 277/714 atomic regions from SNP 83061 to 83661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,491 DEBUG Processing 449/866 atomic regions from SNP 134516 to 135116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,579 DEBUG Processing 365/757 atomic regions from SNP 109414 to 110014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,686 DEBUG Processing 254/743 atomic regions from SNP 75943 to 76543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,718 DEBUG Processing 278/714 atomic regions from SNP 83361 to 83961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,757 DEBUG Processing 450/866 atomic regions from SNP 134816 to 135416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,829 DEBUG Processing 366/757 atomic regions from SNP 109714 to 110314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,939 DEBUG Processing 255/743 atomic regions from SNP 76243 to 76843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,976 DEBUG Processing 279/714 atomic regions from SNP 83661 to 84261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,021 DEBUG Processing 451/866 atomic regions from SNP 135116 to 135716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,078 DEBUG Processing 367/757 atomic regions from SNP 110014 to 110614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,191 DEBUG Processing 256/743 atomic regions from SNP 76543 to 77143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,251 DEBUG Processing 280/714 atomic regions from SNP 83961 to 84561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,289 DEBUG Processing 452/866 atomic regions from SNP 135416 to 136016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,337 DEBUG Processing 368/757 atomic regions from SNP 110314 to 110914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,450 DEBUG Processing 257/743 atomic regions from SNP 76843 to 77443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,525 DEBUG Processing 281/714 atomic regions from SNP 84261 to 84861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,567 DEBUG Processing 453/866 atomic regions from SNP 135716 to 136316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,599 DEBUG Processing 369/757 atomic regions from SNP 110614 to 111214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,699 DEBUG Processing 258/743 atomic regions from SNP 77143 to 77743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,776 DEBUG Processing 282/714 atomic regions from SNP 84561 to 85161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,833 DEBUG Processing 454/866 atomic regions from SNP 136016 to 136616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,855 DEBUG Processing 370/757 atomic regions from SNP 110914 to 111514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,945 DEBUG Processing 259/743 atomic regions from SNP 77443 to 78043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,023 DEBUG Processing 283/714 atomic regions from SNP 84861 to 85461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,107 DEBUG Processing 371/757 atomic regions from SNP 111214 to 111814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,112 DEBUG Processing 455/866 atomic regions from SNP 136316 to 136916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,191 DEBUG Processing 260/743 atomic regions from SNP 77743 to 78343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,271 DEBUG Processing 284/714 atomic regions from SNP 85161 to 85761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,365 DEBUG Processing 372/757 atomic regions from SNP 111514 to 112114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,384 DEBUG Processing 456/866 atomic regions from SNP 136616 to 137216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,440 DEBUG Processing 261/743 atomic regions from SNP 78043 to 78643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,515 DEBUG Processing 285/714 atomic regions from SNP 85461 to 86061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,622 DEBUG Processing 373/757 atomic regions from SNP 111814 to 112414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,653 DEBUG Processing 457/866 atomic regions from SNP 136916 to 137516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,695 DEBUG Processing 262/743 atomic regions from SNP 78343 to 78943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,763 DEBUG Processing 286/714 atomic regions from SNP 85761 to 86361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,880 DEBUG Processing 374/757 atomic regions from SNP 112114 to 112714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,938 DEBUG Processing 458/866 atomic regions from SNP 137216 to 137816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,946 DEBUG Processing 263/743 atomic regions from SNP 78643 to 79243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,010 DEBUG Processing 287/714 atomic regions from SNP 86061 to 86661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,132 DEBUG Processing 375/757 atomic regions from SNP 112414 to 113014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,197 DEBUG Processing 264/743 atomic regions from SNP 78943 to 79543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,207 DEBUG Processing 459/866 atomic regions from SNP 137516 to 138116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,261 DEBUG Processing 288/714 atomic regions from SNP 86361 to 86961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,379 DEBUG Processing 376/757 atomic regions from SNP 112714 to 113314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,451 DEBUG Processing 265/743 atomic regions from SNP 79243 to 79843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,486 DEBUG Processing 460/866 atomic regions from SNP 137816 to 138416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,514 DEBUG Processing 289/714 atomic regions from SNP 86661 to 87261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,630 DEBUG Processing 377/757 atomic regions from SNP 113014 to 113614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,709 DEBUG Processing 266/743 atomic regions from SNP 79543 to 80143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,762 DEBUG Processing 461/866 atomic regions from SNP 138116 to 138716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,781 DEBUG Processing 290/714 atomic regions from SNP 86961 to 87561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,873 DEBUG Processing 378/757 atomic regions from SNP 113314 to 113914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,962 DEBUG Processing 267/743 atomic regions from SNP 79843 to 80443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,034 DEBUG Processing 462/866 atomic regions from SNP 138416 to 139016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,043 DEBUG Processing 291/714 atomic regions from SNP 87261 to 87861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,119 DEBUG Processing 379/757 atomic regions from SNP 113614 to 114214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,208 DEBUG Processing 268/743 atomic regions from SNP 80143 to 80743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,307 DEBUG Processing 292/714 atomic regions from SNP 87561 to 88161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,308 DEBUG Processing 463/866 atomic regions from SNP 138716 to 139316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,369 DEBUG Processing 380/757 atomic regions from SNP 113914 to 114514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,452 DEBUG Processing 269/743 atomic regions from SNP 80443 to 81043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,580 DEBUG Processing 293/714 atomic regions from SNP 87861 to 88461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,582 DEBUG Processing 464/866 atomic regions from SNP 139016 to 139616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,623 DEBUG Processing 381/757 atomic regions from SNP 114214 to 114814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,691 DEBUG Processing 270/743 atomic regions from SNP 80743 to 81343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,855 DEBUG Processing 294/714 atomic regions from SNP 88161 to 88761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,855 DEBUG Processing 465/866 atomic regions from SNP 139316 to 139916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,884 DEBUG Processing 382/757 atomic regions from SNP 114514 to 115114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,938 DEBUG Processing 271/743 atomic regions from SNP 81043 to 81643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,119 DEBUG Processing 295/714 atomic regions from SNP 88461 to 89061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,138 DEBUG Processing 466/866 atomic regions from SNP 139616 to 140216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,147 DEBUG Processing 383/757 atomic regions from SNP 114814 to 115414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,188 DEBUG Processing 272/743 atomic regions from SNP 81343 to 81943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,372 DEBUG Processing 296/714 atomic regions from SNP 88761 to 89361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,408 DEBUG Processing 384/757 atomic regions from SNP 115114 to 115714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,421 DEBUG Processing 467/866 atomic regions from SNP 139916 to 140516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,438 DEBUG Processing 273/743 atomic regions from SNP 81643 to 82243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,623 DEBUG Processing 297/714 atomic regions from SNP 89061 to 89661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,667 DEBUG Processing 385/757 atomic regions from SNP 115414 to 116014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,691 DEBUG Processing 274/743 atomic regions from SNP 81943 to 82543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,708 DEBUG Processing 468/866 atomic regions from SNP 140216 to 140816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,875 DEBUG Processing 298/714 atomic regions from SNP 89361 to 89961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,927 DEBUG Processing 386/757 atomic regions from SNP 115714 to 116314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,948 DEBUG Processing 275/743 atomic regions from SNP 82243 to 82843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,010 DEBUG Processing 469/866 atomic regions from SNP 140516 to 141116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,120 DEBUG Processing 299/714 atomic regions from SNP 89661 to 90261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,182 DEBUG Processing 387/757 atomic regions from SNP 116014 to 116614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,200 DEBUG Processing 276/743 atomic regions from SNP 82543 to 83143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,312 DEBUG Processing 470/866 atomic regions from SNP 140816 to 141416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,370 DEBUG Processing 300/714 atomic regions from SNP 89961 to 90561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,435 DEBUG Processing 388/757 atomic regions from SNP 116314 to 116914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,447 DEBUG Processing 277/743 atomic regions from SNP 82843 to 83443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,604 DEBUG Processing 471/866 atomic regions from SNP 141116 to 141716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,622 DEBUG Processing 301/714 atomic regions from SNP 90261 to 90861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,693 DEBUG Processing 389/757 atomic regions from SNP 116614 to 117214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,698 DEBUG Processing 278/743 atomic regions from SNP 83143 to 83743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,876 DEBUG Processing 302/714 atomic regions from SNP 90561 to 91161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,902 DEBUG Processing 472/866 atomic regions from SNP 141416 to 142016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,949 DEBUG Processing 390/757 atomic regions from SNP 116914 to 117514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,950 DEBUG Processing 279/743 atomic regions from SNP 83443 to 84043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,128 DEBUG Processing 303/714 atomic regions from SNP 90861 to 91461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,195 DEBUG Processing 473/866 atomic regions from SNP 141716 to 142316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,206 DEBUG Processing 280/743 atomic regions from SNP 83743 to 84343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,207 DEBUG Processing 391/757 atomic regions from SNP 117214 to 117814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,382 DEBUG Processing 304/714 atomic regions from SNP 91161 to 91761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,462 DEBUG Processing 281/743 atomic regions from SNP 84043 to 84643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,467 DEBUG Processing 392/757 atomic regions from SNP 117514 to 118114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,484 DEBUG Processing 474/866 atomic regions from SNP 142016 to 142616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,634 DEBUG Processing 305/714 atomic regions from SNP 91461 to 92061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,722 DEBUG Processing 282/743 atomic regions from SNP 84343 to 84943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,729 DEBUG Processing 393/757 atomic regions from SNP 117814 to 118414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,756 DEBUG Processing 475/866 atomic regions from SNP 142316 to 142916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,882 DEBUG Processing 306/714 atomic regions from SNP 91761 to 92361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,978 DEBUG Processing 283/743 atomic regions from SNP 84643 to 85243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,000 DEBUG Processing 394/757 atomic regions from SNP 118114 to 118714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,030 DEBUG Processing 476/866 atomic regions from SNP 142616 to 143216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,127 DEBUG Processing 307/714 atomic regions from SNP 92061 to 92661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,235 DEBUG Processing 284/743 atomic regions from SNP 84943 to 85543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,262 DEBUG Processing 395/757 atomic regions from SNP 118414 to 119014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,301 DEBUG Processing 477/866 atomic regions from SNP 142916 to 143516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,377 DEBUG Processing 308/714 atomic regions from SNP 92361 to 92961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,490 DEBUG Processing 285/743 atomic regions from SNP 85243 to 85843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,538 DEBUG Processing 396/757 atomic regions from SNP 118714 to 119314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,575 DEBUG Processing 478/866 atomic regions from SNP 143216 to 143816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,629 DEBUG Processing 309/714 atomic regions from SNP 92661 to 93261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,742 DEBUG Processing 286/743 atomic regions from SNP 85543 to 86143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,807 DEBUG Processing 397/757 atomic regions from SNP 119014 to 119614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,851 DEBUG Processing 479/866 atomic regions from SNP 143516 to 144116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,888 DEBUG Processing 310/714 atomic regions from SNP 92961 to 93561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,988 DEBUG Processing 287/743 atomic regions from SNP 85843 to 86443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,070 DEBUG Processing 398/757 atomic regions from SNP 119314 to 119914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,129 DEBUG Processing 480/866 atomic regions from SNP 143816 to 144416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,147 DEBUG Processing 311/714 atomic regions from SNP 93261 to 93861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,237 DEBUG Processing 288/743 atomic regions from SNP 86143 to 86743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,330 DEBUG Processing 399/757 atomic regions from SNP 119614 to 120214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,403 DEBUG Processing 481/866 atomic regions from SNP 144116 to 144716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,414 DEBUG Processing 312/714 atomic regions from SNP 93561 to 94161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,491 DEBUG Processing 289/743 atomic regions from SNP 86443 to 87043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,592 DEBUG Processing 400/757 atomic regions from SNP 119914 to 120514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,675 DEBUG Processing 482/866 atomic regions from SNP 144416 to 145016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,683 DEBUG Processing 313/714 atomic regions from SNP 93861 to 94461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,743 DEBUG Processing 290/743 atomic regions from SNP 86743 to 87343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,854 DEBUG Processing 401/757 atomic regions from SNP 120214 to 120814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,964 DEBUG Processing 314/714 atomic regions from SNP 94161 to 94761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,973 DEBUG Processing 483/866 atomic regions from SNP 144716 to 145316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,998 DEBUG Processing 291/743 atomic regions from SNP 87043 to 87643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,109 DEBUG Processing 402/757 atomic regions from SNP 120514 to 121114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,236 DEBUG Processing 315/714 atomic regions from SNP 94461 to 95061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,249 DEBUG Processing 292/743 atomic regions from SNP 87343 to 87943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,260 DEBUG Processing 484/866 atomic regions from SNP 145016 to 145616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,373 DEBUG Processing 403/757 atomic regions from SNP 120814 to 121414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,500 DEBUG Processing 293/743 atomic regions from SNP 87643 to 88243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,506 DEBUG Processing 316/714 atomic regions from SNP 94761 to 95361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,542 DEBUG Processing 485/866 atomic regions from SNP 145316 to 145916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,627 DEBUG Processing 404/757 atomic regions from SNP 121114 to 121714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,749 DEBUG Processing 294/743 atomic regions from SNP 87943 to 88543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,775 DEBUG Processing 317/714 atomic regions from SNP 95061 to 95661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,821 DEBUG Processing 486/866 atomic regions from SNP 145616 to 146216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,880 DEBUG Processing 405/757 atomic regions from SNP 121414 to 122014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,991 DEBUG Processing 295/743 atomic regions from SNP 88243 to 88843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,046 DEBUG Processing 318/714 atomic regions from SNP 95361 to 95961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,114 DEBUG Processing 487/866 atomic regions from SNP 145916 to 146516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,131 DEBUG Processing 406/757 atomic regions from SNP 121714 to 122314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,233 DEBUG Processing 296/743 atomic regions from SNP 88543 to 89143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,321 DEBUG Processing 319/714 atomic regions from SNP 95661 to 96261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,384 DEBUG Processing 407/757 atomic regions from SNP 122014 to 122614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,399 DEBUG Processing 488/866 atomic regions from SNP 146216 to 146816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,478 DEBUG Processing 297/743 atomic regions from SNP 88843 to 89443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,610 DEBUG Processing 320/714 atomic regions from SNP 95961 to 96561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,642 DEBUG Processing 408/757 atomic regions from SNP 122314 to 122914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,692 DEBUG Processing 489/866 atomic regions from SNP 146516 to 147116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,740 DEBUG Processing 298/743 atomic regions from SNP 89143 to 89743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,903 DEBUG Processing 409/757 atomic regions from SNP 122614 to 123214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,904 DEBUG Processing 321/714 atomic regions from SNP 96261 to 96861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,989 DEBUG Processing 299/743 atomic regions from SNP 89443 to 90043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,990 DEBUG Processing 490/866 atomic regions from SNP 146816 to 147416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,155 DEBUG Processing 410/757 atomic regions from SNP 122914 to 123514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,180 DEBUG Processing 322/714 atomic regions from SNP 96561 to 97161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,240 DEBUG Processing 300/743 atomic regions from SNP 89743 to 90343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,282 DEBUG Processing 491/866 atomic regions from SNP 147116 to 147716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,416 DEBUG Processing 411/757 atomic regions from SNP 123214 to 123814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,446 DEBUG Processing 323/714 atomic regions from SNP 96861 to 97461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,509 DEBUG Processing 301/743 atomic regions from SNP 90043 to 90643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,581 DEBUG Processing 492/866 atomic regions from SNP 147416 to 148016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,683 DEBUG Processing 412/757 atomic regions from SNP 123514 to 124114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,718 DEBUG Processing 324/714 atomic regions from SNP 97161 to 97761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,758 DEBUG Processing 302/743 atomic regions from SNP 90343 to 90943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,773 DEBUG Segmenting atomic regions: 2025-01-31 09:51:13,861 DEBUG Processing 493/866 atomic regions from SNP 147716 to 148316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,865 DEBUG Processing 1/674 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,936 DEBUG Processing 413/757 atomic regions from SNP 123814 to 124414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,977 DEBUG Processing 325/714 atomic regions from SNP 97461 to 98061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,999 DEBUG Processing 303/743 atomic regions from SNP 90643 to 91243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,102 DEBUG Processing 2/674 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,150 DEBUG Processing 494/866 atomic regions from SNP 148016 to 148616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,189 DEBUG Processing 414/757 atomic regions from SNP 124114 to 124714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,242 DEBUG Processing 304/743 atomic regions from SNP 90943 to 91543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,243 DEBUG Processing 326/714 atomic regions from SNP 97761 to 98361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,337 DEBUG Processing 3/674 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,443 DEBUG Processing 495/866 atomic regions from SNP 148316 to 148916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,446 DEBUG Processing 415/757 atomic regions from SNP 124414 to 125014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,489 DEBUG Processing 305/743 atomic regions from SNP 91243 to 91843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,501 DEBUG Processing 327/714 atomic regions from SNP 98061 to 98661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,579 DEBUG Processing 4/674 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,703 DEBUG Processing 416/757 atomic regions from SNP 124714 to 125314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,732 DEBUG Processing 496/866 atomic regions from SNP 148616 to 149216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,741 DEBUG Processing 306/743 atomic regions from SNP 91543 to 92143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,755 DEBUG Processing 328/714 atomic regions from SNP 98361 to 98961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,824 DEBUG Processing 5/674 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,959 DEBUG Processing 417/757 atomic regions from SNP 125014 to 125614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,989 DEBUG Processing 307/743 atomic regions from SNP 91843 to 92443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,010 DEBUG Processing 329/714 atomic regions from SNP 98661 to 99261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,015 DEBUG Processing 497/866 atomic regions from SNP 148916 to 149516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,065 DEBUG Processing 6/674 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,212 DEBUG Processing 418/757 atomic regions from SNP 125314 to 125914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,244 DEBUG Processing 308/743 atomic regions from SNP 92143 to 92743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,261 DEBUG Processing 330/714 atomic regions from SNP 98961 to 99561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,300 DEBUG Processing 7/674 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,303 DEBUG Processing 498/866 atomic regions from SNP 149216 to 149816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,463 DEBUG Processing 419/757 atomic regions from SNP 125614 to 126214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,493 DEBUG Processing 309/743 atomic regions from SNP 92443 to 93043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,510 DEBUG Processing 331/714 atomic regions from SNP 99261 to 99861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,538 DEBUG Processing 8/674 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,596 DEBUG Processing 499/866 atomic regions from SNP 149516 to 150116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,708 DEBUG Processing 420/757 atomic regions from SNP 125914 to 126514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,738 DEBUG Processing 310/743 atomic regions from SNP 92743 to 93343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,758 DEBUG Processing 332/714 atomic regions from SNP 99561 to 100161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,772 DEBUG Processing 9/674 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,885 DEBUG Processing 500/866 atomic regions from SNP 149816 to 150416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,961 DEBUG Processing 421/757 atomic regions from SNP 126214 to 126814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,986 DEBUG Processing 311/743 atomic regions from SNP 93043 to 93643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,006 DEBUG Processing 10/674 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,009 DEBUG Processing 333/714 atomic regions from SNP 99861 to 100461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,175 DEBUG Processing 501/866 atomic regions from SNP 150116 to 150716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,215 DEBUG Processing 422/757 atomic regions from SNP 126514 to 127114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,238 DEBUG Processing 312/743 atomic regions from SNP 93343 to 93943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,242 DEBUG Processing 11/674 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,258 DEBUG Processing 334/714 atomic regions from SNP 100161 to 100761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,460 DEBUG Processing 502/866 atomic regions from SNP 150416 to 151016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,474 DEBUG Processing 423/757 atomic regions from SNP 126814 to 127414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,485 DEBUG Processing 12/674 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,497 DEBUG Processing 313/743 atomic regions from SNP 93643 to 94243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,516 DEBUG Processing 335/714 atomic regions from SNP 100461 to 101061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,732 DEBUG Processing 13/674 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,739 DEBUG Processing 424/757 atomic regions from SNP 127114 to 127714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,754 DEBUG Processing 503/866 atomic regions from SNP 150716 to 151316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,761 DEBUG Processing 314/743 atomic regions from SNP 93943 to 94543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,771 DEBUG Processing 336/714 atomic regions from SNP 100761 to 101361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,969 DEBUG Processing 14/674 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,000 DEBUG Processing 425/757 atomic regions from SNP 127414 to 128014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,017 DEBUG Processing 315/743 atomic regions from SNP 94243 to 94843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,026 DEBUG Processing 337/714 atomic regions from SNP 101061 to 101661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,052 DEBUG Processing 504/866 atomic regions from SNP 151016 to 151616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,219 DEBUG Processing 15/674 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,281 DEBUG Processing 316/743 atomic regions from SNP 94543 to 95143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,282 DEBUG Processing 426/757 atomic regions from SNP 127714 to 128314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,287 DEBUG Processing 338/714 atomic regions from SNP 101361 to 101961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,374 DEBUG Processing 505/866 atomic regions from SNP 151316 to 151916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,446 DEBUG Processing 16/674 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,531 DEBUG Processing 317/743 atomic regions from SNP 94843 to 95443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,535 DEBUG Processing 339/714 atomic regions from SNP 101661 to 102261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,545 DEBUG Processing 427/757 atomic regions from SNP 128014 to 128614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,661 DEBUG Processing 506/866 atomic regions from SNP 151616 to 152216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,688 DEBUG Processing 17/674 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,777 DEBUG Processing 318/743 atomic regions from SNP 95143 to 95743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,779 DEBUG Processing 340/714 atomic regions from SNP 101961 to 102561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,832 DEBUG Processing 428/757 atomic regions from SNP 128314 to 128914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,916 DEBUG Processing 18/674 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,937 DEBUG Processing 507/866 atomic regions from SNP 151916 to 152516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,023 DEBUG Processing 341/714 atomic regions from SNP 102261 to 102861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,027 DEBUG Processing 319/743 atomic regions from SNP 95443 to 96043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,105 DEBUG Processing 429/757 atomic regions from SNP 128614 to 129214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,142 DEBUG Processing 19/674 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,221 DEBUG Processing 508/866 atomic regions from SNP 152216 to 152816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,270 DEBUG Processing 342/714 atomic regions from SNP 102561 to 103161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,271 DEBUG Processing 320/743 atomic regions from SNP 95743 to 96343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,372 DEBUG Processing 20/674 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,383 DEBUG Processing 430/757 atomic regions from SNP 128914 to 129514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,514 DEBUG Processing 509/866 atomic regions from SNP 152516 to 153116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,519 DEBUG Processing 343/714 atomic regions from SNP 102861 to 103461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,524 DEBUG Processing 321/743 atomic regions from SNP 96043 to 96643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,608 DEBUG Processing 21/674 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,664 DEBUG Processing 431/757 atomic regions from SNP 129214 to 129814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,764 DEBUG Processing 344/714 atomic regions from SNP 103161 to 103761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,768 DEBUG Processing 322/743 atomic regions from SNP 96343 to 96943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,797 DEBUG Processing 510/866 atomic regions from SNP 152816 to 153416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,841 DEBUG Processing 22/674 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,923 DEBUG Processing 432/757 atomic regions from SNP 129514 to 130114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,009 DEBUG Processing 345/714 atomic regions from SNP 103461 to 104061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,014 DEBUG Processing 323/743 atomic regions from SNP 96643 to 97243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,069 DEBUG Processing 511/866 atomic regions from SNP 153116 to 153716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,077 DEBUG Processing 23/674 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,184 DEBUG Processing 433/757 atomic regions from SNP 129814 to 130414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,254 DEBUG Processing 346/714 atomic regions from SNP 103761 to 104361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,261 DEBUG Processing 324/743 atomic regions from SNP 96943 to 97543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,310 DEBUG Processing 24/674 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,332 DEBUG Processing 512/866 atomic regions from SNP 153416 to 154016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,452 DEBUG Processing 434/757 atomic regions from SNP 130114 to 130714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,509 DEBUG Processing 325/743 atomic regions from SNP 97243 to 97843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,511 DEBUG Processing 347/714 atomic regions from SNP 104061 to 104661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,546 DEBUG Processing 25/674 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,595 DEBUG Processing 513/866 atomic regions from SNP 153716 to 154316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,740 DEBUG Processing 435/757 atomic regions from SNP 130414 to 131014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,757 DEBUG Processing 326/743 atomic regions from SNP 97543 to 98143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,769 DEBUG Processing 348/714 atomic regions from SNP 104361 to 104961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,783 DEBUG Processing 26/674 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,873 DEBUG Processing 514/866 atomic regions from SNP 154016 to 154616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,013 DEBUG Processing 327/743 atomic regions from SNP 97843 to 98443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,020 DEBUG Processing 436/757 atomic regions from SNP 130714 to 131314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,028 DEBUG Processing 27/674 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,030 DEBUG Processing 349/714 atomic regions from SNP 104661 to 105261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,168 DEBUG Processing 515/866 atomic regions from SNP 154316 to 154916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,266 DEBUG Processing 328/743 atomic regions from SNP 98143 to 98743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,271 DEBUG Processing 28/674 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,289 DEBUG Processing 350/714 atomic regions from SNP 104961 to 105561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,293 DEBUG Processing 437/757 atomic regions from SNP 131014 to 131614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,455 DEBUG Processing 516/866 atomic regions from SNP 154616 to 155216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,501 DEBUG Processing 29/674 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,508 DEBUG Processing 329/743 atomic regions from SNP 98443 to 99043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,538 DEBUG Processing 351/714 atomic regions from SNP 105261 to 105861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,571 DEBUG Processing 438/757 atomic regions from SNP 131314 to 131914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,727 DEBUG Processing 30/674 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,736 DEBUG Processing 517/866 atomic regions from SNP 154916 to 155516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,748 DEBUG Processing 330/743 atomic regions from SNP 98743 to 99343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,781 DEBUG Processing 352/714 atomic regions from SNP 105561 to 106161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,846 DEBUG Processing 439/757 atomic regions from SNP 131614 to 132214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,960 DEBUG Processing 31/674 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,991 DEBUG Processing 331/743 atomic regions from SNP 99043 to 99643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,020 DEBUG Processing 518/866 atomic regions from SNP 155216 to 155816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,027 DEBUG Processing 353/714 atomic regions from SNP 105861 to 106461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,116 DEBUG Processing 440/757 atomic regions from SNP 131914 to 132514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,195 DEBUG Processing 32/674 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,238 DEBUG Processing 332/743 atomic regions from SNP 99343 to 99943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,272 DEBUG Processing 354/714 atomic regions from SNP 106161 to 106761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,311 DEBUG Processing 519/866 atomic regions from SNP 155516 to 156116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,397 DEBUG Processing 441/757 atomic regions from SNP 132214 to 132814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,437 DEBUG Processing 33/674 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,491 DEBUG Processing 333/743 atomic regions from SNP 99643 to 100243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,519 DEBUG Processing 355/714 atomic regions from SNP 106461 to 107061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,618 DEBUG Processing 520/866 atomic regions from SNP 155816 to 156416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,674 DEBUG Processing 442/757 atomic regions from SNP 132514 to 133114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,682 DEBUG Processing 34/674 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,754 DEBUG Processing 334/743 atomic regions from SNP 99943 to 100543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,780 DEBUG Processing 356/714 atomic regions from SNP 106761 to 107361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,907 DEBUG Processing 521/866 atomic regions from SNP 156116 to 156716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,923 DEBUG Processing 35/674 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,955 DEBUG Processing 443/757 atomic regions from SNP 132814 to 133414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,013 DEBUG Processing 335/743 atomic regions from SNP 100243 to 100843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,043 DEBUG Processing 357/714 atomic regions from SNP 107061 to 107661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,148 DEBUG Processing 36/674 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,182 DEBUG Processing 522/866 atomic regions from SNP 156416 to 157016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,232 DEBUG Processing 444/757 atomic regions from SNP 133114 to 133714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,270 DEBUG Processing 336/743 atomic regions from SNP 100543 to 101143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,301 DEBUG Processing 358/714 atomic regions from SNP 107361 to 107961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,368 DEBUG Processing 37/674 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,460 DEBUG Processing 523/866 atomic regions from SNP 156716 to 157316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,511 DEBUG Processing 445/757 atomic regions from SNP 133414 to 134014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,521 DEBUG Processing 337/743 atomic regions from SNP 100843 to 101443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,557 DEBUG Processing 359/714 atomic regions from SNP 107661 to 108261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,596 DEBUG Processing 38/674 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,737 DEBUG Processing 524/866 atomic regions from SNP 157016 to 157616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,775 DEBUG Processing 338/743 atomic regions from SNP 101143 to 101743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,794 DEBUG Processing 446/757 atomic regions from SNP 133714 to 134314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,813 DEBUG Processing 360/714 atomic regions from SNP 107961 to 108561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,832 DEBUG Processing 39/674 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,018 DEBUG Processing 525/866 atomic regions from SNP 157316 to 157916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,029 DEBUG Processing 339/743 atomic regions from SNP 101443 to 102043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,071 DEBUG Processing 361/714 atomic regions from SNP 108261 to 108861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,073 DEBUG Processing 40/674 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,078 DEBUG Processing 447/757 atomic regions from SNP 134014 to 134614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,274 DEBUG Processing 340/743 atomic regions from SNP 101743 to 102343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,280 DEBUG Processing 526/866 atomic regions from SNP 157616 to 158216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,307 DEBUG Processing 41/674 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,321 DEBUG Processing 362/714 atomic regions from SNP 108561 to 109161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,346 DEBUG Processing 448/757 atomic regions from SNP 134314 to 134914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,513 DEBUG Processing 341/743 atomic regions from SNP 102043 to 102643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,537 DEBUG Processing 42/674 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,539 DEBUG Processing 527/866 atomic regions from SNP 157916 to 158516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,569 DEBUG Processing 363/714 atomic regions from SNP 108861 to 109461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,594 DEBUG Processing 449/757 atomic regions from SNP 134614 to 135214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,755 DEBUG Processing 342/743 atomic regions from SNP 102343 to 102943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,767 DEBUG Processing 43/674 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,800 DEBUG Processing 528/866 atomic regions from SNP 158216 to 158816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,815 DEBUG Processing 364/714 atomic regions from SNP 109161 to 109761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,842 DEBUG Processing 450/757 atomic regions from SNP 134914 to 135514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,997 DEBUG Processing 44/674 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,999 DEBUG Processing 343/743 atomic regions from SNP 102643 to 103243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,059 DEBUG Processing 529/866 atomic regions from SNP 158516 to 159116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,062 DEBUG Processing 365/714 atomic regions from SNP 109461 to 110061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,090 DEBUG Processing 451/757 atomic regions from SNP 135214 to 135814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,227 DEBUG Processing 45/674 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,242 DEBUG Processing 344/743 atomic regions from SNP 102943 to 103543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,308 DEBUG Processing 366/714 atomic regions from SNP 109761 to 110361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,322 DEBUG Processing 530/866 atomic regions from SNP 158816 to 159416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,337 DEBUG Processing 452/757 atomic regions from SNP 135514 to 136114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,453 DEBUG Processing 46/674 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,485 DEBUG Processing 345/743 atomic regions from SNP 103243 to 103843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,552 DEBUG Processing 367/714 atomic regions from SNP 110061 to 110661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,585 DEBUG Processing 531/866 atomic regions from SNP 159116 to 159716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,611 DEBUG Processing 453/757 atomic regions from SNP 135814 to 136414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,684 DEBUG Processing 47/674 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,727 DEBUG Processing 346/743 atomic regions from SNP 103543 to 104143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,797 DEBUG Processing 368/714 atomic regions from SNP 110361 to 110961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,845 DEBUG Processing 532/866 atomic regions from SNP 159416 to 160016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,894 DEBUG Processing 454/757 atomic regions from SNP 136114 to 136714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,921 DEBUG Processing 48/674 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,979 DEBUG Processing 347/743 atomic regions from SNP 103843 to 104443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,044 DEBUG Processing 369/714 atomic regions from SNP 110661 to 111261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,108 DEBUG Processing 533/866 atomic regions from SNP 159716 to 160316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,150 DEBUG Processing 49/674 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,180 DEBUG Processing 455/757 atomic regions from SNP 136414 to 137014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,240 DEBUG Processing 348/743 atomic regions from SNP 104143 to 104743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,286 DEBUG Processing 370/714 atomic regions from SNP 110961 to 111561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,363 DEBUG Processing 534/866 atomic regions from SNP 160016 to 160616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,378 DEBUG Processing 50/674 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,467 DEBUG Processing 456/757 atomic regions from SNP 136714 to 137314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,484 DEBUG Processing 349/743 atomic regions from SNP 104443 to 105043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,529 DEBUG Processing 371/714 atomic regions from SNP 111261 to 111861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,605 DEBUG Processing 51/674 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,618 DEBUG Processing 535/866 atomic regions from SNP 160316 to 160916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,730 DEBUG Processing 350/743 atomic regions from SNP 104743 to 105343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,759 DEBUG Processing 457/757 atomic regions from SNP 137014 to 137614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,773 DEBUG Processing 372/714 atomic regions from SNP 111561 to 112161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,825 DEBUG Processing 52/674 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,868 DEBUG Processing 536/866 atomic regions from SNP 160616 to 161216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,973 DEBUG Processing 351/743 atomic regions from SNP 105043 to 105643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,015 DEBUG Processing 373/714 atomic regions from SNP 111861 to 112461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,046 DEBUG Processing 458/757 atomic regions from SNP 137314 to 137914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,051 DEBUG Processing 53/674 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,117 DEBUG Processing 537/866 atomic regions from SNP 160916 to 161516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,215 DEBUG Processing 352/743 atomic regions from SNP 105343 to 105943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,265 DEBUG Processing 374/714 atomic regions from SNP 112161 to 112761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,285 DEBUG Processing 54/674 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,337 DEBUG Processing 459/757 atomic regions from SNP 137614 to 138214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,374 DEBUG Processing 538/866 atomic regions from SNP 161216 to 161816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,467 DEBUG Processing 353/743 atomic regions from SNP 105643 to 106243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,527 DEBUG Processing 375/714 atomic regions from SNP 112461 to 113061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,529 DEBUG Processing 55/674 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,633 DEBUG Processing 460/757 atomic regions from SNP 137914 to 138514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,637 DEBUG Processing 539/866 atomic regions from SNP 161516 to 162116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,706 DEBUG Processing 354/743 atomic regions from SNP 105943 to 106543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,762 DEBUG Processing 56/674 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,775 DEBUG Processing 376/714 atomic regions from SNP 112761 to 113361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,900 DEBUG Processing 540/866 atomic regions from SNP 161816 to 162416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,920 DEBUG Processing 461/757 atomic regions from SNP 138214 to 138814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,946 DEBUG Processing 355/743 atomic regions from SNP 106243 to 106843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,991 DEBUG Processing 57/674 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,037 DEBUG Processing 377/714 atomic regions from SNP 113061 to 113661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,179 DEBUG Processing 541/866 atomic regions from SNP 162116 to 162716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,192 DEBUG Processing 356/743 atomic regions from SNP 106543 to 107143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,209 DEBUG Processing 462/757 atomic regions from SNP 138514 to 139114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,222 DEBUG Processing 58/674 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,283 DEBUG Processing 378/714 atomic regions from SNP 113361 to 113961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,446 DEBUG Processing 357/743 atomic regions from SNP 106843 to 107443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,466 DEBUG Processing 542/866 atomic regions from SNP 162416 to 163016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,466 DEBUG Processing 59/674 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,507 DEBUG Processing 463/757 atomic regions from SNP 138814 to 139414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,545 DEBUG Processing 379/714 atomic regions from SNP 113661 to 114261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,695 DEBUG Processing 358/743 atomic regions from SNP 107143 to 107743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,701 DEBUG Processing 60/674 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,744 DEBUG Processing 543/866 atomic regions from SNP 162716 to 163316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,796 DEBUG Processing 380/714 atomic regions from SNP 113961 to 114561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,802 DEBUG Processing 464/757 atomic regions from SNP 139114 to 139714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,949 DEBUG Processing 61/674 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,958 DEBUG Processing 359/743 atomic regions from SNP 107443 to 108043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,055 DEBUG Processing 544/866 atomic regions from SNP 163016 to 163616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,090 DEBUG Processing 381/714 atomic regions from SNP 114261 to 114861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,116 DEBUG Processing 465/757 atomic regions from SNP 139414 to 140014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,213 DEBUG Processing 62/674 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,224 DEBUG Processing 360/743 atomic regions from SNP 107743 to 108343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,314 DEBUG Processing 545/866 atomic regions from SNP 163316 to 163916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,330 DEBUG Processing 382/714 atomic regions from SNP 114561 to 115161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,389 DEBUG Processing 466/757 atomic regions from SNP 139714 to 140314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,441 DEBUG Processing 63/674 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,465 DEBUG Processing 361/743 atomic regions from SNP 108043 to 108643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,569 DEBUG Processing 383/714 atomic regions from SNP 114861 to 115461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,573 DEBUG Processing 546/866 atomic regions from SNP 163616 to 164216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,639 DEBUG Processing 467/757 atomic regions from SNP 140014 to 140614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,681 DEBUG Processing 64/674 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,716 DEBUG Processing 362/743 atomic regions from SNP 108343 to 108943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,834 DEBUG Processing 384/714 atomic regions from SNP 115161 to 115761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,838 DEBUG Processing 547/866 atomic regions from SNP 163916 to 164516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,890 DEBUG Processing 468/757 atomic regions from SNP 140314 to 140914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,922 DEBUG Processing 65/674 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,968 DEBUG Processing 363/743 atomic regions from SNP 108643 to 109243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,083 DEBUG Processing 385/714 atomic regions from SNP 115461 to 116061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,101 DEBUG Processing 548/866 atomic regions from SNP 164216 to 164816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,139 DEBUG Processing 469/757 atomic regions from SNP 140614 to 141214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,154 DEBUG Processing 66/674 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,214 DEBUG Processing 364/743 atomic regions from SNP 108943 to 109543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,327 DEBUG Processing 386/714 atomic regions from SNP 115761 to 116361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,362 DEBUG Processing 549/866 atomic regions from SNP 164516 to 165116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,386 DEBUG Processing 67/674 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,391 DEBUG Processing 470/757 atomic regions from SNP 140914 to 141514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,460 DEBUG Processing 365/743 atomic regions from SNP 109243 to 109843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,576 DEBUG Processing 387/714 atomic regions from SNP 116061 to 116661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,619 DEBUG Processing 68/674 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,629 DEBUG Processing 550/866 atomic regions from SNP 164816 to 165416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,660 DEBUG Processing 471/757 atomic regions from SNP 141214 to 141814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,707 DEBUG Processing 366/743 atomic regions from SNP 109543 to 110143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,825 DEBUG Processing 388/714 atomic regions from SNP 116361 to 116961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,853 DEBUG Processing 69/674 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,894 DEBUG Processing 551/866 atomic regions from SNP 165116 to 165716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,928 DEBUG Processing 472/757 atomic regions from SNP 141514 to 142114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,955 DEBUG Processing 367/743 atomic regions from SNP 109843 to 110443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,086 DEBUG Processing 389/714 atomic regions from SNP 116661 to 117261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,101 DEBUG Processing 70/674 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,173 DEBUG Processing 552/866 atomic regions from SNP 165416 to 166016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,200 DEBUG Processing 473/757 atomic regions from SNP 141814 to 142414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,212 DEBUG Processing 368/743 atomic regions from SNP 110143 to 110743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,337 DEBUG Processing 71/674 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,338 DEBUG Processing 390/714 atomic regions from SNP 116961 to 117561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,434 DEBUG Processing 553/866 atomic regions from SNP 165716 to 166316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,457 DEBUG Processing 474/757 atomic regions from SNP 142114 to 142714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,460 DEBUG Processing 369/743 atomic regions from SNP 110443 to 111043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,585 DEBUG Processing 72/674 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,589 DEBUG Processing 391/714 atomic regions from SNP 117261 to 117861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,693 DEBUG Processing 554/866 atomic regions from SNP 166016 to 166616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,703 DEBUG Processing 370/743 atomic regions from SNP 110743 to 111343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,710 DEBUG Processing 475/757 atomic regions from SNP 142414 to 143014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,835 DEBUG Processing 73/674 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,837 DEBUG Processing 392/714 atomic regions from SNP 117561 to 118161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,945 DEBUG Processing 371/743 atomic regions from SNP 111043 to 111643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,954 DEBUG Processing 555/866 atomic regions from SNP 166316 to 166916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,965 DEBUG Processing 476/757 atomic regions from SNP 142714 to 143314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,082 DEBUG Processing 393/714 atomic regions from SNP 117861 to 118461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,086 DEBUG Processing 74/674 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,185 DEBUG Processing 372/743 atomic regions from SNP 111343 to 111943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,210 DEBUG Processing 477/757 atomic regions from SNP 143014 to 143614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,215 DEBUG Processing 556/866 atomic regions from SNP 166616 to 167216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,330 DEBUG Processing 394/714 atomic regions from SNP 118161 to 118761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,343 DEBUG Processing 75/674 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,441 DEBUG Processing 373/743 atomic regions from SNP 111643 to 112243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,466 DEBUG Processing 478/757 atomic regions from SNP 143314 to 143914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,479 DEBUG Processing 557/866 atomic regions from SNP 166916 to 167516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,577 DEBUG Processing 395/714 atomic regions from SNP 118461 to 119061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,598 DEBUG Processing 76/674 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,683 DEBUG Processing 374/743 atomic regions from SNP 111943 to 112543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,714 DEBUG Processing 479/757 atomic regions from SNP 143614 to 144214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,742 DEBUG Processing 558/866 atomic regions from SNP 167216 to 167816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,826 DEBUG Processing 396/714 atomic regions from SNP 118761 to 119361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,840 DEBUG Processing 77/674 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,925 DEBUG Processing 375/743 atomic regions from SNP 112243 to 112843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,963 DEBUG Processing 480/757 atomic regions from SNP 143914 to 144514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,001 DEBUG Processing 559/866 atomic regions from SNP 167516 to 168116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,071 DEBUG Processing 397/714 atomic regions from SNP 119061 to 119661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,094 DEBUG Processing 78/674 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,168 DEBUG Processing 376/743 atomic regions from SNP 112543 to 113143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,221 DEBUG Processing 481/757 atomic regions from SNP 144214 to 144814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,263 DEBUG Processing 560/866 atomic regions from SNP 167816 to 168416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,288 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:51:32,321 DEBUG Processing 398/714 atomic regions from SNP 119361 to 119961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,358 DEBUG Processing 79/674 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,417 DEBUG Processing 377/743 atomic regions from SNP 112843 to 113443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,490 DEBUG Processing 482/757 atomic regions from SNP 144514 to 145114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,524 DEBUG Processing 561/866 atomic regions from SNP 168116 to 168716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,565 DEBUG Processing 399/714 atomic regions from SNP 119661 to 120261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,612 DEBUG Processing 80/674 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,667 DEBUG Processing 378/743 atomic regions from SNP 113143 to 113743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,757 DEBUG Processing 483/757 atomic regions from SNP 144814 to 145414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,784 DEBUG Processing 562/866 atomic regions from SNP 168416 to 169016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,814 DEBUG Processing 400/714 atomic regions from SNP 119961 to 120561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,852 DEBUG Processing 81/674 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,916 DEBUG Processing 379/743 atomic regions from SNP 113443 to 114043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,026 DEBUG Processing 484/757 atomic regions from SNP 145114 to 145714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,047 DEBUG Processing 563/866 atomic regions from SNP 168716 to 169316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,063 DEBUG Processing 401/714 atomic regions from SNP 120261 to 120861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,084 DEBUG Processing 82/674 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,162 DEBUG Processing 380/743 atomic regions from SNP 113743 to 114343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,285 DEBUG Processing 485/757 atomic regions from SNP 145414 to 146014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,308 DEBUG Processing 564/866 atomic regions from SNP 169016 to 169616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,311 DEBUG Processing 402/714 atomic regions from SNP 120561 to 121161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,332 DEBUG Processing 83/674 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,403 DEBUG Processing 381/743 atomic regions from SNP 114043 to 114643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,538 DEBUG Processing 486/757 atomic regions from SNP 145714 to 146314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,560 DEBUG Processing 403/714 atomic regions from SNP 120861 to 121461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,572 DEBUG Processing 565/866 atomic regions from SNP 169316 to 169916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,586 DEBUG Processing 84/674 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,644 DEBUG Processing 382/743 atomic regions from SNP 114343 to 114943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,783 DEBUG Processing 487/757 atomic regions from SNP 146014 to 146614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,806 DEBUG Processing 404/714 atomic regions from SNP 121161 to 121761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,834 DEBUG Processing 566/866 atomic regions from SNP 169616 to 170216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,848 DEBUG Processing 85/674 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,906 DEBUG Processing 383/743 atomic regions from SNP 114643 to 115243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,027 DEBUG Processing 488/757 atomic regions from SNP 146314 to 146914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,050 DEBUG Processing 405/714 atomic regions from SNP 121461 to 122061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,095 DEBUG Processing 567/866 atomic regions from SNP 169916 to 170516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,098 DEBUG Processing 86/674 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,167 DEBUG Processing 384/743 atomic regions from SNP 114943 to 115543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,267 DEBUG Processing 489/757 atomic regions from SNP 146614 to 147214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,290 DEBUG Processing 406/714 atomic regions from SNP 121761 to 122361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,347 DEBUG Processing 87/674 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,357 DEBUG Processing 568/866 atomic regions from SNP 170216 to 170816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,439 DEBUG Processing 385/743 atomic regions from SNP 115243 to 115843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,515 DEBUG Processing 490/757 atomic regions from SNP 146914 to 147514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,533 DEBUG Processing 407/714 atomic regions from SNP 122061 to 122661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,578 DEBUG Processing 88/674 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,614 DEBUG Processing 569/866 atomic regions from SNP 170516 to 171116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,711 DEBUG Processing 386/743 atomic regions from SNP 115543 to 116143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,762 DEBUG Processing 491/757 atomic regions from SNP 147214 to 147814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,779 DEBUG Processing 408/714 atomic regions from SNP 122361 to 122961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,801 DEBUG Processing 89/674 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,871 DEBUG Processing 570/866 atomic regions from SNP 170816 to 171416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,991 DEBUG Processing 387/743 atomic regions from SNP 115843 to 116443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,023 DEBUG Processing 492/757 atomic regions from SNP 147514 to 148114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,033 DEBUG Processing 90/674 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,043 DEBUG Processing 409/714 atomic regions from SNP 122661 to 123261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,136 DEBUG Processing 571/866 atomic regions from SNP 171116 to 171716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,262 DEBUG Processing 91/674 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,273 DEBUG Processing 493/757 atomic regions from SNP 147814 to 148414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,276 DEBUG Processing 388/743 atomic regions from SNP 116143 to 116743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,291 DEBUG Processing 410/714 atomic regions from SNP 122961 to 123561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,391 DEBUG Processing 572/866 atomic regions from SNP 171416 to 172016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,488 DEBUG Processing 92/674 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,519 DEBUG Processing 494/757 atomic regions from SNP 148114 to 148714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,530 DEBUG Processing 411/714 atomic regions from SNP 123261 to 123861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,555 DEBUG Processing 389/743 atomic regions from SNP 116443 to 117043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,639 DEBUG Processing 573/866 atomic regions from SNP 171716 to 172316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,707 DEBUG Processing 93/674 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,765 DEBUG Processing 412/714 atomic regions from SNP 123561 to 124161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,767 DEBUG Processing 495/757 atomic regions from SNP 148414 to 149014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,818 DEBUG Processing 390/743 atomic regions from SNP 116743 to 117343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,891 DEBUG Processing 574/866 atomic regions from SNP 172016 to 172616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,937 DEBUG Processing 94/674 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,007 DEBUG Processing 413/714 atomic regions from SNP 123861 to 124461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,015 DEBUG Processing 496/757 atomic regions from SNP 148714 to 149314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,056 DEBUG Processing 391/743 atomic regions from SNP 117043 to 117643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,151 DEBUG Processing 575/866 atomic regions from SNP 172316 to 172916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,180 DEBUG Processing 95/674 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,260 DEBUG Processing 414/714 atomic regions from SNP 124161 to 124761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,272 DEBUG Processing 497/757 atomic regions from SNP 149014 to 149614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,325 DEBUG Processing 392/743 atomic regions from SNP 117343 to 117943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,408 DEBUG Processing 576/866 atomic regions from SNP 172616 to 173216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,409 DEBUG Processing 96/674 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,511 DEBUG Processing 415/714 atomic regions from SNP 124461 to 125061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,526 DEBUG Processing 498/757 atomic regions from SNP 149314 to 149914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,587 DEBUG Processing 393/743 atomic regions from SNP 117643 to 118243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,623 DEBUG Processing 97/674 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,656 DEBUG Processing 577/866 atomic regions from SNP 172916 to 173516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,747 DEBUG Processing 416/714 atomic regions from SNP 124761 to 125361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,769 DEBUG Processing 499/757 atomic regions from SNP 149614 to 150214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,844 DEBUG Processing 98/674 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,847 DEBUG Processing 394/743 atomic regions from SNP 117943 to 118543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,905 DEBUG Processing 578/866 atomic regions from SNP 173216 to 173816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,985 DEBUG Processing 417/714 atomic regions from SNP 125061 to 125661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,012 DEBUG Processing 500/757 atomic regions from SNP 149914 to 150514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,071 DEBUG Processing 99/674 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,093 DEBUG Processing 395/743 atomic regions from SNP 118243 to 118843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,157 DEBUG Processing 579/866 atomic regions from SNP 173516 to 174116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,223 DEBUG Processing 418/714 atomic regions from SNP 125361 to 125961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,257 DEBUG Processing 501/757 atomic regions from SNP 150214 to 150814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,310 DEBUG Processing 100/674 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,348 DEBUG Processing 396/743 atomic regions from SNP 118543 to 119143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,424 DEBUG Processing 580/866 atomic regions from SNP 173816 to 174416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,471 DEBUG Processing 419/714 atomic regions from SNP 125661 to 126261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,515 DEBUG Processing 502/757 atomic regions from SNP 150514 to 151114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,556 DEBUG Processing 101/674 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,617 DEBUG Processing 397/743 atomic regions from SNP 118843 to 119443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,692 DEBUG Processing 581/866 atomic regions from SNP 174116 to 174716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,717 DEBUG Processing 420/714 atomic regions from SNP 125961 to 126561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,769 DEBUG Processing 503/757 atomic regions from SNP 150814 to 151414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,788 DEBUG Processing 102/674 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,878 DEBUG Processing 398/743 atomic regions from SNP 119143 to 119743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,953 DEBUG Processing 582/866 atomic regions from SNP 174416 to 175016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,965 DEBUG Processing 421/714 atomic regions from SNP 126261 to 126861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,024 DEBUG Processing 103/674 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,028 DEBUG Processing 504/757 atomic regions from SNP 151114 to 151714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,146 DEBUG Processing 399/743 atomic regions from SNP 119443 to 120043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,216 DEBUG Processing 422/714 atomic regions from SNP 126561 to 127161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,217 DEBUG Processing 583/866 atomic regions from SNP 174716 to 175316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,255 DEBUG Processing 104/674 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,283 DEBUG Processing 505/757 atomic regions from SNP 151414 to 152014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,404 DEBUG Processing 400/743 atomic regions from SNP 119743 to 120343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,465 DEBUG Processing 423/714 atomic regions from SNP 126861 to 127461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,472 DEBUG Processing 584/866 atomic regions from SNP 175016 to 175616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,482 DEBUG Processing 105/674 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,528 DEBUG Processing 506/757 atomic regions from SNP 151714 to 152314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,640 DEBUG Processing 401/743 atomic regions from SNP 120043 to 120643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,709 DEBUG Processing 424/714 atomic regions from SNP 127161 to 127761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,725 DEBUG Processing 106/674 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,734 DEBUG Processing 585/866 atomic regions from SNP 175316 to 175916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,777 DEBUG Processing 507/757 atomic regions from SNP 152014 to 152614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,873 DEBUG Processing 402/743 atomic regions from SNP 120343 to 120943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,950 DEBUG Processing 425/714 atomic regions from SNP 127461 to 128061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,956 DEBUG Processing 107/674 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,992 DEBUG Processing 586/866 atomic regions from SNP 175616 to 176216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,024 DEBUG Processing 508/757 atomic regions from SNP 152314 to 152914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,107 DEBUG Processing 403/743 atomic regions from SNP 120643 to 121243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,188 DEBUG Processing 426/714 atomic regions from SNP 127761 to 128361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,197 DEBUG Processing 108/674 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,248 DEBUG Processing 587/866 atomic regions from SNP 175916 to 176516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,273 DEBUG Processing 509/757 atomic regions from SNP 152614 to 153214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,343 DEBUG Processing 404/743 atomic regions from SNP 120943 to 121543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,436 DEBUG Processing 109/674 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,436 DEBUG Processing 427/714 atomic regions from SNP 128061 to 128661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,504 DEBUG Processing 588/866 atomic regions from SNP 176216 to 176816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,518 DEBUG Processing 510/757 atomic regions from SNP 152914 to 153514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,579 DEBUG Processing 405/743 atomic regions from SNP 121243 to 121843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,667 DEBUG Processing 110/674 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,685 DEBUG Processing 428/714 atomic regions from SNP 128361 to 128961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,759 DEBUG Processing 589/866 atomic regions from SNP 176516 to 177116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,764 DEBUG Processing 511/757 atomic regions from SNP 153214 to 153814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,820 DEBUG Processing 406/743 atomic regions from SNP 121543 to 122143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,897 DEBUG Processing 111/674 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,936 DEBUG Processing 429/714 atomic regions from SNP 128661 to 129261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,010 DEBUG Processing 512/757 atomic regions from SNP 153514 to 154114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,016 DEBUG Processing 590/866 atomic regions from SNP 176816 to 177416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,060 DEBUG Processing 407/743 atomic regions from SNP 121843 to 122443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,123 DEBUG Processing 112/674 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,185 DEBUG Processing 430/714 atomic regions from SNP 128961 to 129561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,258 DEBUG Processing 513/757 atomic regions from SNP 153814 to 154414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,279 DEBUG Processing 591/866 atomic regions from SNP 177116 to 177716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,309 DEBUG Processing 408/743 atomic regions from SNP 122143 to 122743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,356 DEBUG Processing 113/674 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,441 DEBUG Processing 431/714 atomic regions from SNP 129261 to 129861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,501 DEBUG Processing 514/757 atomic regions from SNP 154114 to 154714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,535 DEBUG Processing 592/866 atomic regions from SNP 177416 to 178016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,551 DEBUG Processing 409/743 atomic regions from SNP 122443 to 123043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,588 DEBUG Processing 114/674 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,701 DEBUG Processing 432/714 atomic regions from SNP 129561 to 130161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,742 DEBUG Processing 515/757 atomic regions from SNP 154414 to 155014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,792 DEBUG Processing 410/743 atomic regions from SNP 122743 to 123343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,792 DEBUG Processing 593/866 atomic regions from SNP 177716 to 178316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,825 DEBUG Processing 115/674 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,948 DEBUG Processing 433/714 atomic regions from SNP 129861 to 130461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,991 DEBUG Processing 516/757 atomic regions from SNP 154714 to 155314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,037 DEBUG Processing 411/743 atomic regions from SNP 123043 to 123643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,051 DEBUG Processing 594/866 atomic regions from SNP 178016 to 178616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,059 DEBUG Processing 116/674 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,204 DEBUG Processing 434/714 atomic regions from SNP 130161 to 130761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,236 DEBUG Processing 517/757 atomic regions from SNP 155014 to 155614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,287 DEBUG Processing 412/743 atomic regions from SNP 123343 to 123943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,289 DEBUG Processing 117/674 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,312 DEBUG Processing 595/866 atomic regions from SNP 178316 to 178916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,467 DEBUG Processing 435/714 atomic regions from SNP 130461 to 131061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,483 DEBUG Processing 518/757 atomic regions from SNP 155314 to 155914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,519 DEBUG Processing 118/674 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,551 DEBUG Processing 413/743 atomic regions from SNP 123643 to 124243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,574 DEBUG Processing 596/866 atomic regions from SNP 178616 to 179216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,735 DEBUG Processing 519/757 atomic regions from SNP 155614 to 156214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,742 DEBUG Processing 436/714 atomic regions from SNP 130761 to 131361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,766 DEBUG Processing 119/674 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,797 DEBUG Processing 414/743 atomic regions from SNP 123943 to 124543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,830 DEBUG Processing 597/866 atomic regions from SNP 178916 to 179516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,984 DEBUG Processing 520/757 atomic regions from SNP 155914 to 156514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,001 DEBUG Processing 120/674 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,004 DEBUG Processing 437/714 atomic regions from SNP 131061 to 131661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,036 DEBUG Processing 415/743 atomic regions from SNP 124243 to 124843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,078 DEBUG Processing 598/866 atomic regions from SNP 179216 to 179816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,222 DEBUG Processing 121/674 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,233 DEBUG Processing 521/757 atomic regions from SNP 156214 to 156814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,254 DEBUG Processing 438/714 atomic regions from SNP 131361 to 131961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,274 DEBUG Processing 416/743 atomic regions from SNP 124543 to 125143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,330 DEBUG Processing 599/866 atomic regions from SNP 179516 to 180116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,448 DEBUG Processing 122/674 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,511 DEBUG Processing 522/757 atomic regions from SNP 156514 to 157114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,514 DEBUG Processing 439/714 atomic regions from SNP 131661 to 132261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,521 DEBUG Processing 417/743 atomic regions from SNP 124843 to 125443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,597 DEBUG Processing 600/866 atomic regions from SNP 179816 to 180416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,675 DEBUG Processing 123/674 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,763 DEBUG Processing 523/757 atomic regions from SNP 156814 to 157414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,768 DEBUG Processing 418/743 atomic regions from SNP 125143 to 125743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,774 DEBUG Processing 440/714 atomic regions from SNP 131961 to 132561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,858 DEBUG Processing 601/866 atomic regions from SNP 180116 to 180716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,897 DEBUG Processing 124/674 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,014 DEBUG Processing 419/743 atomic regions from SNP 125443 to 126043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,018 DEBUG Processing 524/757 atomic regions from SNP 157114 to 157714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,030 DEBUG Processing 441/714 atomic regions from SNP 132261 to 132861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,126 DEBUG Processing 125/674 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,127 DEBUG Processing 602/866 atomic regions from SNP 180416 to 181016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,253 DEBUG Processing 420/743 atomic regions from SNP 125743 to 126343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,268 DEBUG Processing 525/757 atomic regions from SNP 157414 to 158014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,293 DEBUG Processing 442/714 atomic regions from SNP 132561 to 133161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,356 DEBUG Processing 126/674 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,396 DEBUG Processing 603/866 atomic regions from SNP 180716 to 181316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,501 DEBUG Processing 421/743 atomic regions from SNP 126043 to 126643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,522 DEBUG Processing 526/757 atomic regions from SNP 157714 to 158314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,570 DEBUG Processing 443/714 atomic regions from SNP 132861 to 133461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,605 DEBUG Processing 127/674 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,658 DEBUG Processing 604/866 atomic regions from SNP 181016 to 181616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,731 DEBUG Processing 422/743 atomic regions from SNP 126343 to 126943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,758 DEBUG Processing 527/757 atomic regions from SNP 158014 to 158614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,816 DEBUG Processing 444/714 atomic regions from SNP 133161 to 133761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,826 DEBUG Processing 128/674 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,911 DEBUG Processing 605/866 atomic regions from SNP 181316 to 181916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,961 DEBUG Processing 423/743 atomic regions from SNP 126643 to 127243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,996 DEBUG Processing 528/757 atomic regions from SNP 158314 to 158914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,050 DEBUG Processing 129/674 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,075 DEBUG Processing 445/714 atomic regions from SNP 133461 to 134061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,163 DEBUG Processing 606/866 atomic regions from SNP 181616 to 182216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,193 DEBUG Processing 424/743 atomic regions from SNP 126943 to 127543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,232 DEBUG Processing 529/757 atomic regions from SNP 158614 to 159214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,269 DEBUG Processing 130/674 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,329 DEBUG Processing 446/714 atomic regions from SNP 133761 to 134361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,434 DEBUG Processing 425/743 atomic regions from SNP 127243 to 127843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,439 DEBUG Processing 607/866 atomic regions from SNP 181916 to 182516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,485 DEBUG Processing 530/757 atomic regions from SNP 158914 to 159514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,488 DEBUG Processing 131/674 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,570 DEBUG Processing 447/714 atomic regions from SNP 134061 to 134661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,674 DEBUG Processing 426/743 atomic regions from SNP 127543 to 128143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,695 DEBUG Processing 608/866 atomic regions from SNP 182216 to 182816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,717 DEBUG Processing 132/674 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,727 DEBUG Processing 531/757 atomic regions from SNP 159214 to 159814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,822 DEBUG Processing 448/714 atomic regions from SNP 134361 to 134961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,903 DEBUG Processing 427/743 atomic regions from SNP 127843 to 128443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,939 DEBUG Processing 609/866 atomic regions from SNP 182516 to 183116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,970 DEBUG Processing 532/757 atomic regions from SNP 159514 to 160114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,971 DEBUG Processing 133/674 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,103 DEBUG Processing 449/714 atomic regions from SNP 134661 to 135261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,149 DEBUG Processing 428/743 atomic regions from SNP 128143 to 128743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,198 DEBUG Processing 610/866 atomic regions from SNP 182816 to 183416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,219 DEBUG Processing 533/757 atomic regions from SNP 159814 to 160414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,222 DEBUG Processing 134/674 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,362 DEBUG Processing 450/714 atomic regions from SNP 134961 to 135561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,398 DEBUG Processing 429/743 atomic regions from SNP 128443 to 129043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,458 DEBUG Processing 611/866 atomic regions from SNP 183116 to 183716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,459 DEBUG Processing 135/674 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,467 DEBUG Processing 534/757 atomic regions from SNP 160114 to 160714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,614 DEBUG Processing 451/714 atomic regions from SNP 135261 to 135861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,632 DEBUG Processing 430/743 atomic regions from SNP 128743 to 129343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,687 DEBUG Processing 136/674 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,706 DEBUG Processing 612/866 atomic regions from SNP 183416 to 184016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,710 DEBUG Processing 535/757 atomic regions from SNP 160414 to 161014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,862 DEBUG Processing 452/714 atomic regions from SNP 135561 to 136161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,873 DEBUG Processing 431/743 atomic regions from SNP 129043 to 129643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,937 DEBUG Processing 137/674 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,965 DEBUG Processing 613/866 atomic regions from SNP 183716 to 184316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,967 DEBUG Processing 536/757 atomic regions from SNP 160714 to 161314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,113 DEBUG Processing 453/714 atomic regions from SNP 135861 to 136461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,124 DEBUG Processing 432/743 atomic regions from SNP 129343 to 129943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,187 DEBUG Processing 138/674 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,216 DEBUG Processing 537/757 atomic regions from SNP 161014 to 161614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,225 DEBUG Processing 614/866 atomic regions from SNP 184016 to 184616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,270 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:51:46,272 DEBUG chr9: Signal quantile: 0.994. signal threshold: 14. Best RMSEA: 0.044 2025-01-31 09:51:46,361 DEBUG Processing 454/714 atomic regions from SNP 136161 to 136761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,364 DEBUG Processing 433/743 atomic regions from SNP 129643 to 130243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,440 DEBUG Processing 139/674 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,466 DEBUG Processing 538/757 atomic regions from SNP 161314 to 161914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,482 DEBUG Processing 615/866 atomic regions from SNP 184316 to 184916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,601 DEBUG Processing 434/743 atomic regions from SNP 129943 to 130543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,604 DEBUG Processing 455/714 atomic regions from SNP 136461 to 137061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,686 DEBUG Processing 140/674 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,720 DEBUG Processing 539/757 atomic regions from SNP 161614 to 162214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,740 DEBUG Processing 616/866 atomic regions from SNP 184616 to 185216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,850 DEBUG Processing 435/743 atomic regions from SNP 130243 to 130843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,851 DEBUG Processing 456/714 atomic regions from SNP 136761 to 137361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,939 DEBUG Processing 141/674 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,972 DEBUG Processing 540/757 atomic regions from SNP 161914 to 162514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,998 DEBUG Processing 617/866 atomic regions from SNP 184916 to 185516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,084 DEBUG Processing 436/743 atomic regions from SNP 130543 to 131143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,088 DEBUG Processing 457/714 atomic regions from SNP 137061 to 137661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,186 DEBUG Processing 142/674 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,208 DEBUG Processing 541/757 atomic regions from SNP 162214 to 162814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,250 DEBUG Processing 618/866 atomic regions from SNP 185216 to 185816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,319 DEBUG Processing 437/743 atomic regions from SNP 130843 to 131443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,322 DEBUG Processing 458/714 atomic regions from SNP 137361 to 137961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,424 DEBUG Processing 143/674 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,444 DEBUG Processing 542/757 atomic regions from SNP 162514 to 163114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,498 DEBUG Processing 619/866 atomic regions from SNP 185516 to 186116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,558 DEBUG Processing 438/743 atomic regions from SNP 131143 to 131743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,561 DEBUG Processing 459/714 atomic regions from SNP 137661 to 138261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,655 DEBUG Processing 144/674 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,677 DEBUG Processing 543/757 atomic regions from SNP 162814 to 163414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,746 DEBUG Processing 620/866 atomic regions from SNP 185816 to 186416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,800 DEBUG Processing 460/714 atomic regions from SNP 137961 to 138561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,801 DEBUG Processing 439/743 atomic regions from SNP 131443 to 132043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,879 DEBUG Processing 145/674 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,911 DEBUG Processing 544/757 atomic regions from SNP 163114 to 163714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,997 DEBUG Processing 621/866 atomic regions from SNP 186116 to 186716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,040 DEBUG Processing 461/714 atomic regions from SNP 138261 to 138861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,042 DEBUG Processing 440/743 atomic regions from SNP 131743 to 132343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,120 DEBUG Processing 146/674 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,138 DEBUG Processing 545/757 atomic regions from SNP 163414 to 164014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,243 DEBUG Processing 622/866 atomic regions from SNP 186416 to 187016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,281 DEBUG Processing 441/743 atomic regions from SNP 132043 to 132643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,282 DEBUG Processing 462/714 atomic regions from SNP 138561 to 139161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,366 DEBUG Processing 147/674 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,376 DEBUG Processing 546/757 atomic regions from SNP 163714 to 164314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,492 DEBUG Processing 623/866 atomic regions from SNP 186716 to 187316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,520 DEBUG Processing 442/743 atomic regions from SNP 132343 to 132943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,523 DEBUG Processing 463/714 atomic regions from SNP 138861 to 139461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,606 DEBUG Processing 148/674 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,619 DEBUG Processing 547/757 atomic regions from SNP 164014 to 164614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,647 DEBUG chr9 total SNP count: 220140 2025-01-31 09:51:48,648 DEBUG chr9 length: 124595110 2025-01-31 09:51:48,648 DEBUG ----------------------------------------- 2025-01-31 09:51:48,648 INFO Processing SNPs in chr9 2025-01-31 09:51:48,743 DEBUG Processing 624/866 atomic regions from SNP 187016 to 187616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,756 DEBUG Processing 443/743 atomic regions from SNP 132643 to 133243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,761 DEBUG Processing 464/714 atomic regions from SNP 139161 to 139761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,840 DEBUG Processing 149/674 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,869 DEBUG Processing 548/757 atomic regions from SNP 164314 to 164914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,877 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 220140)] 2025-01-31 09:51:48,990 DEBUG Processing 444/743 atomic regions from SNP 132943 to 133543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,996 DEBUG Processing 465/714 atomic regions from SNP 139461 to 140061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,008 DEBUG Processing 625/866 atomic regions from SNP 187316 to 187916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,035 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:49,076 DEBUG Processing 150/674 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,113 DEBUG Processing 549/757 atomic regions from SNP 164614 to 165214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,229 DEBUG Processing 445/743 atomic regions from SNP 133243 to 133843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,234 DEBUG Processing 466/714 atomic regions from SNP 139761 to 140361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,260 DEBUG Processing 626/866 atomic regions from SNP 187616 to 188216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,298 DEBUG Processing 151/674 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,352 DEBUG Processing 550/757 atomic regions from SNP 164914 to 165514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,476 DEBUG Processing 467/714 atomic regions from SNP 140061 to 140661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,480 DEBUG Processing 446/743 atomic regions from SNP 133543 to 134143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,526 DEBUG Processing 152/674 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,537 DEBUG Processing 627/866 atomic regions from SNP 187916 to 188516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,597 DEBUG Processing 551/757 atomic regions from SNP 165214 to 165814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,713 DEBUG Processing 468/714 atomic regions from SNP 140361 to 140961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,724 DEBUG Processing 447/743 atomic regions from SNP 133843 to 134443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,750 DEBUG Processing 153/674 atomic regions from SNP 45752 to 46353 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,791 DEBUG Processing 628/866 atomic regions from SNP 188216 to 188816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,836 DEBUG Processing 552/757 atomic regions from SNP 165514 to 166114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,950 DEBUG Processing 469/714 atomic regions from SNP 140661 to 141261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,965 DEBUG Processing 448/743 atomic regions from SNP 134143 to 134743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,971 DEBUG Processing 154/674 atomic regions from SNP 46053 to 46654 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,040 DEBUG Processing 629/866 atomic regions from SNP 188516 to 189116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,072 DEBUG Processing 553/757 atomic regions from SNP 165814 to 166414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,183 DEBUG Processing 470/714 atomic regions from SNP 140961 to 141561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,189 DEBUG Processing 155/674 atomic regions from SNP 46354 to 46955 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,197 DEBUG Processing 449/743 atomic regions from SNP 134443 to 135043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,287 DEBUG Processing 630/866 atomic regions from SNP 188816 to 189416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,304 DEBUG Processing 554/757 atomic regions from SNP 166114 to 166714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,407 DEBUG Processing 156/674 atomic regions from SNP 46655 to 47256 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,418 DEBUG Processing 471/714 atomic regions from SNP 141261 to 141861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,432 DEBUG Processing 450/743 atomic regions from SNP 134743 to 135343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,536 DEBUG Processing 631/866 atomic regions from SNP 189116 to 189716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,544 DEBUG Processing 555/757 atomic regions from SNP 166414 to 167014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,625 DEBUG Processing 157/674 atomic regions from SNP 46956 to 47557 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,654 DEBUG Processing 472/714 atomic regions from SNP 141561 to 142161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,664 DEBUG Processing 451/743 atomic regions from SNP 135043 to 135643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,783 DEBUG Processing 632/866 atomic regions from SNP 189416 to 190016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,785 DEBUG Processing 556/757 atomic regions from SNP 166714 to 167314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,850 DEBUG Processing 158/674 atomic regions from SNP 47257 to 47858 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,894 DEBUG Processing 473/714 atomic regions from SNP 141861 to 142461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,900 DEBUG Processing 452/743 atomic regions from SNP 135343 to 135943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,019 DEBUG Processing 557/757 atomic regions from SNP 167014 to 167614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,031 DEBUG Processing 633/866 atomic regions from SNP 189716 to 190316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,076 DEBUG Processing 159/674 atomic regions from SNP 47558 to 48159 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,134 DEBUG Processing 474/714 atomic regions from SNP 142161 to 142761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,135 DEBUG Processing 453/743 atomic regions from SNP 135643 to 136243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,254 DEBUG Processing 558/757 atomic regions from SNP 167314 to 167914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,279 DEBUG Processing 634/866 atomic regions from SNP 190016 to 190616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,320 DEBUG Processing 160/674 atomic regions from SNP 47859 to 48460 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,372 DEBUG Processing 454/743 atomic regions from SNP 135943 to 136543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,375 DEBUG Processing 475/714 atomic regions from SNP 142461 to 143061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,492 DEBUG Processing 559/757 atomic regions from SNP 167614 to 168214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,536 DEBUG Processing 635/866 atomic regions from SNP 190316 to 190916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,564 DEBUG Processing 161/674 atomic regions from SNP 48160 to 48761 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,611 DEBUG Processing 455/743 atomic regions from SNP 136243 to 136843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,615 DEBUG Processing 476/714 atomic regions from SNP 142761 to 143361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,723 DEBUG Processing 560/757 atomic regions from SNP 167914 to 168514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,787 DEBUG Processing 636/866 atomic regions from SNP 190616 to 191216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,809 DEBUG Processing 162/674 atomic regions from SNP 48461 to 49062 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,855 DEBUG Processing 456/743 atomic regions from SNP 136543 to 137143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,861 DEBUG Processing 477/714 atomic regions from SNP 143061 to 143661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,954 DEBUG Processing 561/757 atomic regions from SNP 168214 to 168814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,042 DEBUG Processing 637/866 atomic regions from SNP 190916 to 191516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,055 DEBUG Processing 163/674 atomic regions from SNP 48762 to 49363 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,094 DEBUG Processing 457/743 atomic regions from SNP 136843 to 137443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,103 DEBUG Processing 478/714 atomic regions from SNP 143361 to 143961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,183 DEBUG Processing 562/757 atomic regions from SNP 168514 to 169114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,285 DEBUG Processing 164/674 atomic regions from SNP 49063 to 49664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,289 DEBUG Processing 638/866 atomic regions from SNP 191216 to 191816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,330 DEBUG Processing 458/743 atomic regions from SNP 137143 to 137743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,342 DEBUG Processing 479/714 atomic regions from SNP 143661 to 144261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,412 DEBUG Processing 563/757 atomic regions from SNP 168814 to 169414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,507 DEBUG Processing 165/674 atomic regions from SNP 49364 to 49965 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,536 DEBUG Processing 639/866 atomic regions from SNP 191516 to 192116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,567 DEBUG Processing 459/743 atomic regions from SNP 137443 to 138043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,578 DEBUG Processing 480/714 atomic regions from SNP 143961 to 144561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,642 DEBUG Processing 564/757 atomic regions from SNP 169114 to 169714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,715 DEBUG Processing 166/674 atomic regions from SNP 49665 to 50266 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,786 DEBUG Processing 640/866 atomic regions from SNP 191816 to 192416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,803 DEBUG Processing 460/743 atomic regions from SNP 137743 to 138343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,815 DEBUG Processing 481/714 atomic regions from SNP 144261 to 144861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,876 DEBUG Processing 565/757 atomic regions from SNP 169414 to 170014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,925 DEBUG Processing 167/674 atomic regions from SNP 49966 to 50567 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,032 DEBUG Processing 641/866 atomic regions from SNP 192116 to 192716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,035 DEBUG Processing 461/743 atomic regions from SNP 138043 to 138643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,049 DEBUG Processing 482/714 atomic regions from SNP 144561 to 145161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,113 DEBUG Processing 566/757 atomic regions from SNP 169714 to 170314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,135 DEBUG Processing 168/674 atomic regions from SNP 50267 to 50868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,285 DEBUG Processing 462/743 atomic regions from SNP 138343 to 138943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,295 DEBUG Processing 483/714 atomic regions from SNP 144861 to 145461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,303 DEBUG Processing 642/866 atomic regions from SNP 192416 to 193016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,354 DEBUG Processing 567/757 atomic regions from SNP 170014 to 170614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,355 DEBUG Processing 169/674 atomic regions from SNP 50568 to 51169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,522 DEBUG Processing 463/743 atomic regions from SNP 138643 to 139243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,533 DEBUG Processing 484/714 atomic regions from SNP 145161 to 145761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,558 DEBUG Processing 643/866 atomic regions from SNP 192716 to 193316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,579 DEBUG Processing 170/674 atomic regions from SNP 50869 to 51470 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,597 DEBUG Processing 568/757 atomic regions from SNP 170314 to 170914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,773 DEBUG Processing 485/714 atomic regions from SNP 145461 to 146061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,776 DEBUG Processing 464/743 atomic regions from SNP 138943 to 139543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,802 DEBUG Processing 171/674 atomic regions from SNP 51170 to 51771 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,813 DEBUG Processing 644/866 atomic regions from SNP 193016 to 193616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,855 DEBUG Processing 569/757 atomic regions from SNP 170614 to 171214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,009 DEBUG Processing 486/714 atomic regions from SNP 145761 to 146361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,022 DEBUG Processing 172/674 atomic regions from SNP 51471 to 52072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,028 DEBUG Processing 465/743 atomic regions from SNP 139243 to 139843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,066 DEBUG Processing 645/866 atomic regions from SNP 193316 to 193916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,100 DEBUG Processing 570/757 atomic regions from SNP 170914 to 171514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,242 DEBUG Processing 487/714 atomic regions from SNP 146061 to 146661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,245 DEBUG Processing 173/674 atomic regions from SNP 51772 to 52373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,291 DEBUG Processing 466/743 atomic regions from SNP 139543 to 140143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,328 DEBUG Processing 646/866 atomic regions from SNP 193616 to 194216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,351 DEBUG Processing 571/757 atomic regions from SNP 171214 to 171814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,461 DEBUG Processing 174/674 atomic regions from SNP 52073 to 52674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,473 DEBUG Processing 488/714 atomic regions from SNP 146361 to 146961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,554 DEBUG Processing 467/743 atomic regions from SNP 139843 to 140443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,583 DEBUG Processing 647/866 atomic regions from SNP 193916 to 194516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,592 DEBUG Processing 572/757 atomic regions from SNP 171514 to 172114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,684 DEBUG Processing 175/674 atomic regions from SNP 52374 to 52975 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,723 DEBUG Processing 489/714 atomic regions from SNP 146661 to 147261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,802 DEBUG Processing 468/743 atomic regions from SNP 140143 to 140743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,831 DEBUG Processing 573/757 atomic regions from SNP 171814 to 172414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,837 DEBUG Processing 648/866 atomic regions from SNP 194216 to 194816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,913 DEBUG Processing 176/674 atomic regions from SNP 52675 to 53276 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,975 DEBUG Processing 490/714 atomic regions from SNP 146961 to 147561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,038 DEBUG Processing 469/743 atomic regions from SNP 140443 to 141043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,069 DEBUG Processing 574/757 atomic regions from SNP 172114 to 172714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,101 DEBUG Processing 649/866 atomic regions from SNP 194516 to 195116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,148 DEBUG Processing 177/674 atomic regions from SNP 52976 to 53577 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,210 DEBUG Processing 491/714 atomic regions from SNP 147261 to 147861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,286 DEBUG Processing 470/743 atomic regions from SNP 140743 to 141343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,305 DEBUG Processing 575/757 atomic regions from SNP 172414 to 173014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,367 DEBUG Processing 178/674 atomic regions from SNP 53277 to 53878 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,369 DEBUG Processing 650/866 atomic regions from SNP 194816 to 195416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,446 DEBUG Processing 492/714 atomic regions from SNP 147561 to 148161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,536 DEBUG Processing 576/757 atomic regions from SNP 172714 to 173314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,539 DEBUG Processing 471/743 atomic regions from SNP 141043 to 141643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,598 DEBUG Processing 179/674 atomic regions from SNP 53578 to 54179 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,637 DEBUG Processing 651/866 atomic regions from SNP 195116 to 195716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,688 DEBUG Processing 493/714 atomic regions from SNP 147861 to 148461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,764 DEBUG Processing 577/757 atomic regions from SNP 173014 to 173614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,788 DEBUG Processing 472/743 atomic regions from SNP 141343 to 141943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,817 DEBUG Processing 180/674 atomic regions from SNP 53879 to 54480 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,910 DEBUG Processing 652/866 atomic regions from SNP 195416 to 196016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,938 DEBUG Processing 494/714 atomic regions from SNP 148161 to 148761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,998 DEBUG Processing 578/757 atomic regions from SNP 173314 to 173914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,040 DEBUG Processing 181/674 atomic regions from SNP 54180 to 54781 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,057 DEBUG Processing 473/743 atomic regions from SNP 141643 to 142243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,194 DEBUG Processing 495/714 atomic regions from SNP 148461 to 149061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,206 DEBUG Processing 653/866 atomic regions from SNP 195716 to 196316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,248 DEBUG Processing 579/757 atomic regions from SNP 173614 to 174214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,267 DEBUG Processing 182/674 atomic regions from SNP 54481 to 55082 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,300 DEBUG Processing 474/743 atomic regions from SNP 141943 to 142543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,438 DEBUG Processing 496/714 atomic regions from SNP 148761 to 149361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,491 DEBUG Processing 654/866 atomic regions from SNP 196016 to 196616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,494 DEBUG Processing 183/674 atomic regions from SNP 54782 to 55383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,495 DEBUG Processing 580/757 atomic regions from SNP 173914 to 174514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,544 DEBUG Processing 475/743 atomic regions from SNP 142243 to 142843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,685 DEBUG Processing 497/714 atomic regions from SNP 149061 to 149661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,719 DEBUG Processing 184/674 atomic regions from SNP 55083 to 55684 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,742 DEBUG Processing 581/757 atomic regions from SNP 174214 to 174814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,771 DEBUG Processing 655/866 atomic regions from SNP 196316 to 196916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,789 DEBUG Processing 476/743 atomic regions from SNP 142543 to 143143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,928 DEBUG Processing 498/714 atomic regions from SNP 149361 to 149961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,952 DEBUG Processing 185/674 atomic regions from SNP 55384 to 55985 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,997 DEBUG Processing 582/757 atomic regions from SNP 174514 to 175114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,032 DEBUG Processing 477/743 atomic regions from SNP 142843 to 143443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,063 DEBUG Processing 656/866 atomic regions from SNP 196616 to 197216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,168 DEBUG Processing 499/714 atomic regions from SNP 149661 to 150261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,172 DEBUG Processing 186/674 atomic regions from SNP 55685 to 56286 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,239 DEBUG Processing 583/757 atomic regions from SNP 174814 to 175414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,271 DEBUG Processing 478/743 atomic regions from SNP 143143 to 143743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,323 DEBUG Processing 657/866 atomic regions from SNP 196916 to 197516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,389 DEBUG Processing 187/674 atomic regions from SNP 55986 to 56587 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,436 DEBUG Processing 500/714 atomic regions from SNP 149961 to 150561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,490 DEBUG Processing 584/757 atomic regions from SNP 175114 to 175714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,518 DEBUG Processing 479/743 atomic regions from SNP 143443 to 144043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,573 DEBUG Processing 658/866 atomic regions from SNP 197216 to 197816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,602 DEBUG Processing 188/674 atomic regions from SNP 56287 to 56888 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,691 DEBUG Processing 501/714 atomic regions from SNP 150261 to 150861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,731 DEBUG Processing 585/757 atomic regions from SNP 175414 to 176014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,749 DEBUG Processing 480/743 atomic regions from SNP 143743 to 144343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,816 DEBUG Processing 189/674 atomic regions from SNP 56588 to 57189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,822 DEBUG Processing 659/866 atomic regions from SNP 197516 to 198116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,937 DEBUG Processing 502/714 atomic regions from SNP 150561 to 