2025-01-31 09:31:57,534 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:57,537 INFO Extracting cutcounts from bam file 2025-01-31 09:34:00,727 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:34:00,769 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:34:00,771 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:34:00,772 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:34:00,773 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:34:00,773 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:34:00,773 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:34:01,845 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:34:02,100 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:34:02,225 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:34:02,282 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:34:02,557 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:34:02,837 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:34:02,970 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:34:03,320 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:34:03,419 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:34:03,472 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:34:03,499 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:34:04,051 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:34:04,348 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:34:04,354 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:34:04,442 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:34:05,130 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:34:05,130 INFO Total cutcounts = 19405592 2025-01-31 09:34:05,137 INFO Smoothing signal using MODWT 2025-01-31 09:34:05,138 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:34:05,173 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:05,177 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:05,178 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:05,178 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:05,179 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:05,195 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:54,738 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:55,588 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:58,705 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:00,452 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:31,498 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:46,772 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:42,784 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:52,915 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:54,116 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:57,703 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:11,684 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:42,396 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:26,547 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:29,992 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:30,870 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:50,100 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:41:50,101 INFO Estimating parameters of background model 2025-01-31 09:41:50,101 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:41:54,852 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:41:54,950 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:41:55,038 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:41:55,615 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:41:55,967 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:41:56,514 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:42:10,673 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:42:10,675 DEBUG chr3: Signal quantile: 0.993. signal threshold: 13. Best RMSEA: 0.016 2025-01-31 09:42:11,593 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:42:11,595 DEBUG chrX: Signal quantile: 0.995. signal threshold: 9. Best RMSEA: 0.020 2025-01-31 09:42:12,094 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:42:12,096 DEBUG chr5: Signal quantile: 0.989. signal threshold: 12. Best RMSEA: 0.014 2025-01-31 09:42:12,638 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:42:12,640 DEBUG chr4: Signal quantile: 0.990. signal threshold: 12. Best RMSEA: 0.013 2025-01-31 09:42:13,221 DEBUG chr3 total SNP count: 269215 2025-01-31 09:42:13,221 DEBUG chr3 length: 160039680 2025-01-31 09:42:13,221 DEBUG ----------------------------------------- 2025-01-31 09:42:13,221 INFO Processing SNPs in chr3 2025-01-31 09:42:13,478 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 269215)] 2025-01-31 09:42:13,655 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:14,342 DEBUG chrX total SNP count: 246441 2025-01-31 09:42:14,342 DEBUG chrX length: 171031299 2025-01-31 09:42:14,342 DEBUG ----------------------------------------- 2025-01-31 09:42:14,342 INFO Processing SNPs in chrX 2025-01-31 09:42:14,700 DEBUG chr5 total SNP count: 256737 2025-01-31 09:42:14,700 DEBUG chr5 length: 151834684 2025-01-31 09:42:14,700 DEBUG ----------------------------------------- 2025-01-31 09:42:14,700 INFO Processing SNPs in chr5 2025-01-31 09:42:14,714 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32805), (32805, 32807), (32807, 32865), (32865, 175432), (175432, 246441)] 2025-01-31 09:42:14,822 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:14,945 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 256737)] 2025-01-31 09:42:15,113 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:15,316 DEBUG chr4 total SNP count: 260068 2025-01-31 09:42:15,316 DEBUG chr4 length: 156508116 2025-01-31 09:42:15,316 DEBUG ----------------------------------------- 2025-01-31 09:42:15,316 INFO Processing SNPs in chr4 2025-01-31 09:42:15,456 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:42:15,457 DEBUG chr2: Signal quantile: 0.990. signal threshold: 12. Best RMSEA: 0.014 2025-01-31 09:42:15,703 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 65618), (65618, 260068)] 2025-01-31 09:42:15,828 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:17,447 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:42:17,449 DEBUG chr1: Signal quantile: 0.991. signal threshold: 13. Best RMSEA: 0.013 2025-01-31 09:42:18,487 DEBUG chr2 total SNP count: 314388 2025-01-31 09:42:18,487 DEBUG chr2 length: 182113224 2025-01-31 09:42:18,487 DEBUG ----------------------------------------- 2025-01-31 09:42:18,488 INFO Processing SNPs in chr2 2025-01-31 09:42:18,660 DEBUG Segmenting atomic regions: 2025-01-31 09:42:18,762 DEBUG Processing 1/108 atomic regions from SNP 0 to 601 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:18,953 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 306539), (306539, 314388)] 2025-01-31 09:42:19,156 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:19,749 DEBUG Processing 2/108 atomic regions from SNP 301 to 902 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:19,950 DEBUG Processing 3/108 atomic regions from SNP 602 to 1203 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,150 DEBUG Processing 4/108 atomic regions from SNP 903 to 1504 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,350 DEBUG Processing 5/108 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,554 DEBUG Processing 6/108 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,676 DEBUG chr1 total SNP count: 340095 2025-01-31 09:42:20,676 DEBUG chr1 length: 195471971 2025-01-31 09:42:20,677 DEBUG ----------------------------------------- 2025-01-31 09:42:20,677 INFO Processing SNPs in chr1 2025-01-31 09:42:20,757 DEBUG Processing 7/108 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,958 DEBUG Processing 8/108 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,998 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 340095)] 2025-01-31 09:42:21,161 DEBUG Processing 9/108 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,220 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:21,362 DEBUG Processing 10/108 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,564 DEBUG Processing 11/108 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,773 DEBUG Processing 12/108 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,984 DEBUG Processing 13/108 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,208 DEBUG Processing 14/108 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,445 DEBUG Processing 15/108 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,690 DEBUG Processing 16/108 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,926 DEBUG Processing 17/108 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:23,156 DEBUG Processing 18/108 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:23,371 DEBUG Processing 19/108 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:23,488 DEBUG Segmenting atomic regions: 2025-01-31 09:42:23,574 DEBUG Processing 20/108 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:23,598 DEBUG Processing 1/217 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,779 DEBUG Processing 21/108 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:23,984 DEBUG Processing 22/108 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,202 DEBUG Processing 23/108 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,243 DEBUG Processing 2/217 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,407 DEBUG Processing 24/108 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,458 DEBUG Processing 3/217 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,613 DEBUG Processing 25/108 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,679 DEBUG Processing 4/217 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,820 DEBUG Processing 26/108 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,924 DEBUG Processing 5/217 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,032 DEBUG Processing 27/108 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:25,146 DEBUG Processing 6/217 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,250 DEBUG Processing 28/108 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:25,371 DEBUG Processing 7/217 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,474 DEBUG Processing 29/108 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:25,598 DEBUG Processing 8/217 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,694 DEBUG Processing 30/108 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:25,824 DEBUG Processing 9/217 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,917 DEBUG Processing 31/108 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,045 DEBUG Processing 10/217 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,133 DEBUG Processing 32/108 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,264 DEBUG Processing 11/217 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,348 DEBUG Processing 33/108 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,480 DEBUG Processing 12/217 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,561 DEBUG Processing 34/108 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,693 DEBUG Processing 13/217 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,770 DEBUG Processing 35/108 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,906 DEBUG Processing 14/217 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,974 DEBUG Processing 36/108 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:27,124 DEBUG Processing 15/217 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,190 DEBUG Processing 37/108 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:27,338 DEBUG Processing 16/217 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,414 DEBUG Processing 38/108 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:27,550 DEBUG Processing 17/217 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,655 DEBUG Processing 39/108 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:27,774 DEBUG Processing 18/217 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,888 DEBUG Processing 40/108 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:27,996 DEBUG Processing 19/217 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,112 DEBUG Processing 41/108 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:28,215 DEBUG Processing 20/217 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,334 DEBUG Processing 42/108 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:28,437 DEBUG Processing 21/217 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,551 DEBUG Processing 43/108 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:28,654 DEBUG Processing 22/217 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,784 DEBUG Processing 44/108 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:28,872 DEBUG Processing 23/217 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,018 DEBUG Processing 45/108 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,094 DEBUG Processing 24/217 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,256 DEBUG Processing 46/108 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,314 DEBUG Processing 25/217 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,482 DEBUG Processing 47/108 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,536 DEBUG Processing 26/217 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,703 DEBUG Processing 48/108 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,756 DEBUG Processing 27/217 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,919 DEBUG Processing 49/108 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,976 DEBUG Processing 28/217 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,137 DEBUG Processing 50/108 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:30,197 DEBUG Processing 29/217 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,349 DEBUG Processing 51/108 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:30,419 DEBUG Processing 30/217 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,561 DEBUG Processing 52/108 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:30,656 DEBUG Processing 31/217 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,765 DEBUG Processing 53/108 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:30,888 DEBUG Processing 32/217 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,969 DEBUG Processing 54/108 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:31,107 DEBUG Processing 33/217 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,178 DEBUG Processing 55/108 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:31,325 DEBUG Processing 34/217 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,386 DEBUG Processing 56/108 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:31,542 DEBUG Processing 35/217 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,594 DEBUG Processing 57/108 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:31,766 DEBUG Processing 36/217 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,806 DEBUG Processing 58/108 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:31,983 DEBUG Processing 37/217 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,011 DEBUG Processing 59/108 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,204 DEBUG Processing 38/217 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,220 DEBUG Processing 60/108 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,424 DEBUG Processing 39/217 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,431 DEBUG Processing 61/108 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,643 DEBUG Processing 62/108 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,644 DEBUG Processing 40/217 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,856 DEBUG Processing 63/108 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,864 DEBUG Processing 41/217 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,070 DEBUG Processing 64/108 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:33,085 DEBUG Processing 42/217 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,283 DEBUG Processing 65/108 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:33,303 DEBUG Processing 43/217 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,494 DEBUG Processing 66/108 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:33,528 DEBUG Processing 44/217 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,708 DEBUG Processing 67/108 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:33,769 DEBUG Processing 45/217 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,921 DEBUG Processing 68/108 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:34,011 DEBUG Processing 46/217 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,136 DEBUG Processing 69/108 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:34,232 DEBUG Processing 47/217 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,353 DEBUG Processing 70/108 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:34,452 DEBUG Processing 48/217 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,570 DEBUG Processing 71/108 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:34,666 DEBUG Processing 49/217 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,792 DEBUG Processing 72/108 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:34,881 DEBUG Processing 50/217 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,011 DEBUG Processing 73/108 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:35,103 DEBUG Processing 51/217 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,225 DEBUG Processing 74/108 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:35,327 DEBUG Processing 52/217 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,437 DEBUG Processing 75/108 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:35,548 DEBUG Processing 53/217 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,644 DEBUG Processing 76/108 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:35,769 DEBUG Processing 54/217 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,854 DEBUG Processing 77/108 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:35,989 DEBUG Processing 55/217 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,067 DEBUG Processing 78/108 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:36,210 DEBUG Processing 56/217 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,285 DEBUG Processing 79/108 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:36,429 DEBUG Processing 57/217 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,501 DEBUG Processing 80/108 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:36,645 DEBUG Processing 58/217 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,715 DEBUG Processing 81/108 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:36,861 DEBUG Processing 59/217 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,926 DEBUG Processing 82/108 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:37,078 DEBUG Processing 60/217 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,142 DEBUG Processing 83/108 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:37,320 DEBUG Processing 61/217 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,360 DEBUG Processing 84/108 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:37,534 DEBUG Processing 62/217 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,577 DEBUG Processing 85/108 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:37,748 DEBUG Processing 63/217 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,799 DEBUG Processing 86/108 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:37,964 DEBUG Processing 64/217 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,026 DEBUG Processing 87/108 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:38,182 DEBUG Processing 65/217 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,264 DEBUG Processing 88/108 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:38,400 DEBUG Processing 66/217 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,478 DEBUG Processing 89/108 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:38,620 DEBUG Processing 67/217 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,685 DEBUG Processing 90/108 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:38,837 DEBUG Processing 68/217 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,894 DEBUG Processing 91/108 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:39,052 DEBUG Processing 69/217 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,107 DEBUG Processing 92/108 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:39,267 DEBUG Processing 70/217 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,316 DEBUG Processing 93/108 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:39,484 DEBUG Processing 71/217 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,527 DEBUG Processing 94/108 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:39,700 DEBUG Processing 72/217 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,735 DEBUG Processing 95/108 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:39,918 DEBUG Processing 73/217 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,941 DEBUG Processing 96/108 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:40,138 DEBUG Processing 74/217 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,149 DEBUG Processing 97/108 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:40,355 DEBUG Processing 75/217 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,356 DEBUG Processing 98/108 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:40,566 DEBUG Processing 99/108 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:40,572 DEBUG Processing 76/217 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,770 DEBUG Processing 100/108 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:40,788 DEBUG Processing 77/217 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,977 DEBUG Processing 101/108 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:41,001 DEBUG Processing 78/217 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,179 DEBUG Processing 102/108 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:41,210 DEBUG Processing 79/217 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,384 DEBUG Processing 103/108 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:41,424 DEBUG Processing 80/217 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,588 DEBUG Processing 104/108 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:41,635 DEBUG Processing 81/217 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,792 DEBUG Processing 105/108 atomic regions from SNP 31304 to 31904 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:41,849 DEBUG Processing 82/217 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,992 DEBUG Processing 106/108 atomic regions from SNP 31604 to 32204 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:42,063 DEBUG Processing 83/217 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,194 DEBUG Processing 107/108 atomic regions from SNP 31904 to 32504 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:42,280 DEBUG Processing 84/217 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,393 DEBUG Processing 108/108 atomic regions from SNP 32204 to 32804 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:42,491 DEBUG Unique SNPs positions in subchromosome 1: 32805 2025-01-31 09:42:42,499 DEBUG Processing 85/217 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,549 DEBUG Subchromosome time: 27.726667381939478, subchromosome SNPs: 32805 2025-01-31 09:42:42,585 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:42,721 DEBUG Processing 86/217 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,942 DEBUG Processing 87/217 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,158 DEBUG Processing 88/217 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,376 DEBUG Processing 89/217 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,591 DEBUG Processing 90/217 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,813 DEBUG Processing 91/217 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,029 DEBUG Processing 92/217 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,247 DEBUG Processing 93/217 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,467 DEBUG Processing 94/217 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,691 DEBUG Processing 95/217 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,907 DEBUG Processing 96/217 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,126 DEBUG Processing 97/217 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,148 DEBUG Segmenting atomic regions: 2025-01-31 09:42:45,258 DEBUG Processing 1/854 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,347 DEBUG Processing 98/217 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,437 DEBUG Segmenting atomic regions: 2025-01-31 09:42:45,550 DEBUG Processing 1/896 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,567 DEBUG Processing 99/217 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,790 DEBUG Processing 100/217 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,003 DEBUG Processing 2/854 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,007 DEBUG Processing 101/217 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,224 DEBUG Processing 3/854 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,231 DEBUG Processing 102/217 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,291 DEBUG Processing 2/896 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,445 DEBUG Processing 4/854 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,455 DEBUG Processing 103/217 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,512 DEBUG Processing 3/896 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,669 DEBUG Processing 5/854 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,681 DEBUG Processing 104/217 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,733 DEBUG Processing 4/896 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,894 DEBUG Processing 6/854 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,917 DEBUG Processing 105/217 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,957 DEBUG Processing 5/896 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,116 DEBUG Processing 7/854 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,142 DEBUG Processing 106/217 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,177 DEBUG Processing 6/896 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,341 DEBUG Processing 8/854 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,370 DEBUG Processing 107/217 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,402 DEBUG Processing 7/896 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,562 DEBUG Processing 9/854 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,592 DEBUG Processing 108/217 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,626 DEBUG Processing 8/896 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,782 DEBUG Processing 10/854 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,811 DEBUG Processing 109/217 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,848 DEBUG Processing 9/896 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,996 DEBUG Processing 11/854 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,026 DEBUG Processing 110/217 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,065 DEBUG Processing 10/896 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,214 DEBUG Processing 12/854 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,245 DEBUG Processing 111/217 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,281 DEBUG Processing 11/896 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,433 DEBUG Processing 13/854 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,462 DEBUG Processing 112/217 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,507 DEBUG Processing 12/896 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,653 DEBUG Processing 14/854 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,682 DEBUG Processing 113/217 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,724 DEBUG Processing 13/896 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,870 DEBUG Processing 15/854 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,902 DEBUG Processing 114/217 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,950 DEBUG Processing 14/896 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,087 DEBUG Processing 16/854 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,121 DEBUG Processing 115/217 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,175 DEBUG Processing 15/896 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,301 DEBUG Processing 17/854 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,338 DEBUG Processing 116/217 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,396 DEBUG Processing 16/896 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,512 DEBUG Processing 18/854 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,556 DEBUG Processing 117/217 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,615 DEBUG Processing 17/896 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,728 DEBUG Processing 19/854 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,779 DEBUG Processing 118/217 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,834 DEBUG Processing 18/896 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,939 DEBUG Processing 20/854 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,994 DEBUG Processing 119/217 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,047 DEBUG Processing 19/896 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,153 DEBUG Processing 21/854 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,208 DEBUG Processing 120/217 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,262 DEBUG Processing 20/896 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,366 DEBUG Processing 22/854 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,423 DEBUG Processing 121/217 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,473 DEBUG Processing 21/896 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,579 DEBUG Processing 23/854 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,641 DEBUG Processing 122/217 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,692 DEBUG Processing 22/896 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,789 DEBUG Processing 24/854 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,860 DEBUG Processing 123/217 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,913 DEBUG Processing 23/896 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,000 DEBUG Processing 25/854 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,077 DEBUG Processing 124/217 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,134 DEBUG Processing 24/896 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,210 DEBUG Processing 26/854 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,293 DEBUG Processing 125/217 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,348 DEBUG Processing 25/896 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,419 DEBUG Processing 27/854 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,506 DEBUG Processing 126/217 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,564 DEBUG Processing 26/896 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,631 DEBUG Processing 28/854 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,721 DEBUG Processing 127/217 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,779 DEBUG Processing 27/896 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,841 DEBUG Processing 29/854 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,937 DEBUG Processing 128/217 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,999 DEBUG Processing 28/896 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,056 DEBUG Processing 30/854 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,152 DEBUG Processing 129/217 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,219 DEBUG Processing 29/896 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,268 DEBUG Processing 31/854 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,365 DEBUG Processing 130/217 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,444 DEBUG Processing 30/896 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,483 DEBUG Processing 32/854 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,579 DEBUG Processing 131/217 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,660 DEBUG Processing 31/896 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,696 DEBUG Processing 33/854 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,795 DEBUG Processing 132/217 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,877 DEBUG Processing 32/896 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,909 DEBUG Processing 34/854 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,009 DEBUG Processing 133/217 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,113 DEBUG Processing 33/896 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,119 DEBUG Processing 35/854 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,221 DEBUG Processing 134/217 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,332 DEBUG Processing 36/854 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,342 DEBUG Processing 34/896 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,433 DEBUG Processing 135/217 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,542 DEBUG Processing 37/854 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,553 DEBUG Processing 35/896 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,643 DEBUG Processing 136/217 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,759 DEBUG Processing 38/854 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,770 DEBUG Processing 36/896 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,857 DEBUG Processing 137/217 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,973 DEBUG Processing 39/854 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,986 DEBUG Processing 37/896 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,068 DEBUG Processing 138/217 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,189 DEBUG Processing 40/854 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,202 DEBUG Processing 38/896 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,281 DEBUG Processing 139/217 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,401 DEBUG Processing 41/854 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,417 DEBUG Processing 39/896 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,495 DEBUG Processing 140/217 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,614 DEBUG Processing 42/854 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,633 DEBUG Processing 40/896 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,712 DEBUG Processing 141/217 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,826 DEBUG Processing 43/854 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,844 DEBUG Segmenting atomic regions: 2025-01-31 09:42:54,851 DEBUG Processing 41/896 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,924 DEBUG Processing 142/217 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,975 DEBUG Processing 1/1020 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,036 DEBUG Processing 44/854 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,066 DEBUG Processing 42/896 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,138 DEBUG Processing 143/217 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,249 DEBUG Processing 45/854 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,279 DEBUG Processing 43/896 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,351 DEBUG Processing 144/217 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,461 DEBUG Processing 46/854 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,493 DEBUG Processing 44/896 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,562 DEBUG Processing 145/217 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,672 DEBUG Processing 47/854 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,690 DEBUG Processing 2/1020 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,708 DEBUG Processing 45/896 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,774 DEBUG Processing 146/217 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,887 DEBUG Processing 48/854 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,923 DEBUG Processing 46/896 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,942 DEBUG Processing 3/1020 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,988 DEBUG Processing 147/217 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,099 DEBUG Processing 49/854 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,135 DEBUG Processing 47/896 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,180 DEBUG Processing 4/1020 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,203 DEBUG Processing 148/217 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,310 DEBUG Processing 50/854 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,344 DEBUG Processing 48/896 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,418 DEBUG Processing 5/1020 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,422 DEBUG Processing 149/217 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,519 DEBUG Processing 51/854 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,554 DEBUG Processing 49/896 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,642 DEBUG Processing 150/217 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,659 DEBUG Processing 6/1020 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,729 DEBUG Processing 52/854 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,763 DEBUG Processing 50/896 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,861 DEBUG Processing 151/217 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,900 DEBUG Processing 7/1020 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,941 DEBUG Processing 53/854 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,973 DEBUG Processing 51/896 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,078 DEBUG Processing 152/217 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,141 DEBUG Processing 8/1020 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,156 DEBUG Processing 54/854 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,182 DEBUG Processing 52/896 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,295 DEBUG Processing 153/217 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,370 DEBUG Processing 55/854 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,379 DEBUG Processing 9/1020 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,395 DEBUG Processing 53/896 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,513 DEBUG Processing 154/217 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,585 DEBUG Processing 56/854 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,605 DEBUG Processing 54/896 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,619 DEBUG Processing 10/1020 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,729 DEBUG Processing 155/217 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,801 DEBUG Processing 57/854 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,819 DEBUG Processing 55/896 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,857 DEBUG Processing 11/1020 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,944 DEBUG Processing 156/217 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,016 DEBUG Processing 58/854 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,030 DEBUG Processing 56/896 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,094 DEBUG Processing 12/1020 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,159 DEBUG Processing 157/217 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,227 DEBUG Processing 59/854 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,243 DEBUG Processing 57/896 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,333 DEBUG Processing 13/1020 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,376 DEBUG Processing 158/217 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,437 DEBUG Processing 60/854 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,457 DEBUG Processing 58/896 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,572 DEBUG Processing 14/1020 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,595 DEBUG Processing 159/217 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,647 DEBUG Processing 61/854 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,674 DEBUG Processing 59/896 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,814 DEBUG Processing 15/1020 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,817 DEBUG Processing 160/217 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,862 DEBUG Processing 62/854 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,886 DEBUG Processing 60/896 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,037 DEBUG Processing 161/217 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,055 DEBUG Processing 16/1020 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,075 DEBUG Processing 63/854 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,094 DEBUG Processing 61/896 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,262 DEBUG Processing 162/217 atomic regions from SNP 48461 to 49062 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,291 DEBUG Processing 64/854 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,302 DEBUG Processing 17/1020 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,308 DEBUG Processing 62/896 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,402 DEBUG Segmenting atomic regions: 2025-01-31 09:42:59,485 DEBUG Processing 163/217 atomic regions from SNP 48762 to 49363 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,506 DEBUG Processing 1/474 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,508 DEBUG Processing 65/854 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,521 DEBUG Processing 63/896 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,543 DEBUG Processing 18/1020 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,705 DEBUG Processing 164/217 atomic regions from SNP 49063 to 49664 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,714 DEBUG Processing 2/474 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,727 DEBUG Processing 66/854 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,734 DEBUG Processing 64/896 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,787 DEBUG Processing 19/1020 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,919 DEBUG Processing 3/474 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,923 DEBUG Processing 165/217 atomic regions from SNP 49364 to 49965 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,942 DEBUG Processing 67/854 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,946 DEBUG Processing 65/896 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,040 DEBUG Processing 20/1020 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,126 DEBUG Processing 4/474 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,141 DEBUG Processing 166/217 atomic regions from SNP 49665 to 50266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,161 DEBUG Processing 68/854 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,168 DEBUG Processing 66/896 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,306 DEBUG Processing 21/1020 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,334 DEBUG Processing 5/474 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,363 DEBUG Processing 167/217 atomic regions from SNP 49966 to 50567 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,374 DEBUG Processing 69/854 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,381 DEBUG Processing 67/896 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,543 DEBUG Processing 6/474 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,555 DEBUG Processing 22/1020 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,590 DEBUG Processing 70/854 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,595 DEBUG Processing 168/217 atomic regions from SNP 50267 to 50868 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,595 DEBUG Processing 68/896 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,715 DEBUG Segmenting atomic regions: 2025-01-31 09:43:00,751 DEBUG Processing 7/474 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,795 DEBUG Processing 23/1020 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,807 DEBUG Processing 71/854 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,810 DEBUG Processing 69/896 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,829 DEBUG Processing 169/217 atomic regions from SNP 50568 to 51169 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,856 DEBUG Processing 1/1132 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,962 DEBUG Processing 8/474 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,022 DEBUG Processing 70/896 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,023 DEBUG Processing 72/854 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,037 DEBUG Processing 24/1020 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,064 DEBUG Processing 170/217 atomic regions from SNP 50869 to 51470 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,182 DEBUG Processing 9/474 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,237 DEBUG Processing 71/896 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,241 DEBUG Processing 73/854 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,278 DEBUG Processing 25/1020 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,287 DEBUG Processing 171/217 atomic regions from SNP 51170 to 51771 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,414 DEBUG Processing 10/474 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,452 DEBUG Processing 72/896 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,459 DEBUG Processing 74/854 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,509 DEBUG Processing 172/217 atomic regions from SNP 51471 to 52072 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,522 DEBUG Processing 26/1020 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,573 DEBUG Processing 2/1132 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,643 DEBUG Processing 11/474 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,669 DEBUG Processing 73/896 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,678 DEBUG Processing 75/854 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,733 DEBUG Processing 173/217 atomic regions from SNP 51772 to 52373 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,764 DEBUG Processing 27/1020 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,824 DEBUG Processing 3/1132 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,869 DEBUG Processing 12/474 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,887 DEBUG Processing 74/896 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,895 DEBUG Processing 76/854 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,953 DEBUG Processing 174/217 atomic regions from SNP 52073 to 52674 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,006 DEBUG Processing 28/1020 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,078 DEBUG Processing 4/1132 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,080 DEBUG Processing 13/474 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,104 DEBUG Processing 75/896 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,110 DEBUG Processing 77/854 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,171 DEBUG Processing 175/217 atomic regions from SNP 52374 to 52975 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,244 DEBUG Processing 29/1020 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,286 DEBUG Processing 14/474 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,318 DEBUG Processing 76/896 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,326 DEBUG Processing 78/854 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,329 DEBUG Processing 5/1132 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,390 DEBUG Processing 176/217 atomic regions from SNP 52675 to 53276 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,483 DEBUG Processing 30/1020 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,491 DEBUG Processing 15/474 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,531 DEBUG Processing 77/896 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,542 DEBUG Processing 79/854 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,584 DEBUG Processing 6/1132 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,610 DEBUG Processing 177/217 atomic regions from SNP 52976 to 53577 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,697 DEBUG Processing 16/474 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,720 DEBUG Processing 31/1020 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,744 DEBUG Processing 78/896 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,760 DEBUG Processing 80/854 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,829 DEBUG Processing 178/217 atomic regions from SNP 53277 to 53878 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,840 DEBUG Processing 7/1132 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,917 DEBUG Processing 17/474 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,956 DEBUG Processing 79/896 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,960 DEBUG Processing 32/1020 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,977 DEBUG Processing 81/854 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,045 DEBUG Processing 179/217 atomic regions from SNP 53578 to 54179 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,088 DEBUG Processing 8/1132 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,142 DEBUG Processing 18/474 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,168 DEBUG Processing 80/896 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,200 DEBUG Processing 82/854 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,200 DEBUG Processing 33/1020 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,262 DEBUG Processing 180/217 atomic regions from SNP 53879 to 54480 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,340 DEBUG Processing 9/1132 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,349 DEBUG Processing 19/474 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,381 DEBUG Processing 81/896 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,421 DEBUG Processing 83/854 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,446 DEBUG Processing 34/1020 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,482 DEBUG Processing 181/217 atomic regions from SNP 54180 to 54781 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,557 DEBUG Processing 20/474 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,592 DEBUG Processing 10/1132 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,595 DEBUG Processing 82/896 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,643 DEBUG Processing 84/854 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,695 DEBUG Processing 35/1020 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,704 DEBUG Processing 182/217 atomic regions from SNP 54481 to 55082 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,761 DEBUG Processing 21/474 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,807 DEBUG Processing 83/896 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,844 DEBUG Processing 11/1132 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,860 DEBUG Processing 85/854 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,924 DEBUG Processing 183/217 atomic regions from SNP 54782 to 55383 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,937 DEBUG Processing 36/1020 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,966 DEBUG Processing 22/474 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,018 DEBUG Processing 84/896 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,079 DEBUG Processing 86/854 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,101 DEBUG Processing 12/1132 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,148 DEBUG Processing 184/217 atomic regions from SNP 55083 to 55684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,176 DEBUG Processing 23/474 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,180 DEBUG Processing 37/1020 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,231 DEBUG Processing 85/896 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,296 DEBUG Processing 87/854 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,360 DEBUG Processing 13/1132 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,370 DEBUG Processing 185/217 atomic regions from SNP 55384 to 55985 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,389 DEBUG Processing 24/474 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,422 DEBUG Processing 38/1020 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,447 DEBUG Processing 86/896 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,511 DEBUG Processing 88/854 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,591 DEBUG Processing 186/217 atomic regions from SNP 55685 to 56286 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,598 DEBUG Processing 25/474 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,619 DEBUG Processing 14/1132 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,663 DEBUG Processing 39/1020 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,663 DEBUG Processing 87/896 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,725 DEBUG Processing 89/854 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,806 DEBUG Processing 26/474 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,809 DEBUG Processing 187/217 atomic regions from SNP 55986 to 56587 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,875 DEBUG Processing 15/1132 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,893 DEBUG Processing 88/896 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,907 DEBUG Processing 40/1020 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,942 DEBUG Processing 90/854 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,013 DEBUG Processing 27/474 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,026 DEBUG Processing 188/217 atomic regions from SNP 56287 to 56888 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,130 DEBUG Processing 89/896 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,131 DEBUG Processing 16/1132 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,153 DEBUG Processing 41/1020 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,163 DEBUG Processing 91/854 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,222 DEBUG Processing 28/474 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,242 DEBUG Processing 189/217 atomic regions from SNP 56588 to 57189 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,345 DEBUG Processing 90/896 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,386 DEBUG Processing 92/854 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,389 DEBUG Processing 17/1132 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,399 DEBUG Processing 42/1020 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,430 DEBUG Processing 29/474 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,460 DEBUG Processing 190/217 atomic regions from SNP 56889 to 57490 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,574 DEBUG Processing 91/896 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,609 DEBUG Processing 93/854 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,639 DEBUG Processing 30/474 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,647 DEBUG Processing 43/1020 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,648 DEBUG Processing 18/1132 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,679 DEBUG Processing 191/217 atomic regions from SNP 57190 to 57791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,800 DEBUG Processing 92/896 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,827 DEBUG Processing 94/854 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,848 DEBUG Processing 31/474 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,893 DEBUG Processing 44/1020 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,898 DEBUG Processing 192/217 atomic regions from SNP 57491 to 58092 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,906 DEBUG Processing 19/1132 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,016 DEBUG Processing 93/896 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,042 DEBUG Processing 95/854 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,056 DEBUG Processing 32/474 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,117 DEBUG Processing 193/217 atomic regions from SNP 57792 to 58393 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,137 DEBUG Processing 45/1020 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,163 DEBUG Processing 20/1132 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,232 DEBUG Processing 94/896 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,256 DEBUG Processing 96/854 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,264 DEBUG Processing 33/474 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,335 DEBUG Processing 194/217 atomic regions from SNP 58093 to 58694 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,380 DEBUG Processing 46/1020 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,420 DEBUG Processing 21/1132 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,448 DEBUG Processing 95/896 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,470 DEBUG Processing 97/854 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,472 DEBUG Processing 34/474 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,548 DEBUG Processing 195/217 atomic regions from SNP 58394 to 58995 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,621 DEBUG Processing 47/1020 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,670 DEBUG Processing 96/896 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,678 DEBUG Processing 22/1132 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,686 DEBUG Processing 35/474 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,688 DEBUG Processing 98/854 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,765 DEBUG Processing 196/217 atomic regions from SNP 58695 to 59296 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,862 DEBUG Processing 48/1020 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,891 DEBUG Processing 97/896 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,900 DEBUG Processing 36/474 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,907 DEBUG Processing 99/854 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,939 DEBUG Processing 23/1132 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,983 DEBUG Processing 197/217 atomic regions from SNP 58996 to 59597 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,103 DEBUG Processing 49/1020 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,109 DEBUG Processing 98/896 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,125 DEBUG Processing 100/854 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,128 DEBUG Processing 37/474 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,199 DEBUG Processing 24/1132 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,204 DEBUG Processing 198/217 atomic regions from SNP 59297 to 59898 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,326 DEBUG Processing 99/896 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,336 DEBUG Processing 38/474 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,341 DEBUG Processing 101/854 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,346 DEBUG Processing 50/1020 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,424 DEBUG Processing 199/217 atomic regions from SNP 59598 to 60199 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,459 DEBUG Processing 25/1132 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,541 DEBUG Processing 100/896 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,543 DEBUG Processing 39/474 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,558 DEBUG Processing 102/854 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,587 DEBUG Processing 51/1020 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,644 DEBUG Processing 200/217 atomic regions from SNP 59899 to 60500 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,717 DEBUG Processing 26/1132 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,753 DEBUG Processing 40/474 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,760 DEBUG Processing 101/896 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,771 DEBUG Processing 103/854 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,828 DEBUG Processing 52/1020 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,862 DEBUG Processing 201/217 atomic regions from SNP 60200 to 60801 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,962 DEBUG Processing 41/474 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,975 DEBUG Processing 27/1132 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,979 DEBUG Processing 102/896 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,984 DEBUG Processing 104/854 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,069 DEBUG Processing 53/1020 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,078 DEBUG Processing 202/217 atomic regions from SNP 60501 to 61102 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,177 DEBUG Processing 42/474 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,203 DEBUG Processing 103/896 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,205 DEBUG Processing 105/854 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,236 DEBUG Processing 28/1132 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,294 DEBUG Processing 203/217 atomic regions from SNP 60802 to 61403 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,309 DEBUG Processing 54/1020 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,387 DEBUG Processing 43/474 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,421 DEBUG Processing 104/896 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,423 DEBUG Processing 106/854 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,495 DEBUG Processing 29/1132 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,508 DEBUG Processing 204/217 atomic regions from SNP 61103 to 61704 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,549 DEBUG Processing 55/1020 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,602 DEBUG Processing 44/474 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,651 DEBUG Processing 105/896 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,653 DEBUG Processing 107/854 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,726 DEBUG Processing 205/217 atomic regions from SNP 61404 to 62005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,754 DEBUG Processing 30/1132 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,788 DEBUG Processing 56/1020 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,810 DEBUG Processing 45/474 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,868 DEBUG Processing 106/896 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,876 DEBUG Processing 108/854 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,944 DEBUG Processing 206/217 atomic regions from SNP 61705 to 62306 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,011 DEBUG Processing 31/1132 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,016 DEBUG Processing 46/474 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,030 DEBUG Processing 57/1020 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,083 DEBUG Processing 107/896 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,096 DEBUG Processing 109/854 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,161 DEBUG Processing 207/217 atomic regions from SNP 62006 to 62607 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,227 DEBUG Processing 47/474 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,269 DEBUG Processing 32/1132 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,273 DEBUG Processing 58/1020 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,301 DEBUG Processing 108/896 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,312 DEBUG Processing 110/854 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,376 DEBUG Processing 208/217 atomic regions from SNP 62307 to 62908 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,436 DEBUG Processing 48/474 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,519 DEBUG Processing 109/896 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,521 DEBUG Processing 59/1020 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,531 DEBUG Processing 33/1132 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,533 DEBUG Processing 111/854 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,606 DEBUG Processing 209/217 atomic regions from SNP 62608 to 63209 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,645 DEBUG Processing 49/474 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,739 DEBUG Processing 110/896 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,770 DEBUG Processing 60/1020 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,771 DEBUG Processing 112/854 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,796 DEBUG Processing 34/1132 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,850 DEBUG Processing 210/217 atomic regions from SNP 62909 to 63510 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,855 DEBUG Processing 50/474 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,955 DEBUG Processing 111/896 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,013 DEBUG Processing 61/1020 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,019 DEBUG Processing 113/854 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,053 DEBUG Processing 35/1132 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,066 DEBUG Processing 51/474 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,071 DEBUG Processing 211/217 atomic regions from SNP 63210 to 63811 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,171 DEBUG Processing 112/896 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,255 DEBUG Processing 62/1020 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,267 DEBUG Processing 114/854 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,279 DEBUG Processing 52/474 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,304 DEBUG Processing 212/217 atomic regions from SNP 63511 to 64112 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,311 DEBUG Processing 36/1132 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,385 DEBUG Processing 113/896 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,508 DEBUG Processing 53/474 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,509 DEBUG Processing 63/1020 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,514 DEBUG Processing 115/854 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,565 DEBUG Processing 213/217 atomic regions from SNP 63812 to 64413 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,588 DEBUG Processing 37/1132 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,608 DEBUG Processing 114/896 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,718 DEBUG Processing 54/474 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,755 DEBUG Processing 64/1020 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,756 DEBUG Processing 116/854 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,819 DEBUG Processing 214/217 atomic regions from SNP 64113 to 64714 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,830 DEBUG Processing 115/896 atomic regions from SNP 34314 to 34914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,869 DEBUG Processing 38/1132 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,926 DEBUG Processing 55/474 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,996 DEBUG Processing 117/854 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,997 DEBUG Processing 65/1020 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,049 DEBUG Processing 116/896 atomic regions from SNP 34614 to 35214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,071 DEBUG Processing 215/217 atomic regions from SNP 64414 to 65015 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,136 DEBUG Processing 56/474 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:11,137 DEBUG Processing 39/1132 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,216 DEBUG Processing 118/854 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,244 DEBUG Processing 66/1020 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,271 DEBUG Processing 117/896 atomic regions from SNP 34914 to 35514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,308 DEBUG Processing 216/217 atomic regions from SNP 64715 to 65316 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,346 DEBUG Processing 57/474 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:11,391 DEBUG Processing 40/1132 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,431 DEBUG Processing 119/854 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,486 DEBUG Processing 118/896 atomic regions from SNP 35214 to 35814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,489 DEBUG Processing 67/1020 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,552 DEBUG Processing 217/217 atomic regions from SNP 65016 to 65617 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,561 DEBUG Processing 58/474 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:11,642 DEBUG Processing 41/1132 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,673 DEBUG Processing 120/854 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,702 DEBUG Unique SNPs positions in subchromosome 1: 65618 2025-01-31 09:43:11,702 DEBUG Processing 119/896 atomic regions from SNP 35514 to 36114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,734 DEBUG Processing 68/1020 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,779 DEBUG Processing 59/474 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:11,852 DEBUG Subchromosome time: 56.02381158294156, subchromosome SNPs: 65618 2025-01-31 09:43:11,895 DEBUG Processing 121/854 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,899 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:11,901 DEBUG Processing 42/1132 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,918 DEBUG Processing 120/896 atomic regions from SNP 35814 to 36414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,977 DEBUG Processing 69/1020 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,990 DEBUG Processing 60/474 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,121 DEBUG Processing 122/854 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,137 DEBUG Processing 121/896 atomic regions from SNP 36114 to 36714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,160 DEBUG Processing 43/1132 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,204 DEBUG Processing 61/474 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,233 DEBUG Processing 70/1020 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,353 DEBUG Processing 123/854 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,360 DEBUG Processing 122/896 atomic regions from SNP 36414 to 37014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,420 DEBUG Processing 62/474 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,425 DEBUG Processing 44/1132 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,488 DEBUG Processing 71/1020 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,582 DEBUG Processing 124/854 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,586 DEBUG Processing 123/896 atomic regions from SNP 36714 to 37314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,643 DEBUG Processing 63/474 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,685 DEBUG Processing 45/1132 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,745 DEBUG Processing 72/1020 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,816 DEBUG Processing 125/854 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,816 DEBUG Processing 124/896 atomic regions from SNP 37014 to 37614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,869 DEBUG Processing 64/474 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,958 DEBUG Processing 46/1132 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,021 DEBUG Processing 73/1020 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,053 DEBUG Processing 126/854 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,062 DEBUG Processing 125/896 atomic regions from SNP 37314 to 37914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,103 DEBUG Processing 65/474 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:13,229 DEBUG Processing 47/1132 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,286 DEBUG Processing 74/1020 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,297 DEBUG Processing 126/896 atomic regions from SNP 37614 to 38214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,299 DEBUG Processing 127/854 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,342 DEBUG Processing 66/474 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:13,494 DEBUG Processing 48/1132 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,525 DEBUG Processing 128/854 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,527 DEBUG Processing 127/896 atomic regions from SNP 37914 to 38514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,542 DEBUG Processing 75/1020 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,559 DEBUG Processing 67/474 atomic regions from SNP 19866 to 20466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:13,747 DEBUG Processing 129/854 atomic regions from SNP 38528 to 39129 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,750 DEBUG Processing 128/896 atomic regions from SNP 38214 to 38814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,751 DEBUG Processing 49/1132 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,774 DEBUG Processing 68/474 atomic regions from SNP 20166 to 20766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:13,792 DEBUG Processing 76/1020 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,970 DEBUG Processing 130/854 atomic regions from SNP 38829 to 39430 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,973 DEBUG Processing 129/896 atomic regions from SNP 38514 to 39114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,990 DEBUG Processing 69/474 atomic regions from SNP 20466 to 21066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:14,008 DEBUG Processing 50/1132 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,037 DEBUG Processing 77/1020 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,191 DEBUG Processing 131/854 atomic regions from SNP 39130 to 39731 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,191 DEBUG Processing 130/896 atomic regions from SNP 38814 to 39414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,202 DEBUG Processing 70/474 atomic regions from SNP 20766 to 21366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:14,267 DEBUG Processing 51/1132 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,284 DEBUG Processing 78/1020 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,406 DEBUG Processing 132/854 atomic regions from SNP 39431 to 40032 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,409 DEBUG Processing 131/896 atomic regions from SNP 39114 to 39714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,433 DEBUG Processing 71/474 atomic regions from SNP 21066 to 21666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:14,524 DEBUG Processing 52/1132 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,528 DEBUG Processing 79/1020 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,616 DEBUG Processing 133/854 atomic regions from SNP 39732 to 40333 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,622 DEBUG Processing 132/896 atomic regions from SNP 39414 to 40014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,672 DEBUG Processing 72/474 atomic regions from SNP 21366 to 21966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:14,772 DEBUG Processing 80/1020 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,778 DEBUG Processing 53/1132 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,828 DEBUG Processing 134/854 atomic regions from SNP 40033 to 40634 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,837 DEBUG Processing 133/896 atomic regions from SNP 39714 to 40314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,891 DEBUG Processing 73/474 atomic regions from SNP 21666 to 22266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,017 DEBUG Processing 81/1020 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,032 DEBUG Processing 54/1132 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,050 DEBUG Processing 135/854 atomic regions from SNP 40334 to 40935 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,056 DEBUG Processing 134/896 atomic regions from SNP 40014 to 40614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,101 DEBUG Processing 74/474 atomic regions from SNP 21966 to 22566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,268 DEBUG Processing 82/1020 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,275 DEBUG Processing 136/854 atomic regions from SNP 40635 to 41236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,280 DEBUG Processing 135/896 atomic regions from SNP 40314 to 40914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,293 DEBUG Processing 55/1132 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,315 DEBUG Processing 75/474 atomic regions from SNP 22266 to 22866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,496 DEBUG Processing 137/854 atomic regions from SNP 40936 to 41537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,498 DEBUG Processing 136/896 atomic regions from SNP 40614 to 41214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,514 DEBUG Processing 83/1020 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,526 DEBUG Processing 76/474 atomic regions from SNP 22566 to 23166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,546 DEBUG Processing 56/1132 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,720 DEBUG Processing 137/896 atomic regions from SNP 40914 to 41514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,721 DEBUG Processing 138/854 atomic regions from SNP 41237 to 41838 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,740 DEBUG Processing 77/474 atomic regions from SNP 22866 to 23466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,763 DEBUG Processing 84/1020 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,805 DEBUG Processing 57/1132 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,944 DEBUG Processing 138/896 atomic regions from SNP 41214 to 41814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,946 DEBUG Processing 139/854 atomic regions from SNP 41538 to 42139 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,957 DEBUG Processing 78/474 atomic regions from SNP 23166 to 23766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,018 DEBUG Processing 85/1020 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,075 DEBUG Processing 58/1132 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,172 DEBUG Processing 139/896 atomic regions from SNP 41514 to 42114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,176 DEBUG Processing 140/854 atomic regions from SNP 41839 to 42440 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,179 DEBUG Processing 79/474 atomic regions from SNP 23466 to 24066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,284 DEBUG Processing 86/1020 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,369 DEBUG Processing 59/1132 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,437 DEBUG Processing 140/896 atomic regions from SNP 41814 to 42414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,511 DEBUG Processing 80/474 atomic regions from SNP 23766 to 24366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,516 DEBUG Processing 141/854 atomic regions from SNP 42140 to 42741 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,664 DEBUG Processing 87/1020 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,707 DEBUG Processing 60/1132 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,708 DEBUG Processing 141/896 atomic regions from SNP 42114 to 42714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,741 DEBUG Processing 81/474 atomic regions from SNP 24066 to 24666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,756 DEBUG Processing 142/854 atomic regions from SNP 42441 to 43042 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,998 DEBUG Processing 88/1020 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,076 DEBUG Processing 82/474 atomic regions from SNP 24366 to 24966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:17,093 DEBUG Processing 142/896 atomic regions from SNP 42414 to 43014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,109 DEBUG Processing 143/854 atomic regions from SNP 42742 to 43343 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,111 DEBUG Processing 61/1132 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,407 DEBUG Processing 89/1020 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,434 DEBUG Processing 83/474 atomic regions from SNP 24666 to 25266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:17,462 DEBUG Processing 144/854 atomic regions from SNP 43043 to 43644 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,486 DEBUG Processing 62/1132 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,526 DEBUG Processing 143/896 atomic regions from SNP 42714 to 43314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,778 DEBUG Processing 90/1020 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,817 DEBUG Processing 145/854 atomic regions from SNP 43344 to 43945 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,822 DEBUG Processing 84/474 atomic regions from SNP 24966 to 25566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:17,859 DEBUG Processing 63/1132 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,899 DEBUG Processing 144/896 atomic regions from SNP 43014 to 43614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,084 DEBUG Processing 146/854 atomic regions from SNP 43645 to 44246 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,088 DEBUG Processing 91/1020 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,095 DEBUG Processing 85/474 atomic regions from SNP 25266 to 25866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,140 DEBUG Processing 64/1132 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,196 DEBUG Processing 145/896 atomic regions from SNP 43314 to 43914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,334 DEBUG Processing 86/474 atomic regions from SNP 25566 to 26166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,345 DEBUG Processing 147/854 atomic regions from SNP 43946 to 44547 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,393 DEBUG Processing 92/1020 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,413 DEBUG Processing 65/1132 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,422 DEBUG Processing 146/896 atomic regions from SNP 43614 to 44214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,621 DEBUG Processing 87/474 atomic regions from SNP 25866 to 26466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,645 DEBUG Processing 148/854 atomic regions from SNP 44247 to 44848 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,732 DEBUG Processing 147/896 atomic regions from SNP 43914 to 44514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,738 DEBUG Processing 93/1020 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,746 DEBUG Processing 66/1132 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,908 DEBUG Processing 88/474 atomic regions from SNP 26166 to 26766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,956 DEBUG Processing 149/854 atomic regions from SNP 44548 to 45149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,040 DEBUG Processing 148/896 atomic regions from SNP 44214 to 44814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,081 DEBUG Processing 94/1020 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,082 DEBUG Processing 67/1132 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,217 DEBUG Processing 89/474 atomic regions from SNP 26466 to 27066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:19,286 DEBUG Processing 150/854 atomic regions from SNP 44849 to 45450 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,357 DEBUG Processing 149/896 atomic regions from SNP 44514 to 45114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,395 DEBUG Processing 95/1020 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,399 DEBUG Processing 68/1132 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,485 DEBUG Processing 90/474 atomic regions from SNP 26766 to 27366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:19,613 DEBUG Processing 151/854 atomic regions from SNP 45150 to 45751 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,657 DEBUG Processing 150/896 atomic regions from SNP 44814 to 45414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,693 DEBUG Processing 96/1020 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,706 DEBUG Processing 69/1132 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,714 DEBUG Processing 91/474 atomic regions from SNP 27066 to 27666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:19,885 DEBUG Processing 152/854 atomic regions from SNP 45451 to 46052 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,898 DEBUG Processing 151/896 atomic regions from SNP 45114 to 45714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,989 DEBUG Processing 92/474 atomic regions from SNP 27366 to 27966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:19,993 DEBUG Processing 97/1020 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,018 DEBUG Processing 70/1132 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,160 DEBUG Processing 152/896 atomic regions from SNP 45414 to 46014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,172 DEBUG Processing 153/854 atomic regions from SNP 45752 to 46353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,288 DEBUG Processing 93/474 atomic regions from SNP 27666 to 28266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:20,315 DEBUG Processing 98/1020 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,341 DEBUG Processing 71/1132 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,452 DEBUG Processing 154/854 atomic regions from SNP 46053 to 46654 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,456 DEBUG Processing 153/896 atomic regions from SNP 45714 to 46314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,590 DEBUG Processing 94/474 atomic regions from SNP 27966 to 28566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:20,625 DEBUG Processing 99/1020 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,649 DEBUG Processing 72/1132 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,690 DEBUG Processing 155/854 atomic regions from SNP 46354 to 46955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,722 DEBUG Processing 154/896 atomic regions from SNP 46014 to 46614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,812 DEBUG Processing 95/474 atomic regions from SNP 28266 to 28866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:20,880 DEBUG Processing 100/1020 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,913 DEBUG Processing 73/1132 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,916 DEBUG Processing 156/854 atomic regions from SNP 46655 to 47256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,963 DEBUG Processing 155/896 atomic regions from SNP 46314 to 46914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,042 DEBUG Processing 96/474 atomic regions from SNP 28566 to 29166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,134 DEBUG Processing 101/1020 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,158 DEBUG Processing 157/854 atomic regions from SNP 46956 to 47557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,187 DEBUG Processing 74/1132 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,209 DEBUG Processing 156/896 atomic regions from SNP 46614 to 47214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,261 DEBUG Processing 97/474 atomic regions from SNP 28866 to 29466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,389 DEBUG Processing 102/1020 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,423 DEBUG Processing 158/854 atomic regions from SNP 47257 to 47858 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,474 DEBUG Processing 75/1132 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,486 DEBUG Processing 157/896 atomic regions from SNP 46914 to 47514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,554 DEBUG Processing 98/474 atomic regions from SNP 29166 to 29766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,661 DEBUG Processing 103/1020 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,689 DEBUG Processing 159/854 atomic regions from SNP 47558 to 48159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,776 DEBUG Processing 158/896 atomic regions from SNP 47214 to 47814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,799 DEBUG Processing 76/1132 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,868 DEBUG Processing 99/474 atomic regions from SNP 29466 to 30066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,963 DEBUG Processing 104/1020 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,967 DEBUG Processing 160/854 atomic regions from SNP 47859 to 48460 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,061 DEBUG Processing 159/896 atomic regions from SNP 47514 to 48114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,130 DEBUG Processing 77/1132 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,183 DEBUG Processing 100/474 atomic regions from SNP 29766 to 30366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:22,275 DEBUG Processing 161/854 atomic regions from SNP 48160 to 48761 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,294 DEBUG Processing 105/1020 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,370 DEBUG Processing 160/896 atomic regions from SNP 47814 to 48414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,466 DEBUG Processing 78/1132 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,517 DEBUG Processing 101/474 atomic regions from SNP 30066 to 30666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:22,613 DEBUG Processing 162/854 atomic regions from SNP 48461 to 49062 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,633 DEBUG Processing 106/1020 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,699 DEBUG Processing 161/896 atomic regions from SNP 48114 to 48714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,801 DEBUG Processing 79/1132 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,843 DEBUG Processing 102/474 atomic regions from SNP 30366 to 30966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:22,957 DEBUG Processing 163/854 atomic regions from SNP 48762 to 49363 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,974 DEBUG Processing 107/1020 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,027 DEBUG Processing 162/896 atomic regions from SNP 48414 to 49014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,155 DEBUG Processing 80/1132 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,173 DEBUG Processing 103/474 atomic regions from SNP 30666 to 31266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:23,319 DEBUG Processing 164/854 atomic regions from SNP 49063 to 49664 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,329 DEBUG Processing 108/1020 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,358 DEBUG Processing 163/896 atomic regions from SNP 48714 to 49314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,502 DEBUG Processing 81/1132 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,507 DEBUG Processing 104/474 atomic regions from SNP 30966 to 31566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:23,670 DEBUG Processing 165/854 atomic regions from SNP 49364 to 49965 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,681 DEBUG Processing 109/1020 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,700 DEBUG Processing 164/896 atomic regions from SNP 49014 to 49614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,845 DEBUG Processing 105/474 atomic regions from SNP 31266 to 31866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:23,865 DEBUG Processing 82/1132 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,031 DEBUG Processing 166/854 atomic regions from SNP 49665 to 50266 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,042 DEBUG Processing 110/1020 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,064 DEBUG Processing 165/896 atomic regions from SNP 49314 to 49914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,157 DEBUG Processing 106/474 atomic regions from SNP 31566 to 32166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:24,201 DEBUG Processing 83/1132 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,396 DEBUG Processing 167/854 atomic regions from SNP 49966 to 50567 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,399 DEBUG Processing 111/1020 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,413 DEBUG Processing 166/896 atomic regions from SNP 49614 to 50214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,471 DEBUG Processing 107/474 atomic regions from SNP 31866 to 32466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:24,541 DEBUG Processing 84/1132 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,764 DEBUG Processing 112/1020 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,767 DEBUG Processing 168/854 atomic regions from SNP 50267 to 50868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,778 DEBUG Processing 167/896 atomic regions from SNP 49914 to 50514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,818 DEBUG Processing 108/474 atomic regions from SNP 32166 to 32766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:24,901 DEBUG Processing 85/1132 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,134 DEBUG Processing 169/854 atomic regions from SNP 50568 to 51169 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,158 DEBUG Processing 113/1020 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,171 DEBUG Processing 168/896 atomic regions from SNP 50214 to 50814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,182 DEBUG Processing 109/474 atomic regions from SNP 32466 to 33066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:25,282 DEBUG Processing 86/1132 