151161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,968 DEBUG Processing 586/757 atomic regions from SNP 175714 to 176314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,991 DEBUG Processing 481/743 atomic regions from SNP 144043 to 144643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,037 DEBUG Processing 190/674 atomic regions from SNP 56889 to 57490 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,075 DEBUG Processing 660/866 atomic regions from SNP 197816 to 198416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,185 DEBUG Processing 503/714 atomic regions from SNP 150861 to 151461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,206 DEBUG Processing 587/757 atomic regions from SNP 176014 to 176614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,233 DEBUG Processing 482/743 atomic regions from SNP 144343 to 144943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,260 DEBUG Processing 191/674 atomic regions from SNP 57190 to 57791 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,344 DEBUG Processing 661/866 atomic regions from SNP 198116 to 198716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,433 DEBUG Processing 504/714 atomic regions from SNP 151161 to 151761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,457 DEBUG Processing 588/757 atomic regions from SNP 176314 to 176914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,475 DEBUG Processing 483/743 atomic regions from SNP 144643 to 145243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,490 DEBUG Processing 192/674 atomic regions from SNP 57491 to 58092 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,623 DEBUG Processing 662/866 atomic regions from SNP 198416 to 199016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,689 DEBUG Processing 505/714 atomic regions from SNP 151461 to 152061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,711 DEBUG Processing 589/757 atomic regions from SNP 176614 to 177214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,724 DEBUG Processing 193/674 atomic regions from SNP 57792 to 58393 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,725 DEBUG Processing 484/743 atomic regions from SNP 144943 to 145543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,887 DEBUG Processing 663/866 atomic regions from SNP 198716 to 199316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,950 DEBUG Processing 506/714 atomic regions from SNP 151761 to 152361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,953 DEBUG Processing 194/674 atomic regions from SNP 58093 to 58694 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,967 DEBUG Processing 590/757 atomic regions from SNP 176914 to 177514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,969 DEBUG Processing 485/743 atomic regions from SNP 145243 to 145843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,143 DEBUG Processing 664/866 atomic regions from SNP 199016 to 199616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,181 DEBUG Processing 195/674 atomic regions from SNP 58394 to 58995 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,196 DEBUG Processing 507/714 atomic regions from SNP 152061 to 152661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,215 DEBUG Processing 486/743 atomic regions from SNP 145543 to 146143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,217 DEBUG Processing 591/757 atomic regions from SNP 177214 to 177814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,409 DEBUG Processing 196/674 atomic regions from SNP 58695 to 59296 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,410 DEBUG Processing 665/866 atomic regions from SNP 199316 to 199916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,440 DEBUG Processing 508/714 atomic regions from SNP 152361 to 152961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,456 DEBUG Processing 487/743 atomic regions from SNP 145843 to 146443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,465 DEBUG Processing 592/757 atomic regions from SNP 177514 to 178114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,637 DEBUG Processing 197/674 atomic regions from SNP 58996 to 59597 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,684 DEBUG Processing 509/714 atomic regions from SNP 152661 to 153261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,690 DEBUG Processing 666/866 atomic regions from SNP 199616 to 200216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,704 DEBUG Processing 488/743 atomic regions from SNP 146143 to 146743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,721 DEBUG Processing 593/757 atomic regions from SNP 177814 to 178414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,864 DEBUG Processing 198/674 atomic regions from SNP 59297 to 59898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,932 DEBUG Processing 510/714 atomic regions from SNP 152961 to 153561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,960 DEBUG Processing 489/743 atomic regions from SNP 146443 to 147043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,971 DEBUG Processing 594/757 atomic regions from SNP 178114 to 178714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,975 DEBUG Processing 667/866 atomic regions from SNP 199916 to 200516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,091 DEBUG Processing 199/674 atomic regions from SNP 59598 to 60199 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,174 DEBUG Processing 511/714 atomic regions from SNP 153261 to 153861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,208 DEBUG Processing 490/743 atomic regions from SNP 146743 to 147343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,225 DEBUG Processing 595/757 atomic regions from SNP 178414 to 179014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,264 DEBUG Processing 668/866 atomic regions from SNP 200216 to 200816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,330 DEBUG Processing 200/674 atomic regions from SNP 59899 to 60500 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,407 DEBUG Processing 512/714 atomic regions from SNP 153561 to 154161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,444 DEBUG Processing 491/743 atomic regions from SNP 147043 to 147643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,467 DEBUG Processing 596/757 atomic regions from SNP 178714 to 179314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,557 DEBUG Processing 669/866 atomic regions from SNP 200516 to 201116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,561 DEBUG Processing 201/674 atomic regions from SNP 60200 to 60801 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,646 DEBUG Processing 513/714 atomic regions from SNP 153861 to 154461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,688 DEBUG Processing 492/743 atomic regions from SNP 147343 to 147943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,712 DEBUG Processing 597/757 atomic regions from SNP 179014 to 179614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,789 DEBUG Processing 202/674 atomic regions from SNP 60501 to 61102 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,823 DEBUG Processing 670/866 atomic regions from SNP 200816 to 201416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,887 DEBUG Processing 514/714 atomic regions from SNP 154161 to 154761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,944 DEBUG Processing 493/743 atomic regions from SNP 147643 to 148243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,950 DEBUG Processing 598/757 atomic regions from SNP 179314 to 179914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,023 DEBUG Processing 203/674 atomic regions from SNP 60802 to 61403 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,095 DEBUG Processing 671/866 atomic regions from SNP 201116 to 201716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,138 DEBUG Processing 515/714 atomic regions from SNP 154461 to 155061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,192 DEBUG Processing 494/743 atomic regions from SNP 147943 to 148543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,204 DEBUG Processing 599/757 atomic regions from SNP 179614 to 180214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,253 DEBUG Processing 204/674 atomic regions from SNP 61103 to 61704 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,361 DEBUG Processing 672/866 atomic regions from SNP 201416 to 202016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,381 DEBUG Processing 516/714 atomic regions from SNP 154761 to 155361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,429 DEBUG Processing 495/743 atomic regions from SNP 148243 to 148843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,443 DEBUG Processing 600/757 atomic regions from SNP 179914 to 180514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,471 DEBUG Processing 205/674 atomic regions from SNP 61404 to 62005 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,623 DEBUG Processing 673/866 atomic regions from SNP 201716 to 202316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,625 DEBUG Processing 517/714 atomic regions from SNP 155061 to 155661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,665 DEBUG Processing 496/743 atomic regions from SNP 148543 to 149143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,684 DEBUG Processing 601/757 atomic regions from SNP 180214 to 180814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,690 DEBUG Processing 206/674 atomic regions from SNP 61705 to 62306 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,872 DEBUG Processing 518/714 atomic regions from SNP 155361 to 155961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,886 DEBUG Processing 674/866 atomic regions from SNP 202016 to 202616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,908 DEBUG Processing 497/743 atomic regions from SNP 148843 to 149443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,914 DEBUG Processing 207/674 atomic regions from SNP 62006 to 62607 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,928 DEBUG Processing 602/757 atomic regions from SNP 180514 to 181114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,121 DEBUG Processing 519/714 atomic regions from SNP 155661 to 156261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,143 DEBUG Processing 208/674 atomic regions from SNP 62307 to 62908 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,148 DEBUG Processing 675/866 atomic regions from SNP 202316 to 202916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,149 DEBUG Processing 498/743 atomic regions from SNP 149143 to 149743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,174 DEBUG Processing 603/757 atomic regions from SNP 180814 to 181414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,374 DEBUG Processing 520/714 atomic regions from SNP 155961 to 156561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,378 DEBUG Processing 209/674 atomic regions from SNP 62608 to 63209 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,399 DEBUG Processing 499/743 atomic regions from SNP 149443 to 150043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,412 DEBUG Processing 676/866 atomic regions from SNP 202616 to 203216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,420 DEBUG Processing 604/757 atomic regions from SNP 181114 to 181714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,617 DEBUG Processing 210/674 atomic regions from SNP 62909 to 63510 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,617 DEBUG Processing 521/714 atomic regions from SNP 156261 to 156861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,639 DEBUG Processing 500/743 atomic regions from SNP 149743 to 150343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,663 DEBUG Processing 605/757 atomic regions from SNP 181414 to 182014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,671 DEBUG Processing 677/866 atomic regions from SNP 202916 to 203516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,855 DEBUG Processing 522/714 atomic regions from SNP 156561 to 157161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,868 DEBUG Processing 211/674 atomic regions from SNP 63210 to 63811 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,873 DEBUG Processing 501/743 atomic regions from SNP 150043 to 150643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,908 DEBUG Processing 606/757 atomic regions from SNP 181714 to 182314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,928 DEBUG Processing 678/866 atomic regions from SNP 203216 to 203816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,097 DEBUG Processing 212/674 atomic regions from SNP 63511 to 64112 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,099 DEBUG Processing 523/714 atomic regions from SNP 156861 to 157461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,113 DEBUG Processing 502/743 atomic regions from SNP 150343 to 150943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,160 DEBUG Processing 607/757 atomic regions from SNP 182014 to 182614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,192 DEBUG Processing 679/866 atomic regions from SNP 203516 to 204116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,323 DEBUG Processing 213/674 atomic regions from SNP 63812 to 64413 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,339 DEBUG Processing 524/714 atomic regions from SNP 157161 to 157761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,352 DEBUG Processing 503/743 atomic regions from SNP 150643 to 151243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,405 DEBUG Processing 608/757 atomic regions from SNP 182314 to 182914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,469 DEBUG Processing 680/866 atomic regions from SNP 203816 to 204416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,553 DEBUG Processing 214/674 atomic regions from SNP 64113 to 64714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,589 DEBUG Processing 525/714 atomic regions from SNP 157461 to 158061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,597 DEBUG Processing 504/743 atomic regions from SNP 150943 to 151543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,671 DEBUG Processing 609/757 atomic regions from SNP 182614 to 183214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,761 DEBUG Processing 681/866 atomic regions from SNP 204116 to 204716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,800 DEBUG Processing 215/674 atomic regions from SNP 64414 to 65015 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,848 DEBUG Processing 526/714 atomic regions from SNP 157761 to 158361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,855 DEBUG Processing 505/743 atomic regions from SNP 151243 to 151843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,927 DEBUG Processing 610/757 atomic regions from SNP 182914 to 183514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,031 DEBUG Processing 216/674 atomic regions from SNP 64715 to 65316 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,037 DEBUG Processing 682/866 atomic regions from SNP 204416 to 205016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,095 DEBUG Processing 527/714 atomic regions from SNP 158061 to 158661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,105 DEBUG Processing 506/743 atomic regions from SNP 151543 to 152143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,172 DEBUG Processing 611/757 atomic regions from SNP 183214 to 183814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,255 DEBUG Processing 217/674 atomic regions from SNP 65016 to 65617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,305 DEBUG Processing 683/866 atomic regions from SNP 204716 to 205316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,341 DEBUG Processing 528/714 atomic regions from SNP 158361 to 158961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,348 DEBUG Processing 507/743 atomic regions from SNP 151843 to 152443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,415 DEBUG Processing 612/757 atomic regions from SNP 183514 to 184114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,484 DEBUG Processing 218/674 atomic regions from SNP 65317 to 65918 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,570 DEBUG Processing 684/866 atomic regions from SNP 205016 to 205616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,595 DEBUG Processing 529/714 atomic regions from SNP 158661 to 159261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,597 DEBUG Processing 508/743 atomic regions from SNP 152143 to 152743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,664 DEBUG Processing 613/757 atomic regions from SNP 183814 to 184414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,712 DEBUG Processing 219/674 atomic regions from SNP 65618 to 66219 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,833 DEBUG Processing 685/866 atomic regions from SNP 205316 to 205916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,839 DEBUG Processing 509/743 atomic regions from SNP 152443 to 153043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,841 DEBUG Processing 530/714 atomic regions from SNP 158961 to 159561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,905 DEBUG Processing 614/757 atomic regions from SNP 184114 to 184714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,950 DEBUG Processing 220/674 atomic regions from SNP 65919 to 66520 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,082 DEBUG Processing 510/743 atomic regions from SNP 152743 to 153343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,085 DEBUG Processing 531/714 atomic regions from SNP 159261 to 159861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,103 DEBUG Processing 686/866 atomic regions from SNP 205616 to 206216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,152 DEBUG Processing 615/757 atomic regions from SNP 184414 to 185014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,192 DEBUG Processing 221/674 atomic regions from SNP 66220 to 66821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,324 DEBUG Processing 511/743 atomic regions from SNP 153043 to 153643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,333 DEBUG Processing 532/714 atomic regions from SNP 159561 to 160161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,379 DEBUG Processing 687/866 atomic regions from SNP 205916 to 206516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,404 DEBUG Processing 616/757 atomic regions from SNP 184714 to 185314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,433 DEBUG Processing 222/674 atomic regions from SNP 66521 to 67122 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,583 DEBUG Processing 512/743 atomic regions from SNP 153343 to 153943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,595 DEBUG Processing 533/714 atomic regions from SNP 159861 to 160461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,659 DEBUG Processing 617/757 atomic regions from SNP 185014 to 185614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,662 DEBUG Processing 688/866 atomic regions from SNP 206216 to 206816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,692 DEBUG Processing 223/674 atomic regions from SNP 66822 to 67423 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,825 DEBUG Processing 513/743 atomic regions from SNP 153643 to 154243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,861 DEBUG Processing 534/714 atomic regions from SNP 160161 to 160761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,925 DEBUG Processing 618/757 atomic regions from SNP 185314 to 185914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,948 DEBUG Processing 224/674 atomic regions from SNP 67123 to 67724 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,961 DEBUG Processing 689/866 atomic regions from SNP 206516 to 207116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,065 DEBUG Processing 514/743 atomic regions from SNP 153943 to 154543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,120 DEBUG Processing 535/714 atomic regions from SNP 160461 to 161061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,176 DEBUG Processing 619/757 atomic regions from SNP 185614 to 186214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,183 DEBUG Processing 225/674 atomic regions from SNP 67424 to 68025 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,251 DEBUG Processing 690/866 atomic regions from SNP 206816 to 207416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,312 DEBUG Processing 515/743 atomic regions from SNP 154243 to 154843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,370 DEBUG Processing 536/714 atomic regions from SNP 160761 to 161361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,417 DEBUG Processing 226/674 atomic regions from SNP 67725 to 68326 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,432 DEBUG Processing 620/757 atomic regions from SNP 185914 to 186514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,517 DEBUG Processing 691/866 atomic regions from SNP 207116 to 207716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,544 DEBUG Processing 516/743 atomic regions from SNP 154543 to 155143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,612 DEBUG Processing 537/714 atomic regions from SNP 161061 to 161661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,643 DEBUG Processing 227/674 atomic regions from SNP 68026 to 68627 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,673 DEBUG Processing 621/757 atomic regions from SNP 186214 to 186814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,771 DEBUG Processing 692/866 atomic regions from SNP 207416 to 208016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,782 DEBUG Processing 517/743 atomic regions from SNP 154843 to 155443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,851 DEBUG Processing 538/714 atomic regions from SNP 161361 to 161961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,862 DEBUG Processing 228/674 atomic regions from SNP 68327 to 68928 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,907 DEBUG Processing 622/757 atomic regions from SNP 186514 to 187114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,019 DEBUG Processing 518/743 atomic regions from SNP 155143 to 155743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,024 DEBUG Processing 693/866 atomic regions from SNP 207716 to 208316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,089 DEBUG Processing 539/714 atomic regions from SNP 161661 to 162261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,092 DEBUG Processing 229/674 atomic regions from SNP 68628 to 69229 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,141 DEBUG Processing 623/757 atomic regions from SNP 186814 to 187414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,249 DEBUG Processing 519/743 atomic regions from SNP 155443 to 156043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,286 DEBUG Processing 694/866 atomic regions from SNP 208016 to 208616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,324 DEBUG Processing 230/674 atomic regions from SNP 68929 to 69530 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,332 DEBUG Processing 540/714 atomic regions from SNP 161961 to 162561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,382 DEBUG Processing 624/757 atomic regions from SNP 187114 to 187714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,481 DEBUG Processing 520/743 atomic regions from SNP 155743 to 156343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,556 DEBUG Processing 231/674 atomic regions from SNP 69230 to 69831 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,570 DEBUG Processing 695/866 atomic regions from SNP 208316 to 208916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,582 DEBUG Processing 541/714 atomic regions from SNP 162261 to 162861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,628 DEBUG Processing 625/757 atomic regions from SNP 187414 to 188014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,712 DEBUG Processing 521/743 atomic regions from SNP 156043 to 156643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,779 DEBUG Processing 232/674 atomic regions from SNP 69531 to 70132 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,823 DEBUG Processing 542/714 atomic regions from SNP 162561 to 163161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,841 DEBUG Processing 696/866 atomic regions from SNP 208616 to 209216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,870 DEBUG Processing 626/757 atomic regions from SNP 187714 to 188314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,942 DEBUG Processing 522/743 atomic regions from SNP 156343 to 156943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,001 DEBUG Processing 233/674 atomic regions from SNP 69832 to 70433 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,064 DEBUG Processing 543/714 atomic regions from SNP 162861 to 163461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,115 DEBUG Processing 627/757 atomic regions from SNP 188014 to 188614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,120 DEBUG Processing 697/866 atomic regions from SNP 208916 to 209516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,175 DEBUG Processing 523/743 atomic regions from SNP 156643 to 157243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,215 DEBUG Processing 234/674 atomic regions from SNP 70133 to 70734 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,300 DEBUG Processing 544/714 atomic regions from SNP 163161 to 163761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,358 DEBUG Processing 628/757 atomic regions from SNP 188314 to 188914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,401 DEBUG Processing 698/866 atomic regions from SNP 209216 to 209816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,417 DEBUG Processing 524/743 atomic regions from SNP 156943 to 157543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,439 DEBUG Processing 235/674 atomic regions from SNP 70434 to 71035 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,541 DEBUG Processing 545/714 atomic regions from SNP 163461 to 164061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,613 DEBUG Processing 629/757 atomic regions from SNP 188614 to 189214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,661 DEBUG Processing 525/743 atomic regions from SNP 157243 to 157843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,664 DEBUG Processing 236/674 atomic regions from SNP 70735 to 71336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,683 DEBUG Processing 699/866 atomic regions from SNP 209516 to 210116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,773 DEBUG Processing 546/714 atomic regions from SNP 163761 to 164361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,877 DEBUG Processing 630/757 atomic regions from SNP 188914 to 189514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,892 DEBUG Processing 237/674 atomic regions from SNP 71036 to 71637 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,902 DEBUG Processing 526/743 atomic regions from SNP 157543 to 158143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,971 DEBUG Processing 700/866 atomic regions from SNP 209816 to 210416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,007 DEBUG Processing 547/714 atomic regions from SNP 164061 to 164661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,122 DEBUG Processing 238/674 atomic regions from SNP 71337 to 71938 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,125 DEBUG Processing 631/757 atomic regions from SNP 189214 to 189814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,142 DEBUG Processing 527/743 atomic regions from SNP 157843 to 158443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,245 DEBUG Processing 548/714 atomic regions from SNP 164361 to 164961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,246 DEBUG Processing 701/866 atomic regions from SNP 210116 to 210716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,349 DEBUG Processing 239/674 atomic regions from SNP 71638 to 72239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,369 DEBUG Processing 632/757 atomic regions from SNP 189514 to 190114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,399 DEBUG Processing 528/743 atomic regions from SNP 158143 to 158743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,480 DEBUG Processing 549/714 atomic regions from SNP 164661 to 165261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,512 DEBUG Processing 702/866 atomic regions from SNP 210416 to 211016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,575 DEBUG Processing 240/674 atomic regions from SNP 71939 to 72540 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,615 DEBUG Processing 633/757 atomic regions from SNP 189814 to 190414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,653 DEBUG Processing 529/743 atomic regions from SNP 158443 to 159043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,726 DEBUG Processing 550/714 atomic regions from SNP 164961 to 165561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,783 DEBUG Processing 703/866 atomic regions from SNP 210716 to 211316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,813 DEBUG Processing 241/674 atomic regions from SNP 72240 to 72841 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,869 DEBUG Processing 634/757 atomic regions from SNP 190114 to 190714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,918 DEBUG Processing 530/743 atomic regions from SNP 158743 to 159343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,971 DEBUG Processing 551/714 atomic regions from SNP 165261 to 165861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,045 DEBUG Processing 704/866 atomic regions from SNP 211016 to 211616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,046 DEBUG Processing 242/674 atomic regions from SNP 72541 to 73142 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,115 DEBUG Processing 635/757 atomic regions from SNP 190414 to 191014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,170 DEBUG Processing 531/743 atomic regions from SNP 159043 to 159643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,213 DEBUG Processing 552/714 atomic regions from SNP 165561 to 166161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,288 DEBUG Processing 243/674 atomic regions from SNP 72842 to 73443 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,306 DEBUG Processing 705/866 atomic regions from SNP 211316 to 211916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,357 DEBUG Processing 636/757 atomic regions from SNP 190714 to 191314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,428 DEBUG Processing 532/743 atomic regions from SNP 159343 to 159943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,458 DEBUG Processing 553/714 atomic regions from SNP 165861 to 166461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,531 DEBUG Processing 244/674 atomic regions from SNP 73143 to 73744 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,568 DEBUG Processing 706/866 atomic regions from SNP 211616 to 212216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,607 DEBUG Processing 637/757 atomic regions from SNP 191014 to 191614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,690 DEBUG Processing 533/743 atomic regions from SNP 159643 to 160243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,706 DEBUG Processing 554/714 atomic regions from SNP 166161 to 166761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,774 DEBUG Processing 245/674 atomic regions from SNP 73444 to 74045 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,839 DEBUG Processing 707/866 atomic regions from SNP 211916 to 212516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,858 DEBUG Processing 638/757 atomic regions from SNP 191314 to 191914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,951 DEBUG Processing 555/714 atomic regions from SNP 166461 to 167061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,957 DEBUG Processing 534/743 atomic regions from SNP 159943 to 160543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,003 DEBUG Processing 246/674 atomic regions from SNP 73745 to 74346 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,108 DEBUG Processing 639/757 atomic regions from SNP 191614 to 192214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,115 DEBUG Processing 708/866 atomic regions from SNP 212216 to 212816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,185 DEBUG Processing 556/714 atomic regions from SNP 166761 to 167361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,217 DEBUG Processing 535/743 atomic regions from SNP 160243 to 160843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,219 DEBUG Processing 247/674 atomic regions from SNP 74046 to 74647 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,350 DEBUG Processing 640/757 atomic regions from SNP 191914 to 192514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,384 DEBUG Processing 709/866 atomic regions from SNP 212516 to 213116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,419 DEBUG Processing 557/714 atomic regions from SNP 167061 to 167661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,456 DEBUG Processing 248/674 atomic regions from SNP 74347 to 74948 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,474 DEBUG Processing 536/743 atomic regions from SNP 160543 to 161143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,598 DEBUG Processing 641/757 atomic regions from SNP 192214 to 192814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,661 DEBUG Processing 558/714 atomic regions from SNP 167361 to 167961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,664 DEBUG Processing 710/866 atomic regions from SNP 212816 to 213416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,708 DEBUG Processing 249/674 atomic regions from SNP 74648 to 75249 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,730 DEBUG Processing 537/743 atomic regions from SNP 160843 to 161443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,834 DEBUG Processing 642/757 atomic regions from SNP 192514 to 193114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,894 DEBUG Processing 559/714 atomic regions from SNP 167661 to 168261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,929 DEBUG Processing 711/866 atomic regions from SNP 213116 to 213716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,945 DEBUG Processing 250/674 atomic regions from SNP 74949 to 75550 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,987 DEBUG Processing 538/743 atomic regions from SNP 161143 to 161743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,072 DEBUG Processing 643/757 atomic regions from SNP 192814 to 193414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,126 DEBUG Processing 560/714 atomic regions from SNP 167961 to 168561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,182 DEBUG Processing 712/866 atomic regions from SNP 213416 to 214016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,184 DEBUG Processing 251/674 atomic regions from SNP 75250 to 75851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,240 DEBUG Processing 539/743 atomic regions from SNP 161443 to 162043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,307 DEBUG Processing 644/757 atomic regions from SNP 193114 to 193714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,351 DEBUG Processing 561/714 atomic regions from SNP 168261 to 168861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,402 DEBUG Processing 252/674 atomic regions from SNP 75551 to 76152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,434 DEBUG Processing 713/866 atomic regions from SNP 213716 to 214316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,506 DEBUG Processing 540/743 atomic regions from SNP 161743 to 162343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,561 DEBUG Processing 645/757 atomic regions from SNP 193414 to 194014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,605 DEBUG Processing 562/714 atomic regions from SNP 168561 to 169161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,615 DEBUG Processing 253/674 atomic regions from SNP 75852 to 76453 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,686 DEBUG Processing 714/866 atomic regions from SNP 214016 to 214616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,760 DEBUG Processing 541/743 atomic regions from SNP 162043 to 162643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,805 DEBUG Processing 646/757 atomic regions from SNP 193714 to 194314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,831 DEBUG Processing 254/674 atomic regions from SNP 76153 to 76754 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,863 DEBUG Processing 563/714 atomic regions from SNP 168861 to 169461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,939 DEBUG Processing 715/866 atomic regions from SNP 214316 to 214916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,003 DEBUG Processing 542/743 atomic regions from SNP 162343 to 162943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,048 DEBUG Processing 647/757 atomic regions from SNP 194014 to 194614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,050 DEBUG Processing 255/674 atomic regions from SNP 76454 to 77055 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,110 DEBUG Processing 564/714 atomic regions from SNP 169161 to 169761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,189 DEBUG Processing 716/866 atomic regions from SNP 214616 to 215216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,245 DEBUG Processing 543/743 atomic regions from SNP 162643 to 163243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,277 DEBUG Processing 256/674 atomic regions from SNP 76755 to 77356 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,292 DEBUG Processing 648/757 atomic regions from SNP 194314 to 194914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,358 DEBUG Processing 565/714 atomic regions from SNP 169461 to 170061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,439 DEBUG Processing 717/866 atomic regions from SNP 214916 to 215516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,485 DEBUG Processing 544/743 atomic regions from SNP 162943 to 163543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,514 DEBUG Processing 257/674 atomic regions from SNP 77056 to 77657 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,540 DEBUG Processing 649/757 atomic regions from SNP 194614 to 195214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,596 DEBUG Processing 566/714 atomic regions from SNP 169761 to 170361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,712 DEBUG Processing 718/866 atomic regions from SNP 215216 to 215816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,722 DEBUG Processing 545/743 atomic regions from SNP 163243 to 163843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,764 DEBUG Processing 258/674 atomic regions from SNP 77357 to 77958 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,786 DEBUG Processing 650/757 atomic regions from SNP 194914 to 195514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,831 DEBUG Processing 567/714 atomic regions from SNP 170061 to 170661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,959 DEBUG Processing 546/743 atomic regions from SNP 163543 to 164143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,984 DEBUG Processing 719/866 atomic regions from SNP 215516 to 216116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,013 DEBUG Processing 259/674 atomic regions from SNP 77658 to 78259 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,029 DEBUG Processing 651/757 atomic regions from SNP 195214 to 195814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,064 DEBUG Processing 568/714 atomic regions from SNP 170361 to 170961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,193 DEBUG Processing 547/743 atomic regions from SNP 163843 to 164443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,276 DEBUG Processing 260/674 atomic regions from SNP 77959 to 78560 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,285 DEBUG Processing 652/757 atomic regions from SNP 195514 to 196114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,290 DEBUG Processing 720/866 atomic regions from SNP 215816 to 216416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,317 DEBUG Processing 569/714 atomic regions from SNP 170661 to 171261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,439 DEBUG Processing 548/743 atomic regions from SNP 164143 to 164743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,529 DEBUG Processing 261/674 atomic regions from SNP 78260 to 78861 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,530 DEBUG Processing 653/757 atomic regions from SNP 195814 to 196414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,567 DEBUG Processing 570/714 atomic regions from SNP 170961 to 171561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,578 DEBUG Processing 721/866 atomic regions from SNP 216116 to 216716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,670 DEBUG Processing 549/743 atomic regions from SNP 164443 to 165043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,769 DEBUG Processing 262/674 atomic regions from SNP 78561 to 79162 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,771 DEBUG Processing 654/757 atomic regions from SNP 196114 to 196714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,814 DEBUG Processing 571/714 atomic regions from SNP 171261 to 171861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,865 DEBUG Processing 722/866 atomic regions from SNP 216416 to 217016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,900 DEBUG Processing 550/743 atomic regions from SNP 164743 to 165343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,013 DEBUG Processing 655/757 atomic regions from SNP 196414 to 197014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,014 DEBUG Processing 263/674 atomic regions from SNP 78862 to 79463 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,063 DEBUG Processing 572/714 atomic regions from SNP 171561 to 172161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,136 DEBUG Processing 551/743 atomic regions from SNP 165043 to 165643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,150 DEBUG Processing 723/866 atomic regions from SNP 216716 to 217316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,251 DEBUG Processing 656/757 atomic regions from SNP 196714 to 197314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,259 DEBUG Processing 264/674 atomic regions from SNP 79163 to 79764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,303 DEBUG Processing 573/714 atomic regions from SNP 171861 to 172461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,371 DEBUG Processing 552/743 atomic regions from SNP 165343 to 165943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,419 DEBUG Processing 724/866 atomic regions from SNP 217016 to 217616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,493 DEBUG Processing 657/757 atomic regions from SNP 197014 to 197614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,500 DEBUG Processing 265/674 atomic regions from SNP 79464 to 80065 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,544 DEBUG Processing 574/714 atomic regions from SNP 172161 to 172761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,608 DEBUG Processing 553/743 atomic regions from SNP 165643 to 166243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,677 DEBUG Processing 725/866 atomic regions from SNP 217316 to 217916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,738 DEBUG Processing 658/757 atomic regions from SNP 197314 to 197914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,759 DEBUG Processing 266/674 atomic regions from SNP 79765 to 80366 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,783 DEBUG Processing 575/714 atomic regions from SNP 172461 to 173061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,844 DEBUG Processing 554/743 atomic regions from SNP 165943 to 166543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,924 DEBUG Processing 726/866 atomic regions from SNP 217616 to 218216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,981 DEBUG Processing 659/757 atomic regions from SNP 197614 to 198214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,023 DEBUG Processing 267/674 atomic regions from SNP 80066 to 80667 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,026 DEBUG Processing 576/714 atomic regions from SNP 172761 to 173361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,084 DEBUG Processing 555/743 atomic regions from SNP 166243 to 166843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,171 DEBUG Processing 727/866 atomic regions from SNP 217916 to 218516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,222 DEBUG Processing 660/757 atomic regions from SNP 197914 to 198514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,275 DEBUG Processing 577/714 atomic regions from SNP 173061 to 173661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,283 DEBUG Processing 268/674 atomic regions from SNP 80367 to 80968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,320 DEBUG Processing 556/743 atomic regions from SNP 166543 to 167143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,417 DEBUG Processing 728/866 atomic regions from SNP 218216 to 218816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,460 DEBUG Processing 661/757 atomic regions from SNP 198214 to 198814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,522 DEBUG Processing 269/674 atomic regions from SNP 80668 to 81269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,537 DEBUG Processing 578/714 atomic regions from SNP 173361 to 173961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,564 DEBUG Processing 557/743 atomic regions from SNP 166843 to 167443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,667 DEBUG Processing 729/866 atomic regions from SNP 218516 to 219116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,682 DEBUG Segmenting atomic regions: 2025-01-31 09:52:16,701 DEBUG Processing 662/757 atomic regions from SNP 198514 to 199114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,753 DEBUG Processing 270/674 atomic regions from SNP 80969 to 81570 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,783 DEBUG Processing 1/732 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,795 DEBUG Processing 579/714 atomic regions from SNP 173661 to 174261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,802 DEBUG Processing 558/743 atomic regions from SNP 167143 to 167743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,914 DEBUG Processing 730/866 atomic regions from SNP 218816 to 219416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,937 DEBUG Processing 663/757 atomic regions from SNP 198814 to 199414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,983 DEBUG Processing 271/674 atomic regions from SNP 81270 to 81871 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,022 DEBUG Processing 2/732 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,042 DEBUG Processing 580/714 atomic regions from SNP 173961 to 174561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,046 DEBUG Processing 559/743 atomic regions from SNP 167443 to 168043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,165 DEBUG Processing 731/866 atomic regions from SNP 219116 to 219716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,177 DEBUG Processing 664/757 atomic regions from SNP 199114 to 199714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,216 DEBUG Processing 272/674 atomic regions from SNP 81571 to 82172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,260 DEBUG Processing 3/732 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,287 DEBUG Processing 581/714 atomic regions from SNP 174261 to 174861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,289 DEBUG Processing 560/743 atomic regions from SNP 167743 to 168343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,417 DEBUG Processing 665/757 atomic regions from SNP 199414 to 200014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,418 DEBUG Processing 732/866 atomic regions from SNP 219416 to 220016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,445 DEBUG Processing 273/674 atomic regions from SNP 81872 to 82473 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,495 DEBUG Processing 4/732 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,529 DEBUG Processing 582/714 atomic regions from SNP 174561 to 175161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,530 DEBUG Processing 561/743 atomic regions from SNP 168043 to 168643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,664 DEBUG Processing 666/757 atomic regions from SNP 199714 to 200314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,674 DEBUG Processing 733/866 atomic regions from SNP 219716 to 220316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,678 DEBUG Processing 274/674 atomic regions from SNP 82173 to 82774 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,727 DEBUG Processing 5/732 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,767 DEBUG Processing 583/714 atomic regions from SNP 174861 to 175461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,769 DEBUG Processing 562/743 atomic regions from SNP 168343 to 168943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,913 DEBUG Processing 667/757 atomic regions from SNP 200014 to 200614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,915 DEBUG Processing 275/674 atomic regions from SNP 82474 to 83075 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,937 DEBUG Processing 734/866 atomic regions from SNP 220016 to 220616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,968 DEBUG Processing 6/732 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,007 DEBUG Processing 584/714 atomic regions from SNP 175161 to 175761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,008 DEBUG Processing 563/743 atomic regions from SNP 168643 to 169243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,156 DEBUG Processing 276/674 atomic regions from SNP 82775 to 83376 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,161 DEBUG Processing 668/757 atomic regions from SNP 200314 to 200914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,216 DEBUG Processing 7/732 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,221 DEBUG Processing 735/866 atomic regions from SNP 220316 to 220916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,247 DEBUG Processing 585/714 atomic regions from SNP 175461 to 176061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,258 DEBUG Processing 564/743 atomic regions from SNP 168943 to 169543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,397 DEBUG Processing 277/674 atomic regions from SNP 83076 to 83677 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,403 DEBUG Processing 669/757 atomic regions from SNP 200614 to 201214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,457 DEBUG Processing 8/732 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,493 DEBUG Processing 586/714 atomic regions from SNP 175761 to 176361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,504 DEBUG Processing 565/743 atomic regions from SNP 169243 to 169843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,505 DEBUG Processing 736/866 atomic regions from SNP 220616 to 221216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,637 DEBUG Processing 278/674 atomic regions from SNP 83377 to 83978 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,651 DEBUG Processing 670/757 atomic regions from SNP 200914 to 201514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,700 DEBUG Processing 9/732 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,744 DEBUG Processing 587/714 atomic regions from SNP 176061 to 176661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,752 DEBUG Processing 566/743 atomic regions from SNP 169543 to 170143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,790 DEBUG Processing 737/866 atomic regions from SNP 220916 to 221516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,877 DEBUG Processing 279/674 atomic regions from SNP 83678 to 84279 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,899 DEBUG Processing 671/757 atomic regions from SNP 201214 to 201814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,939 DEBUG Processing 10/732 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,990 DEBUG Processing 588/714 atomic regions from SNP 176361 to 176961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,995 DEBUG Processing 567/743 atomic regions from SNP 169843 to 170443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,069 DEBUG Processing 738/866 atomic regions from SNP 221216 to 221816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,120 DEBUG Processing 280/674 atomic regions from SNP 83979 to 84580 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,145 DEBUG Processing 672/757 atomic regions from SNP 201514 to 202114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,179 DEBUG Processing 11/732 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,235 DEBUG Processing 589/714 atomic regions from SNP 176661 to 177261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,240 DEBUG Processing 568/743 atomic regions from SNP 170143 to 170743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,335 DEBUG Processing 739/866 atomic regions from SNP 221516 to 222116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,368 DEBUG Processing 281/674 atomic regions from SNP 84280 to 84881 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,395 DEBUG Processing 673/757 atomic regions from SNP 201814 to 202414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,419 DEBUG Processing 12/732 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,473 DEBUG Processing 590/714 atomic regions from SNP 176961 to 177561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,478 DEBUG Processing 569/743 atomic regions from SNP 170443 to 171043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,599 DEBUG Processing 282/674 atomic regions from SNP 84581 to 85182 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,603 DEBUG Processing 740/866 atomic regions from SNP 221816 to 222416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,644 DEBUG Processing 674/757 atomic regions from SNP 202114 to 202714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,662 DEBUG Processing 13/732 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,713 DEBUG Processing 570/743 atomic regions from SNP 170743 to 171343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,730 DEBUG Processing 591/714 atomic regions from SNP 177261 to 177861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,834 DEBUG Processing 283/674 atomic regions from SNP 84882 to 85483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,880 DEBUG Processing 741/866 atomic regions from SNP 222116 to 222716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,898 DEBUG Processing 675/757 atomic regions from SNP 202414 to 203014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,907 DEBUG Processing 14/732 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,956 DEBUG Processing 571/743 atomic regions from SNP 171043 to 171643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,995 DEBUG Processing 592/714 atomic regions from SNP 177561 to 178161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,062 DEBUG Processing 284/674 atomic regions from SNP 85183 to 85784 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,144 DEBUG Processing 15/732 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,145 DEBUG Processing 676/757 atomic regions from SNP 202714 to 203314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,149 DEBUG Processing 742/866 atomic regions from SNP 222416 to 223016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,191 DEBUG Processing 572/743 atomic regions from SNP 171343 to 171943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,253 DEBUG Processing 593/714 atomic regions from SNP 177861 to 178461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,289 DEBUG Processing 285/674 atomic regions from SNP 85484 to 86085 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,384 DEBUG Processing 16/732 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,409 DEBUG Processing 677/757 atomic regions from SNP 203014 to 203614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,430 DEBUG Processing 573/743 atomic regions from SNP 171643 to 172243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,430 DEBUG Processing 743/866 atomic regions from SNP 222716 to 223316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,515 DEBUG Processing 594/714 atomic regions from SNP 178161 to 178761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,526 DEBUG Processing 286/674 atomic regions from SNP 85785 to 86386 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,622 DEBUG Processing 17/732 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,668 DEBUG Processing 574/743 atomic regions from SNP 171943 to 172543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,673 DEBUG Processing 678/757 atomic regions from SNP 203314 to 203914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,705 DEBUG Processing 744/866 atomic regions from SNP 223016 to 223616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,759 DEBUG Processing 287/674 atomic regions from SNP 86086 to 86687 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,792 DEBUG Processing 595/714 atomic regions from SNP 178461 to 179061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,856 DEBUG Processing 18/732 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,901 DEBUG Processing 575/743 atomic regions from SNP 172243 to 172843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,927 DEBUG Processing 679/757 atomic regions from SNP 203614 to 204214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,957 DEBUG Processing 745/866 atomic regions from SNP 223316 to 223916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,991 DEBUG Processing 288/674 atomic regions from SNP 86387 to 86988 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,055 DEBUG Processing 596/714 atomic regions from SNP 178761 to 179361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,092 DEBUG Processing 19/732 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,138 DEBUG Processing 576/743 atomic regions from SNP 172543 to 173143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,168 DEBUG Processing 680/757 atomic regions from SNP 203914 to 204514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,216 DEBUG Processing 746/866 atomic regions from SNP 223616 to 224216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,228 DEBUG Processing 289/674 atomic regions from SNP 86688 to 87289 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,320 DEBUG Processing 597/714 atomic regions from SNP 179061 to 179661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,332 DEBUG Processing 20/732 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,374 DEBUG Processing 577/743 atomic regions from SNP 172843 to 173443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,420 DEBUG Processing 681/757 atomic regions from SNP 204214 to 204814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,453 DEBUG Processing 290/674 atomic regions from SNP 86989 to 87590 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,468 DEBUG Processing 747/866 atomic regions from SNP 223916 to 224516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,572 DEBUG Processing 21/732 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,587 DEBUG Processing 598/714 atomic regions from SNP 179361 to 179961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,617 DEBUG Processing 578/743 atomic regions from SNP 173143 to 173743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,677 DEBUG Processing 291/674 atomic regions from SNP 87290 to 87891 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,681 DEBUG Processing 682/757 atomic regions from SNP 204514 to 205114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,720 DEBUG Processing 748/866 atomic regions from SNP 224216 to 224816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,812 DEBUG Processing 22/732 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,851 DEBUG Processing 599/714 atomic regions from SNP 179661 to 180261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,861 DEBUG Processing 579/743 atomic regions from SNP 173443 to 174043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,906 DEBUG Processing 292/674 atomic regions from SNP 87591 to 88192 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,937 DEBUG Processing 683/757 atomic regions from SNP 204814 to 205414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,971 DEBUG Processing 749/866 atomic regions from SNP 224516 to 225116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,050 DEBUG Processing 23/732 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,105 DEBUG Processing 580/743 atomic regions from SNP 173743 to 174343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,127 DEBUG Processing 600/714 atomic regions from SNP 179961 to 180561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,139 DEBUG Processing 293/674 atomic regions from SNP 87892 to 88493 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,180 DEBUG Processing 684/757 atomic regions from SNP 205114 to 205714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,220 DEBUG Processing 750/866 atomic regions from SNP 224816 to 225416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,278 DEBUG Processing 24/732 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,348 DEBUG Processing 581/743 atomic regions from SNP 174043 to 174643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,372 DEBUG Processing 294/674 atomic regions from SNP 88193 to 88794 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,399 DEBUG Processing 601/714 atomic regions from SNP 180261 to 180861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,421 DEBUG Processing 685/757 atomic regions from SNP 205414 to 206014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,473 DEBUG Processing 751/866 atomic regions from SNP 225116 to 225716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,510 DEBUG Processing 25/732 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,596 DEBUG Processing 582/743 atomic regions from SNP 174343 to 174943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,614 DEBUG Processing 295/674 atomic regions from SNP 88494 to 89095 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,670 DEBUG Processing 686/757 atomic regions from SNP 205714 to 206314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,678 DEBUG Processing 602/714 atomic regions from SNP 180561 to 181161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,725 DEBUG Processing 752/866 atomic regions from SNP 225416 to 226016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,741 DEBUG Processing 26/732 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,838 DEBUG Processing 583/743 atomic regions from SNP 174643 to 175243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,850 DEBUG Processing 296/674 atomic regions from SNP 88795 to 89396 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,916 DEBUG Processing 687/757 atomic regions from SNP 206014 to 206614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,949 DEBUG Processing 603/714 atomic regions from SNP 180861 to 181461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,972 DEBUG Processing 27/732 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,983 DEBUG Processing 753/866 atomic regions from SNP 225716 to 226316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,091 DEBUG Processing 297/674 atomic regions from SNP 89096 to 89697 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,092 DEBUG Processing 584/743 atomic regions from SNP 174943 to 175543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,159 DEBUG Processing 688/757 atomic regions from SNP 206314 to 206914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,209 DEBUG Processing 28/732 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,216 DEBUG Processing 604/714 atomic regions from SNP 181161 to 181761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,237 DEBUG Processing 754/866 atomic regions from SNP 226016 to 226616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,329 DEBUG Processing 298/674 atomic regions from SNP 89397 to 89998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,335 DEBUG Processing 585/743 atomic regions from SNP 175243 to 175843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,408 DEBUG Processing 689/757 atomic regions from SNP 206614 to 207214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,449 DEBUG Processing 29/732 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,482 DEBUG Processing 605/714 atomic regions from SNP 181461 to 182061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,493 DEBUG Processing 755/866 atomic regions from SNP 226316 to 226916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,562 DEBUG Processing 299/674 atomic regions from SNP 89698 to 90298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,578 DEBUG Processing 586/743 atomic regions from SNP 175543 to 176143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,648 DEBUG Processing 690/757 atomic regions from SNP 206914 to 207514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,679 DEBUG Processing 30/732 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,747 DEBUG Processing 756/866 atomic regions from SNP 226616 to 227216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,750 DEBUG Processing 606/714 atomic regions from SNP 181761 to 182361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,805 DEBUG Processing 300/674 atomic regions from SNP 89998 to 90598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,824 DEBUG Processing 587/743 atomic regions from SNP 175843 to 176443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,894 DEBUG Processing 691/757 atomic regions from SNP 207214 to 207814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,909 DEBUG Processing 31/732 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,002 DEBUG Processing 757/866 atomic regions from SNP 226916 to 227516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,019 DEBUG Processing 607/714 atomic regions from SNP 182061 to 182661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,056 DEBUG Processing 301/674 atomic regions from SNP 90298 to 90898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,075 DEBUG Processing 588/743 atomic regions from SNP 176143 to 176743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,137 DEBUG Processing 692/757 atomic regions from SNP 207514 to 208114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,140 DEBUG Processing 32/732 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,253 DEBUG Processing 758/866 atomic regions from SNP 227216 to 227816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,264 DEBUG Processing 608/714 atomic regions from SNP 182361 to 182961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,305 DEBUG Processing 302/674 atomic regions from SNP 90598 to 91198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,329 DEBUG Processing 589/743 atomic regions from SNP 176443 to 177043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,375 DEBUG Processing 33/732 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,384 DEBUG Processing 693/757 atomic regions from SNP 207814 to 208414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,498 DEBUG Processing 759/866 atomic regions from SNP 227516 to 228116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,513 DEBUG Processing 609/714 atomic regions from SNP 182661 to 183261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,548 DEBUG Processing 303/674 atomic regions from SNP 90898 to 91498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,575 DEBUG Processing 590/743 atomic regions from SNP 176743 to 177343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,612 DEBUG Processing 34/732 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,626 DEBUG Processing 694/757 atomic regions from SNP 208114 to 208714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,738 DEBUG Processing 760/866 atomic regions from SNP 227816 to 228416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,764 DEBUG Processing 610/714 atomic regions from SNP 182961 to 183561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,816 DEBUG Processing 304/674 atomic regions from SNP 91198 to 91798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,824 DEBUG Processing 591/743 atomic regions from SNP 177043 to 177643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,851 DEBUG Processing 35/732 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,876 DEBUG Processing 695/757 atomic regions from SNP 208414 to 209014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,978 DEBUG Processing 761/866 atomic regions from SNP 228116 to 228716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,015 DEBUG Processing 611/714 atomic regions from SNP 183261 to 183861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,056 DEBUG Processing 305/674 atomic regions from SNP 91498 to 92098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,082 DEBUG Processing 592/743 atomic regions from SNP 177343 to 177943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,092 DEBUG Processing 36/732 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,122 DEBUG Processing 696/757 atomic regions from SNP 208714 to 209314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,219 DEBUG Processing 762/866 atomic regions from SNP 228416 to 229016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,262 DEBUG Processing 612/714 atomic regions from SNP 183561 to 184161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,292 DEBUG Processing 306/674 atomic regions from SNP 91798 to 92398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,332 DEBUG Processing 37/732 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,343 DEBUG Processing 593/743 atomic regions from SNP 177643 to 178243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,368 DEBUG Processing 697/757 atomic regions from SNP 209014 to 209614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,459 DEBUG Processing 763/866 atomic regions from SNP 228716 to 229316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,496 DEBUG Processing 613/714 atomic regions from SNP 183861 to 184461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,527 DEBUG Processing 307/674 atomic regions from SNP 92098 to 92698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,572 DEBUG Processing 38/732 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,586 DEBUG Processing 594/743 atomic regions from SNP 177943 to 178543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,613 DEBUG Processing 698/757 atomic regions from SNP 209314 to 209914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,714 DEBUG Processing 764/866 atomic regions from SNP 229016 to 229616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,723 DEBUG Processing 614/714 atomic regions from SNP 184161 to 184761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,767 DEBUG Processing 308/674 atomic regions from SNP 92398 to 92998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,812 DEBUG Processing 39/732 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,829 DEBUG Processing 595/743 atomic regions from SNP 178243 to 178843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,857 DEBUG Processing 699/757 atomic regions from SNP 209614 to 210214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,951 DEBUG Processing 615/714 atomic regions from SNP 184461 to 185061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,956 DEBUG Processing 765/866 atomic regions from SNP 229316 to 229916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,007 DEBUG Processing 309/674 atomic regions from SNP 92698 to 93298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,057 DEBUG Processing 40/732 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,092 DEBUG Processing 596/743 atomic regions from SNP 178543 to 179143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,103 DEBUG Processing 700/757 atomic regions from SNP 209914 to 210514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,183 DEBUG Processing 616/714 atomic regions from SNP 184761 to 185361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,199 DEBUG Processing 766/866 atomic regions from SNP 229616 to 230216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,240 DEBUG Processing 310/674 atomic regions from SNP 92998 to 93598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,297 DEBUG Processing 41/732 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,349 DEBUG Processing 701/757 atomic regions from SNP 210214 to 210814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,378 DEBUG Processing 597/743 atomic regions from SNP 178843 to 179443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,412 DEBUG Processing 617/714 atomic regions from SNP 185061 to 185661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,440 DEBUG Processing 767/866 atomic regions from SNP 229916 to 230516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,474 DEBUG Processing 311/674 atomic regions from SNP 93298 to 93898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,535 DEBUG Processing 42/732 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,599 DEBUG Processing 702/757 atomic regions from SNP 210514 to 211114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,646 DEBUG Processing 598/743 atomic regions from SNP 179143 to 179743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,649 DEBUG Processing 618/714 atomic regions from SNP 185361 to 185961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,688 DEBUG Processing 768/866 atomic regions from SNP 230216 to 230816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,713 DEBUG Processing 312/674 atomic regions from SNP 93598 to 94198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,766 DEBUG Processing 43/732 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,841 DEBUG Processing 703/757 atomic regions from SNP 210814 to 211414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,884 DEBUG Processing 619/714 atomic regions from SNP 185661 to 186261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,903 DEBUG Processing 599/743 atomic regions from SNP 179443 to 180043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,931 DEBUG Processing 769/866 atomic regions from SNP 230516 to 231116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,951 DEBUG Processing 313/674 atomic regions from SNP 93898 to 94498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,992 DEBUG Processing 44/732 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,081 DEBUG Processing 704/757 atomic regions from SNP 211114 to 211714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,119 DEBUG Processing 620/714 atomic regions from SNP 185961 to 186561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,165 DEBUG Processing 600/743 atomic regions from SNP 179743 to 180343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,176 DEBUG Processing 770/866 atomic regions from SNP 230816 to 231416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,189 DEBUG Processing 314/674 atomic regions from SNP 94198 to 94798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,215 DEBUG Processing 45/732 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,321 DEBUG Processing 705/757 atomic regions from SNP 211414 to 212014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,353 DEBUG Processing 621/714 atomic regions from SNP 186261 to 186861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,415 DEBUG Processing 601/743 atomic regions from SNP 180043 to 180643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,423 DEBUG Processing 771/866 atomic regions from SNP 231116 to 231716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,425 DEBUG Processing 315/674 atomic regions from SNP 94498 to 95098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,442 DEBUG Processing 46/732 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,560 DEBUG Processing 706/757 atomic regions from SNP 211714 to 212314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,590 DEBUG Processing 622/714 atomic regions from SNP 186561 to 187161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,651 DEBUG Processing 316/674 atomic regions from SNP 94798 to 95398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,666 DEBUG Processing 602/743 atomic regions from SNP 180343 to 180943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,674 DEBUG Processing 772/866 atomic regions from SNP 231416 to 232016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,674 DEBUG Processing 47/732 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,802 DEBUG Processing 707/757 atomic regions from SNP 212014 to 212614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,830 DEBUG Processing 623/714 atomic regions from SNP 186861 to 187461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,899 DEBUG Processing 317/674 atomic regions from SNP 95098 to 95698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,913 DEBUG Processing 48/732 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,922 DEBUG Processing 603/743 atomic regions from SNP 180643 to 181243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,931 DEBUG Processing 773/866 atomic regions from SNP 231716 to 232316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,044 DEBUG Processing 708/757 atomic regions from SNP 212314 to 212914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,082 DEBUG Processing 624/714 atomic regions from SNP 187161 to 187761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,146 DEBUG Processing 318/674 atomic regions from SNP 95398 to 95998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,149 DEBUG Processing 49/732 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,182 DEBUG Processing 604/743 atomic regions from SNP 180943 to 181543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,188 DEBUG Processing 774/866 atomic regions from SNP 232016 to 232616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,287 DEBUG Processing 709/757 atomic regions from SNP 212614 to 213214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,358 DEBUG Processing 625/714 atomic regions from SNP 187461 to 188061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,385 DEBUG Processing 50/732 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,392 DEBUG Processing 319/674 atomic regions from SNP 95698 to 96298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,429 DEBUG Processing 605/743 atomic regions from SNP 181243 to 181843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,441 DEBUG Processing 775/866 atomic regions from SNP 232316 to 232916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,530 DEBUG Processing 710/757 atomic regions from SNP 212914 to 213514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,607 DEBUG Processing 626/714 atomic regions from SNP 187761 to 188361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,618 DEBUG Processing 51/732 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,623 DEBUG Processing 320/674 atomic regions from SNP 95998 to 96598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,674 DEBUG Processing 606/743 atomic regions from SNP 181543 to 182143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,702 DEBUG Processing 776/866 atomic regions from SNP 232616 to 233216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,772 DEBUG Processing 711/757 atomic regions from SNP 213214 to 213814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,845 DEBUG Processing 627/714 atomic regions from SNP 188061 to 188661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,850 DEBUG Processing 321/674 atomic regions from SNP 96298 to 96898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,850 DEBUG Processing 52/732 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,924 DEBUG Processing 607/743 atomic regions from SNP 181843 to 182443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,969 DEBUG Processing 777/866 atomic regions from SNP 232916 to 233516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,025 DEBUG Processing 712/757 atomic regions from SNP 213514 to 214114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,081 DEBUG Processing 53/732 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,083 DEBUG Processing 628/714 atomic regions from SNP 188361 to 188961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,090 DEBUG Processing 322/674 atomic regions from SNP 96598 to 97198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,175 DEBUG Processing 608/743 atomic regions from SNP 182143 to 182743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,247 DEBUG Processing 778/866 atomic regions from SNP 233216 to 233816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,282 DEBUG Processing 713/757 atomic regions from SNP 213814 to 214414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,321 DEBUG Processing 54/732 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,323 DEBUG Processing 629/714 atomic regions from SNP 188661 to 189261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,334 DEBUG Processing 323/674 atomic regions from SNP 96898 to 97498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,431 DEBUG Processing 609/743 atomic regions from SNP 182443 to 183043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,519 DEBUG Processing 779/866 atomic regions from SNP 233516 to 234116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,536 DEBUG Processing 714/757 atomic regions from SNP 214114 to 214714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,563 DEBUG Processing 55/732 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,569 DEBUG Processing 630/714 atomic regions from SNP 188961 to 189561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,576 DEBUG Processing 324/674 atomic regions from SNP 97198 to 97798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,689 DEBUG Processing 610/743 atomic regions from SNP 182743 to 183343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,787 DEBUG Processing 715/757 atomic regions from SNP 214414 to 215014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,798 DEBUG Processing 780/866 atomic regions from SNP 233816 to 234416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,806 DEBUG Processing 56/732 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,820 DEBUG Processing 631/714 atomic regions from SNP 189261 to 189861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,832 DEBUG Processing 325/674 atomic regions from SNP 97498 to 98098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,941 DEBUG Processing 611/743 atomic regions from SNP 183043 to 183643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,051 DEBUG Processing 716/757 atomic regions from SNP 214714 to 215314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,059 DEBUG Processing 57/732 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,088 DEBUG Processing 781/866 atomic regions from SNP 234116 to 234716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,089 DEBUG Processing 632/714 atomic regions from SNP 189561 to 190161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,098 DEBUG Processing 326/674 atomic regions from SNP 97798 to 98398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,186 DEBUG Processing 612/743 atomic regions from SNP 183343 to 183943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,302 DEBUG Processing 58/732 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,307 DEBUG Processing 717/757 atomic regions from SNP 215014 to 215614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,339 DEBUG Processing 633/714 atomic regions from SNP 189861 to 190461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,357 DEBUG Processing 782/866 atomic regions from SNP 234416 to 235016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,362 DEBUG Processing 327/674 atomic regions from SNP 98098 to 98698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,427 DEBUG Processing 613/743 atomic regions from SNP 183643 to 184243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,537 DEBUG Processing 59/732 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,553 DEBUG Processing 718/757 atomic regions from SNP 215314 to 215914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,587 DEBUG Processing 634/714 atomic regions from SNP 190161 to 190761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,617 DEBUG Processing 328/674 atomic regions from SNP 98398 to 98998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,624 DEBUG Processing 783/866 atomic regions from SNP 234716 to 235316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,672 DEBUG Processing 614/743 atomic regions from SNP 183943 to 184543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,765 DEBUG Processing 60/732 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,794 DEBUG Processing 719/757 atomic regions from SNP 215614 to 216214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,832 DEBUG Processing 635/714 atomic regions from SNP 190461 to 191061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,871 DEBUG Processing 329/674 atomic regions from SNP 98698 to 99298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,890 DEBUG Processing 784/866 atomic regions from SNP 235016 to 235616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,922 DEBUG Processing 615/743 atomic regions from SNP 184243 to 184843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,997 DEBUG Processing 61/732 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,036 DEBUG Processing 720/757 atomic regions from SNP 215914 to 216514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,091 DEBUG Processing 636/714 atomic regions from SNP 190761 to 191361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,123 DEBUG Processing 330/674 atomic regions from SNP 98998 to 99598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,150 DEBUG Processing 785/866 atomic regions from SNP 235316 to 235916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,163 DEBUG Processing 616/743 atomic regions from SNP 184543 to 185143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,234 DEBUG Processing 62/732 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,282 DEBUG Processing 721/757 atomic regions from SNP 216214 to 216814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,360 DEBUG Processing 637/714 atomic regions from SNP 191061 to 191661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,369 DEBUG Processing 331/674 atomic regions from SNP 99298 to 99898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,412 DEBUG Processing 786/866 atomic regions from SNP 235616 to 236216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,414 DEBUG Processing 617/743 atomic regions from SNP 184843 to 185443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,466 DEBUG Processing 63/732 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,523 DEBUG Processing 722/757 atomic regions from SNP 216514 to 217114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,595 DEBUG Processing 332/674 atomic regions from SNP 99598 to 100198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,616 DEBUG Processing 638/714 atomic regions from SNP 191361 to 191961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,648 DEBUG Processing 618/743 atomic regions from SNP 185143 to 185743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,664 DEBUG Processing 787/866 atomic regions from SNP 235916 to 236516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,702 DEBUG Processing 64/732 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,762 DEBUG Processing 723/757 atomic regions from SNP 216814 to 217414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,822 DEBUG Processing 333/674 atomic regions from SNP 99898 to 100498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,861 DEBUG Processing 639/714 atomic regions from SNP 191661 to 192261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,889 DEBUG Processing 619/743 atomic regions from SNP 185443 to 186043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,934 DEBUG Processing 65/732 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,937 DEBUG Processing 788/866 atomic regions from SNP 236216 to 236816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,008 DEBUG Processing 724/757 atomic regions from SNP 217114 to 217714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,052 DEBUG Processing 334/674 atomic regions from SNP 100198 to 100798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,122 DEBUG Processing 640/714 atomic regions from SNP 191961 to 192561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,127 DEBUG Processing 620/743 atomic regions from SNP 185743 to 186343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,170 DEBUG Processing 66/732 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,192 DEBUG Processing 789/866 atomic regions from SNP 236516 to 237116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,246 DEBUG Processing 725/757 atomic regions from SNP 217414 to 218014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,278 DEBUG Processing 335/674 atomic regions from SNP 100498 to 101098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,366 DEBUG Processing 621/743 atomic regions from SNP 186043 to 186643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,369 DEBUG Processing 641/714 atomic regions from SNP 192261 to 192861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,415 DEBUG Processing 67/732 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,453 DEBUG Processing 790/866 atomic regions from SNP 236816 to 237416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,484 DEBUG Processing 726/757 atomic regions from SNP 217714 to 218314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,499 DEBUG Processing 336/674 atomic regions from SNP 100798 to 101398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,607 DEBUG Processing 622/743 atomic regions from SNP 186343 to 186943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,627 DEBUG Processing 642/714 atomic regions from SNP 192561 to 193161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,659 DEBUG Processing 68/732 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,721 DEBUG Processing 791/866 atomic regions from SNP 237116 to 237716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,724 DEBUG Processing 727/757 atomic regions from SNP 218014 to 218614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,736 DEBUG Processing 337/674 atomic regions from SNP 101098 to 101698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,845 DEBUG Processing 623/743 atomic regions from SNP 186643 to 187243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,878 DEBUG Processing 643/714 atomic regions from SNP 192861 to 193461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,903 DEBUG Processing 69/732 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,968 DEBUG Processing 728/757 atomic regions from SNP 218314 to 218914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,976 DEBUG Processing 338/674 atomic regions from SNP 101398 to 101998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,976 DEBUG Processing 792/866 atomic regions from SNP 237416 to 238016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,088 DEBUG Processing 624/743 atomic regions from SNP 186943 to 187543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,126 DEBUG Processing 644/714 atomic regions from SNP 193161 to 193761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,147 DEBUG Processing 70/732 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,206 DEBUG Processing 339/674 atomic regions from SNP 101698 to 102298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,214 DEBUG Processing 729/757 atomic regions from SNP 218614 to 219214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,237 DEBUG Processing 793/866 atomic regions from SNP 237716 to 238316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,323 DEBUG Processing 625/743 atomic regions from SNP 187243 to 187843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,359 DEBUG Processing 645/714 atomic regions from SNP 193461 to 194061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,381 DEBUG Processing 71/732 atomic regions from SNP 21070 to 21671 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,436 DEBUG Processing 340/674 atomic regions from SNP 101998 to 102598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,457 DEBUG Processing 730/757 atomic regions from SNP 218914 to 219514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,496 DEBUG Processing 794/866 atomic regions from SNP 238016 to 238616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,557 DEBUG Processing 626/743 atomic regions from SNP 187543 to 188143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,591 DEBUG Processing 646/714 atomic regions from SNP 193761 to 194361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,611 DEBUG Processing 72/732 atomic regions from SNP 21371 to 21972 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,654 DEBUG Processing 341/674 atomic regions from SNP 102298 to 102898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,698 DEBUG Processing 731/757 atomic regions from SNP 219214 to 219814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,754 DEBUG Processing 795/866 atomic regions from SNP 238316 to 238916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,795 DEBUG Processing 627/743 atomic regions from SNP 187843 to 188443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,830 DEBUG Processing 647/714 atomic regions from SNP 194061 to 194661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,839 DEBUG Processing 73/732 atomic regions from SNP 21672 to 22273 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,875 DEBUG Processing 342/674 atomic regions from SNP 102598 to 103198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,937 DEBUG Processing 732/757 atomic regions from SNP 219514 to 220114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,012 DEBUG Processing 796/866 atomic regions from SNP 238616 to 239216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,039 DEBUG Processing 628/743 atomic regions from SNP 188143 to 188743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,076 DEBUG Processing 648/714 atomic regions from SNP 194361 to 194961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,077 DEBUG Processing 74/732 atomic regions from SNP 21973 to 22574 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,103 DEBUG Processing 343/674 atomic regions from SNP 102898 to 103498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,182 DEBUG Processing 733/757 atomic regions from SNP 219814 to 220414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,274 DEBUG Processing 797/866 atomic regions from SNP 238916 to 239516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,282 DEBUG Processing 629/743 atomic regions from SNP 188443 to 189043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,312 DEBUG Processing 75/732 atomic regions from SNP 22274 to 22875 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,322 DEBUG Processing 649/714 atomic regions from SNP 194661 to 195261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,330 DEBUG Processing 344/674 atomic regions from SNP 103198 to 103798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,421 DEBUG Processing 734/757 atomic regions from SNP 220114 to 220714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,532 DEBUG Processing 798/866 atomic regions from SNP 239216 to 239816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,542 DEBUG Processing 630/743 atomic regions from SNP 188743 to 189343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,559 DEBUG Processing 76/732 atomic regions from SNP 22575 to 23176 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,566 DEBUG Processing 650/714 atomic regions from SNP 194961 to 195561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,573 DEBUG Processing 345/674 atomic regions from SNP 103498 to 104098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,660 DEBUG Processing 735/757 atomic regions from SNP 220414 to 221014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,787 DEBUG Processing 799/866 atomic regions from SNP 239516 to 240116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,795 DEBUG Processing 77/732 atomic regions from SNP 22876 to 23477 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,796 DEBUG Processing 631/743 atomic regions from SNP 189043 to 189643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,804 DEBUG Processing 346/674 atomic regions from SNP 103798 to 104398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,813 DEBUG Processing 651/714 atomic regions from SNP 195261 to 195861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,896 DEBUG Processing 736/757 atomic regions from SNP 220714 to 221314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,033 DEBUG Processing 78/732 atomic regions from SNP 23177 to 23778 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,035 DEBUG Processing 347/674 atomic regions from SNP 104098 to 104698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,041 DEBUG Processing 800/866 atomic regions from SNP 239816 to 240416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,050 DEBUG Processing 632/743 atomic regions from SNP 189343 to 189943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,058 DEBUG Processing 652/714 atomic regions from SNP 195561 to 196161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,149 DEBUG Processing 737/757 atomic regions from SNP 221014 to 221614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,259 DEBUG Processing 348/674 atomic regions from SNP 104398 to 104998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,263 DEBUG Processing 79/732 atomic regions from SNP 23478 to 24079 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,301 DEBUG Processing 801/866 atomic regions from SNP 240116 to 240716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,303 DEBUG Processing 653/714 atomic regions from SNP 195861 to 196461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,303 DEBUG Processing 633/743 atomic regions from SNP 189643 to 190243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,417 DEBUG Processing 738/757 atomic regions from SNP 221314 to 221914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,488 DEBUG Processing 349/674 atomic regions from SNP 104698 to 105298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,499 DEBUG Processing 80/732 atomic regions from SNP 23779 to 24380 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,546 DEBUG Processing 654/714 atomic regions from SNP 196161 to 196761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,553 DEBUG Processing 634/743 atomic regions from SNP 189943 to 190543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,560 DEBUG Processing 802/866 atomic regions from SNP 240416 to 241016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,692 DEBUG Processing 739/757 atomic regions from SNP 221614 to 222214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,718 DEBUG Processing 350/674 atomic regions from SNP 104998 to 105598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,735 DEBUG Processing 81/732 atomic regions from SNP 24080 to 24681 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,792 DEBUG Processing 655/714 atomic regions from SNP 196461 to 197061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,813 DEBUG Processing 635/743 atomic regions from SNP 190243 to 190843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,815 DEBUG Processing 803/866 atomic regions from SNP 240716 to 241316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,962 DEBUG Processing 351/674 atomic regions from SNP 105298 to 105898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,962 DEBUG Processing 740/757 atomic regions from SNP 221914 to 222514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,975 DEBUG Processing 82/732 atomic regions from SNP 24381 to 24982 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,046 DEBUG Processing 656/714 atomic regions from SNP 196761 to 197361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,065 DEBUG Processing 636/743 atomic regions from SNP 190543 to 191143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,066 DEBUG Processing 804/866 atomic regions from SNP 241016 to 241616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,210 DEBUG Processing 352/674 atomic regions from SNP 105598 to 106198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,215 DEBUG Processing 83/732 atomic regions from SNP 24682 to 25283 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,234 DEBUG Processing 741/757 atomic regions from SNP 222214 to 222814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,295 DEBUG Processing 657/714 atomic regions from SNP 197061 to 197661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,320 DEBUG Processing 805/866 atomic regions from SNP 241316 to 241916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,327 DEBUG Processing 637/743 atomic regions from SNP 190843 to 191443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,450 DEBUG Processing 84/732 atomic regions from SNP 24983 to 25584 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,455 DEBUG Processing 353/674 atomic regions from SNP 105898 to 106498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,508 DEBUG Processing 742/757 atomic regions from SNP 222514 to 223114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,543 DEBUG Processing 658/714 atomic regions from SNP 197361 to 197961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,576 DEBUG Processing 806/866 atomic regions from SNP 241616 to 242216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,585 DEBUG Processing 638/743 atomic regions from SNP 191143 to 191743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,684 DEBUG Processing 85/732 atomic regions from SNP 25284 to 25885 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,706 DEBUG Processing 354/674 atomic regions from SNP 106198 to 106798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,767 DEBUG Processing 743/757 atomic regions from SNP 222814 to 223414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,783 DEBUG Processing 659/714 atomic regions from SNP 197661 to 198261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,828 DEBUG Processing 807/866 atomic regions from SNP 241916 to 242516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,830 DEBUG Processing 639/743 atomic regions from SNP 191443 to 192043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,919 DEBUG Processing 86/732 atomic regions from SNP 25585 to 26186 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,942 DEBUG Processing 355/674 atomic regions from SNP 106498 to 107098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,020 DEBUG Processing 744/757 atomic regions from SNP 223114 to 223714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,027 DEBUG Processing 660/714 atomic regions from SNP 197961 to 198561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,069 DEBUG Processing 640/743 atomic regions from SNP 191743 to 192343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,102 DEBUG Processing 808/866 atomic regions from SNP 242216 to 242816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,153 DEBUG Processing 87/732 atomic regions from SNP 25886 to 26487 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,191 DEBUG Processing 356/674 atomic regions from SNP 106798 to 107398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,273 DEBUG Processing 661/714 atomic regions from SNP 198261 to 198861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,291 DEBUG Processing 745/757 atomic regions from SNP 223414 to 224014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,305 DEBUG Processing 641/743 atomic regions from SNP 192043 to 192643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,358 DEBUG Processing 809/866 atomic regions from SNP 242516 to 243116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,390 DEBUG Processing 88/732 atomic regions from SNP 26187 to 26788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,445 DEBUG Processing 357/674 atomic regions from SNP 107098 to 107698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,505 DEBUG Processing 662/714 atomic regions from SNP 198561 to 199161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,540 DEBUG Processing 642/743 atomic regions from SNP 192343 to 192943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,558 DEBUG Processing 746/757 atomic regions from SNP 223714 to 224314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,628 DEBUG Processing 89/732 atomic regions from SNP 26488 to 27089 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,628 DEBUG Processing 810/866 atomic regions from SNP 242816 to 243416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,682 DEBUG Processing 358/674 atomic regions from SNP 107398 to 107998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,736 DEBUG Processing 663/714 atomic regions from SNP 198861 to 199461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,778 DEBUG Processing 643/743 atomic regions from SNP 192643 to 193243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,835 DEBUG Processing 747/757 atomic regions from SNP 224014 to 224614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,870 DEBUG Processing 90/732 atomic regions from SNP 26789 to 27390 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,890 DEBUG Processing 811/866 atomic regions from SNP 243116 to 243716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,916 DEBUG Processing 359/674 atomic regions from SNP 107698 to 108298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,973 DEBUG Processing 664/714 atomic regions from SNP 199161 to 199761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,006 DEBUG Processing 644/743 atomic regions from SNP 192943 to 193543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,099 DEBUG Processing 91/732 atomic regions from SNP 27090 to 27691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,106 DEBUG Processing 748/757 atomic regions from SNP 224314 to 224914 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,147 DEBUG Processing 360/674 atomic regions from SNP 107998 to 108598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,147 DEBUG Processing 812/866 atomic regions from SNP 243416 to 244016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,208 DEBUG Processing 665/714 atomic regions from SNP 199461 to 200061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,235 DEBUG Processing 645/743 atomic regions from SNP 193243 to 193843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,330 DEBUG Processing 92/732 atomic regions from SNP 27391 to 27992 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,373 DEBUG Processing 749/757 atomic regions from SNP 224614 to 225214 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,379 DEBUG Processing 361/674 atomic regions from SNP 108298 to 108898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,405 DEBUG Processing 813/866 atomic regions from SNP 243716 to 244316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,451 DEBUG Processing 666/714 atomic regions from SNP 199761 to 200361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,470 DEBUG Processing 646/743 atomic regions from SNP 193543 to 194143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,555 DEBUG Processing 93/732 atomic regions from SNP 27692 to 28293 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,603 DEBUG Processing 362/674 atomic regions from SNP 108598 to 109198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,630 DEBUG Processing 750/757 atomic regions from SNP 224914 to 225514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,667 DEBUG Processing 814/866 atomic regions from SNP 244016 to 244616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,696 DEBUG Processing 667/714 atomic regions from SNP 200061 to 200661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,707 DEBUG Processing 647/743 atomic regions from SNP 193843 to 194443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,776 DEBUG Processing 94/732 atomic regions from SNP 27993 to 28594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,822 DEBUG Processing 363/674 atomic regions from SNP 108898 to 109498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,869 DEBUG Processing 751/757 atomic regions from SNP 225214 to 225814 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,927 DEBUG Processing 815/866 atomic regions from SNP 244316 to 244916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,942 DEBUG Processing 668/714 atomic regions from SNP 200361 to 200961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,951 DEBUG Processing 648/743 atomic regions from SNP 194143 to 194743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,003 DEBUG Processing 95/732 atomic regions from SNP 28294 to 28895 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,038 DEBUG Processing 364/674 atomic regions from SNP 109198 to 109798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,112 DEBUG Processing 752/757 atomic regions from SNP 225514 to 226114 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,189 DEBUG Processing 669/714 atomic regions from SNP 200661 to 201261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,190 DEBUG Processing 816/866 atomic regions from SNP 244616 to 245216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,195 DEBUG Processing 649/743 atomic regions from SNP 194443 to 195043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,239 DEBUG Processing 96/732 atomic regions from SNP 28595 to 29196 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,261 DEBUG Processing 365/674 atomic regions from SNP 109498 to 110098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,354 DEBUG Processing 753/757 atomic regions from SNP 225814 to 226414 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,437 DEBUG Processing 670/714 atomic regions from SNP 200961 to 201561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,439 DEBUG Processing 650/743 atomic regions from SNP 194743 to 195343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,452 DEBUG Processing 817/866 atomic regions from SNP 244916 to 245516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,488 DEBUG Processing 97/732 atomic regions from SNP 28896 to 29497 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,489 DEBUG Processing 366/674 atomic regions from SNP 109798 to 110398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,590 DEBUG Processing 754/757 atomic regions from SNP 226114 to 226714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,686 DEBUG Processing 671/714 atomic regions from SNP 201261 to 201861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,686 DEBUG Processing 651/743 atomic regions from SNP 195043 to 195643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,713 DEBUG Processing 818/866 atomic regions from SNP 245216 to 245816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,723 DEBUG Processing 367/674 atomic regions from SNP 110098 to 110698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,729 DEBUG Processing 98/732 atomic regions from SNP 29197 to 29798 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,830 DEBUG Processing 755/757 atomic regions from SNP 226414 to 227014 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,934 DEBUG Processing 672/714 atomic regions from SNP 201561 to 202161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,934 DEBUG Processing 652/743 atomic regions from SNP 195343 to 195943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,961 DEBUG Processing 368/674 atomic regions from SNP 110398 to 110998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,972 DEBUG Processing 99/732 atomic regions from SNP 29498 to 30099 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,982 DEBUG Processing 819/866 atomic regions from SNP 245516 to 246116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,080 DEBUG Processing 756/757 atomic regions from SNP 226714 to 227314 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,182 DEBUG Processing 653/743 atomic regions from SNP 195643 to 196243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,184 DEBUG Processing 673/714 atomic regions from SNP 201861 to 202461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,200 DEBUG Processing 369/674 atomic regions from SNP 110698 to 111298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,218 DEBUG Processing 100/732 atomic regions from SNP 29799 to 30400 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,247 DEBUG Processing 820/866 atomic regions from SNP 245816 to 246416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,322 DEBUG Processing 757/757 atomic regions from SNP 227014 to 227614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,430 DEBUG Processing 654/743 atomic regions from SNP 195943 to 196543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,434 DEBUG Processing 674/714 atomic regions from SNP 202161 to 202761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,437 DEBUG Processing 370/674 atomic regions from SNP 110998 to 111598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,463 DEBUG Unique SNPs positions in subchromosome 1: 227615 2025-01-31 09:52:40,468 DEBUG Processing 101/732 atomic regions from SNP 30100 to 30701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,510 DEBUG Processing 821/866 atomic regions from SNP 246116 to 246716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,671 DEBUG Processing 371/674 atomic regions from SNP 111298 to 111898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,674 DEBUG Processing 655/743 atomic regions from SNP 196243 to 196843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,682 DEBUG Processing 675/714 atomic regions from SNP 202461 to 203061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,732 DEBUG Processing 102/732 atomic regions from SNP 30401 to 31002 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,763 DEBUG Processing 822/866 atomic regions from SNP 246416 to 247016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,902 DEBUG Processing 372/674 atomic regions from SNP 111598 to 112198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,917 DEBUG Processing 656/743 atomic regions from SNP 196543 to 197143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,932 DEBUG Processing 676/714 atomic regions from SNP 202761 to 203361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,998 DEBUG Processing 103/732 atomic regions from SNP 30702 to 31303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,024 DEBUG Processing 823/866 atomic regions from SNP 246716 to 247316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,131 DEBUG Processing 373/674 atomic regions from SNP 111898 to 112498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,156 DEBUG Processing 657/743 atomic regions from SNP 196843 to 197443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,172 DEBUG Processing 677/714 atomic regions from SNP 203061 to 203661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,264 DEBUG Processing 104/732 atomic regions from SNP 31003 to 31604 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,277 DEBUG Processing 824/866 atomic regions from SNP 247016 to 247616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,370 DEBUG Processing 374/674 atomic regions from SNP 112198 to 112798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,392 DEBUG Processing 658/743 atomic regions from SNP 197143 to 197743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,412 DEBUG Processing 678/714 atomic regions from SNP 203361 to 203961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,530 DEBUG Processing 105/732 atomic regions from SNP 31304 to 31905 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,531 DEBUG Processing 825/866 atomic regions from SNP 247316 to 247916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,601 DEBUG Processing 375/674 atomic regions from SNP 112498 to 113098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,631 DEBUG Processing 659/743 atomic regions from SNP 197443 to 198043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,653 DEBUG Processing 679/714 atomic regions from SNP 203661 to 204261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,792 DEBUG Processing 826/866 atomic regions from SNP 247616 to 248216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,797 DEBUG Processing 106/732 atomic regions from SNP 31605 to 32206 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,835 DEBUG Processing 376/674 atomic regions from SNP 112798 to 113398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,868 DEBUG Processing 660/743 atomic regions from SNP 197743 to 198343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,891 DEBUG Processing 680/714 atomic regions from SNP 203961 to 204561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,053 DEBUG Processing 827/866 atomic regions from SNP 247916 to 248516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,066 DEBUG Processing 107/732 atomic regions from SNP 31906 to 32507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,072 DEBUG Processing 377/674 atomic regions from SNP 113098 to 113698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,108 DEBUG Processing 661/743 atomic regions from SNP 198043 to 198643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,135 DEBUG Processing 681/714 atomic regions from SNP 204261 to 204861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,303 DEBUG Processing 378/674 atomic regions from SNP 113398 to 113998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,312 DEBUG Processing 828/866 atomic regions from SNP 248216 to 248816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,329 DEBUG Processing 108/732 atomic regions from SNP 32207 to 32808 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,351 DEBUG Processing 662/743 atomic regions from SNP 198343 to 198943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,376 DEBUG Processing 682/714 atomic regions from SNP 204561 to 205161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,538 DEBUG Processing 379/674 atomic regions from SNP 113698 to 114298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,578 DEBUG Processing 829/866 atomic regions from SNP 248516 to 249116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,604 DEBUG Processing 663/743 atomic regions from SNP 198643 to 199243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,606 DEBUG Processing 109/732 atomic regions from SNP 32508 to 33109 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,639 DEBUG Processing 683/714 atomic regions from SNP 204861 to 205461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,681 DEBUG Subchromosome time: 218.92776395892724, subchromosome SNPs: 227615 2025-01-31 09:52:42,681 DEBUG Estimated BADs: [1.97, 0.66, 1.97, 0.99, 1.97, 0.99, 1.97, 3.94, 1.97, 3.94, 7.89, 1.97, 0.66, 0.99, 1.97, 0.99, 5.92, 1.97] SNP counts: [21154, 2725, 29194, 4823, 20373, 14723, 6964, 4756, 23722, 7478, 3599, 34523, 6875, 15608, 19488, 5103, 3303, 3204] SNP IDs counts: [21154, 2725, 29194, 4823, 20373, 14723, 6964, 4756, 23722, 7478, 3599, 34523, 6875, 15608, 19488, 5103, 3303, 3204] Critical gap: 613836bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 15.04Mbp, 16.67Mbp, 33.08Mbp, 35.84Mbp, 47.01Mbp, 55.58Mbp, 59.84Mbp, 62.31Mbp, 75.55Mbp, 79.67Mbp, 81.53Mbp, 100.76Mbp, 104.73Mbp, 113.46Mbp, 124.11Mbp, 126.92Mbp, 128.66Mbp, 130.69Mbp] 2025-01-31 09:52:42,681 DEBUG chr10 time: 218.928338075988 s 2025-01-31 09:52:42,759 DEBUG Processing 380/674 atomic regions from SNP 113998 to 114598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,837 DEBUG chr10: Fitting background model for 18 segments 2025-01-31 09:52:42,844 DEBUG Processing 830/866 atomic regions from SNP 248816 to 249416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,850 DEBUG Processing 664/743 atomic regions from SNP 198943 to 199543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,886 DEBUG Processing 110/732 atomic regions from SNP 32809 to 33410 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,902 DEBUG Processing 684/714 atomic regions from SNP 205161 to 205761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,979 DEBUG Processing 381/674 atomic regions from SNP 114298 to 114898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,096 DEBUG Processing 665/743 atomic regions from SNP 199243 to 199843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,104 DEBUG Processing 831/866 atomic regions from SNP 249116 to 249716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,143 DEBUG Processing 111/732 atomic regions from SNP 33110 to 33711 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,152 DEBUG Processing 685/714 atomic regions from SNP 205461 to 206061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,216 DEBUG Processing 382/674 atomic regions from SNP 114598 to 115198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,360 DEBUG Processing 666/743 atomic regions from SNP 199543 to 200143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,385 DEBUG Processing 832/866 atomic regions from SNP 249416 to 250016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,403 DEBUG Processing 686/714 atomic regions from SNP 205761 to 206361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,411 DEBUG Processing 112/732 atomic regions from SNP 33411 to 34012 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,461 DEBUG Processing 383/674 atomic regions from SNP 114898 to 115498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,639 DEBUG Processing 667/743 atomic regions from SNP 199843 to 200443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,657 DEBUG Processing 833/866 atomic regions from SNP 249716 to 250316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,669 DEBUG Processing 687/714 atomic regions from SNP 206061 to 206661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,683 DEBUG Processing 113/732 atomic regions from SNP 33712 to 34313 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,717 DEBUG Processing 384/674 atomic regions from SNP 115198 to 115798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,924 DEBUG Processing 834/866 atomic regions from SNP 250016 to 250616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,925 DEBUG Processing 668/743 atomic regions from SNP 200143 to 200743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,935 DEBUG Processing 114/732 atomic regions from SNP 34013 to 34614 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,938 DEBUG Processing 688/714 atomic regions from SNP 206361 to 206961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,962 DEBUG Processing 385/674 atomic regions from SNP 115498 to 116098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,182 DEBUG Processing 115/732 atomic regions from SNP 34314 to 34915 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,191 DEBUG Processing 835/866 atomic regions from SNP 250316 to 250916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,208 DEBUG Processing 669/743 atomic regions from SNP 200443 to 201043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,211 DEBUG Processing 386/674 atomic regions from SNP 115798 to 116398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,213 DEBUG Processing 689/714 atomic regions from SNP 206661 to 207261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,420 DEBUG Processing 116/732 atomic regions from SNP 34615 to 35216 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,457 DEBUG Processing 836/866 atomic regions from SNP 250616 to 251216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,465 DEBUG Processing 387/674 atomic regions from SNP 116098 to 116698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,498 DEBUG Processing 670/743 atomic regions from SNP 200743 to 201343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,503 DEBUG Processing 690/714 atomic regions from SNP 206961 to 207561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,650 DEBUG Processing 117/732 atomic regions from SNP 34916 to 35517 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,718 DEBUG Processing 837/866 atomic regions from SNP 250916 to 251516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,720 DEBUG Processing 388/674 atomic regions from SNP 116398 to 116998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,774 DEBUG Processing 671/743 atomic regions from SNP 201043 to 201643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,784 DEBUG Processing 691/714 atomic regions from SNP 207261 to 207861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,893 DEBUG Processing 118/732 atomic regions from SNP 35217 to 35818 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,009 DEBUG Processing 389/674 atomic regions from SNP 116698 to 117298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,020 DEBUG Processing 838/866 atomic regions from SNP 251216 to 251816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,119 DEBUG Processing 672/743 atomic regions from SNP 201343 to 201943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,144 DEBUG Processing 692/714 atomic regions from SNP 207561 to 208161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,209 DEBUG Processing 119/732 atomic regions from SNP 35518 to 36119 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,264 DEBUG Processing 390/674 atomic regions from SNP 116998 to 117598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,295 DEBUG Processing 839/866 atomic regions from SNP 251516 to 252116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,372 DEBUG Processing 673/743 atomic regions from SNP 201643 to 202243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,405 DEBUG Processing 693/714 atomic regions from SNP 207861 to 208461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,439 DEBUG Processing 120/732 atomic regions from SNP 35819 to 36420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,511 DEBUG Processing 391/674 atomic regions from SNP 117298 to 117898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,553 DEBUG Processing 840/866 atomic regions from SNP 251816 to 252416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,615 DEBUG Processing 674/743 atomic regions from SNP 201943 to 202543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,666 DEBUG Processing 694/714 atomic regions from SNP 208161 to 208761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,668 DEBUG Processing 121/732 atomic regions from SNP 36120 to 36721 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,753 DEBUG Processing 392/674 atomic regions from SNP 117598 to 118198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,825 DEBUG Processing 841/866 atomic regions from SNP 252116 to 252716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,861 DEBUG Processing 675/743 atomic regions from SNP 202243 to 202843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,897 DEBUG Processing 122/732 atomic regions from SNP 36421 to 37022 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,927 DEBUG Processing 695/714 atomic regions from SNP 208461 to 209061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,995 DEBUG Processing 393/674 atomic regions from SNP 117898 to 118498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,084 DEBUG Processing 842/866 atomic regions from SNP 252416 to 253016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,105 DEBUG Processing 676/743 atomic regions from SNP 202543 to 203143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,135 DEBUG Processing 123/732 atomic regions from SNP 36722 to 37323 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,194 DEBUG Processing 696/714 atomic regions from SNP 208761 to 209361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,241 DEBUG Processing 394/674 atomic regions from SNP 118198 to 118798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,361 DEBUG Processing 843/866 atomic regions from SNP 252716 to 253316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,362 DEBUG Processing 677/743 atomic regions from SNP 202843 to 203443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,383 DEBUG Processing 124/732 atomic regions from SNP 37023 to 37624 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,467 DEBUG Processing 697/714 atomic regions from SNP 209061 to 209661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,469 DEBUG Processing 395/674 atomic regions from SNP 118498 to 119098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,620 DEBUG Processing 678/743 atomic regions from SNP 203143 to 203743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,621 DEBUG Processing 125/732 atomic regions from SNP 37324 to 37925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,624 DEBUG Processing 844/866 atomic regions from SNP 253016 to 253616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,701 DEBUG Processing 396/674 atomic regions from SNP 118798 to 119398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,748 DEBUG Processing 698/714 atomic regions from SNP 209361 to 209961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,870 DEBUG Processing 126/732 atomic regions from SNP 37625 to 38226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,882 DEBUG Processing 679/743 atomic regions from SNP 203443 to 204043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,895 DEBUG Processing 845/866 atomic regions from SNP 253316 to 253916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,942 DEBUG Processing 397/674 atomic regions from SNP 119098 to 119698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,013 DEBUG Processing 699/714 atomic regions from SNP 209661 to 210261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,110 DEBUG Processing 127/732 atomic regions from SNP 37926 to 38527 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,131 DEBUG Processing 680/743 atomic regions from SNP 203743 to 204343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,160 DEBUG Processing 846/866 atomic regions from SNP 253616 to 254216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,177 DEBUG Processing 398/674 atomic regions from SNP 119398 to 119998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,252 DEBUG Processing 700/714 atomic regions from SNP 209961 to 210561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,348 DEBUG Processing 128/732 atomic regions from SNP 38227 to 38828 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,383 DEBUG Processing 681/743 atomic regions from SNP 204043 to 204643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,411 DEBUG Processing 399/674 atomic regions from SNP 119698 to 120298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,423 DEBUG Processing 847/866 atomic regions from SNP 253916 to 254516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,508 DEBUG Processing 701/714 atomic regions from SNP 210261 to 210861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,581 DEBUG Processing 129/732 atomic regions from SNP 38528 to 39129 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,641 DEBUG Processing 400/674 atomic regions from SNP 119998 to 120598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,642 DEBUG Processing 682/743 atomic regions from SNP 204343 to 204943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,680 DEBUG Processing 848/866 atomic regions from SNP 254216 to 254816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,766 DEBUG Processing 702/714 atomic regions from SNP 210561 to 211161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,815 DEBUG Processing 130/732 atomic regions from SNP 38829 to 39430 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,866 DEBUG Processing 401/674 atomic regions from SNP 120298 to 120898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,916 DEBUG Processing 683/743 atomic regions from SNP 204643 to 205243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,937 DEBUG Processing 849/866 atomic regions from SNP 254516 to 255116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,006 DEBUG Processing 703/714 atomic regions from SNP 210861 to 211461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,045 DEBUG Processing 131/732 atomic regions from SNP 39130 to 39731 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,088 DEBUG Processing 402/674 atomic regions from SNP 120598 to 121198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,194 DEBUG Processing 684/743 atomic regions from SNP 204943 to 205543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,199 DEBUG Processing 850/866 atomic regions from SNP 254816 to 255416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,257 DEBUG Processing 704/714 atomic regions from SNP 211161 to 211761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,281 DEBUG Processing 132/732 atomic regions from SNP 39431 to 40032 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,314 DEBUG Processing 403/674 atomic regions from SNP 120898 to 121498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,463 DEBUG Processing 851/866 atomic regions from SNP 255116 to 255716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,467 DEBUG Processing 685/743 atomic regions from SNP 205243 to 205843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,518 DEBUG Processing 133/732 atomic regions from SNP 39732 to 40333 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,518 DEBUG Processing 705/714 atomic regions from SNP 211461 to 212061 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,538 DEBUG Processing 404/674 atomic regions from SNP 121198 to 121798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,746 DEBUG Processing 686/743 atomic regions from SNP 205543 to 206143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,747 DEBUG Processing 852/866 atomic regions from SNP 255416 to 256016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,759 DEBUG Processing 134/732 atomic regions from SNP 40033 to 40634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,771 DEBUG Processing 405/674 atomic regions from SNP 121498 to 122098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,789 DEBUG Processing 706/714 atomic regions from SNP 211761 to 212361 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,000 DEBUG Processing 135/732 atomic regions from SNP 40334 to 40935 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,011 DEBUG Processing 853/866 atomic regions from SNP 255716 to 256316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,012 DEBUG Processing 406/674 atomic regions from SNP 121798 to 122398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,026 DEBUG Processing 687/743 atomic regions from SNP 205843 to 206443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,051 DEBUG Processing 707/714 atomic regions from SNP 212061 to 212661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,232 DEBUG Processing 136/732 atomic regions from SNP 40635 to 41236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,245 DEBUG Processing 407/674 atomic regions from SNP 122098 to 122698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,266 DEBUG Processing 854/866 atomic regions from SNP 256016 to 256616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,298 DEBUG Processing 708/714 atomic regions from SNP 212361 to 212961 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,302 DEBUG Processing 688/743 atomic regions from SNP 206143 to 206743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,461 DEBUG Processing 137/732 atomic regions from SNP 40936 to 41537 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,475 DEBUG Processing 408/674 atomic regions from SNP 122398 to 122998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,526 DEBUG Processing 855/866 atomic regions from SNP 256316 to 256916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,542 DEBUG Processing 709/714 atomic regions from SNP 212661 to 213261 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,586 DEBUG Processing 689/743 atomic regions from SNP 206443 to 207043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,690 DEBUG Processing 138/732 atomic regions from SNP 41237 to 41838 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,707 DEBUG Processing 409/674 atomic regions from SNP 122698 to 123298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,785 DEBUG Processing 856/866 atomic regions from SNP 256616 to 257216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,794 DEBUG Processing 710/714 atomic regions from SNP 212961 to 213561 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,863 DEBUG Processing 690/743 atomic regions from SNP 206743 to 207343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,914 DEBUG Processing 139/732 atomic regions from SNP 41538 to 42139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,945 DEBUG Processing 410/674 atomic regions from SNP 122998 to 123598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,036 DEBUG Processing 857/866 atomic regions from SNP 256916 to 257516 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,047 DEBUG Processing 711/714 atomic regions from SNP 213261 to 213861 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,141 DEBUG Processing 691/743 atomic regions from SNP 207043 to 207643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,149 DEBUG Processing 140/732 atomic regions from SNP 41839 to 42440 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,190 DEBUG Processing 411/674 atomic regions from SNP 123298 to 123898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,283 DEBUG Processing 858/866 atomic regions from SNP 257216 to 257816 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,287 DEBUG Processing 712/714 atomic regions from SNP 213561 to 214161 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,377 DEBUG Processing 141/732 atomic regions from SNP 42140 to 42741 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,403 DEBUG Processing 692/743 atomic regions from SNP 207343 to 207943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,421 DEBUG Processing 412/674 atomic regions from SNP 123598 to 124198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,520 DEBUG Processing 713/714 atomic regions from SNP 213861 to 214461 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,530 DEBUG Processing 859/866 atomic regions from SNP 257516 to 258116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,609 DEBUG Processing 142/732 atomic regions from SNP 42441 to 43042 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,642 DEBUG Processing 413/674 atomic regions from SNP 123898 to 124498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,658 DEBUG Processing 693/743 atomic regions from SNP 207643 to 208243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,747 DEBUG Processing 714/714 atomic regions from SNP 214161 to 214761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,780 DEBUG Processing 860/866 atomic regions from SNP 257816 to 258416 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,834 DEBUG Processing 143/732 atomic regions from SNP 42742 to 43343 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,860 DEBUG Processing 414/674 atomic regions from SNP 124198 to 124798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,872 DEBUG Unique SNPs positions in subchromosome 3: 214762 2025-01-31 09:52:50,901 DEBUG Processing 694/743 atomic regions from SNP 207943 to 208543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,038 DEBUG Processing 861/866 atomic regions from SNP 258116 to 258716 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,065 DEBUG Processing 144/732 atomic regions from SNP 43043 to 43644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,083 DEBUG Processing 415/674 atomic regions from SNP 124498 to 125098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,143 DEBUG Processing 695/743 atomic regions from SNP 208243 to 208843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,301 DEBUG Processing 862/866 atomic regions from SNP 258416 to 259016 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,308 DEBUG Processing 145/732 atomic regions from SNP 43344 to 43945 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,311 DEBUG Processing 416/674 atomic regions from SNP 124798 to 125398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,392 DEBUG Processing 696/743 atomic regions from SNP 208543 to 209143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,536 DEBUG Processing 417/674 atomic regions from SNP 125098 to 125698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,541 DEBUG Processing 146/732 atomic regions from SNP 43645 to 44246 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,556 DEBUG Processing 863/866 atomic regions from SNP 258716 to 259316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,655 DEBUG Processing 697/743 atomic regions from SNP 208843 to 209443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,758 DEBUG Processing 418/674 atomic regions from SNP 125398 to 125998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,770 DEBUG Processing 147/732 atomic regions from SNP 43946 to 44547 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,810 DEBUG Processing 864/866 atomic regions from SNP 259016 to 259616 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,921 DEBUG Processing 698/743 atomic regions from SNP 209143 to 209743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,992 DEBUG Processing 419/674 atomic regions from SNP 125698 to 126298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,009 DEBUG Processing 148/732 atomic regions from SNP 44247 to 44848 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,076 DEBUG Processing 865/866 atomic regions from SNP 259316 to 259916 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,196 DEBUG Processing 699/743 atomic regions from SNP 209443 to 210043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,219 DEBUG Processing 420/674 atomic regions from SNP 125998 to 126598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,245 DEBUG Processing 149/732 atomic regions from SNP 44548 to 45149 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,346 DEBUG Processing 866/866 atomic regions from SNP 259616 to 260216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,448 DEBUG Processing 421/674 atomic regions from SNP 126298 to 126898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,471 DEBUG Processing 700/743 atomic regions from SNP 209743 to 210343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,484 DEBUG Processing 150/732 atomic regions from SNP 44849 to 45450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,488 DEBUG Unique SNPs positions in subchromosome 1: 260217 2025-01-31 09:52:52,681 DEBUG Processing 422/674 atomic regions from SNP 126598 to 127198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,718 DEBUG Processing 151/732 atomic regions from SNP 45150 to 45751 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,757 DEBUG Processing 701/743 atomic regions from SNP 210043 to 210643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,905 DEBUG Processing 423/674 atomic regions from SNP 126898 to 127498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,952 DEBUG Processing 152/732 atomic regions from SNP 45451 to 46052 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,049 DEBUG Processing 702/743 atomic regions from SNP 210343 to 210943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,151 DEBUG Processing 424/674 atomic regions from SNP 127198 to 127798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,186 DEBUG Processing 153/732 atomic regions from SNP 45752 to 46353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,330 DEBUG Processing 703/743 atomic regions from SNP 210643 to 211243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,378 DEBUG Processing 425/674 atomic regions from SNP 127498 to 128098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,417 DEBUG Processing 154/732 atomic regions from SNP 46053 to 46654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,606 DEBUG Processing 426/674 atomic regions from SNP 127798 to 128398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,607 DEBUG Processing 704/743 atomic regions from SNP 210943 to 211543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,648 DEBUG Processing 155/732 atomic regions from SNP 46354 to 46955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,839 DEBUG Processing 427/674 atomic regions from SNP 128098 to 128698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,885 DEBUG Processing 156/732 atomic regions from SNP 46655 to 47256 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,890 DEBUG Processing 705/743 atomic regions from SNP 211243 to 211843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,069 DEBUG Processing 428/674 atomic regions from SNP 128398 to 128998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,124 DEBUG Processing 157/732 atomic regions from SNP 46956 to 47557 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,173 DEBUG Processing 706/743 atomic regions from SNP 211543 to 212143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,300 DEBUG Processing 429/674 atomic regions from SNP 128698 to 129298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,368 DEBUG Processing 158/732 atomic regions from SNP 47257 to 47858 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,459 DEBUG Processing 707/743 atomic regions from SNP 211843 to 212443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,533 DEBUG Processing 430/674 atomic regions from SNP 128998 to 129598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,611 DEBUG Processing 159/732 atomic regions from SNP 47558 to 48159 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,723 DEBUG Subchromosome time: 209.69941218406893, subchromosome SNPs: 214762 2025-01-31 09:52:54,724 DEBUG Estimated BADs: [2.20, 1.10, 4.39, 1.10, 4.39, 0.00, 1.10, 4.39, 1.10, 4.39, 0.73, 2.20, 1.10, 6.59, 2.20, 0.73, 1.10, 0.55, 2.20, 1.10, 2.20, 0.55, 2.20, 1.10, 0.55, 2.20, 0.73, 2.20, 4.39, 2.20, 4.39] SNP counts: [6703, 6922, 3317, 2455, 2005, 41, 1573, 3042, 1803, 7393, 1302, 13569, 4244, 2694, 11432, 4802, 7239, 5100, 11449, 4203, 24928, 6284, 3890, 4490, 3327, 19407, 3525, 34101, 1764, 24897, 8304] SNP IDs counts: [6703, 6922, 3317, 2455, 2005, 41, 1573, 3042, 1803, 7393, 1302, 13569, 4244, 2694, 11432, 4802, 7239, 5100, 11449, 4203, 24928, 6284, 3890, 4490, 3327, 19407, 3525, 34101, 1764, 24897, 8304] Critical gap: 662856bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 7.42Mbp, 14.73Mbp, 17.22Mbp, 19.01Mbp, 20.10Mbp[0.68Mbp], 21.37Mbp[1.42Mbp], 24.30Mbp, 25.96Mbp, 27.15Mbp, 31.15Mbp, 33.35Mbp, 41.67Mbp, 44.30Mbp, 45.69Mbp, 52.21Mbp, 55.05Mbp, 59.29Mbp, 62.79Mbp, 69.01Mbp, 71.29Mbp, 84.89Mbp, 88.56Mbp, 90.74Mbp, 93.24Mbp, 95.19Mbp, 106.33Mbp, 108.42Mbp, 126.69Mbp, 127.61Mbp, 140.92Mbp, 145.44Mbp] 2025-01-31 09:52:54,724 DEBUG chr7 time: 209.69998231111094 s 2025-01-31 09:52:54,743 DEBUG Processing 708/743 atomic regions from SNP 212143 to 212743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,766 DEBUG Processing 431/674 atomic regions from SNP 129298 to 129898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,849 DEBUG Processing 160/732 atomic regions from SNP 47859 to 48460 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,894 DEBUG chr7: Fitting background model for 30 segments 2025-01-31 09:52:55,009 DEBUG Processing 432/674 atomic regions from SNP 129598 to 130198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,039 DEBUG Processing 709/743 atomic regions from SNP 212443 to 213043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,098 DEBUG Processing 161/732 atomic regions from SNP 48160 to 48761 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,250 DEBUG Processing 433/674 atomic regions from SNP 129898 to 130498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,331 DEBUG Processing 710/743 atomic regions from SNP 212743 to 213343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,344 DEBUG Processing 162/732 atomic regions from SNP 48461 to 49062 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,480 DEBUG Processing 434/674 atomic regions from SNP 130198 to 130798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,586 DEBUG Processing 163/732 atomic regions from SNP 48762 to 49363 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,617 DEBUG Processing 711/743 atomic regions from SNP 213043 to 213643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,723 DEBUG Processing 435/674 atomic regions from SNP 130498 to 131098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,839 DEBUG Processing 164/732 atomic regions from SNP 49063 to 49664 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,899 DEBUG Processing 712/743 atomic regions from SNP 213343 to 213943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,954 DEBUG Processing 436/674 atomic regions from SNP 130798 to 131398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,091 DEBUG Processing 165/732 atomic regions from SNP 49364 to 49965 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,180 DEBUG Processing 713/743 atomic regions from SNP 213643 to 214243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,188 DEBUG Processing 437/674 atomic regions from SNP 131098 to 131698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,347 DEBUG Processing 166/732 atomic regions from SNP 49665 to 50266 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,422 DEBUG Processing 438/674 atomic regions from SNP 131398 to 131998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,469 DEBUG Processing 714/743 atomic regions from SNP 213943 to 214543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,584 DEBUG Processing 167/732 atomic regions from SNP 49966 to 50567 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,654 DEBUG Processing 439/674 atomic regions from SNP 131698 to 132298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,747 DEBUG Processing 715/743 atomic regions from SNP 214243 to 214843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,817 DEBUG Processing 168/732 atomic regions from SNP 50267 to 50868 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,892 DEBUG Processing 440/674 atomic regions from SNP 131998 to 132598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,023 DEBUG Processing 716/743 atomic regions from SNP 214543 to 215143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,057 DEBUG Processing 169/732 atomic regions from SNP 50568 to 51169 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,126 DEBUG Processing 441/674 atomic regions from SNP 132298 to 132898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,173 DEBUG Subchromosome time: 262.5549864110071, subchromosome SNPs: 260217 2025-01-31 09:52:57,174 DEBUG Estimated BADs: [1.91, 0.95, 3.82, 1.91, 0.64, 1.91, 0.95, 3.82, 1.91, 0.64, 0.95, 3.82, 1.91, 0.95, 1.91, 3.82, 1.91, 0.64, 1.91] SNP counts: [11262, 32416, 3354, 25478, 2695, 28507, 15008, 3289, 3306, 8998, 6160, 16345, 21588, 13195, 3612, 21306, 8673, 4817, 30208] SNP IDs counts: [11262, 32416, 3354, 25478, 2695, 28507, 15008, 3289, 3306, 8998, 6160, 16345, 21588, 13195, 3612, 21306, 8673, 4817, 30208] Critical gap: 659952bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.52Mbp, 28.32Mbp, 30.08Mbp, 44.13Mbp, 45.67Mbp, 61.66Mbp, 70.72Mbp, 72.46Mbp, 74.31Mbp, 79.50Mbp, 83.00Mbp, 91.82Mbp, 103.52Mbp, 111.06Mbp, 113.08Mbp, 125.14Mbp, 129.83Mbp, 132.97Mbp, 149.74Mbp] 2025-01-31 09:52:57,174 DEBUG chr6 time: 262.5554836440133 s 2025-01-31 09:52:57,293 DEBUG Processing 717/743 atomic regions from SNP 214843 to 215443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,300 DEBUG Processing 170/732 atomic regions from SNP 50869 to 51470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,358 DEBUG chr6: Fitting background model for 19 segments 2025-01-31 09:52:57,359 DEBUG Processing 442/674 atomic regions from SNP 132598 to 133198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,536 DEBUG Processing 171/732 atomic regions from SNP 51170 to 51771 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,564 DEBUG Processing 718/743 atomic regions from SNP 215143 to 215743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,593 DEBUG Processing 443/674 atomic regions from SNP 132898 to 133498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,821 DEBUG Processing 172/732 atomic regions from SNP 51471 to 52072 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,874 DEBUG Processing 444/674 atomic regions from SNP 133198 to 133798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,883 DEBUG Processing 719/743 atomic regions from SNP 215443 to 216043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,121 DEBUG Processing 173/732 atomic regions from SNP 51772 to 52373 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,130 DEBUG Processing 445/674 atomic regions from SNP 133498 to 134098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,178 DEBUG Processing 720/743 atomic regions from SNP 215743 to 216343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,377 DEBUG Processing 174/732 atomic regions from SNP 52073 to 52674 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,379 DEBUG Processing 446/674 atomic regions from SNP 133798 to 134398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,456 DEBUG Processing 721/743 atomic regions from SNP 216043 to 216643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,614 DEBUG Processing 447/674 atomic regions from SNP 134098 to 134698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,618 DEBUG Processing 175/732 atomic regions from SNP 52374 to 52975 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,722 DEBUG Processing 722/743 atomic regions from SNP 216343 to 216943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,855 DEBUG Processing 448/674 atomic regions from SNP 134398 to 134998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,870 DEBUG Processing 176/732 atomic regions from SNP 52675 to 53276 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,989 DEBUG Processing 723/743 atomic regions from SNP 216643 to 217243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,086 DEBUG Processing 449/674 atomic regions from SNP 134698 to 135298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,111 DEBUG Processing 177/732 atomic regions from SNP 52976 to 53577 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,252 DEBUG Processing 724/743 atomic regions from SNP 216943 to 217543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,319 DEBUG Processing 450/674 atomic regions from SNP 134998 to 135598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,353 DEBUG Processing 178/732 atomic regions from SNP 53277 to 53878 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,518 DEBUG Processing 725/743 atomic regions from SNP 217243 to 217843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,553 DEBUG Processing 451/674 atomic regions from SNP 135298 to 135898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,599 DEBUG Processing 179/732 atomic regions from SNP 53578 to 54179 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,789 DEBUG Processing 452/674 atomic regions from SNP 135598 to 136198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,790 DEBUG Processing 726/743 atomic regions from SNP 217543 to 218143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,844 DEBUG Processing 180/732 atomic regions from SNP 53879 to 54480 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,024 DEBUG Processing 453/674 atomic regions from SNP 135898 to 136498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,066 DEBUG Processing 727/743 atomic regions from SNP 217843 to 218443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,095 DEBUG Processing 181/732 atomic regions from SNP 54180 to 54781 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,268 DEBUG Processing 454/674 atomic regions from SNP 136198 to 136798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,348 DEBUG Processing 182/732 atomic regions from SNP 54481 to 55082 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,359 DEBUG Processing 728/743 atomic regions from SNP 218143 to 218743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,499 DEBUG Processing 455/674 atomic regions from SNP 136498 to 137098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,586 DEBUG Processing 183/732 atomic regions from SNP 54782 to 55383 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,635 DEBUG Processing 729/743 atomic regions from SNP 218443 to 219043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,726 DEBUG Processing 456/674 atomic regions from SNP 136798 to 137398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,822 DEBUG Processing 184/732 atomic regions from SNP 55083 to 55684 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,911 DEBUG Processing 730/743 atomic regions from SNP 218743 to 219343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,959 DEBUG Processing 457/674 atomic regions from SNP 137098 to 137698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,055 DEBUG Processing 185/732 atomic regions from SNP 55384 to 55985 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,173 DEBUG Processing 731/743 atomic regions from SNP 219043 to 219643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,187 DEBUG Processing 458/674 atomic regions from SNP 137398 to 137998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,283 DEBUG Processing 186/732 atomic regions from SNP 55685 to 56286 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,417 DEBUG Processing 459/674 atomic regions from SNP 137698 to 138298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,429 DEBUG Processing 732/743 atomic regions from SNP 219343 to 219943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,511 DEBUG Processing 187/732 atomic regions from SNP 55986 to 56587 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,646 DEBUG Processing 460/674 atomic regions from SNP 137998 to 138598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,677 DEBUG Processing 733/743 atomic regions from SNP 219643 to 220243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,751 DEBUG Processing 188/732 atomic regions from SNP 56287 to 56888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,878 DEBUG Processing 461/674 atomic regions from SNP 138298 to 138898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,924 DEBUG Processing 734/743 atomic regions from SNP 219943 to 220543 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,015 DEBUG Processing 189/732 atomic regions from SNP 56588 to 57189 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,108 DEBUG Processing 462/674 atomic regions from SNP 138598 to 139198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,174 DEBUG Processing 735/743 atomic regions from SNP 220243 to 220843 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,261 DEBUG Processing 190/732 atomic regions from SNP 56889 to 57490 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,348 DEBUG Processing 463/674 atomic regions from SNP 138898 to 139498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,420 DEBUG Processing 736/743 atomic regions from SNP 220543 to 221143 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,498 DEBUG Processing 191/732 atomic regions from SNP 57190 to 57791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,583 DEBUG Processing 464/674 atomic regions from SNP 139198 to 139798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,664 DEBUG Processing 737/743 atomic regions from SNP 220843 to 221443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,737 DEBUG Processing 192/732 atomic regions from SNP 57491 to 58092 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,816 DEBUG Processing 465/674 atomic regions from SNP 139498 to 140098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,905 DEBUG Processing 738/743 atomic regions from SNP 221143 to 221743 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,972 DEBUG Processing 193/732 atomic regions from SNP 57792 to 58393 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,048 DEBUG Processing 466/674 atomic regions from SNP 139798 to 140398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,144 DEBUG Processing 739/743 atomic regions from SNP 221443 to 222043 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,212 DEBUG Processing 194/732 atomic regions from SNP 58093 to 58694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,287 DEBUG Processing 467/674 atomic regions from SNP 140098 to 140698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,394 DEBUG Processing 740/743 atomic regions from SNP 221743 to 222343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,458 DEBUG Processing 195/732 atomic regions from SNP 58394 to 58995 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,529 DEBUG Processing 468/674 atomic regions from SNP 140398 to 140998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,646 DEBUG Processing 741/743 atomic regions from SNP 222043 to 222643 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,700 DEBUG Processing 196/732 atomic regions from SNP 58695 to 59296 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,761 DEBUG Processing 469/674 atomic regions from SNP 140698 to 141298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,901 DEBUG Processing 742/743 atomic regions from SNP 222343 to 222943 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,939 DEBUG Processing 197/732 atomic regions from SNP 58996 to 59597 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,998 DEBUG Processing 470/674 atomic regions from SNP 140998 to 141598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,144 DEBUG Processing 743/743 atomic regions from SNP 222643 to 223243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,184 DEBUG Processing 198/732 atomic regions from SNP 59297 to 59898 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,241 DEBUG Processing 471/674 atomic regions from SNP 141298 to 141898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,286 DEBUG Unique SNPs positions in subchromosome 1: 223244 2025-01-31 09:53:04,416 DEBUG Processing 199/732 atomic regions from SNP 59598 to 60199 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,465 DEBUG Processing 472/674 atomic regions from SNP 141598 to 142198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,651 DEBUG Processing 200/732 atomic regions from SNP 59899 to 60500 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,693 DEBUG Processing 473/674 atomic regions from SNP 141898 to 142498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,884 DEBUG Processing 201/732 atomic regions from SNP 60200 to 60801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,920 DEBUG Processing 474/674 atomic regions from SNP 142198 to 142798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,116 DEBUG Processing 202/732 atomic regions from SNP 60501 to 61102 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,142 DEBUG Processing 475/674 atomic regions from SNP 142498 to 143098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,357 DEBUG Processing 203/732 atomic regions from SNP 60802 to 61403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,372 DEBUG Processing 476/674 atomic regions from SNP 142798 to 143398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,610 DEBUG Processing 204/732 atomic regions from SNP 61103 to 61704 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,610 DEBUG Processing 477/674 atomic regions from SNP 143098 to 143698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,847 DEBUG Processing 478/674 atomic regions from SNP 143398 to 143998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,852 DEBUG Processing 205/732 atomic regions from SNP 61404 to 62005 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,902 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:53:06,075 DEBUG Processing 479/674 atomic regions from SNP 143698 to 144298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,088 DEBUG Processing 206/732 atomic regions from SNP 61705 to 62306 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,303 DEBUG Processing 480/674 atomic regions from SNP 143998 to 144598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,323 DEBUG Processing 207/732 atomic regions from SNP 62006 to 62607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,546 DEBUG Processing 481/674 atomic regions from SNP 144298 to 144898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,577 DEBUG Processing 208/732 atomic regions from SNP 62307 to 62908 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,767 DEBUG Processing 482/674 atomic regions from SNP 144598 to 145198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,809 DEBUG Processing 209/732 atomic regions from SNP 62608 to 63209 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,983 DEBUG Processing 483/674 atomic regions from SNP 144898 to 145498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,041 DEBUG Processing 210/732 atomic regions from SNP 62909 to 63510 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,206 DEBUG Processing 484/674 atomic regions from SNP 145198 to 145798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,276 DEBUG Processing 211/732 atomic regions from SNP 63210 to 63811 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,431 DEBUG Processing 485/674 atomic regions from SNP 145498 to 146098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,510 DEBUG Processing 212/732 atomic regions from SNP 63511 to 64112 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,656 DEBUG Processing 486/674 atomic regions from SNP 145798 to 146398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,751 DEBUG Processing 213/732 atomic regions from SNP 63812 to 64413 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,877 DEBUG Processing 487/674 atomic regions from SNP 146098 to 146698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,993 DEBUG Processing 214/732 atomic regions from SNP 64113 to 64714 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,092 DEBUG Processing 488/674 atomic regions from SNP 146398 to 146998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,222 DEBUG Processing 215/732 atomic regions from SNP 64414 to 65015 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,307 DEBUG Processing 489/674 atomic regions from SNP 146698 to 147298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,454 DEBUG Processing 216/732 atomic regions from SNP 64715 to 65316 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,529 DEBUG Processing 490/674 atomic regions from SNP 146998 to 147598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,689 DEBUG Processing 217/732 atomic regions from SNP 65016 to 65617 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,756 DEBUG Processing 491/674 atomic regions from SNP 147298 to 147898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,931 DEBUG Processing 218/732 atomic regions from SNP 65317 to 65918 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,987 DEBUG Processing 492/674 atomic regions from SNP 147598 to 148198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,168 DEBUG Processing 219/732 atomic regions from SNP 65618 to 66219 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,220 DEBUG Processing 493/674 atomic regions from SNP 147898 to 148498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,435 DEBUG Processing 220/732 atomic regions from SNP 65919 to 66520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,453 DEBUG Processing 494/674 atomic regions from SNP 148198 to 148798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,684 DEBUG Processing 221/732 atomic regions from SNP 66220 to 66821 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,692 DEBUG Processing 495/674 atomic regions from SNP 148498 to 149098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,920 DEBUG Processing 496/674 atomic regions from SNP 148798 to 149398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,926 DEBUG Processing 222/732 atomic regions from SNP 66521 to 67122 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,150 DEBUG Processing 497/674 atomic regions from SNP 149098 to 149698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,170 DEBUG Processing 223/732 atomic regions from SNP 66822 to 67423 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,385 DEBUG Processing 498/674 atomic regions from SNP 149398 to 149998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,424 DEBUG Processing 224/732 atomic regions from SNP 67123 to 67724 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,625 DEBUG Processing 499/674 atomic regions from SNP 149698 to 150298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,685 DEBUG Processing 225/732 atomic regions from SNP 67424 to 68025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,852 DEBUG Processing 500/674 atomic regions from SNP 149998 to 150598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,923 DEBUG Processing 226/732 atomic regions from SNP 67725 to 68326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,099 DEBUG Processing 501/674 atomic regions from SNP 150298 to 150898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,168 DEBUG Processing 227/732 atomic regions from SNP 68026 to 68627 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,333 DEBUG Processing 502/674 atomic regions from SNP 150598 to 151198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,410 DEBUG Processing 228/732 atomic regions from SNP 68327 to 68928 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,563 DEBUG Processing 503/674 atomic regions from SNP 150898 to 151498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,647 DEBUG Processing 229/732 atomic regions from SNP 68628 to 69229 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,791 DEBUG Processing 504/674 atomic regions from SNP 151198 to 151798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,885 DEBUG Processing 230/732 atomic regions from SNP 68929 to 69530 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,024 DEBUG Processing 505/674 atomic regions from SNP 151498 to 152098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,127 DEBUG Processing 231/732 atomic regions from SNP 69230 to 69831 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,249 DEBUG Processing 506/674 atomic regions from SNP 151798 to 152398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,361 DEBUG Processing 232/732 atomic regions from SNP 69531 to 70132 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,467 DEBUG Processing 507/674 atomic regions from SNP 152098 to 152698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,596 DEBUG Processing 233/732 atomic regions from SNP 69832 to 70433 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,692 DEBUG Processing 508/674 atomic regions from SNP 152398 to 152998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,837 DEBUG Processing 234/732 atomic regions from SNP 70133 to 70734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,914 DEBUG Processing 509/674 atomic regions from SNP 152698 to 153298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,074 DEBUG Processing 235/732 atomic regions from SNP 70434 to 71035 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,136 DEBUG Processing 510/674 atomic regions from SNP 152998 to 153598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,320 DEBUG Processing 236/732 atomic regions from SNP 70735 to 71336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,354 DEBUG Processing 511/674 atomic regions from SNP 153298 to 153898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,559 DEBUG Processing 237/732 atomic regions from SNP 71036 to 71637 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,572 DEBUG Processing 512/674 atomic regions from SNP 153598 to 154198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,793 DEBUG Processing 513/674 atomic regions from SNP 153898 to 154498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,819 DEBUG Processing 238/732 atomic regions from SNP 71337 to 71938 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,014 DEBUG Processing 514/674 atomic regions from SNP 154198 to 154798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,069 DEBUG Processing 239/732 atomic regions from SNP 71638 to 72239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,233 DEBUG Processing 515/674 atomic regions from SNP 154498 to 155098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,317 DEBUG Processing 240/732 atomic regions from SNP 71939 to 72539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,458 DEBUG Processing 516/674 atomic regions from SNP 154798 to 155398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,565 DEBUG Processing 241/732 atomic regions from SNP 72239 to 72839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,673 DEBUG Processing 517/674 atomic regions from SNP 155098 to 155698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,812 DEBUG Processing 242/732 atomic regions from SNP 72539 to 73139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,835 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:53:14,891 DEBUG Processing 518/674 atomic regions from SNP 155398 to 155998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,063 DEBUG Processing 243/732 atomic regions from SNP 72839 to 73439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,116 DEBUG Processing 519/674 atomic regions from SNP 155698 to 156298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,249 DEBUG Subchromosome time: 224.56705793796573, subchromosome SNPs: 223244 2025-01-31 09:53:15,249 DEBUG Estimated BADs: [2.26, 0.75, 2.26, 0.75, 2.26, 0.75, 2.26, 0.57, 1.13, 6.78, 2.26, 0.57, 2.26, 4.52, 2.26, 4.52, 6.78, 4.52] SNP counts: [2783, 8446, 32739, 2061, 12099, 9798, 12017, 8099, 26997, 2403, 45607, 11389, 4205, 3616, 17630, 4853, 9301, 9201] SNP IDs counts: [2783, 8446, 32739, 2061, 12099, 9798, 12017, 8099, 26997, 2403, 45607, 11389, 4205, 3616, 17630, 4853, 9301, 9201] Critical gap: 613666bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.71Mbp, 9.57Mbp, 29.17Mbp, 30.42Mbp, 37.04Mbp, 42.76Mbp, 49.39Mbp, 54.04Mbp, 70.01Mbp, 71.39Mbp, 96.49Mbp, 102.95Mbp, 105.29Mbp, 107.20Mbp, 116.86Mbp, 119.42Mbp, 124.35Mbp, 129.40Mbp] 2025-01-31 09:53:15,250 DEBUG chr8 time: 224.56763194105588 s 2025-01-31 09:53:15,326 DEBUG Processing 244/732 atomic regions from SNP 73139 to 73739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,348 DEBUG Processing 520/674 atomic regions from SNP 155998 to 156598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,389 DEBUG chr8: Fitting background model for 18 segments 2025-01-31 09:53:15,573 DEBUG Processing 521/674 atomic regions from SNP 156298 to 156898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,585 DEBUG Processing 245/732 atomic regions from SNP 73439 to 74039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,806 DEBUG Processing 522/674 atomic regions from SNP 156598 to 157198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,855 DEBUG Processing 246/732 atomic regions from SNP 73739 to 74339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,039 DEBUG Processing 523/674 atomic regions from SNP 156898 to 157498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,117 DEBUG Processing 247/732 atomic regions from SNP 74039 to 74639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,267 DEBUG Processing 524/674 atomic regions from SNP 157198 to 157798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,370 DEBUG Processing 248/732 atomic regions from SNP 74339 to 74939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,498 DEBUG Processing 525/674 atomic regions from SNP 157498 to 158098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,611 DEBUG Processing 249/732 atomic regions from SNP 74639 to 75239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,719 DEBUG Processing 526/674 atomic regions from SNP 157798 to 158398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,857 DEBUG Processing 250/732 atomic regions from SNP 74939 to 75539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,941 DEBUG Processing 527/674 atomic regions from SNP 158098 to 158698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,101 DEBUG Processing 251/732 atomic regions from SNP 75239 to 75839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,166 DEBUG Processing 528/674 atomic regions from SNP 158398 to 158998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,349 DEBUG Processing 252/732 atomic regions from SNP 75539 to 76139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,389 DEBUG Processing 529/674 atomic regions from SNP 158698 to 159298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,598 DEBUG Processing 253/732 atomic regions from SNP 75839 to 76439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,619 DEBUG Processing 530/674 atomic regions from SNP 158998 to 159598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,845 DEBUG Processing 531/674 atomic regions from SNP 159298 to 159898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,855 DEBUG Processing 254/732 atomic regions from SNP 76139 to 76739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,070 DEBUG Processing 532/674 atomic regions from SNP 159598 to 160198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,107 DEBUG Processing 255/732 atomic regions from SNP 76439 to 77039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,300 DEBUG Processing 533/674 atomic regions from SNP 159898 to 160498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,371 DEBUG Processing 256/732 atomic regions from SNP 76739 to 77339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,545 DEBUG Processing 534/674 atomic regions from SNP 160198 to 160798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,639 DEBUG Processing 257/732 atomic regions from SNP 77039 to 77639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,779 DEBUG Processing 535/674 atomic regions from SNP 160498 to 161098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,893 DEBUG Processing 258/732 atomic regions from SNP 77339 to 77939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,022 DEBUG Processing 536/674 atomic regions from SNP 160798 to 161398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,159 DEBUG Processing 259/732 atomic regions from SNP 77639 to 78239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,264 DEBUG Processing 537/674 atomic regions from SNP 161098 to 161698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,401 DEBUG Processing 260/732 atomic regions from SNP 77939 to 78539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,495 DEBUG Processing 538/674 atomic regions from SNP 161398 to 161998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,645 DEBUG Processing 261/732 atomic regions from SNP 78239 to 78839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,731 DEBUG Processing 539/674 atomic regions from SNP 161698 to 162298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,892 DEBUG Processing 262/732 atomic regions from SNP 78539 to 79139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,963 DEBUG Processing 540/674 atomic regions from SNP 161998 to 162598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,020 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:53:20,022 DEBUG chr11: Signal quantile: 0.995. signal threshold: 19. Best RMSEA: 0.029 2025-01-31 09:53:20,136 DEBUG Processing 263/732 atomic regions from SNP 78839 to 79439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,199 DEBUG Processing 541/674 atomic regions from SNP 162298 to 162898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,381 DEBUG Processing 264/732 atomic regions from SNP 79139 to 79739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,437 DEBUG Processing 542/674 atomic regions from SNP 162598 to 163198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,629 DEBUG Processing 265/732 atomic regions from SNP 79439 to 80039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,672 DEBUG Processing 543/674 atomic regions from SNP 162898 to 163498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,868 DEBUG Processing 266/732 atomic regions from SNP 79739 to 80339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,899 DEBUG Processing 544/674 atomic regions from SNP 163198 to 163798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,104 DEBUG Processing 267/732 atomic regions from SNP 80039 to 80639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,126 DEBUG Processing 545/674 atomic regions from SNP 163498 to 164098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,343 DEBUG Processing 268/732 atomic regions from SNP 80339 to 80939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,354 DEBUG Processing 546/674 atomic regions from SNP 163798 to 164398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,582 DEBUG Processing 269/732 atomic regions from SNP 80639 to 81239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,586 DEBUG Processing 547/674 atomic regions from SNP 164098 to 164698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,813 DEBUG Processing 548/674 atomic regions from SNP 164398 to 164998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,821 DEBUG Processing 270/732 atomic regions from SNP 80939 to 81539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,039 DEBUG Processing 549/674 atomic regions from SNP 164698 to 165298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,055 DEBUG Processing 271/732 atomic regions from SNP 81239 to 81839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,270 DEBUG Processing 550/674 atomic regions from SNP 164998 to 165598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,294 DEBUG Processing 272/732 atomic regions from SNP 81539 to 82139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,368 DEBUG chr11 total SNP count: 219271 2025-01-31 09:53:22,368 DEBUG chr11 length: 122082543 2025-01-31 09:53:22,368 DEBUG ----------------------------------------- 2025-01-31 09:53:22,369 INFO Processing SNPs in chr11 2025-01-31 09:53:22,503 DEBUG Processing 551/674 atomic regions from SNP 165298 to 165898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,539 DEBUG Processing 273/732 atomic regions from SNP 81839 to 82439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,604 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 219271)] 2025-01-31 09:53:22,730 DEBUG Processing 552/674 atomic regions from SNP 165598 to 166198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,760 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:22,779 DEBUG Processing 274/732 atomic regions from SNP 82139 to 82739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,965 DEBUG Processing 553/674 atomic regions from SNP 165898 to 166498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,019 DEBUG Processing 275/732 atomic regions from SNP 82439 to 83039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,194 DEBUG Processing 554/674 atomic regions from SNP 166198 to 166798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,258 DEBUG Processing 276/732 atomic regions from SNP 82739 to 83339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,423 DEBUG Processing 555/674 atomic regions from SNP 166498 to 167098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,492 DEBUG Processing 277/732 atomic regions from SNP 83039 to 83639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,653 DEBUG Processing 556/674 atomic regions from SNP 166798 to 167398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,718 DEBUG Processing 278/732 atomic regions from SNP 83339 to 83939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,877 DEBUG Processing 557/674 atomic regions from SNP 167098 to 167698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,943 DEBUG Processing 279/732 atomic regions from SNP 83639 to 84239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,116 DEBUG Processing 558/674 atomic regions from SNP 167398 to 167998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,173 DEBUG Processing 280/732 atomic regions from SNP 83939 to 84539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,335 DEBUG Processing 559/674 atomic regions from SNP 167698 to 168298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,396 DEBUG Processing 281/732 atomic regions from SNP 84239 to 84839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,557 DEBUG Processing 560/674 atomic regions from SNP 167998 to 168598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,629 DEBUG Processing 282/732 atomic regions from SNP 84539 to 85139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,800 DEBUG Processing 561/674 atomic regions from SNP 168298 to 168898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,867 DEBUG Processing 283/732 atomic regions from SNP 84839 to 85439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,025 DEBUG Processing 562/674 atomic regions from SNP 168598 to 169198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,101 DEBUG Processing 284/732 atomic regions from SNP 85139 to 85739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,254 DEBUG Processing 563/674 atomic regions from SNP 168898 to 169498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,338 DEBUG Processing 285/732 atomic regions from SNP 85439 to 86039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,483 DEBUG Processing 564/674 atomic regions from SNP 169198 to 169798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,591 DEBUG Processing 286/732 atomic regions from SNP 85739 to 86339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,711 DEBUG Processing 565/674 atomic regions from SNP 169498 to 170098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,829 DEBUG Processing 287/732 atomic regions from SNP 86039 to 86639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,932 DEBUG Processing 566/674 atomic regions from SNP 169798 to 170398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,070 DEBUG Processing 288/732 atomic regions from SNP 86339 to 86939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,159 DEBUG Processing 567/674 atomic regions from SNP 170098 to 170698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,320 DEBUG Processing 289/732 atomic regions from SNP 86639 to 87239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,393 DEBUG Processing 568/674 atomic regions from SNP 170398 to 170998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,557 DEBUG Processing 290/732 atomic regions from SNP 86939 to 87539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,619 DEBUG Processing 569/674 atomic regions from SNP 170698 to 171298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,790 DEBUG Processing 291/732 atomic regions from SNP 87239 to 87839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,845 DEBUG Processing 570/674 atomic regions from SNP 170998 to 171598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,031 DEBUG Processing 292/732 atomic regions from SNP 87539 to 88139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,083 DEBUG Processing 571/674 atomic regions from SNP 171298 to 171898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,280 DEBUG Processing 293/732 atomic regions from SNP 87839 to 88439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,325 DEBUG Processing 572/674 atomic regions from SNP 171598 to 172198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,530 DEBUG Processing 294/732 atomic regions from SNP 88139 to 88739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,564 DEBUG Processing 573/674 atomic regions from SNP 171898 to 172498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,654 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:53:27,770 DEBUG Processing 295/732 atomic regions from SNP 88439 to 89039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,799 DEBUG Processing 574/674 atomic regions from SNP 172198 to 172798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,015 DEBUG Processing 296/732 atomic regions from SNP 88739 to 89339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,033 DEBUG Processing 575/674 atomic regions from SNP 172498 to 173098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,206 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:53:28,208 DEBUG chr13: Signal quantile: 0.995. signal threshold: 16. Best RMSEA: 0.040 2025-01-31 09:53:28,271 DEBUG Processing 297/732 atomic regions from SNP 89039 to 89639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,281 DEBUG Processing 576/674 atomic regions from SNP 172798 to 173398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,519 DEBUG Processing 298/732 atomic regions from SNP 89339 to 89939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,521 DEBUG Processing 577/674 atomic regions from SNP 173098 to 173698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,759 DEBUG Processing 578/674 atomic regions from SNP 173398 to 173998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,763 DEBUG Processing 299/732 atomic regions from SNP 89639 to 90239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,997 DEBUG Processing 579/674 atomic regions from SNP 173698 to 174298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,009 DEBUG Processing 300/732 atomic regions from SNP 89939 to 90539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,231 DEBUG Processing 580/674 atomic regions from SNP 173998 to 174598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,251 DEBUG Processing 301/732 atomic regions from SNP 90239 to 90839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,462 DEBUG Processing 581/674 atomic regions from SNP 174298 to 174898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,495 DEBUG Processing 302/732 atomic regions from SNP 90539 to 91139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,695 DEBUG Processing 582/674 atomic regions from SNP 174598 to 175198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,735 DEBUG Processing 303/732 atomic regions from SNP 90839 to 91439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,918 DEBUG Processing 583/674 atomic regions from SNP 174898 to 175498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,975 DEBUG Processing 304/732 atomic regions from SNP 91139 to 91739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,140 DEBUG Processing 584/674 atomic regions from SNP 175198 to 175798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,207 DEBUG Processing 305/732 atomic regions from SNP 91439 to 92039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,371 DEBUG Processing 585/674 atomic regions from SNP 175498 to 176098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,439 DEBUG Processing 306/732 atomic regions from SNP 91739 to 92339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,502 DEBUG chr13 total SNP count: 205801 2025-01-31 09:53:30,502 DEBUG chr13 length: 120421639 2025-01-31 09:53:30,502 DEBUG ----------------------------------------- 2025-01-31 09:53:30,502 INFO Processing SNPs in chr13 2025-01-31 09:53:30,611 DEBUG Processing 586/674 atomic regions from SNP 175798 to 176398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,681 DEBUG Processing 307/732 atomic regions from SNP 92039 to 92639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,731 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 205801)] 2025-01-31 09:53:30,838 DEBUG Processing 587/674 atomic regions from SNP 176098 to 176698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,882 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:30,924 DEBUG Processing 308/732 atomic regions from SNP 92339 to 92939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,072 DEBUG Processing 588/674 atomic regions from SNP 176398 to 176998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,174 DEBUG Processing 309/732 atomic regions from SNP 92639 to 93239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,291 DEBUG Processing 589/674 atomic regions from SNP 176698 to 177298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,426 DEBUG Processing 310/732 atomic regions from SNP 92939 to 93539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,507 DEBUG Processing 590/674 atomic regions from SNP 176998 to 177598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,667 DEBUG Processing 311/732 atomic regions from SNP 93239 to 93839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,725 DEBUG Processing 591/674 atomic regions from SNP 177298 to 177898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,911 DEBUG Processing 312/732 atomic regions from SNP 93539 to 94139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,952 DEBUG Processing 592/674 atomic regions from SNP 177598 to 178198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,153 DEBUG Processing 313/732 atomic regions from SNP 93839 to 94439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,185 DEBUG Processing 593/674 atomic regions from SNP 177898 to 178498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,402 DEBUG Processing 314/732 atomic regions from SNP 94139 to 94739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,422 DEBUG Processing 594/674 atomic regions from SNP 178198 to 178798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,648 DEBUG Processing 315/732 atomic regions from SNP 94439 to 95039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,656 DEBUG Processing 595/674 atomic regions from SNP 178498 to 179098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,887 DEBUG Processing 596/674 atomic regions from SNP 178798 to 179398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,890 DEBUG Processing 316/732 atomic regions from SNP 94739 to 95339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,112 DEBUG Processing 597/674 atomic regions from SNP 179098 to 179698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,121 DEBUG Processing 317/732 atomic regions from SNP 95039 to 95639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,344 DEBUG Processing 598/674 atomic regions from SNP 179398 to 179998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,359 DEBUG Processing 318/732 atomic regions from SNP 95339 to 95939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,574 DEBUG Processing 599/674 atomic regions from SNP 179698 to 180298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,610 DEBUG Processing 319/732 atomic regions from SNP 95639 to 96239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,801 DEBUG Processing 600/674 atomic regions from SNP 179998 to 180598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,849 DEBUG Processing 320/732 atomic regions from SNP 95939 to 96539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,023 DEBUG Processing 601/674 atomic regions from SNP 180298 to 180898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,097 DEBUG Processing 321/732 atomic regions from SNP 96239 to 96839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,240 DEBUG Processing 602/674 atomic regions from SNP 180598 to 181198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,355 DEBUG Processing 322/732 atomic regions from SNP 96539 to 97139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,463 DEBUG Processing 603/674 atomic regions from SNP 180898 to 181498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,617 DEBUG Processing 323/732 atomic regions from SNP 96839 to 97439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,694 DEBUG Processing 604/674 atomic regions from SNP 181198 to 181798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,876 DEBUG Processing 324/732 atomic regions from SNP 97139 to 97739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,924 DEBUG Processing 605/674 atomic regions from SNP 181498 to 182098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,127 DEBUG Processing 325/732 atomic regions from SNP 97439 to 98039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,147 DEBUG Processing 606/674 atomic regions from SNP 181798 to 182398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,372 DEBUG Processing 607/674 atomic regions from SNP 182098 to 182698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,374 DEBUG Processing 326/732 atomic regions from SNP 97739 to 98339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,604 DEBUG Processing 608/674 atomic regions from SNP 182398 to 182998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,635 DEBUG Processing 327/732 atomic regions from SNP 98039 to 98639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,833 DEBUG Processing 609/674 atomic regions from SNP 182698 to 183298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,899 DEBUG Processing 328/732 atomic regions from SNP 98339 to 98939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,055 DEBUG Processing 610/674 atomic regions from SNP 182998 to 183598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,156 DEBUG Processing 329/732 atomic regions from SNP 98639 to 99239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,286 DEBUG Processing 611/674 atomic regions from SNP 183298 to 183898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,415 DEBUG Processing 330/732 atomic regions from SNP 98939 to 99539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,520 DEBUG Processing 612/674 atomic regions from SNP 183598 to 184198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,671 DEBUG Processing 331/732 atomic regions from SNP 99239 to 99839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,743 DEBUG Processing 613/674 atomic regions from SNP 183898 to 184498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,926 DEBUG Processing 332/732 atomic regions from SNP 99539 to 100139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,961 DEBUG Processing 614/674 atomic regions from SNP 184198 to 184798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,179 DEBUG Processing 333/732 atomic regions from SNP 99839 to 100439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,180 DEBUG Processing 615/674 atomic regions from SNP 184498 to 185098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,401 DEBUG Processing 616/674 atomic regions from SNP 184798 to 185398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,431 DEBUG Processing 334/732 atomic regions from SNP 100139 to 100739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,619 DEBUG Processing 617/674 atomic regions from SNP 185098 to 185698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,674 DEBUG Processing 335/732 atomic regions from SNP 100439 to 101039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,848 DEBUG Processing 618/674 atomic regions from SNP 185398 to 185998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,927 DEBUG Processing 336/732 atomic regions from SNP 100739 to 101339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,067 DEBUG Processing 619/674 atomic regions from SNP 185698 to 186298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,162 DEBUG Processing 337/732 atomic regions from SNP 101039 to 101639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,288 DEBUG Processing 620/674 atomic regions from SNP 185998 to 186598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,400 DEBUG Processing 338/732 atomic regions from SNP 101339 to 101939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,510 DEBUG Processing 621/674 atomic regions from SNP 186298 to 186898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,633 DEBUG Processing 339/732 atomic regions from SNP 101639 to 102239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,736 DEBUG Processing 622/674 atomic regions from SNP 186598 to 187198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,869 DEBUG Processing 340/732 atomic regions from SNP 101939 to 102539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,916 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:53:38,958 DEBUG Processing 623/674 atomic regions from SNP 186898 to 187498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,123 DEBUG Processing 341/732 atomic regions from SNP 102239 to 102839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,184 DEBUG Processing 624/674 atomic regions from SNP 187198 to 187798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,364 DEBUG Processing 342/732 atomic regions from SNP 102539 to 103139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,418 DEBUG Processing 625/674 atomic regions from SNP 187498 to 188098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,623 DEBUG Processing 343/732 atomic regions from SNP 102839 to 103439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,647 DEBUG Processing 626/674 atomic regions from SNP 187798 to 188398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,866 DEBUG Processing 344/732 atomic regions from SNP 103139 to 103739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,870 DEBUG Processing 627/674 atomic regions from SNP 188098 to 188698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,093 DEBUG Processing 345/732 atomic regions from SNP 103439 to 104039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,094 DEBUG Processing 628/674 atomic regions from SNP 188398 to 188998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,317 DEBUG Processing 629/674 atomic regions from SNP 188698 to 189298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,324 DEBUG Processing 346/732 atomic regions from SNP 103739 to 104339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,429 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:53:40,431 WARNING chr12: Best RMSEA: 0.052. Chromosome fit might be poorly approximated. 2025-01-31 09:53:40,431 DEBUG chr12: Signal quantile: 0.995. signal threshold: 12. Best RMSEA: 0.052 2025-01-31 09:53:40,548 DEBUG Processing 630/674 atomic regions from SNP 188998 to 189598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,560 DEBUG Processing 347/732 atomic regions from SNP 104039 to 104639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,778 DEBUG Processing 631/674 atomic regions from SNP 189298 to 189898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,799 DEBUG Processing 348/732 atomic regions from SNP 104339 to 104939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,997 DEBUG Processing 632/674 atomic regions from SNP 189598 to 190198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,038 DEBUG Processing 349/732 atomic regions from SNP 104639 to 105239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,218 DEBUG Processing 633/674 atomic regions from SNP 189898 to 190498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,278 DEBUG Processing 350/732 atomic regions from SNP 104939 to 105539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,437 DEBUG Processing 634/674 atomic regions from SNP 190198 to 190798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,518 DEBUG Processing 351/732 atomic regions from SNP 105239 to 105839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,666 DEBUG Processing 635/674 atomic regions from SNP 190498 to 191098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,776 DEBUG Processing 352/732 atomic regions from SNP 105539 to 106139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,887 DEBUG Processing 636/674 atomic regions from SNP 190798 to 191398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,011 DEBUG Processing 353/732 atomic regions from SNP 105839 to 106439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,109 DEBUG Processing 637/674 atomic regions from SNP 191098 to 191698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,245 DEBUG Processing 354/732 atomic regions from SNP 106139 to 106739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,328 DEBUG Processing 638/674 atomic regions from SNP 191398 to 191998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,486 DEBUG Processing 355/732 atomic regions from SNP 106439 to 107039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,546 DEBUG Processing 639/674 atomic regions from SNP 191698 to 192298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,652 DEBUG chr12 total SNP count: 201640 2025-01-31 09:53:42,652 DEBUG chr12 length: 120129022 2025-01-31 09:53:42,652 DEBUG ----------------------------------------- 2025-01-31 09:53:42,652 INFO Processing SNPs in chr12 2025-01-31 09:53:42,736 DEBUG Processing 356/732 atomic regions from SNP 106739 to 107339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,768 DEBUG Processing 640/674 atomic regions from SNP 191998 to 192598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,864 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 201640)] 2025-01-31 09:53:42,975 DEBUG Processing 357/732 atomic regions from SNP 107039 to 107639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,990 DEBUG Processing 641/674 atomic regions from SNP 192298 to 192898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,006 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:43,218 DEBUG Processing 642/674 atomic regions from SNP 192598 to 193198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,227 DEBUG Processing 358/732 atomic regions from SNP 107339 to 107939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,437 DEBUG Processing 643/674 atomic regions from SNP 192898 to 193498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,471 DEBUG Processing 359/732 atomic regions from SNP 107639 to 108239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,654 DEBUG Processing 644/674 atomic regions from SNP 193198 to 193798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,715 DEBUG Processing 360/732 atomic regions from SNP 107939 to 108539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,868 DEBUG Processing 645/674 atomic regions from SNP 193498 to 194098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,980 DEBUG Processing 361/732 atomic regions from SNP 108239 to 108839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,078 DEBUG Processing 646/674 atomic regions from SNP 193798 to 194398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,221 DEBUG Processing 362/732 atomic regions from SNP 108539 to 109139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,289 DEBUG Processing 647/674 atomic regions from SNP 194098 to 194698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,461 DEBUG Processing 363/732 atomic regions from SNP 108839 to 109439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,507 DEBUG Processing 648/674 atomic regions from SNP 194398 to 194998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,693 DEBUG Processing 364/732 atomic regions from SNP 109139 to 109739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,720 DEBUG Processing 649/674 atomic regions from SNP 194698 to 195298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,919 DEBUG Processing 365/732 atomic regions from SNP 109439 to 110039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,935 DEBUG Processing 650/674 atomic regions from SNP 194998 to 195598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,157 DEBUG Processing 651/674 atomic regions from SNP 195298 to 195898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,159 DEBUG Processing 366/732 atomic regions from SNP 109739 to 110339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,382 DEBUG Processing 652/674 atomic regions from SNP 195598 to 196198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,411 DEBUG Processing 367/732 atomic regions from SNP 110039 to 110639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,600 DEBUG Processing 653/674 atomic regions from SNP 195898 to 196498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,660 DEBUG Processing 368/732 atomic regions from SNP 110339 to 110939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,816 DEBUG Processing 654/674 atomic regions from SNP 196198 to 196798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,921 DEBUG Processing 369/732 atomic regions from SNP 110639 to 111239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,037 DEBUG Processing 655/674 atomic regions from SNP 196498 to 197098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,166 DEBUG Processing 370/732 atomic regions from SNP 110939 to 111539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,278 DEBUG Processing 656/674 atomic regions from SNP 196798 to 197398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,409 DEBUG Processing 371/732 atomic regions from SNP 111239 to 111839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,507 DEBUG Processing 657/674 atomic regions from SNP 197098 to 197698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,664 DEBUG Processing 372/732 atomic regions from SNP 111539 to 112139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,734 DEBUG Processing 658/674 atomic regions from SNP 197398 to 197998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,913 DEBUG Processing 373/732 atomic regions from SNP 111839 to 112439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,973 DEBUG Processing 659/674 atomic regions from SNP 197698 to 198298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,146 DEBUG Processing 374/732 atomic regions from SNP 112139 to 112739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,207 DEBUG Processing 660/674 atomic regions from SNP 197998 to 198598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,368 DEBUG Processing 375/732 atomic regions from SNP 112439 to 113039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,435 DEBUG Processing 661/674 atomic regions from SNP 198298 to 198898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,610 DEBUG Processing 376/732 atomic regions from SNP 112739 to 113339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,668 DEBUG Processing 662/674 atomic regions from SNP 198598 to 199198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,859 DEBUG Processing 377/732 atomic regions from SNP 113039 to 113639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,880 DEBUG Processing 663/674 atomic regions from SNP 198898 to 199498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,095 DEBUG Processing 664/674 atomic regions from SNP 199198 to 199798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,108 DEBUG Processing 378/732 atomic regions from SNP 113339 to 113939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,315 DEBUG Processing 665/674 atomic regions from SNP 199498 to 200098 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,359 DEBUG Processing 379/732 atomic regions from SNP 113639 to 114239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,536 DEBUG Processing 666/674 atomic regions from SNP 199798 to 200398 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,586 DEBUG Processing 380/732 atomic regions from SNP 113939 to 114539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,750 DEBUG Processing 667/674 atomic regions from SNP 200098 to 200698 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,803 DEBUG Processing 381/732 atomic regions from SNP 114239 to 114839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,969 DEBUG Processing 668/674 atomic regions from SNP 200398 to 200998 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,039 DEBUG Processing 382/732 atomic regions from SNP 114539 to 115139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,187 DEBUG Processing 669/674 atomic regions from SNP 200698 to 201298 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,279 DEBUG Processing 383/732 atomic regions from SNP 114839 to 115439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,411 DEBUG Processing 670/674 atomic regions from SNP 200998 to 201598 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,515 DEBUG Processing 384/732 atomic regions from SNP 115139 to 115739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,645 DEBUG Processing 671/674 atomic regions from SNP 201298 to 201898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,740 DEBUG Processing 385/732 atomic regions from SNP 115439 to 116039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,867 DEBUG Processing 672/674 atomic regions from SNP 201598 to 202198 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,987 DEBUG Processing 386/732 atomic regions from SNP 115739 to 116339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,082 DEBUG Processing 673/674 atomic regions from SNP 201898 to 202498 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,143 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:53:50,145 DEBUG chr15: Signal quantile: 0.995. signal threshold: 17. Best RMSEA: 0.036 2025-01-31 09:53:50,227 DEBUG Processing 387/732 atomic regions from SNP 116039 to 116639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,301 DEBUG Processing 674/674 atomic regions from SNP 202198 to 202798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,411 DEBUG Segmenting atomic regions: 2025-01-31 09:53:50,431 DEBUG Unique SNPs positions in subchromosome 2: 202799 2025-01-31 09:53:50,472 DEBUG Processing 388/732 atomic regions from SNP 116339 to 116939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,514 DEBUG Processing 1/729 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,713 DEBUG Processing 389/732 atomic regions from SNP 116639 to 117239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,770 DEBUG Processing 2/729 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,953 DEBUG Processing 390/732 atomic regions from SNP 116939 to 117539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,019 DEBUG Processing 3/729 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,182 DEBUG Processing 391/732 atomic regions from SNP 117239 to 117839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,259 DEBUG Processing 4/729 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,415 DEBUG Processing 392/732 atomic regions from SNP 117539 to 118139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,523 DEBUG Processing 5/729 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,641 DEBUG Processing 393/732 atomic regions from SNP 117839 to 118439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,767 DEBUG Processing 6/729 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,865 DEBUG Processing 394/732 atomic regions from SNP 118139 to 118739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,031 DEBUG Processing 7/729 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,062 DEBUG chr15 total SNP count: 181921 2025-01-31 09:53:52,062 DEBUG chr15 length: 104043685 2025-01-31 09:53:52,062 DEBUG ----------------------------------------- 2025-01-31 09:53:52,062 INFO Processing SNPs in chr15 2025-01-31 09:53:52,088 DEBUG Processing 395/732 atomic regions from SNP 118439 to 119039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,256 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 181921)] 2025-01-31 09:53:52,294 DEBUG Processing 8/729 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,316 DEBUG Processing 396/732 atomic regions from SNP 118739 to 119339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,388 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:52,536 DEBUG Processing 9/729 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,536 DEBUG Processing 397/732 atomic regions from SNP 119039 to 119639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,762 DEBUG Processing 398/732 atomic regions from SNP 119339 to 119939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,771 DEBUG Processing 10/729 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,991 DEBUG Processing 399/732 atomic regions from SNP 119639 to 120239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,023 DEBUG Processing 11/729 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,233 DEBUG Processing 400/732 atomic regions from SNP 119939 to 120539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,292 DEBUG Processing 12/729 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,469 DEBUG Processing 401/732 atomic regions from SNP 120239 to 120839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,567 DEBUG Processing 13/729 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,707 DEBUG Processing 402/732 atomic regions from SNP 120539 to 121139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,716 DEBUG Subchromosome time: 185.29448771907482, subchromosome SNPs: 202799 2025-01-31 09:53:53,717 DEBUG Estimated BADs: [0.46, 1.85, 3.70, 1.85, 3.70, 1.85, 0.46, 1.85, 0.46, 0.93, 0.46, 1.85] SNP counts: [180, 39833, 8587, 25868, 23607, 28282, 7749, 5058, 16509, 15252, 12642, 19412] SNP IDs counts: [180, 39833, 8587, 25868, 23607, 28282, 7749, 5058, 16509, 15252, 12642, 19412] Critical gap: 617280bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.13Mbp[0.71Mbp], 29.97Mbp, 34.48Mbp, 51.82Mbp, 65.29Mbp, 81.06Mbp, 85.63Mbp, 88.50Mbp, 97.99Mbp, 106.50Mbp, 113.85Mbp, 124.90Mbp] 2025-01-31 09:53:53,717 DEBUG chr14 time: 185.29498131002765 s 2025-01-31 09:53:53,828 DEBUG Processing 14/729 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,862 DEBUG chr14: Fitting background model for 12 segments 2025-01-31 09:53:53,945 DEBUG Processing 403/732 atomic regions from SNP 120839 to 121439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,069 DEBUG Processing 15/729 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,174 DEBUG Processing 404/732 atomic regions from SNP 121139 to 121739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,306 DEBUG Processing 16/729 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,400 DEBUG Processing 405/732 atomic regions from SNP 121439 to 122039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,556 DEBUG Processing 17/729 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,628 DEBUG Processing 406/732 atomic regions from SNP 121739 to 122339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,809 DEBUG Processing 18/729 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,862 DEBUG Processing 407/732 atomic regions from SNP 122039 to 122639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,068 DEBUG Processing 19/729 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,118 DEBUG Processing 408/732 atomic regions from SNP 122339 to 122939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,313 DEBUG Processing 20/729 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,360 DEBUG Processing 409/732 atomic regions from SNP 122639 to 123239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,563 DEBUG Processing 21/729 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,598 DEBUG Processing 410/732 atomic regions from SNP 122939 to 123539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,822 DEBUG Processing 22/729 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,835 DEBUG Processing 411/732 atomic regions from SNP 123239 to 123839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,069 DEBUG Processing 23/729 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,081 DEBUG Processing 412/732 atomic regions from SNP 123539 to 124139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,293 DEBUG Processing 24/729 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,319 DEBUG Processing 413/732 atomic regions from SNP 123839 to 124439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,505 DEBUG Segmenting atomic regions: 2025-01-31 09:53:56,527 DEBUG Processing 25/729 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,559 DEBUG Processing 414/732 atomic regions from SNP 124139 to 124739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,602 DEBUG Processing 1/685 atomic regions from SNP 0 to 600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,765 DEBUG Processing 26/729 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,802 DEBUG Processing 415/732 atomic regions from SNP 124439 to 125039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,823 DEBUG Processing 2/685 atomic regions from SNP 300 to 900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,002 DEBUG Processing 27/729 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,044 DEBUG Processing 3/685 atomic regions from SNP 600 to 1200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,046 DEBUG Processing 416/732 atomic regions from SNP 124739 to 125339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,235 DEBUG Processing 28/729 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,284 DEBUG Processing 4/685 atomic regions from SNP 900 to 1500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,299 DEBUG Processing 417/732 atomic regions from SNP 125039 to 125639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,467 DEBUG Processing 29/729 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,524 DEBUG Processing 5/685 atomic regions from SNP 1200 to 1800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,542 DEBUG Processing 418/732 atomic regions from SNP 125339 to 125939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,695 DEBUG Processing 30/729 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,761 DEBUG Processing 6/685 atomic regions from SNP 1500 to 2100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,775 DEBUG Processing 419/732 atomic regions from SNP 125639 to 126239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,924 DEBUG Processing 31/729 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,987 DEBUG Processing 7/685 atomic regions from SNP 1800 to 2400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,010 DEBUG Processing 420/732 atomic regions from SNP 125939 to 126539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,148 DEBUG Processing 32/729 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,215 DEBUG Processing 8/685 atomic regions from SNP 2100 to 2700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,248 DEBUG Processing 421/732 atomic regions from SNP 126239 to 126839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,372 DEBUG Processing 33/729 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,444 DEBUG Processing 9/685 atomic regions from SNP 2400 to 3000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,507 DEBUG Processing 422/732 atomic regions from SNP 126539 to 127139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,601 DEBUG Processing 34/729 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,670 DEBUG Processing 10/685 atomic regions from SNP 2700 to 3300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,745 DEBUG Processing 423/732 atomic regions from SNP 126839 to 127439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,843 DEBUG Processing 35/729 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,899 DEBUG Processing 11/685 atomic regions from SNP 3000 to 3600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,993 DEBUG Processing 424/732 atomic regions from SNP 127139 to 127739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,066 DEBUG Processing 36/729 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,119 DEBUG Processing 12/685 atomic regions from SNP 3300 to 3900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,239 DEBUG Processing 425/732 atomic regions from SNP 127439 to 128039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,296 DEBUG Processing 37/729 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,341 DEBUG Processing 13/685 atomic regions from SNP 3600 to 4200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,474 DEBUG Processing 426/732 atomic regions from SNP 127739 to 128339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,529 DEBUG Processing 38/729 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,583 DEBUG Processing 14/685 atomic regions from SNP 3900 to 4500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,703 DEBUG Processing 427/732 atomic regions from SNP 128039 to 128639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,762 DEBUG Processing 39/729 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,800 DEBUG Processing 15/685 atomic regions from SNP 4200 to 4800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,936 DEBUG Processing 428/732 atomic regions from SNP 128339 to 128939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,004 DEBUG Processing 40/729 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,026 DEBUG Processing 16/685 atomic regions from SNP 4500 to 5100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,155 DEBUG Processing 429/732 atomic regions from SNP 128639 to 129239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,246 DEBUG Processing 41/729 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,259 DEBUG Processing 17/685 atomic regions from SNP 4800 to 5400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,380 DEBUG Processing 430/732 atomic regions from SNP 128939 to 129539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,489 DEBUG Processing 42/729 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,491 DEBUG Processing 18/685 atomic regions from SNP 5100 to 5700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,606 DEBUG Processing 431/732 atomic regions from SNP 129239 to 129839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,720 DEBUG Processing 19/685 atomic regions from SNP 5400 to 6000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,730 DEBUG Processing 43/729 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,833 DEBUG Processing 432/732 atomic regions from SNP 129539 to 130139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,940 DEBUG Processing 20/685 atomic regions from SNP 5700 to 6300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,963 DEBUG Processing 44/729 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,060 DEBUG Processing 433/732 atomic regions from SNP 129839 to 130439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,169 DEBUG Processing 21/685 atomic regions from SNP 6000 to 6600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,197 DEBUG Processing 45/729 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,286 DEBUG Processing 434/732 atomic regions from SNP 130139 to 130739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,385 DEBUG Processing 22/685 atomic regions from SNP 6300 to 6900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,428 DEBUG Processing 46/729 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,506 DEBUG Processing 435/732 atomic regions from SNP 130439 to 131039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,601 DEBUG Processing 23/685 atomic regions from SNP 6600 to 7200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,658 DEBUG Processing 47/729 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,730 DEBUG Processing 436/732 atomic regions from SNP 130739 to 131339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,819 DEBUG Processing 24/685 atomic regions from SNP 6900 to 7500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,911 DEBUG Processing 48/729 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,967 DEBUG Processing 437/732 atomic regions from SNP 131039 to 131639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,042 DEBUG Processing 25/685 atomic regions from SNP 7200 to 7800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,147 DEBUG Processing 49/729 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,201 DEBUG Processing 438/732 atomic regions from SNP 131339 to 131939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,261 DEBUG Processing 26/685 atomic regions from SNP 7500 to 8100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,384 DEBUG Processing 50/729 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,451 DEBUG Processing 439/732 atomic regions from SNP 131639 to 132239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,482 DEBUG Processing 27/685 atomic regions from SNP 7800 to 8400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,620 DEBUG Processing 51/729 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,702 DEBUG Processing 440/732 atomic regions from SNP 131939 to 132539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,706 DEBUG Processing 28/685 atomic regions from SNP 8100 to 8700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,845 DEBUG Processing 52/729 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,928 DEBUG Processing 29/685 atomic regions from SNP 8400 to 9000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,943 DEBUG Processing 441/732 atomic regions from SNP 132239 to 132839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,070 DEBUG Processing 53/729 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,142 DEBUG Processing 30/685 atomic regions from SNP 8700 to 9300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,170 DEBUG Processing 442/732 atomic regions from SNP 132539 to 133139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,288 DEBUG Processing 54/729 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,357 DEBUG Processing 31/685 atomic regions from SNP 9000 to 9600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,396 DEBUG Processing 443/732 atomic regions from SNP 132839 to 133439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,514 DEBUG Processing 55/729 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,578 DEBUG Processing 32/685 atomic regions from SNP 9300 to 9900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,641 DEBUG Processing 444/732 atomic regions from SNP 133139 to 133739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,750 DEBUG Processing 56/729 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,789 DEBUG Processing 33/685 atomic regions from SNP 9600 to 10200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,866 DEBUG Processing 445/732 atomic regions from SNP 133439 to 134039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,957 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:54:03,973 DEBUG Processing 57/729 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,013 DEBUG Processing 34/685 atomic regions from SNP 9900 to 10500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,093 DEBUG Processing 446/732 atomic regions from SNP 133739 to 134339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,200 DEBUG Processing 58/729 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,243 DEBUG Processing 35/685 atomic regions from SNP 10200 to 10800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,318 DEBUG Processing 447/732 atomic regions from SNP 134039 to 134639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,428 DEBUG Processing 59/729 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,472 DEBUG Processing 36/685 atomic regions from SNP 10500 to 11100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,539 DEBUG Processing 448/732 atomic regions from SNP 134339 to 134939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,658 DEBUG Processing 60/729 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,693 DEBUG Processing 37/685 atomic regions from SNP 10800 to 11400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,763 DEBUG Processing 449/732 atomic regions from SNP 134639 to 135239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,893 DEBUG Processing 61/729 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,915 DEBUG Processing 38/685 atomic regions from SNP 11100 to 11700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,988 DEBUG Processing 450/732 atomic regions from SNP 134939 to 135539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,130 DEBUG Processing 62/729 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,140 DEBUG Processing 39/685 atomic regions from SNP 11400 to 12000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,206 DEBUG Processing 451/732 atomic regions from SNP 135239 to 135839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,366 DEBUG Processing 40/685 atomic regions from SNP 11700 to 12300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,366 DEBUG Processing 63/729 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,428 DEBUG Processing 452/732 atomic regions from SNP 135539 to 136139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,586 DEBUG Processing 41/685 atomic regions from SNP 12000 to 12600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,601 DEBUG Processing 64/729 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,652 DEBUG Processing 453/732 atomic regions from SNP 135839 to 136439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,804 DEBUG Processing 42/685 atomic regions from SNP 12300 to 12900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,833 DEBUG Processing 65/729 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,876 DEBUG Processing 454/732 atomic regions from SNP 136139 to 136739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,025 DEBUG Processing 43/685 atomic regions from SNP 12600 to 13200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,065 DEBUG Processing 66/729 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,107 DEBUG Processing 455/732 atomic regions from SNP 136439 to 137039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,238 DEBUG Processing 44/685 atomic regions from SNP 12900 to 13500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,295 DEBUG Processing 67/729 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,349 DEBUG Processing 456/732 atomic regions from SNP 136739 to 137339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,454 DEBUG Processing 45/685 atomic regions from SNP 13200 to 13800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,525 DEBUG Processing 68/729 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,598 DEBUG Processing 457/732 atomic regions from SNP 137039 to 137639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,677 DEBUG Processing 46/685 atomic regions from SNP 13500 to 14100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,753 DEBUG Processing 69/729 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,842 DEBUG Processing 458/732 atomic regions from SNP 137339 to 137939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,896 DEBUG Processing 47/685 atomic regions from SNP 13800 to 14400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,976 DEBUG Processing 70/729 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,086 DEBUG Processing 459/732 atomic regions from SNP 137639 to 138239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,115 DEBUG Processing 48/685 atomic regions from SNP 14100 to 14700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,199 DEBUG Processing 71/729 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,324 DEBUG Processing 460/732 atomic regions from SNP 137939 to 138539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,340 DEBUG Processing 49/685 atomic regions from SNP 14400 to 15000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,425 DEBUG Processing 72/729 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,566 DEBUG Processing 50/685 atomic regions from SNP 14700 to 15300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,577 DEBUG Processing 461/732 atomic regions from SNP 138239 to 138839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,667 DEBUG Processing 73/729 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,801 DEBUG Processing 51/685 atomic regions from SNP 15000 to 15600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,811 DEBUG Processing 462/732 atomic regions from SNP 138539 to 139139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,894 DEBUG Processing 74/729 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,040 DEBUG Processing 52/685 atomic regions from SNP 15300 to 15900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,045 DEBUG Segmenting atomic regions: 2025-01-31 09:54:08,047 DEBUG Processing 463/732 atomic regions from SNP 138839 to 139439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,120 DEBUG Processing 75/729 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,138 DEBUG Processing 1/671 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,273 DEBUG Processing 464/732 atomic regions from SNP 139139 to 139739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,277 DEBUG Processing 53/685 atomic regions from SNP 15600 to 16200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,344 DEBUG Processing 76/729 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,356 DEBUG Processing 2/671 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,501 DEBUG Processing 465/732 atomic regions from SNP 139439 to 140039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,511 DEBUG Processing 54/685 atomic regions from SNP 15900 to 16500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,570 DEBUG Processing 77/729 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,577 DEBUG Processing 3/671 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,726 DEBUG Processing 466/732 atomic regions from SNP 139739 to 140339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,746 DEBUG Processing 55/685 atomic regions from SNP 16200 to 16800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,799 DEBUG Processing 78/729 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,799 DEBUG Processing 4/671 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,943 DEBUG Processing 467/732 atomic regions from SNP 140039 to 140639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,974 DEBUG Processing 56/685 atomic regions from SNP 16500 to 17100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,026 DEBUG Processing 79/729 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,032 DEBUG Processing 5/671 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,161 DEBUG Processing 468/732 atomic regions from SNP 140339 to 140939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,200 DEBUG Processing 57/685 atomic regions from SNP 16800 to 17400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,254 DEBUG Processing 80/729 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,273 DEBUG Processing 6/671 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,383 DEBUG Processing 469/732 atomic regions from SNP 140639 to 141239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,427 DEBUG Processing 58/685 atomic regions from SNP 17100 to 17700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,491 DEBUG Processing 81/729 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,511 DEBUG Processing 7/671 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,602 DEBUG Processing 470/732 atomic regions from SNP 140939 to 141539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,638 DEBUG Processing 59/685 atomic regions from SNP 17400 to 18000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,723 DEBUG Processing 82/729 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,748 DEBUG Processing 8/671 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,823 DEBUG Processing 471/732 atomic regions from SNP 141239 to 141839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,870 DEBUG Processing 60/685 atomic regions from SNP 17700 to 18300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,952 DEBUG Processing 83/729 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,971 DEBUG Processing 9/671 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,055 DEBUG Processing 472/732 atomic regions from SNP 141539 to 142139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,104 DEBUG Processing 61/685 atomic regions from SNP 18000 to 18600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,189 DEBUG Processing 84/729 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,198 DEBUG Processing 10/671 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,280 DEBUG Processing 473/732 atomic regions from SNP 141839 to 142439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,332 DEBUG Processing 62/685 atomic regions from SNP 18300 to 18900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,423 DEBUG Processing 85/729 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,436 DEBUG Processing 11/671 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,515 DEBUG Processing 474/732 atomic regions from SNP 142139 to 142739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,557 DEBUG Processing 63/685 atomic regions from SNP 18600 to 19200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,650 DEBUG Processing 86/729 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,669 DEBUG Processing 12/671 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,742 DEBUG Processing 475/732 atomic regions from SNP 142439 to 143039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,772 DEBUG Processing 64/685 atomic regions from SNP 18900 to 19500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,881 DEBUG Processing 87/729 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,885 DEBUG Processing 13/671 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,970 DEBUG Processing 476/732 atomic regions from SNP 142739 to 143339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,985 DEBUG Processing 65/685 atomic regions from SNP 19200 to 19800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,099 DEBUG Processing 14/671 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,104 DEBUG Processing 88/729 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,194 DEBUG Processing 66/685 atomic regions from SNP 19500 to 20100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,194 DEBUG Processing 477/732 atomic regions from SNP 143039 to 143639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,308 DEBUG Processing 15/671 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,323 DEBUG Processing 89/729 atomic regions from SNP 26488 to 27089 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,411 DEBUG Processing 67/685 atomic regions from SNP 19800 to 20400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,421 DEBUG Processing 478/732 atomic regions from SNP 143339 to 143939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,513 DEBUG Processing 16/671 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,544 DEBUG Processing 90/729 atomic regions from SNP 26789 to 27390 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,626 DEBUG Processing 68/685 atomic regions from SNP 20100 to 20700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,647 DEBUG Processing 479/732 atomic regions from SNP 143639 to 144239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,722 DEBUG Processing 17/671 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,766 DEBUG Processing 91/729 atomic regions from SNP 27090 to 27691 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,847 DEBUG Processing 69/685 atomic regions from SNP 20400 to 21000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,881 DEBUG Processing 480/732 atomic regions from SNP 143939 to 144539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,938 DEBUG Processing 18/671 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,988 DEBUG Processing 92/729 atomic regions from SNP 27391 to 27992 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,069 DEBUG Processing 70/685 atomic regions from SNP 20700 to 21300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,116 DEBUG Processing 481/732 atomic regions from SNP 144239 to 144839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,154 DEBUG Processing 19/671 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,209 DEBUG Processing 93/729 atomic regions from SNP 27692 to 28293 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,283 DEBUG Processing 71/685 atomic regions from SNP 21000 to 21600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,349 DEBUG Processing 482/732 atomic regions from SNP 144539 to 145139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,374 DEBUG Processing 20/671 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,431 DEBUG Processing 94/729 atomic regions from SNP 27993 to 28594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,493 DEBUG Processing 72/685 atomic regions from SNP 21300 to 21900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,577 DEBUG Processing 483/732 atomic regions from SNP 144839 to 145439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,591 DEBUG Processing 21/671 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,656 DEBUG Processing 95/729 atomic regions from SNP 28294 to 28895 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,703 DEBUG Processing 73/685 atomic regions from SNP 21600 to 22200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,806 DEBUG Processing 484/732 atomic regions from SNP 145139 to 145739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,811 DEBUG Processing 22/671 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,885 DEBUG Processing 96/729 atomic regions from SNP 28595 to 29196 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,919 DEBUG Processing 74/685 atomic regions from SNP 21900 to 22500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,025 DEBUG Processing 23/671 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,031 DEBUG Processing 485/732 atomic regions from SNP 145439 to 146039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,107 DEBUG Processing 97/729 atomic regions from SNP 28896 to 29497 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,134 DEBUG Processing 75/685 atomic regions from SNP 22200 to 22800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,258 DEBUG Processing 24/671 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,264 DEBUG Processing 486/732 atomic regions from SNP 145739 to 146339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,338 DEBUG Processing 98/729 atomic regions from SNP 29197 to 29798 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,353 DEBUG Processing 76/685 atomic regions from SNP 22500 to 23100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,478 DEBUG Processing 25/671 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,493 DEBUG Processing 487/732 atomic regions from SNP 146039 to 146639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,567 DEBUG Processing 99/729 atomic regions from SNP 29498 to 30099 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,572 DEBUG Processing 77/685 atomic regions from SNP 22800 to 23400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,691 DEBUG Processing 26/671 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,720 DEBUG Processing 488/732 atomic regions from SNP 146339 to 146939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,783 DEBUG Processing 78/685 atomic regions from SNP 23100 to 23700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,798 DEBUG Processing 100/729 atomic regions from SNP 29799 to 30400 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,903 DEBUG Processing 27/671 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,947 DEBUG Processing 489/732 atomic regions from SNP 146639 to 147239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,999 DEBUG Processing 79/685 atomic regions from SNP 23400 to 24000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,028 DEBUG Processing 101/729 atomic regions from SNP 30100 to 30701 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,090 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:54:14,092 DEBUG chr16: Signal quantile: 0.994. signal threshold: 13. Best RMSEA: 0.046 2025-01-31 09:54:14,115 DEBUG Processing 28/671 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,175 DEBUG Processing 490/732 atomic regions from SNP 146939 to 147539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,216 DEBUG Processing 80/685 atomic regions from SNP 23700 to 24300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,265 DEBUG Processing 102/729 atomic regions from SNP 30401 to 31002 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,327 DEBUG Processing 29/671 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,400 DEBUG Processing 491/732 atomic regions from SNP 147239 to 147839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,434 DEBUG Processing 81/685 atomic regions from SNP 24000 to 24600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,507 DEBUG Processing 103/729 atomic regions from SNP 30702 to 31303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,544 DEBUG Processing 30/671 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,634 DEBUG Processing 492/732 atomic regions from SNP 147539 to 148139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,649 DEBUG Processing 82/685 atomic regions from SNP 24300 to 24900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,742 DEBUG Processing 104/729 atomic regions from SNP 31003 to 31604 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,757 DEBUG Processing 31/671 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,860 DEBUG Processing 493/732 atomic regions from SNP 147839 to 148439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,865 DEBUG Processing 83/685 atomic regions from SNP 24600 to 25200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,972 DEBUG Processing 32/671 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,972 DEBUG Processing 105/729 atomic regions from SNP 31304 to 31905 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,003 DEBUG Segmenting atomic regions: 2025-01-31 09:54:15,077 DEBUG Processing 84/685 atomic regions from SNP 24900 to 25500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,087 DEBUG Processing 1/605 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,087 DEBUG Processing 494/732 atomic regions from SNP 148139 to 148739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,200 DEBUG Processing 33/671 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,208 DEBUG Processing 106/729 atomic regions from SNP 31605 