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,422 DEBUG Processing 170/854 atomic regions from SNP 50869 to 51470 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,511 DEBUG Processing 114/1020 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,527 DEBUG Processing 110/474 atomic regions from SNP 32766 to 33366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:25,531 DEBUG Processing 169/896 atomic regions from SNP 50514 to 51114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,628 DEBUG Processing 87/1132 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,717 DEBUG Processing 171/854 atomic regions from SNP 51170 to 51771 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,822 DEBUG Processing 115/1020 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,860 DEBUG Processing 111/474 atomic regions from SNP 33066 to 33666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:25,882 DEBUG Processing 170/896 atomic regions from SNP 50814 to 51414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,974 DEBUG Processing 88/1132 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,051 DEBUG Processing 172/854 atomic regions from SNP 51471 to 52072 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,146 DEBUG Processing 116/1020 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,187 DEBUG Processing 112/474 atomic regions from SNP 33366 to 33966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:26,221 DEBUG Processing 171/896 atomic regions from SNP 51114 to 51714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,318 DEBUG Processing 89/1132 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,410 DEBUG Processing 173/854 atomic regions from SNP 51772 to 52373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,475 DEBUG Processing 117/1020 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,500 DEBUG Processing 113/474 atomic regions from SNP 33666 to 34266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:26,550 DEBUG Processing 172/896 atomic regions from SNP 51414 to 52014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,666 DEBUG Processing 90/1132 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,736 DEBUG Processing 174/854 atomic regions from SNP 52073 to 52674 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,820 DEBUG Processing 118/1020 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,823 DEBUG Processing 114/474 atomic regions from SNP 33966 to 34566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:26,903 DEBUG Processing 173/896 atomic regions from SNP 51714 to 52314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,024 DEBUG Processing 91/1132 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,084 DEBUG Processing 175/854 atomic regions from SNP 52374 to 52975 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,170 DEBUG Processing 115/474 atomic regions from SNP 34266 to 34866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:27,172 DEBUG Processing 119/1020 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,260 DEBUG Processing 174/896 atomic regions from SNP 52014 to 52614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,384 DEBUG Processing 92/1132 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,469 DEBUG Processing 176/854 atomic regions from SNP 52675 to 53276 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,522 DEBUG Processing 116/474 atomic regions from SNP 34566 to 35166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:27,537 DEBUG Processing 120/1020 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,630 DEBUG Processing 175/896 atomic regions from SNP 52314 to 52914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,745 DEBUG Processing 93/1132 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,822 DEBUG Processing 177/854 atomic regions from SNP 52976 to 53577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,869 DEBUG Processing 117/474 atomic regions from SNP 34866 to 35466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:27,897 DEBUG Processing 121/1020 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,993 DEBUG Processing 176/896 atomic regions from SNP 52614 to 53214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,131 DEBUG Processing 94/1132 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,177 DEBUG Processing 178/854 atomic regions from SNP 53277 to 53878 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,229 DEBUG Processing 118/474 atomic regions from SNP 35166 to 35766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:28,271 DEBUG Processing 122/1020 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,363 DEBUG Processing 177/896 atomic regions from SNP 52914 to 53514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,528 DEBUG Processing 95/1132 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,539 DEBUG Processing 179/854 atomic regions from SNP 53578 to 54179 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,588 DEBUG Processing 119/474 atomic regions from SNP 35466 to 36066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:28,634 DEBUG Processing 123/1020 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,721 DEBUG Processing 178/896 atomic regions from SNP 53214 to 53814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,918 DEBUG Processing 180/854 atomic regions from SNP 53879 to 54480 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,949 DEBUG Processing 96/1132 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,967 DEBUG Processing 120/474 atomic regions from SNP 35766 to 36366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:29,032 DEBUG Processing 124/1020 atomic regions from SNP 37023 to 37624 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,072 DEBUG Processing 179/896 atomic regions from SNP 53514 to 54114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,211 DEBUG Processing 181/854 atomic regions from SNP 54180 to 54781 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,289 DEBUG Processing 97/1132 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,293 DEBUG Processing 121/474 atomic regions from SNP 36066 to 36666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:29,368 DEBUG Processing 125/1020 atomic regions from SNP 37324 to 37925 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,379 DEBUG Processing 180/896 atomic regions from SNP 53814 to 54414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,521 DEBUG Processing 182/854 atomic regions from SNP 54481 to 55082 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,625 DEBUG Processing 122/474 atomic regions from SNP 36366 to 36966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:29,659 DEBUG Processing 98/1132 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,705 DEBUG Processing 181/896 atomic regions from SNP 54114 to 54714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,708 DEBUG Processing 126/1020 atomic regions from SNP 37625 to 38226 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,759 DEBUG Processing 183/854 atomic regions from SNP 54782 to 55383 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,953 DEBUG Processing 123/474 atomic regions from SNP 36666 to 37266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:30,019 DEBUG Processing 99/1132 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,029 DEBUG Processing 182/896 atomic regions from SNP 54414 to 55014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,032 DEBUG Processing 184/854 atomic regions from SNP 55083 to 55684 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,047 DEBUG Processing 127/1020 atomic regions from SNP 37926 to 38527 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,170 DEBUG Processing 124/474 atomic regions from SNP 36966 to 37566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:30,295 DEBUG Processing 183/896 atomic regions from SNP 54714 to 55314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,323 DEBUG Processing 100/1132 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,333 DEBUG Processing 185/854 atomic regions from SNP 55384 to 55985 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,386 DEBUG Processing 128/1020 atomic regions from SNP 38227 to 38828 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,474 DEBUG Processing 125/474 atomic regions from SNP 37266 to 37866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:30,608 DEBUG Processing 184/896 atomic regions from SNP 55014 to 55614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,654 DEBUG Processing 101/1132 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,680 DEBUG Processing 186/854 atomic regions from SNP 55685 to 56286 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,742 DEBUG Processing 129/1020 atomic regions from SNP 38528 to 39129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,805 DEBUG Processing 126/474 atomic regions from SNP 37566 to 38166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:30,939 DEBUG Processing 185/896 atomic regions from SNP 55314 to 55914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,003 DEBUG Processing 102/1132 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,048 DEBUG Processing 187/854 atomic regions from SNP 55986 to 56587 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,135 DEBUG Processing 130/1020 atomic regions from SNP 38829 to 39430 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,153 DEBUG Processing 127/474 atomic regions from SNP 37866 to 38466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:31,288 DEBUG Processing 186/896 atomic regions from SNP 55614 to 56214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,362 DEBUG Processing 103/1132 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,388 DEBUG Processing 188/854 atomic regions from SNP 56287 to 56888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,446 DEBUG Processing 128/474 atomic regions from SNP 38166 to 38766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:31,490 DEBUG Processing 131/1020 atomic regions from SNP 39130 to 39731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,580 DEBUG Processing 187/896 atomic regions from SNP 55914 to 56514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,690 DEBUG Processing 104/1132 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,726 DEBUG Processing 189/854 atomic regions from SNP 56588 to 57189 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,774 DEBUG Processing 129/474 atomic regions from SNP 38466 to 39066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:31,861 DEBUG Processing 132/1020 atomic regions from SNP 39431 to 40032 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,882 DEBUG Processing 188/896 atomic regions from SNP 56214 to 56814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,033 DEBUG Processing 105/1132 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,039 DEBUG Processing 190/854 atomic regions from SNP 56889 to 57490 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,117 DEBUG Processing 130/474 atomic regions from SNP 38766 to 39366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:32,203 DEBUG Processing 133/1020 atomic regions from SNP 39732 to 40333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,210 DEBUG Processing 189/896 atomic regions from SNP 56514 to 57114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,306 DEBUG Processing 191/854 atomic regions from SNP 57190 to 57791 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,341 DEBUG Processing 106/1132 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,428 DEBUG Processing 131/474 atomic regions from SNP 39066 to 39666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:32,505 DEBUG Processing 190/896 atomic regions from SNP 56814 to 57414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,529 DEBUG Processing 134/1020 atomic regions from SNP 40033 to 40634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,562 DEBUG Processing 192/854 atomic regions from SNP 57491 to 58092 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,620 DEBUG Processing 107/1132 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,652 DEBUG Processing 132/474 atomic regions from SNP 39366 to 39966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:32,744 DEBUG Processing 191/896 atomic regions from SNP 57114 to 57714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,785 DEBUG Processing 193/854 atomic regions from SNP 57792 to 58393 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,820 DEBUG Processing 135/1020 atomic regions from SNP 40334 to 40935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,871 DEBUG Processing 133/474 atomic regions from SNP 39666 to 40266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:32,893 DEBUG Processing 108/1132 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,965 DEBUG Processing 192/896 atomic regions from SNP 57414 to 58014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,009 DEBUG Processing 194/854 atomic regions from SNP 58093 to 58694 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,091 DEBUG Processing 134/474 atomic regions from SNP 39966 to 40566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:33,098 DEBUG Processing 136/1020 atomic regions from SNP 40635 to 41236 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,151 DEBUG Processing 109/1132 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,190 DEBUG Processing 193/896 atomic regions from SNP 57714 to 58314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,231 DEBUG Processing 195/854 atomic regions from SNP 58394 to 58995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,314 DEBUG Processing 135/474 atomic regions from SNP 40266 to 40866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:33,375 DEBUG Processing 137/1020 atomic regions from SNP 40936 to 41537 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,414 DEBUG Processing 110/1132 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,421 DEBUG Processing 194/896 atomic regions from SNP 58014 to 58614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,456 DEBUG Processing 196/854 atomic regions from SNP 58695 to 59296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,527 DEBUG Processing 136/474 atomic regions from SNP 40566 to 41166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:33,650 DEBUG Processing 195/896 atomic regions from SNP 58314 to 58914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,659 DEBUG Processing 138/1020 atomic regions from SNP 41237 to 41838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,679 DEBUG Processing 111/1132 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,684 DEBUG Processing 197/854 atomic regions from SNP 58996 to 59597 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,738 DEBUG Processing 137/474 atomic regions from SNP 40866 to 41466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:33,881 DEBUG Processing 196/896 atomic regions from SNP 58614 to 59214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,920 DEBUG Processing 198/854 atomic regions from SNP 59297 to 59898 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,934 DEBUG Processing 139/1020 atomic regions from SNP 41538 to 42139 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,946 DEBUG Processing 112/1132 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,952 DEBUG Processing 138/474 atomic regions from SNP 41166 to 41766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:34,112 DEBUG Processing 197/896 atomic regions from SNP 58914 to 59514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,153 DEBUG Processing 199/854 atomic regions from SNP 59598 to 60199 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,169 DEBUG Processing 139/474 atomic regions from SNP 41466 to 42066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:34,212 DEBUG Processing 113/1132 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,214 DEBUG Processing 140/1020 atomic regions from SNP 41839 to 42440 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,343 DEBUG Processing 198/896 atomic regions from SNP 59214 to 59814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,396 DEBUG Processing 200/854 atomic regions from SNP 59899 to 60500 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,397 DEBUG Processing 140/474 atomic regions from SNP 41766 to 42366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:34,478 DEBUG Processing 114/1132 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,506 DEBUG Processing 141/1020 atomic regions from SNP 42140 to 42741 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,608 DEBUG Processing 199/896 atomic regions from SNP 59514 to 60114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,669 DEBUG Processing 141/474 atomic regions from SNP 42066 to 42666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:34,670 DEBUG Processing 201/854 atomic regions from SNP 60200 to 60801 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,783 DEBUG Processing 115/1132 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,815 DEBUG Processing 142/1020 atomic regions from SNP 42441 to 43042 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,858 DEBUG Processing 200/896 atomic regions from SNP 59814 to 60414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,906 DEBUG Processing 142/474 atomic regions from SNP 42366 to 42966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:34,911 DEBUG Processing 202/854 atomic regions from SNP 60501 to 61102 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,046 DEBUG Processing 116/1132 atomic regions from SNP 34615 to 35216 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,086 DEBUG Processing 201/896 atomic regions from SNP 60114 to 60714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,094 DEBUG Processing 143/1020 atomic regions from SNP 42742 to 43343 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,131 DEBUG Processing 143/474 atomic regions from SNP 42666 to 43266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:35,142 DEBUG Processing 203/854 atomic regions from SNP 60802 to 61403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,145 DEBUG Segmenting atomic regions: 2025-01-31 09:43:35,256 DEBUG Processing 1/647 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,320 DEBUG Processing 117/1132 atomic regions from SNP 34916 to 35517 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,331 DEBUG Processing 202/896 atomic regions from SNP 60414 to 61014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,367 DEBUG Processing 144/474 atomic regions from SNP 42966 to 43566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:35,382 DEBUG Processing 204/854 atomic regions from SNP 61103 to 61704 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,392 DEBUG Processing 144/1020 atomic regions from SNP 43043 to 43644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,514 DEBUG Processing 2/647 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,563 DEBUG Processing 203/896 atomic regions from SNP 60714 to 61314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,595 DEBUG Processing 118/1132 atomic regions from SNP 35217 to 35818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,596 DEBUG Processing 145/474 atomic regions from SNP 43266 to 43866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:35,621 DEBUG Processing 205/854 atomic regions from SNP 61404 to 62005 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,682 DEBUG Processing 145/1020 atomic regions from SNP 43344 to 43945 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,759 DEBUG Processing 3/647 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,786 DEBUG Processing 204/896 atomic regions from SNP 61014 to 61614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,815 DEBUG Processing 146/474 atomic regions from SNP 43566 to 44166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:35,851 DEBUG Processing 206/854 atomic regions from SNP 61705 to 62306 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,858 DEBUG Processing 119/1132 atomic regions from SNP 35518 to 36119 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,943 DEBUG Processing 146/1020 atomic regions from SNP 43645 to 44246 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,981 DEBUG Processing 4/647 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,009 DEBUG Processing 205/896 atomic regions from SNP 61314 to 61914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,034 DEBUG Processing 147/474 atomic regions from SNP 43866 to 44466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,076 DEBUG Processing 207/854 atomic regions from SNP 62006 to 62607 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,121 DEBUG Processing 120/1132 atomic regions from SNP 35819 to 36420 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,221 DEBUG Processing 147/1020 atomic regions from SNP 43946 to 44547 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,234 DEBUG Processing 206/896 atomic regions from SNP 61614 to 62214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,237 DEBUG Processing 5/647 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,253 DEBUG Processing 148/474 atomic regions from SNP 44166 to 44766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,308 DEBUG Processing 208/854 atomic regions from SNP 62307 to 62908 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,388 DEBUG Processing 121/1132 atomic regions from SNP 36120 to 36721 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,456 DEBUG Processing 207/896 atomic regions from SNP 61914 to 62514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,467 DEBUG Processing 149/474 atomic regions from SNP 44466 to 45066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,494 DEBUG Processing 148/1020 atomic regions from SNP 44247 to 44848 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,494 DEBUG Processing 6/647 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,529 DEBUG Processing 209/854 atomic regions from SNP 62608 to 63209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,643 DEBUG Processing 122/1132 atomic regions from SNP 36421 to 37022 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,680 DEBUG Processing 208/896 atomic regions from SNP 62214 to 62814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,683 DEBUG Processing 150/474 atomic regions from SNP 44766 to 45366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,731 DEBUG Processing 7/647 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,751 DEBUG Processing 149/1020 atomic regions from SNP 44548 to 45149 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,756 DEBUG Processing 210/854 atomic regions from SNP 62909 to 63510 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,900 DEBUG Processing 151/474 atomic regions from SNP 45066 to 45666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,904 DEBUG Processing 209/896 atomic regions from SNP 62514 to 63114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,907 DEBUG Processing 123/1132 atomic regions from SNP 36722 to 37323 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,976 DEBUG Processing 211/854 atomic regions from SNP 63210 to 63811 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,976 DEBUG Processing 8/647 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,017 DEBUG Processing 150/1020 atomic regions from SNP 44849 to 45450 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,122 DEBUG Processing 152/474 atomic regions from SNP 45366 to 45966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:37,132 DEBUG Processing 210/896 atomic regions from SNP 62814 to 63414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,160 DEBUG Processing 124/1132 atomic regions from SNP 37023 to 37624 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,200 DEBUG Processing 212/854 atomic regions from SNP 63511 to 64112 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,226 DEBUG Processing 9/647 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,299 DEBUG Processing 151/1020 atomic regions from SNP 45150 to 45751 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,352 DEBUG Processing 153/474 atomic regions from SNP 45666 to 46266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:37,369 DEBUG Processing 211/896 atomic regions from SNP 63114 to 63714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,417 DEBUG Processing 125/1132 atomic regions from SNP 37324 to 37925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,422 DEBUG Processing 213/854 atomic regions from SNP 63812 to 64413 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,465 DEBUG Processing 10/647 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,570 DEBUG Processing 152/1020 atomic regions from SNP 45451 to 46052 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,574 DEBUG Processing 154/474 atomic regions from SNP 45966 to 46566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:37,599 DEBUG Processing 212/896 atomic regions from SNP 63414 to 64014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,646 DEBUG Processing 214/854 atomic regions from SNP 64113 to 64714 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,674 DEBUG Processing 126/1132 atomic regions from SNP 37625 to 38226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,689 DEBUG Processing 11/647 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,794 DEBUG Processing 155/474 atomic regions from SNP 46266 to 46866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:37,826 DEBUG Processing 213/896 atomic regions from SNP 63714 to 64314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,830 DEBUG Processing 153/1020 atomic regions from SNP 45752 to 46353 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,874 DEBUG Processing 215/854 atomic regions from SNP 64414 to 65015 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,918 DEBUG Processing 12/647 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,936 DEBUG Processing 127/1132 atomic regions from SNP 37926 to 38527 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,012 DEBUG Processing 156/474 atomic regions from SNP 46566 to 47166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:38,050 DEBUG Processing 214/896 atomic regions from SNP 64014 to 64614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,080 DEBUG Processing 154/1020 atomic regions from SNP 46053 to 46654 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,099 DEBUG Processing 216/854 atomic regions from SNP 64715 to 65316 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,146 DEBUG Processing 13/647 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,206 DEBUG Processing 128/1132 atomic regions from SNP 38227 to 38828 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,234 DEBUG Processing 157/474 atomic regions from SNP 46866 to 47466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:38,275 DEBUG Processing 215/896 atomic regions from SNP 64314 to 64914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,326 DEBUG Processing 217/854 atomic regions from SNP 65016 to 65617 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,331 DEBUG Processing 155/1020 atomic regions from SNP 46354 to 46955 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,394 DEBUG Processing 14/647 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,466 DEBUG Processing 158/474 atomic regions from SNP 47166 to 47766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:38,478 DEBUG Processing 129/1132 atomic regions from SNP 38528 to 39129 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,506 DEBUG Processing 216/896 atomic regions from SNP 64614 to 65214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,552 DEBUG Processing 218/854 atomic regions from SNP 65317 to 65918 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,590 DEBUG Processing 156/1020 atomic regions from SNP 46655 to 47256 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,690 DEBUG Processing 15/647 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,807 DEBUG Processing 159/474 atomic regions from SNP 47466 to 48066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:38,843 DEBUG Processing 130/1132 atomic regions from SNP 38829 to 39430 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,849 DEBUG Processing 217/896 atomic regions from SNP 64914 to 65514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,855 DEBUG Processing 219/854 atomic regions from SNP 65618 to 66219 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,933 DEBUG Processing 157/1020 atomic regions from SNP 46956 to 47557 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,015 DEBUG Processing 16/647 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,178 DEBUG Processing 160/474 atomic regions from SNP 47766 to 48366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:39,229 DEBUG Processing 220/854 atomic regions from SNP 65919 to 66520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,231 DEBUG Processing 131/1132 atomic regions from SNP 39130 to 39731 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,238 DEBUG Processing 218/896 atomic regions from SNP 65214 to 65814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,324 DEBUG Processing 158/1020 atomic regions from SNP 47257 to 47858 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,359 DEBUG Processing 17/647 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,554 DEBUG Processing 161/474 atomic regions from SNP 48066 to 48666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:39,608 DEBUG Processing 221/854 atomic regions from SNP 66220 to 66821 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,629 DEBUG Processing 219/896 atomic regions from SNP 65514 to 66114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,642 DEBUG Processing 132/1132 atomic regions from SNP 39431 to 40032 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,716 DEBUG Processing 159/1020 atomic regions from SNP 47558 to 48159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,718 DEBUG Processing 18/647 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,960 DEBUG Processing 162/474 atomic regions from SNP 48366 to 48966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:40,009 DEBUG Processing 222/854 atomic regions from SNP 66521 to 67122 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,064 DEBUG Processing 220/896 atomic regions from SNP 65814 to 66414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,086 DEBUG Processing 133/1132 atomic regions from SNP 39732 to 40333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,112 DEBUG Processing 19/647 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,160 DEBUG Processing 160/1020 atomic regions from SNP 47859 to 48460 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,350 DEBUG Processing 163/474 atomic regions from SNP 48666 to 49266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:40,382 DEBUG Processing 223/854 atomic regions from SNP 66822 to 67423 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,464 DEBUG Processing 221/896 atomic regions from SNP 66114 to 66714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,491 DEBUG Processing 134/1132 atomic regions from SNP 40033 to 40634 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,499 DEBUG Processing 20/647 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,594 DEBUG Processing 161/1020 atomic regions from SNP 48160 to 48761 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,739 DEBUG Processing 164/474 atomic regions from SNP 48966 to 49566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:40,753 DEBUG Processing 224/854 atomic regions from SNP 67123 to 67724 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,864 DEBUG Processing 222/896 atomic regions from SNP 66414 to 67014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,904 DEBUG Processing 21/647 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,920 DEBUG Processing 135/1132 atomic regions from SNP 40334 to 40935 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,002 DEBUG Processing 162/1020 atomic regions from SNP 48461 to 49062 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,017 DEBUG Processing 165/474 atomic regions from SNP 49266 to 49866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:41,026 DEBUG Processing 225/854 atomic regions from SNP 67424 to 68025 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,107 DEBUG Processing 223/896 atomic regions from SNP 66714 to 67314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,148 DEBUG Processing 22/647 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,191 DEBUG Processing 136/1132 atomic regions from SNP 40635 to 41236 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,309 DEBUG Processing 166/474 atomic regions from SNP 49566 to 50166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:41,324 DEBUG Processing 226/854 atomic regions from SNP 67725 to 68326 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,340 DEBUG Processing 163/1020 atomic regions from SNP 48762 to 49363 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,418 DEBUG Processing 224/896 atomic regions from SNP 67014 to 67614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,458 DEBUG Processing 23/647 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,504 DEBUG Processing 137/1132 atomic regions from SNP 40936 to 41537 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,641 DEBUG Processing 167/474 atomic regions from SNP 49866 to 50466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:41,656 DEBUG Processing 227/854 atomic regions from SNP 68026 to 68627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,700 DEBUG Processing 164/1020 atomic regions from SNP 49063 to 49664 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,776 DEBUG Processing 225/896 atomic regions from SNP 67314 to 67914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,814 DEBUG Processing 24/647 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,839 DEBUG Processing 138/1132 atomic regions from SNP 41237 to 41838 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,926 DEBUG Processing 168/474 atomic regions from SNP 50166 to 50766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:41,926 DEBUG Processing 228/854 atomic regions from SNP 68327 to 68928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,051 DEBUG Processing 165/1020 atomic regions from SNP 49364 to 49965 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,068 DEBUG Processing 226/896 atomic regions from SNP 67614 to 68214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,125 DEBUG Processing 25/647 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,190 DEBUG Processing 139/1132 atomic regions from SNP 41538 to 42139 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,250 DEBUG Processing 229/854 atomic regions from SNP 68628 to 69229 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,262 DEBUG Processing 169/474 atomic regions from SNP 50466 to 51066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:42,404 DEBUG Processing 227/896 atomic regions from SNP 67914 to 68514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,440 DEBUG Processing 166/1020 atomic regions from SNP 49665 to 50266 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,459 DEBUG Processing 26/647 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,557 DEBUG Processing 140/1132 atomic regions from SNP 41839 to 42440 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,626 DEBUG Processing 230/854 atomic regions from SNP 68929 to 69530 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,644 DEBUG Processing 170/474 atomic regions from SNP 50766 to 51366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:42,771 DEBUG Processing 228/896 atomic regions from SNP 68214 to 68814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,831 DEBUG Processing 27/647 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,841 DEBUG Processing 167/1020 atomic regions from SNP 49966 to 50567 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,936 DEBUG Processing 141/1132 atomic regions from SNP 42140 to 42741 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,015 DEBUG Processing 231/854 atomic regions from SNP 69230 to 69831 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,043 DEBUG Processing 171/474 atomic regions from SNP 51066 to 51666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:43,162 DEBUG Processing 229/896 atomic regions from SNP 68514 to 69114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,207 DEBUG Processing 28/647 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,259 DEBUG Processing 168/1020 atomic regions from SNP 50267 to 50868 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,327 DEBUG Processing 142/1132 atomic regions from SNP 42441 to 43042 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,406 DEBUG Processing 232/854 atomic regions from SNP 69531 to 70132 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,452 DEBUG Processing 172/474 atomic regions from SNP 51366 to 51966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:43,538 DEBUG Processing 230/896 atomic regions from SNP 68814 to 69414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,557 DEBUG Processing 29/647 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,611 DEBUG Processing 169/1020 atomic regions from SNP 50568 to 51169 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,652 DEBUG Processing 143/1132 atomic regions from SNP 42742 to 43343 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,755 DEBUG Processing 233/854 atomic regions from SNP 69832 to 70433 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,825 DEBUG Processing 173/474 atomic regions from SNP 51666 to 52266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:43,931 DEBUG Processing 30/647 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,940 DEBUG Processing 231/896 atomic regions from SNP 69114 to 69714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,993 DEBUG Processing 144/1132 atomic regions from SNP 43043 to 43644 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,994 DEBUG Processing 170/1020 atomic regions from SNP 50869 to 51470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,999 DEBUG Processing 234/854 atomic regions from SNP 70133 to 70734 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,049 DEBUG Processing 174/474 atomic regions from SNP 51966 to 52566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:44,207 DEBUG Processing 31/647 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,222 DEBUG Processing 232/896 atomic regions from SNP 69414 to 70014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,311 DEBUG Processing 235/854 atomic regions from SNP 70434 to 71035 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,328 DEBUG Processing 145/1132 atomic regions from SNP 43344 to 43945 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,339 DEBUG Processing 175/474 atomic regions from SNP 52266 to 52866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:44,355 DEBUG Processing 171/1020 atomic regions from SNP 51170 to 51771 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,489 DEBUG Processing 32/647 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,518 DEBUG Processing 233/896 atomic regions from SNP 69714 to 70314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,640 DEBUG Processing 176/474 atomic regions from SNP 52566 to 53166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:44,644 DEBUG Processing 236/854 atomic regions from SNP 70735 to 71336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,669 DEBUG Processing 146/1132 atomic regions from SNP 43645 to 44246 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,681 DEBUG Processing 172/1020 atomic regions from SNP 51471 to 52072 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,722 DEBUG Processing 33/647 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,738 DEBUG Processing 234/896 atomic regions from SNP 70014 to 70614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,885 DEBUG Processing 177/474 atomic regions from SNP 52866 to 53466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:44,903 DEBUG Processing 237/854 atomic regions from SNP 71036 to 71636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,976 DEBUG Processing 147/1132 atomic regions from SNP 43946 to 44547 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,007 DEBUG Processing 34/647 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,016 DEBUG Processing 173/1020 atomic regions from SNP 51772 to 52373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,025 DEBUG Processing 235/896 atomic regions from SNP 70314 to 70914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,170 DEBUG Processing 178/474 atomic regions from SNP 53166 to 53766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:45,186 DEBUG Processing 238/854 atomic regions from SNP 71336 to 71936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,298 DEBUG Processing 35/647 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,310 DEBUG Processing 148/1132 atomic regions from SNP 44247 to 44848 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,314 DEBUG Processing 236/896 atomic regions from SNP 70614 to 71214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,355 DEBUG Processing 174/1020 atomic regions from SNP 52073 to 52674 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,408 DEBUG Processing 179/474 atomic regions from SNP 53466 to 54066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:45,418 DEBUG Processing 239/854 atomic regions from SNP 71636 to 72236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,646 DEBUG Processing 36/647 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,686 DEBUG Processing 149/1132 atomic regions from SNP 44548 to 45149 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,692 DEBUG Processing 237/896 atomic regions from SNP 70914 to 71514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,761 DEBUG Processing 175/1020 atomic regions from SNP 52374 to 52975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,762 DEBUG Processing 240/854 atomic regions from SNP 71936 to 72536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,765 DEBUG Processing 180/474 atomic regions from SNP 53766 to 54366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:45,984 DEBUG Processing 37/647 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,079 DEBUG Processing 238/896 atomic regions from SNP 71214 to 71814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,085 DEBUG Processing 150/1132 atomic regions from SNP 44849 to 45450 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,162 DEBUG Processing 241/854 atomic regions from SNP 72236 to 72836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,184 DEBUG Processing 181/474 atomic regions from SNP 54066 to 54666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:46,206 DEBUG Processing 176/1020 atomic regions from SNP 52675 to 53276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,312 DEBUG Processing 38/647 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,424 DEBUG Processing 239/896 atomic regions from SNP 71514 to 72114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,449 DEBUG Processing 151/1132 atomic regions from SNP 45150 to 45751 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,491 DEBUG Processing 242/854 atomic regions from SNP 72536 to 73136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,521 DEBUG Processing 182/474 atomic regions from SNP 54366 to 54966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:46,591 DEBUG Processing 177/1020 atomic regions from SNP 52976 to 53577 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,606 DEBUG Processing 39/647 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,802 DEBUG Processing 240/896 atomic regions from SNP 71814 to 72414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,837 DEBUG Processing 152/1132 atomic regions from SNP 45451 to 46052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,852 DEBUG Processing 243/854 atomic regions from SNP 72836 to 73436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,901 DEBUG Processing 183/474 atomic regions from SNP 54666 to 55266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:46,927 DEBUG Processing 40/647 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,969 DEBUG Processing 178/1020 atomic regions from SNP 53277 to 53878 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,169 DEBUG Processing 241/896 atomic regions from SNP 72114 to 72714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,234 DEBUG Processing 244/854 atomic regions from SNP 73136 to 73736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,244 DEBUG Processing 153/1132 atomic regions from SNP 45752 to 46353 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,298 DEBUG Processing 184/474 atomic regions from SNP 54966 to 55566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:47,321 DEBUG Processing 41/647 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,396 DEBUG Processing 179/1020 atomic regions from SNP 53578 to 54179 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,497 DEBUG Processing 242/896 atomic regions from SNP 72414 to 73014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,564 DEBUG Processing 245/854 atomic regions from SNP 73436 to 74036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,603 DEBUG Processing 185/474 atomic regions from SNP 55266 to 55866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:47,616 DEBUG Processing 154/1132 atomic regions from SNP 46053 to 46654 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,618 DEBUG Processing 42/647 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,721 DEBUG Processing 180/1020 atomic regions from SNP 53879 to 54480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,799 DEBUG Processing 243/896 atomic regions from SNP 72714 to 73314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,872 DEBUG Processing 246/854 atomic regions from SNP 73736 to 74336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,962 DEBUG Processing 186/474 atomic regions from SNP 55566 to 56166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:47,967 DEBUG Processing 43/647 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,999 DEBUG Processing 155/1132 atomic regions from SNP 46354 to 46955 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,085 DEBUG Processing 181/1020 atomic regions from SNP 54180 to 54781 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,118 DEBUG Processing 244/896 atomic regions from SNP 73014 to 73614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,163 DEBUG Processing 247/854 atomic regions from SNP 74036 to 74636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,308 DEBUG Processing 187/474 atomic regions from SNP 55866 to 56466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:48,313 DEBUG Processing 44/647 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,376 DEBUG Processing 156/1132 atomic regions from SNP 46655 to 47256 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,461 DEBUG Processing 182/1020 atomic regions from SNP 54481 to 55082 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,484 DEBUG Processing 248/854 atomic regions from SNP 74336 to 74936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,491 DEBUG Processing 245/896 atomic regions from SNP 73314 to 73914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,617 DEBUG Processing 45/647 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,618 DEBUG Processing 188/474 atomic regions from