to 32206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,300 DEBUG Processing 2/605 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,304 DEBUG Processing 85/685 atomic regions from SNP 25200 to 25800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,320 DEBUG Processing 495/732 atomic regions from SNP 148439 to 149039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,432 DEBUG Processing 34/671 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,443 DEBUG Processing 107/729 atomic regions from SNP 31906 to 32507 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,510 DEBUG Processing 3/605 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,522 DEBUG Processing 86/685 atomic regions from SNP 25500 to 26100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,550 DEBUG Processing 496/732 atomic regions from SNP 148739 to 149339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,657 DEBUG Processing 35/671 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,680 DEBUG Processing 108/729 atomic regions from SNP 32207 to 32808 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,716 DEBUG Processing 4/605 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,745 DEBUG Processing 87/685 atomic regions from SNP 25800 to 26400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,788 DEBUG Processing 497/732 atomic regions from SNP 149039 to 149639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,879 DEBUG Processing 36/671 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,901 DEBUG chr16 total SNP count: 170559 2025-01-31 09:54:15,902 DEBUG chr16 length: 98207768 2025-01-31 09:54:15,902 DEBUG ----------------------------------------- 2025-01-31 09:54:15,902 INFO Processing SNPs in chr16 2025-01-31 09:54:15,911 DEBUG Processing 109/729 atomic regions from SNP 32508 to 33109 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,927 DEBUG Processing 5/605 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,964 DEBUG Processing 88/685 atomic regions from SNP 26100 to 26700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,015 DEBUG Processing 498/732 atomic regions from SNP 149339 to 149939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,081 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 170559)] 2025-01-31 09:54:16,093 DEBUG Processing 37/671 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,137 DEBUG Processing 6/605 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,139 DEBUG Processing 110/729 atomic regions from SNP 32809 to 33410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,185 DEBUG Processing 89/685 atomic regions from SNP 26400 to 27000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,203 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:16,237 DEBUG Processing 499/732 atomic regions from SNP 149639 to 150239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,303 DEBUG Processing 38/671 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,342 DEBUG Processing 7/605 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,366 DEBUG Processing 111/729 atomic regions from SNP 33110 to 33711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,403 DEBUG Processing 90/685 atomic regions from SNP 26700 to 27300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,463 DEBUG Processing 500/732 atomic regions from SNP 149939 to 150539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,517 DEBUG Processing 39/671 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,550 DEBUG Processing 8/605 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,593 DEBUG Processing 112/729 atomic regions from SNP 33411 to 34012 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,623 DEBUG Processing 91/685 atomic regions from SNP 27000 to 27600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,694 DEBUG Processing 501/732 atomic regions from SNP 150239 to 150839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,733 DEBUG Processing 40/671 atomic regions from SNP 11739 to 12339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,755 DEBUG Processing 9/605 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,819 DEBUG Processing 113/729 atomic regions from SNP 33712 to 34313 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,839 DEBUG Processing 92/685 atomic regions from SNP 27300 to 27900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,926 DEBUG Processing 502/732 atomic regions from SNP 150539 to 151139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,951 DEBUG Processing 41/671 atomic regions from SNP 12039 to 12639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,964 DEBUG Processing 10/605 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,045 DEBUG Processing 114/729 atomic regions from SNP 34013 to 34614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,054 DEBUG Processing 93/685 atomic regions from SNP 27600 to 28200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,159 DEBUG Processing 503/732 atomic regions from SNP 150839 to 151439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,172 DEBUG Processing 42/671 atomic regions from SNP 12339 to 12939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,174 DEBUG Processing 11/605 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,265 DEBUG Processing 94/685 atomic regions from SNP 27900 to 28500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,268 DEBUG Processing 115/729 atomic regions from SNP 34314 to 34915 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,388 DEBUG Processing 12/605 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,390 DEBUG Processing 504/732 atomic regions from SNP 151139 to 151739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,392 DEBUG Processing 43/671 atomic regions from SNP 12639 to 13239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,497 DEBUG Processing 95/685 atomic regions from SNP 28200 to 28800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,506 DEBUG Processing 116/729 atomic regions from SNP 34615 to 35216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,607 DEBUG Processing 13/605 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,611 DEBUG Processing 44/671 atomic regions from SNP 12939 to 13539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,623 DEBUG Processing 505/732 atomic regions from SNP 151439 to 152039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,704 DEBUG Processing 96/685 atomic regions from SNP 28500 to 29100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,735 DEBUG Processing 117/729 atomic regions from SNP 34916 to 35517 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,819 DEBUG Processing 14/605 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,836 DEBUG Processing 45/671 atomic regions from SNP 13239 to 13839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,858 DEBUG Processing 506/732 atomic regions from SNP 151739 to 152339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,918 DEBUG Processing 97/685 atomic regions from SNP 28800 to 29400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,962 DEBUG Processing 118/729 atomic regions from SNP 35217 to 35818 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,025 DEBUG Processing 15/605 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,055 DEBUG Processing 46/671 atomic regions from SNP 13539 to 14139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,103 DEBUG Processing 507/732 atomic regions from SNP 152039 to 152639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,133 DEBUG Processing 98/685 atomic regions from SNP 29100 to 29700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,196 DEBUG Processing 119/729 atomic regions from SNP 35518 to 36119 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,233 DEBUG Processing 16/605 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,278 DEBUG Processing 47/671 atomic regions from SNP 13839 to 14439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,341 DEBUG Processing 508/732 atomic regions from SNP 152339 to 152939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,355 DEBUG Processing 99/685 atomic regions from SNP 29400 to 30000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,423 DEBUG Processing 120/729 atomic regions from SNP 35819 to 36420 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,433 DEBUG Processing 17/605 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,497 DEBUG Processing 48/671 atomic regions from SNP 14139 to 14739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,576 DEBUG Processing 509/732 atomic regions from SNP 152639 to 153239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,585 DEBUG Processing 100/685 atomic regions from SNP 29700 to 30300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,636 DEBUG Processing 18/605 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,653 DEBUG Processing 121/729 atomic regions from SNP 36120 to 36721 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,711 DEBUG Processing 49/671 atomic regions from SNP 14439 to 15039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,811 DEBUG Processing 510/732 atomic regions from SNP 152939 to 153539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,816 DEBUG Processing 101/685 atomic regions from SNP 30000 to 30600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,843 DEBUG Processing 19/605 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,880 DEBUG Processing 122/729 atomic regions from SNP 36421 to 37022 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,922 DEBUG Processing 50/671 atomic regions from SNP 14739 to 15339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,036 DEBUG Processing 102/685 atomic regions from SNP 30300 to 30900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,042 DEBUG Processing 511/732 atomic regions from SNP 153239 to 153839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,053 DEBUG Processing 20/605 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,107 DEBUG Processing 123/729 atomic regions from SNP 36722 to 37323 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,131 DEBUG Processing 51/671 atomic regions from SNP 15039 to 15639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,257 DEBUG Processing 103/685 atomic regions from SNP 30600 to 31200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,261 DEBUG Processing 21/605 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,275 DEBUG Processing 512/732 atomic regions from SNP 153539 to 154139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,334 DEBUG Processing 124/729 atomic regions from SNP 37023 to 37624 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,340 DEBUG Processing 52/671 atomic regions from SNP 15339 to 15939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,470 DEBUG Processing 22/605 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,479 DEBUG Processing 104/685 atomic regions from SNP 30900 to 31500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,505 DEBUG Processing 513/732 atomic regions from SNP 153839 to 154439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,556 DEBUG Processing 53/671 atomic regions from SNP 15639 to 16239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,564 DEBUG Processing 125/729 atomic regions from SNP 37324 to 37925 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,677 DEBUG Processing 23/605 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,724 DEBUG Processing 105/685 atomic regions from SNP 31200 to 31800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,738 DEBUG Processing 514/732 atomic regions from SNP 154139 to 154739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,774 DEBUG Processing 54/671 atomic regions from SNP 15939 to 16539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,795 DEBUG Processing 126/729 atomic regions from SNP 37625 to 38226 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,886 DEBUG Processing 24/605 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,961 DEBUG Processing 106/685 atomic regions from SNP 31500 to 32100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,982 DEBUG Processing 515/732 atomic regions from SNP 154439 to 155039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,990 DEBUG Processing 55/671 atomic regions from SNP 16239 to 16839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,026 DEBUG Processing 127/729 atomic regions from SNP 37926 to 38527 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,091 DEBUG Processing 25/605 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,190 DEBUG Processing 107/685 atomic regions from SNP 31800 to 32400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,213 DEBUG Processing 56/671 atomic regions from SNP 16539 to 17139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,217 DEBUG Processing 516/732 atomic regions from SNP 154739 to 155339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,265 DEBUG Processing 128/729 atomic regions from SNP 38227 to 38828 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,305 DEBUG Processing 26/605 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,426 DEBUG Processing 57/671 atomic regions from SNP 16839 to 17439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,435 DEBUG Processing 108/685 atomic regions from SNP 32100 to 32700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,442 DEBUG Processing 517/732 atomic regions from SNP 155039 to 155639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,496 DEBUG Processing 129/729 atomic regions from SNP 38528 to 39129 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,515 DEBUG Processing 27/605 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,637 DEBUG Processing 58/671 atomic regions from SNP 17139 to 17739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,669 DEBUG Processing 518/732 atomic regions from SNP 155339 to 155939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,688 DEBUG Processing 109/685 atomic regions from SNP 32400 to 33000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,730 DEBUG Processing 130/729 atomic regions from SNP 38829 to 39430 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,731 DEBUG Processing 28/605 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,848 DEBUG Processing 59/671 atomic regions from SNP 17439 to 18039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,897 DEBUG Processing 519/732 atomic regions from SNP 155639 to 156239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,931 DEBUG Processing 110/685 atomic regions from SNP 32700 to 33300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,947 DEBUG Processing 29/605 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,967 DEBUG Processing 131/729 atomic regions from SNP 39130 to 39731 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,063 DEBUG Processing 60/671 atomic regions from SNP 17739 to 18339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,128 DEBUG Processing 520/732 atomic regions from SNP 155939 to 156539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,153 DEBUG Processing 111/685 atomic regions from SNP 33000 to 33600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,161 DEBUG Processing 30/605 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,206 DEBUG Processing 132/729 atomic regions from SNP 39431 to 40032 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,280 DEBUG Processing 61/671 atomic regions from SNP 18039 to 18639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,357 DEBUG Processing 521/732 atomic regions from SNP 156239 to 156839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,371 DEBUG Processing 31/605 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,377 DEBUG Processing 112/685 atomic regions from SNP 33300 to 33900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,444 DEBUG Processing 133/729 atomic regions from SNP 39732 to 40333 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,495 DEBUG Processing 62/671 atomic regions from SNP 18339 to 18939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,582 DEBUG Processing 32/605 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,589 DEBUG Processing 522/732 atomic regions from SNP 156539 to 157139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,603 DEBUG Processing 113/685 atomic regions from SNP 33600 to 34200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,684 DEBUG Processing 134/729 atomic regions from SNP 40033 to 40634 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,714 DEBUG Processing 63/671 atomic regions from SNP 18639 to 19239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,808 DEBUG Processing 33/605 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,820 DEBUG Processing 523/732 atomic regions from SNP 156839 to 157439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,824 DEBUG Processing 114/685 atomic regions from SNP 33900 to 34500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,934 DEBUG Processing 64/671 atomic regions from SNP 18939 to 19539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,934 DEBUG Processing 135/729 atomic regions from SNP 40334 to 40935 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,029 DEBUG Processing 34/605 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,042 DEBUG Processing 115/685 atomic regions from SNP 34200 to 34800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,051 DEBUG Processing 524/732 atomic regions from SNP 157139 to 157739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,151 DEBUG Processing 65/671 atomic regions from SNP 19239 to 19839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,170 DEBUG Processing 136/729 atomic regions from SNP 40635 to 41236 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,253 DEBUG Processing 35/605 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,281 DEBUG Processing 116/685 atomic regions from SNP 34500 to 35100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,285 DEBUG Processing 525/732 atomic regions from SNP 157439 to 158039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,371 DEBUG Processing 66/671 atomic regions from SNP 19539 to 20139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,405 DEBUG Processing 137/729 atomic regions from SNP 40936 to 41537 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,479 DEBUG Processing 36/605 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,517 DEBUG Processing 526/732 atomic regions from SNP 157739 to 158339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,542 DEBUG Processing 117/685 atomic regions from SNP 34800 to 35400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,595 DEBUG Processing 67/671 atomic regions from SNP 19839 to 20439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,647 DEBUG Processing 138/729 atomic regions from SNP 41237 to 41838 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,699 DEBUG Processing 37/605 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,756 DEBUG Processing 527/732 atomic regions from SNP 158039 to 158639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,802 DEBUG Processing 118/685 atomic regions from SNP 35100 to 35700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,824 DEBUG Processing 68/671 atomic regions from SNP 20139 to 20739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,891 DEBUG Processing 139/729 atomic regions from SNP 41538 to 42139 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,919 DEBUG Processing 38/605 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,993 DEBUG Processing 528/732 atomic regions from SNP 158339 to 158939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,047 DEBUG Processing 69/671 atomic regions from SNP 20439 to 21039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,049 DEBUG Processing 119/685 atomic regions from SNP 35400 to 36000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,134 DEBUG Processing 140/729 atomic regions from SNP 41839 to 42440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,137 DEBUG Processing 39/605 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,238 DEBUG Processing 529/732 atomic regions from SNP 158639 to 159239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,275 DEBUG Processing 70/671 atomic regions from SNP 20739 to 21339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,297 DEBUG Processing 120/685 atomic regions from SNP 35700 to 36300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,355 DEBUG Processing 40/605 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,376 DEBUG Processing 141/729 atomic regions from SNP 42140 to 42741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,480 DEBUG Processing 530/732 atomic regions from SNP 158939 to 159539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,506 DEBUG Processing 71/671 atomic regions from SNP 21039 to 21639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,544 DEBUG Processing 121/685 atomic regions from SNP 36000 to 36600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,574 DEBUG Processing 41/605 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,618 DEBUG Processing 142/729 atomic regions from SNP 42441 to 43042 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,715 DEBUG Processing 531/732 atomic regions from SNP 159239 to 159839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,747 DEBUG Processing 72/671 atomic regions from SNP 21339 to 21939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,792 DEBUG Processing 42/605 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,819 DEBUG Processing 122/685 atomic regions from SNP 36300 to 36900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,863 DEBUG Processing 143/729 atomic regions from SNP 42742 to 43343 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,951 DEBUG Processing 532/732 atomic regions from SNP 159539 to 160139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,968 DEBUG Processing 73/671 atomic regions from SNP 21639 to 22239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,010 DEBUG Processing 43/605 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,077 DEBUG Processing 123/685 atomic regions from SNP 36600 to 37200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,104 DEBUG Processing 144/729 atomic regions from SNP 43043 to 43644 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,186 DEBUG Processing 533/732 atomic regions from SNP 159839 to 160439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,192 DEBUG Processing 74/671 atomic regions from SNP 21939 to 22539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,229 DEBUG Processing 44/605 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,345 DEBUG Processing 124/685 atomic regions from SNP 36900 to 37500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,347 DEBUG Processing 145/729 atomic regions from SNP 43344 to 43945 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,416 DEBUG Processing 75/671 atomic regions from SNP 22239 to 22839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,427 DEBUG Processing 534/732 atomic regions from SNP 160139 to 160739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,445 DEBUG Processing 45/605 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,589 DEBUG Processing 146/729 atomic regions from SNP 43645 to 44246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,600 DEBUG Processing 125/685 atomic regions from SNP 37200 to 37800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,640 DEBUG Processing 76/671 atomic regions from SNP 22539 to 23139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,658 DEBUG Processing 46/605 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,667 DEBUG Processing 535/732 atomic regions from SNP 160439 to 161039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,832 DEBUG Processing 147/729 atomic regions from SNP 43946 to 44547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,855 DEBUG Processing 126/685 atomic regions from SNP 37500 to 38100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,868 DEBUG Processing 77/671 atomic regions from SNP 22839 to 23439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,877 DEBUG Processing 47/605 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,909 DEBUG Processing 536/732 atomic regions from SNP 160739 to 161339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,080 DEBUG Processing 148/729 atomic regions from SNP 44247 to 44848 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,101 DEBUG Processing 78/671 atomic regions from SNP 23139 to 23739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,102 DEBUG Processing 48/605 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,109 DEBUG Processing 127/685 atomic regions from SNP 37800 to 38400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,154 DEBUG Processing 537/732 atomic regions from SNP 161039 to 161639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,332 DEBUG Processing 49/605 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,339 DEBUG Processing 79/671 atomic regions from SNP 23439 to 24039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,342 DEBUG Processing 149/729 atomic regions from SNP 44548 to 45149 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,352 DEBUG Processing 128/685 atomic regions from SNP 38100 to 38700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,411 DEBUG Processing 538/732 atomic regions from SNP 161339 to 161939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,549 DEBUG Processing 50/605 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,566 DEBUG Processing 80/671 atomic regions from SNP 23739 to 24339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,586 DEBUG Processing 129/685 atomic regions from SNP 38400 to 39000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,587 DEBUG Processing 150/729 atomic regions from SNP 44849 to 45450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,658 DEBUG Processing 539/732 atomic regions from SNP 161639 to 162239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,761 DEBUG Processing 51/605 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,789 DEBUG Processing 81/671 atomic regions from SNP 24039 to 24639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,815 DEBUG Processing 130/685 atomic regions from SNP 38700 to 39300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,829 DEBUG Processing 151/729 atomic regions from SNP 45150 to 45751 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,907 DEBUG Processing 540/732 atomic regions from SNP 161939 to 162539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,981 DEBUG Processing 52/605 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,029 DEBUG Processing 82/671 atomic regions from SNP 24339 to 24939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,044 DEBUG Processing 131/685 atomic regions from SNP 39000 to 39600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,070 DEBUG Processing 152/729 atomic regions from SNP 45451 to 46052 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,165 DEBUG Processing 541/732 atomic regions from SNP 162239 to 162839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,219 DEBUG Processing 53/605 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,265 DEBUG Processing 83/671 atomic regions from SNP 24639 to 25239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,269 DEBUG Processing 132/685 atomic regions from SNP 39300 to 39900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,302 DEBUG Processing 153/729 atomic regions from SNP 45752 to 46353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,405 DEBUG Processing 542/732 atomic regions from SNP 162539 to 163139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,461 DEBUG Processing 54/605 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,496 DEBUG Processing 133/685 atomic regions from SNP 39600 to 40200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,498 DEBUG Processing 84/671 atomic regions from SNP 24939 to 25539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,536 DEBUG Processing 154/729 atomic regions from SNP 46053 to 46654 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,642 DEBUG Processing 543/732 atomic regions from SNP 162839 to 163439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,709 DEBUG Processing 55/605 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,727 DEBUG Processing 134/685 atomic regions from SNP 39900 to 40500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,732 DEBUG Processing 85/671 atomic regions from SNP 25239 to 25839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,769 DEBUG Processing 155/729 atomic regions from SNP 46354 to 46955 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,881 DEBUG Processing 544/732 atomic regions from SNP 163139 to 163739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,956 DEBUG Processing 56/605 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,965 DEBUG Processing 135/685 atomic regions from SNP 40200 to 40800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,972 DEBUG Processing 86/671 atomic regions from SNP 25539 to 26139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,011 DEBUG Processing 156/729 atomic regions from SNP 46655 to 47256 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,117 DEBUG Processing 545/732 atomic regions from SNP 163439 to 164039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,193 DEBUG Processing 57/605 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,200 DEBUG Processing 136/685 atomic regions from SNP 40500 to 41100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,221 DEBUG Processing 87/671 atomic regions from SNP 25839 to 26439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,254 DEBUG Processing 157/729 atomic regions from SNP 46956 to 47557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,350 DEBUG Processing 546/732 atomic regions from SNP 163739 to 164339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,429 DEBUG Processing 58/605 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,436 DEBUG Processing 137/685 atomic regions from SNP 40800 to 41400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,469 DEBUG Processing 88/671 atomic regions from SNP 26139 to 26739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,506 DEBUG Processing 158/729 atomic regions from SNP 47257 to 47858 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,580 DEBUG Processing 547/732 atomic regions from SNP 164039 to 164639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,654 DEBUG Processing 59/605 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,672 DEBUG Processing 138/685 atomic regions from SNP 41100 to 41700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,710 DEBUG Processing 89/671 atomic regions from SNP 26439 to 27039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,753 DEBUG Processing 159/729 atomic regions from SNP 47558 to 48159 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,816 DEBUG Processing 548/732 atomic regions from SNP 164339 to 164939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,863 DEBUG Processing 60/605 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,910 DEBUG Processing 139/685 atomic regions from SNP 41400 to 42000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,948 DEBUG Processing 90/671 atomic regions from SNP 26739 to 27339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,018 DEBUG Processing 160/729 atomic regions from SNP 47859 to 48460 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,057 DEBUG Processing 549/732 atomic regions from SNP 164639 to 165239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,088 DEBUG Processing 61/605 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,164 DEBUG Processing 140/685 atomic regions from SNP 41700 to 42300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,194 DEBUG Processing 91/671 atomic regions from SNP 27039 to 27639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,270 DEBUG Processing 161/729 atomic regions from SNP 48160 to 48761 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,297 DEBUG Processing 550/732 atomic regions from SNP 164939 to 165539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,301 DEBUG Processing 62/605 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,391 DEBUG Processing 141/685 atomic regions from SNP 42000 to 42600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,419 DEBUG Processing 92/671 atomic regions from SNP 27339 to 27939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,514 DEBUG Processing 162/729 atomic regions from SNP 48461 to 49062 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,520 DEBUG Processing 63/605 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,540 DEBUG Processing 551/732 atomic regions from SNP 165239 to 165839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,619 DEBUG Processing 142/685 atomic regions from SNP 42300 to 42900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,643 DEBUG Processing 93/671 atomic regions from SNP 27639 to 28239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,743 DEBUG Processing 64/605 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,758 DEBUG Processing 163/729 atomic regions from SNP 48762 to 49363 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,779 DEBUG Processing 552/732 atomic regions from SNP 165539 to 166139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,851 DEBUG Processing 143/685 atomic regions from SNP 42600 to 43200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,869 DEBUG Processing 94/671 atomic regions from SNP 27939 to 28539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,965 DEBUG Processing 65/605 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,002 DEBUG Processing 164/729 atomic regions from SNP 49063 to 49664 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,021 DEBUG Processing 553/732 atomic regions from SNP 165839 to 166439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,083 DEBUG Processing 144/685 atomic regions from SNP 42900 to 43500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,098 DEBUG Processing 95/671 atomic regions from SNP 28239 to 28839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,185 DEBUG Processing 66/605 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,242 DEBUG Processing 165/729 atomic regions from SNP 49364 to 49965 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,260 DEBUG Processing 554/732 atomic regions from SNP 166139 to 166739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,316 DEBUG Processing 145/685 atomic regions from SNP 43200 to 43800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,324 DEBUG Processing 96/671 atomic regions from SNP 28539 to 29139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,405 DEBUG Processing 67/605 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,482 DEBUG Processing 166/729 atomic regions from SNP 49665 to 50266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,505 DEBUG Processing 555/732 atomic regions from SNP 166439 to 167039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,551 DEBUG Processing 146/685 atomic regions from SNP 43500 to 44100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,554 DEBUG Processing 97/671 atomic regions from SNP 28839 to 29439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,621 DEBUG Processing 68/605 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,722 DEBUG Processing 167/729 atomic regions from SNP 49966 to 50567 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,751 DEBUG Processing 556/732 atomic regions from SNP 166739 to 167339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,788 DEBUG Processing 98/671 atomic regions from SNP 29139 to 29739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,796 DEBUG Processing 147/685 atomic regions from SNP 43800 to 44400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,838 DEBUG Processing 69/605 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,971 DEBUG Processing 168/729 atomic regions from SNP 50267 to 50868 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,000 DEBUG Processing 557/732 atomic regions from SNP 167039 to 167639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,020 DEBUG Processing 99/671 atomic regions from SNP 29439 to 30039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,045 DEBUG Processing 148/685 atomic regions from SNP 44100 to 44700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,058 DEBUG Processing 70/605 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,217 DEBUG Processing 169/729 atomic regions from SNP 50568 to 51169 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,248 DEBUG Processing 558/732 atomic regions from SNP 167339 to 167939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,258 DEBUG Processing 100/671 atomic regions from SNP 29739 to 30339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,284 DEBUG Processing 71/605 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,293 DEBUG Processing 149/685 atomic regions from SNP 44400 to 45000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,474 DEBUG Processing 170/729 atomic regions from SNP 50869 to 51470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,492 DEBUG Processing 101/671 atomic regions from SNP 30039 to 30639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,494 DEBUG Processing 559/732 atomic regions from SNP 167639 to 168239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,510 DEBUG Processing 72/605 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,532 DEBUG Processing 150/685 atomic regions from SNP 44700 to 45300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,727 DEBUG Processing 102/671 atomic regions from SNP 30339 to 30939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,734 DEBUG Processing 171/729 atomic regions from SNP 51170 to 51771 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,736 DEBUG Processing 73/605 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,750 DEBUG Processing 560/732 atomic regions from SNP 167939 to 168539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,767 DEBUG Processing 151/685 atomic regions from SNP 45000 to 45600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,965 DEBUG Processing 103/671 atomic regions from SNP 30639 to 31239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,972 DEBUG Processing 74/605 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,991 DEBUG Processing 172/729 atomic regions from SNP 51471 to 52072 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,004 DEBUG Processing 561/732 atomic regions from SNP 168239 to 168839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,010 DEBUG Processing 152/685 atomic regions from SNP 45300 to 45900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,199 DEBUG Processing 75/605 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,211 DEBUG Processing 104/671 atomic regions from SNP 30939 to 31539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,250 DEBUG Processing 153/685 atomic regions from SNP 45600 to 46200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,253 DEBUG Processing 173/729 atomic regions from SNP 51772 to 52373 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,267 DEBUG Processing 562/732 atomic regions from SNP 168539 to 169139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,424 DEBUG Processing 76/605 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,465 DEBUG Processing 105/671 atomic regions from SNP 31239 to 31839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,495 DEBUG Processing 154/685 atomic regions from SNP 45900 to 46500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,514 DEBUG Processing 174/729 atomic regions from SNP 52073 to 52674 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,519 DEBUG Processing 563/732 atomic regions from SNP 168839 to 169439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,639 DEBUG Processing 77/605 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,714 DEBUG Processing 106/671 atomic regions from SNP 31539 to 32139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,745 DEBUG Processing 155/685 atomic regions from SNP 46200 to 46800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,767 DEBUG Processing 175/729 atomic regions from SNP 52374 to 52975 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,781 DEBUG Processing 564/732 atomic regions from SNP 169139 to 169739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,851 DEBUG Processing 78/605 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,960 DEBUG Processing 107/671 atomic regions from SNP 31839 to 32439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,003 DEBUG Processing 156/685 atomic regions from SNP 46500 to 47100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,024 DEBUG Processing 176/729 atomic regions from SNP 52675 to 53276 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,043 DEBUG Processing 565/732 atomic regions from SNP 169439 to 170039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,067 DEBUG Processing 79/605 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,201 DEBUG Processing 108/671 atomic regions from SNP 32139 to 32739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,258 DEBUG Processing 157/685 atomic regions from SNP 46800 to 47400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,272 DEBUG Processing 177/729 atomic regions from SNP 52976 to 53577 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,289 DEBUG Processing 566/732 atomic regions from SNP 169739 to 170339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,290 DEBUG Processing 80/605 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,424 DEBUG Processing 109/671 atomic regions from SNP 32439 to 33039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,516 DEBUG Processing 158/685 atomic regions from SNP 47100 to 47700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,516 DEBUG Processing 81/605 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,519 DEBUG Processing 178/729 atomic regions from SNP 53277 to 53878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,535 DEBUG Processing 567/732 atomic regions from SNP 170039 to 170639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,643 DEBUG Processing 110/671 atomic regions from SNP 32739 to 33339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,741 DEBUG Processing 82/605 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,766 DEBUG Processing 179/729 atomic regions from SNP 53578 to 54179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,768 DEBUG Processing 159/685 atomic regions from SNP 47400 to 48000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,773 DEBUG Processing 568/732 atomic regions from SNP 170339 to 170939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,862 DEBUG Processing 111/671 atomic regions from SNP 33039 to 33639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,962 DEBUG Processing 83/605 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,014 DEBUG Processing 180/729 atomic regions from SNP 53879 to 54480 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,020 DEBUG Processing 569/732 atomic regions from SNP 170639 to 171239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,025 DEBUG Processing 160/685 atomic regions from SNP 47700 to 48300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,091 DEBUG Processing 112/671 atomic regions from SNP 33339 to 33939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,181 DEBUG Processing 84/605 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,261 DEBUG Processing 181/729 atomic regions from SNP 54180 to 54781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,263 DEBUG Processing 570/732 atomic regions from SNP 170939 to 171539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,278 DEBUG Processing 161/685 atomic regions from SNP 48000 to 48600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,322 DEBUG Processing 113/671 atomic regions from SNP 33639 to 34239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,396 DEBUG Processing 85/605 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,507 DEBUG Processing 182/729 atomic regions from SNP 54481 to 55082 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,509 DEBUG Processing 571/732 atomic regions from SNP 171239 to 171839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,545 DEBUG Processing 162/685 atomic regions from SNP 48300 to 48900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,554 DEBUG Processing 114/671 atomic regions from SNP 33939 to 34539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,628 DEBUG Processing 86/605 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,754 DEBUG Processing 572/732 atomic regions from SNP 171539 to 172139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,754 DEBUG Processing 183/729 atomic regions from SNP 54782 to 55383 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,794 DEBUG Processing 115/671 atomic regions from SNP 34239 to 34839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,801 DEBUG Processing 163/685 atomic regions from SNP 48600 to 49200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,846 DEBUG Processing 87/605 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,998 DEBUG Processing 184/729 atomic regions from SNP 55083 to 55684 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,000 DEBUG Processing 573/732 atomic regions from SNP 171839 to 172439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,046 DEBUG Processing 116/671 atomic regions from SNP 34539 to 35139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,057 DEBUG Processing 164/685 atomic regions from SNP 48900 to 49500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,068 DEBUG Processing 88/605 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,242 DEBUG Processing 185/729 atomic regions from SNP 55384 to 55985 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,243 DEBUG Processing 574/732 atomic regions from SNP 172139 to 172739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,282 DEBUG Processing 117/671 atomic regions from SNP 34839 to 35439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,299 DEBUG Processing 89/605 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,312 DEBUG Processing 165/685 atomic regions from SNP 49200 to 49800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,498 DEBUG Processing 186/729 atomic regions from SNP 55685 to 56286 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,504 DEBUG Processing 575/732 atomic regions from SNP 172439 to 173039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,525 DEBUG Processing 118/671 atomic regions from SNP 35139 to 35739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,528 DEBUG Processing 90/605 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,567 DEBUG Processing 166/685 atomic regions from SNP 49500 to 50100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,746 DEBUG Processing 187/729 atomic regions from SNP 55986 to 56587 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,749 DEBUG Processing 576/732 atomic regions from SNP 172739 to 173339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,756 DEBUG Processing 91/605 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,763 DEBUG Processing 119/671 atomic regions from SNP 35439 to 36039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,820 DEBUG Processing 167/685 atomic regions from SNP 49800 to 50400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,980 DEBUG Processing 92/605 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,990 DEBUG Processing 188/729 atomic regions from SNP 56287 to 56888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,992 DEBUG Processing 577/732 atomic regions from SNP 173039 to 173639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,995 DEBUG Processing 120/671 atomic regions from SNP 35739 to 36339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,066 DEBUG Processing 168/685 atomic regions from SNP 50100 to 50700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,206 DEBUG Processing 93/605 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,234 DEBUG Processing 121/671 atomic regions from SNP 36039 to 36639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,240 DEBUG Processing 189/729 atomic regions from SNP 56588 to 57189 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,250 DEBUG Processing 578/732 atomic regions from SNP 173339 to 173939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,315 DEBUG Processing 169/685 atomic regions from SNP 50400 to 51000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,446 DEBUG Processing 94/605 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,498 DEBUG Processing 122/671 atomic regions from SNP 36339 to 36939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,499 DEBUG Processing 190/729 atomic regions from SNP 56889 to 57490 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,515 DEBUG Processing 579/732 atomic regions from SNP 173639 to 174239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,553 DEBUG Processing 170/685 atomic regions from SNP 50700 to 51300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,654 DEBUG Processing 95/605 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,730 DEBUG Processing 123/671 atomic regions from SNP 36639 to 37239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,746 DEBUG Processing 191/729 atomic regions from SNP 57190 to 57791 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,779 DEBUG Processing 580/732 atomic regions from SNP 173939 to 174539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,799 DEBUG Processing 171/685 atomic regions from SNP 51000 to 51600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,863 DEBUG Processing 96/605 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,960 DEBUG Processing 124/671 atomic regions from SNP 36939 to 37539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,993 DEBUG Processing 192/729 atomic regions from SNP 57491 to 58092 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,036 DEBUG Processing 581/732 atomic regions from SNP 174239 to 174839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,044 DEBUG Processing 172/685 atomic regions from SNP 51300 to 51900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,081 DEBUG Processing 97/605 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,184 DEBUG Processing 125/671 atomic regions from SNP 37239 to 37839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,242 DEBUG Processing 193/729 atomic regions from SNP 57792 to 58393 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,289 DEBUG Processing 173/685 atomic regions from SNP 51600 to 52200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,290 DEBUG Processing 582/732 atomic regions from SNP 174539 to 175139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,305 DEBUG Processing 98/605 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,399 DEBUG Processing 126/671 atomic regions from SNP 37539 to 38139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,484 DEBUG Processing 194/729 atomic regions from SNP 58093 to 58694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,530 DEBUG Processing 99/605 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,535 DEBUG Processing 583/732 atomic regions from SNP 174839 to 175439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,536 DEBUG Processing 174/685 atomic regions from SNP 51900 to 52500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,614 DEBUG Processing 127/671 atomic regions from SNP 37839 to 38439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,727 DEBUG Processing 195/729 atomic regions from SNP 58394 to 58995 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,754 DEBUG Processing 100/605 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,778 DEBUG Processing 584/732 atomic regions from SNP 175139 to 175739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,786 DEBUG Processing 175/685 atomic regions from SNP 52200 to 52800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,829 DEBUG Processing 128/671 atomic regions from SNP 38139 to 38739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,970 DEBUG Processing 196/729 atomic regions from SNP 58695 to 59296 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,980 DEBUG Processing 101/605 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,021 DEBUG Processing 176/685 atomic regions from SNP 52500 to 53100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,026 DEBUG Processing 585/732 atomic regions from SNP 175439 to 176039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,066 DEBUG Processing 129/671 atomic regions from SNP 38439 to 39039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,202 DEBUG Processing 102/605 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,209 DEBUG Processing 197/729 atomic regions from SNP 58996 to 59597 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,255 DEBUG Processing 177/685 atomic regions from SNP 52800 to 53400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,281 DEBUG Processing 586/732 atomic regions from SNP 175739 to 176339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,311 DEBUG Processing 130/671 atomic regions from SNP 38739 to 39339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,421 DEBUG Processing 103/605 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,453 DEBUG Processing 198/729 atomic regions from SNP 59297 to 59898 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,457 DEBUG Segmenting atomic regions: 2025-01-31 09:54:37,486 DEBUG Processing 178/685 atomic regions from SNP 53100 to 53700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,521 DEBUG Processing 587/732 atomic regions from SNP 176039 to 176639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,535 DEBUG Processing 1/567 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,547 DEBUG Processing 131/671 atomic regions from SNP 39039 to 39639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,633 DEBUG Processing 104/605 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,688 DEBUG Processing 199/729 atomic regions from SNP 59598 to 60199 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,728 DEBUG Processing 179/685 atomic regions from SNP 53400 to 54000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,750 DEBUG Processing 2/567 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,760 DEBUG Processing 588/732 atomic regions from SNP 176339 to 176939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,775 DEBUG Processing 132/671 atomic regions from SNP 39339 to 39939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,848 DEBUG Processing 105/605 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,933 DEBUG Processing 200/729 atomic regions from SNP 59899 to 60500 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,978 DEBUG Processing 3/567 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,995 DEBUG Processing 180/685 atomic regions from SNP 53700 to 54300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,006 DEBUG Processing 133/671 atomic regions from SNP 39639 to 40239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,006 DEBUG Processing 589/732 atomic regions from SNP 176639 to 177239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,062 DEBUG Processing 106/605 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,183 DEBUG Processing 201/729 atomic regions from SNP 60200 to 60801 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,214 DEBUG Processing 4/567 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,241 DEBUG Processing 134/671 atomic regions from SNP 39939 to 40539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,254 DEBUG Processing 590/732 atomic regions from SNP 176939 to 177539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,257 DEBUG Processing 181/685 atomic regions from SNP 54000 to 54600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,281 DEBUG Processing 107/605 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,427 DEBUG Processing 202/729 atomic regions from SNP 60501 to 61102 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,444 DEBUG Processing 5/567 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,477 DEBUG Processing 135/671 atomic regions from SNP 40239 to 40839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,507 DEBUG Processing 591/732 atomic regions from SNP 177239 to 177839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,510 DEBUG Processing 108/605 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,518 DEBUG Processing 182/685 atomic regions from SNP 54300 to 54900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,667 DEBUG Processing 203/729 atomic regions from SNP 60802 to 61403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,674 DEBUG Processing 6/567 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,711 DEBUG Processing 136/671 atomic regions from SNP 40539 to 41139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,741 DEBUG Processing 109/605 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,753 DEBUG Processing 592/732 atomic regions from SNP 177539 to 178139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,764 DEBUG Processing 183/685 atomic regions from SNP 54600 to 55200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,911 DEBUG Processing 204/729 atomic regions from SNP 61103 to 61704 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,914 DEBUG Processing 7/567 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,945 DEBUG Processing 137/671 atomic regions from SNP 40839 to 41439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,969 DEBUG Processing 110/605 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,003 DEBUG Processing 593/732 atomic regions from SNP 177839 to 178439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,018 DEBUG Processing 184/685 atomic regions from SNP 54900 to 55500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,163 DEBUG Processing 8/567 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,172 DEBUG Processing 138/671 atomic regions from SNP 41139 to 41739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,173 DEBUG Processing 205/729 atomic regions from SNP 61404 to 62005 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,206 DEBUG Processing 111/605 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,249 DEBUG Processing 594/732 atomic regions from SNP 178139 to 178739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,282 DEBUG Processing 185/685 atomic regions from SNP 55200 to 55800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,396 DEBUG Processing 139/671 atomic regions from SNP 41439 to 42039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,401 DEBUG Processing 9/567 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,411 DEBUG Processing 206/729 atomic regions from SNP 61705 to 62306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,427 DEBUG Processing 112/605 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,494 DEBUG Processing 595/732 atomic regions from SNP 178439 to 179039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,526 DEBUG Processing 186/685 atomic regions from SNP 55500 to 56100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,623 DEBUG Processing 140/671 atomic regions from SNP 41739 to 42339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,645 DEBUG Processing 10/567 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,646 DEBUG Processing 113/605 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,654 DEBUG Processing 207/729 atomic regions from SNP 62006 to 62607 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,738 DEBUG Processing 596/732 atomic regions from SNP 178739 to 179339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,760 DEBUG Processing 187/685 atomic regions from SNP 55800 to 56400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,851 DEBUG Processing 141/671 atomic regions from SNP 42039 to 42639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,863 DEBUG Processing 114/605 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,882 DEBUG Processing 11/567 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,897 DEBUG Processing 208/729 atomic regions from SNP 62307 to 62908 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,979 DEBUG Processing 597/732 atomic regions from SNP 179039 to 179639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,998 DEBUG Processing 188/685 atomic regions from SNP 56100 to 56700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,079 DEBUG Processing 142/671 atomic regions from SNP 42339 to 42939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,081 DEBUG Processing 115/605 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,121 DEBUG Processing 12/567 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,140 DEBUG Processing 209/729 atomic regions from SNP 62608 to 63209 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,221 DEBUG Processing 598/732 atomic regions from SNP 179339 to 179939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,235 DEBUG Processing 189/685 atomic regions from SNP 56400 to 57000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,309 DEBUG Processing 143/671 atomic regions from SNP 42639 to 43239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,315 DEBUG Processing 116/605 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,350 DEBUG Processing 13/567 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,379 DEBUG Processing 210/729 atomic regions from SNP 62909 to 63510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,465 DEBUG Processing 599/732 atomic regions from SNP 179639 to 180239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,492 DEBUG Processing 190/685 atomic regions from SNP 56700 to 57300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,544 DEBUG Processing 144/671 atomic regions from SNP 42939 to 43539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,545 DEBUG Processing 117/605 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,569 DEBUG Processing 14/567 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,627 DEBUG Processing 211/729 atomic regions from SNP 63210 to 63811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,719 DEBUG Processing 600/732 atomic regions from SNP 179939 to 180539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,755 DEBUG Processing 191/685 atomic regions from SNP 57000 to 57600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,774 DEBUG Processing 118/605 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,784 DEBUG Processing 145/671 atomic regions from SNP 43239 to 43839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,795 DEBUG Processing 15/567 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,872 DEBUG Processing 212/729 atomic regions from SNP 63511 to 64112 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,995 DEBUG Processing 601/732 atomic regions from SNP 180239 to 180839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,020 DEBUG Processing 119/605 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,025 DEBUG Processing 192/685 atomic regions from SNP 57300 to 57900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,029 DEBUG Processing 16/567 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,042 DEBUG Processing 146/671 atomic regions from SNP 43539 to 44139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,115 DEBUG Processing 213/729 atomic regions from SNP 63812 to 64413 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,250 DEBUG Processing 120/605 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,253 DEBUG Processing 17/567 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,254 DEBUG Processing 602/732 atomic regions from SNP 180539 to 181139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,272 DEBUG Processing 193/685 atomic regions from SNP 57600 to 58200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,287 DEBUG Processing 147/671 atomic regions from SNP 43839 to 44439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,355 DEBUG Processing 214/729 atomic regions from SNP 64113 to 64714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,472 DEBUG Processing 18/567 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,477 DEBUG Processing 121/605 atomic regions from SNP 36120 to 36720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,511 DEBUG Processing 603/732 atomic regions from SNP 180839 to 181439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,512 DEBUG Processing 194/685 atomic regions from SNP 57900 to 58500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,524 DEBUG Processing 148/671 atomic regions from SNP 44139 to 44739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,599 DEBUG Processing 215/729 atomic regions from SNP 64414 to 65015 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,684 DEBUG Processing 19/567 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,697 DEBUG Processing 122/605 atomic regions from SNP 36420 to 37020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,758 DEBUG Processing 195/685 atomic regions from SNP 58200 to 58800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,771 DEBUG Processing 149/671 atomic regions from SNP 44439 to 45039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,776 DEBUG Processing 604/732 atomic regions from SNP 181139 to 181739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,845 DEBUG Processing 216/729 atomic regions from SNP 64715 to 65316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,889 DEBUG Processing 20/567 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,908 DEBUG Processing 123/605 atomic regions from SNP 36720 to 37320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,001 DEBUG Processing 196/685 atomic regions from SNP 58500 to 59100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,031 DEBUG Processing 150/671 atomic regions from SNP 44739 to 45339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,042 DEBUG Processing 605/732 atomic regions from SNP 181439 to 182039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,097 DEBUG Processing 217/729 atomic regions from SNP 65016 to 65617 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,099 DEBUG Processing 21/567 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,132 DEBUG Processing 124/605 atomic regions from SNP 37020 to 37620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,237 DEBUG Processing 197/685 atomic regions from SNP 58800 to 59400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,288 DEBUG Processing 151/671 atomic regions from SNP 45039 to 45639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,303 DEBUG Processing 606/732 atomic regions from SNP 181739 to 182339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,318 DEBUG Processing 22/567 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,348 DEBUG Processing 125/605 atomic regions from SNP 37320 to 37920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,348 DEBUG Processing 218/729 atomic regions from SNP 65317 to 65918 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,471 DEBUG Processing 198/685 atomic regions from SNP 59100 to 59700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,542 DEBUG Processing 152/671 atomic regions from SNP 45339 to 45939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,547 DEBUG Processing 23/567 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,556 DEBUG Processing 607/732 atomic regions from SNP 182039 to 182639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,574 DEBUG Processing 126/605 atomic regions from SNP 37620 to 38220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,604 DEBUG Processing 219/729 atomic regions from SNP 65618 to 66219 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,699 DEBUG Processing 199/685 atomic regions from SNP 59400 to 60000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,782 DEBUG Processing 153/671 atomic regions from SNP 45639 to 46239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,792 DEBUG Processing 24/567 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,804 DEBUG Processing 127/605 atomic regions from SNP 37920 to 38520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,810 DEBUG Processing 608/732 atomic regions from SNP 182339 to 182939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,868 DEBUG Processing 220/729 atomic regions from SNP 65919 to 66520 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,933 DEBUG Processing 200/685 atomic regions from SNP 59700 to 60300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,016 DEBUG Processing 25/567 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,018 DEBUG Processing 154/671 atomic regions from SNP 45939 to 46539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,033 DEBUG Processing 128/605 atomic regions from SNP 38220 to 38820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,059 DEBUG Processing 609/732 atomic regions from SNP 182639 to 183239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,112 DEBUG Processing 221/729 atomic regions from SNP 66220 to 66821 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,177 DEBUG Processing 201/685 atomic regions from SNP 60000 to 60600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,242 DEBUG Processing 26/567 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,253 DEBUG Processing 155/671 atomic regions from SNP 46239 to 46839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,259 DEBUG Processing 129/605 atomic regions from SNP 38520 to 39120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,310 DEBUG Processing 610/732 atomic regions from SNP 182939 to 183539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,355 DEBUG Processing 222/729 atomic regions from SNP 66521 to 67122 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,426 DEBUG Processing 202/685 atomic regions from SNP 60300 to 60900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,463 DEBUG Processing 27/567 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,482 DEBUG Processing 130/605 atomic regions from SNP 38820 to 39420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,499 DEBUG Processing 156/671 atomic regions from SNP 46539 to 47139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,551 DEBUG Processing 611/732 atomic regions from SNP 183239 to 183839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,594 DEBUG Processing 223/729 atomic regions from SNP 66822 to 67423 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,681 DEBUG Processing 28/567 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,689 DEBUG Processing 203/685 atomic regions from SNP 60600 to 61200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,703 DEBUG Processing 131/605 atomic regions from SNP 39120 to 39720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,743 DEBUG Processing 157/671 atomic regions from SNP 46839 to 47439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,786 DEBUG Processing 612/732 atomic regions from SNP 183539 to 184139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,826 DEBUG Processing 224/729 atomic regions from SNP 67123 to 67724 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,898 DEBUG Processing 29/567 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,924 DEBUG Processing 132/605 atomic regions from SNP 39420 to 40020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,947 DEBUG Processing 204/685 atomic regions from SNP 60900 to 61500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,991 DEBUG Processing 158/671 atomic regions from SNP 47139 to 47739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,021 DEBUG Processing 613/732 atomic regions from SNP 183839 to 184439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,059 DEBUG Processing 225/729 atomic regions from SNP 67424 to 68025 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,113 DEBUG Processing 30/567 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,145 DEBUG Processing 133/605 atomic regions from SNP 39720 to 40320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,191 DEBUG Processing 205/685 atomic regions from SNP 61200 to 61800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,226 DEBUG Processing 159/671 atomic regions from SNP 47439 to 48039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,268 DEBUG Processing 614/732 atomic regions from SNP 184139 to 184739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,302 DEBUG Processing 226/729 atomic regions from SNP 67725 to 68326 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,331 DEBUG Processing 31/567 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,368 DEBUG Processing 134/605 atomic regions from SNP 40020 to 40620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,439 DEBUG Processing 206/685 atomic regions from SNP 61500 to 62100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,461 DEBUG Processing 160/671 atomic regions from SNP 47739 to 48339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,518 DEBUG Processing 615/732 atomic regions from SNP 184439 to 185039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,557 DEBUG Processing 227/729 atomic regions from SNP 68026 to 68627 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,572 DEBUG Processing 32/567 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,597 DEBUG Processing 135/605 atomic regions from SNP 40320 to 40920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,698 DEBUG Processing 161/671 atomic regions from SNP 48039 to 48639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,703 DEBUG Processing 207/685 atomic regions from SNP 61800 to 62400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,763 DEBUG Processing 616/732 atomic regions from SNP 184739 to 185339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,806 DEBUG Processing 228/729 atomic regions from SNP 68327 to 68928 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,815 DEBUG Processing 33/567 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,817 DEBUG Processing 136/605 atomic regions from SNP 40620 to 41220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,932 DEBUG Processing 162/671 atomic regions from SNP 48339 to 48939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,969 DEBUG Processing 208/685 atomic regions from SNP 62100 to 62700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,013 DEBUG Processing 617/732 atomic regions from SNP 185039 to 185639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,037 DEBUG Processing 137/605 atomic regions from SNP 40920 to 41520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,058 DEBUG Processing 229/729 atomic regions from SNP 68628 to 69229 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,058 DEBUG Processing 34/567 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,163 DEBUG Processing 163/671 atomic regions from SNP 48639 to 49239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,213 DEBUG Processing 209/685 atomic regions from SNP 62400 to 63000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,260 DEBUG Processing 138/605 atomic regions from SNP 41220 to 41820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,263 DEBUG Processing 618/732 atomic regions from SNP 185339 to 185939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,292 DEBUG Processing 35/567 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,308 DEBUG Processing 230/729 atomic regions from SNP 68929 to 69530 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,391 DEBUG Processing 164/671 atomic regions from SNP 48939 to 49539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,443 DEBUG Processing 210/685 atomic regions from SNP 62700 to 63300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,478 DEBUG Processing 139/605 atomic regions from SNP 41520 to 42120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,507 DEBUG Processing 619/732 atomic regions from SNP 185639 to 186239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,508 DEBUG Processing 36/567 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,558 DEBUG Processing 231/729 atomic regions from SNP 69230 to 69831 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,618 DEBUG Processing 165/671 atomic regions from SNP 49239 to 49839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,674 DEBUG Processing 211/685 atomic regions from SNP 63000 to 63600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,697 DEBUG Processing 140/605 atomic regions from SNP 41820 to 42420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,725 DEBUG Processing 37/567 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,754 DEBUG Processing 620/732 atomic regions from SNP 185939 to 186539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,803 DEBUG Processing 232/729 atomic regions from SNP 69531 to 70132 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,838 DEBUG Processing 166/671 atomic regions from SNP 49539 to 50139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,903 DEBUG Processing 212/685 atomic regions from SNP 63300 to 63900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,914 DEBUG Processing 141/605 atomic regions from SNP 42120 to 42720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,938 DEBUG Processing 38/567 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,993 DEBUG Processing 621/732 atomic regions from SNP 186239 to 186839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,043 DEBUG Processing 233/729 atomic regions from SNP 69832 to 70433 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,061 DEBUG Processing 167/671 atomic regions from SNP 49839 to 50439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,128 DEBUG Processing 142/605 atomic regions from SNP 42420 to 43020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,131 DEBUG Processing 213/685 atomic regions from SNP 63600 to 64200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,148 DEBUG Processing 39/567 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,230 DEBUG Processing 622/732 atomic regions from SNP 186539 to 187139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,285 DEBUG Processing 234/729 atomic regions from SNP 70133 to 70734 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,289 DEBUG Processing 168/671 atomic regions from SNP 50139 to 50739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,355 DEBUG Processing 143/605 atomic regions from SNP 42720 to 43320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,364 DEBUG Processing 40/567 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,364 DEBUG Processing 214/685 atomic regions from SNP 63900 to 64500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,491 DEBUG Processing 623/732 atomic regions from SNP 186839 to 187439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,528 DEBUG Processing 169/671 atomic regions from SNP 50439 to 51039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,530 DEBUG Processing 235/729 atomic regions from SNP 70434 to 71035 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,586 DEBUG Processing 41/567 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,594 DEBUG Processing 144/605 atomic regions from SNP 43020 to 43620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,598 DEBUG Processing 215/685 atomic regions from SNP 64200 to 64800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,750 DEBUG Processing 624/732 atomic regions from SNP 187139 to 187739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,753 DEBUG Processing 170/671 atomic regions from SNP 50739 to 51339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,769 DEBUG Processing 236/729 atomic regions from SNP 70735 to 71336 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,801 DEBUG Processing 42/567 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,823 DEBUG Processing 145/605 atomic regions from SNP 43320 to 43920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,831 DEBUG Processing 216/685 atomic regions from SNP 64500 to 65100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,973 DEBUG Processing 171/671 atomic regions from SNP 51039 to 51639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,005 DEBUG Processing 625/732 atomic regions from SNP 187439 to 188039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,008 DEBUG Processing 237/729 atomic regions from SNP 71036 to 71637 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,020 DEBUG Processing 43/567 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,046 DEBUG Processing 146/605 atomic regions from SNP 43620 to 44220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,063 DEBUG Processing 217/685 atomic regions from SNP 64800 to 65400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,185 DEBUG Processing 172/671 atomic regions from SNP 51339 to 51939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,244 DEBUG Processing 238/729 atomic regions from SNP 71337 to 71938 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,244 DEBUG Processing 626/732 atomic regions from SNP 187739 to 188339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,252 DEBUG Processing 44/567 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,263 DEBUG Processing 147/605 atomic regions from SNP 43920 to 44520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,294 DEBUG Processing 218/685 atomic regions from SNP 65100 to 65700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,399 DEBUG Processing 173/671 atomic regions from SNP 51639 to 52239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,484 DEBUG Processing 148/605 atomic regions from SNP 44220 to 44820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,489 DEBUG Processing 627/732 atomic regions from SNP 188039 to 188639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,490 DEBUG Processing 239/729 atomic regions from SNP 71638 to 72239 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,494 DEBUG Processing 45/567 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,531 DEBUG Processing 219/685 atomic regions from SNP 65400 to 66000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,614 DEBUG Processing 174/671 atomic regions from SNP 51939 to 52539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,706 DEBUG Processing 149/605 atomic regions from SNP 44520 to 45120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,737 DEBUG Processing 628/732 atomic regions from SNP 188339 to 188939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,741 DEBUG Processing 240/729 atomic regions from SNP 71939 to 72540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,742 DEBUG Processing 46/567 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,773 DEBUG Processing 220/685 atomic regions from SNP 65700 to 66300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,838 DEBUG Processing 175/671 atomic regions from SNP 52239 to 52839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,914 DEBUG Processing 150/605 atomic regions from SNP 44820 to 45420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,980 DEBUG Processing 629/732 atomic regions from SNP 188639 to 189239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,981 DEBUG Processing 47/567 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,987 DEBUG Processing 241/729 atomic regions from SNP 72240 to 72841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,013 DEBUG Processing 221/685 atomic regions from SNP 66000 to 66600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,065 DEBUG Processing 176/671 atomic regions from SNP 52539 to 53139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,123 DEBUG Processing 151/605 atomic regions from SNP 45120 to 45720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,220 DEBUG Processing 48/567 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,243 DEBUG Processing 242/729 atomic regions from SNP 72541 to 73142 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,248 DEBUG Processing 630/732 atomic regions from SNP 188939 to 189539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,271 DEBUG Processing 222/685 atomic regions from SNP 66300 to 66900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,313 DEBUG Processing 177/671 atomic regions from SNP 52839 to 53439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,335 DEBUG Processing 152/605 atomic regions from SNP 45420 to 46020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,447 DEBUG Processing 49/567 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,487 DEBUG Processing 243/729 atomic regions from SNP 72842 to 73443 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,524 DEBUG Processing 631/732 atomic regions from SNP 189239 to 189839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,529 DEBUG Processing 223/685 atomic regions from SNP 66600 to 67200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,546 DEBUG Processing 178/671 atomic regions from SNP 53139 to 53739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,554 DEBUG Processing 153/605 atomic regions from SNP 45720 to 46320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,664 DEBUG Processing 50/567 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,724 DEBUG Processing 244/729 atomic regions from SNP 73143 to 73744 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,780 DEBUG Processing 154/605 atomic regions from SNP 46020 to 46620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,781 DEBUG Processing 179/671 atomic regions from SNP 53439 to 54039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,783 DEBUG Processing 224/685 atomic regions from SNP 66900 to 67500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,801 DEBUG Processing 632/732 atomic regions from SNP 189539 to 190139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,891 DEBUG Processing 51/567 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,970 DEBUG Processing 245/729 atomic regions from SNP 73444 to 74045 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,010 DEBUG Processing 155/605 atomic regions from SNP 46320 to 46920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,031 DEBUG Processing 180/671 atomic regions from SNP 53739 to 54339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,042 DEBUG Processing 225/685 atomic regions from SNP 67200 to 67800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,074 DEBUG Processing 633/732 atomic regions from SNP 189839 to 190439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,113 DEBUG Processing 52/567 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,205 DEBUG Processing 246/729 atomic regions from SNP 73745 to 74346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,237 DEBUG Processing 156/605 atomic regions from SNP 46620 to 47220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,270 DEBUG Processing 181/671 atomic regions from SNP 54039 to 54639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,287 DEBUG Processing 226/685 atomic regions from SNP 67500 to 68100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,338 DEBUG Processing 53/567 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,354 DEBUG Processing 634/732 atomic regions from SNP 190139 to 190739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,434 DEBUG Processing 247/729 atomic regions from SNP 74046 to 74647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,450 DEBUG Processing 157/605 atomic regions from SNP 46920 to 47520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,500 DEBUG Processing 182/671 atomic regions from SNP 54339 to 54939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,525 DEBUG Processing 227/685 atomic regions from SNP 67800 to 68400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,560 DEBUG Processing 54/567 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,617 DEBUG Processing 635/732 atomic regions from SNP 190439 to 191039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,656 DEBUG Processing 158/605 atomic regions from SNP 47220 to 47820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,662 DEBUG Processing 248/729 atomic regions from SNP 74347 to 74948 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,731 DEBUG Processing 183/671 atomic regions from SNP 54639 to 55239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,763 DEBUG Processing 228/685 atomic regions from SNP 68100 to 68700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,782 DEBUG Processing 55/567 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,863 DEBUG Processing 159/605 atomic regions from SNP 47520 to 48120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,873 DEBUG Processing 636/732 atomic regions from SNP 190739 to 191339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,893 DEBUG Processing 249/729 atomic regions from SNP 74648 to 75249 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,954 DEBUG Processing 184/671 atomic regions from SNP 54939 to 55539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,001 DEBUG Processing 229/685 atomic regions from SNP 68400 to 69000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,005 DEBUG Processing 56/567 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,080 DEBUG Processing 160/605 atomic regions from SNP 47820 to 48420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,130 DEBUG Processing 250/729 atomic regions from SNP 74949 to 75550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,135 DEBUG Processing 637/732 atomic regions from SNP 191039 to 191639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,179 DEBUG Processing 185/671 atomic regions from SNP 55239 to 55839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,228 DEBUG Processing 57/567 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,241 DEBUG Processing 230/685 atomic regions from SNP 68700 to 69300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,313 DEBUG Processing 161/605 atomic regions from SNP 48120 to 48720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,370 DEBUG Processing 251/729 atomic regions from SNP 75250 to 75851 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,398 DEBUG Processing 638/732 atomic regions from SNP 191339 to 191939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,403 DEBUG Processing 186/671 atomic regions from SNP 55539 to 56139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,453 DEBUG Processing 58/567 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,480 DEBUG Processing 231/685 atomic regions from SNP 69000 to 69600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,544 DEBUG Processing 162/605 atomic regions from SNP 48420 to 49020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,621 DEBUG Processing 252/729 atomic regions from SNP 75551 to 76152 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,633 DEBUG Processing 187/671 atomic regions from SNP 55839 to 56439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,664 DEBUG Processing 639/732 atomic regions from SNP 191639 to 192239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,675 DEBUG Processing 59/567 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,723 DEBUG Processing 232/685 atomic regions from SNP 69300 to 69900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,773 DEBUG Processing 163/605 atomic regions from SNP 48720 to 49320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,858 DEBUG Processing 188/671 atomic regions from SNP 56139 to 56739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,875 DEBUG Processing 253/729 atomic regions from SNP 75852 to 76453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,904 DEBUG Processing 60/567 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,929 DEBUG Processing 640/732 atomic regions from SNP 191939 to 192539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,973 DEBUG Processing 233/685 atomic regions from SNP 69600 to 70200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,994 DEBUG Processing 164/605 atomic regions from SNP 49020 to 49620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,090 DEBUG Processing 189/671 atomic regions from SNP 56439 to 57039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,120 DEBUG Processing 254/729 atomic regions from SNP 76153 to 76754 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,142 DEBUG Processing 61/567 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,182 DEBUG Processing 641/732 atomic regions from SNP 192239 to 192839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,201 DEBUG Processing 234/685 atomic regions from SNP 69900 to 70500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,208 DEBUG Processing 165/605 atomic regions from SNP 49320 to 49920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,316 DEBUG Processing 190/671 atomic regions from SNP 56739 to 57339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,358 DEBUG Processing 255/729 atomic regions from SNP 76454 to 77055 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,369 DEBUG Processing 62/567 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,416 DEBUG Processing 642/732 atomic regions from SNP 192539 to 193139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,422 DEBUG Processing 166/605 atomic regions from SNP 49620 to 50220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,427 DEBUG Processing 235/685 atomic regions from SNP 70200 to 70800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,556 DEBUG Processing 191/671 atomic regions from SNP 57039 to 57639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,618 DEBUG Processing 256/729 atomic regions from SNP 76755 to 77356 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,621 DEBUG Processing 63/567 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,660 DEBUG Processing 643/732 atomic regions from SNP 192839 to 193439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,663 DEBUG Processing 167/605 atomic regions from SNP 49920 to 50520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,682 DEBUG Processing 236/685 atomic regions from SNP 70500 to 71100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,794 DEBUG Processing 192/671 atomic regions from SNP 57339 to 57939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,858 DEBUG Processing 64/567 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,875 DEBUG Processing 257/729 atomic regions from SNP 77056 to 77657 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,908 DEBUG Processing 644/732 atomic regions from SNP 193139 to 193739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,910 DEBUG Processing 168/605 atomic regions from SNP 50220 to 50820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,935 DEBUG Processing 237/685 atomic regions from SNP 70800 to 71400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,028 DEBUG Processing 193/671 atomic regions from SNP 57639 to 58239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,088 DEBUG Processing 65/567 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,138 DEBUG Processing 258/729 atomic regions from SNP 77357 to 77958 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,145 DEBUG Processing 169/605 atomic regions from SNP 50520 to 51120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,165 DEBUG Processing 645/732 atomic regions from SNP 193439 to 194039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,187 DEBUG Processing 238/685 atomic regions from SNP 71100 to 71700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,261 DEBUG Processing 194/671 atomic regions from SNP 57939 to 58539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,319 DEBUG Processing 66/567 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,366 DEBUG Processing 170/605 atomic regions from SNP 50820 to 51420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,391 DEBUG Processing 259/729 atomic regions from SNP 77658 to 78259 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,409 DEBUG Processing 646/732 atomic regions from SNP 193739 to 194339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,436 DEBUG Processing 239/685 atomic regions from SNP 71400 to 72000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,495 DEBUG Processing 195/671 atomic regions from SNP 58239 to 58839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,555 DEBUG Processing 67/567 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,584 DEBUG Processing 171/605 atomic regions from SNP 51120 to 51720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,633 DEBUG Processing 260/729 atomic regions from SNP 77959 to 78560 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,662 DEBUG Processing 647/732 atomic regions from SNP 194039 to 194639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,678 DEBUG Processing 240/685 atomic regions from SNP 71700 to 72300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,738 DEBUG Processing 196/671 atomic regions from SNP 58539 to 59139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,798 DEBUG Processing 68/567 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,817 DEBUG Processing 172/605 atomic regions from SNP 51420 to 52020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,876 DEBUG Processing 261/729 atomic regions from SNP 78260 to 78861 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,921 DEBUG Processing 648/732 atomic regions from SNP 194339 to 194939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,930 DEBUG Processing 241/685 atomic regions from SNP 72000 to 72600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,981 DEBUG Processing 197/671 atomic regions from SNP 58839 to 59439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,031 DEBUG Processing 69/567 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,050 DEBUG Processing 173/605 atomic regions from SNP 51720 to 52320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,114 DEBUG Processing 262/729 atomic regions from SNP 78561 to 79162 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,169 DEBUG Processing 242/685 atomic regions from SNP 72300 to 72900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,174 DEBUG Processing 649/732 atomic regions from SNP 194639 to 195239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,233 DEBUG Processing 198/671 atomic regions from SNP 59139 to 59739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,252 DEBUG Processing 70/567 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,273 DEBUG Processing 174/605 atomic regions from SNP 52020 to 52620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,351 DEBUG Processing 263/729 atomic regions from SNP 78862 to 79463 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,404 DEBUG Processing 243/685 atomic regions from SNP 72600 to 73200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,461 DEBUG Processing 650/732 atomic regions from SNP 194939 to 195539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,472 DEBUG Processing 199/671 atomic regions from SNP 59439 to 60039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,476 DEBUG Processing 71/567 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,503 DEBUG Processing 175/605 atomic regions from SNP 52320 to 52920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,587 DEBUG Processing 264/729 atomic regions from SNP 79163 to 79764 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,637 DEBUG Processing 244/685 atomic regions from SNP 72900 to 73500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,698 DEBUG Processing 72/567 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,707 DEBUG Processing 200/671 atomic regions from SNP 59739 to 60339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,733 DEBUG Processing 176/605 atomic regions from SNP 52620 to 53220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,735 DEBUG Processing 651/732 atomic regions from SNP 195239 to 195839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,824 DEBUG Processing 265/729 atomic regions from SNP 79464 to 80065 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,883 DEBUG Processing 245/685 atomic regions from SNP 73200 to 73800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,922 DEBUG Processing 73/567 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,945 DEBUG Processing 201/671 atomic regions from SNP 60039 to 60639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,963 DEBUG Processing 177/605 atomic regions from SNP 52920 to 53520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,002 DEBUG Processing 652/732 atomic regions from SNP 195539 to 196139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,065 DEBUG Processing 266/729 atomic regions from SNP 79765 to 80366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,139 DEBUG Processing 246/685 atomic regions from SNP 73500 to 74100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,140 DEBUG Processing 74/567 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,178 DEBUG Processing 202/671 atomic regions from SNP 60339 to 60939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,188 DEBUG Processing 178/605 atomic regions from SNP 53220 to 53820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,256 DEBUG Processing 653/732 atomic regions from SNP 195839 to 196439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,310 DEBUG Processing 267/729 atomic regions from SNP 80066 to 80667 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,357 DEBUG Processing 75/567 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,386 DEBUG Processing 247/685 atomic regions from SNP 73800 to 74400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,412 DEBUG Processing 179/605 atomic regions from SNP 53520 to 54120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,420 DEBUG Processing 203/671 atomic regions from SNP 60639 to 61239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,508 DEBUG Processing 654/732 atomic regions from SNP 196139 to 196739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,562 DEBUG Processing 268/729 atomic regions from SNP 80367 to 80968 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,581 DEBUG Processing 76/567 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,633 DEBUG Processing 180/605 atomic regions from SNP 53820 to 54420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,638 DEBUG Processing 248/685 atomic regions from SNP 74100 to 74700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,657 DEBUG Processing 204/671 atomic regions from SNP 60939 to 61539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,743 DEBUG Processing 655/732 atomic regions from SNP 196439 to 197039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,796 DEBUG Processing 77/567 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,800 DEBUG Processing 269/729 atomic regions from SNP 80668 to 81269 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,849 DEBUG Processing 181/605 atomic regions from SNP 54120 to 54720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,879 DEBUG Processing 249/685 atomic regions from SNP 74400 to 75000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,883 DEBUG Processing 205/671 atomic regions from SNP 61239 to 61839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,978 DEBUG Processing 656/732 atomic regions from SNP 196739 to 197339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,010 DEBUG Processing 78/567 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,041 DEBUG Processing 270/729 atomic regions from SNP 80969 to 81570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,068 DEBUG Processing 182/605 atomic regions from SNP 54420 to 55020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,110 DEBUG Processing 206/671 atomic regions from SNP 61539 to 62139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,128 DEBUG Processing 250/685 atomic regions from SNP 74700 to 75300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,215 DEBUG Processing 657/732 atomic regions from SNP 197039 to 197639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,227 DEBUG Processing 79/567 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,287 DEBUG Processing 271/729 atomic regions from SNP 81270 to 81870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,301 DEBUG Processing 183/605 atomic regions from SNP 54720 to 55320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,342 DEBUG Processing 207/671 atomic regions from SNP 61839 to 62439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,382 DEBUG Processing 251/685 atomic regions from SNP 75000 to 75600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,436 DEBUG Processing 80/567 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,458 DEBUG Processing 658/732 atomic regions from SNP 197339 to 197939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,524 DEBUG Processing 184/605 atomic regions from SNP 55020 to 55620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,532 DEBUG Processing 272/729 atomic regions from SNP 81570 to 82170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,569 DEBUG Processing 208/671 atomic regions from SNP 62139 to 62739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,620 DEBUG Processing 252/685 atomic regions from SNP 75300 to 75900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,645 DEBUG Processing 81/567 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,692 DEBUG Processing 659/732 atomic regions from SNP 197639 to 198239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,755 DEBUG Processing 185/605 atomic regions from SNP 55320 to 55920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,787 DEBUG Processing 273/729 atomic regions from SNP 81870 to 82470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,794 DEBUG Processing 209/671 atomic regions from SNP 62439 to 63039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,855 DEBUG Processing 82/567 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,864 DEBUG Processing 253/685 atomic regions from SNP 75600 to 76200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,926 DEBUG Processing 660/732 atomic regions from SNP 197939 to 198539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,994 DEBUG Processing 186/605 atomic regions from SNP 55620 to 56220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,039 DEBUG Processing 210/671 atomic regions from SNP 62739 to 63339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,046 DEBUG Processing 274/729 atomic regions from SNP 82170 to 82770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,092 DEBUG Processing 83/567 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,113 DEBUG Processing 254/685 atomic regions from SNP 75900 to 76500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,159 DEBUG Processing 661/732 atomic regions from SNP 198239 to 198839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,218 DEBUG Processing 187/605 atomic regions from SNP 55920 to 56520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,265 DEBUG Processing 211/671 atomic regions from SNP 63039 to 63639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,286 DEBUG Processing 275/729 atomic regions from SNP 82470 to 83070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,328 DEBUG Processing 84/567 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,346 DEBUG Processing 255/685 atomic regions from SNP 76200 to 76800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,396 DEBUG Processing 662/732 atomic regions from SNP 198539 to 199139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,440 DEBUG Processing 188/605 atomic regions from SNP 56220 to 56820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,491 DEBUG Processing 212/671 atomic regions from SNP 63339 to 63939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,525 DEBUG Processing 276/729 atomic regions from SNP 82770 to 83370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,564 DEBUG Processing 85/567 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,571 DEBUG Processing 256/685 atomic regions from SNP 76500 to 77100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,632 DEBUG Processing 663/732 atomic regions from SNP 198839 to 199439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,663 DEBUG Processing 189/605 atomic regions from SNP 56520 to 57120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,716 DEBUG Processing 213/671 atomic regions from SNP 63639 to 64239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,761 DEBUG Processing 277/729 atomic regions from SNP 83070 to 83670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,792 DEBUG Processing 86/567 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,796 DEBUG Processing 257/685 atomic regions from SNP 76800 to 77400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,872 DEBUG Processing 664/732 atomic regions from SNP 199139 to 199739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,905 DEBUG Processing 190/605 atomic regions from SNP 56820 to 57420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,946 DEBUG Processing 214/671 atomic regions from SNP 63939 to 64539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,013 DEBUG Processing 278/729 atomic regions from SNP 83370 to 83970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,028 DEBUG Processing 87/567 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,033 DEBUG Processing 258/685 atomic regions from SNP 77100 to 77700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,116 DEBUG Processing 665/732 atomic regions from SNP 199439 to 200039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,133 DEBUG Processing 191/605 atomic regions from SNP 57120 to 57720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,177 DEBUG Processing 215/671 atomic regions from SNP 64239 to 64839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,257 DEBUG Processing 88/567 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,273 DEBUG Processing 279/729 atomic regions from SNP 83670 to 84270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,276 DEBUG Processing 259/685 atomic regions from SNP 77400 to 78000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,357 DEBUG Processing 192/605 atomic regions from SNP 57420 to 58020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,361 DEBUG Processing 666/732 atomic regions from SNP 199739 to 200339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,408 DEBUG Processing 216/671 atomic regions from SNP 64539 to 65139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,492 DEBUG Processing 89/567 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,516 DEBUG Processing 260/685 atomic regions from SNP 77700 to 78300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,524 DEBUG Processing 280/729 atomic regions from SNP 83970 to 84570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,583 DEBUG Processing 193/605 atomic regions from SNP 57720 to 58320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,607 DEBUG Processing 667/732 atomic regions from SNP 200039 to 200639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,644 DEBUG Processing 217/671 atomic regions from SNP 64839 to 65439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,735 DEBUG Processing 90/567 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,774 DEBUG Processing 261/685 atomic regions from SNP 78000 to 78600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,785 DEBUG Processing 281/729 atomic regions from SNP 84270 to 84870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,847 DEBUG Processing 194/605 atomic regions from SNP 58020 to 58620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,877 DEBUG Processing 668/732 atomic regions from SNP 200339 to 200939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,894 DEBUG Processing 218/671 atomic regions from SNP 65139 to 65739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,978 DEBUG Processing 91/567 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,025 DEBUG Processing 262/685 atomic regions from SNP 78300 to 78900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,041 DEBUG Processing 282/729 atomic regions from SNP 84570 to 85170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,085 DEBUG Processing 195/605 atomic regions from SNP 58320 to 58920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,122 DEBUG Processing 669/732 atomic regions from SNP 200639 to 201239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,126 DEBUG Processing 219/671 atomic regions from SNP 65439 to 66039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,216 DEBUG Processing 92/567 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,253 DEBUG Processing 263/685 atomic regions from SNP 78600 to 79200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,284 DEBUG Processing 283/729 atomic regions from SNP 84870 to 85470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,324 DEBUG Processing 196/605 atomic regions from SNP 58620 to 59220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,353 DEBUG Processing 220/671 atomic regions from SNP 65739 to 66339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,377 DEBUG Processing 670/732 atomic regions from SNP 200939 to 201539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,448 DEBUG Processing 93/567 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,471 DEBUG Processing 264/685 atomic regions from SNP 78900 to 79500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,514 DEBUG Processing 284/729 atomic regions from SNP 85170 to 85770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,569 DEBUG Processing 197/605 atomic regions from SNP 58920 to 59520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,581 DEBUG Processing 221/671 atomic regions from SNP 66039 to 66639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,630 DEBUG Processing 671/732 atomic regions from SNP 201239 to 201839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,682 DEBUG Processing 94/567 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,692 DEBUG Processing 265/685 atomic regions from SNP 79200 to 79800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,743 DEBUG Processing 285/729 atomic regions from SNP 85470 to 86070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,807 DEBUG Processing 222/671 atomic regions from SNP 66339 to 66939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,814 DEBUG Processing 198/605 atomic regions from SNP 59220 to 59820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,877 DEBUG Processing 672/732 atomic regions from SNP 201539 to 202139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,903 DEBUG Processing 95/567 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,915 DEBUG Processing 266/685 atomic regions from SNP 79500 to 80100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,975 DEBUG Processing 286/729 atomic regions from SNP 85770 to 86370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,033 DEBUG Processing 223/671 atomic regions from SNP 66639 to 67239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,060 DEBUG Processing 199/605 atomic regions from SNP 59520 to 60120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,123 DEBUG Processing 96/567 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,139 DEBUG Processing 673/732 atomic regions from SNP 201839 to 202439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,151 DEBUG Processing 267/685 atomic regions from SNP 79800 to 80400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,210 DEBUG Processing 287/729 atomic regions from SNP 86070 to 86670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,254 DEBUG Processing 224/671 atomic regions from SNP 66939 to 67539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,306 DEBUG Processing 200/605 atomic regions from SNP 59820 to 60420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,343 DEBUG Processing 97/567 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,382 DEBUG Processing 268/685 atomic regions from SNP 80100 to 80700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,393 DEBUG Processing 674/732 atomic regions from SNP 202139 to 202739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,445 DEBUG Processing 288/729 atomic regions from SNP 86370 to 86970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,475 DEBUG Processing 225/671 atomic regions from SNP 67239 to 67839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,543 DEBUG Processing 201/605 atomic regions from SNP 60120 to 60720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,560 DEBUG Processing 98/567 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,623 DEBUG Processing 269/685 atomic regions from SNP 80400 to 81000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,642 DEBUG Processing 675/732 atomic regions from SNP 202439 to 203039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,708 DEBUG Processing 226/671 atomic regions from SNP 67539 to 68139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,712 DEBUG Processing 289/729 atomic regions from SNP 86670 to 87270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,766 DEBUG Processing 202/605 atomic regions from SNP 60420 to 61020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,784 DEBUG Processing 99/567 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,873 DEBUG Processing 270/685 atomic regions from SNP 80700 to 81300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,882 DEBUG Processing 676/732 atomic regions from SNP 202739 to 203339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,940 DEBUG Processing 227/671 atomic regions from SNP 67839 to 68439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,981 DEBUG Processing 290/729 atomic regions from SNP 86970 to 87570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,991 DEBUG Processing 203/605 atomic regions from SNP 60720 to 61320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,007 DEBUG Processing 100/567 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,119 DEBUG Processing 677/732 atomic regions from SNP 203039 to 203639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,125 DEBUG Processing 271/685 atomic regions from SNP 81000 to 81600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,168 DEBUG Processing 228/671 atomic regions from SNP 68139 to 68739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,209 DEBUG Processing 204/605 atomic regions from SNP 61020 to 61620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,220 DEBUG Processing 101/567 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,236 DEBUG Processing 291/729 atomic regions from SNP 87270 to 87870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,354 DEBUG Processing 678/732 atomic regions from SNP 203339 to 203939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,381 DEBUG Processing 272/685 atomic regions from SNP 81300 to 81900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,392 DEBUG Processing 229/671 atomic regions from SNP 68439 to 69039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,431 DEBUG Processing 205/605 atomic regions from SNP 61320 to 61920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,436 DEBUG Processing 102/567 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,493 DEBUG Processing 292/729 atomic regions from SNP 87570 to 88170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,592 DEBUG Processing 679/732 atomic regions from SNP 203639 to 204239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,623 DEBUG Processing 230/671 atomic regions from SNP 68739 to 69339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,641 DEBUG Processing 273/685 atomic regions from SNP 81600 to 82200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,650 DEBUG Processing 206/605 atomic regions from SNP 61620 to 62220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,656 DEBUG Processing 103/567 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,741 DEBUG Processing 293/729 atomic regions from SNP 87870 to 88470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,833 DEBUG Processing 680/732 atomic regions from SNP 203939 to 204539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,850 DEBUG Processing 231/671 atomic regions from SNP 69039 to 69639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,875 DEBUG Processing 207/605 atomic regions from SNP 61920 to 62520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,888 DEBUG Processing 104/567 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,903 DEBUG Processing 274/685 atomic regions from SNP 81900 to 82500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,989 DEBUG Processing 294/729 atomic regions from SNP 88170 to 88770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,067 DEBUG Processing 681/732 atomic regions from SNP 204239 to 204839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,077 DEBUG Processing 232/671 atomic regions from SNP 69339 to 69939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,124 DEBUG Processing 208/605 atomic regions from SNP 62220 to 62820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,128 DEBUG Processing 105/567 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,164 DEBUG Processing 275/685 atomic regions from SNP 82200 to 82800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,242 DEBUG Processing 295/729 atomic regions from SNP 88470 to 89070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,300 DEBUG Processing 682/732 atomic regions from SNP 204539 to 205139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,300 DEBUG Processing 233/671 atomic regions from SNP 69639 to 70239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,349 DEBUG Processing 106/567 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,370 DEBUG Processing 209/605 atomic regions from SNP 62520 to 63120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,416 DEBUG Processing 276/685 atomic regions from SNP 82500 to 83100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,478 DEBUG Processing 296/729 atomic regions from SNP 88770 to 89370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,523 DEBUG Processing 234/671 atomic regions from SNP 69939 to 70539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,532 DEBUG Processing 683/732 atomic regions from SNP 204839 to 205439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,567 DEBUG Processing 107/567 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,632 DEBUG Processing 210/605 atomic regions from SNP 62820 to 63420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,652 DEBUG Processing 277/685 atomic regions from SNP 82800 to 83400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,717 DEBUG Processing 297/729 atomic regions from SNP 89070 to 89670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,753 DEBUG Processing 235/671 atomic regions from SNP 70239 to 70839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,771 DEBUG Processing 684/732 atomic regions from SNP 205139 to 205739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,790 DEBUG Processing 108/567 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,873 DEBUG Processing 211/605 atomic regions from SNP 63120 to 63720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,886 DEBUG Processing 278/685 atomic regions from SNP 83100 to 83700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,954 DEBUG Processing 298/729 atomic regions from SNP 89370 to 89970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,978 DEBUG Processing 236/671 atomic regions from SNP 70539 to 71139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,009 DEBUG Processing 685/732 atomic regions from SNP 205439 to 206039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,031 DEBUG Processing 109/567 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,098 DEBUG Processing 212/605 atomic regions from SNP 63420 to 64020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,106 DEBUG Processing 279/685 atomic regions from SNP 83400 to 84000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,196 DEBUG Processing 299/729 atomic regions from SNP 89670 to 90270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,205 DEBUG Processing 237/671 atomic regions from SNP 70839 to 71439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,249 DEBUG Processing 686/732 atomic regions from SNP 205739 to 206339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,261 DEBUG Processing 110/567 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,311 DEBUG Processing 213/605 atomic regions from SNP 63720 to 64320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,330 DEBUG Processing 280/685 atomic regions from SNP 83700 to 84300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,430 DEBUG Processing 238/671 atomic regions from SNP 71139 to 71739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,441 DEBUG Processing 300/729 atomic regions from SNP 89970 to 90570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,485 DEBUG Processing 111/567 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,491 DEBUG Processing 687/732 atomic regions from SNP 206039 to 206639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,528 DEBUG Processing 