SNP 56166 to 56766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:48,697 DEBUG Processing 157/1132 atomic regions from SNP 46956 to 47557 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,770 DEBUG Processing 249/854 atomic regions from SNP 74636 to 75236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,787 DEBUG Processing 183/1020 atomic regions from SNP 54782 to 55383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,815 DEBUG Processing 246/896 atomic regions from SNP 73614 to 74214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,898 DEBUG Processing 46/647 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,914 DEBUG Processing 189/474 atomic regions from SNP 56466 to 57066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:48,980 DEBUG Processing 158/1132 atomic regions from SNP 47257 to 47858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,000 DEBUG Processing 250/854 atomic regions from SNP 74936 to 75536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,052 DEBUG Processing 247/896 atomic regions from SNP 73914 to 74514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,064 DEBUG Processing 184/1020 atomic regions from SNP 55083 to 55684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,132 DEBUG Processing 47/647 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,162 DEBUG Processing 190/474 atomic regions from SNP 56766 to 57366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:49,238 DEBUG Processing 251/854 atomic regions from SNP 75236 to 75836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,251 DEBUG Processing 159/1132 atomic regions from SNP 47558 to 48159 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,275 DEBUG Processing 248/896 atomic regions from SNP 74214 to 74814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,327 DEBUG Processing 185/1020 atomic regions from SNP 55384 to 55985 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,350 DEBUG Processing 48/647 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,412 DEBUG Processing 191/474 atomic regions from SNP 57066 to 57666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:49,474 DEBUG Processing 252/854 atomic regions from SNP 75536 to 76136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,501 DEBUG Processing 249/896 atomic regions from SNP 74514 to 75114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,528 DEBUG Processing 160/1132 atomic regions from SNP 47859 to 48460 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,565 DEBUG Processing 49/647 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,572 DEBUG Processing 186/1020 atomic regions from SNP 55685 to 56286 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,630 DEBUG Processing 192/474 atomic regions from SNP 57366 to 57966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:49,697 DEBUG Processing 253/854 atomic regions from SNP 75836 to 76436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,735 DEBUG Processing 250/896 atomic regions from SNP 74814 to 75414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,790 DEBUG Processing 50/647 atomic regions from SNP 14749 to 15349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,795 DEBUG Processing 161/1132 atomic regions from SNP 48160 to 48761 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,821 DEBUG Processing 187/1020 atomic regions from SNP 55986 to 56587 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,859 DEBUG Processing 193/474 atomic regions from SNP 57666 to 58266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:49,915 DEBUG Processing 254/854 atomic regions from SNP 76136 to 76736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,966 DEBUG Processing 251/896 atomic regions from SNP 75114 to 75714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,017 DEBUG Processing 51/647 atomic regions from SNP 15049 to 15649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,057 DEBUG Processing 162/1132 atomic regions from SNP 48461 to 49062 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,075 DEBUG Processing 188/1020 atomic regions from SNP 56287 to 56888 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,087 DEBUG Processing 194/474 atomic regions from SNP 57966 to 58566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:50,130 DEBUG Processing 255/854 atomic regions from SNP 76436 to 77036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,190 DEBUG Processing 252/896 atomic regions from SNP 75414 to 76014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,239 DEBUG Processing 52/647 atomic regions from SNP 15349 to 15949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,305 DEBUG Processing 195/474 atomic regions from SNP 58266 to 58866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:50,316 DEBUG Processing 163/1132 atomic regions from SNP 48762 to 49363 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,336 DEBUG Processing 189/1020 atomic regions from SNP 56588 to 57189 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,347 DEBUG Processing 256/854 atomic regions from SNP 76736 to 77336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,409 DEBUG Processing 253/896 atomic regions from SNP 75714 to 76314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,458 DEBUG Processing 53/647 atomic regions from SNP 15649 to 16249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,526 DEBUG Processing 196/474 atomic regions from SNP 58566 to 59166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:50,572 DEBUG Processing 257/854 atomic regions from SNP 77036 to 77636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,579 DEBUG Processing 164/1132 atomic regions from SNP 49063 to 49664 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,611 DEBUG Processing 190/1020 atomic regions from SNP 56889 to 57490 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,628 DEBUG Processing 254/896 atomic regions from SNP 76014 to 76614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,671 DEBUG Processing 54/647 atomic regions from SNP 15949 to 16549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,748 DEBUG Processing 197/474 atomic regions from SNP 58866 to 59466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:50,801 DEBUG Processing 258/854 atomic regions from SNP 77336 to 77936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,843 DEBUG Processing 165/1132 atomic regions from SNP 49364 to 49965 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,852 DEBUG Processing 255/896 atomic regions from SNP 76314 to 76914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,887 DEBUG Processing 191/1020 atomic regions from SNP 57190 to 57791 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,889 DEBUG Processing 55/647 atomic regions from SNP 16249 to 16849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,963 DEBUG Processing 198/474 atomic regions from SNP 59166 to 59766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:51,029 DEBUG Processing 259/854 atomic regions from SNP 77636 to 78236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,077 DEBUG Processing 256/896 atomic regions from SNP 76614 to 77214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,104 DEBUG Processing 166/1132 atomic regions from SNP 49665 to 50266 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,110 DEBUG Processing 56/647 atomic regions from SNP 16549 to 17149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,138 DEBUG Processing 192/1020 atomic regions from SNP 57491 to 58092 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,174 DEBUG Processing 199/474 atomic regions from SNP 59466 to 60066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:51,285 DEBUG Processing 260/854 atomic regions from SNP 77936 to 78536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,320 DEBUG Processing 257/896 atomic regions from SNP 76914 to 77514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,364 DEBUG Processing 57/647 atomic regions from SNP 16849 to 17449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,393 DEBUG Processing 167/1132 atomic regions from SNP 49966 to 50567 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,417 DEBUG Processing 200/474 atomic regions from SNP 59766 to 60366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:51,445 DEBUG Processing 193/1020 atomic regions from SNP 57792 to 58393 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,555 DEBUG Processing 261/854 atomic regions from SNP 78236 to 78836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,593 DEBUG Processing 258/896 atomic regions from SNP 77214 to 77814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,663 DEBUG Processing 58/647 atomic regions from SNP 17149 to 17749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,704 DEBUG Processing 201/474 atomic regions from SNP 60066 to 60666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:51,720 DEBUG Processing 168/1132 atomic regions from SNP 50267 to 50868 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,781 DEBUG Processing 194/1020 atomic regions from SNP 58093 to 58694 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,830 DEBUG Processing 262/854 atomic regions from SNP 78536 to 79136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,868 DEBUG Processing 259/896 atomic regions from SNP 77514 to 78114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,902 DEBUG Processing 59/647 atomic regions from SNP 17449 to 18049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,938 DEBUG Processing 202/474 atomic regions from SNP 60366 to 60966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:51,981 DEBUG Processing 169/1132 atomic regions from SNP 50568 to 51169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,058 DEBUG Processing 263/854 atomic regions from SNP 78836 to 79436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,064 DEBUG Processing 195/1020 atomic regions from SNP 58394 to 58995 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,099 DEBUG Processing 260/896 atomic regions from SNP 77814 to 78414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,130 DEBUG Processing 60/647 atomic regions from SNP 17749 to 18349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,178 DEBUG Processing 203/474 atomic regions from SNP 60666 to 61266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:52,244 DEBUG Processing 170/1132 atomic regions from SNP 50869 to 51470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,285 DEBUG Processing 264/854 atomic regions from SNP 79136 to 79736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,318 DEBUG Processing 196/1020 atomic regions from SNP 58695 to 59296 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,322 DEBUG Processing 261/896 atomic regions from SNP 78114 to 78714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,348 DEBUG Processing 61/647 atomic regions from SNP 18049 to 18649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,419 DEBUG Processing 204/474 atomic regions from SNP 60966 to 61566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:52,504 DEBUG Processing 171/1132 atomic regions from SNP 51170 to 51771 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,513 DEBUG Processing 265/854 atomic regions from SNP 79436 to 80036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,549 DEBUG Processing 262/896 atomic regions from SNP 78414 to 79014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,566 DEBUG Processing 62/647 atomic regions from SNP 18349 to 18949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,568 DEBUG Processing 197/1020 atomic regions from SNP 58996 to 59597 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,658 DEBUG Processing 205/474 atomic regions from SNP 61266 to 61866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:52,737 DEBUG Processing 266/854 atomic regions from SNP 79736 to 80336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,763 DEBUG Processing 172/1132 atomic regions from SNP 51471 to 52072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,777 DEBUG Processing 263/896 atomic regions from SNP 78714 to 79314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,788 DEBUG Processing 63/647 atomic regions from SNP 18649 to 19249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,815 DEBUG Processing 198/1020 atomic regions from SNP 59297 to 59898 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,906 DEBUG Processing 206/474 atomic regions from SNP 61566 to 62166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:52,962 DEBUG Processing 267/854 atomic regions from SNP 80036 to 80636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,004 DEBUG Processing 264/896 atomic regions from SNP 79014 to 79614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,010 DEBUG Processing 64/647 atomic regions from SNP 18949 to 19549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,023 DEBUG Processing 173/1132 atomic regions from SNP 51772 to 52373 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,061 DEBUG Processing 199/1020 atomic regions from SNP 59598 to 60199 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,155 DEBUG Processing 207/474 atomic regions from SNP 61866 to 62466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:53,186 DEBUG Processing 268/854 atomic regions from SNP 80336 to 80936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,234 DEBUG Processing 265/896 atomic regions from SNP 79314 to 79914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,244 DEBUG Processing 65/647 atomic regions from SNP 19249 to 19849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,308 DEBUG Processing 174/1132 atomic regions from SNP 52073 to 52674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,311 DEBUG Processing 200/1020 atomic regions from SNP 59899 to 60500 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,401 DEBUG Processing 208/474 atomic regions from SNP 62166 to 62766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:53,408 DEBUG Processing 269/854 atomic regions from SNP 80636 to 81236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,462 DEBUG Processing 66/647 atomic regions from SNP 19549 to 20149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,463 DEBUG Processing 266/896 atomic regions from SNP 79614 to 80214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,559 DEBUG Processing 201/1020 atomic regions from SNP 60200 to 60801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,583 DEBUG Processing 175/1132 atomic regions from SNP 52374 to 52975 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,631 DEBUG Processing 270/854 atomic regions from SNP 80936 to 81536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,652 DEBUG Processing 209/474 atomic regions from SNP 62466 to 63066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:53,677 DEBUG Processing 67/647 atomic regions from SNP 19849 to 20449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,704 DEBUG Processing 267/896 atomic regions from SNP 79914 to 80514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,806 DEBUG Processing 202/1020 atomic regions from SNP 60501 to 61102 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,844 DEBUG Processing 176/1132 atomic regions from SNP 52675 to 53276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,860 DEBUG Processing 271/854 atomic regions from SNP 81236 to 81836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,880 DEBUG Processing 210/474 atomic regions from SNP 62766 to 63366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:53,896 DEBUG Processing 68/647 atomic regions from SNP 20149 to 20749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,959 DEBUG Processing 268/896 atomic regions from SNP 80214 to 80814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,052 DEBUG Processing 203/1020 atomic regions from SNP 60802 to 61403 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,089 DEBUG Processing 272/854 atomic regions from SNP 81536 to 82136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,098 DEBUG Processing 211/474 atomic regions from SNP 63066 to 63666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,103 DEBUG Processing 177/1132 atomic regions from SNP 52976 to 53577 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,124 DEBUG Processing 69/647 atomic regions from SNP 20449 to 21049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,214 DEBUG Processing 269/896 atomic regions from SNP 80514 to 81114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,296 DEBUG Processing 204/1020 atomic regions from SNP 61103 to 61704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,322 DEBUG Processing 273/854 atomic regions from SNP 81836 to 82436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,335 DEBUG Processing 212/474 atomic regions from SNP 63366 to 63966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,355 DEBUG Processing 70/647 atomic regions from SNP 20749 to 21349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,391 DEBUG Processing 178/1132 atomic regions from SNP 53277 to 53878 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,468 DEBUG Processing 270/896 atomic regions from SNP 80814 to 81414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,540 DEBUG Processing 205/1020 atomic regions from SNP 61404 to 62005 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,546 DEBUG Processing 274/854 atomic regions from SNP 82136 to 82736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,558 DEBUG Processing 213/474 atomic regions from SNP 63666 to 64266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,585 DEBUG Processing 71/647 atomic regions from SNP 21049 to 21649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,672 DEBUG Processing 179/1132 atomic regions from SNP 53578 to 54179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,715 DEBUG Processing 271/896 atomic regions from SNP 81114 to 81714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,762 DEBUG Processing 275/854 atomic regions from SNP 82436 to 83036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,773 DEBUG Processing 214/474 atomic regions from SNP 63966 to 64566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,786 DEBUG Processing 206/1020 atomic regions from SNP 61705 to 62306 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,808 DEBUG Processing 72/647 atomic regions from SNP 21349 to 21949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,941 DEBUG Processing 180/1132 atomic regions from SNP 53879 to 54480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,949 DEBUG Processing 272/896 atomic regions from SNP 81414 to 82014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,974 DEBUG Processing 276/854 atomic regions from SNP 82736 to 83336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,007 DEBUG Processing 215/474 atomic regions from SNP 64266 to 64866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,025 DEBUG Processing 73/647 atomic regions from SNP 21649 to 22249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,033 DEBUG Processing 207/1020 atomic regions from SNP 62006 to 62607 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,174 DEBUG Processing 273/896 atomic regions from SNP 81714 to 82314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,190 DEBUG Processing 277/854 atomic regions from SNP 83036 to 83636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,222 DEBUG Processing 181/1132 atomic regions from SNP 54180 to 54781 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,241 DEBUG Processing 74/647 atomic regions from SNP 21949 to 22549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,241 DEBUG Processing 216/474 atomic regions from SNP 64566 to 65166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,296 DEBUG Processing 208/1020 atomic regions from SNP 62307 to 62908 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,399 DEBUG Processing 274/896 atomic regions from SNP 82014 to 82614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,407 DEBUG Processing 278/854 atomic regions from SNP 83336 to 83936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,452 DEBUG Processing 217/474 atomic regions from SNP 64866 to 65466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,457 DEBUG Processing 75/647 atomic regions from SNP 22249 to 22849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,475 DEBUG Processing 182/1132 atomic regions from SNP 54481 to 55082 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,536 DEBUG Processing 209/1020 atomic regions from SNP 62608 to 63209 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,623 DEBUG Processing 279/854 atomic regions from SNP 83636 to 84236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,624 DEBUG Processing 275/896 atomic regions from SNP 82314 to 82914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,665 DEBUG Processing 218/474 atomic regions from SNP 65166 to 65766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,672 DEBUG Processing 76/647 atomic regions from SNP 22549 to 23149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,726 DEBUG Processing 183/1132 atomic regions from SNP 54782 to 55383 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,775 DEBUG Processing 210/1020 atomic regions from SNP 62909 to 63510 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,849 DEBUG Processing 280/854 atomic regions from SNP 83936 to 84536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,852 DEBUG Processing 276/896 atomic regions from SNP 82614 to 83214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,884 DEBUG Processing 219/474 atomic regions from SNP 65466 to 66066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,890 DEBUG Processing 77/647 atomic regions from SNP 22849 to 23449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,974 DEBUG Processing 184/1132 atomic regions from SNP 55083 to 55684 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,014 DEBUG Processing 211/1020 atomic regions from SNP 63210 to 63811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,068 DEBUG Processing 281/854 atomic regions from SNP 84236 to 84836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,080 DEBUG Processing 277/896 atomic regions from SNP 82914 to 83514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,105 DEBUG Processing 220/474 atomic regions from SNP 65766 to 66366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,110 DEBUG Processing 78/647 atomic regions from SNP 23149 to 23749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,229 DEBUG Processing 185/1132 atomic regions from SNP 55384 to 55985 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,267 DEBUG Processing 212/1020 atomic regions from SNP 63511 to 64112 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,289 DEBUG Processing 282/854 atomic regions from SNP 84536 to 85136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,308 DEBUG Processing 278/896 atomic regions from SNP 83214 to 83814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,329 DEBUG Processing 221/474 atomic regions from SNP 66066 to 66666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,329 DEBUG Processing 79/647 atomic regions from SNP 23449 to 24049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,487 DEBUG Processing 186/1132 atomic regions from SNP 55685 to 56286 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,516 DEBUG Processing 283/854 atomic regions from SNP 84836 to 85436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,540 DEBUG Processing 213/1020 atomic regions from SNP 63812 to 64413 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,543 DEBUG Processing 279/896 atomic regions from SNP 83514 to 84114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,553 DEBUG Processing 80/647 atomic regions from SNP 23749 to 24349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,557 DEBUG Processing 222/474 atomic regions from SNP 66366 to 66966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,739 DEBUG Processing 284/854 atomic regions from SNP 85136 to 85736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,745 DEBUG Processing 187/1132 atomic regions from SNP 55986 to 56587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,771 DEBUG Processing 280/896 atomic regions from SNP 83814 to 84414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,776 DEBUG Processing 81/647 atomic regions from SNP 24049 to 24649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,778 DEBUG Processing 223/474 atomic regions from SNP 66666 to 67266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,799 DEBUG Processing 214/1020 atomic regions from SNP 64113 to 64714 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,962 DEBUG Processing 285/854 atomic regions from SNP 85436 to 86036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,996 DEBUG Processing 82/647 atomic regions from SNP 24349 to 24949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,004 DEBUG Processing 281/896 atomic regions from SNP 84114 to 84714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,006 DEBUG Processing 224/474 atomic regions from SNP 66966 to 67566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,025 DEBUG Processing 188/1132 atomic regions from SNP 56287 to 56888 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,074 DEBUG Processing 215/1020 atomic regions from SNP 64414 to 65015 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,181 DEBUG Processing 286/854 atomic regions from SNP 85736 to 86336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,216 DEBUG Processing 83/647 atomic regions from SNP 24649 to 25249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,237 DEBUG Processing 282/896 atomic regions from SNP 84414 to 85014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,244 DEBUG Processing 225/474 atomic regions from SNP 67266 to 67866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,312 DEBUG Processing 189/1132 atomic regions from SNP 56588 to 57189 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,339 DEBUG Processing 216/1020 atomic regions from SNP 64715 to 65316 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,406 DEBUG Processing 287/854 atomic regions from SNP 86036 to 86636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,438 DEBUG Processing 84/647 atomic regions from SNP 24949 to 25549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,471 DEBUG Processing 226/474 atomic regions from SNP 67566 to 68166 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,472 DEBUG Processing 283/896 atomic regions from SNP 84714 to 85314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,590 DEBUG Processing 217/1020 atomic regions from SNP 65016 to 65617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,597 DEBUG Processing 190/1132 atomic regions from SNP 56889 to 57490 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,629 DEBUG Processing 288/854 atomic regions from SNP 86336 to 86936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,658 DEBUG Processing 85/647 atomic regions from SNP 25249 to 25849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,697 DEBUG Processing 227/474 atomic regions from SNP 67866 to 68466 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,704 DEBUG Processing 284/896 atomic regions from SNP 85014 to 85614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,839 DEBUG Processing 218/1020 atomic regions from SNP 65317 to 65918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,858 DEBUG Processing 289/854 atomic regions from SNP 86636 to 87236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,886 DEBUG Processing 86/647 atomic regions from SNP 25549 to 26149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,892 DEBUG Processing 191/1132 atomic regions from SNP 57190 to 57791 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,926 DEBUG Processing 228/474 atomic regions from SNP 68166 to 68766 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,940 DEBUG Processing 285/896 atomic regions from SNP 85314 to 85914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,087 DEBUG Processing 290/854 atomic regions from SNP 86936 to 87536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,091 DEBUG Processing 219/1020 atomic regions from SNP 65618 to 66219 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,115 DEBUG Processing 87/647 atomic regions from SNP 25849 to 26449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,160 DEBUG Processing 229/474 atomic regions from SNP 68466 to 69066 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,182 DEBUG Processing 286/896 atomic regions from SNP 85614 to 86214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,192 DEBUG Processing 192/1132 atomic regions from SNP 57491 to 58092 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,306 DEBUG Processing 291/854 atomic regions from SNP 87236 to 87836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,342 DEBUG Processing 88/647 atomic regions from SNP 26149 to 26749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,342 DEBUG Processing 220/1020 atomic regions from SNP 65919 to 66520 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,386 DEBUG Processing 230/474 atomic regions from SNP 68766 to 69366 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,419 DEBUG Processing 287/896 atomic regions from SNP 85914 to 86514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,475 DEBUG Processing 193/1132 atomic regions from SNP 57792 to 58393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,531 DEBUG Processing 292/854 atomic regions from SNP 87536 to 88136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,570 DEBUG Processing 89/647 atomic regions from SNP 26449 to 27049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,597 DEBUG Processing 221/1020 atomic regions from SNP 66220 to 66821 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,613 DEBUG Processing 231/474 atomic regions from SNP 69066 to 69666 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,655 DEBUG Processing 288/896 atomic regions from SNP 86214 to 86814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,748 DEBUG Processing 293/854 atomic regions from SNP 87836 to 88436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,758 DEBUG Processing 194/1132 atomic regions from SNP 58093 to 58694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,806 DEBUG Processing 90/647 atomic regions from SNP 26749 to 27349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,839 DEBUG Processing 232/474 atomic regions from SNP 69366 to 69966 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,851 DEBUG Processing 222/1020 atomic regions from SNP 66521 to 67122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,913 DEBUG Processing 289/896 atomic regions from SNP 86514 to 87114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,009 DEBUG Processing 294/854 atomic regions from SNP 88136 to 88736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,058 DEBUG Processing 195/1132 atomic regions from SNP 58394 to 58994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,106 DEBUG Processing 91/647 atomic regions from SNP 27049 to 27649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,116 DEBUG Processing 233/474 atomic regions from SNP 69666 to 70266 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,173 DEBUG Processing 223/1020 atomic regions from SNP 66822 to 67423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,226 DEBUG Processing 290/896 atomic regions from SNP 86814 to 87414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,288 DEBUG Processing 295/854 atomic regions from SNP 88436 to 89036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,362 DEBUG Processing 92/647 atomic regions from SNP 27349 to 27949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,379 DEBUG Processing 196/1132 atomic regions from SNP 58694 to 59294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,390 DEBUG Processing 234/474 atomic regions from SNP 69966 to 70566 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,500 DEBUG Processing 224/1020 atomic regions from SNP 67123 to 67724 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,566 DEBUG Processing 291/896 atomic regions from SNP 87114 to 87714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,623 DEBUG Processing 296/854 atomic regions from SNP 88736 to 89336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,674 DEBUG Processing 93/647 atomic regions from SNP 27649 to 28249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,704 DEBUG Processing 235/474 atomic regions from SNP 70266 to 70866 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,734 DEBUG Processing 197/1132 atomic regions from SNP 58994 to 59594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,789 DEBUG Processing 225/1020 atomic regions from SNP 67424 to 68025 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,847 DEBUG Processing 292/896 atomic regions from SNP 87414 to 88014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,938 DEBUG Processing 297/854 atomic regions from SNP 89036 to 89636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,981 DEBUG Processing 94/647 atomic regions from SNP 27949 to 28549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,019 DEBUG Processing 236/474 atomic regions from SNP 70566 to 71166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,082 DEBUG Processing 198/1132 atomic regions from SNP 59294 to 59894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,111 DEBUG Processing 226/1020 atomic regions from SNP 67725 to 68326 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,137 DEBUG Processing 293/896 atomic regions from SNP 87714 to 88314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,229 DEBUG Processing 298/854 atomic regions from SNP 89336 to 89936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,287 DEBUG Processing 95/647 atomic regions from SNP 28249 to 28849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,349 DEBUG Processing 237/474 atomic regions from SNP 70866 to 71466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,462 DEBUG Processing 227/1020 atomic regions from SNP 68026 to 68627 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,468 DEBUG Processing 294/896 atomic regions from SNP 88014 to 88614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,476 DEBUG Processing 199/1132 atomic regions from SNP 59594 to 60194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,517 DEBUG Processing 299/854 atomic regions from SNP 89636 to 90236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,561 DEBUG Processing 96/647 atomic regions from SNP 28549 to 29149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,669 DEBUG Processing 238/474 atomic regions from SNP 71166 to 71766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,840 DEBUG Processing 228/1020 atomic regions from SNP 68327 to 68928 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,844 DEBUG Processing 295/896 atomic regions from SNP 88314 to 88914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,849 DEBUG Processing 300/854 atomic regions from SNP 89936 to 90536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,881 DEBUG Processing 97/647 atomic regions from SNP 28849 to 29449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,881 DEBUG Processing 200/1132 atomic regions from SNP 59894 to 60494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,983 DEBUG Processing 239/474 atomic regions from SNP 71466 to 72066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,089 DEBUG Processing 296/896 atomic regions from SNP 88614 to 89214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,091 DEBUG Processing 301/854 atomic regions from SNP 90236 to 90836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,111 DEBUG Processing 229/1020 atomic regions from SNP 68628 to 69229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,143 DEBUG Processing 98/647 atomic regions from SNP 29149 to 29749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,162 DEBUG Processing 201/1132 atomic regions from SNP 60194 to 60794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,207 DEBUG Processing 240/474 atomic regions from SNP 71766 to 72366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,319 DEBUG Processing 297/896 atomic regions from SNP 88914 to 89514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,322 DEBUG Processing 302/854 atomic regions from SNP 90536 to 91136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,372 DEBUG Processing 230/1020 atomic regions from SNP 68929 to 69530 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,389 DEBUG Processing 99/647 atomic regions from SNP 29449 to 30049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,424 DEBUG Processing 202/1132 atomic regions from SNP 60494 to 61094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,428 DEBUG Processing 241/474 atomic regions from SNP 72066 to 72666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,543 DEBUG Processing 298/896 atomic regions from SNP 89214 to 89814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,548 DEBUG Processing 303/854 atomic regions from SNP 90836 to 91436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,627 DEBUG Processing 100/647 atomic regions from SNP 29749 to 30349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,627 DEBUG Processing 231/1020 atomic regions from SNP 69230 to 69831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,648 DEBUG Processing 242/474 atomic regions from SNP 72366 to 72966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,681 DEBUG Processing 203/1132 atomic regions from SNP 60794 to 61394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,766 DEBUG Processing 299/896 atomic regions from SNP 89514 to 90114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,768 DEBUG Processing 304/854 atomic regions from SNP 91136 to 91736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,864 DEBUG Processing 101/647 atomic regions from SNP 30049 to 30649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,869 DEBUG Processing 243/474 atomic regions from SNP 72666 to 73266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,881 DEBUG Processing 232/1020 atomic regions from SNP 69531 to 70132 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,943 DEBUG Processing 204/1132 atomic regions from SNP 61094 to 61694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,985 DEBUG Processing 305/854 atomic regions from SNP 91436 to 92036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,988 DEBUG Processing 300/896 atomic regions from SNP 89814 to 90414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,083 DEBUG Processing 244/474 atomic regions from SNP 72966 to 73566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:02,105 DEBUG Processing 102/647 atomic regions from SNP 30349 to 30949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,132 DEBUG Processing 233/1020 atomic regions from SNP 69832 to 70433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,210 DEBUG Processing 205/1132 atomic regions from SNP 61394 to 61994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,219 DEBUG Processing 306/854 atomic regions from SNP 91736 to 92336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,227 DEBUG Processing 301/896 atomic regions from SNP 90114 to 90714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,302 DEBUG Processing 245/474 atomic regions from SNP 73266 to 73866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:02,352 DEBUG Processing 103/647 atomic regions from SNP 30649 to 31249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,387 DEBUG Processing 234/1020 atomic regions from SNP 70133 to 70734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,484 DEBUG Processing 307/854 atomic regions from SNP 92036 to 92636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,499 DEBUG Processing 302/896 atomic regions from SNP 90414 to 91014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,518 DEBUG Processing 206/1132 atomic regions from SNP 61694 to 62294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,562 DEBUG Processing 246/474 atomic regions from SNP 73566 to 74166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:02,606 DEBUG Processing 104/647 atomic regions from SNP 30949 to 31549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,675 DEBUG Processing 235/1020 atomic regions from SNP 70434 to 71035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,777 DEBUG Processing 308/854 atomic regions from SNP 92336 to 92936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,807 DEBUG Processing 303/896 atomic regions from SNP 90714 to 91314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,835 DEBUG Processing 207/1132 atomic regions from SNP 61994 to 62594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,872 DEBUG Processing 247/474 atomic regions from SNP 73866 to 74466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:02,882 DEBUG Processing 105/647 atomic regions from SNP 31249 to 31849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,983 DEBUG Processing 236/1020 atomic regions from SNP 70735 to 71336 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,017 DEBUG Processing 309/854 atomic regions from SNP 92636 to 93236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,039 DEBUG Processing 304/896 atomic regions from SNP 91014 to 91614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,095 DEBUG Processing 208/1132 atomic regions from SNP 62294 to 62894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,100 DEBUG Processing 248/474 atomic regions from SNP 74166 to 74766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,104 DEBUG Processing 106/647 atomic regions from SNP 31549 to 32149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,243 DEBUG Processing 237/1020 atomic regions from SNP 71036 to 71637 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,252 DEBUG Processing 310/854 atomic regions from SNP 92936 to 93536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,265 DEBUG Processing 305/896 atomic regions from SNP 91314 to 91914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,318 DEBUG Processing 249/474 atomic regions from SNP 74466 to 75066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,325 DEBUG Processing 107/647 atomic regions from SNP 31849 to 32449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,376 DEBUG Processing 209/1132 atomic regions from SNP 62594 to 63194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,481 DEBUG Processing 311/854 atomic regions from SNP 93236 to 93836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,493 DEBUG Processing 306/896 atomic regions from SNP 91614 to 92214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,496 DEBUG Processing 238/1020 atomic regions from SNP 71337 to 71938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,535 DEBUG Processing 250/474 atomic regions from SNP 74766 to 75366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,560 DEBUG Processing 108/647 atomic regions from SNP 32149 to 32749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,652 DEBUG Processing 210/1132 atomic regions from SNP 62894 to 63494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,704 DEBUG Processing 312/854 atomic regions from SNP 93536 to 94136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,719 DEBUG Processing 307/896 atomic regions from SNP 91914 to 92514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,749 DEBUG Processing 239/1020 atomic regions from SNP 71638 to 72238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,750 DEBUG Processing 251/474 atomic regions from SNP 75066 to 75666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,803 DEBUG Processing 109/647 atomic regions from SNP 32449 to 33049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,911 DEBUG Processing 211/1132 atomic regions from SNP 63194 to 63794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,925 DEBUG Processing 313/854 atomic regions from SNP 93836 to 94436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,944 DEBUG Processing 308/896 atomic regions from SNP 92214 to 92814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,970 DEBUG Processing 252/474 atomic regions from SNP 75366 to 75966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,999 DEBUG Processing 240/1020 atomic regions from SNP 71938 to 72538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,028 DEBUG Processing 110/647 atomic regions from SNP 32749 to 33349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,151 DEBUG Processing 314/854 atomic regions from SNP 94136 to 94736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,168 DEBUG Processing 212/1132 atomic regions from SNP 63494 to 64094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,172 DEBUG Processing 309/896 atomic regions from SNP 92514 to 93114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,193 DEBUG Processing 253/474 atomic regions from SNP 75666 to 76266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:04,253 DEBUG Processing 241/1020 atomic regions from SNP 72238 to 72838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,256 DEBUG Processing 111/647 atomic regions from SNP 33049 to 33649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,369 DEBUG Processing 315/854 atomic regions from SNP 94436 to 95036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,396 DEBUG Processing 310/896 atomic regions from SNP 92814 to 93414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,411 DEBUG Processing 254/474 atomic regions from SNP 75966 to 76566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:04,420 DEBUG Processing 213/1132 atomic regions from SNP 63794 to 64394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,483 DEBUG Processing 112/647 atomic regions from SNP 33349 to 33949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,504 DEBUG Processing 242/1020 atomic regions from SNP 72538 to 73138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,588 DEBUG Processing 316/854 atomic regions from SNP 94736 to 95336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,621 DEBUG Processing 311/896 atomic regions from SNP 93114 to 93714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,626 DEBUG Processing 255/474 atomic regions from SNP 76266 to 76866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:04,672 DEBUG Processing 214/1132 atomic regions from SNP 64094 to 64694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,707 DEBUG Processing 113/647 atomic regions from SNP 33649 to 34249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,754 DEBUG Processing 243/1020 atomic regions from SNP 72838 to 73438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,810 DEBUG Processing 317/854 atomic regions from SNP 95036 to 95636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,843 DEBUG Processing 256/474 atomic regions from SNP 76566 to 77166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:04,845 DEBUG Processing 312/896 atomic regions from SNP 93414 to 94014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,924 DEBUG Processing 215/1132 atomic regions from SNP 64394 to 64994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,930 DEBUG Processing 114/647 atomic regions from SNP 33949 to 34549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,006 DEBUG Processing 244/1020 atomic regions from SNP 73138 to 73738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,033 DEBUG Processing 318/854 atomic regions from SNP 95336 to 95936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,066 DEBUG Processing 257/474 atomic regions from SNP 76866 to 77466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,074 DEBUG Processing 313/896 atomic regions from SNP 93714 to 94314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,147 DEBUG Processing 115/647 atomic regions from SNP 34249 to 34849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,177 DEBUG Processing 216/1132 atomic regions from SNP 64694 to 65294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,256 DEBUG Processing 245/1020 atomic regions from SNP 73438 to 74038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,257 DEBUG Processing 319/854 atomic regions from SNP 95636 to 96236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,292 DEBUG Processing 258/474 atomic regions from SNP 77166 to 77766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,305 DEBUG Processing 314/896 atomic regions from SNP 94014 to 94614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,364 DEBUG Processing 116/647 atomic regions from SNP 34549 to 35149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,430 DEBUG Processing 217/1132 atomic regions from SNP 64994 to 65594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,480 DEBUG Processing 320/854 atomic regions from SNP 95936 to 96536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,500 DEBUG Processing 246/1020 atomic regions from SNP 73738 to 74338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,517 DEBUG Processing 259/474 atomic regions from SNP 77466 to 78066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,536 DEBUG Processing 315/896 atomic regions from SNP 94314 to 94914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,581 DEBUG Processing 117/647 atomic regions from SNP 34849 to 35449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,682 DEBUG Processing 218/1132 atomic regions from SNP 65294 to 65894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,699 DEBUG Processing 321/854 atomic regions from SNP 96236 to 96836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,737 DEBUG Processing 260/474 atomic regions from SNP 77766 to 78366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,743 DEBUG Processing 247/1020 atomic regions from SNP 74038 to 74638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,764 DEBUG Processing 316/896 atomic regions from SNP 94614 to 95214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,801 DEBUG Processing 118/647 atomic regions from SNP 35149 to 35749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,920 DEBUG Processing 322/854 atomic regions from SNP 96536 to 97136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,937 DEBUG Processing 219/1132 atomic regions from SNP 65594 to 66194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,958 DEBUG Processing 261/474 atomic regions from SNP 78066 to 78666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,988 DEBUG Processing 248/1020 atomic regions from SNP 74338 to 74938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,992 DEBUG Processing 317/896 atomic regions from SNP 94914 to 95514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,024 DEBUG Processing 119/647 atomic regions from SNP 35449 to 36049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,139 DEBUG Processing 323/854 atomic regions from SNP 96836 to 97436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,177 DEBUG Processing 262/474 atomic regions from SNP 78366 to 78966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:06,192 DEBUG Processing 220/1132 atomic regions from SNP 65894 to 66494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,218 DEBUG Processing 318/896 atomic regions from SNP 95214 to 95814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,235 DEBUG Processing 249/1020 atomic regions from SNP 74638 to 75238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,242 DEBUG Processing 120/647 atomic regions from SNP 35749 to 36349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,357 DEBUG Processing 324/854 atomic regions from SNP 97136 to 97736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,397 DEBUG Processing 263/474 atomic regions from SNP 78666 to 79266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:06,444 DEBUG Processing 319/896 atomic regions from SNP 95514 to 96114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,447 DEBUG Processing 221/1132 atomic regions from SNP 66194 to 66794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,465 DEBUG Processing 121/647 atomic regions from SNP 36049 to 36649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,500 DEBUG Processing 250/1020 atomic regions from SNP 74938 to 75538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,583 DEBUG Processing 325/854 atomic regions from SNP 97436 to 98036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,621 DEBUG Processing 264/474 atomic regions from SNP 78966 to 79566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:06,679 DEBUG Processing 320/896 atomic regions from SNP 95814 to 96414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,695 DEBUG Processing 122/647 atomic regions from SNP 36349 to 36949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,714 DEBUG Processing 222/1132 atomic regions from SNP 66494 to 67094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,767 DEBUG Processing 251/1020 atomic regions from SNP 75238 to 75838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,812 DEBUG Processing 326/854 atomic regions from SNP 97736 to 98336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,845 DEBUG Processing 265/474 atomic regions from SNP 79266 to 79866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:06,908 DEBUG Processing 321/896 atomic regions from SNP 96114 to 96714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,909 DEBUG Processing 123/647 atomic regions from SNP 36649 to 37249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,961 DEBUG Processing 223/1132 atomic regions from SNP 66794 to 67394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,007 DEBUG Processing 252/1020 atomic regions from SNP 75538 to 76138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,029 DEBUG Processing 327/854 atomic regions from SNP 98036 to 98636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,063 DEBUG Processing 266/474 atomic regions from SNP 79566 to 80166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:07,125 DEBUG Processing 124/647 atomic regions from SNP 36949 to 37549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,137 DEBUG Processing 322/896 atomic regions from SNP 96414 to 97014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,215 DEBUG Processing 224/1132 atomic regions from SNP 67094 to 67694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,250 DEBUG Processing 253/1020 atomic regions from SNP 75838 to 76438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,251 DEBUG Processing 328/854 atomic regions from SNP 98336 to 98936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,280 DEBUG Processing 267/474 atomic regions from SNP 79866 to 80466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:07,340 DEBUG Processing 125/647 atomic regions from SNP 37249 to 37849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,365 DEBUG Processing 323/896 atomic regions from SNP 96714 to 97314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,467 DEBUG Processing 225/1132 atomic regions from SNP 67394 to 67994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,472 DEBUG Processing 329/854 atomic regions from SNP 98636 to 99236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,495 DEBUG Processing 254/1020 atomic regions from SNP 76138 to 76738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,497 DEBUG Processing 268/474 atomic regions from SNP 80166 to 80766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:07,562 DEBUG Processing 126/647 atomic regions from SNP 37549 to 38149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,593 DEBUG Processing 324/896 atomic regions from SNP 97014 to 97614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,710 DEBUG Processing 330/854 atomic regions from SNP 98936 to 99536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,723 DEBUG Processing 269/474 atomic regions from SNP 80466 to 81066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:07,732 DEBUG Processing 226/1132 atomic regions from SNP 67694 to 68294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,754 DEBUG Processing 255/1020 atomic regions from SNP 76438 to 77038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,790 DEBUG Processing 127/647 atomic regions from SNP 37849 to 38449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,819 DEBUG Processing 325/896 atomic regions from SNP 97314 to 97914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,938 DEBUG Processing 331/854 atomic regions from SNP 99236 to 99836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,946 DEBUG Processing 270/474 atomic regions from SNP 80766 to 81366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:07,990 DEBUG Processing 227/1132 atomic regions from SNP 67994 to 68594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,002 DEBUG Processing 256/1020 atomic regions from SNP 76738 to 77338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,009 DEBUG Processing 128/647 atomic regions from SNP 38149 to 38749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,041 DEBUG Processing 326/896 atomic regions from SNP 97614 to 98214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,168 DEBUG Processing 332/854 atomic regions from SNP 99536 to 100136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,180 DEBUG Processing 271/474 atomic regions from SNP 81066 to 81666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,240 DEBUG Processing 129/647 atomic regions from SNP 38449 to 39049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,253 DEBUG Processing 228/1132 atomic regions from SNP 68294 to 68894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,255 DEBUG Processing 257/1020 atomic regions from SNP 77038 to 77638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,294 DEBUG Processing 327/896 atomic regions from SNP 97914 to 98514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,387 DEBUG Processing 333/854 atomic regions from SNP 99836 to 100436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,397 DEBUG Processing 272/474 atomic regions from SNP 81366 to 81966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,465 DEBUG Processing 130/647 atomic regions from SNP 38749 to 39349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,506 DEBUG Processing 258/1020 atomic regions from SNP 77338 to 77938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,513 DEBUG Processing 229/1132 atomic regions from SNP 68594 to 69194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,546 DEBUG Processing 328/896 atomic regions from SNP 98214 to 98814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,606 DEBUG Processing 334/854 atomic regions from SNP 100136 to 100736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,609 DEBUG Processing 273/474 atomic regions from SNP 81666 to 82266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,685 DEBUG Processing 131/647 atomic regions from SNP 39049 to 39649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,754 DEBUG Processing 259/1020 atomic regions from SNP 77638 to 78238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,771 DEBUG Processing 230/1132 atomic regions from SNP 68894 to 69494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,781 DEBUG Processing 329/896 atomic regions from SNP 98514 to 99114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,824 DEBUG Processing 274/474 atomic regions from SNP 81966 to 82566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,826 DEBUG Processing 335/854 atomic regions from SNP 100436 to 101036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,898 DEBUG Processing 132/647 atomic regions from SNP 39349 to 39949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,997 DEBUG Processing 260/1020 atomic regions from SNP 77938 to 78538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,011 DEBUG Processing 330/896 atomic regions from SNP 98814 to 99414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,031 DEBUG Processing 231/1132 atomic regions from SNP 69194 to 69794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,051 DEBUG Processing 336/854 atomic regions from SNP 100736 to 101336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,051 DEBUG Processing 275/474 atomic regions from SNP 82266 to 82866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:09,112 DEBUG Processing 133/647 atomic regions from SNP 39649 to 40249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,240 DEBUG Processing 331/896 atomic regions from SNP 99114 to 99714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,240 DEBUG Processing 261/1020 atomic regions from SNP 78238 to 78838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,277 DEBUG Processing 337/854 atomic regions from SNP 101036 to 101636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,280 DEBUG Processing 276/474 atomic regions from SNP 82566 to 83166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:09,289 DEBUG Processing 232/1132 atomic regions from SNP 69494 to 70094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,335 DEBUG Processing 134/647 atomic regions from SNP 39949 to 40549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,458 DEBUG Processing 332/896 atomic regions from SNP 99414 to 100014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,481 DEBUG Processing 262/1020 atomic regions from SNP 78538 to 79138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,501 DEBUG Processing 338/854 atomic regions from SNP 101336 to 101936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,503 DEBUG Processing 277/474 atomic regions from SNP 82866 to 83466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:09,551 DEBUG Processing 233/1132 atomic regions from SNP 69794 to 70394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,563 DEBUG Processing 135/647 atomic regions from SNP 40249 to 40849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,675 DEBUG Processing 333/896 atomic regions from SNP 99714 to 100314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,719 DEBUG Processing 278/474 atomic regions from SNP 83166 to 83766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:09,721 DEBUG Processing 263/1020 atomic regions from SNP 78838 to 79438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,723 DEBUG Processing 339/854 atomic regions from SNP 101636 to 102236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,788 DEBUG Processing 136/647 atomic regions from SNP 40549 to 41149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,810 DEBUG Processing 234/1132 atomic regions from SNP 70094 to 70694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,899 DEBUG Processing 334/896 atomic regions from SNP 100014 to 100614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,934 DEBUG Processing 279/474 atomic regions from SNP 83466 to 84066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:09,944 DEBUG Processing 340/854 atomic regions from SNP 101936 to 102536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,967 DEBUG Processing 264/1020 atomic regions from SNP 79138 to 79738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,007 DEBUG Processing 137/647 atomic regions from SNP 40849 to 41449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,066 DEBUG Processing 235/1132 atomic regions from SNP 70394 to 70994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,127 DEBUG Processing 335/896 atomic regions from SNP 100314 to 100914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,156 DEBUG Processing 280/474 atomic regions from SNP 83766 to 84366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:10,168 DEBUG Processing 341/854 atomic regions from SNP 102236 to 102836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,213 DEBUG Processing 265/1020 atomic regions from SNP 79438 to 80038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,231 DEBUG Processing 138/647 atomic regions from SNP 41149 to 41749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,319 DEBUG Processing 236/1132 atomic regions from SNP 70694 to 71294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,354 DEBUG Processing 336/896 atomic regions from SNP 100614 to 101214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,383 DEBUG Processing 281/474 atomic regions from SNP 84066 to 84666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:10,390 DEBUG Processing 342/854 atomic regions from SNP 102536 to 103136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,453 DEBUG Processing 139/647 atomic regions from SNP 41449 to 42049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,462 DEBUG Processing 266/1020 atomic regions from SNP 79738 to 80338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,566 DEBUG Processing 237/1132 atomic regions from SNP 70994 to 71594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,575 DEBUG Processing 337/896 atomic regions from SNP 100914 to 101514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,601 DEBUG Processing 282/474 atomic regions from SNP 84366 to 84966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:10,607 DEBUG Processing 343/854 atomic regions from SNP 102836 to 103436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,675 DEBUG Processing 140/647 atomic regions from SNP 41749 to 42349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,712 DEBUG Processing 267/1020 atomic regions from SNP 80038 to 80638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,799 DEBUG Processing 338/896 atomic regions from SNP 101214 to 101814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,821 DEBUG Processing 283/474 atomic regions from SNP 84666 to 85266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:10,829 DEBUG Processing 344/854 atomic regions from SNP 103136 to 103736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,841 DEBUG Processing 238/1132 atomic regions from SNP 71294 to 71894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,901 DEBUG Processing 141/647 atomic regions from SNP 42049 to 42649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,958 DEBUG Processing 268/1020 atomic regions from SNP 80338 to 80938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,022 DEBUG Processing 339/896 atomic regions from SNP 101514 to 102114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,038 DEBUG Processing 284/474 atomic regions from SNP 84966 to 85566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,049 DEBUG Processing 345/854 atomic regions from SNP 103436 to 104036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,111 DEBUG Processing 239/1132 atomic regions from SNP 71594 to 72194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,125 DEBUG Processing 142/647 atomic regions from SNP 42349 to 42949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,201 DEBUG Processing 269/1020 atomic regions from SNP 80638 to 81238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,248 DEBUG Processing 340/896 atomic regions from SNP 101814 to 102414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,260 DEBUG Processing 285/474 atomic regions from SNP 85266 to 85866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,271 DEBUG Processing 346/854 atomic regions from SNP 103736 to 104336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,348 DEBUG Processing 143/647 atomic regions from SNP 42649 to 43249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,369 DEBUG Processing 240/1132 atomic regions from SNP 71894 to 72494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,446 DEBUG Processing 270/1020 atomic regions from SNP 80938 to 81538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,473 DEBUG Processing 341/896 atomic regions from SNP 102114 to 102714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,479 DEBUG Processing 286/474 atomic regions from SNP 85566 to 86166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,497 DEBUG Processing 347/854 atomic regions from SNP 104036 to 104636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,570 DEBUG Processing 144/647 atomic regions from SNP 42949 to 43549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,627 DEBUG Processing 241/1132 atomic regions from SNP 72194 to 72794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,688 DEBUG Processing 271/1020 atomic regions from SNP 81238 to 81838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,693 DEBUG Processing 342/896 atomic regions from SNP 102414 to 103014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,695 DEBUG Processing 287/474 atomic regions from SNP 85866 to 86466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,714 DEBUG Processing 348/854 atomic regions from SNP 104336 to 104936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,792 DEBUG Processing 145/647 atomic regions from SNP 43249 to 43849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,885 DEBUG Processing 242/1132 atomic regions from SNP 72494 to 73094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,911 DEBUG Processing 288/474 atomic regions from SNP 86166 to 86766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,916 DEBUG Processing 343/896 atomic regions from SNP 102714 to 103314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,930 DEBUG Processing 272/1020 atomic regions from SNP 81538 to 82138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,932 DEBUG Processing 349/854 atomic regions from SNP 104636 to 105236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,008 DEBUG Processing 146/647 atomic regions from SNP 43549 to 44149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,133 DEBUG Processing 289/474 atomic regions from SNP 86466 to 87066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,145 DEBUG Processing 344/896 atomic regions from SNP 103014 to 103614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,150 DEBUG Processing 243/1132 atomic regions from SNP 72794 to 73394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,159 DEBUG Processing 350/854 atomic regions from SNP 104936 to 105536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,183 DEBUG Processing 273/1020 atomic regions from SNP 81838 to 82438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,232 DEBUG Processing 147/647 atomic regions from SNP 43849 to 44449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,359 DEBUG Processing 290/474 atomic regions from SNP 86766 to 87366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,377 DEBUG Processing 345/896 atomic regions from SNP 103314 to 103914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,386 DEBUG Processing 351/854 atomic regions from SNP 105236 to 105836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,409 DEBUG Processing 244/1132 atomic regions from SNP 73094 to 73694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,427 DEBUG Processing 274/1020 atomic regions from SNP 82138 to 82738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,446 DEBUG Processing 148/647 atomic regions from SNP 44149 to 44749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,578 DEBUG Processing 291/474 atomic regions from SNP 87066 to 87666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,606 DEBUG Processing 346/896 atomic regions from SNP 103614 to 104214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,625 DEBUG Processing 352/854 atomic regions from SNP 105536 to 106136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,665 DEBUG Processing 245/1132 atomic regions from SNP 73394 to 73994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,665 DEBUG Processing 149/647 atomic regions from SNP 44449 to 45049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,670 DEBUG Processing 275/1020 atomic regions from SNP 82438 to 83038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,791 DEBUG Processing 292/474 atomic regions from SNP 87366 to 87966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,833 DEBUG Processing 347/896 atomic regions from SNP 103914 to 104514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,861 DEBUG Processing 353/854 atomic regions from SNP 105836 to 106436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,886 DEBUG Processing 150/647 atomic regions from SNP 44749 to 45349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,916 DEBUG Processing 276/1020 atomic regions from SNP 82738 to 83338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,920 DEBUG Processing 246/1132 atomic regions from SNP 73694 to 74294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,003 DEBUG Processing 293/474 atomic regions from SNP 87666 to 88266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,052 DEBUG Processing 348/896 atomic regions from SNP 104214 to 104814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,101 DEBUG Processing 354/854 atomic regions from SNP 106136 to 106736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,106 DEBUG Processing 151/647 atomic regions from SNP 45049 to 45649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,161 DEBUG Processing 277/1020 atomic regions from SNP 83038 to 83638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,175 DEBUG Processing 247/1132 atomic regions from SNP 73994 to 74594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,216 DEBUG Processing 294/474 atomic regions from SNP 87966 to 88566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,274 DEBUG Processing 349/896 atomic regions from SNP 104514 to 105114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,327 DEBUG Processing 355/854 atomic regions from SNP 106436 to 107036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,329 DEBUG Processing 152/647 atomic regions from SNP 45349 to 45949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,407 DEBUG Processing 278/1020 atomic regions from SNP 83338 to 83938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,438 DEBUG Processing 295/474 atomic regions from SNP 88266 to 88866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,445 DEBUG Processing 248/1132 atomic regions from SNP 74294 to 74894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,498 DEBUG Processing 350/896 atomic regions from SNP 104814 to 105414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,548 DEBUG Processing 356/854 atomic regions from SNP 106736 to 107336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,549 DEBUG Processing 153/647 atomic regions from SNP 45649 to 46249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,653 DEBUG Processing 279/1020 atomic regions from SNP 83638 to 84238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,660 DEBUG Processing 296/474 atomic regions from SNP 88566 to 89166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,702 DEBUG Processing 249/1132 atomic regions from SNP 74594 to 75194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,728 DEBUG Processing 351/896 atomic regions from SNP 105114 to 105714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,768 DEBUG Processing 357/854 atomic regions from SNP 107036 to 107636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,771 DEBUG Processing 154/647 atomic regions from SNP 45949 to 46549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,876 DEBUG Processing 297/474 atomic regions from SNP 88866 to 89466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,898 DEBUG Processing 280/1020 atomic regions from SNP 83938 to 84538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,959 DEBUG Processing 250/1132 atomic regions from SNP 74894 to 75494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,964 DEBUG Processing 352/896 atomic regions from SNP 105414 to 106014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,990 DEBUG Processing 358/854 atomic regions from SNP 107336 to 107936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,992 DEBUG Processing 155/647 atomic regions from SNP 46249 to 46849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,086 DEBUG Processing 298/474 atomic regions from SNP 89166 to 89766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,140 DEBUG Processing 281/1020 atomic regions from SNP 84238 to 84838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,217 DEBUG Processing 359/854 atomic regions from SNP 107636 to 108236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,219 DEBUG Processing 251/1132 atomic regions from SNP 75194 to 75794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,222 DEBUG Processing 353/896 atomic regions from SNP 105714 to 106314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,222 DEBUG Processing 156/647 atomic regions from SNP 46549 to 47149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,307 DEBUG Processing 299/474 atomic regions from SNP 89466 to 90066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,387 DEBUG Processing 282/1020 atomic regions from SNP 84538 to 85138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,473 DEBUG Processing 360/854 atomic regions from SNP 107936 to 108536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,477 DEBUG Processing 157/647 atomic regions from SNP 46849 to 47449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,485 DEBUG Processing 354/896 atomic regions from SNP 106014 to 106614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,509 DEBUG Processing 252/1132 atomic regions from SNP 75494 to 76094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,584 DEBUG Processing 300/474 atomic regions from SNP 89766 to 90366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,673 DEBUG Processing 283/1020 atomic regions from SNP 84838 to 85438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,743 DEBUG Processing 361/854 atomic regions from SNP 108236 to 108836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,748 DEBUG Processing 158/647 atomic regions from SNP 47149 to 47749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,777 DEBUG Processing 355/896 atomic regions from SNP 106314 to 106914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,810 DEBUG Processing 253/1132 atomic regions from SNP 75794 to 76394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,878 DEBUG Processing 301/474 atomic regions from SNP 90066 to 90666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,936 DEBUG Processing 284/1020 atomic regions from SNP 85138 to 85738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,963 DEBUG Processing 362/854 atomic regions from SNP 108536 to 109136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,969 DEBUG Processing 159/647 atomic regions from SNP 47449 to 48049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,000 DEBUG Processing 356/896 atomic regions from SNP 106614 to 107214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,059 DEBUG Processing 254/1132 atomic regions from SNP 76094 to 76694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,117 DEBUG Processing 302/474 atomic regions from SNP 90366 to 90966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,180 DEBUG Processing 285/1020 atomic regions from SNP 85438 to 86038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,181 DEBUG Processing 363/854 atomic regions from SNP 108836 to 109436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,186 DEBUG Processing 160/647 atomic regions from SNP 47749 to 48349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,216 DEBUG Processing 357/896 atomic regions from SNP 106914 to 107514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,306 DEBUG Processing 255/1132 atomic regions from SNP 76394 to 76994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,354 DEBUG Processing 303/474 atomic regions from SNP 90666 to 91266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,409 DEBUG Processing 364/854 atomic regions from SNP 109136 to 109736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,411 DEBUG Processing 161/647 atomic regions from SNP 48049 to 48649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,427 DEBUG Processing 286/1020 atomic regions from SNP 85738 to 86338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,439 DEBUG Processing 358/896 atomic regions from SNP 107214 to 107814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,555 DEBUG Processing 256/1132 atomic regions from SNP 76694 to 77294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,592 DEBUG Processing 304/474 atomic regions from SNP 90966 to 91566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,630 DEBUG Processing 162/647 atomic regions from SNP 48349 to 48949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,632 DEBUG Processing 365/854 atomic regions from SNP 109436 to 110036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,664 DEBUG Processing 359/896 atomic regions from SNP 107514 to 108114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,676 DEBUG Processing 287/1020 atomic regions from SNP 86038 to 86638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,801 DEBUG Processing 257/1132 atomic regions from SNP 76994 to 77594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,805 DEBUG Processing 305/474 atomic regions from SNP 91266 to 91866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,851 DEBUG Processing 163/647 atomic regions from SNP 48649 to 49249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,855 DEBUG Processing 366/854 atomic regions from SNP 109736 to 110336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,890 DEBUG Processing 360/896 atomic regions from SNP 107814 to 108414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,927 DEBUG Processing 288/1020 atomic regions from SNP 86338 to 86938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,018 DEBUG Processing 306/474 atomic regions from SNP 91566 to 92166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,055 DEBUG Processing 258/1132 atomic regions from SNP 77294 to 77894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,071 DEBUG Processing 164/647 atomic regions from SNP 48949 to 49549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,086 DEBUG Processing 367/854 atomic regions from SNP 110036 to 110636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,116 DEBUG Processing 361/896 atomic regions from SNP 108114 to 108714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,178 DEBUG Processing 289/1020 atomic regions from SNP 86638 to 87238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,234 DEBUG Processing 307/474 atomic regions from SNP 91866 to 92466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,294 DEBUG Processing 165/647 atomic regions from SNP 49249 to 49849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,310 DEBUG Processing 368/854 atomic regions from SNP 110336 to 110936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,312 DEBUG Processing 259/1132 atomic regions from SNP 77594 to 78194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,366 DEBUG Processing 362/896 atomic regions from SNP 108414 to 109014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,453 DEBUG Processing 290/1020 atomic regions from SNP 86938 to 87538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,476 DEBUG Processing 308/474 atomic regions from SNP 92166 to 92766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,534 DEBUG Processing 166/647 atomic regions from SNP 49549 to 50149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,566 DEBUG Processing 369/854 atomic regions from SNP 110636 to 111236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,595 DEBUG Processing 260/1132 atomic regions from SNP 77894 to 78494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,608 DEBUG Processing 363/896 atomic regions from SNP 108714 to 109314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,696 DEBUG Processing 309/474 atomic regions from SNP 92466 to 93066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,700 DEBUG Processing 291/1020 atomic regions from SNP 87238 to 87838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,756 DEBUG Processing 167/647 atomic regions from SNP 49849 to 50449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,790 DEBUG Processing 370/854 atomic regions from SNP 110936 to 111536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,831 DEBUG Processing 364/896 atomic regions from SNP 109014 to 109614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,856 DEBUG Processing 261/1132 atomic regions from SNP 78194 to 78794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,941 DEBUG Processing 310/474 atomic regions from SNP 92766 to 93366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,972 DEBUG Processing 292/1020 atomic regions from SNP 87538 to 88138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,987 DEBUG Processing 168/647 atomic regions from SNP 50149 to 50749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,019 DEBUG Processing 371/854 atomic regions from SNP 111236 to 111836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,054 DEBUG Processing 365/896 atomic regions from SNP 109314 to 109914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,113 DEBUG Processing 262/1132 atomic regions from SNP 78494 to 79094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,156 DEBUG Processing 311/474 atomic regions from SNP 93066 to 93666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,213 DEBUG Processing 169/647 atomic regions from SNP 50449 to 51049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,221 DEBUG Processing 293/1020 atomic regions from SNP 87838 to 88438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,244 DEBUG Processing 372/854 atomic regions from SNP 111536 to 112136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,278 DEBUG Processing 366/896 atomic regions from SNP 109614 to 110214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,362 DEBUG Processing 263/1132 atomic regions from SNP 78794 to 79394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,368 DEBUG Processing 312/474 atomic regions from SNP 93366 to 93966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,432 DEBUG Processing 170/647 atomic regions from SNP 50749 to 51349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,464 DEBUG Processing 373/854 atomic regions from SNP 111836 to 112436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,465 DEBUG Processing 294/1020 atomic regions from SNP 88138 to 88738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,502 DEBUG Processing 367/896 atomic regions from SNP 109914 to 110514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,576 DEBUG Processing 313/474 atomic regions from SNP 93666 to 94266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,609 DEBUG Processing 264/1132 atomic regions from SNP 79094 to 79694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,648 DEBUG Processing 171/647 atomic regions from SNP 51049 to 51649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,681 DEBUG Processing 374/854 atomic regions from SNP 112136 to 112736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,707 DEBUG Processing 295/1020 atomic regions from SNP 88438 to 89038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,732 DEBUG Processing 368/896 atomic regions from SNP 110214 to 110814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,799 DEBUG Processing 314/474 atomic regions from SNP 93966 to 94566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,861 DEBUG Processing 265/1132 atomic regions from SNP 79394 to 79994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,867 DEBUG Processing 172/647 atomic regions from SNP 51349 to 51949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,900 DEBUG Processing 375/854 atomic regions from SNP 112436 to 113036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,950 DEBUG Processing 296/1020 atomic regions from SNP 88738 to 89338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,959 DEBUG Processing 369/896 atomic regions from SNP 110514 to 111114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,029 DEBUG Processing 315/474 atomic regions from SNP 94266 to 94866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,085 DEBUG Processing 173/647 atomic regions from SNP 51649 to 52249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,113 DEBUG Processing 266/1132 atomic regions from SNP 79694 to 80294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,118 DEBUG Processing 376/854 atomic regions from SNP 112736 to 113336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,188 DEBUG Processing 297/1020 atomic regions from SNP 89038 to 89638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,191 DEBUG Processing 370/896 atomic regions from SNP 110814 to 111414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,270 DEBUG Processing 316/474 atomic regions from SNP 94566 to 95166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,305 DEBUG Processing 174/647 atomic regions from SNP 51949 to 52549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,340 DEBUG Processing 377/854 atomic regions from SNP 113036 to 113636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,370 DEBUG Processing 267/1132 atomic regions from SNP 79994 to 80594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,428 DEBUG Processing 298/1020 atomic regions from SNP 89338 to 89938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,439 DEBUG Processing 371/896 atomic regions from SNP 111114 to 111714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,492 DEBUG Processing 317/474 atomic regions from SNP 94866 to 95466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,524 DEBUG Processing 175/647 atomic regions from SNP 52249 to 52849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,561 DEBUG Processing 378/854 atomic regions from SNP 113336 to 113936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,621 DEBUG Processing 268/1132 atomic regions from SNP 80294 to 80894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,665 DEBUG Processing 299/1020 atomic regions from SNP 89638 to 90238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,671 DEBUG Processing 372/896 atomic regions from SNP 111414 to 112014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,711 DEBUG Processing 318/474 atomic regions from SNP 95166 to 95766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,739 DEBUG Processing 176/647 atomic regions from SNP 52549 to 53149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,779 DEBUG Processing 379/854 atomic regions from SNP 113636 to 114236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,875 DEBUG Processing 269/1132 atomic regions from SNP 80594 to 81194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,906 DEBUG Processing 300/1020 atomic regions from SNP 89938 to 90538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,919 DEBUG Processing 373/896 atomic regions from SNP 111714 to 112314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,926 DEBUG Processing 319/474 atomic regions from SNP 95466 to 96066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,955 DEBUG Processing 177/647 atomic regions from SNP 52849 to 53449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,996 DEBUG Processing 380/854 atomic regions from SNP 113936 to 114536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,128 DEBUG Processing 270/1132 atomic regions from SNP 80894 to 81494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,143 DEBUG Processing 374/896 atomic regions from SNP 112014 to 112614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,143 DEBUG Processing 320/474 atomic regions from SNP 95766 to 96366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,151 DEBUG Processing 301/1020 atomic regions from SNP 90238 to 90838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,171 DEBUG Processing 178/647 atomic regions from SNP 53149 to 53749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,213 DEBUG Processing 381/854 atomic regions from SNP 114236 to 114836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,365 DEBUG Processing 321/474 atomic regions from SNP 96066 to 96666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,372 DEBUG Processing 375/896 atomic regions from SNP 112314 to 112914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,386 DEBUG Processing 271/1132 atomic regions from SNP 81194 to 81794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,393 DEBUG Processing 179/647 atomic regions from SNP 53449 to 54049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,399 DEBUG Processing 302/1020 atomic regions from SNP 90538 to 91138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,428 DEBUG Processing 382/854 atomic regions from SNP 114536 to 115136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,585 DEBUG Processing 322/474 atomic regions from SNP 96366 to 96966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,600 DEBUG Processing 376/896 atomic regions from SNP 112614 to 113214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,620 DEBUG Processing 180/647 atomic regions from SNP 53749 to 54349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,645 DEBUG Processing 272/1132 atomic regions from SNP 81494 to 82094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,650 DEBUG Processing 303/1020 atomic regions from SNP 90838 to 91438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,651 DEBUG Processing 383/854 atomic regions from SNP 114836 to 115436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,799 DEBUG Processing 323/474 atomic regions from SNP 96666 to 97266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,824 DEBUG Processing 377/896 atomic regions from SNP 112914 to 113514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,848 DEBUG Processing 181/647 atomic regions from SNP 54049 to 54649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,880 DEBUG Processing 384/854 atomic regions from SNP 115136 to 115736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,905 DEBUG Processing 304/1020 atomic regions from SNP 91138 to 91738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,908 DEBUG Processing 273/1132 atomic regions from SNP 81794 to 82394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,009 DEBUG Processing 324/474 atomic regions from SNP 96966 to 97566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,042 DEBUG Processing 378/896 atomic regions from SNP 113214 to 113814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,073 DEBUG Processing 182/647 atomic regions from SNP 54349 to 54949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,114 DEBUG Processing 385/854 atomic regions from SNP 115436 to 116036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,163 DEBUG Processing 305/1020 atomic regions from SNP 91438 to 92038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,178 DEBUG Processing 274/1132 atomic regions from SNP 82094 to 82694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,219 DEBUG Processing 325/474 atomic regions from SNP 97266 to 97866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,259 DEBUG Processing 379/896 atomic regions from SNP 113514 to 114114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,296 DEBUG Processing 183/647 atomic regions from SNP 54649 to 55249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,350 DEBUG Processing 386/854 atomic regions from SNP 115736 to 116336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,421 DEBUG Processing 306/1020 