214/605 atomic regions from SNP 64020 to 64620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,557 DEBUG Processing 281/685 atomic regions from SNP 84000 to 84600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,654 DEBUG Processing 239/671 atomic regions from SNP 71439 to 72039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,686 DEBUG Processing 301/729 atomic regions from SNP 90270 to 90870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,716 DEBUG Processing 112/567 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,735 DEBUG Processing 688/732 atomic regions from SNP 206339 to 206939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,748 DEBUG Processing 215/605 atomic regions from SNP 64320 to 64920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,786 DEBUG Processing 282/685 atomic regions from SNP 84300 to 84900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,871 DEBUG Processing 240/671 atomic regions from SNP 71739 to 72339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,939 DEBUG Processing 302/729 atomic regions from SNP 90570 to 91170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,946 DEBUG Processing 113/567 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,972 DEBUG Processing 216/605 atomic regions from SNP 64620 to 65220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,980 DEBUG Processing 689/732 atomic regions from SNP 206639 to 207239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,032 DEBUG Processing 283/685 atomic regions from SNP 84600 to 85200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,087 DEBUG Processing 241/671 atomic regions from SNP 72039 to 72639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,174 DEBUG Processing 114/567 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,185 DEBUG Processing 303/729 atomic regions from SNP 90870 to 91470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,195 DEBUG Processing 217/605 atomic regions from SNP 64920 to 65520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,222 DEBUG Processing 690/732 atomic regions from SNP 206939 to 207539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,277 DEBUG Processing 284/685 atomic regions from SNP 84900 to 85500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,314 DEBUG Processing 242/671 atomic regions from SNP 72339 to 72939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,391 DEBUG Processing 115/567 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,406 DEBUG Processing 218/605 atomic regions from SNP 65220 to 65820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,441 DEBUG Processing 304/729 atomic regions from SNP 91170 to 91770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,471 DEBUG Processing 691/732 atomic regions from SNP 207239 to 207839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,510 DEBUG Processing 285/685 atomic regions from SNP 85200 to 85800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,536 DEBUG Processing 243/671 atomic regions from SNP 72639 to 73239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,610 DEBUG Processing 116/567 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,613 DEBUG Processing 219/605 atomic regions from SNP 65520 to 66120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,677 DEBUG Processing 305/729 atomic regions from SNP 91470 to 92070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,707 DEBUG Processing 692/732 atomic regions from SNP 207539 to 208139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,743 DEBUG Processing 286/685 atomic regions from SNP 85500 to 86100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,758 DEBUG Processing 244/671 atomic regions from SNP 72939 to 73539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,817 DEBUG Processing 220/605 atomic regions from SNP 65820 to 66420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,817 DEBUG Processing 117/567 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,915 DEBUG Processing 306/729 atomic regions from SNP 91770 to 92370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,942 DEBUG Processing 693/732 atomic regions from SNP 207839 to 208439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,987 DEBUG Processing 245/671 atomic regions from SNP 73239 to 73839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,000 DEBUG Processing 287/685 atomic regions from SNP 85800 to 86400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,033 DEBUG Processing 221/605 atomic regions from SNP 66120 to 66720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,036 DEBUG Processing 118/567 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,167 DEBUG Processing 307/729 atomic regions from SNP 92070 to 92670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,173 DEBUG Processing 694/732 atomic regions from SNP 208139 to 208739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,225 DEBUG Processing 246/671 atomic regions from SNP 73539 to 74139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,244 DEBUG Processing 288/685 atomic regions from SNP 86100 to 86700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,255 DEBUG Processing 222/605 atomic regions from SNP 66420 to 67020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,262 DEBUG Processing 119/567 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,392 DEBUG Processing 308/729 atomic regions from SNP 92370 to 92970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,397 DEBUG Processing 695/732 atomic regions from SNP 208439 to 209039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,451 DEBUG Processing 247/671 atomic regions from SNP 73839 to 74439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,473 DEBUG Processing 223/605 atomic regions from SNP 66720 to 67320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,478 DEBUG Processing 289/685 atomic regions from SNP 86400 to 87000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,482 DEBUG Processing 120/567 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,616 DEBUG Processing 309/729 atomic regions from SNP 92670 to 93270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,620 DEBUG Processing 696/732 atomic regions from SNP 208739 to 209339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,675 DEBUG Processing 248/671 atomic regions from SNP 74139 to 74739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,689 DEBUG Processing 224/605 atomic regions from SNP 67020 to 67620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,696 DEBUG Processing 121/567 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,708 DEBUG Processing 290/685 atomic regions from SNP 86700 to 87300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,845 DEBUG Processing 697/732 atomic regions from SNP 209039 to 209639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,852 DEBUG Processing 310/729 atomic regions from SNP 92970 to 93570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,895 DEBUG Processing 249/671 atomic regions from SNP 74439 to 75039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,901 DEBUG Processing 225/605 atomic regions from SNP 67320 to 67920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,907 DEBUG Processing 122/567 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,933 DEBUG Processing 291/685 atomic regions from SNP 87000 to 87600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,074 DEBUG Processing 698/732 atomic regions from SNP 209339 to 209939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,106 DEBUG Processing 311/729 atomic regions from SNP 93270 to 93870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,112 DEBUG Processing 226/605 atomic regions from SNP 67620 to 68220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,115 DEBUG Processing 250/671 atomic regions from SNP 74739 to 75339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,116 DEBUG Processing 123/567 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,158 DEBUG Processing 292/685 atomic regions from SNP 87300 to 87900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,320 DEBUG Processing 699/732 atomic regions from SNP 209639 to 210239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,333 DEBUG Processing 227/605 atomic regions from SNP 67920 to 68520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,334 DEBUG Processing 124/567 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,343 DEBUG Processing 251/671 atomic regions from SNP 75039 to 75639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,356 DEBUG Processing 312/729 atomic regions from SNP 93570 to 94170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,389 DEBUG Processing 293/685 atomic regions from SNP 87600 to 88200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,556 DEBUG Processing 125/567 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,556 DEBUG Processing 228/605 atomic regions from SNP 68220 to 68820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,573 DEBUG Processing 700/732 atomic regions from SNP 209939 to 210539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,575 DEBUG Processing 252/671 atomic regions from SNP 75339 to 75939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,608 DEBUG Processing 313/729 atomic regions from SNP 93870 to 94470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,631 DEBUG Processing 294/685 atomic regions from SNP 87900 to 88500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,767 DEBUG Processing 126/567 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,769 DEBUG Processing 229/605 atomic regions from SNP 68520 to 69120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,803 DEBUG Processing 253/671 atomic regions from SNP 75639 to 76239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,814 DEBUG Processing 701/732 atomic regions from SNP 210239 to 210839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,863 DEBUG Processing 314/729 atomic regions from SNP 94170 to 94770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,868 DEBUG Processing 295/685 atomic regions from SNP 88200 to 88800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,973 DEBUG Processing 127/567 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,977 DEBUG Processing 230/605 atomic regions from SNP 68820 to 69420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,029 DEBUG Processing 254/671 atomic regions from SNP 75939 to 76539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,060 DEBUG Processing 702/732 atomic regions from SNP 210539 to 211139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,106 DEBUG Processing 296/685 atomic regions from SNP 88500 to 89100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,113 DEBUG Processing 315/729 atomic regions from SNP 94470 to 95070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,183 DEBUG Processing 128/567 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,185 DEBUG Processing 231/605 atomic regions from SNP 69120 to 69720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,246 DEBUG Processing 255/671 atomic regions from SNP 76239 to 76839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,310 DEBUG Processing 703/732 atomic regions from SNP 210839 to 211439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,333 DEBUG Processing 297/685 atomic regions from SNP 88800 to 89400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,350 DEBUG Processing 316/729 atomic regions from SNP 94770 to 95370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,386 DEBUG Processing 129/567 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,397 DEBUG Processing 232/605 atomic regions from SNP 69420 to 70020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,460 DEBUG Processing 256/671 atomic regions from SNP 76539 to 77139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,561 DEBUG Processing 298/685 atomic regions from SNP 89100 to 89700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,565 DEBUG Processing 704/732 atomic regions from SNP 211139 to 211739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,589 DEBUG Processing 317/729 atomic regions from SNP 95070 to 95670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,598 DEBUG Processing 130/567 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,610 DEBUG Processing 233/605 atomic regions from SNP 69720 to 70320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,672 DEBUG Processing 257/671 atomic regions from SNP 76839 to 77439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,785 DEBUG Processing 299/685 atomic regions from SNP 89400 to 90000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,813 DEBUG Processing 705/732 atomic regions from SNP 211439 to 212039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,813 DEBUG Processing 131/567 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,826 DEBUG Processing 234/605 atomic regions from SNP 70020 to 70620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,831 DEBUG Processing 318/729 atomic regions from SNP 95370 to 95970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,887 DEBUG Processing 258/671 atomic regions from SNP 77139 to 77739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,009 DEBUG Processing 300/685 atomic regions from SNP 89700 to 90300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,028 DEBUG Processing 132/567 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,060 DEBUG Processing 235/605 atomic regions from SNP 70320 to 70920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,061 DEBUG Processing 706/732 atomic regions from SNP 211739 to 212339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,072 DEBUG Processing 319/729 atomic regions from SNP 95670 to 96270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,118 DEBUG Processing 259/671 atomic regions from SNP 77439 to 78039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,234 DEBUG Processing 301/685 atomic regions from SNP 90000 to 90600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,243 DEBUG Processing 133/567 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,284 DEBUG Processing 236/605 atomic regions from SNP 70620 to 71220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,313 DEBUG Processing 707/732 atomic regions from SNP 212039 to 212639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,323 DEBUG Processing 320/729 atomic regions from SNP 95970 to 96570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,350 DEBUG Processing 260/671 atomic regions from SNP 77739 to 78339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,448 DEBUG Processing 134/567 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,455 DEBUG Processing 302/685 atomic regions from SNP 90300 to 90900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,497 DEBUG Processing 237/605 atomic regions from SNP 70920 to 71520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,564 DEBUG Processing 321/729 atomic regions from SNP 96270 to 96870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,572 DEBUG Processing 708/732 atomic regions from SNP 212339 to 212939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,576 DEBUG Processing 261/671 atomic regions from SNP 78039 to 78639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,649 DEBUG Processing 135/567 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,685 DEBUG Processing 303/685 atomic regions from SNP 90600 to 91200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,701 DEBUG Processing 238/605 atomic regions from SNP 71220 to 71820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,801 DEBUG Processing 262/671 atomic regions from SNP 78339 to 78939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,805 DEBUG Processing 322/729 atomic regions from SNP 96570 to 97170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,818 DEBUG Processing 709/732 atomic regions from SNP 212639 to 213239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,861 DEBUG Processing 136/567 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,910 DEBUG Processing 239/605 atomic regions from SNP 71520 to 72120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,932 DEBUG Processing 304/685 atomic regions from SNP 90900 to 91500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,040 DEBUG Processing 263/671 atomic regions from SNP 78639 to 79239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,052 DEBUG Processing 323/729 atomic regions from SNP 96870 to 97470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,083 DEBUG Processing 137/567 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,086 DEBUG Processing 710/732 atomic regions from SNP 212939 to 213539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,122 DEBUG Processing 240/605 atomic regions from SNP 71820 to 72420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,180 DEBUG Processing 305/685 atomic regions from SNP 91200 to 91800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,272 DEBUG Processing 264/671 atomic regions from SNP 78939 to 79539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,291 DEBUG Processing 324/729 atomic regions from SNP 97170 to 97770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,301 DEBUG Processing 138/567 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,338 DEBUG Processing 241/605 atomic regions from SNP 72120 to 72720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,350 DEBUG Processing 711/732 atomic regions from SNP 213239 to 213839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,428 DEBUG Processing 306/685 atomic regions from SNP 91500 to 92100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,502 DEBUG Processing 265/671 atomic regions from SNP 79239 to 79839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,517 DEBUG Processing 139/567 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,528 DEBUG Processing 325/729 atomic regions from SNP 97470 to 98070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,559 DEBUG Processing 242/605 atomic regions from SNP 72420 to 73020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,599 DEBUG Processing 712/732 atomic regions from SNP 213539 to 214139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,672 DEBUG Processing 307/685 atomic regions from SNP 91800 to 92400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,727 DEBUG Processing 140/567 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,730 DEBUG Processing 266/671 atomic regions from SNP 79539 to 80139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,768 DEBUG Processing 326/729 atomic regions from SNP 97770 to 98370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,775 DEBUG Processing 243/605 atomic regions from SNP 72720 to 73320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,859 DEBUG Processing 713/732 atomic regions from SNP 213839 to 214439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,937 DEBUG Processing 308/685 atomic regions from SNP 92100 to 92700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,937 DEBUG Processing 141/567 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,964 DEBUG Processing 267/671 atomic regions from SNP 79839 to 80439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,992 DEBUG Processing 244/605 atomic regions from SNP 73020 to 73620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,021 DEBUG Processing 327/729 atomic regions from SNP 98070 to 98670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,103 DEBUG Processing 714/732 atomic regions from SNP 214139 to 214739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,139 DEBUG Processing 142/567 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,182 DEBUG Processing 309/685 atomic regions from SNP 92400 to 93000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,182 DEBUG Processing 268/671 atomic regions from SNP 80139 to 80739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,202 DEBUG Processing 245/605 atomic regions from SNP 73320 to 73920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,276 DEBUG Processing 328/729 atomic regions from SNP 98370 to 98970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,348 DEBUG Processing 143/567 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,352 DEBUG Processing 715/732 atomic regions from SNP 214439 to 215039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,404 DEBUG Processing 269/671 atomic regions from SNP 80439 to 81039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,416 DEBUG Processing 246/605 atomic regions from SNP 73620 to 74220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,439 DEBUG Processing 310/685 atomic regions from SNP 92700 to 93300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,531 DEBUG Processing 329/729 atomic regions from SNP 98670 to 99270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,562 DEBUG Processing 144/567 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,630 DEBUG Processing 247/605 atomic regions from SNP 73920 to 74520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,633 DEBUG Processing 270/671 atomic regions from SNP 80739 to 81339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,638 DEBUG Processing 716/732 atomic regions from SNP 214739 to 215339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,704 DEBUG Processing 311/685 atomic regions from SNP 93000 to 93600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,783 DEBUG Processing 145/567 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,786 DEBUG Processing 330/729 atomic regions from SNP 98970 to 99570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,848 DEBUG Processing 248/605 atomic regions from SNP 74220 to 74820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,863 DEBUG Processing 271/671 atomic regions from SNP 81039 to 81639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,898 DEBUG Processing 717/732 atomic regions from SNP 215039 to 215639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,957 DEBUG Processing 312/685 atomic regions from SNP 93300 to 93900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,000 DEBUG Processing 146/567 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,041 DEBUG Processing 331/729 atomic regions from SNP 99270 to 99870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,069 DEBUG Processing 249/605 atomic regions from SNP 74520 to 75120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,090 DEBUG Processing 272/671 atomic regions from SNP 81339 to 81939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,158 DEBUG Processing 718/732 atomic regions from SNP 215339 to 215939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,201 DEBUG Processing 313/685 atomic regions from SNP 93600 to 94200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,215 DEBUG Processing 147/567 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,295 DEBUG Processing 250/605 atomic regions from SNP 74820 to 75420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,297 DEBUG Processing 332/729 atomic regions from SNP 99570 to 100170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,321 DEBUG Processing 273/671 atomic regions from SNP 81639 to 82239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,420 DEBUG Processing 719/732 atomic regions from SNP 215639 to 216239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,425 DEBUG Processing 148/567 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,441 DEBUG Processing 314/685 atomic regions from SNP 93900 to 94500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,523 DEBUG Processing 251/605 atomic regions from SNP 75120 to 75720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,545 DEBUG Processing 333/729 atomic regions from SNP 99870 to 100470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,551 DEBUG Processing 274/671 atomic regions from SNP 81939 to 82539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,634 DEBUG Processing 149/567 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,671 DEBUG Processing 315/685 atomic regions from SNP 94200 to 94800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,674 DEBUG Processing 720/732 atomic regions from SNP 215939 to 216539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,744 DEBUG Processing 252/605 atomic regions from SNP 75420 to 76020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,779 DEBUG Processing 275/671 atomic regions from SNP 82239 to 82839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,791 DEBUG Processing 334/729 atomic regions from SNP 100170 to 100770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,850 DEBUG Processing 150/567 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,906 DEBUG Processing 316/685 atomic regions from SNP 94500 to 95100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,933 DEBUG Processing 721/732 atomic regions from SNP 216239 to 216839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,972 DEBUG Processing 253/605 atomic regions from SNP 75720 to 76320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,011 DEBUG Processing 276/671 atomic regions from SNP 82539 to 83139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,043 DEBUG Processing 335/729 atomic regions from SNP 100470 to 101070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,058 DEBUG Processing 151/567 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,131 DEBUG Processing 317/685 atomic regions from SNP 94800 to 95400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,184 DEBUG Processing 722/732 atomic regions from SNP 216539 to 217139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,195 DEBUG Processing 254/605 atomic regions from SNP 76020 to 76620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,244 DEBUG Processing 277/671 atomic regions from SNP 82839 to 83439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,272 DEBUG Processing 152/567 atomic regions from SNP 45451 to 46052 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,319 DEBUG Processing 336/729 atomic regions from SNP 100770 to 101370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,358 DEBUG Processing 318/685 atomic regions from SNP 95100 to 95700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,426 DEBUG Processing 255/605 atomic regions from SNP 76320 to 76920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,435 DEBUG Processing 723/732 atomic regions from SNP 216839 to 217439 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,477 DEBUG Processing 278/671 atomic regions from SNP 83139 to 83739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,491 DEBUG Processing 153/567 atomic regions from SNP 45752 to 46353 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,587 DEBUG Processing 337/729 atomic regions from SNP 101070 to 101670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,588 DEBUG Processing 319/685 atomic regions from SNP 95400 to 96000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,652 DEBUG Processing 256/605 atomic regions from SNP 76620 to 77220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,687 DEBUG Processing 724/732 atomic regions from SNP 217139 to 217739 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,707 DEBUG Processing 154/567 atomic regions from SNP 46053 to 46654 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,710 DEBUG Processing 279/671 atomic regions from SNP 83439 to 84039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,815 DEBUG Processing 320/685 atomic regions from SNP 95700 to 96300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,848 DEBUG Processing 338/729 atomic regions from SNP 101370 to 101970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,873 DEBUG Processing 257/605 atomic regions from SNP 76920 to 77520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,924 DEBUG Processing 155/567 atomic regions from SNP 46354 to 46955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,929 DEBUG Processing 725/732 atomic regions from SNP 217439 to 218039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,952 DEBUG Processing 280/671 atomic regions from SNP 83739 to 84339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,042 DEBUG Processing 321/685 atomic regions from SNP 96000 to 96600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,098 DEBUG Processing 258/605 atomic regions from SNP 77220 to 77820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,099 DEBUG Processing 339/729 atomic regions from SNP 101670 to 102270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,143 DEBUG Processing 156/567 atomic regions from SNP 46655 to 47256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,178 DEBUG Processing 726/732 atomic regions from SNP 217739 to 218339 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,185 DEBUG Processing 281/671 atomic regions from SNP 84039 to 84639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,263 DEBUG Processing 322/685 atomic regions from SNP 96300 to 96900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,312 DEBUG Processing 259/605 atomic regions from SNP 77520 to 78120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,345 DEBUG Processing 340/729 atomic regions from SNP 101970 to 102570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,357 DEBUG Processing 157/567 atomic regions from SNP 46956 to 47557 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,415 DEBUG Processing 282/671 atomic regions from SNP 84339 to 84939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,431 DEBUG Processing 727/732 atomic regions from SNP 218039 to 218639 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,490 DEBUG Processing 323/685 atomic regions from SNP 96600 to 97200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,531 DEBUG Processing 260/605 atomic regions from SNP 77820 to 78420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,571 DEBUG Processing 158/567 atomic regions from SNP 47257 to 47858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,597 DEBUG Processing 341/729 atomic regions from SNP 102270 to 102870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,658 DEBUG Processing 283/671 atomic regions from SNP 84639 to 85239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,681 DEBUG Processing 728/732 atomic regions from SNP 218339 to 218939 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,714 DEBUG Processing 324/685 atomic regions from SNP 96900 to 97500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,747 DEBUG Processing 261/605 atomic regions from SNP 78120 to 78720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,782 DEBUG Processing 159/567 atomic regions from SNP 47558 to 48158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,859 DEBUG Processing 342/729 atomic regions from SNP 102570 to 103170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,900 DEBUG Processing 284/671 atomic regions from SNP 84939 to 85539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,929 DEBUG Processing 729/732 atomic regions from SNP 218639 to 219239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,945 DEBUG Processing 325/685 atomic regions from SNP 97200 to 97800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,964 DEBUG Processing 262/605 atomic regions from SNP 78420 to 79020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,991 DEBUG Processing 160/567 atomic regions from SNP 47858 to 48458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,124 DEBUG Processing 343/729 atomic regions from SNP 102870 to 103470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,137 DEBUG Processing 285/671 atomic regions from SNP 85239 to 85839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,170 DEBUG Processing 730/732 atomic regions from SNP 218939 to 219539 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,179 DEBUG Processing 326/685 atomic regions from SNP 97500 to 98100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,185 DEBUG Processing 263/605 atomic regions from SNP 78720 to 79320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,202 DEBUG Processing 161/567 atomic regions from SNP 48158 to 48758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,391 DEBUG Processing 286/671 atomic regions from SNP 85539 to 86139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,405 DEBUG Processing 344/729 atomic regions from SNP 103170 to 103770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,412 DEBUG Processing 264/605 atomic regions from SNP 79020 to 79620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,419 DEBUG Processing 731/732 atomic regions from SNP 219239 to 219839 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,421 DEBUG Processing 162/567 atomic regions from SNP 48458 to 49058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,424 DEBUG Processing 327/685 atomic regions from SNP 97800 to 98400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,642 DEBUG Processing 265/605 atomic regions from SNP 79320 to 79920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,651 DEBUG Processing 287/671 atomic regions from SNP 85839 to 86439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,651 DEBUG Processing 163/567 atomic regions from SNP 48758 to 49358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,670 DEBUG Processing 732/732 atomic regions from SNP 219539 to 220139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,673 DEBUG Processing 345/729 atomic regions from SNP 103470 to 104070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,683 DEBUG Processing 328/685 atomic regions from SNP 98100 to 98700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,820 DEBUG Unique SNPs positions in subchromosome 1: 220140 2025-01-31 09:55:13,867 DEBUG Processing 266/605 atomic regions from SNP 79620 to 80220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,878 DEBUG Processing 164/567 atomic regions from SNP 49058 to 49658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,887 DEBUG Processing 288/671 atomic regions from SNP 86139 to 86739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,936 DEBUG Processing 346/729 atomic regions from SNP 103770 to 104370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,942 DEBUG Processing 329/685 atomic regions from SNP 98400 to 99000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,087 DEBUG Processing 267/605 atomic regions from SNP 79920 to 80520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,104 DEBUG Processing 165/567 atomic regions from SNP 49358 to 49958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,114 DEBUG Processing 289/671 atomic regions from SNP 86439 to 87039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,186 DEBUG Processing 347/729 atomic regions from SNP 104070 to 104670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,195 DEBUG Processing 330/685 atomic regions from SNP 98700 to 99300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,302 DEBUG Processing 268/605 atomic regions from SNP 80220 to 80820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,323 DEBUG Processing 166/567 atomic regions from SNP 49658 to 50258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,338 DEBUG Processing 290/671 atomic regions from SNP 86739 to 87339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,445 DEBUG Processing 348/729 atomic regions from SNP 104370 to 104970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,451 DEBUG Processing 331/685 atomic regions from SNP 99000 to 99600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,527 DEBUG Processing 269/605 atomic regions from SNP 80520 to 81120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,549 DEBUG Processing 167/567 atomic regions from SNP 49958 to 50558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,568 DEBUG Processing 291/671 atomic regions from SNP 87039 to 87639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,689 DEBUG Processing 332/685 atomic regions from SNP 99300 to 99900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,705 DEBUG Processing 349/729 atomic regions from SNP 104670 to 105270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,743 DEBUG Processing 270/605 atomic regions from SNP 80820 to 81420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,769 DEBUG Processing 168/567 atomic regions from SNP 50258 to 50858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,793 DEBUG Processing 292/671 atomic regions from SNP 87339 to 87939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,934 DEBUG Processing 333/685 atomic regions from SNP 99600 to 100200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,954 DEBUG Processing 350/729 atomic regions from SNP 104970 to 105570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,961 DEBUG Processing 271/605 atomic regions from SNP 81120 to 81720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,007 DEBUG Processing 169/567 atomic regions from SNP 50558 to 51158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,035 DEBUG Processing 293/671 atomic regions from SNP 87639 to 88239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,176 DEBUG Processing 334/685 atomic regions from SNP 99900 to 100500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,184 DEBUG Processing 272/605 atomic regions from SNP 81420 to 82020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,212 DEBUG Processing 351/729 atomic regions from SNP 105270 to 105870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,231 DEBUG Processing 170/567 atomic regions from SNP 50858 to 51458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,263 DEBUG Processing 294/671 atomic regions from SNP 87939 to 88539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,402 DEBUG Processing 273/605 atomic regions from SNP 81720 to 82320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,413 DEBUG Processing 335/685 atomic regions from SNP 100200 to 100800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,465 DEBUG Processing 171/567 atomic regions from SNP 51158 to 51758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,470 DEBUG Processing 352/729 atomic regions from SNP 105570 to 106170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,490 DEBUG Processing 295/671 atomic regions from SNP 88239 to 88839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,624 DEBUG Processing 274/605 atomic regions from SNP 82020 to 82620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,665 DEBUG Processing 336/685 atomic regions from SNP 100500 to 101100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,685 DEBUG Processing 172/567 atomic regions from SNP 51458 to 52058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,716 DEBUG Processing 296/671 atomic regions from SNP 88539 to 89139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,723 DEBUG Processing 353/729 atomic regions from SNP 105870 to 106470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,834 DEBUG Processing 275/605 atomic regions from SNP 82320 to 82920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,895 DEBUG Processing 173/567 atomic regions from SNP 51758 to 52358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,910 DEBUG Processing 337/685 atomic regions from SNP 100800 to 101400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,938 DEBUG Processing 297/671 atomic regions from SNP 88839 to 89439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,963 DEBUG Processing 354/729 atomic regions from SNP 106170 to 106770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,050 DEBUG Processing 276/605 atomic regions from SNP 82620 to 83220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,116 DEBUG Processing 174/567 atomic regions from SNP 52058 to 52658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,154 DEBUG Subchromosome time: 207.11926172289532, subchromosome SNPs: 220140 2025-01-31 09:55:16,155 DEBUG Estimated BADs: [0.99, 1.98, 0.99, 3.95, 1.98, 0.66, 1.98, 3.95, 1.98, 0.99, 1.98, 3.95, 1.98] SNP counts: [17544, 3626, 8752, 2670, 29212, 2691, 32155, 16528, 28743, 21638, 25165, 3012, 28404] SNP IDs counts: [17544, 3626, 8752, 2670, 29212, 2691, 32155, 16528, 28743, 21638, 25165, 3012, 28404] Critical gap: 594772bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.44Mbp, 15.38Mbp, 20.51Mbp, 21.92Mbp, 37.98Mbp, 39.56Mbp, 56.71Mbp, 65.35Mbp, 80.98Mbp, 93.74Mbp, 107.25Mbp, 108.81Mbp, 124.60Mbp] 2025-01-31 09:55:16,155 DEBUG chr9 time: 207.11972921993583 s 2025-01-31 09:55:16,161 DEBUG Processing 298/671 atomic regions from SNP 89139 to 89739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,166 DEBUG Processing 338/685 atomic regions from SNP 101100 to 101700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,205 DEBUG Processing 355/729 atomic regions from SNP 106470 to 107070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,262 DEBUG Processing 277/605 atomic regions from SNP 82920 to 83520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,297 DEBUG chr9: Fitting background model for 13 segments 2025-01-31 09:55:16,335 DEBUG Processing 175/567 atomic regions from SNP 52358 to 52958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,386 DEBUG Processing 299/671 atomic regions from SNP 89439 to 90039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,420 DEBUG Processing 339/685 atomic regions from SNP 101400 to 102000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,454 DEBUG Processing 356/729 atomic regions from SNP 106770 to 107370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,477 DEBUG Processing 278/605 atomic regions from SNP 83220 to 83820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,553 DEBUG Processing 176/567 atomic regions from SNP 52658 to 53258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,608 DEBUG Processing 300/671 atomic regions from SNP 89739 to 90339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,661 DEBUG Processing 340/685 atomic regions from SNP 101700 to 102300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,695 DEBUG Processing 279/605 atomic regions from SNP 83520 to 84120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,699 DEBUG Processing 357/729 atomic regions from SNP 107070 to 107670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,790 DEBUG Processing 177/567 atomic regions from SNP 52958 to 53558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,833 DEBUG Processing 301/671 atomic regions from SNP 90039 to 90639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,916 DEBUG Processing 341/685 atomic regions from SNP 102000 to 102600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,930 DEBUG Processing 280/605 atomic regions from SNP 83820 to 84420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,966 DEBUG Processing 358/729 atomic regions from SNP 107370 to 107970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,044 DEBUG Processing 178/567 atomic regions from SNP 53258 to 53858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,054 DEBUG Processing 302/671 atomic regions from SNP 90339 to 90939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,149 DEBUG Processing 281/605 atomic regions from SNP 84120 to 84720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,164 DEBUG Processing 342/685 atomic regions from SNP 102300 to 102900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,220 DEBUG Processing 359/729 atomic regions from SNP 107670 to 108270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,278 DEBUG Processing 303/671 atomic regions from SNP 90639 to 91239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,281 DEBUG Processing 179/567 atomic regions from SNP 53558 to 54158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,377 DEBUG Processing 282/605 atomic regions from SNP 84420 to 85020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,421 DEBUG Processing 343/685 atomic regions from SNP 102600 to 103200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,473 DEBUG Processing 360/729 atomic regions from SNP 107970 to 108570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,510 DEBUG Processing 180/567 atomic regions from SNP 53858 to 54458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,511 DEBUG Processing 304/671 atomic regions from SNP 90939 to 91539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,608 DEBUG Processing 283/605 atomic regions from SNP 84720 to 85320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,670 DEBUG Processing 344/685 atomic regions from SNP 102900 to 103500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,720 DEBUG Processing 361/729 atomic regions from SNP 108270 to 108870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,740 DEBUG Processing 305/671 atomic regions from SNP 91239 to 91839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,741 DEBUG Processing 181/567 atomic regions from SNP 54158 to 54758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,828 DEBUG Processing 284/605 atomic regions from SNP 85020 to 85620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,907 DEBUG Processing 345/685 atomic regions from SNP 103200 to 103800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,967 DEBUG Processing 362/729 atomic regions from SNP 108570 to 109170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,968 DEBUG Processing 306/671 atomic regions from SNP 91539 to 92139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,972 DEBUG Processing 182/567 atomic regions from SNP 54458 to 55058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,048 DEBUG Processing 285/605 atomic regions from SNP 85320 to 85920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,148 DEBUG Processing 346/685 atomic regions from SNP 103500 to 104100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,193 DEBUG Processing 183/567 atomic regions from SNP 54758 to 55358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,200 DEBUG Processing 307/671 atomic regions from SNP 91839 to 92439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,213 DEBUG Processing 363/729 atomic regions from SNP 108870 to 109470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,255 DEBUG Processing 286/605 atomic regions from SNP 85620 to 86220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,381 DEBUG Processing 347/685 atomic regions from SNP 103800 to 104400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,417 DEBUG Processing 184/567 atomic regions from SNP 55058 to 55658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,449 DEBUG Processing 308/671 atomic regions from SNP 92139 to 92739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,456 DEBUG Processing 364/729 atomic regions from SNP 109170 to 109770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,471 DEBUG Processing 287/605 atomic regions from SNP 85920 to 86520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,616 DEBUG Processing 348/685 atomic regions from SNP 104100 to 104700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,645 DEBUG Processing 185/567 atomic regions from SNP 55358 to 55958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,682 DEBUG Processing 309/671 atomic regions from SNP 92439 to 93039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,697 DEBUG Processing 288/605 atomic regions from SNP 86220 to 86820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,706 DEBUG Processing 365/729 atomic regions from SNP 109470 to 110070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,855 DEBUG Processing 349/685 atomic regions from SNP 104400 to 105000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,876 DEBUG Processing 186/567 atomic regions from SNP 55658 to 56258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,915 DEBUG Processing 310/671 atomic regions from SNP 92739 to 93339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,921 DEBUG Processing 289/605 atomic regions from SNP 86520 to 87120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,952 DEBUG Processing 366/729 atomic regions from SNP 109770 to 110370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,092 DEBUG Processing 350/685 atomic regions from SNP 104700 to 105300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,111 DEBUG Processing 187/567 atomic regions from SNP 55958 to 56558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,135 DEBUG Processing 290/605 atomic regions from SNP 86820 to 87420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,141 DEBUG Processing 311/671 atomic regions from SNP 93039 to 93639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,192 DEBUG Processing 367/729 atomic regions from SNP 110070 to 110670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,324 DEBUG Processing 351/685 atomic regions from SNP 105000 to 105600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,348 DEBUG Processing 188/567 atomic regions from SNP 56258 to 56858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,356 DEBUG Processing 291/605 atomic regions from SNP 87120 to 87720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,373 DEBUG Processing 312/671 atomic regions from SNP 93339 to 93939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,433 DEBUG Processing 368/729 atomic regions from SNP 110370 to 110970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,572 DEBUG Processing 352/685 atomic regions from SNP 105300 to 105900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,587 DEBUG Processing 189/567 atomic regions from SNP 56558 to 57158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,589 DEBUG Processing 292/605 atomic regions from SNP 87420 to 88020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,620 DEBUG Processing 313/671 atomic regions from SNP 93639 to 94239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,682 DEBUG Processing 369/729 atomic regions from SNP 110670 to 111270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,810 DEBUG Processing 353/685 atomic regions from SNP 105600 to 106200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,813 DEBUG Processing 190/567 atomic regions from SNP 56858 to 57458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,815 DEBUG Processing 293/605 atomic regions from SNP 87720 to 88320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,851 DEBUG Processing 314/671 atomic regions from SNP 93939 to 94539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,921 DEBUG Processing 370/729 atomic regions from SNP 110970 to 111570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,043 DEBUG Processing 191/567 atomic regions from SNP 57158 to 57758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,044 DEBUG Processing 294/605 atomic regions from SNP 88020 to 88620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,071 DEBUG Processing 354/685 atomic regions from SNP 105900 to 106500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,088 DEBUG Processing 315/671 atomic regions from SNP 94239 to 94839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,159 DEBUG Processing 371/729 atomic regions from SNP 111270 to 111870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,262 DEBUG Processing 192/567 atomic regions from SNP 57458 to 58058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,269 DEBUG Processing 295/605 atomic regions from SNP 88320 to 88920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,313 DEBUG Processing 316/671 atomic regions from SNP 94539 to 95139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,318 DEBUG Processing 355/685 atomic regions from SNP 106200 to 106800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,389 DEBUG Processing 372/729 atomic regions from SNP 111570 to 112170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,487 DEBUG Processing 296/605 atomic regions from SNP 88620 to 89220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,489 DEBUG Processing 193/567 atomic regions from SNP 57758 to 58358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,545 DEBUG Processing 317/671 atomic regions from SNP 94839 to 95439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,579 DEBUG Processing 356/685 atomic regions from SNP 106500 to 107100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,636 DEBUG Processing 373/729 atomic regions from SNP 111870 to 112470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,721 DEBUG Processing 297/605 atomic regions from SNP 88920 to 89520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,736 DEBUG Processing 194/567 atomic regions from SNP 58058 to 58658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,793 DEBUG Processing 318/671 atomic regions from SNP 95139 to 95739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,837 DEBUG Processing 357/685 atomic regions from SNP 106800 to 107400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,881 DEBUG Processing 374/729 atomic regions from SNP 112170 to 112770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,941 DEBUG Processing 298/605 atomic regions from SNP 89220 to 89820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,972 DEBUG Processing 195/567 atomic regions from SNP 58358 to 58958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,030 DEBUG Processing 319/671 atomic regions from SNP 95439 to 96039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,102 DEBUG Processing 358/685 atomic regions from SNP 107100 to 107700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,141 DEBUG Processing 375/729 atomic regions from SNP 112470 to 113070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,172 DEBUG Processing 299/605 atomic regions from SNP 89520 to 90120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,222 DEBUG Processing 196/567 atomic regions from SNP 58658 to 59258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,280 DEBUG Processing 320/671 atomic regions from SNP 95739 to 96339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,360 DEBUG Processing 359/685 atomic regions from SNP 107400 to 108000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,387 DEBUG Processing 300/605 atomic regions from SNP 89820 to 90420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,399 DEBUG Processing 376/729 atomic regions from SNP 112770 to 113370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,458 DEBUG Processing 197/567 atomic regions from SNP 58958 to 59558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,514 DEBUG Processing 321/671 atomic regions from SNP 96039 to 96639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,604 DEBUG Processing 301/605 atomic regions from SNP 90120 to 90720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,610 DEBUG Processing 360/685 atomic regions from SNP 107700 to 108300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,640 DEBUG Processing 377/729 atomic regions from SNP 113070 to 113670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,687 DEBUG Processing 198/567 atomic regions from SNP 59258 to 59858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,742 DEBUG Processing 322/671 atomic regions from SNP 96339 to 96939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,816 DEBUG Processing 302/605 atomic regions from SNP 90420 to 91020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,859 DEBUG Processing 361/685 atomic regions from SNP 108000 to 108600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,885 DEBUG Processing 378/729 atomic regions from SNP 113370 to 113970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,918 DEBUG Processing 199/567 atomic regions from SNP 59558 to 60158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,975 DEBUG Processing 323/671 atomic regions from SNP 96639 to 97239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,036 DEBUG Processing 303/605 atomic regions from SNP 90720 to 91320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,116 DEBUG Processing 362/685 atomic regions from SNP 108300 to 108900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,132 DEBUG Processing 379/729 atomic regions from SNP 113670 to 114270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,140 DEBUG Processing 200/567 atomic regions from SNP 59858 to 60458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,211 DEBUG Processing 324/671 atomic regions from SNP 96939 to 97539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,256 DEBUG Processing 304/605 atomic regions from SNP 91020 to 91620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,360 DEBUG Processing 201/567 atomic regions from SNP 60158 to 60758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,372 DEBUG Processing 363/685 atomic regions from SNP 108600 to 109200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,378 DEBUG Processing 380/729 atomic regions from SNP 113970 to 114570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,445 DEBUG Processing 325/671 atomic regions from SNP 97239 to 97839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,476 DEBUG Processing 305/605 atomic regions from SNP 91320 to 91920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,581 DEBUG Processing 202/567 atomic regions from SNP 60458 to 61058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,620 DEBUG Processing 364/685 atomic regions from SNP 108900 to 109500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,628 DEBUG Processing 381/729 atomic regions from SNP 114270 to 114870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,684 DEBUG Processing 326/671 atomic regions from SNP 97539 to 98139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,697 DEBUG Processing 306/605 atomic regions from SNP 91620 to 92220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,801 DEBUG Processing 203/567 atomic regions from SNP 60758 to 61358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,856 DEBUG Processing 365/685 atomic regions from SNP 109200 to 109800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,873 DEBUG Processing 382/729 atomic regions from SNP 114570 to 115170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,918 DEBUG Processing 327/671 atomic regions from SNP 97839 to 98439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,925 DEBUG Processing 307/605 atomic regions from SNP 91920 to 92520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,013 DEBUG Processing 204/567 atomic regions from SNP 61058 to 61658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,094 DEBUG Processing 366/685 atomic regions from SNP 109500 to 110100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,130 DEBUG Processing 383/729 atomic regions from SNP 114870 to 115470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,159 DEBUG Processing 328/671 atomic regions from SNP 98139 to 98739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,162 DEBUG Processing 308/605 atomic regions from SNP 92220 to 92820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,229 DEBUG Processing 205/567 atomic regions from SNP 61358 to 61958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,348 DEBUG Processing 367/685 atomic regions from SNP 109800 to 110400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,383 DEBUG Processing 384/729 atomic regions from SNP 115170 to 115770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,390 DEBUG Processing 309/605 atomic regions from SNP 92520 to 93120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,401 DEBUG Processing 329/671 atomic regions from SNP 98439 to 99039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,447 DEBUG Processing 206/567 atomic regions from SNP 61658 to 62258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,578 DEBUG Processing 368/685 atomic regions from SNP 110100 to 110700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,619 DEBUG Processing 310/605 atomic regions from SNP 92820 to 93420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,633 DEBUG Processing 385/729 atomic regions from SNP 115470 to 116070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,638 DEBUG Processing 330/671 atomic regions from SNP 98739 to 99339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,670 DEBUG Processing 207/567 atomic regions from SNP 61958 to 62558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,806 DEBUG Processing 369/685 atomic regions from SNP 110400 to 111000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,842 DEBUG Processing 311/605 atomic regions from SNP 93120 to 93720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,878 DEBUG Processing 331/671 atomic regions from SNP 99039 to 99639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,889 DEBUG Processing 386/729 atomic regions from SNP 115770 to 116370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,897 DEBUG Processing 208/567 atomic regions from SNP 62258 to 62858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,030 DEBUG Processing 370/685 atomic regions from SNP 110700 to 111300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,057 DEBUG Processing 312/605 atomic regions from SNP 93420 to 94020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,113 DEBUG Processing 332/671 atomic regions from SNP 99339 to 99939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,124 DEBUG Processing 209/567 atomic regions from SNP 62558 to 63158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,138 DEBUG Processing 387/729 atomic regions from SNP 116070 to 116670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,255 DEBUG Processing 371/685 atomic regions from SNP 111000 to 111600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,267 DEBUG Processing 313/605 atomic regions from SNP 93720 to 94320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,341 DEBUG Processing 333/671 atomic regions from SNP 99639 to 100239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,356 DEBUG Processing 210/567 atomic regions from SNP 62858 to 63458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,388 DEBUG Processing 388/729 atomic regions from SNP 116370 to 116970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,486 DEBUG Processing 372/685 atomic regions from SNP 111300 to 111900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,486 DEBUG Processing 314/605 atomic regions from SNP 94020 to 94620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,572 DEBUG Processing 334/671 atomic regions from SNP 99939 to 100539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,586 DEBUG Processing 211/567 atomic regions from SNP 63158 to 63758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,634 DEBUG Processing 389/729 atomic regions from SNP 116670 to 117270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,699 DEBUG Processing 315/605 atomic regions from SNP 94320 to 94920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,712 DEBUG Processing 373/685 atomic regions from SNP 111600 to 112200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,792 DEBUG Processing 335/671 atomic regions from SNP 100239 to 100839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,811 DEBUG Processing 212/567 atomic regions from SNP 63458 to 64058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,874 DEBUG Processing 390/729 atomic regions from SNP 116970 to 117570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,920 DEBUG Processing 316/605 atomic regions from SNP 94620 to 95220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,947 DEBUG Processing 374/685 atomic regions from SNP 111900 to 112500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,015 DEBUG Processing 336/671 atomic regions from SNP 100539 to 101139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,031 DEBUG Processing 213/567 atomic regions from SNP 63758 to 64358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,134 DEBUG Processing 391/729 atomic regions from SNP 117270 to 117870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,151 DEBUG Processing 317/605 atomic regions from SNP 94920 to 95520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,186 DEBUG Processing 375/685 atomic regions from SNP 112200 to 112800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,244 DEBUG Processing 337/671 atomic regions from SNP 100839 to 101439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,263 DEBUG Processing 214/567 atomic regions from SNP 64058 to 64658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,373 DEBUG Processing 318/605 atomic regions from SNP 95220 to 95820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,380 DEBUG Processing 392/729 atomic regions from SNP 117570 to 118170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,429 DEBUG Processing 376/685 atomic regions from SNP 112500 to 113100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,477 DEBUG Processing 338/671 atomic regions from SNP 101139 to 101739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,496 DEBUG Processing 215/567 atomic regions from SNP 64358 to 64958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,598 DEBUG Processing 319/605 atomic regions from SNP 95520 to 96120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,633 DEBUG Processing 393/729 atomic regions from SNP 117870 to 118470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,673 DEBUG Processing 377/685 atomic regions from SNP 112800 to 113400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,736 DEBUG Processing 216/567 atomic regions from SNP 64658 to 65258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,736 DEBUG Processing 339/671 atomic regions from SNP 101439 to 102039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,825 DEBUG Processing 320/605 atomic regions from SNP 95820 to 96420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,895 DEBUG Processing 394/729 atomic regions from SNP 118170 to 118770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,913 DEBUG Processing 378/685 atomic regions from SNP 113100 to 113700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,966 DEBUG Processing 217/567 atomic regions from SNP 64958 to 65558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,973 DEBUG Processing 340/671 atomic regions from SNP 101739 to 102339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,043 DEBUG Processing 321/605 atomic regions from SNP 96120 to 96720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,143 DEBUG Processing 379/685 atomic regions from SNP 113400 to 114000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,145 DEBUG Processing 395/729 atomic regions from SNP 118470 to 119070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,183 DEBUG Processing 218/567 atomic regions from SNP 65258 to 65858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,202 DEBUG Processing 341/671 atomic regions from SNP 102039 to 102639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,266 DEBUG Processing 322/605 atomic regions from SNP 96420 to 97020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,370 DEBUG Processing 380/685 atomic regions from SNP 113700 to 114300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,397 DEBUG Processing 219/567 atomic regions from SNP 65558 to 66158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,403 DEBUG Processing 396/729 atomic regions from SNP 118770 to 119370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,428 DEBUG Processing 342/671 atomic regions from SNP 102339 to 102939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,508 DEBUG Processing 323/605 atomic regions from SNP 96720 to 97320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,599 DEBUG Processing 381/685 atomic regions from SNP 114000 to 114600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,612 DEBUG Processing 220/567 atomic regions from SNP 65858 to 66458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,655 DEBUG Processing 343/671 atomic regions from SNP 102639 to 103239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,656 DEBUG Processing 397/729 atomic regions from SNP 119070 to 119670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,756 DEBUG Processing 324/605 atomic regions from SNP 97020 to 97620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,824 DEBUG Processing 221/567 atomic regions from SNP 66158 to 66758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,827 DEBUG Processing 382/685 atomic regions from SNP 114300 to 114900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,880 DEBUG Processing 344/671 atomic regions from SNP 102939 to 103539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,913 DEBUG Processing 398/729 atomic regions from SNP 119370 to 119970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,995 DEBUG Processing 325/605 atomic regions from SNP 97320 to 97920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,035 DEBUG Processing 222/567 atomic regions from SNP 66458 to 67058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,074 DEBUG Processing 383/685 atomic regions from SNP 114600 to 115200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,105 DEBUG Processing 345/671 atomic regions from SNP 103239 to 103839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,186 DEBUG Processing 399/729 atomic regions from SNP 119670 to 120270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,235 DEBUG Processing 326/605 atomic regions from SNP 97620 to 98220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,249 DEBUG Processing 223/567 atomic regions from SNP 66758 to 67358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,328 DEBUG Processing 346/671 atomic regions from SNP 103539 to 104139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,334 DEBUG Processing 384/685 atomic regions from SNP 114900 to 115500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,464 DEBUG Processing 400/729 atomic regions from SNP 119970 to 120570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,473 DEBUG Processing 224/567 atomic regions from SNP 67058 to 67658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,477 DEBUG Processing 327/605 atomic regions from SNP 97920 to 98520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,549 DEBUG Processing 347/671 atomic regions from SNP 103839 to 104439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,579 DEBUG Processing 385/685 atomic regions from SNP 115200 to 115800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,689 DEBUG Processing 225/567 atomic regions from SNP 67358 to 67958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,722 DEBUG Processing 328/605 atomic regions from SNP 98220 to 98820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,735 DEBUG Processing 401/729 atomic regions from SNP 120270 to 120870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,772 DEBUG Processing 348/671 atomic regions from SNP 104139 to 104739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,807 DEBUG Processing 386/685 atomic regions from SNP 115500 to 116100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,898 DEBUG Processing 226/567 atomic regions from SNP 67658 to 68258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,963 DEBUG Processing 329/605 atomic regions from SNP 98520 to 99120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,995 DEBUG Processing 349/671 atomic regions from SNP 104439 to 105039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,007 DEBUG Processing 402/729 atomic regions from SNP 120570 to 121170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,034 DEBUG Processing 387/685 atomic regions from SNP 115800 to 116400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,115 DEBUG Processing 227/567 atomic regions from SNP 67958 to 68558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,214 DEBUG Processing 330/605 atomic regions from SNP 98820 to 99420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,229 DEBUG Processing 350/671 atomic regions from SNP 104739 to 105339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,268 DEBUG Processing 388/685 atomic regions from SNP 116100 to 116700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,283 DEBUG Processing 403/729 atomic regions from SNP 120870 to 121470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,334 DEBUG Processing 228/567 atomic regions from SNP 68258 to 68858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,458 DEBUG Processing 351/671 atomic regions from SNP 105039 to 105639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,461 DEBUG Processing 331/605 atomic regions from SNP 99120 to 99720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,494 DEBUG Processing 389/685 atomic regions from SNP 116400 to 117000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,544 DEBUG Processing 229/567 atomic regions from SNP 68558 to 69158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,558 DEBUG Processing 404/729 atomic regions from SNP 121170 to 121770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,682 DEBUG Processing 352/671 atomic regions from SNP 105339 to 105939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,701 DEBUG Processing 332/605 atomic regions from SNP 99420 to 100020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,725 DEBUG Processing 390/685 atomic regions from SNP 116700 to 117300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,750 DEBUG Processing 230/567 atomic regions from SNP 68858 to 69458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,830 DEBUG Processing 405/729 atomic regions from SNP 121470 to 122070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,913 DEBUG Processing 353/671 atomic regions from SNP 105639 to 106239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,935 DEBUG Processing 333/605 atomic regions from SNP 99720 to 100320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,949 DEBUG Processing 391/685 atomic regions from SNP 117000 to 117600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,956 DEBUG Processing 231/567 atomic regions from SNP 69158 to 69758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,079 DEBUG Processing 406/729 atomic regions from SNP 121770 to 122370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,140 DEBUG Processing 354/671 atomic regions from SNP 105939 to 106539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,154 DEBUG Processing 334/605 atomic regions from SNP 100020 to 100620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,163 DEBUG Processing 232/567 atomic regions from SNP 69458 to 70058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,173 DEBUG Processing 392/685 atomic regions from SNP 117300 to 117900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,342 DEBUG Processing 407/729 atomic regions from SNP 122070 to 122670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,373 DEBUG Processing 233/567 atomic regions from SNP 69758 to 70358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,375 DEBUG Processing 335/605 atomic regions from SNP 100320 to 100920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,383 DEBUG Processing 355/671 atomic regions from SNP 106239 to 106839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,399 DEBUG Processing 393/685 atomic regions from SNP 117600 to 118200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,586 DEBUG Processing 234/567 atomic regions from SNP 70058 to 70658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,595 DEBUG Processing 336/605 atomic regions from SNP 100620 to 101220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,597 DEBUG Processing 408/729 atomic regions from SNP 122370 to 122970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,616 DEBUG Processing 356/671 atomic regions from SNP 106539 to 107139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,632 DEBUG Processing 394/685 atomic regions from SNP 117900 to 118500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,808 DEBUG Processing 235/567 atomic regions from SNP 70358 to 70958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,817 DEBUG Processing 337/605 atomic regions from SNP 100920 to 101520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,850 DEBUG Processing 357/671 atomic regions from SNP 106839 to 107439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,873 DEBUG Processing 395/685 atomic regions from SNP 118200 to 118800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,879 DEBUG Processing 409/729 atomic regions from SNP 122670 to 123270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,021 DEBUG Processing 236/567 atomic regions from SNP 70658 to 71258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,034 DEBUG Processing 338/605 atomic regions from SNP 101220 to 101820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,083 DEBUG Processing 358/671 atomic regions from SNP 107139 to 107739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,110 DEBUG Processing 396/685 atomic regions from SNP 118500 to 119100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,153 DEBUG Processing 410/729 atomic regions from SNP 122970 to 123570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,234 DEBUG Processing 237/567 atomic regions from SNP 70958 to 71558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,250 DEBUG Processing 339/605 atomic regions from SNP 101520 to 102120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,310 DEBUG Processing 359/671 atomic regions from SNP 107439 to 108039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,338 DEBUG Processing 397/685 atomic regions from SNP 118800 to 119400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,396 DEBUG Processing 411/729 atomic regions from SNP 123270 to 123870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,447 DEBUG Processing 238/567 atomic regions from SNP 71258 to 71858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,463 DEBUG Processing 340/605 atomic regions from SNP 101820 to 102420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,540 DEBUG Processing 360/671 atomic regions from SNP 107739 to 108339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,571 DEBUG Processing 398/685 atomic regions from SNP 119100 to 119700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,640 DEBUG Processing 412/729 atomic regions from SNP 123570 to 124170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,658 DEBUG Processing 239/567 atomic regions from SNP 71558 to 72158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,679 DEBUG Processing 341/605 atomic regions from SNP 102120 to 102720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,751 DEBUG Processing 361/671 atomic regions from SNP 108039 to 108639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,789 DEBUG Processing 399/685 atomic regions from SNP 119400 to 120000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,874 DEBUG Processing 240/567 atomic regions from SNP 71858 to 72458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,882 DEBUG Processing 413/729 atomic regions from SNP 123870 to 124470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,899 DEBUG Processing 342/605 atomic regions from SNP 102420 to 103020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,974 DEBUG Processing 362/671 atomic regions from SNP 108339 to 108939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,019 DEBUG Processing 400/685 atomic regions from SNP 119700 to 120300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,094 DEBUG Processing 241/567 atomic regions from SNP 72158 to 72758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,124 DEBUG Processing 343/605 atomic regions from SNP 102720 to 103320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,131 DEBUG Processing 414/729 atomic regions from SNP 124170 to 124770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,204 DEBUG Processing 363/671 atomic regions from SNP 108639 to 109239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,253 DEBUG Processing 401/685 atomic regions from SNP 120000 to 120600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,310 DEBUG Processing 242/567 atomic regions from SNP 72458 to 73058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,347 DEBUG Processing 344/605 atomic regions from SNP 103020 to 103620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,379 DEBUG Processing 415/729 atomic regions from SNP 124470 to 125070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,428 DEBUG Processing 364/671 atomic regions from SNP 108939 to 109539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,493 DEBUG Processing 402/685 atomic regions from SNP 120300 to 120900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,530 DEBUG Processing 243/567 atomic regions from SNP 72758 to 73358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,571 DEBUG Processing 345/605 atomic regions from SNP 103320 to 103920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,626 DEBUG Processing 416/729 atomic regions from SNP 124770 to 125370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,663 DEBUG Processing 365/671 atomic regions from SNP 109239 to 109839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,727 DEBUG Processing 403/685 atomic regions from SNP 120600 to 121200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,749 DEBUG Processing 244/567 atomic regions from SNP 73058 to 73658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,792 DEBUG Processing 346/605 atomic regions from SNP 103620 to 104220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,878 DEBUG Processing 417/729 atomic regions from SNP 125070 to 125670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,913 DEBUG Processing 366/671 atomic regions from SNP 109539 to 110139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,959 DEBUG Processing 404/685 atomic regions from SNP 120900 to 121500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,962 DEBUG Processing 245/567 atomic regions from SNP 73358 to 73958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,010 DEBUG Processing 347/605 atomic regions from SNP 103920 to 104520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,122 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:55:32,137 DEBUG Processing 418/729 atomic regions from SNP 125370 to 125970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,149 DEBUG Processing 367/671 atomic regions from SNP 109839 to 110439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,173 DEBUG Processing 246/567 atomic regions from SNP 73658 to 74258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,193 DEBUG Processing 405/685 atomic regions from SNP 121200 to 121800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,225 DEBUG Processing 348/605 atomic regions from SNP 104220 to 104820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,392 DEBUG Processing 368/671 atomic regions from SNP 110139 to 110739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,394 DEBUG Processing 247/567 atomic regions from SNP 73958 to 74558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,400 DEBUG Processing 419/729 atomic regions from SNP 125670 to 126270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,443 DEBUG Processing 406/685 atomic regions from SNP 121500 to 122100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,454 DEBUG Processing 349/605 atomic regions from SNP 104520 to 105120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,622 DEBUG Processing 248/567 atomic regions from SNP 74258 to 74858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,642 DEBUG Processing 369/671 atomic regions from SNP 110439 to 111039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,671 DEBUG Processing 420/729 atomic regions from SNP 125970 to 126570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,689 DEBUG Processing 350/605 atomic regions from SNP 104820 to 105420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,709 DEBUG Processing 407/685 atomic regions from SNP 121800 to 122400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,834 DEBUG Processing 249/567 atomic regions from SNP 74558 to 75158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,893 DEBUG Processing 370/671 atomic regions from SNP 110739 to 111339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,923 DEBUG Processing 351/605 atomic regions from SNP 105120 to 105720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,935 DEBUG Processing 421/729 atomic regions from SNP 126270 to 126870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,982 DEBUG Processing 408/685 atomic regions from SNP 122100 to 122700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,048 DEBUG Processing 250/567 atomic regions from SNP 74858 to 75458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,149 DEBUG Processing 352/605 atomic regions from SNP 105420 to 106020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,151 DEBUG Processing 371/671 atomic regions from SNP 111039 to 111639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,190 DEBUG Processing 422/729 atomic regions from SNP 126570 to 127170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,257 DEBUG Processing 409/685 atomic regions from SNP 122400 to 123000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,267 DEBUG Processing 251/567 atomic regions from SNP 75158 to 75758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,367 DEBUG Processing 353/605 atomic regions from SNP 105720 to 106320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,400 DEBUG Processing 372/671 atomic regions from SNP 111339 to 111939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,451 DEBUG Processing 423/729 atomic regions from SNP 126870 to 127470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,490 DEBUG Processing 252/567 atomic regions from SNP 75458 to 76058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,530 DEBUG Processing 410/685 atomic regions from SNP 122700 to 123300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,581 DEBUG Processing 354/605 atomic regions from SNP 106020 to 106620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,646 DEBUG Processing 373/671 atomic regions from SNP 111639 to 112239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,717 DEBUG Processing 253/567 atomic regions from SNP 75758 to 76358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,728 DEBUG Processing 424/729 atomic regions from SNP 127170 to 127770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,800 DEBUG Processing 355/605 atomic regions from SNP 106320 to 106920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,801 DEBUG Processing 411/685 atomic regions from SNP 123000 to 123600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,881 DEBUG Processing 374/671 atomic regions from SNP 111939 to 112539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,945 DEBUG Processing 254/567 atomic regions from SNP 76058 to 76658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,006 DEBUG Processing 425/729 atomic regions from SNP 127470 to 128070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,025 DEBUG Processing 356/605 atomic regions from SNP 106620 to 107220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,073 DEBUG Processing 412/685 atomic regions from SNP 123300 to 123900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,114 DEBUG Processing 375/671 atomic regions from SNP 112239 to 112839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,169 DEBUG Processing 255/567 atomic regions from SNP 76358 to 76958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,252 DEBUG Processing 357/605 atomic regions from SNP 106920 to 107520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,261 DEBUG Processing 426/729 atomic regions from SNP 127770 to 128370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,334 DEBUG Processing 413/685 atomic regions from SNP 123600 to 124200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,347 DEBUG Processing 376/671 atomic regions from SNP 112539 to 113139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,390 DEBUG Processing 256/567 atomic regions from SNP 76658 to 77258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,482 DEBUG Processing 358/605 atomic regions from SNP 107220 to 107820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,516 DEBUG Processing 427/729 atomic regions from SNP 128070 to 128670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,583 DEBUG Processing 414/685 atomic regions from SNP 123900 to 124500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,604 DEBUG Processing 377/671 atomic regions from SNP 112839 to 113439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,612 DEBUG Processing 257/567 atomic regions from SNP 76958 to 77558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,710 DEBUG Processing 359/605 atomic regions from SNP 107520 to 108120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,774 DEBUG Processing 428/729 atomic regions from SNP 128370 to 128970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,828 DEBUG Processing 258/567 atomic regions from SNP 77258 to 77858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,830 DEBUG Processing 415/685 atomic regions from SNP 124200 to 124800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,845 DEBUG Processing 378/671 atomic regions from SNP 113139 to 113739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,947 DEBUG Processing 360/605 atomic regions from SNP 107820 to 108420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,027 DEBUG Processing 429/729 atomic regions from SNP 128670 to 129270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,055 DEBUG Processing 259/567 atomic regions from SNP 77558 to 78158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,072 DEBUG Processing 416/685 atomic regions from SNP 124500 to 125100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,083 DEBUG Processing 379/671 atomic regions from SNP 113439 to 114039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,192 DEBUG Processing 361/605 atomic regions from SNP 108120 to 108720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,280 DEBUG Processing 430/729 atomic regions from SNP 128970 to 129570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,280 DEBUG Processing 260/567 atomic regions from SNP 77858 to 78458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,315 DEBUG Processing 417/685 atomic regions from SNP 124800 to 125400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,323 DEBUG Processing 380/671 atomic regions from SNP 113739 to 114339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,426 DEBUG Processing 362/605 atomic regions from SNP 108420 to 109020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,504 DEBUG Processing 261/567 atomic regions from SNP 78158 to 78758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,530 DEBUG Processing 431/729 atomic regions from SNP 129270 to 129870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,550 DEBUG Processing 418/685 atomic regions from SNP 125100 to 125700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,557 DEBUG Processing 381/671 atomic regions from SNP 114039 to 114639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,660 DEBUG Processing 363/605 atomic regions from SNP 108720 to 109320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,726 DEBUG Processing 262/567 atomic regions from SNP 78458 to 79058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,792 DEBUG Processing 419/685 atomic regions from SNP 125400 to 126000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,793 DEBUG Processing 432/729 atomic regions from SNP 129570 to 130170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,796 DEBUG Processing 382/671 atomic regions from SNP 114339 to 114939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,878 DEBUG Processing 364/605 atomic regions from SNP 109020 to 109620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,938 DEBUG Processing 263/567 atomic regions from SNP 78758 to 79358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,025 DEBUG Processing 420/685 atomic regions from SNP 125700 to 126300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,046 DEBUG Processing 383/671 atomic regions from SNP 114639 to 115239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,047 DEBUG Processing 433/729 atomic regions from SNP 129870 to 130470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,092 DEBUG Processing 365/605 atomic regions from SNP 109320 to 109920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,152 DEBUG Processing 264/567 atomic regions from SNP 79058 to 79658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,270 DEBUG Processing 421/685 atomic regions from SNP 126000 to 126600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,301 DEBUG Processing 384/671 atomic regions from SNP 114939 to 115539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,312 DEBUG Processing 366/605 atomic regions from SNP 109620 to 110220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,325 DEBUG Processing 434/729 atomic regions from SNP 130170 to 130770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,368 DEBUG Processing 265/567 atomic regions from SNP 79358 to 79958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,526 DEBUG Processing 422/685 atomic regions from SNP 126300 to 126900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,543 DEBUG Processing 367/605 atomic regions from SNP 109920 to 110520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,549 DEBUG Processing 385/671 atomic regions from SNP 115239 to 115839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,595 DEBUG Processing 435/729 atomic regions from SNP 130470 to 131070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,597 DEBUG Processing 266/567 atomic regions from SNP 79658 to 80258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,780 DEBUG Processing 368/605 atomic regions from SNP 110220 to 110820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,782 DEBUG Processing 423/685 atomic regions from SNP 126600 to 127200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,805 DEBUG Processing 386/671 atomic regions from SNP 115539 to 116139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,830 DEBUG Processing 267/567 atomic regions from SNP 79958 to 80558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,865 DEBUG Processing 436/729 atomic regions from SNP 130770 to 131370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,002 DEBUG Processing 369/605 atomic regions from SNP 110520 to 111120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,019 DEBUG Processing 424/685 atomic regions from SNP 126900 to 127500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,043 DEBUG Processing 387/671 atomic regions from SNP 115839 to 116439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,049 DEBUG Processing 268/567 atomic regions from SNP 80258 to 80858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,136 DEBUG Processing 437/729 atomic regions from SNP 131070 to 131670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,220 DEBUG Processing 370/605 atomic regions from SNP 110820 to 111420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,249 DEBUG Processing 425/685 atomic regions from SNP 127200 to 127800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,267 DEBUG Processing 269/567 atomic regions from SNP 80558 to 81158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,281 DEBUG Processing 388/671 atomic regions from SNP 116139 to 116739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,417 DEBUG Processing 438/729 atomic regions from SNP 131370 to 131970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,434 DEBUG Processing 371/605 atomic regions from SNP 111120 to 111720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,480 DEBUG Processing 270/567 atomic regions from SNP 80858 to 81458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,484 DEBUG Processing 426/685 atomic regions from SNP 127500 to 128100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,519 DEBUG Processing 389/671 atomic regions from SNP 116439 to 117039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,650 DEBUG Processing 372/605 atomic regions from SNP 111420 to 112020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,688 DEBUG Processing 439/729 atomic regions from SNP 131670 to 132270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,696 DEBUG Processing 271/567 atomic regions from SNP 81158 to 81758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,720 DEBUG Processing 427/685 atomic regions from SNP 127800 to 128400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,750 DEBUG Processing 390/671 atomic regions from SNP 116739 to 117339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,858 DEBUG Processing 373/605 atomic regions from SNP 111720 to 112320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,904 DEBUG Processing 272/567 atomic regions from SNP 81458 to 82058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,947 DEBUG Processing 440/729 atomic regions from SNP 131970 to 132570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,949 DEBUG Processing 428/685 atomic regions from SNP 128100 to 128700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,975 DEBUG Processing 391/671 atomic regions from SNP 117039 to 117639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,065 DEBUG Processing 374/605 atomic regions from SNP 112020 to 112620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,110 DEBUG Processing 273/567 atomic regions from SNP 81758 to 82358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,185 DEBUG Processing 429/685 atomic regions from SNP 128400 to 129000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,214 DEBUG Processing 392/671 atomic regions from SNP 117339 to 117939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,218 DEBUG Processing 441/729 atomic regions from SNP 132270 to 132870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,277 DEBUG Processing 375/605 atomic regions from SNP 112320 to 112920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,312 DEBUG Processing 274/567 atomic regions from SNP 82058 to 82658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,413 DEBUG Processing 430/685 atomic regions from SNP 128700 to 129300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,460 DEBUG Processing 393/671 atomic regions from SNP 117639 to 118239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,475 DEBUG Processing 442/729 atomic regions from SNP 132570 to 133170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,500 DEBUG Processing 376/605 atomic regions from SNP 112620 to 113220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,521 DEBUG Processing 275/567 atomic regions from SNP 82358 to 82958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,636 DEBUG Processing 431/685 atomic regions from SNP 129000 to 129600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,698 DEBUG Processing 394/671 atomic regions from SNP 117939 to 118539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,734 DEBUG Processing 443/729 atomic regions from SNP 132870 to 133470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,741 DEBUG Processing 276/567 atomic regions from SNP 82658 to 83258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,752 DEBUG Processing 377/605 atomic regions from SNP 112920 to 113520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,862 DEBUG Processing 432/685 atomic regions from SNP 129300 to 129900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,946 DEBUG Processing 395/671 atomic regions from SNP 118239 to 118839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,967 DEBUG Processing 277/567 atomic regions from SNP 82958 to 83558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,001 DEBUG Processing 444/729 atomic regions from SNP 133170 to 133770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,003 DEBUG Processing 378/605 atomic regions from SNP 113220 to 113820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,079 DEBUG Processing 433/685 atomic regions from SNP 129600 to 130200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,194 DEBUG Processing 396/671 atomic regions from SNP 118539 to 119139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,199 DEBUG Processing 278/567 atomic regions from SNP 83258 to 83858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,265 DEBUG Processing 379/605 atomic regions from SNP 113520 to 114120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,279 DEBUG Processing 445/729 atomic regions from SNP 133470 to 134070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,312 DEBUG Processing 434/685 atomic regions from SNP 129900 to 130500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,412 DEBUG Processing 279/567 atomic regions from SNP 83558 to 84158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,421 DEBUG Processing 397/671 atomic regions from SNP 118839 to 119439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,505 DEBUG Processing 380/605 atomic regions from SNP 113820 to 114420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,536 DEBUG Processing 446/729 atomic regions from SNP 133770 to 134370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,542 DEBUG Processing 435/685 atomic regions from SNP 130200 to 130800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,626 DEBUG Processing 280/567 atomic regions from SNP 83858 to 84458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,648 DEBUG Processing 398/671 atomic regions from SNP 119139 to 119739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,723 DEBUG Processing 381/605 atomic regions from SNP 114120 to 114720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,788 DEBUG Processing 447/729 atomic regions from SNP 134070 to 134670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,790 DEBUG Processing 436/685 atomic regions from SNP 130500 to 131100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,840 DEBUG Processing 281/567 atomic regions from SNP 84158 to 84758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,875 DEBUG Processing 399/671 atomic regions from SNP 119439 to 120039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,941 DEBUG Processing 382/605 atomic regions from SNP 114420 to 115020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,026 DEBUG Processing 437/685 atomic regions from SNP 130800 to 131400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,038 DEBUG Processing 448/729 atomic regions from SNP 134370 to 134970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,073 DEBUG Processing 282/567 atomic regions from SNP 84458 to 85058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,104 DEBUG Processing 400/671 atomic regions from SNP 119739 to 120339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,155 DEBUG Processing 383/605 atomic regions from SNP 114720 to 115320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,268 DEBUG Processing 438/685 atomic regions from SNP 131100 to 131700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,290 DEBUG Processing 449/729 atomic regions from SNP 134670 to 135270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,313 DEBUG Processing 283/567 atomic regions from SNP 84758 to 85358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,345 DEBUG Processing 401/671 atomic regions from SNP 120039 to 120639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,377 DEBUG Processing 384/605 atomic regions from SNP 115020 to 115620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,510 DEBUG Processing 439/685 atomic regions from SNP 131400 to 132000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,535 DEBUG Processing 284/567 atomic regions from SNP 85058 to 85658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,536 DEBUG Processing 450/729 atomic regions from SNP 134970 to 135570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,582 DEBUG Processing 402/671 atomic regions from SNP 120339 to 120939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,595 DEBUG Processing 385/605 atomic regions from SNP 115320 to 115920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,743 DEBUG Processing 440/685 atomic regions from SNP 131700 to 132300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,751 DEBUG Processing 285/567 atomic regions from SNP 85358 to 85958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,802 DEBUG Processing 451/729 atomic regions from SNP 135270 to 135870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,815 DEBUG Processing 403/671 atomic regions from SNP 120639 to 121239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,820 DEBUG Processing 386/605 atomic regions from SNP 115620 to 116220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,962 DEBUG Processing 286/567 atomic regions from SNP 85658 to 86258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,971 DEBUG Processing 441/685 atomic regions from SNP 132000 to 132600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,043 DEBUG Processing 387/605 atomic regions from SNP 115920 to 116520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,047 DEBUG Processing 404/671 atomic regions from SNP 120939 to 121539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,055 DEBUG Processing 452/729 atomic regions from SNP 135570 to 136170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,177 DEBUG Processing 287/567 atomic regions from SNP 85958 to 86558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,210 DEBUG Processing 442/685 atomic regions from SNP 132300 to 132900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,271 DEBUG Processing 388/605 atomic regions from SNP 116220 to 116820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,290 DEBUG Processing 405/671 atomic regions from SNP 121239 to 121839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,332 DEBUG Processing 453/729 atomic regions from SNP 135870 to 136470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,387 DEBUG Processing 288/567 atomic regions from SNP 86258 to 86858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,437 DEBUG Processing 443/685 atomic regions from SNP 132600 to 133200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,487 DEBUG Processing 389/605 atomic regions from SNP 116520 to 117120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,528 DEBUG Processing 406/671 atomic regions from SNP 121539 to 122139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,601 DEBUG Processing 454/729 atomic regions from SNP 136170 to 136770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,603 DEBUG Processing 289/567 atomic regions from SNP 86558 to 87158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,666 DEBUG Processing 444/685 atomic regions from SNP 132900 to 133500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,694 DEBUG Processing 390/605 atomic regions from SNP 116820 to 117420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,770 DEBUG Processing 407/671 atomic regions from SNP 121839 to 122439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,830 DEBUG Processing 290/567 atomic regions from SNP 86858 to 87458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,873 DEBUG Processing 455/729 atomic regions from SNP 136470 to 137070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,908 DEBUG Processing 445/685 atomic regions from SNP 133200 to 133800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,916 DEBUG Processing 391/605 atomic regions from SNP 117120 to 117720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,002 DEBUG Processing 408/671 atomic regions from SNP 122139 to 122739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,052 DEBUG Processing 291/567 atomic regions from SNP 87158 to 87758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,146 DEBUG Processing 392/605 atomic regions from SNP 117420 to 118020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,154 DEBUG Processing 456/729 atomic regions from SNP 136770 to 137370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,157 DEBUG Processing 446/685 atomic regions from SNP 133500 to 134100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,251 DEBUG Processing 409/671 atomic regions from SNP 122439 to 123039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,280 DEBUG Processing 292/567 atomic regions from SNP 87458 to 88058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,377 DEBUG Processing 393/605 atomic regions from SNP 117720 to 118320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,408 DEBUG Processing 447/685 atomic regions from SNP 133800 to 134400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,429 DEBUG Processing 457/729 atomic regions from SNP 137070 to 137670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,497 DEBUG Processing 293/567 atomic regions from SNP 87758 to 88358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,497 DEBUG Processing 410/671 atomic regions from SNP 122739 to 123339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,602 DEBUG Processing 394/605 atomic regions from SNP 118020 to 118620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,649 DEBUG Processing 448/685 atomic regions from SNP 134100 to 134700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,690 DEBUG Processing 458/729 atomic regions from SNP 137370 to 137970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,709 DEBUG Processing 294/567 atomic regions from SNP 88058 to 88658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,744 DEBUG Processing 411/671 atomic regions from SNP 123039 to 123639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,828 DEBUG Processing 395/605 atomic regions from SNP 118320 to 118920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,891 DEBUG Processing 449/685 atomic regions from SNP 134400 to 135000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,944 DEBUG Processing 295/567 atomic regions from SNP 88358 to 88958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,945 DEBUG Processing 459/729 atomic regions from SNP 137670 to 138270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,962 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:55:42,964 DEBUG chr17: Signal quantile: 0.995. signal threshold: 16. Best RMSEA: 0.039 2025-01-31 09:55:43,020 DEBUG Processing 412/671 atomic regions from SNP 123339 to 123939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,062 DEBUG Processing 396/605 atomic regions from SNP 118620 to 119220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,129 DEBUG Processing 450/685 atomic regions from SNP 134700 to 135300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,153 DEBUG Processing 296/567 atomic regions from SNP 88658 to 89258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,198 DEBUG Processing 460/729 atomic regions from SNP 137970 to 138570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,275 DEBUG Processing 413/671 atomic regions from SNP 123639 to 124239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,293 DEBUG Processing 397/605 atomic regions from SNP 118920 to 119520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,363 DEBUG Processing 451/685 atomic regions from SNP 135000 to 135600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,366 DEBUG Processing 297/567 atomic regions from SNP 88958 to 89558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,456 DEBUG Processing 461/729 atomic regions from SNP 138270 to 138870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,515 DEBUG Processing 398/605 atomic regions from SNP 119220 to 119820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,525 DEBUG Processing 414/671 atomic regions from SNP 123939 to 124539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,578 DEBUG Processing 298/567 atomic regions from SNP 89258 to 89858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,611 DEBUG Processing 452/685 atomic regions from SNP 135300 to 135900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,704 DEBUG Processing 462/729 atomic regions from SNP 138570 to 139170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,734 DEBUG Processing 399/605 atomic regions from SNP 119520 to 120120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,768 DEBUG Processing 415/671 atomic regions from SNP 124239 to 124839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,789 DEBUG Processing 299/567 atomic regions from SNP 89558 to 90158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,837 DEBUG Processing 453/685 atomic regions from SNP 135600 to 136200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,948 DEBUG Processing 463/729 atomic regions from SNP 138870 to 139470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,956 DEBUG Processing 400/605 atomic regions from SNP 119820 to 120420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,001 DEBUG Processing 416/671 atomic regions from SNP 124539 to 125139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,008 DEBUG Processing 300/567 atomic regions from SNP 89858 to 90458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,065 DEBUG Processing 454/685 atomic regions from SNP 135900 to 136500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,180 DEBUG Processing 401/605 atomic regions from SNP 120120 to 120720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,200 DEBUG Processing 464/729 atomic regions from SNP 139170 to 139770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,234 DEBUG Processing 301/567 atomic regions from SNP 90158 to 90758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,239 DEBUG Processing 417/671 atomic regions from SNP 124839 to 125439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,300 DEBUG Processing 455/685 atomic regions from SNP 136200 to 136800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,403 DEBUG Processing 402/605 atomic regions from SNP 120420 to 121020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,458 DEBUG Processing 302/567 atomic regions from SNP 90458 to 91058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,465 DEBUG Processing 465/729 atomic regions from SNP 139470 to 140070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,470 DEBUG Processing 418/671 atomic regions from SNP 125139 to 125739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,546 DEBUG Processing 456/685 atomic regions from SNP 136500 to 137100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,638 DEBUG Processing 403/605 atomic regions from SNP 120720 to 121320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,688 DEBUG Processing 303/567 atomic regions from SNP 90758 to 91358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,707 DEBUG Processing 419/671 atomic regions from SNP 125439 to 126039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,732 DEBUG Processing 466/729 atomic regions from SNP 139770 to 140370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,785 DEBUG Processing 457/685 atomic regions from SNP 136800 to 137400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,819 DEBUG chr17 total SNP count: 162644 2025-01-31 09:55:44,819 DEBUG chr17 length: 94987271 2025-01-31 09:55:44,819 DEBUG ----------------------------------------- 2025-01-31 09:55:44,819 INFO Processing SNPs in chr17 2025-01-31 09:55:44,862 DEBUG Processing 404/605 atomic regions from SNP 121020 to 121620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,916 DEBUG Processing 304/567 atomic regions from SNP 91058 to 91658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,945 DEBUG Processing 420/671 atomic regions from SNP 125739 to 126339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,985 DEBUG Processing 467/729 atomic regions from SNP 140070 to 140670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,990 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 162644)] 2025-01-31 09:55:45,010 DEBUG Processing 458/685 atomic regions from SNP 137100 to 137700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,072 DEBUG Processing 405/605 atomic regions from SNP 121320 to 121920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,105 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:45,131 DEBUG Processing 305/567 atomic regions from SNP 91358 to 91958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,171 DEBUG Processing 421/671 atomic regions from SNP 126039 to 126639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,231 DEBUG Processing 459/685 atomic regions from SNP 137400 to 138000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,233 DEBUG Processing 468/729 atomic regions from SNP 140370 to 140970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,280 DEBUG Processing 406/605 atomic regions from SNP 121620 to 122220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,341 DEBUG Processing 306/567 atomic regions from SNP 91658 to 92258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,394 DEBUG Processing 422/671 atomic regions from SNP 126339 to 126939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,461 DEBUG Processing 460/685 atomic regions from SNP 137700 to 138300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,481 DEBUG Processing 469/729 atomic regions from SNP 140670 to 141270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,495 DEBUG Processing 407/605 atomic regions from SNP 121920 to 122520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,552 DEBUG Processing 307/567 atomic regions from SNP 91958 to 92558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,620 DEBUG Processing 423/671 atomic regions from SNP 126639 to 127239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,699 DEBUG Processing 461/685 atomic regions from SNP 138000 to 138600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,716 DEBUG Processing 408/605 atomic regions from SNP 122220 to 122820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,733 DEBUG Processing 470/729 atomic regions from SNP 140970 to 141570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,771 DEBUG Processing 308/567 atomic regions from SNP 92258 to 92858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,839 DEBUG Processing 424/671 atomic regions from SNP 126939 to 127539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,930 DEBUG Processing 409/605 atomic regions from SNP 122520 to 123120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,937 DEBUG Processing 462/685 atomic regions from SNP 138300 to 138900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,976 DEBUG Processing 471/729 atomic regions from SNP 141270 to 141870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,990 DEBUG Processing 309/567 atomic regions from SNP 92558 to 93158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,059 DEBUG Processing 425/671 atomic regions from SNP 127239 to 127839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,143 DEBUG Processing 410/605 atomic regions from SNP 122820 to 123420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,169 DEBUG Processing 463/685 atomic regions from SNP 138600 to 139200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,208 DEBUG Processing 310/567 atomic regions from SNP 92858 to 93458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,225 DEBUG Processing 472/729 atomic regions from SNP 141570 to 142170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,290 DEBUG Processing 426/671 atomic regions from SNP 127539 to 128139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,355 DEBUG Processing 411/605 atomic regions from SNP 123120 to 123720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,401 DEBUG Processing 464/685 atomic regions from SNP 138900 to 139500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,433 DEBUG Processing 311/567 atomic regions from SNP 93158 to 93758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,475 DEBUG Processing 473/729 atomic regions from SNP 141870 to 142470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,536 DEBUG Processing 427/671 atomic regions from SNP 127839 to 128439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,576 DEBUG Processing 412/605 atomic regions from SNP 123420 to 124020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,632 DEBUG Processing 465/685 atomic regions from SNP 139200 to 139800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,665 DEBUG Processing 312/567 atomic regions from SNP 93458 to 94058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,727 DEBUG Processing 474/729 atomic regions from SNP 142170 to 142770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,781 DEBUG Processing 428/671 atomic regions from SNP 128139 to 128739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,806 DEBUG Processing 413/605 atomic regions from SNP 123720 to 124320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,874 DEBUG Processing 466/685 atomic regions from SNP 139500 to 140100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,890 DEBUG Processing 313/567 atomic regions from SNP 93758 to 94358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,981 DEBUG Processing 475/729 atomic regions from SNP 142470 to 143070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,020 DEBUG Processing 429/671 atomic regions from SNP 128439 to 129039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,039 DEBUG Processing 414/605 atomic regions from SNP 124020 to 124620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,108 DEBUG Processing 314/567 atomic regions from SNP 94058 to 94658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,110 DEBUG Processing 467/685 atomic regions from SNP 139800 to 140400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,231 DEBUG Processing 476/729 atomic regions from SNP 142770 to 143370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,254 DEBUG Processing 430/671 atomic regions from SNP 128739 to 129339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,291 DEBUG Processing 415/605 atomic regions from SNP 124320 to 124920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,327 DEBUG Processing 315/567 atomic regions from SNP 94358 to 94958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,350 DEBUG Processing 468/685 atomic regions from SNP 140100 to 140700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,476 DEBUG Processing 477/729 atomic regions from SNP 143070 to 143670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,488 DEBUG Processing 431/671 atomic regions from SNP 129039 to 129639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,532 DEBUG Processing 416/605 atomic regions from SNP 124620 to 125220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,544 DEBUG Processing 316/567 atomic regions from SNP 94658 to 95258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,580 DEBUG Processing 469/685 atomic regions from SNP 140400 to 141000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,716 DEBUG Processing 478/729 atomic regions from SNP 143370 to 143970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,728 DEBUG Processing 432/671 atomic regions from SNP 129339 to 129939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,753 DEBUG Processing 417/605 atomic regions from SNP 124920 to 125520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,761 DEBUG Processing 317/567 atomic regions from SNP 94958 to 95558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,811 DEBUG Processing 470/685 atomic regions from SNP 140700 to 141300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,956 DEBUG Processing 479/729 atomic regions from SNP 143670 to 144270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,979 DEBUG Processing 433/671 atomic regions from SNP 129639 to 130239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,983 DEBUG Processing 318/567 atomic regions from SNP 95258 to 95858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,997 DEBUG Processing 418/605 atomic regions from SNP 125220 to 125820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,044 DEBUG Processing 471/685 atomic regions from SNP 141000 to 141600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,197 DEBUG Processing 319/567 atomic regions from SNP 95558 to 96158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,197 DEBUG Processing 480/729 atomic regions from SNP 143970 to 144570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,236 DEBUG Processing 434/671 atomic regions from SNP 129939 to 130539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,252 DEBUG Processing 419/605 atomic regions from SNP 125520 to 126120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,273 DEBUG Processing 472/685 atomic regions from SNP 141300 to 141900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,416 DEBUG Processing 320/567 atomic regions from SNP 95858 to 96458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,442 DEBUG Processing 481/729 atomic regions from SNP 144270 to 144870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,503 DEBUG Processing 420/605 atomic regions from SNP 125820 to 126420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,504 DEBUG Processing 435/671 atomic regions from SNP 130239 to 130839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,505 DEBUG Processing 473/685 atomic regions from SNP 141600 to 142200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,630 DEBUG Processing 321/567 atomic regions from SNP 96158 to 96758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,684 DEBUG Processing 482/729 atomic regions from SNP 144570 to 145170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,725 DEBUG Processing 421/605 atomic regions from SNP 126120 to 126720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,738 