atomic regions from SNP 91738 to 92338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,441 DEBUG Processing 326/474 atomic regions from SNP 97566 to 98166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,443 DEBUG Processing 275/1132 atomic regions from SNP 82394 to 82994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,479 DEBUG Processing 380/896 atomic regions from SNP 113814 to 114414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,512 DEBUG Processing 184/647 atomic regions from SNP 54949 to 55549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,576 DEBUG Processing 387/854 atomic regions from SNP 116036 to 116636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,664 DEBUG Processing 327/474 atomic regions from SNP 97866 to 98466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,674 DEBUG Processing 307/1020 atomic regions from SNP 92038 to 92638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,703 DEBUG Processing 276/1132 atomic regions from SNP 82694 to 83294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,704 DEBUG Processing 381/896 atomic regions from SNP 114114 to 114714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,731 DEBUG Processing 185/647 atomic regions from SNP 55249 to 55849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,794 DEBUG Processing 388/854 atomic regions from SNP 116336 to 116936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,890 DEBUG Processing 328/474 atomic regions from SNP 98166 to 98766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,923 DEBUG Processing 308/1020 atomic regions from SNP 92338 to 92938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,935 DEBUG Processing 382/896 atomic regions from SNP 114414 to 115014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,955 DEBUG Processing 186/647 atomic regions from SNP 55549 to 56149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,965 DEBUG Processing 277/1132 atomic regions from SNP 82994 to 83594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,014 DEBUG Processing 389/854 atomic regions from SNP 116636 to 117236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,109 DEBUG Processing 329/474 atomic regions from SNP 98466 to 99066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,162 DEBUG Processing 383/896 atomic regions from SNP 114714 to 115314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,170 DEBUG Processing 309/1020 atomic regions from SNP 92638 to 93238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,173 DEBUG Processing 187/647 atomic regions from SNP 55849 to 56449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,220 DEBUG Processing 278/1132 atomic regions from SNP 83294 to 83894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,232 DEBUG Processing 390/854 atomic regions from SNP 116936 to 117536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,330 DEBUG Processing 330/474 atomic regions from SNP 98766 to 99366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,395 DEBUG Processing 384/896 atomic regions from SNP 115014 to 115614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,399 DEBUG Processing 188/647 atomic regions from SNP 56149 to 56749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,421 DEBUG Processing 310/1020 atomic regions from SNP 92938 to 93538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,457 DEBUG Processing 391/854 atomic regions from SNP 117236 to 117836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,476 DEBUG Processing 279/1132 atomic regions from SNP 83594 to 84194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,547 DEBUG Processing 331/474 atomic regions from SNP 99066 to 99666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,623 DEBUG Processing 385/896 atomic regions from SNP 115314 to 115914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,625 DEBUG Processing 189/647 atomic regions from SNP 56449 to 57049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,670 DEBUG Processing 311/1020 atomic regions from SNP 93238 to 93838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,684 DEBUG Processing 392/854 atomic regions from SNP 117536 to 118136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,732 DEBUG Processing 280/1132 atomic regions from SNP 83894 to 84494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,762 DEBUG Processing 332/474 atomic regions from SNP 99366 to 99966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,846 DEBUG Processing 190/647 atomic regions from SNP 56749 to 57349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,852 DEBUG Processing 386/896 atomic regions from SNP 115614 to 116214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,910 DEBUG Processing 393/854 atomic regions from SNP 117836 to 118436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,920 DEBUG Processing 312/1020 atomic regions from SNP 93538 to 94138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,982 DEBUG Processing 333/474 atomic regions from SNP 99666 to 100266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,989 DEBUG Processing 281/1132 atomic regions from SNP 84194 to 84794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,064 DEBUG Processing 191/647 atomic regions from SNP 57049 to 57649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,077 DEBUG Processing 387/896 atomic regions from SNP 115914 to 116514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,135 DEBUG Processing 394/854 atomic regions from SNP 118136 to 118736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,170 DEBUG Processing 313/1020 atomic regions from SNP 93838 to 94438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,202 DEBUG Processing 334/474 atomic regions from SNP 99966 to 100566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,243 DEBUG Processing 282/1132 atomic regions from SNP 84494 to 85094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,279 DEBUG Processing 192/647 atomic regions from SNP 57349 to 57949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,300 DEBUG Processing 388/896 atomic regions from SNP 116214 to 116814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,357 DEBUG Processing 395/854 atomic regions from SNP 118436 to 119036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,414 DEBUG Processing 314/1020 atomic regions from SNP 94138 to 94738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,423 DEBUG Processing 335/474 atomic regions from SNP 100266 to 100866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,500 DEBUG Processing 193/647 atomic regions from SNP 57649 to 58249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,516 DEBUG Processing 283/1132 atomic regions from SNP 84794 to 85394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,523 DEBUG Processing 389/896 atomic regions from SNP 116514 to 117114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,576 DEBUG Processing 396/854 atomic regions from SNP 118736 to 119336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,642 DEBUG Processing 336/474 atomic regions from SNP 100566 to 101166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,659 DEBUG Processing 315/1020 atomic regions from SNP 94438 to 95038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,727 DEBUG Processing 194/647 atomic regions from SNP 57949 to 58549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,752 DEBUG Processing 390/896 atomic regions from SNP 116814 to 117414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,803 DEBUG Processing 284/1132 atomic regions from SNP 85094 to 85694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,814 DEBUG Processing 397/854 atomic regions from SNP 119036 to 119636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,859 DEBUG Processing 337/474 atomic regions from SNP 100866 to 101466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,903 DEBUG Processing 316/1020 atomic regions from SNP 94738 to 95338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,949 DEBUG Processing 195/647 atomic regions from SNP 58249 to 58849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,978 DEBUG Processing 391/896 atomic regions from SNP 117114 to 117714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,050 DEBUG Processing 398/854 atomic regions from SNP 119336 to 119936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,069 DEBUG Processing 285/1132 atomic regions from SNP 85394 to 85994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,077 DEBUG Processing 338/474 atomic regions from SNP 101166 to 101766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,153 DEBUG Processing 317/1020 atomic regions from SNP 95038 to 95638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,176 DEBUG Processing 196/647 atomic regions from SNP 58549 to 59149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,201 DEBUG Processing 392/896 atomic regions from SNP 117414 to 118014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,271 DEBUG Processing 399/854 atomic regions from SNP 119636 to 120236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,299 DEBUG Processing 339/474 atomic regions from SNP 101466 to 102066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,340 DEBUG Processing 286/1132 atomic regions from SNP 85694 to 86294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,400 DEBUG Processing 318/1020 atomic regions from SNP 95338 to 95938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,401 DEBUG Processing 197/647 atomic regions from SNP 58849 to 59449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,422 DEBUG Processing 393/896 atomic regions from SNP 117714 to 118314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,488 DEBUG Processing 400/854 atomic regions from SNP 119936 to 120536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,522 DEBUG Processing 340/474 atomic regions from SNP 101766 to 102366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,620 DEBUG Processing 287/1132 atomic regions from SNP 85994 to 86594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,626 DEBUG Processing 198/647 atomic regions from SNP 59149 to 59749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,646 DEBUG Processing 394/896 atomic regions from SNP 118014 to 118614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,653 DEBUG Processing 319/1020 atomic regions from SNP 95638 to 96238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,710 DEBUG Processing 401/854 atomic regions from SNP 120236 to 120836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,742 DEBUG Processing 341/474 atomic regions from SNP 102066 to 102666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,851 DEBUG Processing 199/647 atomic regions from SNP 59449 to 60049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,872 DEBUG Processing 395/896 atomic regions from SNP 118314 to 118914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,882 DEBUG Processing 288/1132 atomic regions from SNP 86294 to 86894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,924 DEBUG Processing 320/1020 atomic regions from SNP 95938 to 96538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,955 DEBUG Processing 402/854 atomic regions from SNP 120536 to 121136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,962 DEBUG Processing 342/474 atomic regions from SNP 102366 to 102966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,072 DEBUG Processing 200/647 atomic regions from SNP 59749 to 60349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,100 DEBUG Processing 396/896 atomic regions from SNP 118614 to 119214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,145 DEBUG Processing 289/1132 atomic regions from SNP 86594 to 87194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,179 DEBUG Processing 321/1020 atomic regions from SNP 96238 to 96838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,184 DEBUG Processing 343/474 atomic regions from SNP 102666 to 103266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,203 DEBUG Processing 403/854 atomic regions from SNP 120836 to 121436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,294 DEBUG Processing 201/647 atomic regions from SNP 60049 to 60649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,328 DEBUG Processing 397/896 atomic regions from SNP 118914 to 119514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,405 DEBUG Processing 344/474 atomic regions from SNP 102966 to 103566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,410 DEBUG Processing 290/1132 atomic regions from SNP 86894 to 87494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,433 DEBUG Processing 404/854 atomic regions from SNP 121136 to 121736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,434 DEBUG Processing 322/1020 atomic regions from SNP 96538 to 97138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,522 DEBUG Processing 202/647 atomic regions from SNP 60349 to 60949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,557 DEBUG Processing 398/896 atomic regions from SNP 119214 to 119814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,631 DEBUG Processing 345/474 atomic regions from SNP 103266 to 103866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,666 DEBUG Processing 405/854 atomic regions from SNP 121436 to 122036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,673 DEBUG Processing 291/1132 atomic regions from SNP 87194 to 87794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,689 DEBUG Processing 323/1020 atomic regions from SNP 96838 to 97438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,754 DEBUG Processing 203/647 atomic regions from SNP 60649 to 61249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,785 DEBUG Processing 399/896 atomic regions from SNP 119514 to 120114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,846 DEBUG Processing 346/474 atomic regions from SNP 103566 to 104166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,897 DEBUG Processing 406/854 atomic regions from SNP 121736 to 122336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,939 DEBUG Processing 292/1132 atomic regions from SNP 87494 to 88094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,946 DEBUG Processing 324/1020 atomic regions from SNP 97138 to 97738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,002 DEBUG Processing 204/647 atomic regions from SNP 60949 to 61549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,040 DEBUG Processing 400/896 atomic regions from SNP 119814 to 120414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,097 DEBUG Processing 347/474 atomic regions from SNP 103866 to 104466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,129 DEBUG Processing 407/854 atomic regions from SNP 122036 to 122636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,213 DEBUG Processing 293/1132 atomic regions from SNP 87794 to 88394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,219 DEBUG Processing 325/1020 atomic regions from SNP 97438 to 98038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,250 DEBUG Processing 205/647 atomic regions from SNP 61249 to 61849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,318 DEBUG Processing 401/896 atomic regions from SNP 120114 to 120714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,378 DEBUG Processing 348/474 atomic regions from SNP 104166 to 104766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,399 DEBUG Processing 408/854 atomic regions from SNP 122336 to 122936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,517 DEBUG Processing 294/1132 atomic regions from SNP 88094 to 88694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,522 DEBUG Processing 206/647 atomic regions from SNP 61549 to 62149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,523 DEBUG Processing 326/1020 atomic regions from SNP 97738 to 98338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,609 DEBUG Processing 402/896 atomic regions from SNP 120414 to 121014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,666 DEBUG Processing 349/474 atomic regions from SNP 104466 to 105066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,680 DEBUG Processing 409/854 atomic regions from SNP 122636 to 123236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,832 DEBUG Processing 207/647 atomic regions from SNP 61849 to 62449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,852 DEBUG Processing 327/1020 atomic regions from SNP 98038 to 98638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,863 DEBUG Processing 295/1132 atomic regions from SNP 88394 to 88994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,943 DEBUG Processing 403/896 atomic regions from SNP 120714 to 121314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,954 DEBUG Processing 350/474 atomic regions from SNP 104766 to 105366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,974 DEBUG Processing 410/854 atomic regions from SNP 122936 to 123536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,095 DEBUG Processing 208/647 atomic regions from SNP 62149 to 62749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,129 DEBUG Processing 328/1020 atomic regions from SNP 98338 to 98938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,147 DEBUG Processing 296/1132 atomic regions from SNP 88694 to 89294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,184 DEBUG Processing 351/474 atomic regions from SNP 105066 to 105666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,188 DEBUG Processing 404/896 atomic regions from SNP 121014 to 121614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,204 DEBUG Processing 411/854 atomic regions from SNP 123236 to 123836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,322 DEBUG Processing 209/647 atomic regions from SNP 62449 to 63049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,389 DEBUG Processing 329/1020 atomic regions from SNP 98638 to 99238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,424 DEBUG Processing 297/1132 atomic regions from SNP 88994 to 89594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,424 DEBUG Processing 352/474 atomic regions from SNP 105366 to 105966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,431 DEBUG Processing 405/896 atomic regions from SNP 121314 to 121914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,438 DEBUG Processing 412/854 atomic regions from SNP 123536 to 124136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,538 DEBUG Processing 210/647 atomic regions from SNP 62749 to 63349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,646 DEBUG Processing 330/1020 atomic regions from SNP 98938 to 99538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,661 DEBUG Processing 353/474 atomic regions from SNP 105666 to 106266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,670 DEBUG Processing 406/896 atomic regions from SNP 121614 to 122214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,675 DEBUG Processing 413/854 atomic regions from SNP 123836 to 124436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,694 DEBUG Processing 298/1132 atomic regions from SNP 89294 to 89894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,754 DEBUG Processing 211/647 atomic regions from SNP 63049 to 63649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,896 DEBUG Processing 354/474 atomic regions from SNP 105966 to 106566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,902 DEBUG Processing 331/1020 atomic regions from SNP 99238 to 99838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,912 DEBUG Processing 407/896 atomic regions from SNP 121914 to 122514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,919 DEBUG Processing 414/854 atomic regions from SNP 124136 to 124736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,969 DEBUG Processing 299/1132 atomic regions from SNP 89594 to 90194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,983 DEBUG Processing 212/647 atomic regions from SNP 63349 to 63949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,163 DEBUG Processing 355/474 atomic regions from SNP 106266 to 106866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,178 DEBUG Processing 408/896 atomic regions from SNP 122214 to 122814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,179 DEBUG Processing 415/854 atomic regions from SNP 124436 to 125036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,179 DEBUG Processing 332/1020 atomic regions from SNP 99538 to 100138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,241 DEBUG Processing 213/647 atomic regions from SNP 63649 to 64249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,271 DEBUG Processing 300/1132 atomic regions from SNP 89894 to 90494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,489 DEBUG Processing 409/896 atomic regions from SNP 122514 to 123114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,493 DEBUG Processing 356/474 atomic regions from SNP 106566 to 107166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,500 DEBUG Processing 416/854 atomic regions from SNP 124736 to 125336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,516 DEBUG Processing 333/1020 atomic regions from SNP 99838 to 100438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,566 DEBUG Processing 214/647 atomic regions from SNP 63949 to 64549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,631 DEBUG Processing 301/1132 atomic regions from SNP 90194 to 90794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,717 DEBUG Processing 410/896 atomic regions from SNP 122814 to 123414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,729 DEBUG Processing 417/854 atomic regions from SNP 125036 to 125636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,732 DEBUG Processing 357/474 atomic regions from SNP 106866 to 107466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,775 DEBUG Processing 334/1020 atomic regions from SNP 100138 to 100738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,813 DEBUG Processing 215/647 atomic regions from SNP 64249 to 64849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,912 DEBUG Processing 302/1132 atomic regions from SNP 90494 to 91094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,942 DEBUG Processing 411/896 atomic regions from SNP 123114 to 123714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,957 DEBUG Processing 358/474 atomic regions from SNP 107166 to 107766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,958 DEBUG Processing 418/854 atomic regions from SNP 125336 to 125936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,028 DEBUG Processing 335/1020 atomic regions from SNP 100438 to 101038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,042 DEBUG Processing 216/647 atomic regions from SNP 64549 to 65149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,174 DEBUG Processing 303/1132 atomic regions from SNP 90794 to 91394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,182 DEBUG Processing 412/896 atomic regions from SNP 123414 to 124014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,187 DEBUG Processing 419/854 atomic regions from SNP 125636 to 126236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,189 DEBUG Processing 359/474 atomic regions from SNP 107466 to 108066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,272 DEBUG Processing 217/647 atomic regions from SNP 64849 to 65449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,283 DEBUG Processing 336/1020 atomic regions from SNP 100738 to 101338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,432 DEBUG Processing 413/896 atomic regions from SNP 123714 to 124314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,440 DEBUG Processing 420/854 atomic regions from SNP 125936 to 126536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,440 DEBUG Processing 360/474 atomic regions from SNP 107766 to 108366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,446 DEBUG Processing 304/1132 atomic regions from SNP 91094 to 91694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,506 DEBUG Processing 218/647 atomic regions from SNP 65149 to 65749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,545 DEBUG Processing 337/1020 atomic regions from SNP 101038 to 101638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,669 DEBUG Processing 414/896 atomic regions from SNP 124014 to 124614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,689 DEBUG Processing 421/854 atomic regions from SNP 126236 to 126836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,697 DEBUG Processing 361/474 atomic regions from SNP 108066 to 108666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,710 DEBUG Processing 305/1132 atomic regions from SNP 91394 to 91994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,742 DEBUG Processing 219/647 atomic regions from SNP 65449 to 66049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,804 DEBUG Processing 338/1020 atomic regions from SNP 101338 to 101938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,904 DEBUG Processing 415/896 atomic regions from SNP 124314 to 124914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,932 DEBUG Processing 422/854 atomic regions from SNP 126536 to 127136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,942 DEBUG Processing 362/474 atomic regions from SNP 108366 to 108966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,976 DEBUG Processing 306/1132 atomic regions from SNP 91694 to 92294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,978 DEBUG Processing 220/647 atomic regions from SNP 65749 to 66349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,054 DEBUG Processing 339/1020 atomic regions from SNP 101638 to 102238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,130 DEBUG Processing 416/896 atomic regions from SNP 124614 to 125214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,158 DEBUG Processing 423/854 atomic regions from SNP 126836 to 127436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,168 DEBUG Processing 363/474 atomic regions from SNP 108666 to 109266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,206 DEBUG Processing 221/647 atomic regions from SNP 66049 to 66649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,239 DEBUG Processing 307/1132 atomic regions from SNP 91994 to 92594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,298 DEBUG Processing 340/1020 atomic regions from SNP 101938 to 102538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,363 DEBUG Processing 417/896 atomic regions from SNP 124914 to 125514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,381 DEBUG Processing 424/854 atomic regions from SNP 127136 to 127736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,400 DEBUG Processing 364/474 atomic regions from SNP 108966 to 109566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,431 DEBUG Processing 222/647 atomic regions from SNP 66349 to 66949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,498 DEBUG Processing 308/1132 atomic regions from SNP 92294 to 92894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,542 DEBUG Processing 341/1020 atomic regions from SNP 102238 to 102838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,595 DEBUG Processing 418/896 atomic regions from SNP 125214 to 125814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,603 DEBUG Processing 425/854 atomic regions from SNP 127436 to 128036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,633 DEBUG Processing 365/474 atomic regions from SNP 109266 to 109866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,654 DEBUG Processing 223/647 atomic regions from SNP 66649 to 67249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,753 DEBUG Processing 309/1132 atomic regions from SNP 92594 to 93194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,785 DEBUG Processing 342/1020 atomic regions from SNP 102538 to 103138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,824 DEBUG Processing 419/896 atomic regions from SNP 125514 to 126114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,825 DEBUG Processing 426/854 atomic regions from SNP 127736 to 128336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,865 DEBUG Processing 366/474 atomic regions from SNP 109566 to 110166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,880 DEBUG Processing 224/647 atomic regions from SNP 66949 to 67549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,005 DEBUG Processing 310/1132 atomic regions from SNP 92894 to 93494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,029 DEBUG Processing 343/1020 atomic regions from SNP 102838 to 103438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,048 DEBUG Processing 427/854 atomic regions from SNP 128036 to 128636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,049 DEBUG Processing 420/896 atomic regions from SNP 125814 to 126414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,099 DEBUG Processing 367/474 atomic regions from SNP 109866 to 110466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,104 DEBUG Processing 225/647 atomic regions from SNP 67249 to 67849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,257 DEBUG Processing 311/1132 atomic regions from SNP 93194 to 93794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,268 DEBUG Processing 428/854 atomic regions from SNP 128336 to 128936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,270 DEBUG Processing 421/896 atomic regions from SNP 126114 to 126714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,270 DEBUG Processing 344/1020 atomic regions from SNP 103138 to 103738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,335 DEBUG Processing 226/647 atomic regions from SNP 67549 to 68149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,355 DEBUG Processing 368/474 atomic regions from SNP 110166 to 110766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,489 DEBUG Processing 422/896 atomic regions from SNP 126414 to 127014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,491 DEBUG Processing 429/854 atomic regions from SNP 128636 to 129236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,511 DEBUG Processing 312/1132 atomic regions from SNP 93494 to 94094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,514 DEBUG Processing 345/1020 atomic regions from SNP 103438 to 104038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,556 DEBUG Processing 227/647 atomic regions from SNP 67849 to 68449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,608 DEBUG Processing 369/474 atomic regions from SNP 110466 to 111066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,708 DEBUG Processing 423/896 atomic regions from SNP 126714 to 127314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,711 DEBUG Processing 430/854 atomic regions from SNP 128936 to 129536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,760 DEBUG Processing 346/1020 atomic regions from SNP 103738 to 104338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,765 DEBUG Processing 313/1132 atomic regions from SNP 93794 to 94394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,779 DEBUG Processing 228/647 atomic regions from SNP 68149 to 68749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,836 DEBUG Processing 370/474 atomic regions from SNP 110766 to 111366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,933 DEBUG Processing 431/854 atomic regions from SNP 129236 to 129836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,934 DEBUG Processing 424/896 atomic regions from SNP 127014 to 127614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,002 DEBUG Processing 229/647 atomic regions from SNP 68449 to 69049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,006 DEBUG Processing 347/1020 atomic regions from SNP 104038 to 104638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,022 DEBUG Processing 314/1132 atomic regions from SNP 94094 to 94694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,062 DEBUG Processing 371/474 atomic regions from SNP 111066 to 111666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,158 DEBUG Processing 432/854 atomic regions from SNP 129536 to 130136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,161 DEBUG Processing 425/896 atomic regions from SNP 127314 to 127914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,226 DEBUG Processing 230/647 atomic regions from SNP 68749 to 69349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,256 DEBUG Processing 348/1020 atomic regions from SNP 104338 to 104938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,281 DEBUG Processing 315/1132 atomic regions from SNP 94394 to 94994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,292 DEBUG Processing 372/474 atomic regions from SNP 111366 to 111966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,376 DEBUG Processing 433/854 atomic regions from SNP 129836 to 130436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,383 DEBUG Processing 426/896 atomic regions from SNP 127614 to 128214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,446 DEBUG Processing 231/647 atomic regions from SNP 69049 to 69649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,505 DEBUG Processing 349/1020 atomic regions from SNP 104638 to 105238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,521 DEBUG Processing 373/474 atomic regions from SNP 111666 to 112266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,542 DEBUG Processing 316/1132 atomic regions from SNP 94694 to 95294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,596 DEBUG Processing 434/854 atomic regions from SNP 130136 to 130736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,608 DEBUG Processing 427/896 atomic regions from SNP 127914 to 128514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,661 DEBUG Processing 232/647 atomic regions from SNP 69349 to 69949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,749 DEBUG Processing 374/474 atomic regions from SNP 111966 to 112566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,752 DEBUG Processing 350/1020 atomic regions from SNP 104938 to 105538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,799 DEBUG Processing 317/1132 atomic regions from SNP 94994 to 95594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,819 DEBUG Processing 435/854 atomic regions from SNP 130436 to 131036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,838 DEBUG Processing 428/896 atomic regions from SNP 128214 to 128814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,874 DEBUG Processing 233/647 atomic regions from SNP 69649 to 70249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,975 DEBUG Processing 375/474 atomic regions from SNP 112266 to 112866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,995 DEBUG Processing 351/1020 atomic regions from SNP 105238 to 105838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,050 DEBUG Processing 436/854 atomic regions from SNP 130736 to 131336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,062 DEBUG Processing 318/1132 atomic regions from SNP 95294 to 95894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,069 DEBUG Processing 429/896 atomic regions from SNP 128514 to 129114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,098 DEBUG Processing 234/647 atomic regions from SNP 69949 to 70549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,200 DEBUG Processing 376/474 atomic regions from SNP 112566 to 113166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,243 DEBUG Processing 352/1020 atomic regions from SNP 105538 to 106138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,278 DEBUG Processing 437/854 atomic regions from SNP 131036 to 131636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,317 DEBUG Processing 430/896 atomic regions from SNP 128814 to 129414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,323 DEBUG Processing 235/647 atomic regions from SNP 70249 to 70849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,325 DEBUG Processing 319/1132 atomic regions from SNP 95594 to 96194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,424 DEBUG Processing 377/474 atomic regions from SNP 112866 to 113466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,493 DEBUG Processing 353/1020 atomic regions from SNP 105838 to 106438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,507 DEBUG Processing 438/854 atomic regions from SNP 131336 to 131936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,551 DEBUG Processing 236/647 atomic regions from SNP 70549 to 71149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,555 DEBUG Processing 431/896 atomic regions from SNP 129114 to 129714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,595 DEBUG Processing 320/1132 atomic regions from SNP 95894 to 96494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,643 DEBUG Processing 378/474 atomic regions from SNP 113166 to 113766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,733 DEBUG Processing 439/854 atomic regions from SNP 131636 to 132236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,740 DEBUG Processing 354/1020 atomic regions from SNP 106138 to 106738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,776 DEBUG Processing 237/647 atomic regions from SNP 70849 to 71449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,791 DEBUG Processing 432/896 atomic regions from SNP 129414 to 130014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,862 DEBUG Processing 379/474 atomic regions from SNP 113466 to 114066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,870 DEBUG Processing 321/1132 atomic regions from SNP 96194 to 96794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,962 DEBUG Processing 440/854 atomic regions from SNP 131936 to 132536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,989 DEBUG Processing 355/1020 atomic regions from SNP 106438 to 107038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,005 DEBUG Processing 238/647 atomic regions from SNP 71149 to 71749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,021 DEBUG Processing 433/896 atomic regions from SNP 129714 to 130314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,081 DEBUG Processing 380/474 atomic regions from SNP 113766 to 114366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,134 DEBUG Processing 322/1132 atomic regions from SNP 96494 to 97094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,188 DEBUG Processing 441/854 atomic regions from SNP 132236 to 132836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,232 DEBUG Processing 239/647 atomic regions from SNP 71449 to 72049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,237 DEBUG Processing 356/1020 atomic regions from SNP 106738 to 107338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,249 DEBUG Processing 434/896 atomic regions from SNP 130014 to 130614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,303 DEBUG Processing 381/474 atomic regions from SNP 114066 to 114666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,404 DEBUG Processing 323/1132 atomic regions from SNP 96794 to 97394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,415 DEBUG Processing 442/854 atomic regions from SNP 132536 to 133136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,464 DEBUG Processing 240/647 atomic regions from SNP 71749 to 72349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,477 DEBUG Processing 435/896 atomic regions from SNP 130314 to 130914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,487 DEBUG Processing 357/1020 atomic regions from SNP 107038 to 107638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,536 DEBUG Processing 382/474 atomic regions from SNP 114366 to 114966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,644 DEBUG Processing 443/854 atomic regions from SNP 132836 to 133436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,679 DEBUG Processing 324/1132 atomic regions from SNP 97094 to 97694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,694 DEBUG Processing 241/647 atomic regions from SNP 72049 to 72649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,705 DEBUG Processing 436/896 atomic regions from SNP 130614 to 131214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,741 DEBUG Processing 358/1020 atomic regions from SNP 107338 to 107938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,779 DEBUG Processing 383/474 atomic regions from SNP 114666 to 115266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,874 DEBUG Processing 444/854 atomic regions from SNP 133136 to 133736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,924 DEBUG Processing 242/647 atomic regions from SNP 72349 to 72949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,935 DEBUG Processing 437/896 atomic regions from SNP 130914 to 131514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,969 DEBUG Processing 325/1132 atomic regions from SNP 97394 to 97994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,989 DEBUG Processing 359/1020 atomic regions from SNP 107638 to 108238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,996 DEBUG Processing 384/474 atomic regions from SNP 114966 to 115566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,100 DEBUG Processing 445/854 atomic regions from SNP 133436 to 134036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,153 DEBUG Processing 243/647 atomic regions from SNP 72649 to 73249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,171 DEBUG Processing 438/896 atomic regions from SNP 131214 to 131814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,216 DEBUG Processing 385/474 atomic regions from SNP 115266 to 115866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,237 DEBUG Processing 360/1020 atomic regions from SNP 107938 to 108538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,256 DEBUG Processing 326/1132 atomic regions from SNP 97694 to 98294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,324 DEBUG Processing 446/854 atomic regions from SNP 133736 to 134336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,381 DEBUG Processing 244/647 atomic regions from SNP 72949 to 73549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,406 DEBUG Processing 439/896 atomic regions from SNP 131514 to 132114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,442 DEBUG Processing 386/474 atomic regions from SNP 115566 to 116166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,485 DEBUG Processing 361/1020 atomic regions from SNP 108238 to 108838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,539 DEBUG Processing 327/1132 atomic regions from SNP 97994 to 98594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,549 DEBUG Processing 447/854 atomic regions from SNP 134036 to 134636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,620 DEBUG Processing 245/647 atomic regions from SNP 73249 to 73849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,642 DEBUG Processing 440/896 atomic regions from SNP 131814 to 132414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,668 DEBUG Processing 387/474 atomic regions from SNP 115866 to 116466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,727 DEBUG Processing 362/1020 atomic regions from SNP 108538 to 109138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,770 DEBUG Processing 448/854 atomic regions from SNP 134336 to 134936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,819 DEBUG Processing 328/1132 atomic regions from SNP 98294 to 98894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,866 DEBUG Processing 246/647 atomic regions from SNP 73549 to 74149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,885 DEBUG Processing 441/896 atomic regions from SNP 132114 to 132714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,901 DEBUG Processing 388/474 atomic regions from SNP 116166 to 116766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,971 DEBUG Processing 363/1020 atomic regions from SNP 108838 to 109438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,989 DEBUG Processing 449/854 atomic regions from SNP 134636 to 135236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,096 DEBUG Processing 329/1132 atomic regions from SNP 98594 to 99194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,103 DEBUG Processing 247/647 atomic regions from SNP 73849 to 74449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,120 DEBUG Processing 442/896 atomic regions from SNP 132414 to 133014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,130 DEBUG Processing 389/474 atomic regions from SNP 116466 to 117066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:35,207 DEBUG Processing 450/854 atomic regions from SNP 134936 to 135536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,213 DEBUG Processing 364/1020 atomic regions from SNP 109138 to 109738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,337 DEBUG Processing 248/647 atomic regions from SNP 74149 to 74749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,361 DEBUG Processing 443/896 atomic regions from SNP 132714 to 133314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,365 DEBUG Processing 390/474 atomic regions from SNP 116766 to 117366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:35,386 DEBUG Processing 330/1132 atomic regions from SNP 98894 to 99494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,432 DEBUG Processing 451/854 atomic regions from SNP 135236 to 135836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,458 DEBUG Processing 365/1020 atomic regions from SNP 109438 to 110038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,563 DEBUG Processing 249/647 atomic regions from SNP 74449 to 75049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,597 DEBUG Processing 391/474 atomic regions from SNP 117066 to 117666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:35,598 DEBUG Processing 444/896 atomic regions from SNP 133014 to 133614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,670 DEBUG Processing 452/854 atomic regions from SNP 135536 to 136136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,675 DEBUG Processing 331/1132 atomic regions from SNP 99194 to 99794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,713 DEBUG Processing 366/1020 atomic regions from SNP 109738 to 110338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,785 DEBUG Processing 250/647 atomic regions from SNP 74749 to 75349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,825 DEBUG Processing 392/474 atomic regions from SNP 117366 to 117966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:35,831 DEBUG Processing 445/896 atomic regions from SNP 133314 to 133914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,905 DEBUG Processing 453/854 atomic regions from SNP 135836 to 136436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,945 DEBUG Processing 332/1132 atomic regions from SNP 99494 to 100094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,964 DEBUG Processing 367/1020 atomic regions from SNP 110038 to 110638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,003 DEBUG Processing 251/647 atomic regions from SNP 75049 to 75649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,050 DEBUG Processing 393/474 atomic regions from SNP 117666 to 118266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,061 DEBUG Processing 446/896 atomic regions from SNP 133614 to 134214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,143 DEBUG Processing 454/854 atomic regions from SNP 136136 to 136736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,219 DEBUG Processing 333/1132 atomic regions from SNP 99794 to 