DEBUG Processing 474/685 atomic regions from SNP 141900 to 142500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,750 DEBUG Processing 436/671 atomic regions from SNP 130539 to 131139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,843 DEBUG Processing 322/567 atomic regions from SNP 96458 to 97058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,922 DEBUG Processing 483/729 atomic regions from SNP 144870 to 145470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,942 DEBUG Processing 422/605 atomic regions from SNP 126420 to 127020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,972 DEBUG Processing 475/685 atomic regions from SNP 142200 to 142800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,000 DEBUG Processing 437/671 atomic regions from SNP 130839 to 131439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,050 DEBUG Processing 323/567 atomic regions from SNP 96758 to 97358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,158 DEBUG Processing 423/605 atomic regions from SNP 126720 to 127320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,162 DEBUG Processing 484/729 atomic regions from SNP 145170 to 145770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,203 DEBUG Processing 476/685 atomic regions from SNP 142500 to 143100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,248 DEBUG Processing 438/671 atomic regions from SNP 131139 to 131739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,259 DEBUG Processing 324/567 atomic regions from SNP 97058 to 97658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,377 DEBUG Processing 424/605 atomic regions from SNP 127020 to 127620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,415 DEBUG Processing 485/729 atomic regions from SNP 145470 to 146070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,437 DEBUG Processing 477/685 atomic regions from SNP 142800 to 143400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,478 DEBUG Processing 325/567 atomic regions from SNP 97358 to 97958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,496 DEBUG Processing 439/671 atomic regions from SNP 131439 to 132039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,624 DEBUG Processing 425/605 atomic regions from SNP 127320 to 127920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,664 DEBUG Processing 486/729 atomic regions from SNP 145770 to 146370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,672 DEBUG Processing 478/685 atomic regions from SNP 143100 to 143700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,699 DEBUG Processing 326/567 atomic regions from SNP 97658 to 98258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,743 DEBUG Processing 440/671 atomic regions from SNP 131739 to 132339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,866 DEBUG Processing 426/605 atomic regions from SNP 127620 to 128220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,907 DEBUG Processing 479/685 atomic regions from SNP 143400 to 144000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,912 DEBUG Processing 487/729 atomic regions from SNP 146070 to 146670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,919 DEBUG Processing 327/567 atomic regions from SNP 97958 to 98558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,986 DEBUG Processing 441/671 atomic regions from SNP 132039 to 132639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,084 DEBUG Processing 427/605 atomic regions from SNP 127920 to 128520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,139 DEBUG Processing 328/567 atomic regions from SNP 98258 to 98858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,146 DEBUG Processing 480/685 atomic regions from SNP 143700 to 144300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,185 DEBUG Processing 488/729 atomic regions from SNP 146370 to 146970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,233 DEBUG Processing 442/671 atomic regions from SNP 132339 to 132939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,318 DEBUG Processing 428/605 atomic regions from SNP 128220 to 128820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,365 DEBUG Processing 329/567 atomic regions from SNP 98558 to 99158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,394 DEBUG Processing 481/685 atomic regions from SNP 144000 to 144600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,458 DEBUG Processing 489/729 atomic regions from SNP 146670 to 147270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,475 DEBUG Processing 443/671 atomic regions from SNP 132639 to 133239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,542 DEBUG Processing 429/605 atomic regions from SNP 128520 to 129120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,585 DEBUG Processing 330/567 atomic regions from SNP 98858 to 99458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,639 DEBUG Processing 482/685 atomic regions from SNP 144300 to 144900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,716 DEBUG Processing 490/729 atomic regions from SNP 146970 to 147570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,730 DEBUG Processing 444/671 atomic regions from SNP 132939 to 133539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,782 DEBUG Processing 430/605 atomic regions from SNP 128820 to 129420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,818 DEBUG Processing 331/567 atomic regions from SNP 99158 to 99758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,889 DEBUG Processing 483/685 atomic regions from SNP 144600 to 145200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,970 DEBUG Processing 445/671 atomic regions from SNP 133239 to 133839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,980 DEBUG Processing 491/729 atomic regions from SNP 147270 to 147870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,039 DEBUG Processing 431/605 atomic regions from SNP 129120 to 129720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,040 DEBUG Processing 332/567 atomic regions from SNP 99458 to 100058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,131 DEBUG Processing 484/685 atomic regions from SNP 144900 to 145500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,203 DEBUG Processing 446/671 atomic regions from SNP 133539 to 134139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,230 DEBUG Processing 492/729 atomic regions from SNP 147570 to 148170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,270 DEBUG Processing 333/567 atomic regions from SNP 99758 to 100358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,294 DEBUG Processing 432/605 atomic regions from SNP 129420 to 130020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,366 DEBUG Processing 485/685 atomic regions from SNP 145200 to 145800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,435 DEBUG Processing 447/671 atomic regions from SNP 133839 to 134439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,477 DEBUG Processing 493/729 atomic regions from SNP 147870 to 148470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,485 DEBUG Processing 334/567 atomic regions from SNP 100058 to 100658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,545 DEBUG Processing 433/605 atomic regions from SNP 129720 to 130320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,604 DEBUG Processing 486/685 atomic regions from SNP 145500 to 146100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,672 DEBUG Processing 448/671 atomic regions from SNP 134139 to 134739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,711 DEBUG Processing 335/567 atomic regions from SNP 100358 to 100958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,730 DEBUG Processing 494/729 atomic regions from SNP 148170 to 148770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,804 DEBUG Processing 434/605 atomic regions from SNP 130020 to 130620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,846 DEBUG Processing 487/685 atomic regions from SNP 145800 to 146400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,913 DEBUG Processing 449/671 atomic regions from SNP 134439 to 135039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,934 DEBUG Processing 336/567 atomic regions from SNP 100658 to 101258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,984 DEBUG Processing 495/729 atomic regions from SNP 148470 to 149070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,058 DEBUG Processing 435/605 atomic regions from SNP 130320 to 130920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,085 DEBUG Processing 488/685 atomic regions from SNP 146100 to 146700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,160 DEBUG Processing 450/671 atomic regions from SNP 134739 to 135339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,173 DEBUG Processing 337/567 atomic regions from SNP 100958 to 101558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,254 DEBUG Processing 496/729 atomic regions from SNP 148770 to 149370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,312 DEBUG Processing 436/605 atomic regions from SNP 130620 to 131220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,319 DEBUG Processing 489/685 atomic regions from SNP 146400 to 147000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,392 DEBUG Processing 338/567 atomic regions from SNP 101258 to 101858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,397 DEBUG Processing 451/671 atomic regions from SNP 135039 to 135639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,520 DEBUG Processing 497/729 atomic regions from SNP 149070 to 149670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,552 DEBUG Processing 490/685 atomic regions from SNP 146700 to 147300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,562 DEBUG Processing 437/605 atomic regions from SNP 130920 to 131520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,606 DEBUG Processing 339/567 atomic regions from SNP 101558 to 102158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,649 DEBUG Processing 452/671 atomic regions from SNP 135339 to 135939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,776 DEBUG Processing 498/729 atomic regions from SNP 149370 to 149970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,789 DEBUG Processing 491/685 atomic regions from SNP 147000 to 147600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,817 DEBUG Processing 438/605 atomic regions from SNP 131220 to 131820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,822 DEBUG Processing 340/567 atomic regions from SNP 101858 to 102458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,906 DEBUG Processing 453/671 atomic regions from SNP 135639 to 136239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,024 DEBUG Processing 499/729 atomic regions from SNP 149670 to 150270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,029 DEBUG Processing 492/685 atomic regions from SNP 147300 to 147900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,040 DEBUG Processing 341/567 atomic regions from SNP 102158 to 102758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,069 DEBUG Processing 439/605 atomic regions from SNP 131520 to 132120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,163 DEBUG Processing 454/671 atomic regions from SNP 135939 to 136539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,258 DEBUG Processing 342/567 atomic regions from SNP 102458 to 103058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,267 DEBUG Processing 493/685 atomic regions from SNP 147600 to 148200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,278 DEBUG Processing 500/729 atomic regions from SNP 149970 to 150570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,312 DEBUG Processing 440/605 atomic regions from SNP 131820 to 132420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,415 DEBUG Processing 455/671 atomic regions from SNP 136239 to 136839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,471 DEBUG Processing 343/567 atomic regions from SNP 102758 to 103358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,503 DEBUG Processing 494/685 atomic regions from SNP 147900 to 148500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,520 DEBUG Processing 501/729 atomic regions from SNP 150270 to 150870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,557 DEBUG Processing 441/605 atomic regions from SNP 132120 to 132720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,655 DEBUG Processing 456/671 atomic regions from SNP 136539 to 137139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,685 DEBUG Processing 344/567 atomic regions from SNP 103058 to 103658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,741 DEBUG Processing 495/685 atomic regions from SNP 148200 to 148800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,760 DEBUG Processing 502/729 atomic regions from SNP 150570 to 151170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,795 DEBUG Processing 442/605 atomic regions from SNP 132420 to 133020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,891 DEBUG Processing 457/671 atomic regions from SNP 136839 to 137439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,902 DEBUG Processing 345/567 atomic regions from SNP 103358 to 103958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,987 DEBUG Processing 496/685 atomic regions from SNP 148500 to 149100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,025 DEBUG Processing 503/729 atomic regions from SNP 150870 to 151470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,038 DEBUG Processing 443/605 atomic regions from SNP 132720 to 133320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,121 DEBUG Processing 346/567 atomic regions from SNP 103658 to 104258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,136 DEBUG Processing 458/671 atomic regions from SNP 137139 to 137739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,224 DEBUG Processing 497/685 atomic regions from SNP 148800 to 149400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,280 DEBUG Processing 504/729 atomic regions from SNP 151170 to 151770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,286 DEBUG Processing 444/605 atomic regions from SNP 133020 to 133620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,333 DEBUG Processing 347/567 atomic regions from SNP 103958 to 104558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,389 DEBUG Processing 459/671 atomic regions from SNP 137439 to 138039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,462 DEBUG Processing 498/685 atomic regions from SNP 149100 to 149700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,527 DEBUG Processing 505/729 atomic regions from SNP 151470 to 152070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,541 DEBUG Processing 445/605 atomic regions from SNP 133320 to 133920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,550 DEBUG Processing 348/567 atomic regions from SNP 104258 to 104858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,637 DEBUG Processing 460/671 atomic regions from SNP 137739 to 138339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,693 DEBUG Processing 499/685 atomic regions from SNP 149400 to 150000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,762 DEBUG Processing 349/567 atomic regions from SNP 104558 to 105158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,766 DEBUG Processing 506/729 atomic regions from SNP 151770 to 152370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,787 DEBUG Processing 446/605 atomic regions from SNP 133620 to 134220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,868 DEBUG Processing 461/671 atomic regions from SNP 138039 to 138639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,918 DEBUG Processing 500/685 atomic regions from SNP 149700 to 150300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,981 DEBUG Processing 350/567 atomic regions from SNP 104858 to 105458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,008 DEBUG Processing 507/729 atomic regions from SNP 152070 to 152670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,038 DEBUG Processing 447/605 atomic regions from SNP 133920 to 134520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,115 DEBUG Processing 462/671 atomic regions from SNP 138339 to 138939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,151 DEBUG Processing 501/685 atomic regions from SNP 150000 to 150600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,205 DEBUG Processing 351/567 atomic regions from SNP 105158 to 105758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,257 DEBUG Processing 508/729 atomic regions from SNP 152370 to 152970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,292 DEBUG Processing 448/605 atomic regions from SNP 134220 to 134820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,365 DEBUG Processing 463/671 atomic regions from SNP 138639 to 139239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,378 DEBUG Processing 502/685 atomic regions from SNP 150300 to 150900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,420 DEBUG Processing 352/567 atomic regions from SNP 105458 to 106058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,494 DEBUG Processing 509/729 atomic regions from SNP 152670 to 153270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,535 DEBUG Processing 449/605 atomic regions from SNP 134520 to 135120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,605 DEBUG Processing 503/685 atomic regions from SNP 150600 to 151200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,608 DEBUG Processing 464/671 atomic regions from SNP 138939 to 139539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,638 DEBUG Processing 353/567 atomic regions from SNP 105758 to 106358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,762 DEBUG Processing 510/729 atomic regions from SNP 152970 to 153570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,786 DEBUG Processing 450/605 atomic regions from SNP 134820 to 135420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,841 DEBUG Processing 504/685 atomic regions from SNP 150900 to 151500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,857 DEBUG Processing 354/567 atomic regions from SNP 106058 to 106658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,862 DEBUG Processing 465/671 atomic regions from SNP 139239 to 139839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,021 DEBUG Processing 511/729 atomic regions from SNP 153270 to 153870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,037 DEBUG Processing 451/605 atomic regions from SNP 135120 to 135720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,066 DEBUG Processing 355/567 atomic regions from SNP 106358 to 106958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,068 DEBUG Processing 505/685 atomic regions from SNP 151200 to 151800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,105 DEBUG Processing 466/671 atomic regions from SNP 139539 to 140139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,262 DEBUG Processing 512/729 atomic regions from SNP 153570 to 154170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,276 DEBUG Processing 356/567 atomic regions from SNP 106658 to 107258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,292 DEBUG Processing 452/605 atomic regions from SNP 135420 to 136020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,296 DEBUG Processing 506/685 atomic regions from SNP 151500 to 152100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,347 DEBUG Processing 467/671 atomic regions from SNP 139839 to 140439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,485 DEBUG Processing 357/567 atomic regions from SNP 106958 to 107558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,515 DEBUG Processing 513/729 atomic regions from SNP 153870 to 154470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,521 DEBUG Processing 507/685 atomic regions from SNP 151800 to 152400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,541 DEBUG Processing 453/605 atomic regions from SNP 135720 to 136320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,587 DEBUG Processing 468/671 atomic regions from SNP 140139 to 140739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,687 DEBUG Processing 358/567 atomic regions from SNP 107258 to 107858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,742 DEBUG Processing 508/685 atomic regions from SNP 152100 to 152700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,772 DEBUG Processing 514/729 atomic regions from SNP 154170 to 154770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,787 DEBUG Processing 454/605 atomic regions from SNP 136020 to 136620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,825 DEBUG Processing 469/671 atomic regions from SNP 140439 to 141039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,894 DEBUG Processing 359/567 atomic regions from SNP 107558 to 108158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,962 DEBUG Processing 509/685 atomic regions from SNP 152400 to 153000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,027 DEBUG Processing 455/605 atomic regions from SNP 136320 to 136920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,032 DEBUG Processing 515/729 atomic regions from SNP 154470 to 155070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,059 DEBUG Processing 470/671 atomic regions from SNP 140739 to 141339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,102 DEBUG Processing 360/567 atomic regions from SNP 107858 to 108458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,183 DEBUG Processing 510/685 atomic regions from SNP 152700 to 153300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,273 DEBUG Processing 456/605 atomic regions from SNP 136620 to 137220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,291 DEBUG Processing 516/729 atomic regions from SNP 154770 to 155370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,311 DEBUG Processing 471/671 atomic regions from SNP 141039 to 141639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,323 DEBUG Processing 361/567 atomic regions from SNP 108158 to 108758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,422 DEBUG Processing 511/685 atomic regions from SNP 153000 to 153600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,531 DEBUG Processing 457/605 atomic regions from SNP 136920 to 137520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,540 DEBUG Processing 362/567 atomic regions from SNP 108458 to 109058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,551 DEBUG Processing 517/729 atomic regions from SNP 155070 to 155670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,565 DEBUG Processing 472/671 atomic regions from SNP 141339 to 141939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,674 DEBUG Processing 512/685 atomic regions from SNP 153300 to 153900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,757 DEBUG Processing 363/567 atomic regions from SNP 108758 to 109358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,783 DEBUG Processing 458/605 atomic regions from SNP 137220 to 137820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,813 DEBUG Processing 518/729 atomic regions from SNP 155370 to 155970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,817 DEBUG Processing 473/671 atomic regions from SNP 141639 to 142239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,912 DEBUG Processing 513/685 atomic regions from SNP 153600 to 154200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,971 DEBUG Processing 364/567 atomic regions from SNP 109058 to 109658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,043 DEBUG Processing 459/605 atomic regions from SNP 137520 to 138120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,064 DEBUG Processing 474/671 atomic regions from SNP 141939 to 142539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,072 DEBUG Processing 519/729 atomic regions from SNP 155670 to 156270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,148 DEBUG Processing 514/685 atomic regions from SNP 153900 to 154500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,176 DEBUG Processing 365/567 atomic regions from SNP 109358 to 109958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,291 DEBUG Processing 460/605 atomic regions from SNP 137820 to 138420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,308 DEBUG Processing 475/671 atomic regions from SNP 142239 to 142839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,317 DEBUG Processing 520/729 atomic regions from SNP 155970 to 156570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,376 DEBUG Processing 515/685 atomic regions from SNP 154200 to 154800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,381 DEBUG Processing 366/567 atomic regions from SNP 109658 to 110258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,536 DEBUG Processing 461/605 atomic regions from SNP 138120 to 138720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,568 DEBUG Processing 476/671 atomic regions from SNP 142539 to 143139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,568 DEBUG Processing 521/729 atomic regions from SNP 156270 to 156870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,596 DEBUG Processing 367/567 atomic regions from SNP 109958 to 110558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,612 DEBUG Processing 516/685 atomic regions from SNP 154500 to 155100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,783 DEBUG Processing 462/605 atomic regions from SNP 138420 to 139020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,814 DEBUG Processing 368/567 atomic regions from SNP 110258 to 110858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,825 DEBUG Processing 522/729 atomic regions from SNP 156570 to 157170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,826 DEBUG Processing 477/671 atomic regions from SNP 142839 to 143439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,847 DEBUG Processing 517/685 atomic regions from SNP 154800 to 155400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,031 DEBUG Processing 463/605 atomic regions from SNP 138720 to 139320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,041 DEBUG Processing 369/567 atomic regions from SNP 110558 to 111158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,088 DEBUG Processing 523/729 atomic regions from SNP 156870 to 157470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,091 DEBUG Processing 478/671 atomic regions from SNP 143139 to 143739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,093 DEBUG Processing 518/685 atomic regions from SNP 155100 to 155700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,260 DEBUG Processing 370/567 atomic regions from SNP 110858 to 111458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,272 DEBUG Processing 464/605 atomic regions from SNP 139020 to 139620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,335 DEBUG Processing 479/671 atomic regions from SNP 143439 to 144039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,340 DEBUG Processing 519/685 atomic regions from SNP 155400 to 156000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,345 DEBUG Processing 524/729 atomic regions from SNP 157170 to 157770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,480 DEBUG Processing 371/567 atomic regions from SNP 111158 to 111758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,516 DEBUG Processing 465/605 atomic regions from SNP 139320 to 139920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,568 DEBUG Processing 480/671 atomic regions from SNP 143739 to 144339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,587 DEBUG Processing 525/729 atomic regions from SNP 157470 to 158070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,591 DEBUG Processing 520/685 atomic regions from SNP 155700 to 156300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,694 DEBUG Processing 372/567 atomic regions from SNP 111458 to 112058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,762 DEBUG Processing 466/605 atomic regions from SNP 139620 to 140220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,806 DEBUG Processing 481/671 atomic regions from SNP 144039 to 144639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,839 DEBUG Processing 526/729 atomic regions from SNP 157770 to 158370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,858 DEBUG Processing 521/685 atomic regions from SNP 156000 to 156600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,910 DEBUG Processing 373/567 atomic regions from SNP 111758 to 112358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,009 DEBUG Processing 467/605 atomic regions from SNP 139920 to 140520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,039 DEBUG Processing 482/671 atomic regions from SNP 144339 to 144939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,082 DEBUG Processing 527/729 atomic regions from SNP 158070 to 158670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,111 DEBUG Processing 522/685 atomic regions from SNP 156300 to 156900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,120 DEBUG Processing 374/567 atomic regions from SNP 112058 to 112658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,255 DEBUG Processing 468/605 atomic regions from SNP 140220 to 140820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,268 DEBUG Processing 483/671 atomic regions from SNP 144639 to 145239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,328 DEBUG Processing 528/729 atomic regions from SNP 158370 to 158970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,338 DEBUG Processing 375/567 atomic regions from SNP 112358 to 112958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,357 DEBUG Processing 523/685 atomic regions from SNP 156600 to 157200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,509 DEBUG Processing 484/671 atomic regions from SNP 144939 to 145539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,532 DEBUG Processing 469/605 atomic regions from SNP 140520 to 141120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,567 DEBUG Processing 376/567 atomic regions from SNP 112658 to 113258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,589 DEBUG Processing 529/729 atomic regions from SNP 158670 to 159270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,613 DEBUG Processing 524/685 atomic regions from SNP 156900 to 157500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,736 DEBUG Processing 485/671 atomic regions from SNP 145239 to 145839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,784 DEBUG Processing 377/567 atomic regions from SNP 112958 to 113558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,787 DEBUG Processing 470/605 atomic regions from SNP 140820 to 141420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,832 DEBUG Processing 530/729 atomic regions from SNP 158970 to 159570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,866 DEBUG Processing 525/685 atomic regions from SNP 157200 to 157800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,960 DEBUG Processing 486/671 atomic regions from SNP 145539 to 146139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,001 DEBUG Processing 378/567 atomic regions from SNP 113258 to 113858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,040 DEBUG Processing 471/605 atomic regions from SNP 141120 to 141720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,084 DEBUG Processing 531/729 atomic regions from SNP 159270 to 159870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,124 DEBUG Processing 526/685 atomic regions from SNP 157500 to 158100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,188 DEBUG Processing 487/671 atomic regions from SNP 145839 to 146439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,215 DEBUG Processing 379/567 atomic regions from SNP 113558 to 114158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,298 DEBUG Processing 472/605 atomic regions from SNP 141420 to 142020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,345 DEBUG Processing 532/729 atomic regions from SNP 159570 to 160170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,371 DEBUG Processing 527/685 atomic regions from SNP 157800 to 158400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,417 DEBUG Processing 488/671 atomic regions from SNP 146139 to 146739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,425 DEBUG Processing 380/567 atomic regions from SNP 113858 to 114458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,547 DEBUG Processing 473/605 atomic regions from SNP 141720 to 142320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,588 DEBUG Processing 533/729 atomic regions from SNP 159870 to 160470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,603 DEBUG Processing 528/685 atomic regions from SNP 158100 to 158700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,636 DEBUG Processing 381/567 atomic regions from SNP 114158 to 114758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,644 DEBUG Processing 489/671 atomic regions from SNP 146439 to 147039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,772 DEBUG Processing 474/605 atomic regions from SNP 142020 to 142620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,833 DEBUG Processing 534/729 atomic regions from SNP 160170 to 160770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,837 DEBUG Processing 529/685 atomic regions from SNP 158400 to 159000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,851 DEBUG Processing 382/567 atomic regions from SNP 114458 to 115058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,871 DEBUG Processing 490/671 atomic regions from SNP 146739 to 147339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,002 DEBUG Processing 475/605 atomic regions from SNP 142320 to 142920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,071 DEBUG Processing 383/567 atomic regions from SNP 114758 to 115358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,081 DEBUG Processing 530/685 atomic regions from SNP 158700 to 159300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,082 DEBUG Processing 535/729 atomic regions from SNP 160470 to 161070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,104 DEBUG Processing 491/671 atomic regions from SNP 147039 to 147639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,239 DEBUG Processing 476/605 atomic regions from SNP 142620 to 143220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,292 DEBUG Processing 384/567 atomic regions from SNP 115058 to 115658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,323 DEBUG Processing 531/685 atomic regions from SNP 159000 to 159600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,329 DEBUG Processing 536/729 atomic regions from SNP 160770 to 161370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,335 DEBUG Processing 492/671 atomic regions from SNP 147339 to 147939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,485 DEBUG Processing 477/605 atomic regions from SNP 142920 to 143520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,508 DEBUG Processing 385/567 atomic regions from SNP 115358 to 115958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,563 DEBUG Processing 532/685 atomic regions from SNP 159300 to 159900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,565 DEBUG Processing 493/671 atomic regions from SNP 147639 to 148239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,573 DEBUG Processing 537/729 atomic regions from SNP 161070 to 161670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,721 DEBUG Processing 386/567 atomic regions from SNP 115658 to 116258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,729 DEBUG Processing 478/605 atomic regions from SNP 143220 to 143820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,794 DEBUG Processing 494/671 atomic regions from SNP 147939 to 148539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,801 DEBUG Processing 533/685 atomic regions from SNP 159600 to 160200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,816 DEBUG Processing 538/729 atomic regions from SNP 161370 to 161970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,938 DEBUG Processing 387/567 atomic regions from SNP 115958 to 116558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,984 DEBUG Processing 479/605 atomic regions from SNP 143520 to 144120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,025 DEBUG Processing 495/671 atomic regions from SNP 148239 to 148839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,038 DEBUG Processing 534/685 atomic regions from SNP 159900 to 160500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,063 DEBUG Processing 539/729 atomic regions from SNP 161670 to 162270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,161 DEBUG Processing 388/567 atomic regions from SNP 116258 to 116858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,241 DEBUG Processing 480/605 atomic regions from SNP 143820 to 144420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,252 DEBUG Processing 496/671 atomic regions from SNP 148539 to 149139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,278 DEBUG Processing 535/685 atomic regions from SNP 160200 to 160800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,312 DEBUG Processing 540/729 atomic regions from SNP 161970 to 162570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,369 DEBUG Processing 389/567 atomic regions from SNP 116558 to 117158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,476 DEBUG Processing 497/671 atomic regions from SNP 148839 to 149439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,489 DEBUG Processing 481/605 atomic regions from SNP 144120 to 144720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,518 DEBUG Processing 536/685 atomic regions from SNP 160500 to 161100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,551 DEBUG Processing 541/729 atomic regions from SNP 162270 to 162870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,582 DEBUG Processing 390/567 atomic regions from SNP 116858 to 117458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,699 DEBUG Processing 498/671 atomic regions from SNP 149139 to 149739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,726 DEBUG Processing 482/605 atomic regions from SNP 144420 to 145020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,761 DEBUG Processing 537/685 atomic regions from SNP 160800 to 161400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,793 DEBUG Processing 542/729 atomic regions from SNP 162570 to 163170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,795 DEBUG Processing 391/567 atomic regions from SNP 117158 to 117758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,923 DEBUG Processing 499/671 atomic regions from SNP 149439 to 150039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,963 DEBUG Processing 483/605 atomic regions from SNP 144720 to 145320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,006 DEBUG Processing 538/685 atomic regions from SNP 161100 to 161700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,017 DEBUG Processing 392/567 atomic regions from SNP 117458 to 118058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,045 DEBUG Processing 543/729 atomic regions from SNP 162870 to 163470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,150 DEBUG Processing 500/671 atomic regions from SNP 149739 to 150339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,216 DEBUG Processing 484/605 atomic regions from SNP 145020 to 145620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,242 DEBUG Processing 393/567 atomic regions from SNP 117758 to 118358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,269 DEBUG Processing 539/685 atomic regions from SNP 161400 to 162000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,299 DEBUG Processing 544/729 atomic regions from SNP 163170 to 163770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,372 DEBUG Processing 501/671 atomic regions from SNP 150039 to 150639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,452 DEBUG Processing 394/567 atomic regions from SNP 118058 to 118658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,459 DEBUG Processing 485/605 atomic regions from SNP 145320 to 145920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,516 DEBUG Processing 540/685 atomic regions from SNP 161700 to 162300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,545 DEBUG Processing 545/729 atomic regions from SNP 163470 to 164070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,596 DEBUG Processing 502/671 atomic regions from SNP 150339 to 150939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,661 DEBUG Processing 395/567 atomic regions from SNP 118358 to 118958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,704 DEBUG Processing 486/605 atomic regions from SNP 145620 to 146220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,766 DEBUG Processing 541/685 atomic regions from SNP 162000 to 162600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,798 DEBUG Processing 546/729 atomic regions from SNP 163770 to 164370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,826 DEBUG Processing 503/671 atomic regions from SNP 150639 to 151239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,867 DEBUG Processing 396/567 atomic regions from SNP 118658 to 119258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,953 DEBUG Processing 487/605 atomic regions from SNP 145920 to 146520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,006 DEBUG Processing 542/685 atomic regions from SNP 162300 to 162900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,059 DEBUG Processing 547/729 atomic regions from SNP 164070 to 164670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,062 DEBUG Processing 504/671 atomic regions from SNP 150939 to 151539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,076 DEBUG Processing 397/567 atomic regions from SNP 118958 to 119558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,189 DEBUG Processing 488/605 atomic regions from SNP 146220 to 146820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,242 DEBUG Processing 543/685 atomic regions from SNP 162600 to 163200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,295 DEBUG Processing 398/567 atomic regions from SNP 119258 to 119858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,298 DEBUG Processing 505/671 atomic regions from SNP 151239 to 151839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,310 DEBUG Processing 548/729 atomic regions from SNP 164370 to 164970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,427 DEBUG Processing 489/605 atomic regions from SNP 146520 to 147120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,485 DEBUG Processing 544/685 atomic regions from SNP 162900 to 163500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,521 DEBUG Processing 399/567 atomic regions from SNP 119558 to 120158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,544 DEBUG Processing 506/671 atomic regions from SNP 151539 to 152139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,560 DEBUG Processing 549/729 atomic regions from SNP 164670 to 165270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,567 DEBUG Segmenting atomic regions: 2025-01-31 09:56:05,644 DEBUG Processing 1/541 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,651 DEBUG Processing 490/605 atomic regions from SNP 146820 to 147420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,716 DEBUG Processing 545/685 atomic regions from SNP 163200 to 163800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,744 DEBUG Processing 400/567 atomic regions from SNP 119858 to 120458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,773 DEBUG Processing 507/671 atomic regions from SNP 151839 to 152439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,800 DEBUG Processing 550/729 atomic regions from SNP 164970 to 165570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,857 DEBUG Processing 2/541 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,886 DEBUG Processing 491/605 atomic regions from SNP 147120 to 147720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,952 DEBUG Processing 546/685 atomic regions from SNP 163500 to 164100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,956 DEBUG Processing 401/567 atomic regions from SNP 120158 to 120758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,998 DEBUG Processing 508/671 atomic regions from SNP 152139 to 152739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,040 DEBUG Processing 551/729 atomic regions from SNP 165270 to 165870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,072 DEBUG Processing 3/541 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,116 DEBUG Processing 492/605 atomic regions from SNP 147420 to 148020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,168 DEBUG Processing 402/567 atomic regions from SNP 120458 to 121058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,195 DEBUG Processing 547/685 atomic regions from SNP 163800 to 164400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,224 DEBUG Processing 509/671 atomic regions from SNP 152439 to 153039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,282 DEBUG Processing 552/729 atomic regions from SNP 165570 to 166170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,287 DEBUG Processing 4/541 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,359 DEBUG Processing 493/605 atomic regions from SNP 147720 to 148320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,377 DEBUG Processing 403/567 atomic regions from SNP 120758 to 121358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,443 DEBUG Processing 548/685 atomic regions from SNP 164100 to 164700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,445 DEBUG Processing 510/671 atomic regions from SNP 152739 to 153339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,501 DEBUG Processing 5/541 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,522 DEBUG Processing 553/729 atomic regions from SNP 165870 to 166470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,592 DEBUG Processing 404/567 atomic regions from SNP 121058 to 121658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,603 DEBUG Processing 494/605 atomic regions from SNP 148020 to 148620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,667 DEBUG Processing 511/671 atomic regions from SNP 153039 to 153639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,695 DEBUG Processing 549/685 atomic regions from SNP 164400 to 165000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,713 DEBUG Processing 6/541 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,759 DEBUG Processing 554/729 atomic regions from SNP 166170 to 166770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,808 DEBUG Processing 405/567 atomic regions from SNP 121358 to 121958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,844 DEBUG Processing 495/605 atomic regions from SNP 148320 to 148920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,888 DEBUG Processing 512/671 atomic regions from SNP 153339 to 153939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,923 DEBUG Processing 7/541 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,945 DEBUG Processing 550/685 atomic regions from SNP 164700 to 165300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,012 DEBUG Processing 555/729 atomic regions from SNP 166470 to 167070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,019 DEBUG Processing 406/567 atomic regions from SNP 121658 to 122258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,084 DEBUG Processing 496/605 atomic regions from SNP 148620 to 149220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,106 DEBUG Processing 513/671 atomic regions from SNP 153639 to 154239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,127 DEBUG Processing 8/541 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,189 DEBUG Processing 551/685 atomic regions from SNP 165000 to 165600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,229 DEBUG Processing 407/567 atomic regions from SNP 121958 to 122558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,271 DEBUG Processing 556/729 atomic regions from SNP 166770 to 167370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,318 DEBUG Processing 497/605 atomic regions from SNP 148920 to 149520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,324 DEBUG Processing 514/671 atomic regions from SNP 153939 to 154539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,332 DEBUG Processing 9/541 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,427 DEBUG Processing 552/685 atomic regions from SNP 165300 to 165900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,433 DEBUG Processing 408/567 atomic regions from SNP 122258 to 122858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,535 DEBUG Processing 557/729 atomic regions from SNP 167070 to 167670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,547 DEBUG Processing 10/541 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,556 DEBUG Processing 498/605 atomic regions from SNP 149220 to 149820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,565 DEBUG Processing 515/671 atomic regions from SNP 154239 to 154839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,636 DEBUG Processing 409/567 atomic regions from SNP 122558 to 123158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,687 DEBUG Processing 553/685 atomic regions from SNP 165600 to 166200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,768 DEBUG Processing 11/541 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,789 DEBUG Processing 499/605 atomic regions from SNP 149520 to 150120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,794 DEBUG Processing 558/729 atomic regions from SNP 167370 to 167970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,796 DEBUG Processing 516/671 atomic regions from SNP 154539 to 155139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,845 DEBUG Processing 410/567 atomic regions from SNP 122858 to 123458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,928 DEBUG Processing 554/685 atomic regions from SNP 165900 to 166500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,983 DEBUG Processing 12/541 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,006 DEBUG Processing 500/605 atomic regions from SNP 149820 to 150420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,025 DEBUG Processing 517/671 atomic regions from SNP 154839 to 155439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,050 DEBUG Processing 559/729 atomic regions from SNP 167670 to 168270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,056 DEBUG Processing 411/567 atomic regions from SNP 123158 to 123758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,181 DEBUG Processing 555/685 atomic regions from SNP 166200 to 166800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,207 DEBUG Processing 13/541 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,227 DEBUG Processing 501/605 atomic regions from SNP 150120 to 150720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,257 DEBUG Processing 518/671 atomic regions from SNP 155139 to 155739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,277 DEBUG Processing 412/567 atomic regions from SNP 123458 to 124058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,316 DEBUG Processing 560/729 atomic regions from SNP 167970 to 168570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,421 DEBUG Processing 14/541 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,430 DEBUG Processing 556/685 atomic regions from SNP 166500 to 167100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,434 DEBUG Processing 502/605 atomic regions from SNP 150420 to 151020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,479 DEBUG Processing 519/671 atomic regions from SNP 155439 to 156039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,487 DEBUG Processing 413/567 atomic regions from SNP 123758 to 124358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,577 DEBUG Processing 561/729 atomic regions from SNP 168270 to 168870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,639 DEBUG Processing 15/541 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,652 DEBUG Processing 503/605 atomic regions from SNP 150720 to 151320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,671 DEBUG Processing 557/685 atomic regions from SNP 166800 to 167400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,695 DEBUG Processing 414/567 atomic regions from SNP 124058 to 124658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,703 DEBUG Processing 520/671 atomic regions from SNP 155739 to 156339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,825 DEBUG Processing 562/729 atomic regions from SNP 168570 to 169170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,859 DEBUG Processing 16/541 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,860 DEBUG Processing 504/605 atomic regions from SNP 151020 to 151620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,900 DEBUG Processing 415/567 atomic regions from SNP 124358 to 124958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,910 DEBUG Processing 558/685 atomic regions from SNP 167100 to 167700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,922 DEBUG Processing 521/671 atomic regions from SNP 156039 to 156639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,066 DEBUG Processing 505/605 atomic regions from SNP 151320 to 151920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,069 DEBUG Processing 17/541 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,072 DEBUG Processing 563/729 atomic regions from SNP 168870 to 169470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,107 DEBUG Processing 416/567 atomic regions from SNP 124658 to 125258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,140 DEBUG Processing 522/671 atomic regions from SNP 156339 to 156939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,146 DEBUG Processing 559/685 atomic regions from SNP 167400 to 168000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,273 DEBUG Processing 506/605 atomic regions from SNP 151620 to 152220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,294 DEBUG Processing 18/541 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,313 DEBUG Processing 417/567 atomic regions from SNP 124958 to 125558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,317 DEBUG Processing 564/729 atomic regions from SNP 169170 to 169770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,359 DEBUG Processing 523/671 atomic regions from SNP 156639 to 157239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,389 DEBUG Processing 560/685 atomic regions from SNP 167700 to 168300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,481 DEBUG Processing 507/605 atomic regions from SNP 151920 to 152520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,521 DEBUG Processing 19/541 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,522 DEBUG Processing 418/567 atomic regions from SNP 125258 to 125858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,572 DEBUG Processing 565/729 atomic regions from SNP 169470 to 170070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,581 DEBUG Processing 524/671 atomic regions from SNP 156939 to 157539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,637 DEBUG Processing 561/685 atomic regions from SNP 168000 to 168600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,688 DEBUG Processing 508/605 atomic regions from SNP 152220 to 152820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,731 DEBUG Processing 419/567 atomic regions from SNP 125558 to 126158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,747 DEBUG Processing 20/541 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,806 DEBUG Processing 525/671 atomic regions from SNP 157239 to 157839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,831 DEBUG Processing 566/729 atomic regions from SNP 169770 to 170370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,888 DEBUG Processing 562/685 atomic regions from SNP 168300 to 168900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,918 DEBUG Processing 509/605 atomic regions from SNP 152520 to 153120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,935 DEBUG Processing 420/567 atomic regions from SNP 125858 to 126458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,983 DEBUG Processing 21/541 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,019 DEBUG Processing 526/671 atomic regions from SNP 157539 to 158139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,079 DEBUG Processing 567/729 atomic regions from SNP 170070 to 170670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,127 DEBUG Processing 563/685 atomic regions from SNP 168600 to 169200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,131 DEBUG Processing 510/605 atomic regions from SNP 152820 to 153420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,146 DEBUG Processing 421/567 atomic regions from SNP 126158 to 126758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,209 DEBUG Processing 22/541 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,235 DEBUG Processing 527/671 atomic regions from SNP 157839 to 158439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,325 DEBUG Processing 568/729 atomic regions from SNP 170370 to 170970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,343 DEBUG Processing 511/605 atomic regions from SNP 153120 to 153720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,354 DEBUG Processing 422/567 atomic regions from SNP 126458 to 127058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,355 DEBUG Processing 564/685 atomic regions from SNP 168900 to 169500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,427 DEBUG Processing 23/541 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,450 DEBUG Processing 528/671 atomic regions from SNP 158139 to 158739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,566 DEBUG Processing 569/729 atomic regions from SNP 170670 to 171270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,567 DEBUG Processing 423/567 atomic regions from SNP 126758 to 127358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,573 DEBUG Processing 512/605 atomic regions from SNP 153420 to 154020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,594 DEBUG Processing 565/685 atomic regions from SNP 169200 to 169800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,645 DEBUG Processing 24/541 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,682 DEBUG Processing 529/671 atomic regions from SNP 158439 to 159039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,780 DEBUG Processing 424/567 atomic regions from SNP 127058 to 127658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,806 DEBUG Processing 570/729 atomic regions from SNP 170970 to 171570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,822 DEBUG Processing 513/605 atomic regions from SNP 153720 to 154320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,832 DEBUG Processing 566/685 atomic regions from SNP 169500 to 170100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,869 DEBUG Processing 25/541 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,918 DEBUG Processing 530/671 atomic regions from SNP 158739 to 159339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,999 DEBUG Processing 425/567 atomic regions from SNP 127358 to 127958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,058 DEBUG Processing 571/729 atomic regions from SNP 171270 to 171870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,074 DEBUG Processing 567/685 atomic regions from SNP 169800 to 170400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,077 DEBUG Processing 514/605 atomic regions from SNP 154020 to 154620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,090 DEBUG Processing 26/541 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,142 DEBUG Processing 531/671 atomic regions from SNP 159039 to 159639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,201 DEBUG Processing 426/567 atomic regions from SNP 127658 to 128258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,314 DEBUG Processing 27/541 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,319 DEBUG Processing 568/685 atomic regions from SNP 170100 to 170700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,321 DEBUG Processing 572/729 atomic regions from SNP 171570 to 172170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,326 DEBUG Processing 515/605 atomic regions from SNP 154320 to 154920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,381 DEBUG Processing 532/671 atomic regions from SNP 159339 to 159939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,409 DEBUG Processing 427/567 atomic regions from SNP 127958 to 128558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,529 DEBUG Processing 28/541 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,556 DEBUG Processing 569/685 atomic regions from SNP 170400 to 171000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,573 DEBUG Processing 516/605 atomic regions from SNP 154620 to 155220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,594 DEBUG Processing 573/729 atomic regions from SNP 171870 to 172470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,611 DEBUG Processing 533/671 atomic regions from SNP 159639 to 160239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,622 DEBUG Processing 428/567 atomic regions from SNP 128258 to 128858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,735 DEBUG Processing 29/541 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,792 DEBUG Processing 570/685 atomic regions from SNP 170700 to 171300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,834 DEBUG Processing 517/605 atomic regions from SNP 154920 to 155520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,842 DEBUG Processing 429/567 atomic regions from SNP 128558 to 129158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,844 DEBUG Processing 534/671 atomic regions from SNP 159939 to 160539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,868 DEBUG Processing 574/729 atomic regions from SNP 172170 to 172770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,934 DEBUG Processing 30/541 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,037 DEBUG Processing 571/685 atomic regions from SNP 171000 to 171600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,059 DEBUG Processing 430/567 atomic regions from SNP 128858 to 129458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,071 DEBUG Processing 535/671 atomic regions from SNP 160239 to 160839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,073 DEBUG Processing 518/605 atomic regions from SNP 155220 to 155820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,129 DEBUG Processing 575/729 atomic regions from SNP 172470 to 173070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,141 DEBUG Processing 31/541 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,275 DEBUG Processing 431/567 atomic regions from SNP 129158 to 129758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,279 DEBUG Processing 572/685 atomic regions from SNP 171300 to 171900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,292 DEBUG Processing 519/605 atomic regions from SNP 155520 to 156120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,302 DEBUG Processing 536/671 atomic regions from SNP 160539 to 161139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,357 DEBUG Processing 32/541 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,401 DEBUG Processing 576/729 atomic regions from SNP 172770 to 173370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,487 DEBUG Processing 432/567 atomic regions from SNP 129458 to 130058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,510 DEBUG Processing 520/605 atomic regions from SNP 155820 to 156420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,511 DEBUG Processing 573/685 atomic regions from SNP 171600 to 172200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,529 DEBUG Processing 537/671 atomic regions from SNP 160839 to 161439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,572 DEBUG Processing 33/541 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,668 DEBUG Processing 577/729 atomic regions from SNP 173070 to 173670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,701 DEBUG Processing 433/567 atomic regions from SNP 129758 to 130358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,732 DEBUG Processing 521/605 atomic regions from SNP 156120 to 156720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,745 DEBUG Processing 574/685 atomic regions from SNP 171900 to 172500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,759 DEBUG Processing 538/671 atomic regions from SNP 161139 to 161739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,790 DEBUG Processing 34/541 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,916 DEBUG Processing 434/567 atomic regions from SNP 130058 to 130658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,937 DEBUG Processing 578/729 atomic regions from SNP 173370 to 173970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,950 DEBUG Processing 522/605 atomic regions from SNP 156420 to 157020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,982 DEBUG Processing 575/685 atomic regions from SNP 172200 to 172800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,991 DEBUG Processing 539/671 atomic regions from SNP 161439 to 162039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,010 DEBUG Processing 35/541 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,123 DEBUG Processing 435/567 atomic regions from SNP 130358 to 130958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,166 DEBUG Processing 523/605 atomic regions from SNP 156720 to 157320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,197 DEBUG Processing 579/729 atomic regions from SNP 173670 to 174270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,219 DEBUG Processing 576/685 atomic regions from SNP 172500 to 173100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,223 DEBUG Processing 540/671 atomic regions from SNP 161739 to 162339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,226 DEBUG Processing 36/541 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,326 DEBUG Processing 436/567 atomic regions from SNP 130658 to 131258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,377 DEBUG Processing 524/605 atomic regions from SNP 157020 to 157620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,450 DEBUG Processing 37/541 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,456 DEBUG Processing 541/671 atomic regions from SNP 162039 to 162639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,461 DEBUG Processing 577/685 atomic regions from SNP 172800 to 173400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,463 DEBUG Processing 580/729 atomic regions from SNP 173970 to 174570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,541 DEBUG Processing 437/567 atomic regions from SNP 130958 to 131558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,591 DEBUG Processing 525/605 atomic regions from SNP 157320 to 157920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,676 DEBUG Processing 38/541 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,694 DEBUG Processing 542/671 atomic regions from SNP 162339 to 162939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,720 DEBUG Processing 578/685 atomic regions from SNP 173100 to 173700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,737 DEBUG Processing 581/729 atomic regions from SNP 174270 to 174870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,756 DEBUG Processing 438/567 atomic regions from SNP 131258 to 131858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,806 DEBUG Processing 526/605 atomic regions from SNP 157620 to 158220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,884 DEBUG Processing 39/541 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,919 DEBUG Processing 543/671 atomic regions from SNP 162639 to 163239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,962 DEBUG Processing 579/685 atomic regions from SNP 173400 to 174000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,982 DEBUG Processing 439/567 atomic regions from SNP 131558 to 132158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,009 DEBUG Processing 582/729 atomic regions from SNP 174570 to 175170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,024 DEBUG Processing 527/605 atomic regions from SNP 157920 to 158520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,081 DEBUG Processing 40/541 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,134 DEBUG Processing 544/671 atomic regions from SNP 162939 to 163539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,185 DEBUG Processing 580/685 atomic regions from SNP 173700 to 174300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,189 DEBUG Processing 440/567 atomic regions from SNP 131858 to 132458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,236 DEBUG Processing 528/605 atomic regions from SNP 158220 to 158820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,270 DEBUG Processing 583/729 atomic regions from SNP 174870 to 175470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,285 DEBUG Processing 41/541 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,350 DEBUG Processing 545/671 atomic regions from SNP 163239 to 163839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,403 DEBUG Processing 441/567 atomic regions from SNP 132158 to 132758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,406 DEBUG Processing 581/685 atomic regions from SNP 174000 to 174600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,455 DEBUG Processing 529/605 atomic regions from SNP 158520 to 159120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,497 DEBUG Processing 42/541 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,548 DEBUG Processing 584/729 atomic regions from SNP 175170 to 175770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,575 DEBUG Processing 546/671 atomic regions from SNP 163539 to 164139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,607 DEBUG Processing 442/567 atomic regions from SNP 132458 to 133058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,628 DEBUG Processing 582/685 atomic regions from SNP 174300 to 174900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,662 DEBUG Processing 530/605 atomic regions from SNP 158820 to 159420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,704 DEBUG Processing 43/541 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,810 DEBUG Processing 547/671 atomic regions from SNP 163839 to 164439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,810 DEBUG Processing 443/567 atomic regions from SNP 132758 to 133358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,817 DEBUG Processing 585/729 atomic regions from SNP 175470 to 176070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,860 DEBUG Processing 583/685 atomic regions from SNP 174600 to 175200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,873 DEBUG Processing 531/605 atomic regions from SNP 159120 to 159720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,909 DEBUG Processing 44/541 atomic regions from SNP 12943 to 13543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,015 DEBUG Processing 444/567 atomic regions from SNP 133058 to 133658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,049 DEBUG Processing 548/671 atomic regions from SNP 164139 to 164739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,075 DEBUG Processing 586/729 atomic regions from SNP 175770 to 176370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,083 DEBUG Processing 584/685 atomic regions from SNP 174900 to 175500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,085 DEBUG Processing 532/605 atomic regions from SNP 159420 to 160020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,117 DEBUG Processing 45/541 atomic regions from SNP 13243 to 13843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,215 DEBUG Processing 445/567 atomic regions from SNP 133358 to 133958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,278 DEBUG Processing 549/671 atomic regions from SNP 164439 to 165039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,297 DEBUG Processing 533/605 atomic regions from SNP 159720 to 160320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,310 DEBUG Processing 585/685 atomic regions from SNP 175200 to 175800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,323 DEBUG Processing 587/729 atomic regions from SNP 176070 to 176670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,327 DEBUG Processing 46/541 atomic regions from SNP 13543 to 14143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,420 DEBUG Processing 446/567 atomic regions from SNP 133658 to 134258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,520 DEBUG Processing 550/671 atomic regions from SNP 164739 to 165339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,529 DEBUG Processing 534/605 atomic regions from SNP 160020 to 160620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,546 DEBUG Processing 47/541 atomic regions from SNP 13843 to 14443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,549 DEBUG Processing 586/685 atomic regions from SNP 175500 to 176100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,570 DEBUG Processing 588/729 atomic regions from SNP 176370 to 176970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,627 DEBUG Processing 447/567 atomic regions from SNP 133958 to 134558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,748 DEBUG Processing 535/605 atomic regions from SNP 160320 to 160920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,759 DEBUG Processing 551/671 atomic regions from SNP 165039 to 165639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,764 DEBUG Processing 48/541 atomic regions from SNP 14143 to 14743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,784 DEBUG Processing 587/685 atomic regions from SNP 175800 to 176400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,810 DEBUG Processing 589/729 atomic regions from SNP 176670 to 177270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,835 DEBUG Processing 448/567 atomic regions from SNP 134258 to 134858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,970 DEBUG Processing 536/605 atomic regions from SNP 160620 to 161220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,985 DEBUG Processing 49/541 atomic regions from SNP 14443 to 15043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,006 DEBUG Processing 552/671 atomic regions from SNP 165339 to 165939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,022 DEBUG Processing 588/685 atomic regions from SNP 176100 to 176700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,055 DEBUG Processing 449/567 atomic regions from SNP 134558 to 135158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,061 DEBUG Processing 590/729 atomic regions from SNP 176970 to 177570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,192 DEBUG Processing 537/605 atomic regions from SNP 160920 to 161520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,192 DEBUG Processing 50/541 atomic regions from SNP 14743 to 15343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,254 DEBUG Processing 553/671 atomic regions from SNP 165639 to 166239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,258 DEBUG Processing 589/685 atomic regions from SNP 176400 to 177000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,280 DEBUG Processing 450/567 atomic regions from SNP 134858 to 135458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,307 DEBUG Processing 591/729 atomic regions from SNP 177270 to 177870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,391 DEBUG Processing 51/541 atomic regions from SNP 15043 to 15643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,394 DEBUG Processing 538/605 atomic regions from SNP 161220 to 161820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,491 DEBUG Processing 451/567 atomic regions from SNP 135158 to 135758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,501 DEBUG Processing 590/685 atomic regions from SNP 176700 to 177300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,504 DEBUG Processing 554/671 atomic regions from SNP 165939 to 166539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,545 DEBUG Processing 592/729 atomic regions from SNP 177570 to 178170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,594 DEBUG Processing 52/541 atomic regions from SNP 15343 to 15943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,605 DEBUG Processing 539/605 atomic regions from SNP 161520 to 162120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,699 DEBUG Processing 452/567 atomic regions from SNP 135458 to 136058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,740 DEBUG Processing 555/671 atomic regions from SNP 166239 to 166839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,747 DEBUG Processing 591/685 atomic regions from SNP 177000 to 177600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,783 DEBUG Processing 593/729 atomic regions from SNP 177870 to 178470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,807 DEBUG Processing 53/541 atomic regions from SNP 15643 to 16243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,815 DEBUG Processing 540/605 atomic regions from SNP 161820 to 162420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,901 DEBUG Processing 453/567 atomic regions from SNP 135758 to 136358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,968 DEBUG Processing 556/671 atomic regions from SNP 166539 to 167139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,971 DEBUG Processing 592/685 atomic regions from SNP 177300 to 177900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,013 DEBUG Processing 54/541 atomic regions from SNP 15943 to 16543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,037 DEBUG Processing 594/729 atomic regions from SNP 178170 to 178770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,038 DEBUG Processing 541/605 atomic regions from SNP 162120 to 162720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,101 DEBUG Processing 454/567 atomic regions from SNP 136058 to 136658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,194 DEBUG Processing 593/685 atomic regions from SNP 177600 to 178200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,207 DEBUG Processing 557/671 atomic regions from SNP 166839 to 167439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,220 DEBUG Processing 55/541 atomic regions from SNP 16243 to 16843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,262 DEBUG Processing 542/605 atomic regions from SNP 162420 to 163020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,293 DEBUG Processing 595/729 atomic regions from SNP 178470 to 179070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,309 DEBUG Processing 455/567 atomic regions from SNP 136358 to 136958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,419 DEBUG Processing 594/685 atomic regions from SNP 177900 to 178500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,439 DEBUG Processing 56/541 atomic regions from SNP 16543 to 17143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,446 DEBUG Processing 558/671 atomic regions from SNP 167139 to 167739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,483 DEBUG Processing 543/605 atomic regions from SNP 162720 to 163320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,515 DEBUG Processing 456/567 atomic regions from SNP 136658 to 137258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,542 DEBUG Processing 596/729 atomic regions from SNP 178770 to 179370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,641 DEBUG Processing 595/685 atomic regions from SNP 178200 to 178800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,652 DEBUG Processing 57/541 atomic regions from SNP 16843 to 17443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,665 DEBUG Processing 559/671 atomic regions from SNP 167439 to 168039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,688 DEBUG Processing 544/605 atomic regions from SNP 163020 to 163620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,715 DEBUG Processing 457/567 atomic regions from SNP 136958 to 137558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,790 DEBUG Processing 597/729 atomic regions from SNP 179070 to 179670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,867 DEBUG Processing 58/541 atomic regions from SNP 17143 to 17743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,868 DEBUG Processing 596/685 atomic regions from SNP 178500 to 179100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,885 DEBUG Processing 560/671 atomic regions from SNP 167739 to 168339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,895 DEBUG Processing 545/605 atomic regions from SNP 163320 to 163920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,920 DEBUG Processing 458/567 atomic regions from SNP 137258 to 137858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,038 DEBUG Processing 598/729 atomic regions from SNP 179370 to 179970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,088 DEBUG Processing 59/541 atomic regions from SNP 17443 to 18043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,099 DEBUG Processing 597/685 atomic regions from SNP 178800 to 179400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,116 DEBUG Processing 561/671 atomic regions from SNP 168039 to 168639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,118 DEBUG Processing 546/605 atomic regions from SNP 163620 to 164220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,145 DEBUG Processing 459/567 atomic regions from SNP 137558 to 138158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,293 DEBUG Processing 599/729 atomic regions from SNP 179670 to 180270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,302 DEBUG Processing 60/541 atomic regions from SNP 17743 to 18343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,328 DEBUG Processing 598/685 atomic regions from SNP 179100 to 179700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,332 DEBUG Processing 547/605 atomic regions from SNP 163920 to 164520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,345 DEBUG Processing 562/671 atomic regions from SNP 168339 to 168939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,359 DEBUG Processing 460/567 atomic regions from SNP 137858 to 138458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,514 DEBUG Processing 61/541 atomic regions from SNP 18043 to 18643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,553 DEBUG Processing 548/605 atomic regions from SNP 164220 to 164820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,556 DEBUG Processing 600/729 atomic regions from SNP 179970 to 180570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,559 DEBUG Processing 599/685 atomic regions from SNP 179400 to 180000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,576 DEBUG Processing 563/671 atomic regions from SNP 168639 to 169239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,578 DEBUG Processing 461/567 atomic regions from SNP 138158 to 138758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,718 DEBUG Processing 62/541 atomic regions from SNP 18343 to 18943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,776 DEBUG Processing 549/605 atomic regions from SNP 164520 to 165120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,792 DEBUG Processing 600/685 atomic regions from SNP 179700 to 180300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,802 DEBUG Processing 462/567 atomic regions from SNP 138458 to 139058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,806 DEBUG Processing 564/671 atomic regions from SNP 168939 to 169539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,822 DEBUG Processing 601/729 atomic regions from SNP 180270 to 180870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,916 DEBUG Processing 63/541 atomic regions from SNP 18643 to 19243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,990 DEBUG Processing 550/605 atomic regions from SNP 164820 to 165420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,018 DEBUG Processing 463/567 atomic regions from SNP 138758 to 139358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,026 DEBUG Processing 601/685 atomic regions from SNP 180000 to 180600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,039 DEBUG Processing 565/671 atomic regions from SNP 169239 to 169839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,085 DEBUG Processing 602/729 atomic regions from SNP 180570 to 181170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,123 DEBUG Processing 64/541 atomic regions from SNP 18943 to 19543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,197 DEBUG Processing 551/605 atomic regions from SNP 165120 to 165720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,229 DEBUG Processing 464/567 atomic regions from SNP 139058 to 139658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,261 DEBUG Processing 602/685 atomic regions from SNP 180300 to 180900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,285 DEBUG Processing 566/671 atomic regions from SNP 169539 to 170139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,338 DEBUG Processing 65/541 atomic regions from SNP 19243 to 19843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,352 DEBUG Processing 603/729 atomic regions from SNP 180870 to 181470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,405 DEBUG Processing 552/605 atomic regions from SNP 165420 to 166020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,433 DEBUG Processing 465/567 atomic regions from SNP 139358 to 139958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,488 DEBUG Processing 603/685 atomic regions from SNP 180600 to 181200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,534 DEBUG Processing 567/671 atomic regions from SNP 169839 to 170439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,561 DEBUG Processing 66/541 atomic regions from SNP 19543 to 20143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,604 DEBUG Processing 604/729 atomic regions from SNP 181170 to 181770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,619 DEBUG Processing 553/605 atomic regions from SNP 165720 to 166320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,643 DEBUG Processing 466/567 atomic regions from SNP 139658 to 140258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,711 DEBUG Processing 604/685 atomic regions from SNP 180900 to 181500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,786 DEBUG Processing 568/671 atomic regions from SNP 170139 to 170739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,793 DEBUG Processing 67/541 atomic regions from SNP 19843 to 20443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,852 DEBUG Processing 554/605 atomic regions from SNP 166020 to 166620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,857 DEBUG Processing 467/567 atomic regions from SNP 139958 to 140558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,870 DEBUG Processing 605/729 atomic regions from SNP 181470 to 182070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,946 DEBUG Processing 605/685 atomic regions from SNP 181200 to 181800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,016 DEBUG Processing 68/541 atomic regions from SNP 20143 to 20743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,024 DEBUG Processing 569/671 atomic regions from SNP 170439 to 171039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,070 DEBUG Processing 555/605 atomic regions from SNP 166320 to 166920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,076 DEBUG Processing 468/567 atomic regions from SNP 140258 to 140858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,143 DEBUG Processing 606/729 atomic regions from SNP 181770 to 182370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,168 DEBUG Processing 606/685 atomic regions from SNP 181500 to 182100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,237 DEBUG Processing 69/541 atomic regions from SNP 20443 to 21043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,252 DEBUG Processing 570/671 atomic regions from SNP 170739 to 171339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,287 DEBUG Processing 556/605 atomic regions from SNP 166620 to 167220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,294 DEBUG Processing 469/567 atomic regions from SNP 140558 to 141158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,401 DEBUG Processing 607/685 atomic regions from SNP 181800 to 182400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,419 DEBUG Processing 607/729 atomic regions from SNP 182070 to 182670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,455 DEBUG Processing 70/541 atomic regions from SNP 20743 to 21343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,481 DEBUG Processing 571/671 atomic regions from SNP 171039 to 171639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,509 DEBUG Processing 557/605 atomic regions from SNP 166920 to 167520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,510 DEBUG Processing 470/567 atomic regions from SNP 140858 to 141458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,638 DEBUG Processing 608/685 atomic regions from SNP 182100 to 182700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,677 DEBUG Processing 71/541 atomic regions from SNP 21043 to 21643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,689 DEBUG Processing 608/729 atomic regions from SNP 182370 to 182970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,736 DEBUG Processing 572/671 atomic regions from SNP 171339 to 171939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,737 DEBUG Processing 471/567 atomic regions from SNP 141158 to 141758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,738 DEBUG Processing 558/605 atomic regions from SNP 167220 to 167820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,891 DEBUG Processing 609/685 atomic regions from SNP 182400 to 183000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,894 DEBUG Processing 72/541 atomic regions from SNP 21343 to 21943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,944 DEBUG Processing 609/729 atomic regions from SNP 182670 to 183270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,959 DEBUG Processing 472/567 atomic regions from SNP 141458 to 142058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,968 DEBUG Processing 559/605 atomic regions from SNP 167520 to 168120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,995 DEBUG Processing 573/671 atomic regions from SNP 171639 to 172239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,104 DEBUG Processing 73/541 atomic regions from SNP 21643 to 22243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,126 DEBUG Processing 610/685 atomic regions from SNP 182700 to 183300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,186 DEBUG Processing 473/567 atomic regions from SNP 141758 to 142358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,211 DEBUG Processing 610/729 atomic regions from SNP 182970 to 183570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,213 DEBUG Processing 560/605 atomic regions from SNP 167820 to 168420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,242 DEBUG Processing 574/671 atomic regions from SNP 171939 to 172539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,316 DEBUG Processing 74/541 atomic regions from SNP 21943 to 22543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,352 DEBUG Processing 611/685 atomic regions from SNP 183000 to 183600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,407 DEBUG Processing 474/567 atomic regions from SNP 142058 to 142658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,444 DEBUG Processing 561/605 atomic regions from SNP 168120 to 168720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,482 DEBUG Processing 575/671 atomic regions from SNP 172239 to 172839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,484 DEBUG Processing 611/729 atomic regions from SNP 183270 to 183870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,527 DEBUG Processing 75/541 atomic regions from SNP 22243 to 22843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,577 DEBUG Processing 612/685 atomic regions from SNP 183300 to 183900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,614 DEBUG Processing 475/567 atomic regions from SNP 142358 to 142958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,692 DEBUG Processing 562/605 atomic regions from SNP 168420 to 169020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,720 DEBUG Processing 576/671 atomic regions from SNP 172539 to 173139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,754 DEBUG Processing 76/541 atomic regions from SNP 22543 to 23143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,765 DEBUG Processing 612/729 atomic regions from SNP 183570 to 184170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,820 DEBUG Processing 613/685 atomic regions from SNP 183600 to 184200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,832 DEBUG Processing 476/567 atomic regions from SNP 142658 to 143258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,913 DEBUG Processing 563/605 atomic regions from SNP 168720 to 169320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,947 DEBUG Processing 577/671 atomic regions from SNP 172839 to 173439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,970 DEBUG Processing 77/541 atomic regions from SNP 22843 to 23443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,033 DEBUG Processing 613/729 atomic regions from SNP 183870 to 184470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,046 DEBUG Processing 477/567 atomic regions from SNP 142958 to 143558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,059 DEBUG Processing 614/685 atomic regions from SNP 183900 to 184500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,124 DEBUG Processing 564/605 atomic regions from SNP 169020 to 169620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,170 DEBUG Processing 578/671 atomic regions from SNP 173139 to 173739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,180 DEBUG Processing 78/541 atomic regions from SNP 23143 to 23743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,259 DEBUG Processing 478/567 atomic regions from SNP 143258 to 143858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,289 DEBUG Processing 614/729 atomic regions from SNP 184170 to 184770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,300 DEBUG Processing 615/685 atomic regions from SNP 184200 to 184800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,343 DEBUG Processing 565/605 atomic regions from SNP 169320 to 169920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,394 DEBUG Processing 79/541 atomic regions from SNP 23443 to 24043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,396 DEBUG Processing 579/671 atomic regions from SNP 173439 to 174039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,469 DEBUG Processing 479/567 atomic regions from SNP 143558 to 144158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,530 DEBUG Processing 615/729 atomic regions from SNP 184470 to 185070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,540 DEBUG Processing 616/685 atomic regions from SNP 184500 to 185100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,568 DEBUG Processing 566/605 atomic regions from SNP 169620 to 170220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,610 DEBUG Processing 80/541 atomic regions from SNP 23743 to 24343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,631 DEBUG Processing 580/671 atomic regions from SNP 173739 to 174339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,678 DEBUG Processing 480/567 atomic regions from SNP 143858 to 144458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,776 DEBUG Processing 617/685 atomic regions from SNP 184800 to 185400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,778 DEBUG Processing 616/729 atomic regions from SNP 184770 to 185370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,791 DEBUG Processing 567/605 atomic regions from SNP 169920 to 170520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,827 DEBUG Processing 81/541 atomic regions from SNP 24043 to 24643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,868 DEBUG Processing 581/671 atomic regions from SNP 174039 to 174639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,890 DEBUG Processing 481/567 atomic regions from SNP 144158 to 144758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,003 DEBUG Processing 618/685 atomic regions from SNP 185100 to 185700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,015 DEBUG Processing 568/605 atomic regions from SNP 170220 to 170820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,023 DEBUG Processing 617/729 atomic regions from SNP 185070 to 185670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,049 DEBUG Processing 82/541 atomic regions from SNP 24343 to 24943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,105 DEBUG Processing 482/567 atomic regions from SNP 144458 to 145058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,127 DEBUG Processing 582/671 atomic regions from SNP 174339 to 174939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,229 DEBUG Processing 619/685 atomic regions from SNP 185400 to 186000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,235 DEBUG Processing 569/605 atomic regions from SNP 170520 to 171120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,261 DEBUG Processing 83/541 atomic regions from SNP 24643 to 25243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,266 DEBUG Processing 618/729 atomic regions from SNP 185370 to 185970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,323 DEBUG Processing 483/567 atomic regions from SNP 144758 to 145358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,377 DEBUG Processing 583/671 atomic regions from SNP 174639 to 175239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,455 DEBUG Processing 620/685 atomic regions from SNP 185700 to 186300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,466 DEBUG Processing 570/605 atomic regions from SNP 170820 to 171420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,481 DEBUG Processing 84/541 atomic regions from SNP 24943 to 25543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,522 DEBUG Processing 619/729 atomic regions from SNP 185670 to 186270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,538 DEBUG Processing 484/567 atomic regions from SNP 145058 to 145658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,604 DEBUG Processing 584/671 atomic regions from SNP 174939 to 175539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,683 DEBUG Processing 621/685 atomic regions from SNP 186000 to 186600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,691 DEBUG Processing 85/541 atomic regions from SNP 25243 to 25843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,707 DEBUG Processing 571/605 atomic regions from SNP 171120 to 171720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,749 DEBUG Processing 485/567 atomic regions from SNP 145358 to 145958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,762 DEBUG Processing 620/729 atomic regions from SNP 185970 to 186570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,835 DEBUG Processing 585/671 atomic regions from SNP 175239 to 175839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,905 DEBUG Processing 86/541 atomic regions from SNP 25543 to 26143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,911 DEBUG Processing 622/685 atomic regions from SNP 186300 to 186900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,929 DEBUG Processing 572/605 atomic regions from SNP 171420 to 172020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,958 DEBUG Processing 486/567 atomic regions from SNP 145658 to 146258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,005 DEBUG Processing 621/729 atomic regions from SNP 186270 to 186870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,078 DEBUG Processing 586/671 atomic regions from SNP 175539 to 176139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,121 DEBUG Processing 87/541 atomic regions from SNP 25843 to 26443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,142 DEBUG Processing 623/685 atomic regions from SNP 186600 to 187200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,163 DEBUG Processing 573/605 atomic regions from SNP 171720 to 172320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,171 DEBUG Processing 487/567 atomic regions from SNP 145958 to 146558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,249 DEBUG Processing 622/729 atomic regions from SNP 186570 to 187170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,322 DEBUG Processing 587/671 atomic regions from SNP 175839 to 176439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,343 DEBUG Processing 88/541 atomic regions from SNP 26143 to 26743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,382 DEBUG Processing 624/685 atomic regions from SNP 186900 to 187500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,386 DEBUG Processing 488/567 atomic regions from SNP 146258 to 146858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,421 DEBUG Processing 574/605 atomic regions from SNP 172020 to 172620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,487 DEBUG Processing 623/729 atomic regions from SNP 186870 to 187470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,566 DEBUG Processing 89/541 atomic regions from SNP 26443 to 27043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,578 DEBUG Processing 588/671 atomic regions from SNP 176139 to 176739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,608 DEBUG Processing 489/567 atomic regions from SNP 146558 to 147158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,637 DEBUG Processing 625/685 atomic regions from SNP 187200 to 187800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,680 DEBUG Processing 575/605 atomic regions from SNP 172320 to 172920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,722 DEBUG Processing 624/729 atomic regions from SNP 187170 to 187770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,784 DEBUG Processing 90/541 atomic regions from SNP 26743 to 27343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,828 DEBUG Processing 490/567 atomic regions from SNP 146858 to 147458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,830 DEBUG Processing 589/671 atomic regions from SNP 176439 to 177039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,885 DEBUG Processing 626/685 atomic regions from SNP 187500 to 188100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,937 DEBUG Processing 576/605 atomic regions from SNP 172620 to 173220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,966 DEBUG Processing 625/729 atomic regions from SNP 187470 to 188070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,000 DEBUG Processing 91/541 atomic regions from SNP 27043 to 27643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,045 DEBUG Processing 491/567 atomic regions from SNP 147158 to 147758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,061 DEBUG Processing 590/671 atomic regions from SNP 176739 to 177339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,127 DEBUG Processing 627/685 atomic regions from SNP 187800 to 188400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,185 DEBUG Processing 577/605 atomic regions from SNP 172920 to 173520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,230 DEBUG Processing 92/541 atomic regions from SNP 27343 to 27943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,233 DEBUG Processing 626/729 atomic regions from SNP 187770 to 188370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,279 DEBUG Processing 492/567 atomic regions from SNP 147458 to 148058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,305 DEBUG Processing 591/671 atomic regions from SNP 177039 to 177639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,364 DEBUG Processing 628/685 atomic regions from SNP 188100 to 188700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,444 DEBUG Processing 578/605 atomic regions from SNP 173220 to 173820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,445 DEBUG Processing 93/541 atomic regions from SNP 27643 to 28243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,488 DEBUG Processing 627/729 atomic regions from SNP 188070 to 188670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,494 DEBUG Processing 493/567 atomic regions from SNP 147758 to 148358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,532 DEBUG Processing 592/671 atomic regions from SNP 177339 to 177939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,584 DEBUG Processing 629/685 atomic regions from SNP 188400 to 189000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,657 DEBUG Processing 94/541 atomic regions from SNP 27943 to 28543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,697 DEBUG Processing 579/605 atomic regions from SNP 173520 to 174120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,712 DEBUG Processing 494/567 atomic regions from SNP 148058 to 148658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,733 DEBUG Processing 628/729 atomic regions from SNP 188370 to 188970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,760 DEBUG Processing 593/671 atomic regions from SNP 177639 to 178239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,809 DEBUG Processing 630/685 atomic regions from SNP 188700 to 189300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,873 DEBUG Processing 95/541 atomic regions from SNP 28243 to 28843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,932 DEBUG Processing 495/567 atomic regions from SNP 148358 to 148958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,955 DEBUG Processing 580/605 atomic regions from SNP 173820 to 174420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,982 DEBUG Processing 629/729 atomic regions from SNP 188670 to 189270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,992 DEBUG Processing 594/671 atomic regions from SNP 177939 to 178539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,038 DEBUG Processing 631/685 atomic regions from SNP 189000 to 189600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,084 DEBUG Processing 96/541 atomic regions from SNP 28543 to 29143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,153 DEBUG Processing 496/567 atomic regions from SNP 148658 to 149258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,214 DEBUG Processing 581/605 atomic regions from SNP 174120 to 174720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,230 DEBUG Processing 595/671 atomic regions from SNP 178239 to 178839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,251 DEBUG Processing 630/729 atomic regions from SNP 188970 to 189570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,276 DEBUG Processing 632/685 atomic regions from SNP 189300 to 189900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,300 DEBUG Processing 97/541 atomic regions from SNP 28843 to 29443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,367 DEBUG Processing 497/567 atomic regions from SNP 148958 to 149558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,460 DEBUG Processing 582/605 atomic regions from SNP 174420 to 175020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,470 DEBUG Processing 596/671 atomic regions from SNP 178539 to 179139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,518 DEBUG Processing 633/685 atomic regions from SNP 189600 to 190200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,522 DEBUG Processing 98/541 atomic regions from SNP 29143 to 29743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,526 DEBUG Processing 631/729 atomic regions from SNP 189270 to 189870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,581 DEBUG Processing 498/567 atomic regions from SNP 149258 to 149858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,711 DEBUG Processing 583/605 atomic regions from SNP 174720 to 175320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,712 DEBUG Processing 597/671 atomic regions from SNP 178839 to 179439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,750 DEBUG Processing 99/541 atomic regions from SNP 29443 to 30043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,761 DEBUG Processing 634/685 atomic regions from SNP 189900 to 190500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,798 DEBUG Processing 499/567 atomic regions from SNP 149558 to 150158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,805 DEBUG Processing 632/729 atomic regions from SNP 189570 to 190170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,948 DEBUG Processing 598/671 atomic regions from SNP 179139 to 179739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,958 DEBUG Processing 584/605 atomic regions from SNP 175020 to 175620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,975 DEBUG Processing 100/541 atomic regions from SNP 29743 to 30343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,004 DEBUG Processing 635/685 atomic regions from SNP 190200 to 190800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,020 DEBUG Processing 500/567 atomic regions from SNP 149858 to 150458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,082 DEBUG Processing 633/729 atomic regions from SNP 189870 to 190470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,171 DEBUG Processing 599/671 atomic regions from SNP 179439 to 180039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,187 DEBUG Processing 101/541 atomic regions from SNP 30043 to 30643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,201 DEBUG Processing 585/605 atomic regions from SNP 175320 to 175920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,242 DEBUG Processing 636/685 atomic regions from SNP 190500 to 191100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,244 DEBUG Processing 501/567 atomic regions from SNP 150158 to 150758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,338 DEBUG Processing 634/729 atomic regions from SNP 190170 to 190770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,393 DEBUG Processing 600/671 atomic regions from SNP 179739 to 180339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,397 DEBUG Processing 102/541 atomic regions from SNP 30343 to 30943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,448 DEBUG Processing 586/605 atomic regions from SNP 175620 to 176220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,473 DEBUG Processing 502/567 atomic regions from SNP 150458 to 151058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,496 DEBUG Processing 637/685 atomic regions from SNP 190800 to 191400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,591 DEBUG Processing 635/729 atomic regions from SNP 190470 to 191070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,605 DEBUG Processing 103/541 atomic regions from SNP 30643 to 31243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,615 DEBUG Processing 601/671 atomic regions from SNP 180039 to 180639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,697 DEBUG Processing 587/605 atomic regions from SNP 175920 to 176520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,707 DEBUG Processing 503/567 atomic regions from SNP 150758 to 151358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,754 DEBUG Processing 638/685 atomic regions from SNP 191100 to 191700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,813 DEBUG Processing 104/541 atomic regions from SNP 30943 to 31543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,833 DEBUG Processing 636/729 atomic regions from SNP 190770 to 191370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,838 DEBUG Processing 602/671 atomic regions from SNP 180339 to 180939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,937 DEBUG Processing 588/605 atomic regions from SNP 176220 to 176820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,944 DEBUG Processing 504/567 atomic regions from SNP 151058 to 151658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,011 DEBUG Processing 639/685 atomic regions from SNP 191400 to 192000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,019 DEBUG Processing 105/541 atomic regions from SNP 31243 to 31843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,062 DEBUG Processing 603/671 atomic regions from SNP 180639 to 181239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,078 DEBUG Processing 637/729 atomic regions from SNP 191070 to 191670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,157 DEBUG Processing 505/567 atomic regions from SNP 151358 to 151958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,166 DEBUG Processing 589/605 atomic regions from SNP 176520 to 177120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,231 DEBUG Processing 106/541 atomic regions from SNP 31543 to 32143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,265 DEBUG Processing 640/685 atomic regions from SNP 191700 to 192300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,288 DEBUG Processing 604/671 atomic regions from SNP 180939 to 181539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,324 DEBUG Processing 638/729 atomic regions from SNP 191370 to 191970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,372 DEBUG Processing 506/567 atomic regions from SNP 151658 to 152258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,409 DEBUG Processing 590/605 atomic regions from SNP 176820 to 177420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,443 DEBUG Processing 107/541 atomic regions from SNP 31843 to 32443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,509 DEBUG Processing 605/671 atomic regions from SNP 181239 to 181839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,509 DEBUG Processing 641/685 atomic regions from SNP 192000 to 192600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,576 DEBUG Processing 639/729 atomic regions from SNP 191670 to 192270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,590 DEBUG Processing 507/567 atomic regions from SNP 151958 to 152558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,657 DEBUG Processing 108/541 atomic regions from SNP 32143 to 32743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,671 DEBUG Processing 591/605 atomic regions from SNP 177120 to 177720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,736 DEBUG Processing 606/671 atomic regions from SNP 181539 to 182139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,754 DEBUG Processing 642/685 atomic regions from SNP 192300 to 192900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,806 DEBUG Processing 508/567 atomic regions from SNP 152258 to 152858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,831 DEBUG Processing 640/729 atomic regions from SNP 191970 to 192570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,874 DEBUG Processing 109/541 atomic regions from SNP 32443 to 33043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,909 DEBUG Processing 592/605 atomic regions from SNP 177420 to 178020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,969 DEBUG Processing 607/671 atomic regions from SNP 181839 to 182439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,004 DEBUG Processing 643/685 atomic regions from SNP 192600 to 193200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,019 DEBUG Processing 509/567 atomic regions from SNP 152558 to 153158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,083 DEBUG Processing 641/729 atomic regions from SNP 192270 to 192870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,090 DEBUG Processing 110/541 atomic regions from SNP 32743 to 33343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,134 DEBUG Processing 593/605 atomic regions from SNP 177720 to 178320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,192 DEBUG Processing 608/671 atomic regions from SNP 182139 to 182739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,229 DEBUG Processing 510/567 atomic regions from SNP 152858 to 153458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,255 DEBUG Processing 644/685 atomic regions from SNP 192900 to 193500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,310 DEBUG Processing 111/541 atomic regions from SNP 33043 to 33643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,331 DEBUG Processing 642/729 atomic regions from SNP 192570 to 193170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,370 DEBUG Processing 594/605 atomic regions from SNP 178020 to 178620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,419 DEBUG Processing 609/671 atomic regions from SNP 182439 to 183039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,440 DEBUG Processing 511/567 atomic regions from SNP 153158 to 153758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,499 DEBUG Processing 645/685 atomic regions from SNP 193200 to 193800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,530 DEBUG Processing 112/541 atomic regions from SNP 33343 to 33943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,578 DEBUG Processing 643/729 atomic regions from SNP 192870 to 193470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,611 DEBUG Processing 595/605 atomic regions from SNP 178320 to 178920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,652 DEBUG Processing 610/671 atomic regions from SNP 182739 to 183339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,655 DEBUG Processing 512/567 atomic regions from SNP 153458 to 154058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,742 DEBUG Processing 646/685 atomic regions from SNP 193500 to 194100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,765 DEBUG Processing 113/541 atomic regions from SNP 33643 to 34243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,828 DEBUG Processing 644/729 atomic regions from SNP 193170 to 193770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,863 DEBUG Processing 596/605 atomic regions from SNP 178620 to 179220 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,871 DEBUG Processing 513/567 atomic regions from SNP 153758 to 154358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,882 DEBUG Processing 611/671 atomic regions from SNP 183039 to 183639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,964 DEBUG Processing 647/685 atomic regions from SNP 193800 to 194400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,989 DEBUG Processing 114/541 atomic regions from SNP 33943 to 34543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,082 DEBUG Processing 645/729 atomic regions from SNP 193470 to 194070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,090 DEBUG Processing 514/567 atomic regions from SNP 154058 to 154658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,115 DEBUG Processing 612/671 atomic regions from SNP 183339 to 183939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,117 DEBUG Processing 597/605 atomic regions from SNP 178920 to 179520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,187 DEBUG Processing 648/685 atomic regions from SNP 194100 to 194700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,211 DEBUG Processing 115/541 atomic regions from SNP 34243 to 34843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,309 DEBUG Processing 515/567 atomic regions from SNP 154358 to 154958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,327 DEBUG Processing 646/729 atomic regions from SNP 193770 to 194370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,349 DEBUG Processing 613/671 atomic regions from SNP 183639 to 184239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,370 DEBUG Processing 598/605 atomic regions from SNP 179220 to 179820 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,418 DEBUG Processing 649/685 atomic regions from SNP 194400 to 195000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,444 DEBUG Processing 116/541 atomic regions from SNP 34543 to 35143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,526 DEBUG Processing 516/567 atomic regions from SNP 154658 to 155258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,575 DEBUG Processing 647/729 atomic regions from SNP 194070 to 194670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,583 DEBUG Processing 614/671 atomic regions from SNP 183939 to 184539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,616 DEBUG Processing 599/605 atomic regions from SNP 179520 to 180120 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,655 DEBUG Processing 650/685 atomic regions from SNP 194700 to 195300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,674 DEBUG Processing 117/541 atomic regions from SNP 34843 to 35443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,747 DEBUG Processing 517/567 atomic regions from SNP 154958 to 155558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,821 DEBUG Processing 648/729 atomic regions from SNP 194370 to 194970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,835 DEBUG Processing 615/671 atomic regions from SNP 184239 to 184839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,861 DEBUG Processing 600/605 atomic regions from SNP 179820 to 180420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,918 DEBUG Processing 651/685 atomic regions from SNP 195000 to 195600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,925 DEBUG Processing 118/541 atomic regions from SNP 35143 to 35743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,979 DEBUG Processing 518/567 atomic regions from SNP 155258 to 155858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,061 DEBUG Processing 649/729 atomic regions from SNP 194670 to 195270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,077 DEBUG Processing 616/671 atomic regions from SNP 184539 to 185139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,101 DEBUG Processing 601/605 atomic regions from SNP 180120 to 180720 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,148 DEBUG Processing 652/685 atomic regions from SNP 195300 to 195900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,168 DEBUG Processing 119/541 atomic regions from SNP 35443 to 36043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,212 DEBUG Processing 519/567 atomic regions from SNP 155558 to 156158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,302 DEBUG Processing 650/729 atomic regions from SNP 194970 to 195570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,331 DEBUG Processing 617/671 atomic regions from SNP 184839 to 185439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,352 DEBUG Processing 602/605 atomic regions from SNP 180420 to 181020 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,379 DEBUG Processing 653/685 atomic regions from SNP 195600 to 196200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,404 DEBUG Processing 120/541 atomic regions from SNP 35743 to 36343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,445 DEBUG Processing 520/567 atomic regions from SNP 155858 to 156458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,551 DEBUG Processing 651/729 atomic regions from SNP 195270 to 195870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,593 DEBUG Processing 618/671 atomic regions from SNP 185139 to 185739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,612 DEBUG Processing 603/605 atomic regions from SNP 180720 to 181320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,615 DEBUG Processing 654/685 atomic regions from SNP 195900 to 196500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,637 DEBUG Processing 121/541 atomic regions from SNP 36043 to 36643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,674 DEBUG Processing 521/567 atomic regions from SNP 156158 to 156758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,814 DEBUG Processing 652/729 atomic regions from SNP 195570 to 196170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,856 DEBUG Processing 619/671 atomic regions from SNP 185439 to 186039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,857 DEBUG Processing 655/685 atomic regions from SNP 196200 to 196800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,870 DEBUG Processing 604/605 atomic regions from SNP 181020 to 181620 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,870 DEBUG Processing 122/541 atomic regions from SNP 36343 to 36943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,920 DEBUG Processing 522/567 atomic regions from SNP 156458 to 157058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,083 DEBUG Processing 653/729 atomic regions from SNP 195870 to 196470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,098 DEBUG Processing 656/685 atomic regions from SNP 196500 to 197100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,100 DEBUG Processing 605/605 atomic regions from SNP 181320 to 181920 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,112 DEBUG Processing 123/541 atomic regions from SNP 36643 to 37243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,113 DEBUG Processing 620/671 atomic regions from SNP 185739 to 186339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,167 DEBUG Processing 523/567 atomic regions from SNP 156758 to 157358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,238 DEBUG Unique SNPs positions in subchromosome 1: 181921 2025-01-31 09:56:32,332 DEBUG Processing 654/729 atomic regions from SNP 196170 to 196770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,334 DEBUG Processing 657/685 atomic regions from SNP 196800 to 197400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,354 DEBUG Processing 124/541 atomic regions from SNP 36943 to 37543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,367 DEBUG Processing 621/671 atomic regions from SNP 186039 to 186639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,407 DEBUG Processing 524/567 atomic regions from SNP 157058 to 157658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,556 DEBUG Processing 658/685 atomic regions from SNP 197100 to 197700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,565 DEBUG Processing 655/729 atomic regions from SNP 196470 to 197070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,594 DEBUG Processing 125/541 atomic regions from SNP 37243 to 37843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,615 DEBUG Processing 622/671 atomic regions from SNP 186339 to 186939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,648 DEBUG Processing 525/567 atomic regions from SNP 157358 to 157958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,783 DEBUG Processing 659/685 atomic regions from SNP 197400 to 198000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,806 DEBUG Processing 656/729 atomic regions from SNP 196770 to 197370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,835 DEBUG Processing 126/541 atomic regions from SNP 37543 to 38143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,879 DEBUG Processing 623/671 atomic regions from SNP 186639 to 187239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,905 DEBUG Processing 526/567 atomic regions from SNP 157658 to 158258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,016 DEBUG Processing 660/685 atomic regions from SNP 197700 to 198300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,047 DEBUG Processing 657/729 atomic regions from SNP 197070 to 197670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,087 DEBUG Processing 127/541 atomic regions from SNP 37843 to 38443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,136 DEBUG Processing 624/671 atomic regions from SNP 186939 to 187539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,160 DEBUG Processing 527/567 atomic regions from SNP 157958 to 158558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,242 DEBUG Processing 661/685 atomic regions from SNP 198000 to 198600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,290 DEBUG Processing 658/729 atomic regions from SNP 197370 to 197970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,333 DEBUG Processing 128/541 atomic regions from SNP 38143 to 38743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,393 DEBUG Processing 625/671 atomic regions from SNP 187239 to 187839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,411 DEBUG Processing 528/567 atomic regions from SNP 158258 to 158858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,468 DEBUG Processing 662/685 atomic regions from SNP 198300 to 198900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,529 DEBUG Processing 659/729 atomic regions from SNP 197670 to 198270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,573 DEBUG Processing 129/541 atomic regions from SNP 38443 to 39043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,651 DEBUG Processing 626/671 atomic regions from SNP 187539 to 188139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,664 DEBUG Processing 529/567 atomic regions from SNP 158558 to 159158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,703 DEBUG Processing 663/685 atomic regions from SNP 198600 to 199200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,769 DEBUG Processing 660/729 atomic regions from SNP 197970 to 198570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,809 DEBUG Processing 130/541 atomic regions from SNP 38743 to 39343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,906 DEBUG Processing 627/671 atomic regions from SNP 187839 to 188439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,914 DEBUG Processing 530/567 atomic regions from SNP 158858 to 159458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,937 DEBUG Processing 664/685 atomic regions from SNP 198900 to 199500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,012 DEBUG Processing 661/729 atomic regions from SNP 198270 to 198870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,049 DEBUG Processing 131/541 atomic regions from SNP 39043 to 39643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,165 DEBUG Processing 531/567 atomic regions from SNP 159158 to 159758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,167 DEBUG Processing 628/671 atomic regions from SNP 188139 to 188739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,177 DEBUG Processing 665/685 atomic regions from SNP 199200 to 199800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,251 DEBUG Processing 662/729 atomic regions from SNP 198570 to 199170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,283 DEBUG Processing 132/541 atomic regions from SNP 39343 to 39943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,404 DEBUG Processing 666/685 atomic regions from SNP 199500 to 200100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,407 DEBUG Processing 532/567 atomic regions from SNP 159458 to 160058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,410 DEBUG Processing 629/671 atomic regions from SNP 188439 to 189039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,485 DEBUG Processing 663/729 atomic regions from SNP 198870 to 199470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,507 DEBUG Processing 133/541 atomic regions from SNP 39643 to 40243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,635 DEBUG Processing 667/685 atomic regions from SNP 199800 to 200400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,669 DEBUG Processing 630/671 atomic regions from SNP 188739 to 189339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,671 DEBUG Processing 533/567 atomic regions from SNP 159758 to 160358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,727 DEBUG Processing 664/729 atomic regions from SNP 199170 to 199770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,752 DEBUG Processing 134/541 atomic regions from SNP 39943 to 40543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,864 DEBUG Processing 668/685 atomic regions from SNP 200100 to 200700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,914 DEBUG Processing 534/567 atomic regions from SNP 160058 to 160658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,929 DEBUG Processing 631/671 atomic regions from SNP 189039 to 189639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,967 DEBUG Processing 665/729 atomic regions from SNP 199470 to 200070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,995 DEBUG Processing 135/541 atomic regions from SNP 40243 to 40843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,092 DEBUG Processing 669/685 atomic regions from SNP 200400 to 201000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,156 DEBUG Processing 535/567 atomic regions from SNP 160358 to 160958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,185 DEBUG Processing 632/671 atomic regions from SNP 189339 to 189939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,212 DEBUG Processing 666/729 atomic regions from SNP 199770 to 200370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,237 DEBUG Processing 136/541 atomic regions from SNP 40543 to 41143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,311 DEBUG Processing 670/685 atomic regions from SNP 200700 to 201300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,389 DEBUG Processing 536/567 atomic regions from SNP 160658 to 161258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,436 DEBUG Processing 633/671 atomic regions from SNP 189639 to 190239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,451 DEBUG Processing 667/729 atomic regions from SNP 200070 to 200670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,473 DEBUG Processing 137/541 atomic regions from SNP 40843 to 41443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,531 DEBUG Processing 671/685 atomic regions from SNP 201000 to 201600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,629 DEBUG Processing 537/567 atomic regions from SNP 160958 to 161558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,695 DEBUG Processing 634/671 atomic regions from SNP 189939 to 190539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,702 DEBUG Processing 668/729 atomic regions from SNP 200370 to 200970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,726 DEBUG Processing 138/541 atomic regions from SNP 41143 to 41743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,766 DEBUG Processing 672/685 atomic regions from SNP 201300 to 201900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,866 DEBUG Processing 538/567 atomic regions from SNP 161258 to 161858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,932 DEBUG Processing 635/671 atomic regions from SNP 190239 to 190839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,955 DEBUG Processing 669/729 atomic regions from SNP 200670 to 201270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,977 DEBUG Processing 139/541 atomic regions from SNP 41443 to 42043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,005 DEBUG Processing 673/685 atomic regions from SNP 201600 to 202200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,104 DEBUG Processing 539/567 atomic regions from SNP 161558 to 162158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,156 DEBUG Processing 636/671 atomic regions from SNP 190539 to 191139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,196 DEBUG Processing 670/729 atomic regions from SNP 200970 to 201570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,214 DEBUG Processing 140/541 atomic regions from SNP 41743 to 42343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,241 DEBUG Processing 674/685 atomic regions from SNP 201900 to 202500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,345 DEBUG Processing 540/567 atomic regions from SNP 161858 to 162458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,382 DEBUG Processing 637/671 atomic regions from SNP 190839 to 191439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,440 DEBUG Processing 671/729 atomic regions from SNP 201270 to 201870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,454 DEBUG Processing 141/541 atomic regions from SNP 42043 to 42643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,480 DEBUG Processing 675/685 atomic regions from SNP 202200 to 202800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,600 DEBUG Processing 541/567 atomic regions from SNP 162158 to 162758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,606 DEBUG Processing 638/671 atomic regions from SNP 191139 to 191739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,674 DEBUG Processing 672/729 atomic regions from SNP 201570 to 202170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,691 DEBUG Processing 142/541 atomic regions from SNP 42343 to 42943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,709 DEBUG Processing 676/685 atomic regions from SNP 202500 to 203100 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,825 DEBUG Processing 639/671 atomic regions from SNP 191439 to 192039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,845 DEBUG Processing 542/567 atomic regions from SNP 162458 to 163058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,908 DEBUG Processing 673/729 atomic regions from SNP 201870 to 202470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,927 DEBUG Processing 143/541 atomic regions from SNP 42643 to 43243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,941 DEBUG Processing 677/685 atomic regions from SNP 202800 to 203400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,050 DEBUG Processing 640/671 atomic regions from SNP 191739 to 192339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,084 DEBUG Processing 543/567 atomic regions from SNP 162758 to 163358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,145 DEBUG Processing 674/729 atomic regions from SNP 202170 to 202770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,156 DEBUG Processing 144/541 atomic regions from SNP 42943 to 43543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,166 DEBUG Processing 678/685 atomic regions from SNP 203100 to 203700 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,271 DEBUG Processing 641/671 atomic regions from SNP 192039 to 192639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,323 DEBUG Processing 544/567 atomic regions from SNP 163058 to 163658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,385 DEBUG Processing 675/729 atomic regions from SNP 202470 to 203070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,390 DEBUG Processing 145/541 atomic regions from SNP 43243 to 43843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,395 DEBUG Processing 679/685 atomic regions from SNP 203400 to 204000 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,492 DEBUG Processing 642/671 atomic regions from SNP 192339 to 192939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,561 DEBUG Processing 545/567 atomic regions from SNP 163358 to 163958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,624 DEBUG Processing 676/729 atomic regions from SNP 202770 to 203370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,625 DEBUG Processing 680/685 atomic regions from SNP 203700 to 204300 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,629 DEBUG Processing 146/541 atomic regions from SNP 43543 to 44143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,711 DEBUG Processing 643/671 atomic regions from SNP 192639 to 193239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,763 DEBUG Subchromosome time: 165.37537576898467, subchromosome SNPs: 181921 2025-01-31 09:56:37,764 DEBUG Estimated BADs: [1.23, 2.46, 0.82, 2.46, 1.23, 2.46, 0.82, 1.23, 2.46, 0.82, 2.46, 4.92, 2.46, 4.92] SNP counts: [3120, 15335, 24057, 910, 6022, 25013, 5262, 16546, 21557, 2696, 8439, 25764, 17111, 10089] SNP IDs counts: [3120, 15335, 24057, 910, 6022, 25013, 5262, 16546, 21557, 2696, 8439, 25764, 17111, 10089] Critical gap: 543205bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 4.93Mbp, 13.47Mbp, 27.22Mbp, 27.71Mbp, 31.10Mbp, 45.15Mbp, 48.18Mbp, 57.49Mbp, 69.48Mbp, 70.99Mbp, 75.59Mbp, 89.25Mbp, 98.50Mbp, 104.04Mbp] 2025-01-31 09:56:37,764 DEBUG chr15 time: 165.37591983703896 s 2025-01-31 09:56:37,794 DEBUG Processing 546/567 atomic regions from SNP 163658 to 164258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,854 DEBUG Processing 681/685 atomic regions from SNP 204000 to 204600 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,862 DEBUG Processing 677/729 atomic regions from SNP 203070 to 203670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,863 DEBUG Processing 147/541 atomic regions from SNP 43843 to 44443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,873 DEBUG chr15: Fitting background model for 14 segments 2025-01-31 09:56:37,933 DEBUG Processing 644/671 atomic regions from SNP 192939 to 193539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,028 DEBUG Processing 547/567 atomic regions from SNP 163958 to 164558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,084 DEBUG Processing 682/685 atomic regions from SNP 204300 to 204900 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,101 DEBUG Processing 148/541 atomic regions from SNP 44143 to 44743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,105 DEBUG Processing 678/729 atomic regions from SNP 203370 to 203970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,158 DEBUG Processing 645/671 atomic regions from SNP 193239 to 193839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,265 DEBUG Processing 548/567 atomic regions from SNP 164258 to 164858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,333 DEBUG Processing 683/685 atomic regions from SNP 204600 to 205200 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,361 DEBUG Processing 679/729 atomic regions from SNP 203670 to 204270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,362 DEBUG Processing 149/541 atomic regions from SNP 44443 to 45043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,395 DEBUG Processing 646/671 atomic regions from SNP 193539 to 194139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,493 DEBUG Processing 549/567 atomic regions from SNP 164558 to 165158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,567 DEBUG Processing 684/685 atomic regions from SNP 204900 to 205500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,602 DEBUG Processing 680/729 atomic regions from SNP 203970 to 204570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,605 DEBUG Processing 150/541 atomic regions from SNP 44743 to 45343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,625 DEBUG Processing 647/671 atomic regions from SNP 193839 to 194439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,709 DEBUG Processing 550/567 atomic regions from SNP 164858 to 165458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,810 DEBUG Processing 685/685 atomic regions from SNP 205200 to 205800 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,840 DEBUG Processing 681/729 atomic regions from SNP 204270 to 204870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,849 DEBUG Processing 151/541 atomic regions from SNP 45043 to 45643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,850 DEBUG Processing 648/671 atomic regions from SNP 194139 to 194739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,928 DEBUG Processing 551/567 atomic regions from SNP 165158 to 165758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,954 DEBUG Unique SNPs positions in subchromosome 1: 205801 2025-01-31 09:56:39,079 DEBUG Processing 649/671 atomic regions from SNP 194439 to 195039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,079 DEBUG Processing 682/729 atomic regions from SNP 204570 to 205170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,086 DEBUG Processing 152/541 atomic regions from SNP 45343 to 45943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,149 DEBUG Processing 552/567 atomic regions from SNP 165458 to 166058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,310 DEBUG Processing 650/671 atomic regions from SNP 194739 to 195339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,317 DEBUG Processing 153/541 atomic regions from SNP 45643 to 46243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,320 DEBUG Processing 683/729 atomic regions from SNP 204870 to 205470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,371 DEBUG Processing 553/567 atomic regions from SNP 165758 to 166358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,537 DEBUG Processing 651/671 atomic regions from SNP 195039 to 195639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,545 DEBUG Processing 154/541 atomic regions from SNP 45943 to 46543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,564 DEBUG Processing 684/729 atomic regions from SNP 205170 to 205770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,590 DEBUG Processing 554/567 atomic regions from SNP 166058 to 166658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,771 DEBUG Processing 652/671 atomic regions from SNP 195339 to 195939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,784 DEBUG Processing 155/541 atomic regions from SNP 46243 to 46843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,812 DEBUG Processing 685/729 atomic regions from SNP 205470 to 206070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,824 DEBUG Processing 555/567 atomic regions from SNP 166358 to 166958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,013 DEBUG Processing 653/671 atomic regions from SNP 195639 to 196239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,015 DEBUG Processing 156/541 atomic regions from SNP 46543 to 47143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,068 DEBUG Processing 686/729 atomic regions from SNP 205770 to 206370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,075 DEBUG Processing 556/567 atomic regions from SNP 166658 to 167258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,237 DEBUG Processing 157/541 atomic regions from SNP 46843 to 47443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,250 DEBUG Processing 654/671 atomic regions from SNP 195939 to 196539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,316 DEBUG Processing 687/729 atomic regions from SNP 206070 to 206670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,321 DEBUG Processing 557/567 atomic regions from SNP 166958 to 167558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,464 DEBUG Processing 158/541 atomic regions from SNP 47143 to 47743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,502 DEBUG Processing 655/671 atomic regions from SNP 196239 to 196839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,561 DEBUG Processing 558/567 atomic regions from SNP 167258 to 167858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,603 DEBUG Processing 688/729 atomic regions from SNP 206370 to 206970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,689 DEBUG Processing 159/541 atomic regions from SNP 47443 to 48043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,704 DEBUG Subchromosome time: 189.8220386870671, subchromosome SNPs: 205801 2025-01-31 09:56:40,704 DEBUG Estimated BADs: [2.21, 4.42, 2.21, 0.74, 2.21, 4.42, 2.21, 1.11, 0.74, 2.21, 1.11] SNP counts: [34660, 2037, 4204, 1499, 79215, 1478, 4473, 15922, 7210, 47088, 8015] SNP IDs counts: [34660, 2037, 4204, 1499, 79215, 1478, 4473, 15922, 7210, 47088, 8015] Critical gap: 593970bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 23.40Mbp, 24.49Mbp, 26.83Mbp, 27.69Mbp, 73.20Mbp, 73.97Mbp, 76.52Mbp, 85.53Mbp, 89.75Mbp, 115.37Mbp, 120.42Mbp] 2025-01-31 09:56:40,704 DEBUG chr13 time: 189.82251590199303 s 2025-01-31 09:56:40,755 DEBUG Processing 656/671 atomic regions from SNP 196539 to 197139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,807 DEBUG Processing 559/567 atomic regions from SNP 167558 to 168158 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,844 DEBUG chr13: Fitting background model for 11 segments 2025-01-31 09:56:40,884 DEBUG Processing 689/729 atomic regions from SNP 206670 to 207270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,929 DEBUG Processing 160/541 atomic regions from SNP 47743 to 48343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,997 DEBUG Processing 657/671 atomic regions from SNP 196839 to 197439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,042 DEBUG Processing 560/567 atomic regions from SNP 167858 to 168458 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,149 DEBUG Processing 690/729 atomic regions from SNP 206970 to 207570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,155 DEBUG Processing 161/541 atomic regions from SNP 48043 to 48643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,220 DEBUG Processing 658/671 atomic regions from SNP 197139 to 197739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,282 DEBUG Processing 561/567 atomic regions from SNP 168158 to 168758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,386 DEBUG Processing 162/541 atomic regions from SNP 48343 to 48943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,413 DEBUG Processing 691/729 atomic regions from SNP 207270 to 207870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,447 DEBUG Processing 659/671 atomic regions from SNP 197439 to 198039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,531 DEBUG Processing 562/567 atomic regions from SNP 168458 to 169058 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,623 DEBUG Processing 163/541 atomic regions from SNP 48643 to 49243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,678 DEBUG Processing 660/671 atomic regions from SNP 197739 to 198339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,690 DEBUG Processing 692/729 atomic regions from SNP 207570 to 208170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,773 DEBUG Processing 563/567 atomic regions from SNP 168758 to 169358 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,858 DEBUG Processing 164/541 atomic regions from SNP 48943 to 49543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,911 DEBUG Processing 661/671 atomic regions from SNP 198039 to 198639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,961 DEBUG Processing 693/729 atomic regions from SNP 207870 to 208470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,018 DEBUG Processing 564/567 atomic regions from SNP 169058 to 169658 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,101 DEBUG Processing 165/541 atomic regions from SNP 49243 to 49843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,147 DEBUG Processing 662/671 atomic regions from SNP 198339 to 198939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,234 DEBUG Processing 694/729 atomic regions from SNP 208170 to 208770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,262 DEBUG Processing 565/567 atomic regions from SNP 169358 to 169958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,344 DEBUG Processing 166/541 atomic regions from SNP 49543 to 50143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,390 DEBUG Processing 663/671 atomic regions from SNP 198639 to 199239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,498 DEBUG Processing 566/567 atomic regions from SNP 169658 to 170258 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,504 DEBUG Processing 695/729 atomic regions from SNP 208470 to 209070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,593 DEBUG Processing 167/541 atomic regions from SNP 49843 to 50443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,619 DEBUG Processing 664/671 atomic regions from SNP 198939 to 199539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,731 DEBUG Processing 567/567 atomic regions from SNP 169958 to 170558 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,764 DEBUG Processing 696/729 atomic regions from SNP 208770 to 209370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,821 DEBUG Processing 168/541 atomic regions from SNP 50143 to 50743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,850 DEBUG Processing 665/671 atomic regions from SNP 199239 to 199839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,893 DEBUG Unique SNPs positions in subchromosome 1: 170559 2025-01-31 09:56:43,030 DEBUG Processing 697/729 atomic regions from SNP 209070 to 209670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,054 DEBUG Processing 169/541 atomic regions from SNP 50443 to 51043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,084 DEBUG Processing 666/671 atomic regions from SNP 199539 to 200139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,269 DEBUG Processing 170/541 atomic regions from SNP 50743 to 51343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,296 DEBUG Processing 698/729 atomic regions from SNP 209370 to 209970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,318 DEBUG Processing 667/671 atomic regions from SNP 199839 to 200439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,486 DEBUG Processing 171/541 atomic regions from SNP 51043 to 51643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,560 DEBUG Processing 668/671 atomic regions from SNP 200139 to 200739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,566 DEBUG Processing 699/729 atomic regions from SNP 209670 to 210270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,685 DEBUG Processing 172/541 atomic regions from SNP 51343 to 51943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,793 DEBUG Processing 669/671 atomic regions from SNP 200439 to 201039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,836 DEBUG Processing 700/729 atomic regions from SNP 209970 to 210570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,884 DEBUG Processing 173/541 atomic regions from SNP 51643 to 52243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,018 DEBUG Processing 670/671 atomic regions from SNP 200739 to 201339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,093 DEBUG Processing 174/541 atomic regions from SNP 51943 to 52543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,097 DEBUG Processing 701/729 atomic regions from SNP 210270 to 210870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,237 DEBUG Processing 671/671 atomic regions from SNP 201039 to 201639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,331 DEBUG Processing 175/541 atomic regions from SNP 52243 to 52843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,382 DEBUG Processing 702/729 atomic regions from SNP 210570 to 211170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,388 DEBUG Unique SNPs positions in subchromosome 1: 201640 2025-01-31 09:56:44,561 DEBUG Processing 176/541 atomic regions from SNP 52543 to 53143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,640 DEBUG Processing 703/729 atomic regions from SNP 210870 to 211470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,764 DEBUG Subchromosome time: 148.5609786779387, subchromosome SNPs: 170559 2025-01-31 09:56:44,764 DEBUG Estimated BADs: [2.07, 4.14, 2.07, 1.04, 0.52, 2.07, 0.69, 1.04, 4.14] SNP counts: [24849, 2345, 38769, 23394, 3593, 7497, 8694, 46205, 15213] SNP IDs counts: [24849, 2345, 38769, 23394, 3593, 7497, 8694, 46205, 15213] Critical gap: 528275bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.09Mbp], 17.04Mbp, 18.28Mbp, 39.37Mbp, 52.51Mbp, 54.63Mbp, 58.95Mbp, 64.04Mbp, 90.07Mbp, 98.21Mbp] 2025-01-31 09:56:44,765 DEBUG chr16 time: 148.56142814294435 s 2025-01-31 09:56:44,796 DEBUG Processing 177/541 atomic regions from SNP 52843 to 53443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,870 DEBUG chr16: Fitting background model for 9 segments 2025-01-31 09:56:44,892 DEBUG Processing 704/729 atomic regions from SNP 211170 to 211770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,050 DEBUG Processing 178/541 atomic regions from SNP 53143 to 53743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,157 DEBUG Processing 705/729 atomic regions from SNP 211470 to 212070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,287 DEBUG Processing 179/541 atomic regions from SNP 53443 to 54043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,421 DEBUG Processing 706/729 atomic regions from SNP 211770 to 212370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,505 DEBUG Processing 180/541 atomic regions from SNP 53743 to 54343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,672 DEBUG Processing 707/729 atomic regions from SNP 212070 to 212670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,740 DEBUG Processing 181/541 atomic regions from SNP 54043 to 54643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,935 DEBUG Processing 708/729 atomic regions from SNP 212370 to 212970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,983 DEBUG Processing 182/541 atomic regions from SNP 54343 to 54943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,202 DEBUG Processing 709/729 atomic regions from SNP 212670 to 213270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,227 DEBUG Processing 183/541 atomic regions from SNP 54643 to 55243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,431 DEBUG Subchromosome time: 183.4254643789027, subchromosome SNPs: 201640 2025-01-31 09:56:46,431 DEBUG Estimated BADs: [1.88, 0.94, 1.88, 0.94, 1.88, 3.77, 1.88, 0.63, 1.88, 3.77, 0.94, 1.88] SNP counts: [54119, 19810, 20698, 12588, 22235, 13188, 9881, 7816, 24314, 6581, 1804, 8606] SNP IDs counts: [54119, 19810, 20698, 12588, 22235, 13188, 9881, 7816, 24314, 6581, 1804, 8606] Critical gap: 598555bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 37.18Mbp, 48.70Mbp, 60.53Mbp, 67.79Mbp, 79.87Mbp, 86.89Mbp, 92.77Mbp, 97.28Mbp, 110.41Mbp, 113.96Mbp, 115.03Mbp, 120.13Mbp] 2025-01-31 09:56:46,432 DEBUG chr12 time: 183.4259181279922 s 2025-01-31 09:56:46,466 DEBUG Processing 710/729 atomic regions from SNP 212970 to 213570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,485 DEBUG Processing 184/541 atomic regions from SNP 54943 to 55543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,561 DEBUG chr12: Fitting background model for 12 segments 2025-01-31 09:56:46,717 DEBUG Processing 711/729 atomic regions from SNP 213270 to 213870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,731 DEBUG Processing 185/541 atomic regions from SNP 55243 to 55843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,984 DEBUG Processing 186/541 atomic regions from SNP 55543 to 56143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,987 DEBUG Processing 712/729 atomic regions from SNP 213570 to 214170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,227 DEBUG Processing 187/541 atomic regions from SNP 55843 to 56443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,246 DEBUG Processing 713/729 atomic regions from SNP 213870 to 214470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,482 DEBUG Processing 188/541 atomic regions from SNP 56143 to 56743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,519 DEBUG Processing 714/729 atomic regions from SNP 214170 to 214770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,741 DEBUG Processing 189/541 atomic regions from SNP 56443 to 57043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,795 DEBUG Processing 715/729 atomic regions from SNP 214470 to 215070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,970 DEBUG Processing 190/541 atomic regions from SNP 56743 to 57343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,059 DEBUG Processing 716/729 atomic regions from SNP 214770 to 215370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,200 DEBUG Processing 191/541 atomic regions from SNP 57043 to 57643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,319 DEBUG Processing 717/729 atomic regions from SNP 215070 to 215670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,417 DEBUG Processing 192/541 atomic regions from SNP 57343 to 57943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,592 DEBUG Processing 718/729 atomic regions from SNP 215370 to 215970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,637 DEBUG Processing 193/541 atomic regions from SNP 57643 to 58243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,852 DEBUG Processing 194/541 atomic regions from SNP 57943 to 58543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,867 DEBUG Processing 719/729 atomic regions from SNP 215670 to 216270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,066 DEBUG Processing 195/541 atomic regions from SNP 58243 to 58843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,127 DEBUG Processing 720/729 atomic regions from SNP 215970 to 216570 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,281 DEBUG Processing 196/541 atomic regions from SNP 58543 to 59143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,398 DEBUG Processing 721/729 atomic regions from SNP 216270 to 216870 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,494 DEBUG Processing 197/541 atomic regions from SNP 58843 to 59443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,670 DEBUG Processing 722/729 atomic regions from SNP 216570 to 217170 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,713 DEBUG Processing 198/541 atomic regions from SNP 59143 to 59743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,931 DEBUG Processing 199/541 atomic regions from SNP 59443 to 60043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,955 DEBUG Processing 723/729 atomic regions from SNP 216870 to 217470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,137 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:56:50,161 DEBUG Processing 200/541 atomic regions from SNP 59743 to 60343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,229 DEBUG Processing 724/729 atomic regions from SNP 217170 to 217770 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,386 DEBUG Processing 201/541 atomic regions from SNP 60043 to 60643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,510 DEBUG Processing 725/729 atomic regions from SNP 217470 to 218070 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,603 DEBUG Processing 202/541 atomic regions from SNP 60343 to 60943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,763 DEBUG Processing 726/729 atomic regions from SNP 217770 to 218370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,821 DEBUG Processing 203/541 atomic regions from SNP 60643 to 61243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,019 DEBUG Processing 727/729 atomic regions from SNP 218070 to 218670 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,042 DEBUG Processing 204/541 atomic regions from SNP 60943 to 61543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,275 DEBUG Processing 205/541 atomic regions from SNP 61243 to 61843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,281 DEBUG Processing 728/729 atomic regions from SNP 218370 to 218970 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,505 DEBUG Processing 206/541 atomic regions from SNP 61543 to 62143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,547 DEBUG Processing 729/729 atomic regions from SNP 218670 to 219270 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,698 DEBUG Unique SNPs positions in subchromosome 1: 219271 2025-01-31 09:56:51,720 DEBUG Processing 207/541 atomic regions from SNP 61843 to 62443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,928 DEBUG Processing 208/541 atomic regions from SNP 62143 to 62743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,142 DEBUG Processing 209/541 atomic regions from SNP 62443 to 63043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,363 DEBUG Processing 210/541 atomic regions from SNP 62743 to 63343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,570 DEBUG Processing 211/541 atomic regions from SNP 63043 to 63643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,783 DEBUG Processing 212/541 atomic regions from SNP 63343 to 63943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,990 DEBUG Processing 213/541 atomic regions from SNP 63643 to 64243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,194 DEBUG Processing 214/541 atomic regions from SNP 63943 to 64543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,393 DEBUG Processing 215/541 atomic regions from SNP 64243 to 64843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,560 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:56:53,590 DEBUG Processing 216/541 atomic regions from SNP 64543 to 65143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,798 DEBUG Processing 217/541 atomic regions from SNP 64843 to 65443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,994 DEBUG Processing 218/541 atomic regions from SNP 65143 to 65743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,084 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:56:54,195 DEBUG Processing 219/541 atomic regions from SNP 65443 to 66043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,399 DEBUG Processing 220/541 atomic regions from SNP 65743 to 66343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,598 DEBUG Processing 221/541 atomic regions from SNP 66043 to 66643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,814 DEBUG Processing 222/541 atomic regions from SNP 66343 to 66943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,027 DEBUG Processing 223/541 atomic regions from SNP 66643 to 67243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,238 DEBUG Processing 224/541 atomic regions from SNP 66943 to 67543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,445 DEBUG Processing 225/541 atomic regions from SNP 67243 to 67843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,645 DEBUG Processing 226/541 atomic regions from SNP 67543 to 68143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,849 DEBUG Processing 227/541 atomic regions from SNP 67843 to 68443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,051 DEBUG Processing 228/541 atomic regions from SNP 68143 to 68743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,245 DEBUG Processing 229/541 atomic regions from SNP 68443 to 69043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,449 DEBUG Processing 230/541 atomic regions from SNP 68743 to 69343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,645 DEBUG Processing 231/541 atomic regions from SNP 69043 to 69643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,844 DEBUG Processing 232/541 atomic regions from SNP 69343 to 69943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,921 DEBUG Subchromosome time: 214.1604995059315, subchromosome SNPs: 219271 2025-01-31 09:56:56,921 DEBUG Estimated BADs: [24.54, 4.91, 1.23, 0.82, 2.45, 0.82, 2.45, 0.82, 2.45, 4.91, 2.45, 0.82, 2.45, 4.91, 2.45, 0.82, 2.45, 4.91] SNP counts: [143, 6576, 10515, 10241, 11444, 6009, 15069, 12329, 47307, 2846, 38075, 3910, 7206, 10214, 16477, 2425, 6642, 11843] SNP IDs counts: [143, 6576, 10515, 10241, 11444, 6009, 15069, 12329, 47307, 2846, 38075, 3910, 7206, 10214, 16477, 2425, 6642, 11843] Critical gap: 583139bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.19Mbp, 6.69Mbp, 12.69Mbp, 18.65Mbp, 24.88Mbp, 28.37Mbp, 36.63Mbp, 43.49Mbp, 69.01Mbp, 70.50Mbp, 90.84Mbp, 93.03Mbp, 96.82Mbp, 102.19Mbp, 110.93Mbp, 112.23Mbp, 115.75Mbp, 122.08Mbp] 2025-01-31 09:56:56,921 DEBUG chr11 time: 214.16099886700977 s 2025-01-31 09:56:57,050 DEBUG Processing 233/541 atomic regions from SNP 69643 to 70243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,064 DEBUG chr11: Fitting background model for 18 segments 2025-01-31 09:56:57,261 DEBUG Processing 234/541 atomic regions from SNP 69943 to 70543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,482 DEBUG Processing 235/541 atomic regions from SNP 70243 to 70843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,700 DEBUG Processing 236/541 atomic regions from SNP 70543 to 71143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,914 DEBUG Processing 237/541 atomic regions from SNP 70843 to 71443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,120 DEBUG Processing 238/541 atomic regions from SNP 71143 to 71743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,325 DEBUG Processing 239/541 atomic regions from SNP 71443 to 72043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,542 DEBUG Processing 240/541 atomic regions from SNP 71743 to 72343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,640 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:56:58,641 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:56:58,747 DEBUG Processing 241/541 atomic regions from SNP 72043 to 72643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,953 DEBUG Processing 242/541 atomic regions from SNP 72343 to 72943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,167 DEBUG Processing 243/541 atomic regions from SNP 72643 to 73243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,410 DEBUG Processing 244/541 atomic regions from SNP 72943 to 73543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,654 DEBUG Processing 245/541 atomic regions from SNP 73243 to 73843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,900 DEBUG Processing 246/541 atomic regions from SNP 73543 to 74143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,133 DEBUG Processing 247/541 atomic regions from SNP 73843 to 74443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,336 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:57:00,337 DEBUG chr19: Signal quantile: 0.995. signal threshold: 16. Best RMSEA: 0.037 2025-01-31 09:57:00,361 DEBUG Processing 248/541 atomic regions from SNP 74143 to 74743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,455 DEBUG chrY total SNP count: 157 2025-01-31 09:57:00,455 DEBUG chrY length: 91744698 2025-01-31 09:57:00,456 DEBUG ----------------------------------------- 2025-01-31 09:57:00,456 INFO Processing SNPs in chrY 2025-01-31 09:57:00,457 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 13), (13, 37), (37, 48), (48, 60), (60, 67), (67, 78), (78, 84), (84, 87), (87, 95), (95, 103), (103, 104), (104, 105), (105, 106), (106, 113), (113, 115), (115, 157)] 2025-01-31 09:57:00,458 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [13, 24, 11, 12, 7, 11, 6, 3, 8, 8, 1, 1, 1, 7, 2, 42] SNP IDs counts: [13, 24, 11, 12, 7, 11, 6, 3, 8, 8, 1, 1, 1, 7, 2, 42] Critical gap: 16367bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.72Mbp], 0.73Mbp[0.15Mbp], 0.89Mbp[0.06Mbp], 0.96Mbp[0.24Mbp], 1.20Mbp[0.68Mbp], 1.89Mbp[0.63Mbp], 2.52Mbp[1.63Mbp], 4.15Mbp[1.39Mbp], 5.55Mbp[4.26Mbp], 9.81Mbp[0.89Mbp], 10.71Mbp[12.01Mbp], 22.72Mbp[13.26Mbp], 35.98Mbp[4.04Mbp], 40.02Mbp[1.18Mbp], 41.21Mbp[2.72Mbp], 43.93Mbp[46.79Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:57:00,458 DEBUG chrY time: 0.0019738730043172836 s 2025-01-31 09:57:00,576 DEBUG Processing 249/541 atomic regions from SNP 74443 to 75043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,793 DEBUG Processing 250/541 atomic regions from SNP 74743 to 75343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,022 DEBUG Processing 251/541 atomic regions from SNP 75043 to 75643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,253 DEBUG Processing 252/541 atomic regions from SNP 75343 to 75943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,472 DEBUG Processing 253/541 atomic regions from SNP 75643 to 76243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,518 DEBUG chr19 total SNP count: 106207 2025-01-31 09:57:01,518 DEBUG chr19 length: 61431566 2025-01-31 09:57:01,518 DEBUG ----------------------------------------- 2025-01-31 09:57:01,518 INFO Processing SNPs in chr19 2025-01-31 09:57:01,628 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 106207)] 2025-01-31 09:57:01,694 DEBUG Processing 254/541 atomic regions from SNP 75943 to 76543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,702 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:01,914 DEBUG Processing 255/541 atomic regions from SNP 76243 to 76843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,137 DEBUG Processing 256/541 atomic regions from SNP 76543 to 77143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,384 DEBUG Processing 257/541 atomic regions from SNP 76843 to 77443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,609 DEBUG Processing 258/541 atomic regions from SNP 77143 to 77743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,840 DEBUG Processing 259/541 atomic regions from SNP 77443 to 78043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,072 DEBUG Processing 260/541 atomic regions from SNP 77743 to 78343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,277 DEBUG Processing 261/541 atomic regions from SNP 78043 to 78643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,487 DEBUG Processing 262/541 atomic regions from SNP 78343 to 78943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,493 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:57:03,494 WARNING chr18: Best RMSEA: 0.055. Chromosome fit might be poorly approximated. 2025-01-31 09:57:03,494 DEBUG chr18: Signal quantile: 0.994. signal threshold: 11. Best RMSEA: 0.055 2025-01-31 09:57:03,689 DEBUG Processing 263/541 atomic regions from SNP 78643 to 79243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,890 DEBUG Processing 264/541 atomic regions from SNP 78943 to 79543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,104 DEBUG Processing 265/541 atomic regions from SNP 79243 to 79843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,309 DEBUG Processing 266/541 atomic regions from SNP 79543 to 80143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,523 DEBUG Processing 267/541 atomic regions from SNP 79843 to 80443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,728 DEBUG Processing 268/541 atomic regions from SNP 80143 to 80743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,927 DEBUG Processing 269/541 atomic regions from SNP 80443 to 81043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,121 DEBUG Processing 270/541 atomic regions from SNP 80743 to 81343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,149 DEBUG chr18 total SNP count: 157908 2025-01-31 09:57:05,149 DEBUG chr18 length: 90702639 2025-01-31 09:57:05,149 DEBUG ----------------------------------------- 2025-01-31 09:57:05,149 INFO Processing SNPs in chr18 2025-01-31 09:57:05,309 DEBUG Processing 271/541 atomic regions from SNP 81043 to 81643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,313 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 157908)] 2025-01-31 09:57:05,423 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:05,505 DEBUG Processing 272/541 atomic regions from SNP 81343 to 81943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,707 DEBUG Processing 273/541 atomic regions from SNP 81643 to 82243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,908 DEBUG Processing 274/541 atomic regions from SNP 81943 to 82543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,117 DEBUG Processing 275/541 atomic regions from SNP 82243 to 82843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,318 DEBUG Processing 276/541 atomic regions from SNP 82543 to 83143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,518 DEBUG Processing 277/541 atomic regions from SNP 82843 to 83443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,713 DEBUG Processing 278/541 atomic regions from SNP 83143 to 83743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,912 DEBUG Processing 279/541 atomic regions from SNP 83443 to 84043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,108 DEBUG Processing 280/541 atomic regions from SNP 83743 to 84343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,299 DEBUG Processing 281/541 atomic regions from SNP 84043 to 84643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,491 DEBUG Processing 282/541 atomic regions from SNP 84343 to 84943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,689 DEBUG Processing 283/541 atomic regions from SNP 84643 to 85243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,891 DEBUG Processing 284/541 atomic regions from SNP 84943 to 85543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,087 DEBUG Processing 285/541 atomic regions from SNP 85243 to 85843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,275 DEBUG Processing 286/541 atomic regions from SNP 85543 to 86143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,469 DEBUG Processing 287/541 atomic regions from SNP 85843 to 86443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,664 DEBUG Processing 288/541 atomic regions from SNP 86143 to 86743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,863 DEBUG Processing 289/541 atomic regions from SNP 86443 to 87043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,055 DEBUG Processing 290/541 atomic regions from SNP 86743 to 87343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,246 DEBUG Processing 291/541 atomic regions from SNP 87043 to 87643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,441 DEBUG Processing 292/541 atomic regions from SNP 87343 to 87943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,631 DEBUG Processing 293/541 atomic regions from SNP 87643 to 88243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,825 DEBUG Processing 294/541 atomic regions from SNP 87943 to 88543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,023 DEBUG Processing 295/541 atomic regions from SNP 88243 to 88843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,223 DEBUG Processing 296/541 atomic regions from SNP 88543 to 89143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,420 DEBUG Processing 297/541 atomic regions from SNP 88843 to 89443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,629 DEBUG Processing 298/541 atomic regions from SNP 89143 to 89743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,828 DEBUG Processing 299/541 atomic regions from SNP 89443 to 90043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,026 DEBUG Processing 300/541 atomic regions from SNP 89743 to 90343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,221 DEBUG Processing 301/541 atomic regions from SNP 90043 to 90643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,416 DEBUG Processing 302/541 atomic regions from SNP 90343 to 90943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,615 DEBUG Processing 303/541 atomic regions from SNP 90643 to 91243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,814 DEBUG Processing 304/541 atomic regions from SNP 90943 to 91543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,010 DEBUG Processing 305/541 atomic regions from SNP 91243 to 91843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,208 DEBUG Processing 306/541 atomic regions from SNP 91543 to 92143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,429 DEBUG Processing 307/541 atomic regions from SNP 91843 to 92443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,663 DEBUG Processing 308/541 atomic regions from SNP 92143 to 92743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,892 DEBUG Processing 309/541 atomic regions from SNP 92443 to 93043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,118 DEBUG Processing 310/541 atomic regions from SNP 92743 to 93343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,345 DEBUG Processing 311/541 atomic regions from SNP 93043 to 93643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,576 DEBUG Processing 312/541 atomic regions from SNP 93343 to 93943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,806 DEBUG Processing 313/541 atomic regions from SNP 93643 to 94243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,027 DEBUG Processing 314/541 atomic regions from SNP 93943 to 94543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,239 DEBUG Processing 315/541 atomic regions from SNP 94243 to 94843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,435 DEBUG Processing 316/541 atomic regions from SNP 94543 to 95143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,626 DEBUG Processing 317/541 atomic regions from SNP 94843 to 95443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,774 DEBUG Segmenting atomic regions: 2025-01-31 09:57:14,817 DEBUG Processing 318/541 atomic regions from SNP 95143 to 95743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,824 DEBUG Processing 1/353 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,005 DEBUG Processing 2/353 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,014 DEBUG Processing 319/541 atomic regions from SNP 95443 to 96043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,191 DEBUG Processing 3/353 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,213 DEBUG Processing 320/541 atomic regions from SNP 95743 to 96343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,378 DEBUG Processing 4/353 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,413 DEBUG Processing 321/541 atomic regions from SNP 96043 to 96643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,562 DEBUG Processing 5/353 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,609 DEBUG Processing 322/541 atomic regions from SNP 96343 to 96943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,756 DEBUG Processing 6/353 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,814 DEBUG Processing 323/541 atomic regions from SNP 96643 to 97243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,954 DEBUG Processing 7/353 atomic regions from SNP 1806 to 2406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,009 DEBUG Processing 324/541 atomic regions from SNP 96943 to 97543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,144 DEBUG Processing 8/353 atomic regions from SNP 2106 to 2706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,205 DEBUG Processing 325/541 atomic regions from SNP 97243 to 97843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,333 DEBUG Processing 9/353 atomic regions from SNP 2406 to 3006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,400 DEBUG Processing 326/541 atomic regions from SNP 97543 to 98143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,523 DEBUG Processing 10/353 atomic regions from SNP 2706 to 3306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,593 DEBUG Processing 327/541 atomic regions from SNP 97843 to 98443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,706 DEBUG Processing 11/353 atomic regions from SNP 3006 to 3606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,784 DEBUG Processing 328/541 atomic regions from SNP 98143 to 98743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,896 DEBUG Processing 12/353 atomic regions from SNP 3306 to 3906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,975 DEBUG Processing 329/541 atomic regions from SNP 98443 to 99043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,093 DEBUG Processing 13/353 atomic regions from SNP 3606 to 4206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,166 DEBUG Processing 330/541 atomic regions from SNP 98743 to 99343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,279 DEBUG Processing 14/353 atomic regions from SNP 3906 to 4506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,358 DEBUG Processing 331/541 atomic regions from SNP 99043 to 99643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,469 DEBUG Processing 15/353 atomic regions from SNP 4206 to 4806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,554 DEBUG Processing 332/541 atomic regions from SNP 99343 to 99943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,668 DEBUG Processing 16/353 atomic regions from SNP 4506 to 5106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,752 DEBUG Processing 333/541 atomic regions from SNP 99643 to 100243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,862 DEBUG Processing 17/353 atomic regions from SNP 4806 to 5406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,952 DEBUG Processing 334/541 atomic regions from SNP 99943 to 100543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,055 DEBUG Processing 18/353 atomic regions from SNP 5106 to 5706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,152 DEBUG Processing 335/541 atomic regions from SNP 100243 to 100843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,243 DEBUG Processing 19/353 atomic regions from SNP 5406 to 6006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,357 DEBUG Processing 336/541 atomic regions from SNP 100543 to 101143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,434 DEBUG Processing 20/353 atomic regions from SNP 5706 to 6306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,561 DEBUG Processing 337/541 atomic regions from SNP 100843 to 101443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,628 DEBUG Processing 21/353 atomic regions from SNP 6006 to 6606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,765 DEBUG Processing 338/541 atomic regions from SNP 101143 to 101743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,818 DEBUG Processing 22/353 atomic regions from SNP 6306 to 6906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,963 DEBUG Processing 339/541 atomic regions from SNP 101443 to 102043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,003 DEBUG Processing 23/353 atomic regions from SNP 6606 to 7206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,165 DEBUG Processing 340/541 atomic regions from SNP 101743 to 102343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,205 DEBUG Processing 24/353 atomic regions from SNP 6906 to 7506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,369 DEBUG Processing 341/541 atomic regions from SNP 102043 to 102643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,412 DEBUG Processing 25/353 atomic regions from SNP 7206 to 7806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,568 DEBUG Processing 342/541 atomic regions from SNP 102343 to 102943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,611 DEBUG Processing 26/353 atomic regions from SNP 7506 to 8106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,766 DEBUG Processing 343/541 atomic regions from SNP 102643 to 103243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,806 DEBUG Processing 27/353 atomic regions from SNP 7806 to 8406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,965 DEBUG Processing 344/541 atomic regions from SNP 102943 to 103543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,991 DEBUG Processing 28/353 atomic regions from SNP 8106 to 8706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,162 DEBUG Processing 345/541 atomic regions from SNP 103243 to 103843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,182 DEBUG Processing 29/353 atomic regions from SNP 8406 to 9006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,356 DEBUG Processing 30/353 atomic regions from SNP 8706 to 9306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,366 DEBUG Processing 346/541 atomic regions from SNP 103543 to 104143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,533 DEBUG Processing 31/353 atomic regions from SNP 9006 to 9606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,573 DEBUG Processing 347/541 atomic regions from SNP 103843 to 104443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,706 DEBUG Processing 32/353 atomic regions from SNP 9306 to 9906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,775 DEBUG Processing 348/541 atomic regions from SNP 104143 to 104743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,886 DEBUG Processing 33/353 atomic regions from SNP 9606 to 10206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,983 DEBUG Processing 349/541 atomic regions from SNP 104443 to 105043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,083 DEBUG Processing 34/353 atomic regions from SNP 9906 to 10506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,186 DEBUG Processing 350/541 atomic regions from SNP 104743 to 105343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,284 DEBUG Processing 35/353 atomic regions from SNP 10206 to 10806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,392 DEBUG Processing 351/541 atomic regions from SNP 105043 to 105643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,486 DEBUG Processing 36/353 atomic regions from SNP 10506 to 11106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,598 DEBUG Processing 352/541 atomic regions from SNP 105343 to 105943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,674 DEBUG Processing 37/353 atomic regions from SNP 10806 to 11406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,804 DEBUG Processing 353/541 atomic regions from SNP 105643 to 106243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,854 DEBUG Processing 38/353 atomic regions from SNP 11106 to 11706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,024 DEBUG Processing 354/541 atomic regions from SNP 105943 to 106543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,049 DEBUG Processing 39/353 atomic regions from SNP 11406 to 12006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,230 DEBUG Processing 355/541 atomic regions from SNP 106243 to 106843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,248 DEBUG Processing 40/353 atomic regions from SNP 11706 to 12306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,460 DEBUG Processing 41/353 atomic regions from SNP 12006 to 12606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,462 DEBUG Processing 356/541 atomic regions from SNP 106543 to 107143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,666 DEBUG Processing 42/353 atomic regions from SNP 12306 to 12906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,673 DEBUG Processing 357/541 atomic regions from SNP 106843 to 107443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,864 DEBUG Processing 43/353 atomic regions from SNP 12606 to 13206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,875 DEBUG Processing 358/541 atomic regions from SNP 107143 to 107743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,052 DEBUG Processing 44/353 atomic regions from SNP 12906 to 13506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,076 DEBUG Processing 359/541 atomic regions from SNP 107443 to 108043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,250 DEBUG Processing 45/353 atomic regions from SNP 13206 to 13806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,279 DEBUG Processing 360/541 atomic regions from SNP 107743 to 108343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,449 DEBUG Processing 46/353 atomic regions from SNP 13506 to 14106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,486 DEBUG Processing 361/541 atomic regions from SNP 108043 to 108643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,629 DEBUG Processing 47/353 atomic regions from SNP 13806 to 14406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,699 DEBUG Processing 362/541 atomic regions from SNP 108343 to 108943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,808 DEBUG Processing 48/353 atomic regions from SNP 14106 to 14706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,910 DEBUG Processing 363/541 atomic regions from SNP 108643 to 109243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,989 DEBUG Processing 49/353 atomic regions from SNP 14406 to 15006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,117 DEBUG Processing 364/541 atomic regions from SNP 108943 to 109543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,173 DEBUG Processing 50/353 atomic regions from SNP 14706 to 15306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,324 DEBUG Processing 365/541 atomic regions from SNP 109243 to 109843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,359 DEBUG Processing 51/353 atomic regions from SNP 15006 to 15606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,536 DEBUG Processing 366/541 atomic regions from SNP 109543 to 110143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,537 DEBUG Processing 52/353 atomic regions from SNP 15306 to 15906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,710 DEBUG Processing 53/353 atomic regions from SNP 15606 to 16206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,753 DEBUG Processing 367/541 atomic regions from SNP 109843 to 110443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,872 DEBUG Segmenting atomic regions: 2025-01-31 09:57:24,890 DEBUG Processing 54/353 atomic regions from SNP 15906 to 16506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,944 DEBUG Processing 1/525 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,975 DEBUG Processing 368/541 atomic regions from SNP 110143 to 110743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,079 DEBUG Processing 55/353 atomic regions from SNP 16206 to 16806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,153 DEBUG Processing 2/525 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,218 DEBUG Processing 369/541 atomic regions from SNP 110443 to 111043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,262 DEBUG Processing 56/353 atomic regions from SNP 16506 to 17106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,365 DEBUG Processing 3/525 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,434 DEBUG Processing 370/541 atomic regions from SNP 110743 to 111343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,447 DEBUG Processing 57/353 atomic regions from SNP 16806 to 17406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,575 DEBUG Processing 4/525 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,634 DEBUG Processing 58/353 atomic regions from SNP 17106 to 17706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,652 DEBUG Processing 371/541 atomic regions from SNP 111043 to 111643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,779 DEBUG Processing 5/525 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,823 DEBUG Processing 59/353 atomic regions from SNP 17406 to 18006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,873 DEBUG Processing 372/541 atomic regions from SNP 111343 to 111943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,983 DEBUG Processing 6/525 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,011 DEBUG Processing 60/353 atomic regions from SNP 17706 to 18306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,093 DEBUG Processing 373/541 atomic regions from SNP 111643 to 112243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,192 DEBUG Processing 61/353 atomic regions from SNP 18006 to 18606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,192 DEBUG Processing 7/525 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,314 DEBUG Processing 374/541 atomic regions from SNP 111943 to 112543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,384 DEBUG Processing 62/353 atomic regions from SNP 18306 to 18906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,405 DEBUG Processing 8/525 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,532 DEBUG Processing 375/541 atomic regions from SNP 112243 to 112843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,575 DEBUG Processing 63/353 atomic regions from SNP 18606 to 19206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,629 DEBUG Processing 9/525 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,744 DEBUG Processing 376/541 atomic regions from SNP 112543 to 113143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,766 DEBUG Processing 64/353 atomic regions from SNP 18906 to 19506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,863 DEBUG Processing 10/525 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,954 DEBUG Processing 65/353 atomic regions from SNP 19206 to 19806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,976 DEBUG Processing 377/541 atomic regions from SNP 112843 to 113443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,103 DEBUG Processing 11/525 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,142 DEBUG Processing 66/353 atomic regions from SNP 19506 to 20106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,193 DEBUG Processing 378/541 atomic regions from SNP 113143 to 113743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,333 DEBUG Processing 12/525 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,335 DEBUG Processing 67/353 atomic regions from SNP 19806 to 20406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,410 DEBUG Processing 379/541 atomic regions from SNP 113443 to 114043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,522 DEBUG Processing 68/353 atomic regions from SNP 20106 to 20706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,558 DEBUG Processing 13/525 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,629 DEBUG Processing 380/541 atomic regions from SNP 113743 to 114343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,707 DEBUG Processing 69/353 atomic regions from SNP 20406 to 21006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,778 DEBUG Processing 14/525 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,854 DEBUG Processing 381/541 atomic regions from SNP 114043 to 114643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,887 DEBUG Processing 70/353 atomic regions from SNP 20706 to 21306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,998 DEBUG Processing 15/525 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,073 DEBUG Processing 382/541 atomic regions from SNP 114343 to 114943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,079 DEBUG Processing 71/353 atomic regions from SNP 21006 to 21606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,207 DEBUG Processing 16/525 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,266 DEBUG Processing 72/353 atomic regions from SNP 21306 to 21906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,293 DEBUG Processing 383/541 atomic regions from SNP 114643 to 115243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,424 DEBUG Processing 17/525 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,452 DEBUG Processing 73/353 atomic regions from SNP 21606 to 22206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,516 DEBUG Processing 384/541 atomic regions from SNP 114943 to 115543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,638 DEBUG Processing 74/353 atomic regions from SNP 21906 to 22506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,642 DEBUG Processing 18/525 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,734 DEBUG Processing 385/541 atomic regions from SNP 115243 to 115843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,827 DEBUG Processing 75/353 atomic regions from SNP 22206 to 22806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,854 DEBUG Processing 19/525 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,952 DEBUG Processing 386/541 atomic regions from SNP 115543 to 116143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,016 DEBUG Processing 76/353 atomic regions from SNP 22506 to 23106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,065 DEBUG Processing 20/525 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,169 DEBUG Processing 387/541 atomic regions from SNP 115843 to 116443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,207 DEBUG Processing 77/353 atomic regions from SNP 22806 to 23406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,272 DEBUG Processing 21/525 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,386 DEBUG Processing 388/541 atomic regions from SNP 116143 to 116743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,400 DEBUG Processing 78/353 atomic regions from SNP 23106 to 23706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,479 DEBUG Processing 22/525 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,586 DEBUG Processing 79/353 atomic regions from SNP 23406 to 24006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,600 DEBUG Processing 389/541 atomic regions from SNP 116443 to 117043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,681 DEBUG Processing 23/525 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,770 DEBUG Processing 80/353 atomic regions from SNP 23706 to 24306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,819 DEBUG Processing 390/541 atomic regions from SNP 116743 to 117343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,891 DEBUG Processing 24/525 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,953 DEBUG Processing 81/353 atomic regions from SNP 24006 to 24606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,039 DEBUG Processing 391/541 atomic regions from SNP 117043 to 117643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,099 DEBUG Processing 25/525 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,130 DEBUG Processing 82/353 atomic regions from SNP 24306 to 24906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,249 DEBUG Processing 392/541 atomic regions from SNP 117343 to 117943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,305 DEBUG Processing 26/525 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,314 DEBUG Processing 83/353 atomic regions from SNP 24606 to 25206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,462 DEBUG Processing 393/541 atomic regions from SNP 117643 to 118243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,505 DEBUG Processing 84/353 atomic regions from SNP 24906 to 25506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,518 DEBUG Processing 27/525 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,678 DEBUG Processing 394/541 atomic regions from SNP 117943 to 118543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,692 DEBUG Processing 85/353 atomic regions from SNP 25206 to 25806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,736 DEBUG Processing 28/525 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,876 DEBUG Processing 86/353 atomic regions from SNP 25506 to 26106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,893 DEBUG Processing 395/541 atomic regions from SNP 118243 to 118843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,942 DEBUG Processing 29/525 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,052 DEBUG Processing 87/353 atomic regions from SNP 25806 to 26406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,108 DEBUG Processing 396/541 atomic regions from SNP 118543 to 119143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,151 DEBUG Processing 30/525 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,228 DEBUG Processing 88/353 atomic regions from SNP 26106 to 26706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,326 DEBUG Processing 397/541 atomic regions from SNP 118843 to 119443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,358 DEBUG Processing 31/525 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,406 DEBUG Processing 89/353 atomic regions from SNP 26406 to 27006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,546 DEBUG Processing 398/541 atomic regions from SNP 119143 to 119743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,564 DEBUG Processing 32/525 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,590 DEBUG Processing 90/353 atomic regions from SNP 26706 to 27306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,771 DEBUG Processing 33/525 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,773 DEBUG Processing 91/353 atomic regions from SNP 27006 to 27606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,776 DEBUG Processing 399/541 atomic regions from SNP 119443 to 120043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,962 DEBUG Processing 92/353 atomic regions from SNP 27306 to 27906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,986 DEBUG Processing 34/525 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,004 DEBUG Processing 400/541 atomic regions from SNP 119743 to 120343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,143 DEBUG Processing 93/353 atomic regions from SNP 27606 to 28206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,191 DEBUG Processing 35/525 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,225 DEBUG Processing 401/541 atomic regions from SNP 120043 to 120643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,313 DEBUG Processing 94/353 atomic regions from SNP 27906 to 28506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,390 DEBUG Processing 36/525 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,449 DEBUG Processing 402/541 atomic regions from SNP 120343 to 120943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,492 DEBUG Processing 95/353 atomic regions from SNP 28206 to 28806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,586 DEBUG Processing 37/525 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,672 DEBUG Processing 403/541 atomic regions from SNP 120643 to 121243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,687 DEBUG Processing 96/353 atomic regions from SNP 28506 to 29106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,790 DEBUG Processing 38/525 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,871 DEBUG Processing 97/353 atomic regions from SNP 28806 to 29406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,885 DEBUG Processing 404/541 atomic regions from SNP 120943 to 121543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,987 DEBUG Processing 39/525 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,050 DEBUG Processing 98/353 atomic regions from SNP 29106 to 29706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,095 DEBUG Processing 405/541 atomic regions from SNP 121243 to 121843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,193 DEBUG Processing 40/525 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,236 DEBUG Processing 99/353 atomic regions from SNP 29406 to 30006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,315 DEBUG Processing 406/541 atomic regions from SNP 121543 to 122143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,399 DEBUG Processing 41/525 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,416 DEBUG Processing 100/353 atomic regions from SNP 29706 to 30306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,529 DEBUG Processing 407/541 atomic regions from SNP 121843 to 122443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,597 DEBUG Processing 101/353 atomic regions from SNP 30006 to 30606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,603 DEBUG Processing 42/525 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,739 DEBUG Processing 408/541 atomic regions from SNP 122143 to 122743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,780 DEBUG Processing 102/353 atomic regions from SNP 30306 to 30906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,810 DEBUG Processing 43/525 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,952 DEBUG Processing 409/541 atomic regions from SNP 122443 to 123043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,962 DEBUG Processing 103/353 atomic regions from SNP 30606 to 31206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,017 DEBUG Processing 44/525 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,149 DEBUG Processing 104/353 atomic regions from SNP 30906 to 31506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,169 DEBUG Processing 410/541 atomic regions from SNP 122743 to 123343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,223 DEBUG Processing 45/525 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,333 DEBUG Processing 105/353 atomic regions from SNP 31206 to 31806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,390 DEBUG Processing 411/541 atomic regions from SNP 123043 to 123643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,432 DEBUG Processing 46/525 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,512 DEBUG Processing 106/353 atomic regions from SNP 31506 to 32106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,611 DEBUG Processing 412/541 atomic regions from SNP 123343 to 123943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,643 DEBUG Processing 47/525 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,685 DEBUG Processing 107/353 atomic regions from SNP 31806 to 32406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,831 DEBUG Processing 413/541 atomic regions from SNP 123643 to 124243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,855 DEBUG Processing 48/525 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,868 DEBUG Processing 108/353 atomic regions from SNP 32106 to 32706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,054 DEBUG Processing 109/353 atomic regions from SNP 32406 to 33006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,064 DEBUG Processing 49/525 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,065 DEBUG Processing 414/541 atomic regions from SNP 123943 to 124543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,241 DEBUG Processing 110/353 atomic regions from SNP 32706 to 33306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,275 DEBUG Processing 50/525 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,282 DEBUG Processing 415/541 atomic regions from SNP 124243 to 124843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,425 DEBUG Processing 111/353 atomic regions from SNP 33006 to 33606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,487 DEBUG Processing 51/525 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,500 DEBUG Processing 416/541 atomic regions from SNP 124543 to 125143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,606 DEBUG Processing 112/353 atomic regions from SNP 33306 to 33906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,701 DEBUG Processing 52/525 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,721 DEBUG Processing 417/541 atomic regions from SNP 124843 to 125443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,788 DEBUG Processing 113/353 atomic regions from SNP 33606 to 34206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,914 DEBUG Processing 53/525 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,942 DEBUG Processing 418/541 atomic regions from SNP 125143 to 125743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,969 DEBUG Processing 114/353 atomic regions from SNP 33906 to 34506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,131 DEBUG Processing 54/525 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,160 DEBUG Processing 115/353 atomic regions from SNP 34206 to 34806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,173 DEBUG Processing 419/541 atomic regions from SNP 125443 to 126043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,351 DEBUG Processing 55/525 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,356 DEBUG Processing 116/353 atomic regions from SNP 34506 to 35106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,399 DEBUG Processing 420/541 atomic regions from SNP 125743 to 126343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,545 DEBUG Processing 117/353 atomic regions from SNP 34806 to 35406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,564 DEBUG Processing 56/525 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,627 DEBUG Processing 421/541 atomic regions from SNP 126043 to 126643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,732 DEBUG Processing 118/353 atomic regions from SNP 35106 to 35706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,776 DEBUG Processing 57/525 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,857 DEBUG Processing 422/541 atomic regions from SNP 126343 to 126943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,933 DEBUG Processing 119/353 atomic regions from SNP 35406 to 36006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,991 DEBUG Processing 58/525 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,068 DEBUG Processing 423/541 atomic regions from SNP 126643 to 127243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,125 DEBUG Processing 120/353 atomic regions from SNP 35706 to 36306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,199 DEBUG Processing 59/525 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,276 DEBUG Processing 424/541 atomic regions from SNP 126943 to 127543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,311 DEBUG Processing 121/353 atomic regions from SNP 36006 to 36606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,411 DEBUG Processing 60/525 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,485 DEBUG Processing 425/541 atomic regions from SNP 127243 to 127843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,489 DEBUG Processing 122/353 atomic regions from SNP 36306 to 36906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,619 DEBUG Processing 61/525 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,672 DEBUG Processing 123/353 atomic regions from SNP 36606 to 37206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,697 DEBUG Processing 426/541 atomic regions from SNP 127543 to 128143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,827 DEBUG Processing 62/525 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,857 DEBUG Processing 124/353 atomic regions from SNP 36906 to 37506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,913 DEBUG Processing 427/541 atomic regions from SNP 127843 to 128443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,035 DEBUG Processing 63/525 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,041 DEBUG Processing 125/353 atomic regions from SNP 37206 to 37806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,128 DEBUG Processing 428/541 atomic regions from SNP 128143 to 128743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,223 DEBUG Processing 126/353 atomic regions from SNP 37506 to 38106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,241 DEBUG Processing 64/525 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,344 DEBUG Processing 429/541 atomic regions from SNP 128443 to 129043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,417 DEBUG Processing 127/353 atomic regions from SNP 37806 to 38406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,451 DEBUG Processing 65/525 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,559 DEBUG Processing 430/541 atomic regions from SNP 128743 to 129343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,614 DEBUG Processing 128/353 atomic regions from SNP 38106 to 38706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,662 DEBUG Processing 66/525 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,773 DEBUG Processing 431/541 atomic regions from SNP 129043 to 129643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,821 DEBUG Processing 129/353 atomic regions from SNP 38406 to 39006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,889 DEBUG Processing 67/525 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,985 DEBUG Processing 432/541 atomic regions from SNP 129343 to 129943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,014 DEBUG Processing 130/353 atomic regions from SNP 38706 to 39306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,091 DEBUG Processing 68/525 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,210 DEBUG Processing 131/353 atomic regions from SNP 39006 to 39606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,210 DEBUG Processing 433/541 atomic regions from SNP 129643 to 130243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,297 DEBUG Processing 69/525 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,400 DEBUG Processing 132/353 atomic regions from SNP 39306 to 39906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,434 DEBUG Processing 434/541 atomic regions from SNP 129943 to 130543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,507 DEBUG Processing 70/525 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,578 DEBUG Processing 133/353 atomic regions from SNP 39606 to 40206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,650 DEBUG Processing 435/541 atomic regions from SNP 130243 to 130843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,718 DEBUG Processing 71/525 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,758 DEBUG Processing 134/353 atomic regions from SNP 39906 to 40506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,869 DEBUG Processing 436/541 atomic regions from SNP 130543 to 131143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,934 DEBUG Processing 72/525 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,945 DEBUG Processing 135/353 atomic regions from SNP 40206 to 40806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:40,090 DEBUG Processing 437/541 atomic regions from SNP 130843 to 131443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,140 DEBUG Processing 136/353 atomic regions from SNP 40506 to 41106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:40,153 DEBUG Processing 73/525 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,307 DEBUG Processing 438/541 atomic regions from SNP 131143 to 131743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,344 DEBUG Processing 137/353 atomic regions from SNP 40806 to 41406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:40,364 DEBUG Processing 74/525 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,522 DEBUG Processing 439/541 atomic regions from SNP 131443 to 132043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,531 DEBUG Processing 138/353 atomic regions from SNP 41106 to 41706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:40,574 DEBUG Processing 75/525 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,720 DEBUG Processing 139/353 atomic regions from SNP 41406 to 42006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:40,745 DEBUG Processing 440/541 atomic regions from SNP 131743 to 132343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,789 DEBUG Processing 76/525 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,900 DEBUG Processing 140/353 atomic regions from SNP 41706 to 42306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:40,971 DEBUG Processing 441/541 atomic regions from SNP 132043 to 132643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,999 DEBUG Processing 77/525 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,081 DEBUG Processing 141/353 atomic regions from SNP 42006 to 42606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:41,191 DEBUG Processing 442/541 atomic regions from SNP 132343 to 132943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,212 DEBUG Processing 78/525 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,264 DEBUG Processing 142/353 atomic regions from SNP 42306 to 42906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:41,410 DEBUG Processing 443/541 atomic regions from SNP 132643 to 133243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,422 DEBUG Processing 79/525 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,446 DEBUG Processing 143/353 atomic regions from SNP 42606 to 43206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:41,625 DEBUG Processing 144/353 atomic regions from SNP 42906 to 43506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:41,627 DEBUG Processing 444/541 atomic regions from SNP 132943 to 133543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,627 DEBUG Processing 80/525 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,807 DEBUG Processing 145/353 atomic regions from SNP 43206 to 43806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:41,836 DEBUG Processing 81/525 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,846 DEBUG Processing 445/541 atomic regions from SNP 133243 to 133843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,993 DEBUG Processing 146/353 atomic regions from SNP 43506 to 44106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:42,048 DEBUG Processing 82/525 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,063 DEBUG Processing 446/541 atomic regions from SNP 133543 to 134143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,172 DEBUG Processing 147/353 atomic regions from SNP 43806 to 44406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:42,253 DEBUG Processing 83/525 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,275 DEBUG Processing 447/541 atomic regions from SNP 133843 to 134443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,352 DEBUG Processing 148/353 atomic regions from SNP 44106 to 44706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:42,456 DEBUG Processing 84/525 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,487 DEBUG Processing 448/541 atomic regions from SNP 134143 to 134743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,537 DEBUG Processing 149/353 atomic regions from SNP 44406 to 45006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:42,656 DEBUG Processing 85/525 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,696 DEBUG Processing 449/541 atomic regions from SNP 134443 to 135043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,719 DEBUG Processing 150/353 atomic regions from SNP 44706 to 45306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:42,855 DEBUG Processing 86/525 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,904 DEBUG Processing 151/353 atomic regions from SNP 45006 to 45606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:42,910 DEBUG Processing 450/541 atomic regions from SNP 134743 to 135343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,062 DEBUG Processing 87/525 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,084 DEBUG Processing 152/353 atomic regions from SNP 45306 to 45906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:43,123 DEBUG Processing 451/541 atomic regions from SNP 135043 to 135643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,262 DEBUG Processing 153/353 atomic regions from SNP 45606 to 46206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:43,266 DEBUG Processing 88/525 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,344 DEBUG Processing 452/541 atomic regions from SNP 135343 to 135943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,450 DEBUG Processing 154/353 atomic regions from SNP 45906 to 46506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:43,479 DEBUG Processing 89/525 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,574 DEBUG Processing 453/541 atomic regions from SNP 135643 to 136243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,646 DEBUG Processing 155/353 atomic regions from SNP 46206 to 46806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:43,689 DEBUG Processing 90/525 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,792 DEBUG Processing 454/541 atomic regions from SNP 135943 to 136543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,840 DEBUG Processing 156/353 atomic regions from SNP 46506 to 47106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:43,897 DEBUG Processing 91/525 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,019 DEBUG Processing 455/541 atomic regions from SNP 136243 to 136843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,040 DEBUG Processing 157/353 atomic regions from SNP 46806 to 47406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:44,106 DEBUG Processing 92/525 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,234 DEBUG Processing 158/353 atomic regions from SNP 47106 to 47706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:44,246 DEBUG Processing 456/541 atomic regions from SNP 136543 to 137143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,320 DEBUG Processing 93/525 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,435 DEBUG Processing 159/353 atomic regions from SNP 47406 to 48006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:44,475 DEBUG Processing 457/541 atomic regions from SNP 136843 to 137443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,535 DEBUG Processing 94/525 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,643 DEBUG Processing 160/353 atomic regions from SNP 47706 to 48306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:44,712 DEBUG Processing 458/541 atomic regions from SNP 137143 to 137743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,749 DEBUG Processing 95/525 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,832 DEBUG Processing 161/353 atomic regions from SNP 48006 to 48606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:44,932 DEBUG Processing 459/541 atomic regions from SNP 137443 to 138043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,961 DEBUG Processing 96/525 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,024 DEBUG Processing 162/353 atomic regions from SNP 48306 to 48906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:45,150 DEBUG Processing 460/541 atomic regions from SNP 137743 to 138343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,171 DEBUG Processing 97/525 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,217 DEBUG Processing 163/353 atomic regions from SNP 48606 to 49206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:45,371 DEBUG Processing 461/541 atomic regions from SNP 138043 to 138643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,382 DEBUG Processing 98/525 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,403 DEBUG Processing 164/353 atomic regions from SNP 48906 to 49506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:45,586 DEBUG Processing 165/353 atomic regions from SNP 49206 to 49806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:45,590 DEBUG Processing 462/541 atomic regions from SNP 138343 to 138943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,592 DEBUG Processing 99/525 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,777 DEBUG Processing 166/353 atomic regions from SNP 49506 to 50106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:45,808 DEBUG Processing 100/525 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,814 DEBUG Processing 463/541 atomic regions from SNP 138643 to 139243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,968 DEBUG Processing 167/353 atomic regions from SNP 49806 to 50406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:46,023 DEBUG Processing 101/525 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,039 DEBUG Processing 464/541 atomic regions from SNP 138943 to 139543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,152 DEBUG Processing 168/353 atomic regions from SNP 50106 to 50706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:46,238 DEBUG Processing 102/525 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,259 DEBUG Processing 465/541 atomic regions from SNP 139243 to 139843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,339 DEBUG Processing 169/353 atomic regions from SNP 50406 to 51006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:46,451 DEBUG Processing 103/525 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,497 DEBUG Processing 466/541 atomic regions from SNP 139543 to 140143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,528 DEBUG Processing 170/353 atomic regions from SNP 50706 to 51306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:46,669 DEBUG Processing 104/525 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,721 DEBUG Processing 171/353 atomic regions from SNP 51006 to 51606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:46,723 DEBUG Processing 467/541 atomic regions from SNP 139843 to 140443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,886 DEBUG Processing 105/525 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,916 DEBUG Processing 172/353 atomic regions from SNP 51306 to 51906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:46,948 DEBUG Processing 468/541 atomic regions from SNP 140143 to 140743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,103 DEBUG Processing 106/525 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,106 DEBUG Processing 173/353 atomic regions from SNP 51606 to 52206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:47,174 DEBUG Processing 469/541 atomic regions from SNP 140443 to 141043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,293 DEBUG Processing 174/353 atomic regions from SNP 51906 to 52506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:47,323 DEBUG Processing 107/525 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,397 DEBUG Processing 470/541 atomic regions from SNP 140743 to 141343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,482 DEBUG Processing 175/353 atomic regions from SNP 52206 to 52806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:47,546 DEBUG Processing 108/525 atomic regions from SNP 32207 to 32807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,620 DEBUG Processing 471/541 atomic regions from SNP 141043 to 141643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,678 DEBUG Processing 176/353 atomic regions from SNP 52506 to 53106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:47,760 DEBUG Processing 109/525 atomic regions from SNP 32507 to 33107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,844 DEBUG Processing 472/541 atomic regions from SNP 141343 to 141943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,880 DEBUG Processing 177/353 atomic regions from SNP 52806 to 53406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:47,970 DEBUG Processing 110/525 atomic regions from SNP 32807 to 33407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,068 DEBUG Processing 473/541 atomic regions from SNP 141643 to 142243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,080 DEBUG Processing 178/353 atomic regions from SNP 53106 to 53706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:48,177 DEBUG Processing 111/525 atomic regions from SNP 33107 to 33707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,271 DEBUG Processing 179/353 atomic regions from SNP 53406 to 54006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:48,293 DEBUG Processing 474/541 atomic regions from SNP 141943 to 142543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,387 DEBUG Processing 112/525 atomic regions from SNP 33407 to 34007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,462 DEBUG Processing 180/353 atomic regions from SNP 53706 to 54306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:48,523 DEBUG Processing 475/541 atomic regions from SNP 142243 to 142843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,600 DEBUG Processing 113/525 atomic regions from SNP 33707 to 34307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,652 DEBUG Processing 181/353 atomic regions from SNP 54006 to 54606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:48,761 DEBUG Processing 476/541 atomic regions from SNP 142543 to 143143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,808 DEBUG Processing 114/525 atomic regions from SNP 34007 to 34607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,835 DEBUG Processing 182/353 atomic regions from SNP 54306 to 54906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:48,998 DEBUG Processing 477/541 atomic regions from SNP 142843 to 143443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,018 DEBUG Processing 115/525 atomic regions from SNP 34307 to 34907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,019 DEBUG Processing 183/353 atomic regions from SNP 54606 to 55206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:49,210 DEBUG Processing 184/353 atomic regions from SNP 54906 to 55506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:49,230 DEBUG Processing 116/525 atomic regions from SNP 34607 to 35207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,246 DEBUG Processing 478/541 atomic regions from SNP 143143 to 143743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,399 DEBUG Processing 185/353 atomic regions from SNP 55206 to 55806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:49,446 DEBUG Processing 117/525 atomic regions from SNP 34907 to 35507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,481 DEBUG Processing 479/541 atomic regions from SNP 143443 to 144043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,588 DEBUG Processing 186/353 atomic regions from SNP 55506 to 56106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:49,659 DEBUG Processing 118/525 atomic regions from SNP 35207 to 35807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,707 DEBUG Processing 480/541 atomic regions from SNP 143743 to 144343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,774 DEBUG Processing 187/353 atomic regions from SNP 55806 to 56406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:49,870 DEBUG Processing 119/525 atomic regions from SNP 35507 to 36107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,939 DEBUG Processing 481/541 atomic regions from SNP 144043 to 144643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,964 DEBUG Processing 188/353 atomic regions from SNP 56106 to 56706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:50,079 DEBUG Processing 120/525 atomic regions from SNP 35807 to 36407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,150 DEBUG Processing 189/353 atomic regions from SNP 56406 to 57006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:50,186 DEBUG Processing 482/541 atomic regions from SNP 144343 to 144943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,288 DEBUG Processing 121/525 atomic regions from SNP 36107 to 36707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,338 DEBUG Processing 190/353 atomic regions from SNP 56706 to 57306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:50,420 DEBUG Processing 483/541 atomic regions from SNP 144643 to 145243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,503 DEBUG Processing 122/525 atomic regions from SNP 36407 to 37007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,524 DEBUG Processing 191/353 atomic regions from SNP 57006 to 57606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:50,642 DEBUG Processing 484/541 atomic regions from SNP 144943 to 145543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,707 DEBUG Processing 192/353 atomic regions from SNP 57306 to 57906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:50,731 DEBUG Processing 123/525 atomic regions from SNP 36707 to 37307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,865 DEBUG Processing 485/541 atomic regions from SNP 145243 to 145843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,903 DEBUG Processing 193/353 atomic regions from SNP 57606 to 58206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:50,963 DEBUG Processing 124/525 atomic regions from SNP 37007 to 37607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,082 DEBUG Processing 486/541 atomic regions from SNP 145543 to 146143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,099 DEBUG Processing 194/353 atomic regions from SNP 57906 to 58506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:51,201 DEBUG Processing 125/525 atomic regions from SNP 37307 to 37907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,283 DEBUG Processing 195/353 atomic regions from SNP 58206 to 58806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:51,300 DEBUG Processing 487/541 atomic regions from SNP 145843 to 146443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,427 DEBUG Processing 126/525 atomic regions from SNP 37607 to 38207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,468 DEBUG Processing 196/353 atomic regions from SNP 58506 to 59106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:51,524 DEBUG Processing 488/541 atomic regions from SNP 146143 to 146743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,649 DEBUG Processing 127/525 atomic regions from SNP 37907 to 38507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,656 DEBUG Processing 197/353 atomic regions from SNP 58806 to 59406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:51,743 DEBUG Processing 489/541 atomic regions from SNP 146443 to 147043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,842 DEBUG Processing 198/353 atomic regions from SNP 59106 to 59706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:51,890 DEBUG Processing 128/525 atomic regions from SNP 38207 to 38807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,970 DEBUG Processing 490/541 atomic regions from SNP 146743 to 147343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,022 DEBUG Processing 199/353 atomic regions from SNP 59406 to 60006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:52,106 DEBUG Processing 129/525 atomic regions from SNP 38507 to 39107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,204 DEBUG Processing 200/353 atomic regions from SNP 59706 to 60306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:52,206 DEBUG Processing 491/541 atomic regions from SNP 147043 to 147643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,328 DEBUG Processing 130/525 atomic regions from SNP 38807 to 39407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,393 DEBUG Processing 201/353 atomic regions from SNP 60006 to 60606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:52,445 DEBUG Processing 492/541 atomic regions from SNP 147343 to 147943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,546 DEBUG Processing 131/525 atomic regions from SNP 39107 to 39707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,576 DEBUG Processing 202/353 atomic regions from SNP 60306 to 60906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:52,678 DEBUG Processing 493/541 atomic regions from SNP 147643 to 148243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,754 DEBUG Processing 132/525 atomic regions from SNP 39407 to 40007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,758 DEBUG Processing 203/353 atomic regions from SNP 60606 to 61206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:52,896 DEBUG Processing 494/541 atomic regions from SNP 147943 to 148543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,944 DEBUG Processing 204/353 atomic regions from SNP 60906 to 61506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:52,965 DEBUG Processing 133/525 atomic regions from SNP 39707 to 40307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,119 DEBUG Processing 495/541 atomic regions from SNP 148243 to 148843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,133 DEBUG Processing 205/353 atomic regions from SNP 61206 to 61806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:53,188 DEBUG Processing 134/525 atomic regions from SNP 40007 to 40607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,332 DEBUG Processing 206/353 atomic regions from SNP 61506 to 62106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:53,356 DEBUG Processing 496/541 atomic regions from SNP 148543 to 149143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,398 DEBUG Processing 135/525 atomic regions from SNP 40307 to 40907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,523 DEBUG Processing 207/353 atomic regions from SNP 61806 to 62406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:53,589 DEBUG Processing 497/541 atomic regions from SNP 148843 to 149443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,610 DEBUG Processing 136/525 atomic regions from SNP 40607 to 41207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,706 DEBUG Processing 208/353 atomic regions from SNP 62106 to 62706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:53,820 DEBUG Processing 137/525 atomic regions from SNP 40907 to 41507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,833 DEBUG Processing 498/541 atomic regions from SNP 149143 to 149743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,887 DEBUG Processing 209/353 atomic regions from SNP 62406 to 63006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:54,031 DEBUG Processing 138/525 atomic regions from SNP 41207 to 41807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,064 DEBUG Processing 499/541 atomic regions from SNP 149443 to 150043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,078 DEBUG Processing 210/353 atomic regions from SNP 62706 to 63306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:54,238 DEBUG Processing 139/525 atomic regions from SNP 41507 to 42107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,265 DEBUG Processing 211/353 atomic regions from SNP 63006 to 63606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:54,281 DEBUG Processing 500/541 atomic regions from SNP 149743 to 150343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,445 DEBUG Processing 140/525 atomic regions from SNP 41807 to 42407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,449 DEBUG Processing 212/353 atomic regions from SNP 63306 to 63906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:54,497 DEBUG Processing 501/541 atomic regions from SNP 150043 to 150643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,634 DEBUG Processing 213/353 atomic regions from SNP 63606 to 64206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:54,656 DEBUG Processing 141/525 atomic regions from SNP 42107 to 42707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,712 DEBUG Processing 502/541 atomic regions from SNP 150343 to 150943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,827 DEBUG Processing 214/353 atomic regions from SNP 63906 to 64506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:54,871 DEBUG Processing 142/525 atomic regions from SNP 42407 to 43007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,927 DEBUG Processing 503/541 atomic regions from SNP 150643 to 151243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,013 DEBUG Processing 215/353 atomic regions from SNP 64206 to 64806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:55,083 DEBUG Processing 143/525 atomic regions from SNP 42707 to 43307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,141 DEBUG Processing 504/541 atomic regions from SNP 150943 to 151543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,192 DEBUG Processing 216/353 atomic regions from SNP 64506 to 65106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:55,297 DEBUG Processing 144/525 atomic regions from SNP 43007 to 43607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,362 DEBUG Processing 505/541 atomic regions from SNP 151243 to 151843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,376 DEBUG Processing 217/353 atomic regions from SNP 64806 to 65406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:55,502 DEBUG Processing 145/525 atomic regions from SNP 43307 to 43907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,580 DEBUG Processing 218/353 atomic regions from SNP 65106 to 65706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:55,586 DEBUG Processing 506/541 atomic regions from SNP 151543 to 152143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,700 DEBUG Processing 146/525 atomic regions from SNP 43607 to 44207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,769 DEBUG Processing 219/353 atomic regions from SNP 65406 to 66006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:55,806 DEBUG Processing 507/541 atomic regions from SNP 151843 to 152443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,900 DEBUG Processing 147/525 atomic regions from SNP 43907 to 44507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,950 DEBUG Processing 220/353 atomic regions from SNP 65706 to 66306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:56,017 DEBUG Processing 508/541 atomic regions from SNP 152143 to 152743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,102 DEBUG Processing 148/525 atomic regions from SNP 44207 to 44807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,132 DEBUG Processing 221/353 atomic regions from SNP 66006 to 66606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:56,230 DEBUG Processing 509/541 atomic regions from SNP 152443 to 153043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,309 DEBUG Processing 149/525 atomic regions from SNP 44507 to 45107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,317 DEBUG Processing 222/353 atomic regions from SNP 66306 to 66906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:56,446 DEBUG Processing 510/541 atomic regions from SNP 152743 to 153343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,508 DEBUG Processing 223/353 atomic regions from SNP 66606 to 67206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:56,517 DEBUG Processing 150/525 atomic regions from SNP 44807 to 45407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,651 DEBUG Processing 511/541 atomic regions from SNP 153043 to 153643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,682 DEBUG Processing 224/353 atomic regions from SNP 66906 to 67506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:56,714 DEBUG Processing 151/525 atomic regions from SNP 45107 to 45707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,867 DEBUG Processing 512/541 atomic regions from SNP 153343 to 153943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,874 DEBUG Processing 225/353 atomic regions from SNP 67206 to 67806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:56,922 DEBUG Processing 152/525 atomic regions from SNP 45407 to 46007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,073 DEBUG Processing 226/353 atomic regions from SNP 67506 to 68106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:57,083 DEBUG Processing 513/541 atomic regions from SNP 153643 to 154243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,121 DEBUG Processing 153/525 atomic regions from SNP 45707 to 46307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,267 DEBUG Processing 227/353 atomic regions from SNP 67806 to 68406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:57,294 DEBUG Processing 514/541 atomic regions from SNP 153943 to 154543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,322 DEBUG Processing 154/525 atomic regions from SNP 46007 to 46607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,451 DEBUG Processing 228/353 atomic regions from SNP 68106 to 68706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:57,507 DEBUG Processing 515/541 atomic regions from SNP 154243 to 154843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,529 DEBUG Processing 155/525 atomic regions from SNP 46307 to 46907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,628 DEBUG Processing 229/353 atomic regions from SNP 68406 to 69006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:57,713 DEBUG Processing 516/541 atomic regions from SNP 154543 to 155143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,727 DEBUG Processing 156/525 atomic regions from SNP 46607 to 47207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,805 DEBUG Processing 230/353 atomic regions from SNP 68706 to 69306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:57,921 DEBUG Processing 517/541 atomic regions from SNP 154843 to 155443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,927 DEBUG Processing 157/525 atomic regions from SNP 46907 to 47507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,989 DEBUG Processing 231/353 atomic regions from SNP 69006 to 69606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:58,130 DEBUG Processing 158/525 atomic regions from SNP 47207 to 47807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,132 DEBUG Processing 518/541 atomic regions from SNP 155143 to 155743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,176 DEBUG Processing 232/353 atomic regions from SNP 69306 to 69906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:58,334 DEBUG Processing 159/525 atomic regions from SNP 47507 to 48107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,345 DEBUG Processing 519/541 atomic regions from SNP 155443 to 156043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,375 DEBUG Processing 233/353 atomic regions from SNP 69606 to 70206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:58,546 DEBUG Processing 160/525 atomic regions from SNP 47807 to 48407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,568 DEBUG Processing 520/541 atomic regions from SNP 155743 to 156343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,589 DEBUG Processing 234/353 atomic regions from SNP 69906 to 70506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:58,753 DEBUG Processing 161/525 atomic regions from SNP 48107 to 48707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,788 DEBUG Processing 521/541 atomic regions from SNP 156043 to 156643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,803 DEBUG Processing 235/353 atomic regions from SNP 70206 to 70806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:58,961 DEBUG Processing 162/525 atomic regions from SNP 48407 to 49007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,007 DEBUG Processing 522/541 atomic regions from SNP 156343 to 156943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,013 DEBUG Processing 236/353 atomic regions from SNP 70506 to 71106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:59,177 DEBUG Processing 163/525 atomic regions from SNP 48707 to 49307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,222 DEBUG Processing 237/353 atomic regions from SNP 70806 to 71406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:59,236 DEBUG Processing 523/541 atomic regions from SNP 156643 to 157243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,389 DEBUG Processing 164/525 atomic regions from SNP 49007 to 49607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,415 DEBUG Processing 238/353 atomic regions from SNP 71106 to 71706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:59,458 DEBUG Processing 524/541 atomic regions from SNP 156943 to 157543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,598 DEBUG Processing 165/525 atomic regions from SNP 49307 to 49907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,619 DEBUG Processing 239/353 atomic regions from SNP 71406 to 72006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:59,677 DEBUG Processing 525/541 atomic regions from SNP 157243 to 157843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,805 DEBUG Processing 166/525 atomic regions from SNP 49607 to 50207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,823 DEBUG Processing 240/353 atomic regions from SNP 71706 to 