100394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,222 DEBUG Processing 368/1020 atomic regions from SNP 110338 to 110938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,231 DEBUG Processing 252/647 atomic regions from SNP 75349 to 75949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,277 DEBUG Processing 394/474 atomic regions from SNP 117966 to 118566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,294 DEBUG Processing 447/896 atomic regions from SNP 133914 to 134514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,374 DEBUG Processing 455/854 atomic regions from SNP 136436 to 137036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,464 DEBUG Processing 253/647 atomic regions from SNP 75649 to 76249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,481 DEBUG Processing 369/1020 atomic regions from SNP 110638 to 111238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,483 DEBUG Processing 334/1132 atomic regions from SNP 100094 to 100694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,510 DEBUG Processing 395/474 atomic regions from SNP 118266 to 118866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,534 DEBUG Processing 448/896 atomic regions from SNP 134214 to 134814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,597 DEBUG Processing 456/854 atomic regions from SNP 136736 to 137336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,688 DEBUG Processing 254/647 atomic regions from SNP 75949 to 76549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,732 DEBUG Processing 370/1020 atomic regions from SNP 110938 to 111538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,735 DEBUG Processing 396/474 atomic regions from SNP 118566 to 119166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,743 DEBUG Processing 335/1132 atomic regions from SNP 100394 to 100994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,769 DEBUG Processing 449/896 atomic regions from SNP 134514 to 135114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,831 DEBUG Processing 457/854 atomic regions from SNP 137036 to 137636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,905 DEBUG Processing 255/647 atomic regions from SNP 76249 to 76849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,959 DEBUG Processing 397/474 atomic regions from SNP 118866 to 119466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:36,980 DEBUG Processing 371/1020 atomic regions from SNP 111238 to 111838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,005 DEBUG Processing 336/1132 atomic regions from SNP 100694 to 101294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,007 DEBUG Processing 450/896 atomic regions from SNP 134814 to 135414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,063 DEBUG Processing 458/854 atomic regions from SNP 137336 to 137936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,128 DEBUG Processing 256/647 atomic regions from SNP 76549 to 77149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,182 DEBUG Processing 398/474 atomic regions from SNP 119166 to 119766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:37,226 DEBUG Processing 372/1020 atomic regions from SNP 111538 to 112138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,245 DEBUG Processing 451/896 atomic regions from SNP 135114 to 135714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,265 DEBUG Processing 337/1132 atomic regions from SNP 100994 to 101594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,296 DEBUG Processing 459/854 atomic regions from SNP 137636 to 138236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,353 DEBUG Processing 257/647 atomic regions from SNP 76849 to 77449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,404 DEBUG Processing 399/474 atomic regions from SNP 119466 to 120066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:37,481 DEBUG Processing 452/896 atomic regions from SNP 135414 to 136014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,483 DEBUG Processing 373/1020 atomic regions from SNP 111838 to 112438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,532 DEBUG Processing 338/1132 atomic regions from SNP 101294 to 101894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,535 DEBUG Processing 460/854 atomic regions from SNP 137936 to 138536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,586 DEBUG Processing 258/647 atomic regions from SNP 77149 to 77749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,630 DEBUG Processing 400/474 atomic regions from SNP 119766 to 120366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:37,718 DEBUG Processing 453/896 atomic regions from SNP 135714 to 136314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,734 DEBUG Processing 374/1020 atomic regions from SNP 112138 to 112738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,769 DEBUG Processing 461/854 atomic regions from SNP 138236 to 138836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,796 DEBUG Processing 339/1132 atomic regions from SNP 101594 to 102194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,811 DEBUG Processing 259/647 atomic regions from SNP 77449 to 78049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,852 DEBUG Processing 401/474 atomic regions from SNP 120066 to 120666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:37,956 DEBUG Processing 454/896 atomic regions from SNP 136014 to 136614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,991 DEBUG Processing 375/1020 atomic regions from SNP 112438 to 113038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,005 DEBUG Processing 462/854 atomic regions from SNP 138536 to 139136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,040 DEBUG Processing 260/647 atomic regions from SNP 77749 to 78349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,062 DEBUG Processing 340/1132 atomic regions from SNP 101894 to 102494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,074 DEBUG Processing 402/474 atomic regions from SNP 120366 to 120966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:38,187 DEBUG Processing 455/896 atomic regions from SNP 136314 to 136914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,246 DEBUG Processing 463/854 atomic regions from SNP 138836 to 139436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,251 DEBUG Processing 376/1020 atomic regions from SNP 112738 to 113338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,277 DEBUG Processing 261/647 atomic regions from SNP 78049 to 78649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,301 DEBUG Processing 403/474 atomic regions from SNP 120666 to 121266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:38,329 DEBUG Processing 341/1132 atomic regions from SNP 102194 to 102794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,422 DEBUG Processing 456/896 atomic regions from SNP 136614 to 137214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,488 DEBUG Processing 464/854 atomic regions from SNP 139136 to 139736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,518 DEBUG Processing 377/1020 atomic regions from SNP 113038 to 113638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,519 DEBUG Processing 262/647 atomic regions from SNP 78349 to 78949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,541 DEBUG Processing 404/474 atomic regions from SNP 120966 to 121566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:38,594 DEBUG Processing 342/1132 atomic regions from SNP 102494 to 103094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,666 DEBUG Processing 457/896 atomic regions from SNP 136914 to 137514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,725 DEBUG Processing 465/854 atomic regions from SNP 139436 to 140036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,756 DEBUG Processing 263/647 atomic regions from SNP 78649 to 79249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,771 DEBUG Processing 405/474 atomic regions from SNP 121266 to 121866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:38,779 DEBUG Processing 378/1020 atomic regions from SNP 113338 to 113938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,851 DEBUG Processing 343/1132 atomic regions from SNP 102794 to 103394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,915 DEBUG Processing 458/896 atomic regions from SNP 137214 to 137814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,953 DEBUG Processing 466/854 atomic regions from SNP 139736 to 140336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,993 DEBUG Processing 264/647 atomic regions from SNP 78949 to 79549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,001 DEBUG Processing 406/474 atomic regions from SNP 121566 to 122166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,039 DEBUG Processing 379/1020 atomic regions from SNP 113638 to 114238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,108 DEBUG Processing 344/1132 atomic regions from SNP 103094 to 103694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,168 DEBUG Processing 459/896 atomic regions from SNP 137514 to 138114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,176 DEBUG Processing 467/854 atomic regions from SNP 140036 to 140636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,224 DEBUG Processing 265/647 atomic regions from SNP 79249 to 79849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,228 DEBUG Processing 407/474 atomic regions from SNP 121866 to 122466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,298 DEBUG Processing 380/1020 atomic regions from SNP 113938 to 114538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,367 DEBUG Processing 345/1132 atomic regions from SNP 103394 to 103994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,400 DEBUG Processing 468/854 atomic regions from SNP 140336 to 140936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,421 DEBUG Processing 460/896 atomic regions from SNP 137814 to 138414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,447 DEBUG Processing 266/647 atomic regions from SNP 79549 to 80149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,454 DEBUG Processing 408/474 atomic regions from SNP 122166 to 122766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,558 DEBUG Processing 381/1020 atomic regions from SNP 114238 to 114838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,626 DEBUG Processing 469/854 atomic regions from SNP 140636 to 141236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,631 DEBUG Processing 346/1132 atomic regions from SNP 103694 to 104294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,672 DEBUG Processing 461/896 atomic regions from SNP 138114 to 138714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,673 DEBUG Processing 267/647 atomic regions from SNP 79849 to 80449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,683 DEBUG Processing 409/474 atomic regions from SNP 122466 to 123066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,815 DEBUG Processing 382/1020 atomic regions from SNP 114538 to 115138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,857 DEBUG Processing 470/854 atomic regions from SNP 140936 to 141536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,901 DEBUG Processing 268/647 atomic regions from SNP 80149 to 80749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,915 DEBUG Processing 462/896 atomic regions from SNP 138414 to 139014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,916 DEBUG Processing 410/474 atomic regions from SNP 122766 to 123366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:39,923 DEBUG Processing 347/1132 atomic regions from SNP 103994 to 104594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,065 DEBUG Processing 383/1020 atomic regions from SNP 114838 to 115438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,086 DEBUG Processing 471/854 atomic regions from SNP 141236 to 141836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,133 DEBUG Processing 269/647 atomic regions from SNP 80449 to 81049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,154 DEBUG Processing 411/474 atomic regions from SNP 123066 to 123666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:40,160 DEBUG Processing 463/896 atomic regions from SNP 138714 to 139314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,215 DEBUG Processing 348/1132 atomic regions from SNP 104294 to 104894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,309 DEBUG Processing 472/854 atomic regions from SNP 141536 to 142136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,311 DEBUG Processing 384/1020 atomic regions from SNP 115138 to 115738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,360 DEBUG Processing 270/647 atomic regions from SNP 80749 to 81349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,389 DEBUG Processing 412/474 atomic regions from SNP 123366 to 123966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:40,402 DEBUG Processing 464/896 atomic regions from SNP 139014 to 139614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,501 DEBUG Processing 349/1132 atomic regions from SNP 104594 to 105194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,535 DEBUG Processing 473/854 atomic regions from SNP 141836 to 142436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,564 DEBUG Processing 385/1020 atomic regions from SNP 115438 to 116038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,582 DEBUG Processing 271/647 atomic regions from SNP 81049 to 81649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,627 DEBUG Processing 413/474 atomic regions from SNP 123666 to 124266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:40,645 DEBUG Processing 465/896 atomic regions from SNP 139314 to 139914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,764 DEBUG Processing 474/854 atomic regions from SNP 142136 to 142736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,782 DEBUG Processing 350/1132 atomic regions from SNP 104894 to 105494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,807 DEBUG Processing 272/647 atomic regions from SNP 81349 to 81949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,817 DEBUG Processing 386/1020 atomic regions from SNP 115738 to 116338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,866 DEBUG Processing 414/474 atomic regions from SNP 123966 to 124566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:40,893 DEBUG Processing 466/896 atomic regions from SNP 139614 to 140214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,994 DEBUG Processing 475/854 atomic regions from SNP 142436 to 143036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,039 DEBUG Processing 273/647 atomic regions from SNP 81649 to 82249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,046 DEBUG Processing 351/1132 atomic regions from SNP 105194 to 105794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,075 DEBUG Processing 387/1020 atomic regions from SNP 116038 to 116638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,102 DEBUG Processing 415/474 atomic regions from SNP 124266 to 124866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:41,164 DEBUG Processing 467/896 atomic regions from SNP 139914 to 140514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,223 DEBUG Processing 476/854 atomic regions from SNP 142736 to 143336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,267 DEBUG Processing 274/647 atomic regions from SNP 81949 to 82549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,311 DEBUG Processing 352/1132 atomic regions from SNP 105494 to 106094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,329 DEBUG Processing 388/1020 atomic regions from SNP 116338 to 116938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,331 DEBUG Processing 416/474 atomic regions from SNP 124566 to 125166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:41,438 DEBUG Processing 468/896 atomic regions from SNP 140214 to 140814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,449 DEBUG Processing 477/854 atomic regions from SNP 143036 to 143636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,494 DEBUG Processing 275/647 atomic regions from SNP 82249 to 82849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,555 DEBUG Processing 417/474 atomic regions from SNP 124866 to 125466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:41,574 DEBUG Processing 353/1132 atomic regions from SNP 105794 to 106394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,587 DEBUG Processing 389/1020 atomic regions from SNP 116638 to 117238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,672 DEBUG Processing 478/854 atomic regions from SNP 143336 to 143936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,709 DEBUG Processing 469/896 atomic regions from SNP 140514 to 141114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,718 DEBUG Processing 276/647 atomic regions from SNP 82549 to 83149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,779 DEBUG Processing 418/474 atomic regions from SNP 125166 to 125766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:41,837 DEBUG Processing 354/1132 atomic regions from SNP 106094 to 106694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,841 DEBUG Processing 390/1020 atomic regions from SNP 116938 to 117538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,897 DEBUG Processing 479/854 atomic regions from SNP 143636 to 144236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,939 DEBUG Processing 277/647 atomic regions from SNP 82849 to 83449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,977 DEBUG Processing 470/896 atomic regions from SNP 140814 to 141414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,010 DEBUG Processing 419/474 atomic regions from SNP 125466 to 126066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:42,104 DEBUG Processing 391/1020 atomic regions from SNP 117238 to 117838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,125 DEBUG Processing 355/1132 atomic regions from SNP 106394 to 106994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,134 DEBUG Processing 480/854 atomic regions from SNP 143936 to 144536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,168 DEBUG Processing 278/647 atomic regions from SNP 83149 to 83749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,225 DEBUG Processing 471/896 atomic regions from SNP 141114 to 141714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,248 DEBUG Processing 420/474 atomic regions from SNP 125766 to 126366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:42,369 DEBUG Processing 392/1020 atomic regions from SNP 117538 to 118138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,373 DEBUG Processing 481/854 atomic regions from SNP 144236 to 144836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,400 DEBUG Processing 279/647 atomic regions from SNP 83449 to 84049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,422 DEBUG Processing 356/1132 atomic regions from SNP 106694 to 107294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,473 DEBUG Processing 421/474 atomic regions from SNP 126066 to 126666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:42,480 DEBUG Processing 472/896 atomic regions from SNP 141414 to 142014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,612 DEBUG Processing 482/854 atomic regions from SNP 144536 to 145136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,634 DEBUG Processing 393/1020 atomic regions from SNP 117838 to 118438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,637 DEBUG Processing 280/647 atomic regions from SNP 83749 to 84349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,692 DEBUG Processing 357/1132 atomic regions from SNP 106994 to 107594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,696 DEBUG Processing 422/474 atomic regions from SNP 126366 to 126966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:42,728 DEBUG Processing 473/896 atomic regions from SNP 141714 to 142314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,853 DEBUG Processing 483/854 atomic regions from SNP 144836 to 145436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,878 DEBUG Processing 281/647 atomic regions from SNP 84049 to 84649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,899 DEBUG Processing 394/1020 atomic regions from SNP 118138 to 118738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,923 DEBUG Processing 423/474 atomic regions from SNP 126666 to 127266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:42,977 DEBUG Processing 358/1132 atomic regions from SNP 107294 to 107894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,984 DEBUG Processing 474/896 atomic regions from SNP 142014 to 142614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,086 DEBUG Processing 484/854 atomic regions from SNP 145136 to 145736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,114 DEBUG Processing 282/647 atomic regions from SNP 84349 to 84949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,161 DEBUG Processing 424/474 atomic regions from SNP 126966 to 127566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:43,183 DEBUG Processing 395/1020 atomic regions from SNP 118438 to 119038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,219 DEBUG Processing 475/896 atomic regions from SNP 142314 to 142914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,268 DEBUG Processing 359/1132 atomic regions from SNP 107594 to 108194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,316 DEBUG Processing 485/854 atomic regions from SNP 145436 to 146036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,343 DEBUG Processing 283/647 atomic regions from SNP 84649 to 85249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,404 DEBUG Processing 425/474 atomic regions from SNP 127266 to 127866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:43,454 DEBUG Processing 396/1020 atomic regions from SNP 118738 to 119338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,464 DEBUG Processing 476/896 atomic regions from SNP 142614 to 143214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,545 DEBUG Processing 486/854 atomic regions from SNP 145736 to 146336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,549 DEBUG Processing 360/1132 atomic regions from SNP 107894 to 108494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,565 DEBUG Processing 284/647 atomic regions from SNP 84949 to 85549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,643 DEBUG Processing 426/474 atomic regions from SNP 127566 to 128166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:43,709 DEBUG Processing 477/896 atomic regions from SNP 142914 to 143514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,714 DEBUG Processing 397/1020 atomic regions from SNP 119038 to 119638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,773 DEBUG Processing 487/854 atomic regions from SNP 146036 to 146636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,788 DEBUG Processing 285/647 atomic regions from SNP 85249 to 85849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,819 DEBUG Processing 361/1132 atomic regions from SNP 108194 to 108794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,877 DEBUG Processing 427/474 atomic regions from SNP 127866 to 128466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:43,958 DEBUG Processing 478/896 atomic regions from SNP 143214 to 143814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,970 DEBUG Processing 398/1020 atomic regions from SNP 119338 to 119938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,009 DEBUG Processing 488/854 atomic regions from SNP 146336 to 146936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,018 DEBUG Processing 286/647 atomic regions from SNP 85549 to 86149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,098 DEBUG Processing 428/474 atomic regions from SNP 128166 to 128766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:44,107 DEBUG Processing 362/1132 atomic regions from SNP 108494 to 109094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,213 DEBUG Processing 479/896 atomic regions from SNP 143514 to 144114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,229 DEBUG Processing 399/1020 atomic regions from SNP 119638 to 120238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,246 DEBUG Processing 489/854 atomic regions from SNP 146636 to 147236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,253 DEBUG Processing 287/647 atomic regions from SNP 85849 to 86449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,321 DEBUG Processing 429/474 atomic regions from SNP 128466 to 129066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:44,373 DEBUG Processing 363/1132 atomic regions from SNP 108794 to 109394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,481 DEBUG Processing 490/854 atomic regions from SNP 146936 to 147536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,486 DEBUG Processing 480/896 atomic regions from SNP 143814 to 144414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,486 DEBUG Processing 400/1020 atomic regions from SNP 119938 to 120538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,486 DEBUG Processing 288/647 atomic regions from SNP 86149 to 86749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,555 DEBUG Processing 430/474 atomic regions from SNP 128766 to 129366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:44,626 DEBUG Processing 364/1132 atomic regions from SNP 109094 to 109694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,708 DEBUG Processing 491/854 atomic regions from SNP 147236 to 147836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,713 DEBUG Processing 289/647 atomic regions from SNP 86449 to 87049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,746 DEBUG Processing 401/1020 atomic regions from SNP 120238 to 120838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,760 DEBUG Processing 481/896 atomic regions from SNP 144114 to 144714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,795 DEBUG Processing 431/474 atomic regions from SNP 129066 to 129666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:44,885 DEBUG Processing 365/1132 atomic regions from SNP 109394 to 109994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,935 DEBUG Processing 492/854 atomic regions from SNP 147536 to 148136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,936 DEBUG Processing 290/647 atomic regions from SNP 86749 to 87349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,012 DEBUG Processing 402/1020 atomic regions from SNP 120538 to 121138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,035 DEBUG Processing 432/474 atomic regions from SNP 129366 to 129966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,036 DEBUG Processing 482/896 atomic regions from SNP 144414 to 145014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,148 DEBUG Processing 366/1132 atomic regions from SNP 109694 to 110294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,161 DEBUG Processing 493/854 atomic regions from SNP 147836 to 148436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,162 DEBUG Processing 291/647 atomic regions from SNP 87049 to 87649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,266 DEBUG Processing 403/1020 atomic regions from SNP 120838 to 121438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,268 DEBUG Processing 433/474 atomic regions from SNP 129666 to 130266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,308 DEBUG Processing 483/896 atomic regions from SNP 144714 to 145314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,393 DEBUG Processing 292/647 atomic regions from SNP 87349 to 87949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,393 DEBUG Processing 494/854 atomic regions from SNP 148136 to 148736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,411 DEBUG Processing 367/1132 atomic regions from SNP 109994 to 110594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,495 DEBUG Processing 434/474 atomic regions from SNP 129966 to 130566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,523 DEBUG Processing 404/1020 atomic regions from SNP 121138 to 121738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,585 DEBUG Processing 484/896 atomic regions from SNP 145014 to 145614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,618 DEBUG Processing 293/647 atomic regions from SNP 87649 to 88249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,620 DEBUG Processing 495/854 atomic regions from SNP 148436 to 149036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,672 DEBUG Processing 368/1132 atomic regions from SNP 110294 to 110894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,722 DEBUG Processing 435/474 atomic regions from SNP 130266 to 130866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:45,793 DEBUG Processing 405/1020 atomic regions from SNP 121438 to 122038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,841 DEBUG Processing 294/647 atomic regions from SNP 87949 to 88549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,847 DEBUG Processing 496/854 atomic regions from SNP 148736 to 149336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,857 DEBUG Processing 485/896 atomic regions from SNP 145314 to 145914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,930 DEBUG Processing 369/1132 atomic regions from SNP 110594 to 111194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,956 DEBUG Processing 436/474 atomic regions from SNP 130566 to 131166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:46,068 DEBUG Processing 295/647 atomic regions from SNP 88249 to 88849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,072 DEBUG Processing 406/1020 atomic regions from SNP 121738 to 122338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,073 DEBUG Processing 497/854 atomic regions from SNP 149036 to 149636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,125 DEBUG Processing 486/896 atomic regions from SNP 145614 to 146214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,189 DEBUG Processing 370/1132 atomic regions from SNP 110894 to 111494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,193 DEBUG Processing 437/474 atomic regions from SNP 130866 to 131466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:46,299 DEBUG Processing 296/647 atomic regions from SNP 88549 to 89149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,304 DEBUG Processing 498/854 atomic regions from SNP 149336 to 149936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,331 DEBUG Processing 407/1020 atomic regions from SNP 122038 to 122638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,392 DEBUG Processing 487/896 atomic regions from SNP 145914 to 146514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,426 DEBUG Processing 438/474 atomic regions from SNP 131166 to 131766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:46,445 DEBUG Processing 371/1132 atomic regions from SNP 111194 to 111794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,529 DEBUG Processing 297/647 atomic regions from SNP 88849 to 89449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,537 DEBUG Processing 499/854 atomic regions from SNP 149636 to 150236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,586 DEBUG Processing 408/1020 atomic regions from SNP 122338 to 122938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,655 DEBUG Processing 439/474 atomic regions from SNP 131466 to 132066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:46,660 DEBUG Processing 488/896 atomic regions from SNP 146214 to 146814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,703 DEBUG Processing 372/1132 atomic regions from SNP 111494 to 112094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,764 DEBUG Processing 298/647 atomic regions from SNP 89149 to 89749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,774 DEBUG Processing 500/854 atomic regions from SNP 149936 to 150536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,847 DEBUG Processing 409/1020 atomic regions from SNP 122638 to 123238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,884 DEBUG Processing 440/474 atomic regions from SNP 131766 to 132366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:46,932 DEBUG Processing 489/896 atomic regions from SNP 146514 to 147114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,957 DEBUG Processing 373/1132 atomic regions from SNP 111794 to 112394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,992 DEBUG Processing 299/647 atomic regions from SNP 89449 to 90049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,007 DEBUG Processing 501/854 atomic regions from SNP 150236 to 150836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,107 DEBUG Processing 410/1020 atomic regions from SNP 122938 to 123538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,113 DEBUG Processing 441/474 atomic regions from SNP 132066 to 132666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:47,193 DEBUG Processing 490/896 atomic regions from SNP 146814 to 147414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,212 DEBUG Processing 374/1132 atomic regions from SNP 112094 to 112694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,218 DEBUG Processing 300/647 atomic regions from SNP 89749 to 90349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,234 DEBUG Processing 502/854 atomic regions from SNP 150536 to 151136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,341 DEBUG Processing 442/474 atomic regions from SNP 132366 to 132966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:47,363 DEBUG Processing 411/1020 atomic regions from SNP 123238 to 123838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,441 DEBUG Processing 301/647 atomic regions from SNP 90049 to 90649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,445 DEBUG Processing 491/896 atomic regions from SNP 147114 to 147714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,459 DEBUG Processing 503/854 atomic regions from SNP 150836 to 151436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,469 DEBUG Processing 375/1132 atomic regions from SNP 112394 to 112994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,572 DEBUG Processing 443/474 atomic regions from SNP 132666 to 133266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:47,614 DEBUG Processing 412/1020 atomic regions from SNP 123538 to 124138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,668 DEBUG Processing 302/647 atomic regions from SNP 90349 to 90949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,690 DEBUG Processing 504/854 atomic regions from SNP 151136 to 151736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,704 DEBUG Processing 492/896 atomic regions from SNP 147414 to 148014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,729 DEBUG Processing 376/1132 atomic regions from SNP 112694 to 113294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,795 DEBUG Processing 444/474 atomic regions from SNP 132966 to 133566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:47,869 DEBUG Processing 413/1020 atomic regions from SNP 123838 to 124438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,897 DEBUG Processing 303/647 atomic regions from SNP 90649 to 91249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,923 DEBUG Processing 505/854 atomic regions from SNP 151436 to 152036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,964 DEBUG Processing 493/896 atomic regions from SNP 147714 to 148314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,994 DEBUG Processing 377/1132 atomic regions from SNP 112994 to 113594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,017 DEBUG Processing 445/474 atomic regions from SNP 133266 to 133866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:48,124 DEBUG Processing 414/1020 atomic regions from SNP 124138 to 124738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,128 DEBUG Processing 304/647 atomic regions from SNP 90949 to 91549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,177 DEBUG Processing 506/854 atomic regions from SNP 151736 to 152336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,232 DEBUG Processing 494/896 atomic regions from SNP 148014 to 148614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,241 DEBUG Processing 446/474 atomic regions from SNP 133566 to 134166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:48,258 DEBUG Processing 378/1132 atomic regions from SNP 113294 to 113894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,351 DEBUG Processing 305/647 atomic regions from SNP 91249 to 91849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,399 DEBUG Processing 415/1020 atomic regions from SNP 124438 to 125038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,415 DEBUG Processing 507/854 atomic regions from SNP 152036 to 152636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,477 DEBUG Processing 447/474 atomic regions from SNP 133866 to 134466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:48,514 DEBUG Processing 495/896 atomic regions from SNP 148314 to 148914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,522 DEBUG Processing 379/1132 atomic regions from SNP 113594 to 114194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,573 DEBUG Processing 306/647 atomic regions from SNP 91549 to 92149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,655 DEBUG Processing 416/1020 atomic regions from SNP 124738 to 125338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,656 DEBUG Processing 508/854 atomic regions from SNP 152336 to 152936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,720 DEBUG Processing 448/474 atomic regions from SNP 134166 to 134766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:48,784 DEBUG Processing 380/1132 atomic regions from SNP 113894 to 114494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,792 DEBUG Processing 307/647 atomic regions from SNP 91849 to 92449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,794 DEBUG Processing 496/896 atomic regions from SNP 148614 to 149214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,883 DEBUG Processing 509/854 atomic regions from SNP 152636 to 153236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,914 DEBUG Processing 417/1020 atomic regions from SNP 125038 to 125638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,958 DEBUG Processing 449/474 atomic regions from SNP 134466 to 135066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,021 DEBUG Processing 308/647 atomic regions from SNP 92149 to 92749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,048 DEBUG Processing 381/1132 atomic regions from SNP 114194 to 114794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,070 DEBUG Processing 497/896 atomic regions from SNP 148914 to 149514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,108 DEBUG Processing 510/854 atomic regions from SNP 152936 to 153536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,187 DEBUG Processing 418/1020 atomic regions from SNP 125338 to 125938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,191 DEBUG Processing 450/474 atomic regions from SNP 134766 to 135366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,247 DEBUG Processing 309/647 atomic regions from SNP 92449 to 93049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,310 DEBUG Processing 382/1132 atomic regions from SNP 114494 to 115094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,327 DEBUG Processing 498/896 atomic regions from SNP 149214 to 149814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,335 DEBUG Processing 511/854 atomic regions from SNP 153236 to 153836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,424 DEBUG Processing 451/474 atomic regions from SNP 135066 to 135666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,453 DEBUG Processing 419/1020 atomic regions from SNP 125638 to 126238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,475 DEBUG Processing 310/647 atomic regions from SNP 92749 to 93349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,563 DEBUG Processing 512/854 atomic regions from SNP 153536 to 154136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,568 DEBUG Processing 499/896 atomic regions from SNP 149514 to 150114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,574 DEBUG Processing 383/1132 atomic regions from SNP 114794 to 115394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,656 DEBUG Processing 452/474 atomic regions from SNP 135366 to 135966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,700 DEBUG Processing 311/647 atomic regions from SNP 93049 to 93649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,703 DEBUG Processing 420/1020 atomic regions from SNP 125938 to 126538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,791 DEBUG Processing 513/854 atomic regions from SNP 153836 to 154436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,805 DEBUG Processing 500/896 atomic regions from SNP 149814 to 150414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,836 DEBUG Processing 384/1132 atomic regions from SNP 115094 to 115694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,898 DEBUG Processing 453/474 atomic regions from SNP 135666 to 136266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:49,929 DEBUG Processing 312/647 atomic regions from SNP 93349 to 93949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,953 DEBUG Processing 421/1020 atomic regions from SNP 126238 to 126838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,012 DEBUG Processing 514/854 atomic regions from SNP 154136 to 154736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,033 DEBUG Processing 501/896 atomic regions from SNP 150114 to 150714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,091 DEBUG Processing 385/1132 atomic regions from SNP 115394 to 115994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,139 DEBUG Processing 454/474 atomic regions from SNP 135966 to 136566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:50,157 DEBUG Processing 313/647 atomic regions from SNP 93649 to 94249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,204 DEBUG Processing 422/1020 atomic regions from SNP 126538 to 127138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,232 DEBUG Processing 515/854 atomic regions from SNP 154436 to 155036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,262 DEBUG Processing 502/896 atomic regions from SNP 150414 to 151014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,343 DEBUG Processing 386/1132 atomic regions from SNP 115694 to 116294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,376 DEBUG Processing 455/474 atomic regions from SNP 136266 to 136866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:50,386 DEBUG Processing 314/647 atomic regions from SNP 93949 to 94549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,461 DEBUG Processing 516/854 atomic regions from SNP 154736 to 155336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,462 DEBUG Processing 423/1020 atomic regions from SNP 126838 to 127438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,501 DEBUG Processing 503/896 atomic regions from SNP 150714 to 151314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,593 DEBUG Processing 387/1132 atomic regions from SNP 115994 to 116594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,603 DEBUG Processing 456/474 atomic regions from SNP 136566 to 137166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:50,610 DEBUG Processing 315/647 atomic regions from SNP 94249 to 94849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,693 DEBUG Processing 517/854 atomic regions from SNP 155036 to 155636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,717 DEBUG Processing 424/1020 atomic regions from SNP 127138 to 127738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,746 DEBUG Processing 504/896 atomic regions from SNP 151014 to 151614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,828 DEBUG Processing 457/474 atomic regions from SNP 136866 to 137466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:50,840 DEBUG Processing 316/647 atomic regions from SNP 94549 to 95149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,852 DEBUG Processing 388/1132 atomic regions from SNP 116294 to 116894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,930 DEBUG Processing 518/854 atomic regions from SNP 155336 to 155936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,975 DEBUG Processing 425/1020 atomic regions from SNP 127438 to 128038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,996 DEBUG Processing 505/896 atomic regions from SNP 151314 to 151914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,061 DEBUG Processing 458/474 atomic regions from SNP 137166 to 137766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,067 DEBUG Processing 317/647 atomic regions from SNP 94849 to 95449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,114 DEBUG Processing 389/1132 atomic regions from SNP 116594 to 117194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,158 DEBUG Processing 519/854 atomic regions from SNP 155636 to 156236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,224 DEBUG Processing 426/1020 atomic regions from SNP 127738 to 128338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,238 DEBUG Processing 506/896 atomic regions from SNP 151614 to 152214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,291 DEBUG Processing 318/647 atomic regions from SNP 95149 to 95749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,297 DEBUG Processing 459/474 atomic regions from SNP 137466 to 138066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,378 DEBUG Processing 390/1132 atomic regions from SNP 116894 to 117494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,388 DEBUG Processing 520/854 atomic regions from SNP 155936 to 156536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,471 DEBUG Processing 427/1020 atomic regions from SNP 128038 to 128638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,475 DEBUG Processing 507/896 atomic regions from SNP 151914 to 152514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,515 DEBUG Processing 319/647 atomic regions from SNP 95449 to 96049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,535 DEBUG Processing 460/474 atomic regions from SNP 137766 to 138366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,624 DEBUG Processing 521/854 atomic regions from SNP 156236 to 156836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,641 DEBUG Processing 391/1132 atomic regions from SNP 117194 to 117794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,712 DEBUG Processing 508/896 atomic regions from SNP 152214 to 152814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,719 DEBUG Processing 428/1020 atomic regions from SNP 128338 to 128938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,738 DEBUG Processing 320/647 atomic regions from SNP 95749 to 96349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,767 DEBUG Processing 461/474 atomic regions from SNP 138066 to 138666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:51,869 DEBUG Processing 522/854 atomic regions from SNP 156536 to 157136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,902 DEBUG Processing 392/1132 atomic regions from SNP 117494 to 118094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,951 DEBUG Processing 509/896 atomic regions from SNP 152514 to 153114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,962 DEBUG Processing 321/647 atomic regions from SNP 96049 to 