72306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:59,897 DEBUG Processing 526/541 atomic regions from SNP 157543 to 158143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,009 DEBUG Processing 241/353 atomic regions from SNP 72006 to 72606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:00,015 DEBUG Processing 167/525 atomic regions from SNP 49907 to 50507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,115 DEBUG Processing 527/541 atomic regions from SNP 157843 to 158443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,196 DEBUG Processing 242/353 atomic regions from SNP 72306 to 72906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:00,222 DEBUG Processing 168/525 atomic regions from SNP 50207 to 50807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,331 DEBUG Processing 528/541 atomic regions from SNP 158143 to 158743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,375 DEBUG Processing 243/353 atomic regions from SNP 72606 to 73206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:00,427 DEBUG Processing 169/525 atomic regions from SNP 50507 to 51107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,543 DEBUG Processing 529/541 atomic regions from SNP 158443 to 159043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,570 DEBUG Processing 244/353 atomic regions from SNP 72906 to 73506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:00,630 DEBUG Processing 170/525 atomic regions from SNP 50807 to 51407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,752 DEBUG Processing 530/541 atomic regions from SNP 158743 to 159343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,767 DEBUG Processing 245/353 atomic regions from SNP 73206 to 73806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:00,831 DEBUG Processing 171/525 atomic regions from SNP 51107 to 51707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,956 DEBUG Processing 246/353 atomic regions from SNP 73506 to 74106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:00,966 DEBUG Processing 531/541 atomic regions from SNP 159043 to 159643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,040 DEBUG Processing 172/525 atomic regions from SNP 51407 to 52007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,149 DEBUG Processing 247/353 atomic regions from SNP 73806 to 74406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:01,196 DEBUG Processing 532/541 atomic regions from SNP 159343 to 159943 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,251 DEBUG Processing 173/525 atomic regions from SNP 51707 to 52307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,339 DEBUG Processing 248/353 atomic regions from SNP 74106 to 74706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:01,410 DEBUG Processing 533/541 atomic regions from SNP 159643 to 160243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,459 DEBUG Processing 174/525 atomic regions from SNP 52007 to 52607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,545 DEBUG Processing 249/353 atomic regions from SNP 74406 to 75006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:01,622 DEBUG Processing 534/541 atomic regions from SNP 159943 to 160543 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,668 DEBUG Processing 175/525 atomic regions from SNP 52307 to 52907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,739 DEBUG Processing 250/353 atomic regions from SNP 74706 to 75306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:01,835 DEBUG Processing 535/541 atomic regions from SNP 160243 to 160843 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,877 DEBUG Processing 176/525 atomic regions from SNP 52607 to 53207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,931 DEBUG Processing 251/353 atomic regions from SNP 75006 to 75606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:02,053 DEBUG Processing 536/541 atomic regions from SNP 160543 to 161143 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,085 DEBUG Processing 177/525 atomic regions from SNP 52907 to 53507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,125 DEBUG Processing 252/353 atomic regions from SNP 75306 to 75906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:02,265 DEBUG Processing 537/541 atomic regions from SNP 160843 to 161443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,290 DEBUG Processing 178/525 atomic regions from SNP 53207 to 53807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,320 DEBUG Processing 253/353 atomic regions from SNP 75606 to 76206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:02,474 DEBUG Processing 538/541 atomic regions from SNP 161143 to 161743 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,495 DEBUG Processing 179/525 atomic regions from SNP 53507 to 54107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,527 DEBUG Processing 254/353 atomic regions from SNP 75906 to 76506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:02,682 DEBUG Processing 539/541 atomic regions from SNP 161443 to 162043 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,699 DEBUG Processing 180/525 atomic regions from SNP 53807 to 54407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,720 DEBUG Processing 255/353 atomic regions from SNP 76206 to 76806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:02,893 DEBUG Processing 540/541 atomic regions from SNP 161743 to 162343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,904 DEBUG Processing 181/525 atomic regions from SNP 54107 to 54707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,924 DEBUG Processing 256/353 atomic regions from SNP 76506 to 77106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:03,100 DEBUG Processing 541/541 atomic regions from SNP 162043 to 162643 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,105 DEBUG Processing 182/525 atomic regions from SNP 54407 to 55007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,122 DEBUG Processing 257/353 atomic regions from SNP 76806 to 77406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:03,235 DEBUG Unique SNPs positions in subchromosome 1: 162644 2025-01-31 09:58:03,301 DEBUG Processing 183/525 atomic regions from SNP 54707 to 55307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,326 DEBUG Processing 258/353 atomic regions from SNP 77106 to 77706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:03,495 DEBUG Processing 184/525 atomic regions from SNP 55007 to 55607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,512 DEBUG Processing 259/353 atomic regions from SNP 77406 to 78006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:03,699 DEBUG Processing 185/525 atomic regions from SNP 55307 to 55907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,714 DEBUG Processing 260/353 atomic regions from SNP 77706 to 78306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:03,895 DEBUG Processing 261/353 atomic regions from SNP 78006 to 78606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:03,908 DEBUG Processing 186/525 atomic regions from SNP 55607 to 56207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,089 DEBUG Processing 262/353 atomic regions from SNP 78306 to 78906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,121 DEBUG Processing 187/525 atomic regions from SNP 55907 to 56507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,286 DEBUG Processing 263/353 atomic regions from SNP 78606 to 79206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,328 DEBUG Processing 188/525 atomic regions from SNP 56207 to 56807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,479 DEBUG Processing 264/353 atomic regions from SNP 78906 to 79506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,548 DEBUG Processing 189/525 atomic regions from SNP 56507 to 57107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,664 DEBUG Processing 265/353 atomic regions from SNP 79206 to 79806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,772 DEBUG Processing 190/525 atomic regions from SNP 56807 to 57407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,855 DEBUG Processing 266/353 atomic regions from SNP 79506 to 80106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,997 DEBUG Processing 191/525 atomic regions from SNP 57107 to 57707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,043 DEBUG Processing 267/353 atomic regions from SNP 79806 to 80406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,211 DEBUG Processing 192/525 atomic regions from SNP 57407 to 58007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,235 DEBUG Processing 268/353 atomic regions from SNP 80106 to 80706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,422 DEBUG Processing 193/525 atomic regions from SNP 57707 to 58307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,428 DEBUG Processing 269/353 atomic regions from SNP 80406 to 81006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,618 DEBUG Processing 270/353 atomic regions from SNP 80706 to 81306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,640 DEBUG Processing 194/525 atomic regions from SNP 58007 to 58607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,800 DEBUG Processing 271/353 atomic regions from SNP 81006 to 81606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,860 DEBUG Processing 195/525 atomic regions from SNP 58307 to 58907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,991 DEBUG Processing 272/353 atomic regions from SNP 81306 to 81906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,097 DEBUG Processing 196/525 atomic regions from SNP 58607 to 59207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,177 DEBUG Processing 273/353 atomic regions from SNP 81606 to 82206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,218 DEBUG Subchromosome time: 141.11281277192757, subchromosome SNPs: 162644 2025-01-31 09:58:06,219 DEBUG Estimated BADs: [2.25, 0.75, 2.25, 4.49, 0.75, 2.25, 4.49, 2.25, 1.12, 4.49, 0.75, 2.25, 0.75, 2.25, 0.75] SNP counts: [21449, 7485, 6017, 23968, 7508, 6325, 4491, 9294, 5401, 3599, 5107, 27611, 2370, 23113, 8906] SNP IDs counts: [21449, 7485, 6017, 23968, 7508, 6325, 4491, 9294, 5401, 3599, 5107, 27611, 2370, 23113, 8906] Critical gap: 523132bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.01Mbp, 20.51Mbp, 24.35Mbp, 37.34Mbp, 41.99Mbp, 45.42Mbp, 47.77Mbp, 52.77Mbp, 56.01Mbp, 57.99Mbp, 60.92Mbp, 75.96Mbp, 77.31Mbp, 89.78Mbp, 94.99Mbp] 2025-01-31 09:58:06,219 DEBUG chr17 time: 141.1133305549156 s 2025-01-31 09:58:06,327 DEBUG chr17: Fitting background model for 15 segments 2025-01-31 09:58:06,330 DEBUG Processing 197/525 atomic regions from SNP 58907 to 59507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,364 DEBUG Processing 274/353 atomic regions from SNP 81906 to 82506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,551 DEBUG Processing 275/353 atomic regions from SNP 82206 to 82806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,564 DEBUG Processing 198/525 atomic regions from SNP 59207 to 59807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,743 DEBUG Processing 276/353 atomic regions from SNP 82506 to 83106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,802 DEBUG Processing 199/525 atomic regions from SNP 59507 to 60107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,936 DEBUG Processing 277/353 atomic regions from SNP 82806 to 83406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,041 DEBUG Processing 200/525 atomic regions from SNP 59807 to 60407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,129 DEBUG Processing 278/353 atomic regions from SNP 83106 to 83706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,279 DEBUG Processing 201/525 atomic regions from SNP 60107 to 60707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,324 DEBUG Processing 279/353 atomic regions from SNP 83406 to 84006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,517 DEBUG Processing 280/353 atomic regions from SNP 83706 to 84306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,533 DEBUG Processing 202/525 atomic regions from SNP 60407 to 61007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,705 DEBUG Processing 281/353 atomic regions from SNP 84006 to 84606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,748 DEBUG Processing 203/525 atomic regions from SNP 60707 to 61307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,893 DEBUG Processing 282/353 atomic regions from SNP 84306 to 84906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,961 DEBUG Processing 204/525 atomic regions from SNP 61007 to 61607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,097 DEBUG Processing 283/353 atomic regions from SNP 84606 to 85206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,173 DEBUG Processing 205/525 atomic regions from SNP 61307 to 61907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,281 DEBUG Processing 284/353 atomic regions from SNP 84906 to 85506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,383 DEBUG Processing 206/525 atomic regions from SNP 61607 to 62207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,470 DEBUG Processing 285/353 atomic regions from SNP 85206 to 85806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,599 DEBUG Processing 207/525 atomic regions from SNP 61907 to 62507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,658 DEBUG Processing 286/353 atomic regions from SNP 85506 to 86106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,817 DEBUG Processing 208/525 atomic regions from SNP 62207 to 62807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,847 DEBUG Processing 287/353 atomic regions from SNP 85806 to 86406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,039 DEBUG Processing 288/353 atomic regions from SNP 86106 to 86706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,047 DEBUG Processing 209/525 atomic regions from SNP 62507 to 63107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,223 DEBUG Processing 289/353 atomic regions from SNP 86406 to 87006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,278 DEBUG Processing 210/525 atomic regions from SNP 62807 to 63407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,413 DEBUG Processing 290/353 atomic regions from SNP 86706 to 87306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,516 DEBUG Processing 211/525 atomic regions from SNP 63107 to 63707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,604 DEBUG Processing 291/353 atomic regions from SNP 87006 to 87606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,747 DEBUG Processing 212/525 atomic regions from SNP 63407 to 64007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,798 DEBUG Processing 292/353 atomic regions from SNP 87306 to 87906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,975 DEBUG Processing 213/525 atomic regions from SNP 63707 to 64307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,002 DEBUG Processing 293/353 atomic regions from SNP 87606 to 88206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,196 DEBUG Processing 294/353 atomic regions from SNP 87906 to 88506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,197 DEBUG Processing 214/525 atomic regions from SNP 64007 to 64607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,385 DEBUG Processing 295/353 atomic regions from SNP 88206 to 88806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,407 DEBUG Processing 215/525 atomic regions from SNP 64307 to 64907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,587 DEBUG Processing 296/353 atomic regions from SNP 88506 to 89106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,613 DEBUG Processing 216/525 atomic regions from SNP 64607 to 65207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,775 DEBUG Processing 297/353 atomic regions from SNP 88806 to 89406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,829 DEBUG Processing 217/525 atomic regions from SNP 64907 to 65507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,963 DEBUG Processing 298/353 atomic regions from SNP 89106 to 89706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,045 DEBUG Processing 218/525 atomic regions from SNP 65207 to 65807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,156 DEBUG Processing 299/353 atomic regions from SNP 89406 to 90006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,262 DEBUG Processing 219/525 atomic regions from SNP 65507 to 66107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,339 DEBUG Processing 300/353 atomic regions from SNP 89706 to 90306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,477 DEBUG Processing 220/525 atomic regions from SNP 65807 to 66407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,528 DEBUG Processing 301/353 atomic regions from SNP 90006 to 90606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,687 DEBUG Processing 221/525 atomic regions from SNP 66107 to 66707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,720 DEBUG Processing 302/353 atomic regions from SNP 90306 to 90906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,901 DEBUG Processing 222/525 atomic regions from SNP 66407 to 67007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,917 DEBUG Processing 303/353 atomic regions from SNP 90606 to 91206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,107 DEBUG Processing 223/525 atomic regions from SNP 66707 to 67307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,123 DEBUG Processing 304/353 atomic regions from SNP 90906 to 91506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,331 DEBUG Processing 305/353 atomic regions from SNP 91206 to 91806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,333 DEBUG Processing 224/525 atomic regions from SNP 67007 to 67607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,532 DEBUG Processing 306/353 atomic regions from SNP 91506 to 92106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,547 DEBUG Processing 225/525 atomic regions from SNP 67307 to 67907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,738 DEBUG Processing 307/353 atomic regions from SNP 91806 to 92406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,765 DEBUG Processing 226/525 atomic regions from SNP 67607 to 68207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,956 DEBUG Processing 308/353 atomic regions from SNP 92106 to 92706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,984 DEBUG Processing 227/525 atomic regions from SNP 67907 to 68507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,165 DEBUG Processing 309/353 atomic regions from SNP 92406 to 93006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,205 DEBUG Processing 228/525 atomic regions from SNP 68207 to 68807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,346 DEBUG Processing 310/353 atomic regions from SNP 92706 to 93306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,413 DEBUG Processing 229/525 atomic regions from SNP 68507 to 69107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,531 DEBUG Processing 311/353 atomic regions from SNP 93006 to 93606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,622 DEBUG Processing 230/525 atomic regions from SNP 68807 to 69407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,722 DEBUG Processing 312/353 atomic regions from SNP 93306 to 93906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,828 DEBUG Processing 231/525 atomic regions from SNP 69107 to 69707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,909 DEBUG Processing 313/353 atomic regions from SNP 93606 to 94206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,038 DEBUG Processing 232/525 atomic regions from SNP 69407 to 70007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,094 DEBUG Processing 314/353 atomic regions from SNP 93906 to 94506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,254 DEBUG Processing 233/525 atomic regions from SNP 69707 to 70307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,279 DEBUG Processing 315/353 atomic regions from SNP 94206 to 94806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,470 DEBUG Processing 234/525 atomic regions from SNP 70007 to 70607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,483 DEBUG Processing 316/353 atomic regions from SNP 94506 to 95106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,675 DEBUG Processing 317/353 atomic regions from SNP 94806 to 95406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,681 DEBUG Processing 235/525 atomic regions from SNP 70307 to 70907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,867 DEBUG Processing 318/353 atomic regions from SNP 95106 to 95706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,900 DEBUG Processing 236/525 atomic regions from SNP 70607 to 71207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,059 DEBUG Processing 319/353 atomic regions from SNP 95406 to 96006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:15,122 DEBUG Processing 237/525 atomic regions from SNP 70907 to 71507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,243 DEBUG Processing 320/353 atomic regions from SNP 95706 to 96306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:15,337 DEBUG Processing 238/525 atomic regions from SNP 71207 to 71807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,431 DEBUG Processing 321/353 atomic regions from SNP 96006 to 96606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:15,557 DEBUG Processing 239/525 atomic regions from SNP 71507 to 72107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,626 DEBUG Processing 322/353 atomic regions from SNP 96306 to 96906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:15,775 DEBUG Processing 240/525 atomic regions from SNP 71807 to 72407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,826 DEBUG Processing 323/353 atomic regions from SNP 96606 to 97206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:15,989 DEBUG Processing 241/525 atomic regions from SNP 72107 to 72707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,032 DEBUG Processing 324/353 atomic regions from SNP 96906 to 97506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:16,195 DEBUG Processing 242/525 atomic regions from SNP 72407 to 73007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,240 DEBUG Processing 325/353 atomic regions from SNP 97206 to 97806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:16,393 DEBUG Processing 243/525 atomic regions from SNP 72707 to 73307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,441 DEBUG Processing 326/353 atomic regions from SNP 97506 to 98106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:16,591 DEBUG Processing 244/525 atomic regions from SNP 73007 to 73607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,636 DEBUG Processing 327/353 atomic regions from SNP 97806 to 98406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:16,803 DEBUG Processing 245/525 atomic regions from SNP 73307 to 73907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,842 DEBUG Processing 328/353 atomic regions from SNP 98106 to 98706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:17,002 DEBUG Processing 246/525 atomic regions from SNP 73607 to 74207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,017 DEBUG Processing 329/353 atomic regions from SNP 98406 to 99006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:17,200 DEBUG Processing 330/353 atomic regions from SNP 98706 to 99306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:17,206 DEBUG Processing 247/525 atomic regions from SNP 73907 to 74507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,391 DEBUG Processing 331/353 atomic regions from SNP 99006 to 99606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:17,413 DEBUG Processing 248/525 atomic regions from SNP 74207 to 74807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,596 DEBUG Processing 332/353 atomic regions from SNP 99306 to 99906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:17,635 DEBUG Processing 249/525 atomic regions from SNP 74507 to 75107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,780 DEBUG Processing 333/353 atomic regions from SNP 99606 to 100206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:17,842 DEBUG Processing 250/525 atomic regions from SNP 74807 to 75407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,964 DEBUG Processing 334/353 atomic regions from SNP 99906 to 100506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:18,050 DEBUG Processing 251/525 atomic regions from SNP 75107 to 75707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,140 DEBUG Processing 335/353 atomic regions from SNP 100206 to 100806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:18,257 DEBUG Processing 252/525 atomic regions from SNP 75407 to 76007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,315 DEBUG Processing 336/353 atomic regions from SNP 100506 to 101106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:18,467 DEBUG Processing 253/525 atomic regions from SNP 75707 to 76307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,501 DEBUG Processing 337/353 atomic regions from SNP 100806 to 101406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:18,677 DEBUG Processing 254/525 atomic regions from SNP 76007 to 76607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,685 DEBUG Processing 338/353 atomic regions from SNP 101106 to 101706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:18,869 DEBUG Processing 339/353 atomic regions from SNP 101406 to 102006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:18,884 DEBUG Processing 255/525 atomic regions from SNP 76307 to 76907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,057 DEBUG Processing 340/353 atomic regions from SNP 101706 to 102306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:19,089 DEBUG Processing 256/525 atomic regions from SNP 76607 to 77207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,236 DEBUG Processing 341/353 atomic regions from SNP 102006 to 102606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:19,292 DEBUG Processing 257/525 atomic regions from SNP 76907 to 77507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,422 DEBUG Processing 342/353 atomic regions from SNP 102306 to 102906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:19,495 DEBUG Processing 258/525 atomic regions from SNP 77207 to 77807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,618 DEBUG Processing 343/353 atomic regions from SNP 102606 to 103206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:19,696 DEBUG Processing 259/525 atomic regions from SNP 77507 to 78107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,803 DEBUG Processing 344/353 atomic regions from SNP 102906 to 103506 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:19,907 DEBUG Processing 260/525 atomic regions from SNP 77807 to 78407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,983 DEBUG Processing 345/353 atomic regions from SNP 103206 to 103806 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:20,124 DEBUG Processing 261/525 atomic regions from SNP 78107 to 78707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,166 DEBUG Processing 346/353 atomic regions from SNP 103506 to 104106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:20,334 DEBUG Processing 262/525 atomic regions from SNP 78407 to 79007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,344 DEBUG Processing 347/353 atomic regions from SNP 103806 to 104406 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:20,524 DEBUG Processing 348/353 atomic regions from SNP 104106 to 104706 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:20,540 DEBUG Processing 263/525 atomic regions from SNP 78707 to 79307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,708 DEBUG Processing 349/353 atomic regions from SNP 104406 to 105006 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:20,755 DEBUG Processing 264/525 atomic regions from SNP 79007 to 79607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,898 DEBUG Processing 350/353 atomic regions from SNP 104706 to 105306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:20,967 DEBUG Processing 265/525 atomic regions from SNP 79307 to 79907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,081 DEBUG Processing 351/353 atomic regions from SNP 105006 to 105606 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:21,183 DEBUG Processing 266/525 atomic regions from SNP 79607 to 80207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,269 DEBUG Processing 352/353 atomic regions from SNP 105306 to 105906 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:21,387 DEBUG Processing 267/525 atomic regions from SNP 79907 to 80507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,455 DEBUG Processing 353/353 atomic regions from SNP 105606 to 106206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:21,592 DEBUG Unique SNPs positions in subchromosome 1: 106207 2025-01-31 09:58:21,592 DEBUG Processing 268/525 atomic regions from SNP 80207 to 80807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,797 DEBUG Processing 269/525 atomic regions from SNP 80507 to 81107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,003 DEBUG Processing 270/525 atomic regions from SNP 80807 to 81407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,110 DEBUG Subchromosome time: 80.40834022907075, subchromosome SNPs: 106207 2025-01-31 09:58:22,110 DEBUG Estimated BADs: [4.41, 1.10, 2.21, 0.74, 2.21, 1.10, 2.21, 4.41, 2.21, 0.74, 2.21] SNP counts: [13777, 4928, 9602, 1795, 24590, 3900, 15769, 4044, 5725, 5068, 17009] SNP IDs counts: [13777, 4928, 9602, 1795, 24590, 3900, 15769, 4044, 5725, 5068, 17009] Critical gap: 410118bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 11.03Mbp, 13.87Mbp, 19.08Mbp, 20.07Mbp, 33.31Mbp, 35.59Mbp, 44.24Mbp, 46.37Mbp, 49.42Mbp, 52.28Mbp, 61.43Mbp] 2025-01-31 09:58:22,110 DEBUG chr19 time: 80.4087783730356 s 2025-01-31 09:58:22,176 DEBUG chr19: Fitting background model for 11 segments 2025-01-31 09:58:22,209 DEBUG Processing 271/525 atomic regions from SNP 81107 to 81707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,422 DEBUG Processing 272/525 atomic regions from SNP 81407 to 82007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,637 DEBUG Processing 273/525 atomic regions from SNP 81707 to 82307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,838 DEBUG Processing 274/525 atomic regions from SNP 82007 to 82607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,043 DEBUG Processing 275/525 atomic regions from SNP 82307 to 82907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,253 DEBUG Processing 276/525 atomic regions from SNP 82607 to 83207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,460 DEBUG Processing 277/525 atomic regions from SNP 82907 to 83507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,683 DEBUG Processing 278/525 atomic regions from SNP 83207 to 83807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,890 DEBUG Processing 279/525 atomic regions from SNP 83507 to 84107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,105 DEBUG Processing 280/525 atomic regions from SNP 83807 to 84407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,322 DEBUG Processing 281/525 atomic regions from SNP 84107 to 84707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,548 DEBUG Processing 282/525 atomic regions from SNP 84407 to 85007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,760 DEBUG Processing 283/525 atomic regions from SNP 84707 to 85307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,981 DEBUG Processing 284/525 atomic regions from SNP 85007 to 85607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,191 DEBUG Processing 285/525 atomic regions from SNP 85307 to 85907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,403 DEBUG Processing 286/525 atomic regions from SNP 85607 to 86207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,607 DEBUG Processing 287/525 atomic regions from SNP 85907 to 86507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,821 DEBUG Processing 288/525 atomic regions from SNP 86207 to 86807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,030 DEBUG Processing 289/525 atomic regions from SNP 86507 to 87107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,247 DEBUG Processing 290/525 atomic regions from SNP 86807 to 87407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,459 DEBUG Processing 291/525 atomic regions from SNP 87107 to 87707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,665 DEBUG Processing 292/525 atomic regions from SNP 87407 to 88007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,871 DEBUG Processing 293/525 atomic regions from SNP 87707 to 88307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,079 DEBUG Processing 294/525 atomic regions from SNP 88007 to 88607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,288 DEBUG Processing 295/525 atomic regions from SNP 88307 to 88907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,494 DEBUG Processing 296/525 atomic regions from SNP 88607 to 89207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,699 DEBUG Processing 297/525 atomic regions from SNP 88907 to 89507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,901 DEBUG Processing 298/525 atomic regions from SNP 89207 to 89807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,107 DEBUG Processing 299/525 atomic regions from SNP 89507 to 90107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,310 DEBUG Processing 300/525 atomic regions from SNP 89807 to 90407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,514 DEBUG Processing 301/525 atomic regions from SNP 90107 to 90707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,714 DEBUG Processing 302/525 atomic regions from SNP 90407 to 91007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,914 DEBUG Processing 303/525 atomic regions from SNP 90707 to 91307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,114 DEBUG Processing 304/525 atomic regions from SNP 91007 to 91607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,313 DEBUG Processing 305/525 atomic regions from SNP 91307 to 91907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,518 DEBUG Processing 306/525 atomic regions from SNP 91607 to 92207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,719 DEBUG Processing 307/525 atomic regions from SNP 91907 to 92507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,926 DEBUG Processing 308/525 atomic regions from SNP 92207 to 92807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,138 DEBUG Processing 309/525 atomic regions from SNP 92507 to 93107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,345 DEBUG Processing 310/525 atomic regions from SNP 92807 to 93407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,541 DEBUG Processing 311/525 atomic regions from SNP 93107 to 93707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,746 DEBUG Processing 312/525 atomic regions from SNP 93407 to 94007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,957 DEBUG Processing 313/525 atomic regions from SNP 93707 to 94307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,151 DEBUG Processing 314/525 atomic regions from SNP 94007 to 94607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,352 DEBUG Processing 315/525 atomic regions from SNP 94307 to 94907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,565 DEBUG Processing 316/525 atomic regions from SNP 94607 to 95207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,773 DEBUG Processing 317/525 atomic regions from SNP 94907 to 95507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,975 DEBUG Processing 318/525 atomic regions from SNP 95207 to 95807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,188 DEBUG Processing 319/525 atomic regions from SNP 95507 to 96107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,390 DEBUG Processing 320/525 atomic regions from SNP 95807 to 96407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,608 DEBUG Processing 321/525 atomic regions from SNP 96107 to 96707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,828 DEBUG Processing 322/525 atomic regions from SNP 96407 to 97007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,045 DEBUG Processing 323/525 atomic regions from SNP 96707 to 97307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,260 DEBUG Processing 324/525 atomic regions from SNP 97007 to 97607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,464 DEBUG Processing 325/525 atomic regions from SNP 97307 to 97907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,666 DEBUG Processing 326/525 atomic regions from SNP 97607 to 98207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,866 DEBUG Processing 327/525 atomic regions from SNP 97907 to 98507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,083 DEBUG Processing 328/525 atomic regions from SNP 98207 to 98807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,292 DEBUG Processing 329/525 atomic regions from SNP 98507 to 99107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,497 DEBUG Processing 330/525 atomic regions from SNP 98807 to 99407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,692 DEBUG Processing 331/525 atomic regions from SNP 99107 to 99707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,887 DEBUG Processing 332/525 atomic regions from SNP 99407 to 100007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,084 DEBUG Processing 333/525 atomic regions from SNP 99707 to 100307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,284 DEBUG Processing 334/525 atomic regions from SNP 100007 to 100607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,483 DEBUG Processing 335/525 atomic regions from SNP 100307 to 100907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,673 DEBUG Processing 336/525 atomic regions from SNP 100607 to 101207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,880 DEBUG Processing 337/525 atomic regions from SNP 100907 to 101507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,078 DEBUG Processing 338/525 atomic regions from SNP 101207 to 101807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,281 DEBUG Processing 339/525 atomic regions from SNP 101507 to 102107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,482 DEBUG Processing 340/525 atomic regions from SNP 101807 to 102407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,679 DEBUG Processing 341/525 atomic regions from SNP 102107 to 102707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,879 DEBUG Processing 342/525 atomic regions from SNP 102407 to 103007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,079 DEBUG Processing 343/525 atomic regions from SNP 102707 to 103307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,279 DEBUG Processing 344/525 atomic regions from SNP 103007 to 103607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,496 DEBUG Processing 345/525 atomic regions from SNP 103307 to 103907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,733 DEBUG Processing 346/525 atomic regions from SNP 103607 to 104207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,965 DEBUG Processing 347/525 atomic regions from SNP 103907 to 104507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,186 DEBUG Processing 348/525 atomic regions from SNP 104207 to 104807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,408 DEBUG Processing 349/525 atomic regions from SNP 104507 to 105107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,627 DEBUG Processing 350/525 atomic regions from SNP 104807 to 105407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,847 DEBUG Processing 351/525 atomic regions from SNP 105107 to 105707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,068 DEBUG Processing 352/525 atomic regions from SNP 105407 to 106007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,292 DEBUG Processing 353/525 atomic regions from SNP 105707 to 106307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,492 DEBUG Processing 354/525 atomic regions from SNP 106007 to 106607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,686 DEBUG Processing 355/525 atomic regions from SNP 106307 to 106907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,880 DEBUG Processing 356/525 atomic regions from SNP 106607 to 107207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,076 DEBUG Processing 357/525 atomic regions from SNP 106907 to 107507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,268 DEBUG Processing 358/525 atomic regions from SNP 107207 to 107807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,463 DEBUG Processing 359/525 atomic regions from SNP 107507 to 108107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,657 DEBUG Processing 360/525 atomic regions from SNP 107807 to 108407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,849 DEBUG Processing 361/525 atomic regions from SNP 108107 to 108707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,036 DEBUG Processing 362/525 atomic regions from SNP 108407 to 109007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,228 DEBUG Processing 363/525 atomic regions from SNP 108707 to 109307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,418 DEBUG Processing 364/525 atomic regions from SNP 109007 to 109607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,602 DEBUG Processing 365/525 atomic regions from SNP 109307 to 109907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,789 DEBUG Processing 366/525 atomic regions from SNP 109607 to 110207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,974 DEBUG Processing 367/525 atomic regions from SNP 109907 to 110507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,160 DEBUG Processing 368/525 atomic regions from SNP 110207 to 110807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,354 DEBUG Processing 369/525 atomic regions from SNP 110507 to 111107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,572 DEBUG Processing 370/525 atomic regions from SNP 110807 to 111407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,777 DEBUG Processing 371/525 atomic regions from SNP 111107 to 111707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,969 DEBUG Processing 372/525 atomic regions from SNP 111407 to 112007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,162 DEBUG Processing 373/525 atomic regions from SNP 111707 to 112307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,359 DEBUG Processing 374/525 atomic regions from SNP 112007 to 112607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,558 DEBUG Processing 375/525 atomic regions from SNP 112307 to 112907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,752 DEBUG Processing 376/525 atomic regions from SNP 112607 to 113207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,943 DEBUG Processing 377/525 atomic regions from SNP 112907 to 113507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,137 DEBUG Processing 378/525 atomic regions from SNP 113207 to 113807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,341 DEBUG Processing 379/525 atomic regions from SNP 113507 to 114107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,537 DEBUG Processing 380/525 atomic regions from SNP 113807 to 114407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,728 DEBUG Processing 381/525 atomic regions from SNP 114107 to 114707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,925 DEBUG Processing 382/525 atomic regions from SNP 114407 to 115007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,122 DEBUG Processing 383/525 atomic regions from SNP 114707 to 115307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,317 DEBUG Processing 384/525 atomic regions from SNP 115007 to 115607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,512 DEBUG Processing 385/525 atomic regions from SNP 115307 to 115907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,710 DEBUG Processing 386/525 atomic regions from SNP 115607 to 116207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,922 DEBUG Processing 387/525 atomic regions from SNP 115907 to 116507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,143 DEBUG Processing 388/525 atomic regions from SNP 116207 to 116807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,360 DEBUG Processing 389/525 atomic regions from SNP 116507 to 117107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,577 DEBUG Processing 390/525 atomic regions from SNP 116807 to 117407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,784 DEBUG Processing 391/525 atomic regions from SNP 117107 to 117707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,988 DEBUG Processing 392/525 atomic regions from SNP 117407 to 118007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,188 DEBUG Processing 393/525 atomic regions from SNP 117707 to 118307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,385 DEBUG Processing 394/525 atomic regions from SNP 118007 to 118607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,586 DEBUG Processing 395/525 atomic regions from SNP 118307 to 118907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,787 DEBUG Processing 396/525 atomic regions from SNP 118607 to 119207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,989 DEBUG Processing 397/525 atomic regions from SNP 118907 to 119507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,193 DEBUG Processing 398/525 atomic regions from SNP 119207 to 119807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,387 DEBUG Processing 399/525 atomic regions from SNP 119507 to 120107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,592 DEBUG Processing 400/525 atomic regions from SNP 119807 to 120407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,789 DEBUG Processing 401/525 atomic regions from SNP 120107 to 120707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,987 DEBUG Processing 402/525 atomic regions from SNP 120407 to 121007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,181 DEBUG Processing 403/525 atomic regions from SNP 120707 to 121307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,374 DEBUG Processing 404/525 atomic regions from SNP 121007 to 121607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,572 DEBUG Processing 405/525 atomic regions from SNP 121307 to 121907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,765 DEBUG Processing 406/525 atomic regions from SNP 121607 to 122207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,966 DEBUG Processing 407/525 atomic regions from SNP 121907 to 122507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,172 DEBUG Processing 408/525 atomic regions from SNP 122207 to 122807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,361 DEBUG Processing 409/525 atomic regions from SNP 122507 to 123107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,553 DEBUG Processing 410/525 atomic regions from SNP 122807 to 123407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,747 DEBUG Processing 411/525 atomic regions from SNP 123107 to 123707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,935 DEBUG Processing 412/525 atomic regions from SNP 123407 to 124007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,134 DEBUG Processing 413/525 atomic regions from SNP 123707 to 124307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,334 DEBUG Processing 414/525 atomic regions from SNP 124007 to 124607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,527 DEBUG Processing 415/525 atomic regions from SNP 124307 to 124907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,722 DEBUG Processing 416/525 atomic regions from SNP 124607 to 125207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,917 DEBUG Processing 417/525 atomic regions from SNP 124907 to 125507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,113 DEBUG Processing 418/525 atomic regions from SNP 125207 to 125807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,306 DEBUG Processing 419/525 atomic regions from SNP 125507 to 126107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,512 DEBUG Processing 420/525 atomic regions from SNP 125807 to 126407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,708 DEBUG Processing 421/525 atomic regions from SNP 126107 to 126707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,913 DEBUG Processing 422/525 atomic regions from SNP 126407 to 127007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,114 DEBUG Processing 423/525 atomic regions from SNP 126707 to 127307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,312 DEBUG Processing 424/525 atomic regions from SNP 127007 to 127607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,506 DEBUG Processing 425/525 atomic regions from SNP 127307 to 127907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,708 DEBUG Processing 426/525 atomic regions from SNP 127607 to 128207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,922 DEBUG Processing 427/525 atomic regions from SNP 127907 to 128507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,130 DEBUG Processing 428/525 atomic regions from SNP 128207 to 128807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,327 DEBUG Processing 429/525 atomic regions from SNP 128507 to 129107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,521 DEBUG Processing 430/525 atomic regions from SNP 128807 to 129407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,715 DEBUG Processing 431/525 atomic regions from SNP 129107 to 129707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,912 DEBUG Processing 432/525 atomic regions from SNP 129407 to 130007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,119 DEBUG Processing 433/525 atomic regions from SNP 129707 to 130307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,321 DEBUG Processing 434/525 atomic regions from SNP 130007 to 130607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,517 DEBUG Processing 435/525 atomic regions from SNP 130307 to 130907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,724 DEBUG Processing 436/525 atomic regions from SNP 130607 to 131207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,937 DEBUG Processing 437/525 atomic regions from SNP 130907 to 131507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,179 DEBUG Processing 438/525 atomic regions from SNP 131207 to 131807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,383 DEBUG Processing 439/525 atomic regions from SNP 131507 to 132107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,584 DEBUG Processing 440/525 atomic regions from SNP 131807 to 132407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,790 DEBUG Processing 441/525 atomic regions from SNP 132107 to 132707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,987 DEBUG Processing 442/525 atomic regions from SNP 132407 to 133007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,176 DEBUG Processing 443/525 atomic regions from SNP 132707 to 133307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,363 DEBUG Processing 444/525 atomic regions from SNP 133007 to 133607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,552 DEBUG Processing 445/525 atomic regions from SNP 133307 to 133907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,746 DEBUG Processing 446/525 atomic regions from SNP 133607 to 134207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,956 DEBUG Processing 447/525 atomic regions from SNP 133907 to 134507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,154 DEBUG Processing 448/525 atomic regions from SNP 134207 to 134807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,349 DEBUG Processing 449/525 atomic regions from SNP 134507 to 135107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,552 DEBUG Processing 450/525 atomic regions from SNP 134807 to 135407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,766 DEBUG Processing 451/525 atomic regions from SNP 135107 to 135707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,984 DEBUG Processing 452/525 atomic regions from SNP 135407 to 136007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,208 DEBUG Processing 453/525 atomic regions from SNP 135707 to 136307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,448 DEBUG Processing 454/525 atomic regions from SNP 136007 to 136607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,675 DEBUG Processing 455/525 atomic regions from SNP 136307 to 136907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,878 DEBUG Processing 456/525 atomic regions from SNP 136607 to 137207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,086 DEBUG Processing 457/525 atomic regions from SNP 136907 to 137507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,297 DEBUG Processing 458/525 atomic regions from SNP 137207 to 137807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,501 DEBUG Processing 459/525 atomic regions from SNP 137507 to 138107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,711 DEBUG Processing 460/525 atomic regions from SNP 137807 to 138407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,911 DEBUG Processing 461/525 atomic regions from SNP 138107 to 138707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,112 DEBUG Processing 462/525 atomic regions from SNP 138407 to 139007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,325 DEBUG Processing 463/525 atomic regions from SNP 138707 to 139307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,526 DEBUG Processing 464/525 atomic regions from SNP 139007 to 139607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,737 DEBUG Processing 465/525 atomic regions from SNP 139307 to 139907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,964 DEBUG Processing 466/525 atomic regions from SNP 139607 to 140207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,196 DEBUG Processing 467/525 atomic regions from SNP 139907 to 140507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,418 DEBUG Processing 468/525 atomic regions from SNP 140207 to 140807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,640 DEBUG Processing 469/525 atomic regions from SNP 140507 to 141107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,847 DEBUG Processing 470/525 atomic regions from SNP 140807 to 141407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,044 DEBUG Processing 471/525 atomic regions from SNP 141107 to 141707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,245 DEBUG Processing 472/525 atomic regions from SNP 141407 to 142007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,453 DEBUG Processing 473/525 atomic regions from SNP 141707 to 142307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,664 DEBUG Processing 474/525 atomic regions from SNP 142007 to 142607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,875 DEBUG Processing 475/525 atomic regions from SNP 142307 to 142907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,081 DEBUG Processing 476/525 atomic regions from SNP 142607 to 143207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,288 DEBUG Processing 477/525 atomic regions from SNP 142907 to 143507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,491 DEBUG Processing 478/525 atomic regions from SNP 143207 to 143807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,695 DEBUG Processing 479/525 atomic regions from SNP 143507 to 144107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,907 DEBUG Processing 480/525 atomic regions from SNP 143807 to 144407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,136 DEBUG Processing 481/525 atomic regions from SNP 144107 to 144707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,355 DEBUG Processing 482/525 atomic regions from SNP 144407 to 145007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,566 DEBUG Processing 483/525 atomic regions from SNP 144707 to 145307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,767 DEBUG Processing 484/525 atomic regions from SNP 145007 to 145607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,971 DEBUG Processing 485/525 atomic regions from SNP 145307 to 145907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,181 DEBUG Processing 486/525 atomic regions from SNP 145607 to 146207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,384 DEBUG Processing 487/525 atomic regions from SNP 145907 to 146507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,585 DEBUG Processing 488/525 atomic regions from SNP 146207 to 146807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,786 DEBUG Processing 489/525 atomic regions from SNP 146507 to 147107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,998 DEBUG Processing 490/525 atomic regions from SNP 146807 to 147407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,211 DEBUG Processing 491/525 atomic regions from SNP 147107 to 147707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,418 DEBUG Processing 492/525 atomic regions from SNP 147407 to 148007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,629 DEBUG Processing 493/525 atomic regions from SNP 147707 to 148307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,851 DEBUG Processing 494/525 atomic regions from SNP 148007 to 148607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,080 DEBUG Processing 495/525 atomic regions from SNP 148307 to 148907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,299 DEBUG Processing 496/525 atomic regions from SNP 148607 to 149207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,513 DEBUG Processing 497/525 atomic regions from SNP 148907 to 149507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,725 DEBUG Processing 498/525 atomic regions from SNP 149207 to 149807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,937 DEBUG Processing 499/525 atomic regions from SNP 149507 to 150107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,152 DEBUG Processing 500/525 atomic regions from SNP 149807 to 150407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,366 DEBUG Processing 501/525 atomic regions from SNP 150107 to 150707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,598 DEBUG Processing 502/525 atomic regions from SNP 150407 to 151007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,808 DEBUG Processing 503/525 atomic regions from SNP 150707 to 151307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,022 DEBUG Processing 504/525 atomic regions from SNP 151007 to 151607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,235 DEBUG Processing 505/525 atomic regions from SNP 151307 to 151907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,448 DEBUG Processing 506/525 atomic regions from SNP 151607 to 152207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,660 DEBUG Processing 507/525 atomic regions from SNP 151907 to 152507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,881 DEBUG Processing 508/525 atomic regions from SNP 152207 to 152807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,097 DEBUG Processing 509/525 atomic regions from SNP 152507 to 153107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,313 DEBUG Processing 510/525 atomic regions from SNP 152807 to 153407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,532 DEBUG Processing 511/525 atomic regions from SNP 153107 to 153707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,746 DEBUG Processing 512/525 atomic regions from SNP 153407 to 154007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,959 DEBUG Processing 513/525 atomic regions from SNP 153707 to 154307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,175 DEBUG Processing 514/525 atomic regions from SNP 154007 to 154607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,395 DEBUG Processing 515/525 atomic regions from SNP 154307 to 154907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,607 DEBUG Processing 516/525 atomic regions from SNP 154607 to 155207 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,822 DEBUG Processing 517/525 atomic regions from SNP 154907 to 155507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,031 DEBUG Processing 518/525 atomic regions from SNP 155207 to 155807 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,238 DEBUG Processing 519/525 atomic regions from SNP 155507 to 156107 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,449 DEBUG Processing 520/525 atomic regions from SNP 155807 to 156407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,666 DEBUG Processing 521/525 atomic regions from SNP 156107 to 156707 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,877 DEBUG Processing 522/525 atomic regions from SNP 156407 to 157007 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,085 DEBUG Processing 523/525 atomic regions from SNP 156707 to 157307 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,293 DEBUG Processing 524/525 atomic regions from SNP 157007 to 157607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,502 DEBUG Processing 525/525 atomic regions from SNP 157307 to 157907 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,638 DEBUG Unique SNPs positions in subchromosome 1: 157908 2025-01-31 09:59:14,967 DEBUG Subchromosome time: 129.54403498605825, subchromosome SNPs: 157908 2025-01-31 09:59:14,967 DEBUG Estimated BADs: [1.73, 0.58, 1.73, 3.45, 1.73, 3.45, 1.73, 0.86] SNP counts: [25953, 2436, 27948, 3271, 43862, 2031, 44103, 8304] SNP IDs counts: [25953, 2436, 27948, 3271, 43862, 2031, 44103, 8304] Critical gap: 506136bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 17.68Mbp, 19.09Mbp, 34.62Mbp, 36.32Mbp, 60.59Mbp, 61.64Mbp, 85.62Mbp, 90.70Mbp] 2025-01-31 09:59:14,968 DEBUG chr18 time: 129.5447529059602 s 2025-01-31 09:59:15,079 DEBUG chr18: Fitting background model for 8 segments 2025-01-31 09:59:20,237 DEBUG Results of fit_background_model emitted. 2025-01-31 09:59:20,418 INFO Signal to noise fit: SPOT=0.08±0.04 2025-01-31 09:59:20,425 INFO Found 6 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 09:59:20,482 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:59:20,482 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 09:59:24,662 DEBUG chr11: Fitting background model for 1 segments 2025-01-31 09:59:24,857 DEBUG chr10: Fitting background model for 1 segments 2025-01-31 09:59:24,887 DEBUG chr8: Fitting background model for 1 segments 2025-01-31 09:59:25,297 DEBUG chr13: Fitting background model for 1 segments 2025-01-31 09:59:26,028 DEBUG chr7: Fitting background model for 2 segments 2025-01-31 09:59:29,591 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 09:59:29,676 INFO Signal to noise fit: SPOT=0.08±0.04 2025-01-31 09:59:29,684 INFO Found 3 outlier SPOT score segments at iteration 2. Refitting with approximated signal/noise constraint. 2025-01-31 09:59:29,721 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:59:29,722 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 09:59:34,227 DEBUG chr10: Fitting background model for 1 segments 2025-01-31 09:59:34,313 DEBUG chr13: Fitting background model for 1 segments 2025-01-31 09:59:35,195 DEBUG chr7: Fitting background model for 1 segments 2025-01-31 09:59:37,386 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 09:59:37,470 INFO Signal to noise fit: SPOT=0.08±0.04 2025-01-31 09:59:37,476 INFO Final SPOT score: 0.08±0.04. Refitted 6 segments. 2025-01-31 09:59:37,522 INFO Estimating per-bp parameters of background model 2025-01-31 09:59:37,529 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:59:37,530 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 09:59:43,242 DEBUG chr5:3002500-5872751: Successfully fit background model for 2,517,367 bp. Use segment r for 0 bp 2025-01-31 09:59:43,742 DEBUG chr3:3000000-8803751: Successfully fit background model for 5,023,671 bp. Use segment r for 0 bp 2025-01-31 09:59:43,884 DEBUG chr3:8803751-10127751: Successfully fit background model for 1,211,152 bp. Use segment r for 0 bp 2025-01-31 09:59:44,792 DEBUG chr4:3050000-16311001: Successfully fit background model for 11,637,986 bp. Use segment r for 0 bp 2025-01-31 09:59:45,076 DEBUG chr4:16311001-19030751: Successfully fit background model for 2,350,404 bp. Use segment r for 0 bp 2025-01-31 09:59:46,023 DEBUG chr5:5872751-20865751: Successfully fit background model for 11,954,045 bp. Use segment r for 337 bp 2025-01-31 09:59:46,109 DEBUG chr3:10127751-28573751: Successfully fit background model for 15,990,775 bp. Use segment r for 0 bp 2025-01-31 09:59:46,524 DEBUG chr2:3051000-24959751: Successfully fit background model for 19,886,065 bp. Use segment r for 0 bp 2025-01-31 09:59:46,732 DEBUG chr4:19030751-32691251: Successfully fit background model for 12,184,081 bp. Use segment r for 0 bp 2025-01-31 09:59:46,774 DEBUG chr3:28573751-34993751: Successfully fit background model for 5,874,799 bp. Use segment r for 0 bp 2025-01-31 09:59:46,973 DEBUG chr4:32691251-34913751: Successfully fit background model for 2,090,006 bp. Use segment r for 0 bp 2025-01-31 09:59:47,116 DEBUG chr5:20865751-30342751: Successfully fit background model for 8,605,487 bp. Use segment r for 0 bp 2025-01-31 09:59:47,524 DEBUG chr4:34913751-40039751: Successfully fit background model for 4,553,939 bp. Use segment r for 0 bp 2025-01-31 09:59:47,564 DEBUG chr3:34993751-42850501: Successfully fit background model for 7,155,030 bp. Use segment r for 0 bp 2025-01-31 09:59:47,713 DEBUG chr4:40039751-41857501: Successfully fit background model for 1,643,095 bp. Use segment r for 0 bp 2025-01-31 09:59:47,732 DEBUG chr5:30342751-36462751: Successfully fit background model for 5,871,603 bp. Use segment r for 0 bp 2025-01-31 09:59:47,829 DEBUG chr2:24959751-35505251: Successfully fit background model for 10,245,429 bp. Use segment r for 0 bp 2025-01-31 09:59:48,052 DEBUG chr3:42850501-48020251: Successfully fit background model for 4,566,698 bp. Use segment r for 0 bp 2025-01-31 09:59:48,070 DEBUG chr5:36462751-39737751: Successfully fit background model for 3,064,744 bp. Use segment r for 0 bp 2025-01-31 09:59:48,176 DEBUG chr3:48020251-49133251: Successfully fit background model for 996,070 bp. Use segment r for 0 bp 2025-01-31 09:59:48,276 DEBUG chr2:35505251-39868751: Successfully fit background model for 3,977,234 bp. Use segment r for 0 bp 2025-01-31 09:59:48,307 DEBUG chr4:42706000-48755251: Successfully fit background model for 5,739,194 bp. Use segment r for 0 bp 2025-01-31 09:59:48,330 DEBUG chr1:3000500-33372501: Successfully fit background model for 27,027,826 bp. Use segment r for 0 bp 2025-01-31 09:59:48,463 DEBUG chr3:49133251-52143251: Successfully fit background model for 2,749,939 bp. Use segment r for 0 bp 2025-01-31 09:59:48,604 DEBUG chr2:39868751-43115751: Successfully fit background model for 2,968,358 bp. Use segment r for 0 bp 2025-01-31 09:59:48,618 DEBUG chr4:48755251-51759251: Successfully fit background model for 2,648,529 bp. Use segment r for 0 bp 2025-01-31 09:59:48,782 DEBUG chrX:3055000-26910501: Successfully fit background model for 16,980,764 bp. Use segment r for 341 bp 2025-01-31 09:59:49,023 DEBUG chr1:33372501-39663251: Successfully fit background model for 5,996,698 bp. Use segment r for 0 bp 2025-01-31 09:59:49,362 DEBUG chr5:39737751-50828751: Successfully fit background model for 10,052,306 bp. Use segment r for 0 bp 2025-01-31 09:59:49,430 DEBUG chr1:39663251-44007251: Successfully fit background model for 4,146,260 bp. Use segment r for 0 bp 2025-01-31 09:59:49,719 DEBUG chr5:50828751-54522251: Successfully fit background model for 3,524,028 bp. Use segment r for 0 bp 2025-01-31 09:59:50,078 DEBUG chr4:51759251-64185001: Successfully fit background model for 10,014,921 bp. Use segment r for 0 bp 2025-01-31 09:59:50,201 DEBUG chrX:31132500-39462751: Successfully fit background model for 3,269,003 bp. Use segment r for 662 bp 2025-01-31 09:59:50,223 DEBUG chr1:44007251-52022251: Successfully fit background model for 6,982,241 bp. Use segment r for 0 bp 2025-01-31 09:59:50,641 DEBUG chr5:54522251-63188251: Successfully fit background model for 7,659,235 bp. Use segment r for 0 bp 2025-01-31 09:59:50,679 DEBUG chr3:52143251-71402001: Successfully fit background model for 17,396,322 bp. Use segment r for 0 bp 2025-01-31 09:59:51,150 DEBUG chr5:63188251-68392501: Successfully fit background model for 4,917,558 bp. Use segment r for 0 bp 2025-01-31 09:59:51,468 DEBUG chr5:68392501-71595751: Successfully fit background model for 2,802,250 bp. Use segment r for 0 bp 2025-01-31 09:59:51,513 DEBUG chr2:43115751-67589251: Successfully fit background model for 22,532,652 bp. Use segment r for 0 bp 2025-01-31 09:59:51,525 DEBUG chr3:71402001-79290251: Successfully fit background model for 7,017,095 bp. Use segment r for 0 bp 2025-01-31 09:59:51,967 DEBUG chr3:79290251-83964251: Successfully fit background model for 4,311,295 bp. Use segment r for 0 bp 2025-01-31 09:59:52,110 DEBUG chr4:64185001-81603251: Successfully fit background model for 15,423,714 bp. Use segment r for 0 bp 2025-01-31 09:59:52,173 DEBUG chr5:71595751-78103751: Successfully fit background model for 6,134,212 bp. Use segment r for 0 bp 2025-01-31 09:59:52,326 DEBUG chr3:83964251-87499751: Successfully fit background model for 3,362,543 bp. Use segment r for 0 bp 2025-01-31 09:59:52,604 DEBUG chr3:87499751-90361251: Successfully fit background model for 2,722,917 bp. Use segment r for 0 bp 2025-01-31 09:59:52,753 DEBUG chr1:52022251-73906251: Successfully fit background model for 20,323,797 bp. Use segment r for 0 bp 2025-01-31 09:59:52,873 DEBUG chr4:81603251-89508751: Successfully fit background model for 7,232,364 bp. Use segment r for 0 bp 2025-01-31 09:59:52,934 DEBUG chr1:73906251-75390751: Successfully fit background model for 1,385,294 bp. Use segment r for 0 bp 2025-01-31 09:59:53,015 DEBUG chr3:90361251-94346501: Successfully fit background model for 3,073,553 bp. Use segment r for 0 bp 2025-01-31 09:59:53,074 DEBUG chr2:67589251-80914751: Successfully fit background model for 12,712,815 bp. Use segment r for 0 bp 2025-01-31 09:59:53,191 DEBUG chr5:78103751-87895251: Successfully fit background model for 8,749,598 bp. Use segment r for 0 bp 2025-01-31 09:59:53,218 DEBUG chr4:89508751-92897751: Successfully fit background model for 2,970,471 bp. Use segment r for 0 bp 2025-01-31 09:59:53,284 DEBUG chr3:94346501-97007751: Successfully fit background model for 2,448,596 bp. Use segment r for 0 bp 2025-01-31 09:59:53,289 DEBUG chr2:80914751-82865251: Successfully fit background model for 1,718,515 bp. Use segment r for 0 bp 2025-01-31 09:59:53,560 DEBUG chr2:82865251-85570751: Successfully fit background model for 2,315,494 bp. Use segment r for 0 bp 2025-01-31 09:59:53,980 DEBUG chrX:39462751-71417251: Successfully fit background model for 26,584,524 bp. Use segment r for 0 bp 2025-01-31 09:59:53,992 DEBUG chr2:85570751-89706751: Successfully fit background model for 3,600,978 bp. Use segment r for 0 bp 2025-01-31 09:59:54,071 DEBUG chr1:75390751-84985251: Successfully fit background model for 8,834,226 bp. Use segment r for 0 bp 2025-01-31 09:59:54,091 DEBUG chr4:92897751-100938751: Successfully fit background model for 7,387,991 bp. Use segment r for 0 bp 2025-01-31 09:59:54,297 DEBUG chrX:71417251-74126251: Successfully fit background model for 2,282,600 bp. Use segment r for 0 bp 2025-01-31 09:59:54,649 DEBUG chr4:100938751-106803751: Successfully fit background model for 5,528,145 bp. Use segment r for 0 bp 2025-01-31 09:59:54,659 DEBUG chr3:97007751-108864751: Successfully fit background model for 11,003,702 bp. Use segment r for 0 bp 2025-01-31 09:59:54,787 DEBUG chr2:89706751-94878251: Successfully fit background model for 4,739,559 bp. Use segment r for 110 bp 2025-01-31 09:59:55,002 DEBUG chr4:106803751-110346251: Successfully fit background model for 3,356,872 bp. Use segment r for 0 bp 2025-01-31 09:59:55,105 DEBUG chr1:84985251-93653251: Successfully fit background model for 7,864,510 bp. Use segment r for 0 bp 2025-01-31 09:59:55,168 DEBUG chr4:110346251-111927751: Successfully fit background model for 1,400,815 bp. Use segment r for 0 bp 2025-01-31 09:59:55,374 DEBUG chr4:111927751-114011251: Successfully fit background model for 1,816,264 bp. Use segment r for 0 bp 2025-01-31 09:59:55,455 DEBUG chr2:94878251-101124501: Successfully fit background model for 5,208,421 bp. Use segment r for 0 bp 2025-01-31 09:59:55,672 DEBUG chr4:114011251-116986751: Successfully fit background model for 2,674,101 bp. Use segment r for 0 bp 2025-01-31 09:59:56,008 DEBUG chr3:108864751-121156251: Successfully fit background model for 10,946,669 bp. Use segment r for 0 bp 2025-01-31 09:59:56,117 DEBUG chr2:101124501-108093251: Successfully fit background model for 6,587,535 bp. Use segment r for 0 bp 2025-01-31 09:59:56,134 DEBUG chr3:121156251-122239251: Successfully fit background model for 1,058,235 bp. Use segment r for 0 bp 2025-01-31 09:59:56,295 DEBUG chr1:93653251-104310251: Successfully fit background model for 9,248,735 bp. Use segment r for 0 bp 2025-01-31 09:59:56,647 DEBUG chr1:104310251-107855251: Successfully fit background model for 3,238,357 bp. Use segment r for 0 bp 2025-01-31 09:59:56,768 DEBUG chr2:108093251-115127251: Successfully fit background model for 6,327,972 bp. Use segment r for 0 bp 2025-01-31 09:59:57,156 DEBUG chr5:87895251-110327751: Successfully fit background model for 18,579,458 bp. Use segment r for 2,347 bp 2025-01-31 09:59:57,254 DEBUG chrX:74126251-99041251: Successfully fit background model for 20,926,571 bp. Use segment r for 0 bp 2025-01-31 09:59:57,598 DEBUG chr2:115127251-123024751: Successfully fit background model for 7,481,883 bp. Use segment r for 0 bp 2025-01-31 09:59:57,680 DEBUG chr5:110327751-115326251: Successfully fit background model for 4,869,665 bp. Use segment r for 0 bp 2025-01-31 09:59:57,700 DEBUG chr2:123024751-123878751: Successfully fit background model for 775,370 bp. Use segment r for 0 bp 2025-01-31 09:59:57,708 DEBUG chrX:99041251-103431751: Successfully fit background model for 3,975,360 bp. Use segment r for 0 bp 2025-01-31 09:59:57,717 DEBUG chr1:107855251-116812251: Successfully fit background model for 7,914,640 bp. Use segment r for 0 bp 2025-01-31 09:59:57,892 DEBUG chr3:122239251-137125251: Successfully fit background model for 13,785,275 bp. Use segment r for 0 bp 2025-01-31 09:59:58,111 DEBUG chr3:137125251-139117751: Successfully fit background model for 1,865,298 bp. Use segment r for 0 bp 2025-01-31 09:59:58,149 DEBUG chr5:115326251-120332251: Successfully fit background model for 4,904,010 bp. Use segment r for 0 bp 2025-01-31 09:59:58,419 DEBUG chr3:139117751-142071251: Successfully fit background model for 2,694,241 bp. Use segment r for 0 bp 2025-01-31 09:59:58,597 DEBUG chr4:116986751-141719751: Successfully fit background model for 23,057,126 bp. Use segment r for 0 bp 2025-01-31 09:59:58,649 DEBUG chr5:120332251-125278501: Successfully fit background model for 4,727,642 bp. Use segment r for 0 bp 2025-01-31 09:59:58,913 DEBUG chrX:103431751-113247501: Successfully fit background model for 8,343,797 bp. Use segment r for 0 bp 2025-01-31 09:59:58,956 DEBUG chr3:142071251-147132501: Successfully fit background model for 4,805,776 bp. Use segment r for 0 bp 2025-01-31 09:59:59,305 DEBUG chr4:141719751-147900251: Successfully fit background model for 3,948,550 bp. Use segment r for 0 bp 2025-01-31 09:59:59,351 DEBUG chr2:123878751-137693001: Successfully fit background model for 13,061,659 bp. Use segment r for 0 bp 2025-01-31 09:59:59,374 DEBUG chr3:147132501-151599501: Successfully fit background model for 4,234,944 bp. Use segment r for 0 bp 2025-01-31 09:59:59,399 DEBUG chr1:116812251-130985251: Successfully fit background model for 13,040,419 bp. Use segment r for 0 bp 2025-01-31 09:59:59,506 DEBUG chr2:137693001-139015751: Successfully fit background model for 1,217,444 bp. Use segment r for 0 bp 2025-01-31 09:59:59,688 DEBUG chr3:151599501-154849251: Successfully fit background model for 3,066,208 bp. Use segment r for 0 bp 2025-01-31 09:59:59,778 DEBUG chr5:125278501-134763251: Successfully fit background model for 9,053,256 bp. Use segment r for 0 bp 2025-01-31 09:59:59,884 DEBUG chr1:130985251-136008751: Successfully fit background model for 4,895,708 bp. Use segment r for 0 bp 2025-01-31 10:00:00,228 DEBUG chr3:154849251-160039680: Successfully fit background model for 4,571,859 bp. Use segment r for 0 bp 2025-01-31 10:00:00,231 DEBUG chr1:136008751-139586751: Successfully fit background model for 3,368,801 bp. Use segment r for 0 bp 2025-01-31 10:00:00,262 DEBUG chr4:147900251-156508116: Successfully fit background model for 8,191,510 bp. Use segment r for 0 bp 2025-01-31 10:00:00,612 DEBUG chr5:134763251-142831251: Successfully fit background model for 7,646,183 bp. Use segment r for 0 bp 2025-01-31 10:00:00,917 DEBUG chrX:113247501-124247501: Successfully fit background model for 8,617,653 bp. Use segment r for 4,354 bp 2025-01-31 10:00:01,081 DEBUG chr2:139015751-152310251: Successfully fit background model for 12,083,649 bp. Use segment r for 0 bp 2025-01-31 10:00:01,377 DEBUG chr1:139586751-149422751: Successfully fit background model for 8,525,425 bp. Use segment r for 0 bp 2025-01-31 10:00:01,507 DEBUG chr5:142831251-151834684: Successfully fit background model for 8,212,652 bp. Use segment r for 0 bp 2025-01-31 10:00:01,650 DEBUG chr2:152310251-158080751: Successfully fit background model for 5,540,152 bp. Use segment r for 0 bp 2025-01-31 10:00:01,968 DEBUG chr1:149422751-154941751: Successfully fit background model for 5,182,633 bp. Use segment r for 0 bp 2025-01-31 10:00:02,110 DEBUG chrX:126015000-133925751: Successfully fit background model for 6,808,097 bp. Use segment r for 50 bp 2025-01-31 10:00:02,148 DEBUG chr1:154941751-156582251: Successfully fit background model for 1,533,536 bp. Use segment r for 0 bp 2025-01-31 10:00:02,229 DEBUG chrX:133925751-134920751: Successfully fit background model for 948,624 bp. Use segment r for 0 bp 2025-01-31 10:00:02,703 DEBUG chr2:158080751-167026751: Successfully fit background model for 8,589,177 bp. Use segment r for 0 bp 2025-01-31 10:00:02,819 DEBUG chr2:167026751-167972251: Successfully fit background model for 910,745 bp. Use segment r for 0 bp 2025-01-31 10:00:03,590 DEBUG chr2:167972251-175179501: Successfully fit background model for 6,862,582 bp. Use segment r for 0 bp 2025-01-31 10:00:03,883 DEBUG chr2:176700000-179670751: Successfully fit background model for 1,782,879 bp. Use segment r for 0 bp 2025-01-31 10:00:04,022 DEBUG chrX:134920751-150382751: Successfully fit background model for 11,482,344 bp. Use segment r for 0 bp 2025-01-31 10:00:04,120 DEBUG chr2:179670751-182113224: Successfully fit background model for 2,250,027 bp. Use segment r for 0 bp 2025-01-31 10:00:04,256 DEBUG chrX:150382751-152608751: Successfully fit background model for 1,945,296 bp. Use segment r for 0 bp 2025-01-31 10:00:04,980 DEBUG chr1:156582251-179475251: Successfully fit background model for 21,308,907 bp. Use segment r for 0 bp 2025-01-31 10:00:05,248 DEBUG chrX:152608751-162126751: Successfully fit background model for 8,352,483 bp. Use segment r for 0 bp 2025-01-31 10:00:05,635 DEBUG chr1:179475251-185446751: Successfully fit background model for 5,613,933 bp. Use segment r for 0 bp 2025-01-31 10:00:05,996 DEBUG chrX:162126751-169967751: Successfully fit background model for 7,161,535 bp. Use segment r for 0 bp 2025-01-31 10:00:06,108 DEBUG chr1:185446751-190692751: Successfully fit background model for 5,049,389 bp. Use segment r for 0 bp 2025-01-31 10:00:06,119 DEBUG chrX:169967751-171031299: Successfully fit background model for 16,971 bp. Use segment r for 0 bp 2025-01-31 10:00:06,245 DEBUG chr1:190692751-191962751: Successfully fit background model for 1,224,201 bp. Use segment r for 0 bp 2025-01-31 10:00:06,584 DEBUG chr1:191962751-195471971: Successfully fit background model for 3,157,915 bp. Use segment r for 0 bp 2025-01-31 10:01:25,474 DEBUG chr6:3050000-9516501: Successfully fit background model for 5,749,890 bp. Use segment r for 0 bp 2025-01-31 10:01:27,827 DEBUG chr7:3004500-7423251: Successfully fit background model for 3,463,156 bp. Use segment r for 0 bp 2025-01-31 10:01:28,807 DEBUG chr10:3101500-15044251: Successfully fit background model for 10,865,128 bp. Use segment r for 0 bp 2025-01-31 10:01:29,001 DEBUG chr10:15044251-16670751: Successfully fit background model for 1,413,630 bp. Use segment r for 0 bp 2025-01-31 10:01:29,278 DEBUG chr6:9516501-28324751: Successfully fit background model for 16,656,238 bp. Use segment r for 0 bp 2025-01-31 10:01:29,552 DEBUG chr6:28324751-30082251: Successfully fit background model for 1,710,318 bp. Use segment r for 0 bp 2025-01-31 10:01:30,454 DEBUG chr7:7423251-14727251: Successfully fit background model for 3,611,924 bp. Use segment r for 1,597 bp 2025-01-31 10:01:30,754 DEBUG chr7:14727251-17222251: Successfully fit background model for 1,688,226 bp. Use segment r for 0 bp 2025-01-31 10:01:31,135 DEBUG chr7:17222251-19009251: Successfully fit background model for 1,282,226 bp. Use segment r for 2,407 bp 2025-01-31 10:01:31,325 DEBUG chr7:19009251-20102001: Successfully fit background model for 1,019,020 bp. Use segment r for 251 bp 2025-01-31 10:01:31,591 DEBUG chr7:22785500-24296251: Successfully fit background model for 835,995 bp. Use segment r for 7,850 bp 2025-01-31 10:01:31,792 DEBUG chr7:24296251-25962251: Successfully fit background model for 1,561,811 bp. Use segment r for 0 bp 2025-01-31 10:01:32,030 DEBUG chr7:25962251-27151751: Successfully fit background model for 928,015 bp. Use segment r for 0 bp 2025-01-31 10:01:32,522 DEBUG chr7:27151751-31146251: Successfully fit background model for 3,763,619 bp. Use segment r for 0 bp 2025-01-31 10:01:32,601 DEBUG chr6:30082251-44128251: Successfully fit background model for 13,037,653 bp. Use segment r for 0 bp 2025-01-31 10:01:32,786 DEBUG chr6:44128251-45672751: Successfully fit background model for 1,395,786 bp. Use segment r for 0 bp 2025-01-31 10:01:32,880 DEBUG chr7:31146251-33345751: Successfully fit background model for 693,501 bp. Use segment r for 599 bp 2025-01-31 10:01:33,046 DEBUG chr10:16670751-33081251: Successfully fit background model for 14,969,307 bp. Use segment r for 0 bp 2025-01-31 10:01:33,364 DEBUG chr10:33081251-35844251: Successfully fit background model for 2,481,966 bp. Use segment r for 0 bp 2025-01-31 10:01:34,505 DEBUG chr7:33345751-41672001: Successfully fit background model for 6,947,712 bp. Use segment r for 0 bp 2025-01-31 10:01:34,794 DEBUG chr7:41672001-44299751: Successfully fit background model for 2,184,802 bp. Use segment r for 0 bp 2025-01-31 10:01:35,027 DEBUG chr7:44299751-45694751: Successfully fit background model for 1,369,394 bp. Use segment r for 0 bp 2025-01-31 10:01:36,621 DEBUG chr7:45694751-52210251: Successfully fit background model for 5,865,665 bp. Use segment r for 0 bp 2025-01-31 10:01:37,049 DEBUG chr7:52210251-55053251: Successfully fit background model for 2,504,924 bp. Use segment r for 0 bp 2025-01-31 10:01:37,593 DEBUG chr10:35844251-47009251: Successfully fit background model for 10,411,480 bp. Use segment r for 0 bp 2025-01-31 10:01:37,786 DEBUG chr7:55053251-59285751: Successfully fit background model for 3,723,373 bp. Use segment r for 0 bp 2025-01-31 10:01:37,868 DEBUG chr6:45672751-61661251: Successfully fit background model for 14,626,647 bp. Use segment r for 0 bp 2025-01-31 10:01:38,392 DEBUG chr7:59285751-62786251: Successfully fit background model for 2,681,823 bp. Use segment r for 0 bp 2025-01-31 10:01:39,301 DEBUG chr7:62786251-69005751: Successfully fit background model for 5,852,616 bp. Use segment r for 0 bp 2025-01-31 10:01:39,349 DEBUG chr10:47009251-55584251: Successfully fit background model for 7,600,171 bp. Use segment r for 0 bp 2025-01-31 10:01:39,415 DEBUG chr6:61661251-70723751: Successfully fit background model for 7,761,014 bp. Use segment r for 0 bp 2025-01-31 10:01:39,532 DEBUG chr7:69005751-71292251: Successfully fit background model for 2,167,647 bp. Use segment r for 0 bp 2025-01-31 10:01:39,606 DEBUG chr6:70723751-72463251: Successfully fit background model for 1,678,444 bp. Use segment r for 0 bp 2025-01-31 10:01:39,765 DEBUG chr10:55584251-59843251: Successfully fit background model for 3,568,219 bp. Use segment r for 0 bp 2025-01-31 10:01:39,819 DEBUG chr6:72463251-74309251: Successfully fit background model for 1,697,109 bp. Use segment r for 0 bp 2025-01-31 10:01:40,012 DEBUG chr10:59843251-62306251: Successfully fit background model for 2,410,831 bp. Use segment r for 0 bp 2025-01-31 10:01:40,340 DEBUG chr6:74309251-79504751: Successfully fit background model for 4,681,091 bp. Use segment r for 0 bp 2025-01-31 10:01:40,695 DEBUG chr6:79504751-82996751: Successfully fit background model for 3,173,103 bp. Use segment r for 0 bp 2025-01-31 10:01:41,081 DEBUG chr7:71292251-84892751: Successfully fit background model for 12,741,244 bp. Use segment r for 0 bp 2025-01-31 10:01:41,454 DEBUG chr7:84892751-88559251: Successfully fit background model for 3,259,151 bp. Use segment r for 0 bp 2025-01-31 10:01:41,682 DEBUG chr7:88559251-90743251: Successfully fit background model for 1,978,637 bp. Use segment r for 0 bp 2025-01-31 10:01:41,745 DEBUG chr6:82996751-91824751: Successfully fit background model for 8,342,662 bp. Use segment r for 0 bp 2025-01-31 10:01:41,924 DEBUG chr7:90743251-93241251: Successfully fit background model for 2,307,380 bp. Use segment r for 0 bp 2025-01-31 10:01:42,120 DEBUG chr7:93241251-95186251: Successfully fit background model for 1,738,892 bp. Use segment r for 0 bp 2025-01-31 10:01:42,403 DEBUG chr10:62306251-75545251: Successfully fit background model for 12,206,199 bp. Use segment r for 72,171 bp 2025-01-31 10:01:42,822 DEBUG chr10:75545251-79668251: Successfully fit background model for 3,827,733 bp. Use segment r for 0 bp 2025-01-31 10:01:43,012 DEBUG chr10:79668251-81534751: Successfully fit background model for 1,834,254 bp. Use segment r for 0 bp 2025-01-31 10:01:43,146 DEBUG chr6:91824751-103523251: Successfully fit background model for 11,053,578 bp. Use segment r for 0 bp 2025-01-31 10:01:43,419 DEBUG chr7:95186251-106328751: Successfully fit background model for 9,927,944 bp. Use segment r for 0 bp 2025-01-31 10:01:43,635 DEBUG chr7:106328751-108423001: Successfully fit background model for 1,828,961 bp. Use segment r for 0 bp 2025-01-31 10:01:43,904 DEBUG chr6:103523251-111062751: Successfully fit background model for 6,827,425 bp. Use segment r for 0 bp 2025-01-31 10:01:44,118 DEBUG chr6:111062751-113075251: Successfully fit background model for 1,846,471 bp. Use segment r for 0 bp 2025-01-31 10:01:44,201 DEBUG chr8:3070000-4715001: Successfully fit background model for 1,438,256 bp. Use segment r for 0 bp 2025-01-31 10:01:44,709 DEBUG chr8:4715001-9565751: Successfully fit background model for 4,392,538 bp. Use segment r for 0 bp 2025-01-31 10:01:45,296 DEBUG chr10:81534751-100755251: Successfully fit background model for 17,665,726 bp. Use segment r for 0 bp 2025-01-31 10:01:45,452 DEBUG chr14:3006500-5131001: Successfully fit background model for 74,199 bp. Use segment r for 572 bp 2025-01-31 10:01:45,520 DEBUG chr6:113075251-125141251: Successfully fit background model for 10,870,734 bp. Use segment r for 0 bp 2025-01-31 10:01:45,696 DEBUG chr10:100755251-104726251: Successfully fit background model for 3,585,907 bp. Use segment r for 0 bp 2025-01-31 10:01:45,744 DEBUG chr7:108423001-126687251: Successfully fit background model for 17,398,933 bp. Use segment r for 0 bp 2025-01-31 10:01:45,865 DEBUG chr7:126687251-127610251: Successfully fit background model for 901,362 bp. Use segment r for 0 bp 2025-01-31 10:01:45,993 DEBUG chr6:125141251-129828751: Successfully fit background model for 4,428,315 bp. Use segment r for 0 bp 2025-01-31 10:01:46,317 DEBUG chr6:129828751-132970751: Successfully fit background model for 2,528,685 bp. Use segment r for 0 bp 2025-01-31 10:01:46,747 DEBUG chr10:104726251-113460751: Successfully fit background model for 8,047,857 bp. Use segment r for 0 bp 2025-01-31 10:01:47,391 DEBUG chr7:127610251-140922751: Successfully fit background model for 12,701,464 bp. Use segment r for 0 bp 2025-01-31 10:01:47,868 DEBUG chr7:140922751-145441459: Successfully fit background model for 4,233,065 bp. Use segment r for 0 bp 2025-01-31 10:01:48,231 DEBUG chr10:113460751-124107751: Successfully fit background model for 9,989,509 bp. Use segment r for 0 bp 2025-01-31 10:01:48,541 DEBUG chr10:124107751-126923251: Successfully fit background model for 2,620,591 bp. Use segment r for 0 bp 2025-01-31 10:01:48,603 DEBUG chr8:9565751-29170751: Successfully fit background model for 16,839,375 bp. Use segment r for 25,086 bp 2025-01-31 10:01:48,685 DEBUG chr6:132970751-149736546: Successfully fit background model for 15,486,974 bp. Use segment r for 0 bp 2025-01-31 10:01:48,731 DEBUG chr10:126923251-128664251: Successfully fit background model for 1,690,498 bp. Use segment r for 0 bp 2025-01-31 10:01:48,773 DEBUG chr8:29170751-30423251: Successfully fit background model for 1,073,578 bp. Use segment r for 0 bp 2025-01-31 10:01:48,943 DEBUG chr10:128664251-130694993: Successfully fit background model for 1,636,462 bp. Use segment r for 0 bp 2025-01-31 10:01:49,817 DEBUG chr8:30423251-37039251: Successfully fit background model for 6,217,956 bp. Use segment r for 0 bp 2025-01-31 10:01:50,559 DEBUG chr8:37039251-42757251: Successfully fit background model for 5,084,109 bp. Use segment r for 0 bp 2025-01-31 10:01:53,263 DEBUG chr8:42757251-49392251: Successfully fit background model for 6,167,739 bp. Use segment r for 0 bp 2025-01-31 10:01:53,929 DEBUG chr8:49392251-54041251: Successfully fit background model for 4,229,434 bp. Use segment r for 0 bp 2025-01-31 10:01:55,729 DEBUG chr14:5838000-29965751: Successfully fit background model for 20,361,051 bp. Use segment r for 483 bp 2025-01-31 10:01:56,424 DEBUG chr14:29965751-34483751: Successfully fit background model for 4,382,358 bp. Use segment r for 0 bp 2025-01-31 10:01:59,233 DEBUG chr8:54041251-70013501: Successfully fit background model for 13,926,186 bp. Use segment r for 0 bp 2025-01-31 10:01:59,494 DEBUG chr8:70013501-71390751: Successfully fit background model for 1,237,276 bp. Use segment r for 0 bp 2025-01-31 10:02:06,621 DEBUG chr14:34483751-51821251: Successfully fit background model for 13,271,620 bp. Use segment r for 5 bp 2025-01-31 10:02:08,794 DEBUG chr14:51821251-65288251: Successfully fit background model for 12,059,098 bp. Use segment r for 0 bp 2025-01-31 10:02:09,861 DEBUG chr9:3002500-13440751: Successfully fit background model for 9,064,643 bp. Use segment r for 0 bp 2025-01-31 10:02:10,095 DEBUG chr9:13440751-15383751: Successfully fit background model for 1,851,993 bp. Use segment r for 0 bp 2025-01-31 10:02:10,349 DEBUG chr8:71390751-96494251: Successfully fit background model for 23,398,426 bp. Use segment r for 5,461 bp 2025-01-31 10:02:10,755 DEBUG chr9:15383751-20509751: Successfully fit background model for 4,515,662 bp. Use segment r for 0 bp 2025-01-31 10:02:10,911 DEBUG chr9:20509751-21923751: Successfully fit background model for 1,361,551 bp. Use segment r for 0 bp 2025-01-31 10:02:11,152 DEBUG chr8:96494251-102947251: Successfully fit background model for 5,900,137 bp. Use segment r for 0 bp 2025-01-31 10:02:11,404 DEBUG chr8:102947251-105288251: Successfully fit background model for 2,152,333 bp. Use segment r for 0 bp 2025-01-31 10:02:11,599 DEBUG chr8:105288251-107201751: Successfully fit background model for 1,849,312 bp. Use segment r for 0 bp 2025-01-31 10:02:11,700 DEBUG chr14:65288251-81055751: Successfully fit background model for 14,461,558 bp. Use segment r for 0 bp 2025-01-31 10:02:12,184 DEBUG chr14:81055751-85625251: Successfully fit background model for 4,082,656 bp. Use segment r for 0 bp 2025-01-31 10:02:12,493 DEBUG chr14:85625251-88499751: Successfully fit background model for 2,599,602 bp. Use segment r for 0 bp 2025-01-31 10:02:13,830 DEBUG chr9:21923751-37978251: Successfully fit background model for 14,993,218 bp. Use segment r for 0 bp 2025-01-31 10:02:14,011 DEBUG chr9:37978251-39556251: Successfully fit background model for 1,396,695 bp. Use segment r for 0 bp 2025-01-31 10:02:14,504 DEBUG chr14:88499751-97989751: Successfully fit background model for 8,637,171 bp. Use segment r for 0 bp 2025-01-31 10:02:14,680 DEBUG chr8:107201751-116862251: Successfully fit background model for 9,063,985 bp. Use segment r for 284,020 bp 2025-01-31 10:02:14,939 DEBUG chr8:116862251-119417751: Successfully fit background model for 2,481,329 bp. Use segment r for 0 bp 2025-01-31 10:02:15,516 DEBUG chr8:119417751-124354751: Successfully fit background model for 4,720,705 bp. Use segment r for 0 bp 2025-01-31 10:02:15,686 DEBUG chr14:97989751-106502751: Successfully fit background model for 7,830,645 bp. Use segment r for 0 bp 2025-01-31 10:02:15,992 DEBUG chr8:124354751-129401213: Successfully fit background model for 4,679,416 bp. Use segment r for 0 bp 2025-01-31 10:02:16,417 DEBUG chr14:106502751-113851751: Successfully fit background model for 6,641,613 bp. Use segment r for 0 bp 2025-01-31 10:02:17,046 DEBUG chr9:39556251-56712251: Successfully fit background model for 16,433,024 bp. Use segment r for 0 bp 2025-01-31 10:02:17,822 DEBUG chr14:113851751-124902244: Successfully fit background model for 10,004,644 bp. Use segment r for 0 bp 2025-01-31 10:02:17,978 DEBUG chr9:56712251-65345751: Successfully fit background model for 8,410,227 bp. Use segment r for 0 bp 2025-01-31 10:02:21,001 DEBUG chr9:65345751-80983751: Successfully fit background model for 14,723,484 bp. Use segment r for 0 bp 2025-01-31 10:02:23,512 DEBUG chr9:80983751-93735251: Successfully fit background model for 11,130,641 bp. Use segment r for 0 bp 2025-01-31 10:02:26,568 DEBUG chr9:93735251-107246751: Successfully fit background model for 12,852,082 bp. Use segment r for 0 bp 2025-01-31 10:02:26,748 DEBUG chr9:107246751-108808751: Successfully fit background model for 1,530,345 bp. Use segment r for 0 bp 2025-01-31 10:02:28,384 DEBUG chr9:108808751-124595110: Successfully fit background model for 14,519,321 bp. Use segment r for 0 bp 2025-01-31 10:03:18,528 DEBUG chr11:3100500-3192251: Successfully fit background model for 72,963 bp. Use segment r for 0 bp 2025-01-31 10:03:18,893 DEBUG chr11:3192251-6687001: Successfully fit background model for 3,352,034 bp. Use segment r for 0 bp 2025-01-31 10:03:19,547 DEBUG chr11:6687001-12685251: Successfully fit background model for 5,389,966 bp. Use segment r for 0 bp 2025-01-31 10:03:20,116 DEBUG chr11:12685251-18651251: Successfully fit background model for 5,320,698 bp. Use segment r for 0 bp 2025-01-31 10:03:20,713 DEBUG chr11:18651251-24879001: Successfully fit background model for 5,873,731 bp. Use segment r for 0 bp 2025-01-31 10:03:21,061 DEBUG chr11:24879001-28365251: Successfully fit background model for 3,087,607 bp. Use segment r for 0 bp 2025-01-31 10:03:22,012 DEBUG chr11:28365251-36626751: Successfully fit background model for 7,702,397 bp. Use segment r for 0 bp 2025-01-31 10:03:22,698 DEBUG chr11:36626751-43492251: Successfully fit background model for 6,344,656 bp. Use segment r for 0 bp 2025-01-31 10:03:25,841 DEBUG chr11:43492251-69012251: Successfully fit background model for 24,134,551 bp. Use segment r for 0 bp 2025-01-31 10:03:26,047 DEBUG chr11:69012251-70504751: Successfully fit background model for 1,456,646 bp. Use segment r for 0 bp 2025-01-31 10:03:28,358 DEBUG chr13:3000500-23396251: Successfully fit background model for 17,751,551 bp. Use segment r for 0 bp 2025-01-31 10:03:28,501 DEBUG chr13:23396251-24486251: Successfully fit background model for 1,036,311 bp. Use segment r for 0 bp 2025-01-31 10:03:28,516 DEBUG chr11:70504751-90838251: Successfully fit background model for 19,420,380 bp. Use segment r for 0 bp 2025-01-31 10:03:28,765 DEBUG chr13:24486251-26828751: Successfully fit background model for 2,144,245 bp. Use segment r for 0 bp 2025-01-31 10:03:28,772 DEBUG chr11:90838251-93032001: Successfully fit background model for 2,011,150 bp. Use segment r for 0 bp 2025-01-31 10:03:28,858 DEBUG chr13:26828751-27689751: Successfully fit background model for 770,797 bp. Use segment r for 0 bp 2025-01-31 10:03:29,173 DEBUG chr11:93032001-96822251: Successfully fit background model for 3,675,751 bp. Use segment r for 0 bp 2025-01-31 10:03:29,722 DEBUG chr11:96822251-102189751: Successfully fit background model for 5,203,465 bp. Use segment r for 0 bp 2025-01-31 10:03:29,867 DEBUG chr15:3050500-4934751: Successfully fit background model for 1,598,702 bp. Use segment r for 0 bp 2025-01-31 10:03:30,709 DEBUG chr11:102189751-110932501: Successfully fit background model for 8,406,985 bp. Use segment r for 0 bp 2025-01-31 10:03:30,791 DEBUG chr12:3000500-37179751: Successfully fit background model for 27,782,580 bp. Use segment r for 0 bp 2025-01-31 10:03:30,861 DEBUG chr11:110932501-112232751: Successfully fit background model for 1,245,511 bp. Use segment r for 0 bp 2025-01-31 10:03:30,983 DEBUG chr15:4934751-13471751: Successfully fit background model for 7,859,423 bp. Use segment r for 0 bp 2025-01-31 10:03:31,209 DEBUG chr11:112232751-115750751: Successfully fit background model for 3,399,483 bp. Use segment r for 0 bp 2025-01-31 10:03:31,866 DEBUG chr11:115750751-122082543: Successfully fit background model for 6,032,031 bp. Use segment r for 0 bp 2025-01-31 10:03:32,663 DEBUG chr15:13471751-27216251: Successfully fit background model for 12,342,953 bp. Use segment r for 0 bp 2025-01-31 10:03:32,742 DEBUG chr15:27216251-27714251: Successfully fit background model for 465,122 bp. Use segment r for 0 bp 2025-01-31 10:03:32,968 DEBUG chr12:37179751-48697251: Successfully fit background model for 10,291,276 bp. Use segment r for 133,799 bp 2025-01-31 10:03:33,133 DEBUG chr15:27714251-31103751: Successfully fit background model for 3,082,797 bp. Use segment r for 0 bp 2025-01-31 10:03:34,336 DEBUG chr16:3092500-17042751: Successfully fit background model for 12,718,329 bp. Use segment r for 0 bp 2025-01-31 10:03:34,429 DEBUG chr12:48697251-60531251: Successfully fit background model for 10,616,880 bp. Use segment r for 0 bp 2025-01-31 10:03:34,489 DEBUG chr16:17042751-18279751: Successfully fit background model for 1,194,360 bp. Use segment r for 0 bp 2025-01-31 10:03:34,855 DEBUG chr15:31103751-45149751: Successfully fit background model for 12,762,929 bp. Use segment r for 0 bp 2025-01-31 10:03:35,149 DEBUG chr12:60531251-67793751: Successfully fit background model for 6,496,774 bp. Use segment r for 0 bp 2025-01-31 10:03:35,174 DEBUG chr15:45149751-48184251: Successfully fit background model for 2,717,669 bp. Use segment r for 0 bp 2025-01-31 10:03:36,349 DEBUG chr15:48184251-57492251: Successfully fit background model for 8,458,184 bp. Use segment r for 0 bp 2025-01-31 10:03:36,557 DEBUG chr12:67793751-79872251: Successfully fit background model for 11,371,477 bp. Use segment r for 0 bp 2025-01-31 10:03:37,010 DEBUG chr16:18279751-39370251: Successfully fit background model for 19,858,618 bp. Use segment r for 0 bp 2025-01-31 10:03:37,338 DEBUG chr12:79872251-86888251: Successfully fit background model for 6,716,982 bp. Use segment r for 0 bp 2025-01-31 10:03:37,546 DEBUG chr13:27689751-73201251: Successfully fit background model for 40,680,063 bp. Use segment r for 28,493 bp 2025-01-31 10:03:37,707 DEBUG chr13:73201251-73970251: Successfully fit background model for 755,491 bp. Use segment r for 0 bp 2025-01-31 10:03:37,809 DEBUG chr15:57492251-69481251: Successfully fit background model for 11,043,672 bp. Use segment r for 0 bp 2025-01-31 10:03:37,929 DEBUG chr12:86888251-92772251: Successfully fit background model for 5,073,655 bp. Use segment r for 0 bp 2025-01-31 10:03:37,985 DEBUG chr15:69481251-70987751: Successfully fit background model for 1,381,614 bp. Use segment r for 0 bp 2025-01-31 10:03:38,001 DEBUG chr13:73970251-76515751: Successfully fit background model for 2,284,834 bp. Use segment r for 0 bp 2025-01-31 10:03:38,382 DEBUG chr12:92772251-97284501: Successfully fit background model for 4,061,815 bp. Use segment r for 0 bp 2025-01-31 10:03:38,436 DEBUG chr15:70987751-75591001: Successfully fit background model for 4,299,997 bp. Use segment r for 0 bp 2025-01-31 10:03:38,576 DEBUG chr16:39370251-52512501: Successfully fit background model for 12,048,910 bp. Use segment r for 0 bp 2025-01-31 10:03:38,810 DEBUG chr16:52512501-54630751: Successfully fit background model for 1,874,794 bp. Use segment r for 0 bp 2025-01-31 10:03:39,119 DEBUG chr13:76515751-85527751: Successfully fit background model for 8,150,453 bp. Use segment r for 0 bp 2025-01-31 10:03:39,234 DEBUG chr16:54630751-58951501: Successfully fit background model for 3,868,386 bp. Use segment r for 0 bp 2025-01-31 10:03:39,551 DEBUG chr13:85527751-89746251: Successfully fit background model for 3,726,452 bp. Use segment r for 0 bp 2025-01-31 10:03:39,737 DEBUG chr16:58951501-64038251: Successfully fit background model for 4,510,110 bp. Use segment r for 0 bp 2025-01-31 10:03:40,025 DEBUG chr12:97284501-110410251: Successfully fit background model for 12,432,532 bp. Use segment r for 0 bp 2025-01-31 10:03:40,121 DEBUG chr15:75591001-89251751: Successfully fit background model for 13,106,567 bp. Use segment r for 0 bp 2025-01-31 10:03:40,407 DEBUG chr12:110410251-113956251: Successfully fit background model for 3,356,791 bp. Use segment r for 0 bp 2025-01-31 10:03:40,575 DEBUG chr12:113956251-115025251: Successfully fit background model for 930,339 bp. Use segment r for 0 bp 2025-01-31 10:03:41,166 DEBUG chr12:115025251-120129022: Successfully fit background model for 4,423,138 bp. Use segment r for 0 bp 2025-01-31 10:03:41,212 DEBUG chr15:89251751-98502751: Successfully fit background model for 8,739,478 bp. Use segment r for 0 bp 2025-01-31 10:03:41,804 DEBUG chr15:98502751-104043685: Successfully fit background model for 5,140,662 bp. Use segment r for 0 bp 2025-01-31 10:03:43,024 DEBUG chr13:89746251-115374251: Successfully fit background model for 24,004,675 bp. Use segment r for 0 bp 2025-01-31 10:03:43,422 DEBUG chr16:64038251-90069251: Successfully fit background model for 23,734,473 bp. Use segment r for 0 bp 2025-01-31 10:03:43,633 DEBUG chr13:115374251-120421639: Successfully fit background model for 4,105,511 bp. Use segment r for 0 bp 2025-01-31 10:03:44,774 DEBUG chr16:90069251-98207768: Successfully fit background model for 7,753,706 bp. Use segment r for 0 bp 2025-01-31 10:03:52,722 DEBUG chr17:3000000-16011251: Successfully fit background model for 10,978,408 bp. Use segment r for 0 bp 2025-01-31 10:03:53,409 DEBUG chr17:16011251-20508251: Successfully fit background model for 3,864,315 bp. Use segment r for 0 bp 2025-01-31 10:03:54,239 DEBUG chr17:20508251-24353751: Successfully fit background model for 3,098,259 bp. Use segment r for 0 bp 2025-01-31 10:03:56,685 DEBUG chr17:24353751-37339251: Successfully fit background model for 12,206,737 bp. Use segment r for 0 bp 2025-01-31 10:03:57,131 DEBUG chr17:37339251-41993251: Successfully fit background model for 3,910,110 bp. Use segment r for 0 bp 2025-01-31 10:03:57,507 DEBUG chr17:41993251-45422251: Successfully fit background model for 3,247,220 bp. Use segment r for 0 bp 2025-01-31 10:03:57,731 DEBUG chr17:45422251-47765751: Successfully fit background model for 2,285,914 bp. Use segment r for 0 bp 2025-01-31 10:03:58,484 DEBUG chr17:47765751-52769001: Successfully fit background model for 4,774,841 bp. Use segment r for 0 bp 2025-01-31 10:03:58,849 DEBUG chr17:52769001-56010751: Successfully fit background model for 2,784,785 bp. Use segment r for 0 bp 2025-01-31 10:03:59,044 DEBUG chr17:56010751-57992251: Successfully fit background model for 1,841,349 bp. Use segment r for 0 bp 2025-01-31 10:03:59,548 DEBUG chr17:57992251-60919751: Successfully fit background model for 2,639,886 bp. Use segment r for 0 bp 2025-01-31 10:04:02,430 DEBUG chr17:60919751-75959751: Successfully fit background model for 14,105,360 bp. Use segment r for 0 bp 2025-01-31 10:04:02,580 DEBUG chr17:75959751-77307751: Successfully fit background model for 1,228,383 bp. Use segment r for 0 bp 2025-01-31 10:04:04,583 DEBUG chr17:77307751-89776751: Successfully fit background model for 11,825,795 bp. Use segment r for 0 bp 2025-01-31 10:04:05,090 DEBUG chr17:89776751-94987271: Successfully fit background model for 4,612,534 bp. Use segment r for 0 bp 2025-01-31 10:04:43,918 DEBUG chr18:3000500-17675251: Successfully fit background model for 13,295,861 bp. Use segment r for 0 bp 2025-01-31 10:04:44,073 DEBUG chr18:17675251-19089751: Successfully fit background model for 1,284,829 bp. Use segment r for 0 bp 2025-01-31 10:04:44,460 DEBUG chr19:3080000-11027751: Successfully fit background model for 7,041,737 bp. Use segment r for 0 bp 2025-01-31 10:04:44,723 DEBUG chr19:11027751-13865751: Successfully fit background model for 2,536,462 bp. Use segment r for 0 bp 2025-01-31 10:04:45,179 DEBUG chr19:13865751-19079251: Successfully fit background model for 4,908,488 bp. Use segment r for 0 bp 2025-01-31 10:04:45,283 DEBUG chr19:19079251-20074751: Successfully fit background model for 923,906 bp. Use segment r for 0 bp 2025-01-31 10:04:45,791 DEBUG chr18:19089751-34623751: Successfully fit background model for 14,348,303 bp. Use segment r for 0 bp 2025-01-31 10:04:45,968 DEBUG chr18:34623751-36317251: Successfully fit background model for 1,659,784 bp. Use segment r for 0 bp 2025-01-31 10:04:46,759 DEBUG chr19:20074751-33312251: Successfully fit background model for 12,582,251 bp. Use segment r for 0 bp 2025-01-31 10:04:46,980 DEBUG chr19:33312251-35594751: Successfully fit background model for 1,998,155 bp. Use segment r for 0 bp 2025-01-31 10:04:47,989 DEBUG chr19:35594751-44242751: Successfully fit background model for 8,055,379 bp. Use segment r for 0 bp 2025-01-31 10:04:48,196 DEBUG chr19:44242751-46369251: Successfully fit background model for 2,061,517 bp. Use segment r for 0 bp 2025-01-31 10:04:48,494 DEBUG chr19:46369251-49424751: Successfully fit background model for 2,925,751 bp. Use segment r for 0 bp 2025-01-31 10:04:48,745 DEBUG chr18:36317251-60589751: Successfully fit background model for 22,485,861 bp. Use segment r for 0 bp 2025-01-31 10:04:48,759 DEBUG chr19:49424751-52275751: Successfully fit background model for 2,632,179 bp. Use segment r for 0 bp 2025-01-31 10:04:48,880 DEBUG chr18:60589751-61640751: Successfully fit background model for 1,033,829 bp. Use segment r for 0 bp 2025-01-31 10:04:49,742 DEBUG chr19:52275751-61431566: Successfully fit background model for 8,680,912 bp. Use segment r for 0 bp 2025-01-31 10:04:51,572 DEBUG chr18:61640751-85620501: Successfully fit background model for 22,569,319 bp. Use segment r for 0 bp 2025-01-31 10:04:52,065 DEBUG chr18:85620501-90702639: Successfully fit background model for 4,302,399 bp. Use segment r for 0 bp 2025-01-31 10:05:53,325 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:05:53,328 INFO Calculating per-bp p-values 2025-01-31 10:05:53,330 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:05:53,384 DEBUG chr1: Calculating p-values 2025-01-31 10:05:53,388 DEBUG chr2: Calculating p-values 2025-01-31 10:05:53,388 DEBUG chr3: Calculating p-values 2025-01-31 10:05:53,389 DEBUG chrX: Calculating p-values 2025-01-31 10:05:53,391 DEBUG chr4: Calculating p-values 2025-01-31 10:05:53,401 DEBUG chr5: Calculating p-values 2025-01-31 10:06:30,542 DEBUG Saving p-values for chrX 2025-01-31 10:06:35,210 DEBUG Saving p-values for chr3 2025-01-31 10:06:38,562 DEBUG Saving p-values for chr5 2025-01-31 10:06:39,011 DEBUG Saving p-values for chr4 2025-01-31 10:06:47,425 DEBUG Saving p-values for chr2 2025-01-31 10:06:56,672 DEBUG chr6: Calculating p-values 2025-01-31 10:06:58,766 DEBUG Saving p-values for chr1 2025-01-31 10:07:02,820 DEBUG chr7: Calculating p-values 2025-01-31 10:07:05,604 DEBUG chr10: Calculating p-values 2025-01-31 10:07:08,496 DEBUG chr8: Calculating p-values 2025-01-31 10:07:21,776 DEBUG chr14: Calculating p-values 2025-01-31 10:07:35,353 DEBUG chr9: Calculating p-values 2025-01-31 10:07:36,509 DEBUG Saving p-values for chr6 2025-01-31 10:07:38,198 DEBUG Saving p-values for chr10 2025-01-31 10:07:47,737 DEBUG Saving p-values for chr8 2025-01-31 10:07:47,868 DEBUG Saving p-values for chr7 2025-01-31 10:07:57,990 DEBUG Saving p-values for chr14 2025-01-31 10:08:02,871 DEBUG chr11: Calculating p-values 2025-01-31 10:08:03,615 DEBUG chr13: Calculating p-values 2025-01-31 10:08:11,300 DEBUG chr12: Calculating p-values 2025-01-31 10:08:16,701 DEBUG Saving p-values for chr9 2025-01-31 10:08:19,244 DEBUG chr15: Calculating p-values 2025-01-31 10:08:19,682 DEBUG chr16: Calculating p-values 2025-01-31 10:08:43,756 DEBUG Saving p-values for chr12 2025-01-31 10:08:46,496 DEBUG chr17: Calculating p-values 2025-01-31 10:08:48,353 DEBUG Saving p-values for chr16 2025-01-31 10:08:48,366 DEBUG Saving p-values for chr11 2025-01-31 10:08:52,928 DEBUG Saving p-values for chr13 2025-01-31 10:08:59,166 DEBUG Saving p-values for chr15 2025-01-31 10:09:03,936 DEBUG chrY: Calculating p-values 2025-01-31 10:09:04,973 DEBUG chr18: Calculating p-values 2025-01-31 10:09:07,467 DEBUG chr19: Calculating p-values 2025-01-31 10:09:16,237 DEBUG Saving p-values for chr17 2025-01-31 10:09:25,728 DEBUG Saving p-values for chr19 2025-01-31 10:09:26,273 DEBUG Saving p-values for chr18 2025-01-31 10:09:46,040 DEBUG Results of calc_pvals emitted. 2025-01-31 10:09:46,040 INFO Converting threshold values to bigwig 2025-01-31 10:09:46,040 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:10:00,584 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:10:31,332 INFO Converting background quantile values to bigwig 2025-01-31 10:10:31,332 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:11:10,531 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:11:38,734 INFO Calculating per-bp FDRs 2025-01-31 10:11:38,736 DEBUG AG81959: Extracting raw P-values 2025-01-31 10:12:13,534 DEBUG AG81959: Computing FDR 2025-01-31 10:12:29,773 DEBUG AG81959: Saving FDRs to parquet 2025-01-31 10:13:21,382 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:13:21,449 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:13:21,450 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:13:25,410 DEBUG chr3: Calling hotspots 2025-01-31 10:13:25,738 DEBUG chr4: Calling hotspots 2025-01-31 10:13:25,777 DEBUG chr5: Calling hotspots 2025-01-31 10:13:25,918 DEBUG chrX: Calling hotspots 2025-01-31 10:13:26,091 DEBUG chr1: Calling hotspots 2025-01-31 10:13:26,419 DEBUG chr2: Calling hotspots 2025-01-31 10:13:33,628 DEBUG chr5: 1958 hotspots called 2025-01-31 10:13:33,703 DEBUG chr3: 1779 hotspots called 2025-01-31 10:13:33,783 DEBUG chr4: 1859 hotspots called 2025-01-31 10:13:34,247 DEBUG chrX: 1318 hotspots called 2025-01-31 10:13:34,837 DEBUG chr2: 2523 hotspots called 2025-01-31 10:13:35,267 DEBUG chr1: 2235 hotspots called 2025-01-31 10:13:36,346 DEBUG chr10: Calling hotspots 2025-01-31 10:13:36,617 DEBUG chr6: Calling hotspots 2025-01-31 10:13:36,782 DEBUG chr8: Calling hotspots 2025-01-31 10:13:36,832 DEBUG chr7: Calling hotspots 2025-01-31 10:13:37,387 DEBUG chr14: Calling hotspots 2025-01-31 10:13:37,682 DEBUG chr9: Calling hotspots 2025-01-31 10:13:42,034 DEBUG chr10: 1620 hotspots called 2025-01-31 10:13:42,337 DEBUG chr8: 1671 hotspots called 2025-01-31 10:13:42,563 DEBUG chr14: 1258 hotspots called 2025-01-31 10:13:42,813 DEBUG chr6: 1705 hotspots called 2025-01-31 10:13:43,070 DEBUG chr9: 1844 hotspots called 2025-01-31 10:13:43,118 DEBUG chr7: 2084 hotspots called 2025-01-31 10:13:44,506 DEBUG chr11: Calling hotspots 2025-01-31 10:13:44,887 DEBUG chr13: Calling hotspots 2025-01-31 10:13:44,903 DEBUG chr15: Calling hotspots 2025-01-31 10:13:45,048 DEBUG chr12: Calling hotspots 2025-01-31 10:13:45,062 DEBUG chr17: Calling hotspots 2025-01-31 10:13:45,120 DEBUG chr16: Calling hotspots 2025-01-31 10:13:49,438 DEBUG chr17: 1303 hotspots called 2025-01-31 10:13:49,479 DEBUG chr16: 1094 hotspots called 2025-01-31 10:13:49,551 DEBUG chr15: 1411 hotspots called 2025-01-31 10:13:49,886 DEBUG chr11: 2248 hotspots called 2025-01-31 10:13:50,200 DEBUG chr13: 1694 hotspots called 2025-01-31 10:13:50,269 DEBUG chr12: 1410 hotspots called 2025-01-31 10:13:50,546 DEBUG chr19: Calling hotspots 2025-01-31 10:13:50,768 DEBUG chr18: Calling hotspots 2025-01-31 10:13:53,011 DEBUG chr19: 1065 hotspots called 2025-01-31 10:13:54,438 DEBUG chr18: 1128 hotspots called 2025-01-31 10:13:54,765 DEBUG Results of call_hotspots emitted. 2025-01-31 10:13:54,789 INFO There are 33207 hotspots called at FDR=0.05 2025-01-31 10:13:56,754 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:13:56,754 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:14:05,398 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:14:05,803 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:14:05,989 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:14:06,959 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:14:08,065 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:14:08,114 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:14:15,651 DEBUG chr5: 1989 peaks called 2025-01-31 10:14:16,282 DEBUG chr4: 1874 peaks called 2025-01-31 10:14:16,364 DEBUG chr3: 1793 peaks called 2025-01-31 10:14:16,946 DEBUG chrX: 1254 peaks called 2025-01-31 10:14:19,282 DEBUG chr2: 2527 peaks called 2025-01-31 10:14:19,419 DEBUG chr1: 2287 peaks called 2025-01-31 10:14:24,254 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:14:24,570 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:14:24,844 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:14:24,867 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:14:27,039 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:14:27,400 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:14:32,972 DEBUG chr8: 1686 peaks called 2025-01-31 10:14:33,442 DEBUG chr10: 1637 peaks called 2025-01-31 10:14:33,905 DEBUG chr7: 2177 peaks called 2025-01-31 10:14:34,013 DEBUG chr6: 1693 peaks called 2025-01-31 10:14:34,282 DEBUG chr14: 1240 peaks called 2025-01-31 10:14:34,915 DEBUG chr9: 1835 peaks called 2025-01-31 10:14:39,645 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:14:39,866 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:14:40,216 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:14:40,374 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:14:40,406 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:14:40,711 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:14:43,322 DEBUG chr15: 1433 peaks called 2025-01-31 10:14:43,499 DEBUG chr16: 1095 peaks called 2025-01-31 10:14:43,529 DEBUG chr17: 1320 peaks called 2025-01-31 10:14:43,928 DEBUG chr11: 2321 peaks called 2025-01-31 10:14:44,382 DEBUG chr12: 1401 peaks called 2025-01-31 10:14:44,482 DEBUG chr13: 1719 peaks called 2025-01-31 10:14:45,651 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:14:46,301 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:14:48,652 DEBUG chr19: 1090 peaks called 2025-01-31 10:14:51,944 DEBUG chr18: 1084 peaks called 2025-01-31 10:14:52,738 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:14:52,767 INFO There are 33455 peaks called at FDR=0.05 2025-01-31 10:14:53,538 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:14:53,538 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:14:57,149 DEBUG chr5: Calling hotspots 2025-01-31 10:14:57,446 DEBUG chr3: Calling hotspots 2025-01-31 10:14:57,482 DEBUG chr4: Calling hotspots 2025-01-31 10:14:57,690 DEBUG chrX: Calling hotspots 2025-01-31 10:14:57,966 DEBUG chr2: Calling hotspots 2025-01-31 10:14:58,272 DEBUG chr1: Calling hotspots 2025-01-31 10:15:03,623 DEBUG chr5: 1476 hotspots called 2025-01-31 10:15:04,676 DEBUG chr3: 1235 hotspots called 2025-01-31 10:15:04,704 DEBUG chr4: 1373 hotspots called 2025-01-31 10:15:05,385 DEBUG chrX: 750 hotspots called 2025-01-31 10:15:06,258 DEBUG chr2: 1843 hotspots called 2025-01-31 10:15:06,818 DEBUG chr1: 1587 hotspots called 2025-01-31 10:15:07,044 DEBUG chr6: Calling hotspots 2025-01-31 10:15:07,577 DEBUG chr10: Calling hotspots 2025-01-31 10:15:08,326 DEBUG chr7: Calling hotspots 2025-01-31 10:15:08,403 DEBUG chr8: Calling hotspots 2025-01-31 10:15:08,916 DEBUG chr14: Calling hotspots 2025-01-31 10:15:09,241 DEBUG chr9: Calling hotspots 2025-01-31 10:15:12,546 DEBUG chr10: 1113 hotspots called 2025-01-31 10:15:12,803 DEBUG chr6: 1180 hotspots called 2025-01-31 10:15:13,044 DEBUG chr8: 1206 hotspots called 2025-01-31 10:15:13,083 DEBUG chr14: 836 hotspots called 2025-01-31 10:15:13,239 DEBUG chr7: 1614 hotspots called 2025-01-31 10:15:13,459 DEBUG chr9: 1341 hotspots called 2025-01-31 10:15:14,951 DEBUG chr11: Calling hotspots 2025-01-31 10:15:15,116 DEBUG chr15: Calling hotspots 2025-01-31 10:15:15,340 DEBUG chr16: Calling hotspots 2025-01-31 10:15:15,426 DEBUG chr12: Calling hotspots 2025-01-31 10:15:15,465 DEBUG chr13: Calling hotspots 2025-01-31 10:15:15,492 DEBUG chr17: Calling hotspots 2025-01-31 10:15:19,485 DEBUG chr15: 1058 hotspots called 2025-01-31 10:15:20,218 DEBUG chr16: 794 hotspots called 2025-01-31 10:15:20,332 DEBUG chr17: 986 hotspots called 2025-01-31 10:15:21,070 DEBUG chr11: 1785 hotspots called 2025-01-31 10:15:21,227 DEBUG chr18: Calling hotspots 2025-01-31 10:15:21,319 DEBUG chr19: Calling hotspots 2025-01-31 10:15:21,734 DEBUG chr12: 918 hotspots called 2025-01-31 10:15:21,860 DEBUG chr13: 1229 hotspots called 2025-01-31 10:15:24,548 DEBUG chr19: 782 hotspots called 2025-01-31 10:15:25,973 DEBUG chr18: 698 hotspots called 2025-01-31 10:15:26,402 DEBUG Results of call_hotspots emitted. 2025-01-31 10:15:26,433 INFO There are 23804 hotspots called at FDR=0.01 2025-01-31 10:15:27,768 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:15:27,768 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:15:38,283 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:15:38,635 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:15:38,655 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:15:39,089 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:15:39,452 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:15:40,621 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:15:48,263 DEBUG chr5: 1490 peaks called 2025-01-31 10:15:49,567 DEBUG chr4: 1389 peaks called 2025-01-31 10:15:50,345 DEBUG chr3: 1261 peaks called 2025-01-31 10:15:51,131 DEBUG chrX: 733 peaks called 2025-01-31 10:15:52,527 DEBUG chr2: 1842 peaks called 2025-01-31 10:15:53,783 DEBUG chr1: 1622 peaks called 2025-01-31 10:15:57,673 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:15:58,312 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:15:58,461 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:15:58,576 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:15:59,953 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:16:00,745 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:16:10,053 DEBUG chr8: 1240 peaks called 2025-01-31 10:16:10,055 DEBUG chr10: 1150 peaks called 2025-01-31 10:16:10,452 DEBUG chr7: 1667 peaks called 2025-01-31 10:16:10,488 DEBUG chr6: 1179 peaks called 2025-01-31 10:16:10,770 DEBUG chr14: 835 peaks called 2025-01-31 10:16:11,612 DEBUG chr9: 1352 peaks called 2025-01-31 10:16:16,393 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:16:16,750 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:16:16,918 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:16:17,412 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:16:17,643 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:16:17,931 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:16:23,023 DEBUG chr16: 805 peaks called 2025-01-31 10:16:24,296 DEBUG chr15: 1085 peaks called 2025-01-31 10:16:24,975 DEBUG chr17: 1010 peaks called 2025-01-31 10:16:25,315 DEBUG chr13: 1270 peaks called 2025-01-31 10:16:26,297 DEBUG chr12: 926 peaks called 2025-01-31 10:16:26,553 DEBUG chr11: 1800 peaks called 2025-01-31 10:16:27,428 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:16:27,891 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:16:32,026 DEBUG chr19: 784 peaks called 2025-01-31 10:16:34,148 DEBUG chr18: 695 peaks called 2025-01-31 10:16:35,201 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:16:35,230 INFO There are 24135 peaks called at FDR=0.01 2025-01-31 10:16:35,780 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:16:35,780 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:16:39,603 DEBUG chr5: Calling hotspots 2025-01-31 10:16:39,636 DEBUG chr4: Calling hotspots 2025-01-31 10:16:39,636 DEBUG chr3: Calling hotspots 2025-01-31 10:16:39,861 DEBUG chrX: Calling hotspots 2025-01-31 10:16:40,251 DEBUG chr2: Calling hotspots 2025-01-31 10:16:40,588 DEBUG chr1: Calling hotspots 2025-01-31 10:16:50,126 DEBUG chr5: 1053 hotspots called 2025-01-31 10:16:51,722 DEBUG chr4: 1011 hotspots called 2025-01-31 10:16:52,507 DEBUG chr3: 898 hotspots called 2025-01-31 10:16:54,243 DEBUG chr6: Calling hotspots 2025-01-31 10:16:55,380 DEBUG chr7: Calling hotspots 2025-01-31 10:16:55,545 DEBUG chr10: Calling hotspots 2025-01-31 10:16:55,671 DEBUG chrX: 495 hotspots called 2025-01-31 10:16:56,891 DEBUG chr2: 1317 hotspots called 2025-01-31 10:16:58,348 DEBUG chr1: 1182 hotspots called 2025-01-31 10:16:58,743 DEBUG chr8: Calling hotspots 2025-01-31 10:16:59,600 DEBUG chr14: Calling hotspots 2025-01-31 10:17:01,341 DEBUG chr9: Calling hotspots 2025-01-31 10:17:04,717 DEBUG chr10: 817 hotspots called 2025-01-31 10:17:05,115 DEBUG chr6: 821 hotspots called 2025-01-31 10:17:05,448 DEBUG chr7: 1208 hotspots called 2025-01-31 10:17:06,106 DEBUG chr8: 904 hotspots called 2025-01-31 10:17:06,226 DEBUG chr14: 571 hotspots called 2025-01-31 10:17:06,939 DEBUG chr9: 943 hotspots called 2025-01-31 10:17:07,287 DEBUG chr11: Calling hotspots 2025-01-31 10:17:08,018 DEBUG chr13: Calling hotspots 2025-01-31 10:17:08,194 DEBUG chr12: Calling hotspots 2025-01-31 10:17:08,204 DEBUG chr15: Calling hotspots 2025-01-31 10:17:08,608 DEBUG chr16: Calling hotspots 2025-01-31 10:17:09,292 DEBUG chr17: Calling hotspots 2025-01-31 10:17:16,420 DEBUG chr11: 1301 hotspots called 2025-01-31 10:17:16,522 DEBUG chr16: 588 hotspots called 2025-01-31 10:17:16,717 DEBUG chr15: 786 hotspots called 2025-01-31 10:17:17,178 DEBUG chr17: 767 hotspots called 2025-01-31 10:17:17,694 DEBUG chr13: 897 hotspots called 2025-01-31 10:17:17,701 DEBUG chr19: Calling hotspots 2025-01-31 10:17:18,130 DEBUG chr12: 641 hotspots called 2025-01-31 10:17:18,288 DEBUG chr18: Calling hotspots 2025-01-31 10:17:22,304 DEBUG chr19: 566 hotspots called 2025-01-31 10:17:25,274 DEBUG chr18: 479 hotspots called 2025-01-31 10:17:26,120 DEBUG Results of call_hotspots emitted. 2025-01-31 10:17:26,147 INFO There are 17245 hotspots called at FDR=0.001 2025-01-31 10:17:27,144 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:17:27,144 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:17:38,667 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:17:39,513 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:17:39,551 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:17:40,131 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:17:40,657 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:17:41,212 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:17:57,746 DEBUG chr3: 918 peaks called 2025-01-31 10:17:58,665 DEBUG chr5: 1050 peaks called 2025-01-31 10:17:59,201 DEBUG chr4: 1017 peaks called 2025-01-31 10:18:00,210 DEBUG chrX: 485 peaks called 2025-01-31 10:18:00,941 DEBUG chr2: 1307 peaks called 2025-01-31 10:18:03,336 DEBUG chr1: 1227 peaks called 2025-01-31 10:18:07,740 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:18:07,802 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:18:08,415 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:18:08,644 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:18:08,814 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:18:11,174 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:18:21,032 DEBUG chr10: 834 peaks called 2025-01-31 10:18:21,089 DEBUG chr14: 569 peaks called 2025-01-31 10:18:21,332 DEBUG chr8: 924 peaks called 2025-01-31 10:18:21,919 DEBUG chr6: 826 peaks called 2025-01-31 10:18:21,952 DEBUG chr7: 1236 peaks called 2025-01-31 10:18:22,006 DEBUG chr9: 945 peaks called 2025-01-31 10:18:27,946 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:18:28,015 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:18:28,211 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:18:28,677 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:18:28,827 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:18:29,285 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:18:36,947 DEBUG chr17: 773 peaks called 2025-01-31 10:18:37,438 DEBUG chr16: 586 peaks called 2025-01-31 10:18:38,566 DEBUG chr15: 801 peaks called 2025-01-31 10:18:39,657 DEBUG chr11: 1301 peaks called 2025-01-31 10:18:39,900 DEBUG chr13: 912 peaks called 2025-01-31 10:18:40,671 DEBUG chr12: 650 peaks called 2025-01-31 10:18:41,329 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:18:41,540 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:18:45,874 DEBUG chr19: 565 peaks called 2025-01-31 10:18:46,852 DEBUG chr18: 489 peaks called 2025-01-31 10:18:47,718 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:18:47,761 INFO There are 17415 peaks called at FDR=0.001 2025-01-31 10:18:48,316 INFO Saving density 2025-01-31 10:18:48,317 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:19:12,319 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:19:20,995 DEBUG Converting density to bigwig 2025-01-31 10:20:47,319 INFO Program finished