96649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,964 DEBUG Processing 429/1020 atomic regions from SNP 128638 to 129238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,996 DEBUG Processing 462/474 atomic regions from SNP 138366 to 138966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,095 DEBUG Processing 523/854 atomic regions from SNP 156836 to 157436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,165 DEBUG Processing 393/1132 atomic regions from SNP 117794 to 118394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,183 DEBUG Processing 322/647 atomic regions from SNP 96349 to 96949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,190 DEBUG Processing 510/896 atomic regions from SNP 152814 to 153414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,214 DEBUG Processing 430/1020 atomic regions from SNP 128938 to 129538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,227 DEBUG Processing 463/474 atomic regions from SNP 138666 to 139266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,316 DEBUG Processing 524/854 atomic regions from SNP 157136 to 157736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,403 DEBUG Processing 323/647 atomic regions from SNP 96649 to 97249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,422 DEBUG Processing 394/1132 atomic regions from SNP 118094 to 118694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,430 DEBUG Processing 511/896 atomic regions from SNP 153114 to 153714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,462 DEBUG Processing 431/1020 atomic regions from SNP 129238 to 129838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,462 DEBUG Processing 464/474 atomic regions from SNP 138966 to 139566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,541 DEBUG Processing 525/854 atomic regions from SNP 157436 to 158036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,621 DEBUG Processing 324/647 atomic regions from SNP 96949 to 97549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,671 DEBUG Processing 512/896 atomic regions from SNP 153414 to 154014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,675 DEBUG Processing 395/1132 atomic regions from SNP 118394 to 118994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,698 DEBUG Processing 465/474 atomic regions from SNP 139266 to 139866 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,729 DEBUG Processing 432/1020 atomic regions from SNP 129538 to 130138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,765 DEBUG Processing 526/854 atomic regions from SNP 157736 to 158336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,842 DEBUG Processing 325/647 atomic regions from SNP 97249 to 97849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,910 DEBUG Processing 513/896 atomic regions from SNP 153714 to 154314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,928 DEBUG Processing 396/1132 atomic regions from SNP 118694 to 119294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,933 DEBUG Processing 466/474 atomic regions from SNP 139566 to 140166 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:52,976 DEBUG Processing 433/1020 atomic regions from SNP 129838 to 130438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,994 DEBUG Processing 527/854 atomic regions from SNP 158036 to 158636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,065 DEBUG Processing 326/647 atomic regions from SNP 97549 to 98149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,147 DEBUG Processing 514/896 atomic regions from SNP 154014 to 154614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,165 DEBUG Processing 467/474 atomic regions from SNP 139866 to 140466 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,180 DEBUG Processing 397/1132 atomic regions from SNP 118994 to 119594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,222 DEBUG Processing 528/854 atomic regions from SNP 158336 to 158936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,225 DEBUG Processing 434/1020 atomic regions from SNP 130138 to 130738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,288 DEBUG Processing 327/647 atomic regions from SNP 97849 to 98449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,382 DEBUG Processing 515/896 atomic regions from SNP 154314 to 154914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,396 DEBUG Processing 468/474 atomic regions from SNP 140166 to 140766 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,432 DEBUG Processing 398/1132 atomic regions from SNP 119294 to 119894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,448 DEBUG Processing 529/854 atomic regions from SNP 158636 to 159236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,478 DEBUG Processing 435/1020 atomic regions from SNP 130438 to 131038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,519 DEBUG Processing 328/647 atomic regions from SNP 98149 to 98749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,636 DEBUG Processing 469/474 atomic regions from SNP 140466 to 141066 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,637 DEBUG Processing 516/896 atomic regions from SNP 154614 to 155214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,683 DEBUG Processing 530/854 atomic regions from SNP 158936 to 159536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,694 DEBUG Processing 399/1132 atomic regions from SNP 119594 to 120194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,735 DEBUG Processing 436/1020 atomic regions from SNP 130738 to 131338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,754 DEBUG Processing 329/647 atomic regions from SNP 98449 to 99049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,877 DEBUG Processing 470/474 atomic regions from SNP 140766 to 141366 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:53,907 DEBUG Processing 517/896 atomic regions from SNP 154914 to 155514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,918 DEBUG Processing 531/854 atomic regions from SNP 159236 to 159836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,963 DEBUG Processing 400/1132 atomic regions from SNP 119894 to 120494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,998 DEBUG Processing 330/647 atomic regions from SNP 98749 to 99349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,999 DEBUG Processing 437/1020 atomic regions from SNP 131038 to 131638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,116 DEBUG Processing 471/474 atomic regions from SNP 141066 to 141666 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,144 DEBUG Processing 532/854 atomic regions from SNP 159536 to 160136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,180 DEBUG Processing 518/896 atomic regions from SNP 155214 to 155814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,228 DEBUG Processing 331/647 atomic regions from SNP 99049 to 99649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,229 DEBUG Processing 401/1132 atomic regions from SNP 120194 to 120794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,252 DEBUG Processing 438/1020 atomic regions from SNP 131338 to 131938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,355 DEBUG Processing 472/474 atomic regions from SNP 141366 to 141966 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,368 DEBUG Processing 533/854 atomic regions from SNP 159836 to 160436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,455 DEBUG Processing 519/896 atomic regions from SNP 155514 to 156114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,460 DEBUG Processing 332/647 atomic regions from SNP 99349 to 99949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,491 DEBUG Processing 402/1132 atomic regions from SNP 120494 to 121094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,505 DEBUG Processing 439/1020 atomic regions from SNP 131638 to 132238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,592 DEBUG Processing 473/474 atomic regions from SNP 141666 to 142266 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,594 DEBUG Processing 534/854 atomic regions from SNP 160136 to 160736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,696 DEBUG Processing 333/647 atomic regions from SNP 99649 to 100249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,733 DEBUG Processing 520/896 atomic regions from SNP 155814 to 156414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,758 DEBUG Processing 403/1132 atomic regions from SNP 120794 to 121394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,760 DEBUG Processing 440/1020 atomic regions from SNP 131938 to 132538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,812 DEBUG Processing 535/854 atomic regions from SNP 160436 to 161036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,822 DEBUG Processing 474/474 atomic regions from SNP 141966 to 142566 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:54,931 DEBUG Processing 334/647 atomic regions from SNP 99949 to 100549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,946 DEBUG Unique SNPs positions in subchromosome 4: 142567 2025-01-31 09:44:55,010 DEBUG Processing 521/896 atomic regions from SNP 156114 to 156714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,017 DEBUG Processing 441/1020 atomic regions from SNP 132238 to 132838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,030 DEBUG Processing 536/854 atomic regions from SNP 160736 to 161336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,056 DEBUG Processing 404/1132 atomic regions from SNP 121094 to 121694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,161 DEBUG Processing 335/647 atomic regions from SNP 100249 to 100849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,257 DEBUG Processing 537/854 atomic regions from SNP 161036 to 161636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,270 DEBUG Processing 442/1020 atomic regions from SNP 132538 to 133138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,282 DEBUG Processing 522/896 atomic regions from SNP 156414 to 157014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,308 DEBUG Subchromosome time: 132.72282296896446, subchromosome SNPs: 142567 2025-01-31 09:44:55,326 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:55,330 DEBUG Processing 405/1132 atomic regions from SNP 121394 to 121994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,382 DEBUG Processing 336/647 atomic regions from SNP 100549 to 101149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,487 DEBUG Processing 538/854 atomic regions from SNP 161336 to 161936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,522 DEBUG Processing 443/1020 atomic regions from SNP 132838 to 133438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,545 DEBUG Processing 523/896 atomic regions from SNP 156714 to 157314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,583 DEBUG Processing 406/1132 atomic regions from SNP 121694 to 122294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,599 DEBUG Processing 337/647 atomic regions from SNP 100849 to 101449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,723 DEBUG Processing 539/854 atomic regions from SNP 161636 to 162236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,776 DEBUG Processing 444/1020 atomic regions from SNP 133138 to 133738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,814 DEBUG Processing 338/647 atomic regions from SNP 101149 to 101749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,818 DEBUG Processing 524/896 atomic regions from SNP 157014 to 157614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,841 DEBUG Processing 407/1132 atomic regions from SNP 121994 to 122594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,953 DEBUG Processing 540/854 atomic regions from SNP 161936 to 162536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,030 DEBUG Processing 445/1020 atomic regions from SNP 133438 to 134038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,038 DEBUG Processing 339/647 atomic regions from SNP 101449 to 102049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,093 DEBUG Processing 525/896 atomic regions from SNP 157314 to 157914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,097 DEBUG Processing 408/1132 atomic regions from SNP 122294 to 122894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,177 DEBUG Processing 541/854 atomic regions from SNP 162236 to 162836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,274 DEBUG Processing 340/647 atomic regions from SNP 101749 to 102349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,286 DEBUG Processing 446/1020 atomic regions from SNP 133738 to 134338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,356 DEBUG Processing 409/1132 atomic regions from SNP 122594 to 123194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,372 DEBUG Processing 526/896 atomic regions from SNP 157614 to 158214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,404 DEBUG Processing 542/854 atomic regions from SNP 162536 to 163136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,503 DEBUG Processing 341/647 atomic regions from SNP 102049 to 102649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,540 DEBUG Processing 447/1020 atomic regions from SNP 134038 to 134638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,615 DEBUG Processing 410/1132 atomic regions from SNP 122894 to 123494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,640 DEBUG Processing 543/854 atomic regions from SNP 162836 to 163436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,642 DEBUG Processing 527/896 atomic regions from SNP 157914 to 158514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,728 DEBUG Processing 342/647 atomic regions from SNP 102349 to 102949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,795 DEBUG Processing 448/1020 atomic regions from SNP 134338 to 134938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,869 DEBUG Processing 544/854 atomic regions from SNP 163136 to 163736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,869 DEBUG Processing 411/1132 atomic regions from SNP 123194 to 123794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,909 DEBUG Processing 528/896 atomic regions from SNP 158214 to 158814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,951 DEBUG Processing 343/647 atomic regions from SNP 102649 to 103249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,047 DEBUG Processing 449/1020 atomic regions from SNP 134638 to 135238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,096 DEBUG Processing 545/854 atomic regions from SNP 163436 to 164036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,130 DEBUG Processing 412/1132 atomic regions from SNP 123494 to 124094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,168 DEBUG Processing 344/647 atomic regions from SNP 102949 to 103549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,183 DEBUG Processing 529/896 atomic regions from SNP 158514 to 159114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,294 DEBUG Processing 450/1020 atomic regions from SNP 134938 to 135538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,324 DEBUG Processing 546/854 atomic regions from SNP 163736 to 164336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,389 DEBUG Processing 413/1132 atomic regions from SNP 123794 to 124394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,390 DEBUG Processing 345/647 atomic regions from SNP 103249 to 103849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,459 DEBUG Processing 530/896 atomic regions from SNP 158814 to 159414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,539 DEBUG Processing 451/1020 atomic regions from SNP 135238 to 135838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,550 DEBUG Processing 547/854 atomic regions from SNP 164036 to 164636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,618 DEBUG Processing 346/647 atomic regions from SNP 103549 to 104149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,652 DEBUG Processing 414/1132 atomic regions from SNP 124094 to 124694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,718 DEBUG Processing 531/896 atomic regions from SNP 159114 to 159714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,768 DEBUG Processing 548/854 atomic regions from SNP 164336 to 164936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,778 DEBUG Processing 452/1020 atomic regions from SNP 135538 to 136138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,845 DEBUG Processing 347/647 atomic regions from SNP 103849 to 104449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,922 DEBUG Processing 415/1132 atomic regions from SNP 124394 to 124994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,963 DEBUG Processing 532/896 atomic regions from SNP 159414 to 160014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,983 DEBUG Processing 549/854 atomic regions from SNP 164636 to 165236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,017 DEBUG Processing 453/1020 atomic regions from SNP 135838 to 136438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,066 DEBUG Processing 348/647 atomic regions from SNP 104149 to 104749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,203 DEBUG Processing 416/1132 atomic regions from SNP 124694 to 125294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,203 DEBUG Processing 550/854 atomic regions from SNP 164936 to 165536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,226 DEBUG Processing 533/896 atomic regions from SNP 159714 to 160314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,257 DEBUG Processing 454/1020 atomic regions from SNP 136138 to 136738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,284 DEBUG Processing 349/647 atomic regions from SNP 104449 to 105049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,433 DEBUG Processing 551/854 atomic regions from SNP 165236 to 165836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,472 DEBUG Processing 534/896 atomic regions from SNP 160014 to 160614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,501 DEBUG Processing 417/1132 atomic regions from SNP 124994 to 125594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,506 DEBUG Processing 455/1020 atomic regions from SNP 136438 to 137038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,508 DEBUG Processing 350/647 atomic regions from SNP 104749 to 105349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,670 DEBUG Processing 552/854 atomic regions from SNP 165536 to 166136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,735 DEBUG Processing 535/896 atomic regions from SNP 160314 to 160914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,736 DEBUG Processing 351/647 atomic regions from SNP 105049 to 105649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,756 DEBUG Processing 456/1020 atomic regions from SNP 136738 to 137338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,795 DEBUG Processing 418/1132 atomic regions from SNP 125294 to 125894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,898 DEBUG Processing 553/854 atomic regions from SNP 165836 to 166436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,963 DEBUG Processing 352/647 atomic regions from SNP 105349 to 105949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,996 DEBUG Processing 536/896 atomic regions from SNP 160614 to 161214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,015 DEBUG Processing 457/1020 atomic regions from SNP 137038 to 137638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,096 DEBUG Processing 419/1132 atomic regions from SNP 125594 to 126194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,130 DEBUG Processing 554/854 atomic regions from SNP 166136 to 166736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,196 DEBUG Processing 353/647 atomic regions from SNP 105649 to 106249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,255 DEBUG Processing 537/896 atomic regions from SNP 160914 to 161514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,280 DEBUG Processing 458/1020 atomic regions from SNP 137338 to 137938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,360 DEBUG Processing 555/854 atomic regions from SNP 166436 to 167036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,389 DEBUG Processing 420/1132 atomic regions from SNP 125894 to 126494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,423 DEBUG Processing 354/647 atomic regions from SNP 105949 to 106549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,514 DEBUG Processing 538/896 atomic regions from SNP 161214 to 161814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,541 DEBUG Processing 459/1020 atomic regions from SNP 137638 to 138238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,607 DEBUG Processing 556/854 atomic regions from SNP 166736 to 167336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,650 DEBUG Processing 355/647 atomic regions from SNP 106249 to 106849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,689 DEBUG Processing 421/1132 atomic regions from SNP 126194 to 126794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,762 DEBUG Processing 539/896 atomic regions from SNP 161514 to 162114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,800 DEBUG Processing 460/1020 atomic regions from SNP 137938 to 138538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,863 DEBUG Processing 557/854 atomic regions from SNP 167036 to 167636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,904 DEBUG Processing 356/647 atomic regions from SNP 106549 to 107149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,026 DEBUG Processing 422/1132 atomic regions from SNP 126494 to 127094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,046 DEBUG Processing 540/896 atomic regions from SNP 161814 to 162414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,093 DEBUG Processing 461/1020 atomic regions from SNP 138238 to 138838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,155 DEBUG Processing 558/854 atomic regions from SNP 167336 to 167936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,187 DEBUG Processing 357/647 atomic regions from SNP 106849 to 107449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,379 DEBUG Processing 541/896 atomic regions from SNP 162114 to 162714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,403 DEBUG Processing 423/1132 atomic regions from SNP 126794 to 127394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,422 DEBUG Processing 462/1020 atomic regions from SNP 138538 to 139138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,458 DEBUG Processing 559/854 atomic regions from SNP 167636 to 168236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,483 DEBUG Processing 358/647 atomic regions from SNP 107149 to 107749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,622 DEBUG Processing 542/896 atomic regions from SNP 162414 to 163014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,686 DEBUG Processing 463/1020 atomic regions from SNP 138838 to 139438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,698 DEBUG Processing 560/854 atomic regions from SNP 167936 to 168536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,705 DEBUG Processing 424/1132 atomic regions from SNP 127094 to 127694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,719 DEBUG Processing 359/647 atomic regions from SNP 107449 to 108049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,858 DEBUG Processing 543/896 atomic regions from SNP 162714 to 163314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,930 DEBUG Processing 561/854 atomic regions from SNP 168236 to 168836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,942 DEBUG Processing 464/1020 atomic regions from SNP 139138 to 139738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,949 DEBUG Processing 360/647 atomic regions from SNP 107749 to 108349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,980 DEBUG Processing 425/1132 atomic regions from SNP 127394 to 127994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,091 DEBUG Processing 544/896 atomic regions from SNP 163014 to 163614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,180 DEBUG Processing 562/854 atomic regions from SNP 168536 to 169136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,190 DEBUG Processing 361/647 atomic regions from SNP 108049 to 108649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,195 DEBUG Processing 465/1020 atomic regions from SNP 139438 to 140038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,243 DEBUG Processing 426/1132 atomic regions from SNP 127694 to 128294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,324 DEBUG Processing 545/896 atomic regions from SNP 163314 to 163914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,437 DEBUG Processing 362/647 atomic regions from SNP 108349 to 108949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,440 DEBUG Processing 563/854 atomic regions from SNP 168836 to 169436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,448 DEBUG Processing 466/1020 atomic regions from SNP 139738 to 140338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,511 DEBUG Processing 427/1132 atomic regions from SNP 127994 to 128594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,552 DEBUG Processing 546/896 atomic regions from SNP 163614 to 164214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,690 DEBUG Processing 363/647 atomic regions from SNP 108649 to 109249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,695 DEBUG Processing 564/854 atomic regions from SNP 169136 to 169736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,704 DEBUG Processing 467/1020 atomic regions from SNP 140038 to 140638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,783 DEBUG Processing 547/896 atomic regions from SNP 163914 to 164514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,786 DEBUG Processing 428/1132 atomic regions from SNP 128294 to 128894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,945 DEBUG Processing 364/647 atomic regions from SNP 108949 to 109549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,954 DEBUG Processing 565/854 atomic regions from SNP 169436 to 170036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,965 DEBUG Processing 468/1020 atomic regions from SNP 140338 to 140938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,016 DEBUG Processing 548/896 atomic regions from SNP 164214 to 164814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,061 DEBUG Processing 429/1132 atomic regions from SNP 128594 to 129194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,228 DEBUG Processing 566/854 atomic regions from SNP 169736 to 170336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,237 DEBUG Processing 365/647 atomic regions from SNP 109249 to 109849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,264 DEBUG Processing 469/1020 atomic regions from SNP 140638 to 141238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,308 DEBUG Processing 549/896 atomic regions from SNP 164514 to 165114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,355 DEBUG Processing 430/1132 atomic regions from SNP 128894 to 129494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,461 DEBUG Processing 567/854 atomic regions from SNP 170036 to 170636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,494 DEBUG Processing 366/647 atomic regions from SNP 109549 to 110149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,527 DEBUG Processing 470/1020 atomic regions from SNP 140938 to 141538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,550 DEBUG Processing 550/896 atomic regions from SNP 164814 to 165414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,632 DEBUG Processing 431/1132 atomic regions from SNP 129194 to 129794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,693 DEBUG Processing 568/854 atomic regions from SNP 170336 to 170936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,735 DEBUG Processing 367/647 atomic regions from SNP 109849 to 110449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,783 DEBUG Processing 471/1020 atomic regions from SNP 141238 to 141838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,789 DEBUG Processing 551/896 atomic regions from SNP 165114 to 165714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,895 DEBUG Processing 432/1132 atomic regions from SNP 129494 to 130094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,930 DEBUG Processing 569/854 atomic regions from SNP 170636 to 171236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,977 DEBUG Processing 368/647 atomic regions from SNP 110149 to 110749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,033 DEBUG Processing 472/1020 atomic regions from SNP 141538 to 142138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,044 DEBUG Processing 552/896 atomic regions from SNP 165414 to 166014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,156 DEBUG Processing 433/1132 atomic regions from SNP 129794 to 130394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,160 DEBUG Processing 570/854 atomic regions from SNP 170936 to 171536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,232 DEBUG Processing 369/647 atomic regions from SNP 110449 to 111049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,278 DEBUG Processing 473/1020 atomic regions from SNP 141838 to 142438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,281 DEBUG Processing 553/896 atomic regions from SNP 165714 to 166314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,388 DEBUG Processing 571/854 atomic regions from SNP 171236 to 171836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,416 DEBUG Processing 434/1132 atomic regions from SNP 130094 to 130694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,495 DEBUG Processing 370/647 atomic regions from SNP 110749 to 111349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,529 DEBUG Processing 554/896 atomic regions from SNP 166014 to 166614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,530 DEBUG Processing 474/1020 atomic regions from SNP 142138 to 142738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,613 DEBUG Processing 572/854 atomic regions from SNP 171536 to 172136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,677 DEBUG Processing 435/1132 atomic regions from SNP 130394 to 130994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,746 DEBUG Processing 371/647 atomic regions from SNP 111049 to 111649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,781 DEBUG Processing 475/1020 atomic regions from SNP 142438 to 143038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,786 DEBUG Processing 555/896 atomic regions from SNP 166314 to 166914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,848 DEBUG Processing 573/854 atomic regions from SNP 171836 to 172436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,934 DEBUG Processing 436/1132 atomic regions from SNP 130694 to 131294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,973 DEBUG Processing 372/647 atomic regions from SNP 111349 to 111949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,021 DEBUG Processing 556/896 atomic regions from SNP 166614 to 167214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,033 DEBUG Processing 476/1020 atomic regions from SNP 142738 to 143338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,060 DEBUG Segmenting atomic regions: 2025-01-31 09:45:04,080 DEBUG Processing 574/854 atomic regions from SNP 172136 to 172736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,169 DEBUG Processing 1/235 atomic regions from SNP 0 to 601 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:04,195 DEBUG Processing 437/1132 atomic regions from SNP 130994 to 131594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,202 DEBUG Processing 373/647 atomic regions from SNP 111649 to 112249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,281 DEBUG Processing 557/896 atomic regions from SNP 166914 to 167514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,284 DEBUG Processing 477/1020 atomic regions from SNP 143038 to 143638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,304 DEBUG Processing 575/854 atomic regions from SNP 172436 to 173036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,390 DEBUG Processing 2/235 atomic regions from SNP 301 to 902 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:04,431 DEBUG Processing 374/647 atomic regions from SNP 111949 to 112549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,457 DEBUG Processing 438/1132 atomic regions from SNP 131294 to 131894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,533 DEBUG Processing 576/854 atomic regions from SNP 172736 to 173336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,535 DEBUG Processing 478/1020 atomic regions from SNP 143338 to 143938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,555 DEBUG Processing 558/896 atomic regions from SNP 167214 to 167814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,606 DEBUG Processing 3/235 atomic regions from SNP 602 to 1203 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:04,662 DEBUG Processing 375/647 atomic regions from SNP 112249 to 112849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,721 DEBUG Processing 439/1132 atomic regions from SNP 131594 to 132194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,762 DEBUG Processing 577/854 atomic regions from SNP 173036 to 173636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,789 DEBUG Processing 479/1020 atomic regions from SNP 143638 to 144238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,819 DEBUG Processing 4/235 atomic regions from SNP 903 to 1504 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:04,821 DEBUG Processing 559/896 atomic regions from SNP 167514 to 168114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,900 DEBUG Processing 376/647 atomic regions from SNP 112549 to 113149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,982 DEBUG Processing 440/1132 atomic regions from SNP 131894 to 132494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,990 DEBUG Processing 578/854 atomic regions from SNP 173336 to 173936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,040 DEBUG Processing 480/1020 atomic regions from SNP 143938 to 144538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,050 DEBUG Processing 5/235 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:05,065 DEBUG Processing 560/896 atomic regions from SNP 167814 to 168414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,133 DEBUG Processing 377/647 atomic regions from SNP 112849 to 113449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,219 DEBUG Processing 579/854 atomic regions from SNP 173636 to 174236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,247 DEBUG Processing 441/1132 atomic regions from SNP 132194 to 132794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,274 DEBUG Processing 6/235 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:05,288 DEBUG Processing 481/1020 atomic regions from SNP 144238 to 144838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,307 DEBUG Processing 561/896 atomic regions from SNP 168114 to 168714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,368 DEBUG Processing 378/647 atomic regions from SNP 113149 to 113749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,455 DEBUG Processing 580/854 atomic regions from SNP 173936 to 174536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,495 DEBUG Processing 7/235 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:05,520 DEBUG Processing 442/1132 atomic regions from SNP 132494 to 133094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,539 DEBUG Processing 482/1020 atomic regions from SNP 144538 to 145138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,575 DEBUG Processing 562/896 atomic regions from SNP 168414 to 169014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,625 DEBUG Processing 379/647 atomic regions from SNP 113449 to 114049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,685 DEBUG Processing 581/854 atomic regions from SNP 174236 to 174836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,710 DEBUG Processing 8/235 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:05,785 DEBUG Processing 443/1132 atomic regions from SNP 132794 to 133394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,786 DEBUG Processing 483/1020 atomic regions from SNP 144838 to 145438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,842 DEBUG Processing 563/896 atomic regions from SNP 168714 to 169314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,888 DEBUG Processing 380/647 atomic regions from SNP 113749 to 114349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,927 DEBUG Processing 582/854 atomic regions from SNP 174536 to 175136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,936 DEBUG Processing 9/235 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:06,045 DEBUG Processing 444/1132 atomic regions from SNP 133094 to 133694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,074 DEBUG Processing 484/1020 atomic regions from SNP 145138 to 145738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,096 DEBUG Processing 564/896 atomic regions from SNP 169014 to 169614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,149 DEBUG Processing 381/647 atomic regions from SNP 114049 to 114649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,169 DEBUG Processing 10/235 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:06,184 DEBUG Processing 583/854 atomic regions from SNP 174836 to 175436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,300 DEBUG Processing 445/1132 atomic regions from SNP 133394 to 133994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,333 DEBUG Processing 565/896 atomic regions from SNP 169314 to 169914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,363 DEBUG Processing 485/1020 atomic regions from SNP 145438 to 146038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,383 DEBUG Processing 382/647 atomic regions from SNP 114349 to 114949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,391 DEBUG Processing 11/235 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:06,418 DEBUG Processing 584/854 atomic regions from SNP 175136 to 175736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,551 DEBUG Processing 446/1132 atomic regions from SNP 133694 to 134294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,560 DEBUG Processing 566/896 atomic regions from SNP 169614 to 170214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,608 DEBUG Processing 12/235 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:06,612 DEBUG Processing 383/647 atomic regions from SNP 114649 to 115249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,645 DEBUG Processing 486/1020 atomic regions from SNP 145738 to 146338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,650 DEBUG Processing 585/854 atomic regions from SNP 175436 to 176036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,798 DEBUG Processing 567/896 atomic regions from SNP 169914 to 170514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,805 DEBUG Processing 447/1132 atomic regions from SNP 133994 to 134594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,824 DEBUG Processing 13/235 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:06,839 DEBUG Processing 384/647 atomic regions from SNP 114949 to 115549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,880 DEBUG Processing 586/854 atomic regions from SNP 175736 to 176336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,906 DEBUG Processing 487/1020 atomic regions from SNP 146038 to 146638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,047 DEBUG Processing 14/235 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:07,067 DEBUG Processing 448/1132 atomic regions from SNP 134294 to 134894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,068 DEBUG Processing 568/896 atomic regions from SNP 170214 to 170814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,068 DEBUG Processing 385/647 atomic regions from SNP 115249 to 115849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,126 DEBUG Processing 587/854 atomic regions from SNP 176036 to 176636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,160 DEBUG Processing 488/1020 atomic regions from SNP 146338 to 146938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,274 DEBUG Processing 15/235 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:07,302 DEBUG Processing 386/647 atomic regions from SNP 115549 to 116149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,331 DEBUG Processing 449/1132 atomic regions from SNP 134594 to 135194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,337 DEBUG Processing 569/896 atomic regions from SNP 170514 to 171114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,383 DEBUG Processing 588/854 atomic regions from SNP 176336 to 176936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,412 DEBUG Processing 489/1020 atomic regions from SNP 146638 to 147238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,498 DEBUG Processing 16/235 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:07,534 DEBUG Processing 387/647 atomic regions from SNP 115849 to 116449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,605 DEBUG Processing 570/896 atomic regions from SNP 170814 to 171414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,607 DEBUG Processing 450/1132 atomic regions from SNP 134894 to 135494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,620 DEBUG Processing 589/854 atomic regions from SNP 176636 to 177236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,677 DEBUG Processing 490/1020 atomic regions from SNP 146938 to 147538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,734 DEBUG Processing 17/235 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:07,776 DEBUG Processing 388/647 atomic regions from SNP 116149 to 116749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,854 DEBUG Processing 571/896 atomic regions from SNP 171114 to 171714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,861 DEBUG Processing 590/854 atomic regions from SNP 176936 to 177536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,875 DEBUG Processing 451/1132 atomic regions from SNP 135194 to 135794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,953 DEBUG Processing 491/1020 atomic regions from SNP 147238 to 147838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,993 DEBUG Processing 18/235 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:08,027 DEBUG Processing 389/647 atomic regions from SNP 116449 to 117049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,103 DEBUG Processing 591/854 atomic regions from SNP 177236 to 177836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,117 DEBUG Processing 572/896 atomic regions from SNP 171414 to 172014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,144 DEBUG Processing 452/1132 atomic regions from SNP 135494 to 136094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,202 DEBUG Processing 492/1020 atomic regions from SNP 147538 to 148138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,208 DEBUG Processing 19/235 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:08,258 DEBUG Processing 390/647 atomic regions from SNP 116749 to 117349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,357 DEBUG Processing 592/854 atomic regions from SNP 177536 to 178136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,370 DEBUG Processing 573/896 atomic regions from SNP 171714 to 172314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,407 DEBUG Processing 453/1132 atomic regions from SNP 135794 to 136394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,419 DEBUG Processing 20/235 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:08,454 DEBUG Processing 493/1020 atomic regions from SNP 147838 to 148438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,482 DEBUG Processing 391/647 atomic regions from SNP 117049 to 117649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,587 DEBUG Processing 593/854 atomic regions from SNP 177836 to 178436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,607 DEBUG Processing 574/896 atomic regions from SNP 172014 to 172614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,637 DEBUG Processing 21/235 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:08,674 DEBUG Processing 454/1132 atomic regions from SNP 136094 to 136694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,709 DEBUG Processing 494/1020 atomic regions from SNP 148138 to 148738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,710 DEBUG Processing 392/647 atomic regions from SNP 117349 to 117949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,814 DEBUG Processing 594/854 atomic regions from SNP 178136 to 178736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,855 DEBUG Processing 575/896 atomic regions from SNP 172314 to 172914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,863 DEBUG Processing 22/235 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:08,946 DEBUG Processing 393/647 atomic regions from SNP 117649 to 118249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,946 DEBUG Processing 455/1132 atomic regions from SNP 136394 to 136994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,971 DEBUG Processing 495/1020 atomic regions from SNP 148438 to 149038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,038 DEBUG Processing 595/854 atomic regions from SNP 178436 to 179036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,079 DEBUG Processing 23/235 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,107 DEBUG Processing 576/896 atomic regions from SNP 172614 to 173214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,184 DEBUG Processing 394/647 atomic regions from SNP 117949 to 118549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,217 DEBUG Processing 456/1132 atomic regions from SNP 136694 to 137294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,232 DEBUG Processing 496/1020 atomic regions from SNP 148738 to 149338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,264 DEBUG Processing 596/854 atomic regions from SNP 178736 to 179336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,294 DEBUG Processing 24/235 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,356 DEBUG Processing 577/896 atomic regions from SNP 172914 to 173514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,417 DEBUG Processing 395/647 atomic regions from SNP 118249 to 118849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,487 DEBUG Processing 457/1132 atomic regions from SNP 136994 to 137594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,491 DEBUG Processing 497/1020 atomic regions from SNP 149038 to 149638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,495 DEBUG Processing 597/854 atomic regions from SNP 179036 to 179636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,506 DEBUG Processing 25/235 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,614 DEBUG Processing 578/896 atomic regions from SNP 173214 to 173814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,643 DEBUG Processing 396/647 atomic regions from SNP 118549 to 119149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,724 DEBUG Processing 26/235 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,726 DEBUG Processing 598/854 atomic regions from SNP 179336 to 179936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,745 DEBUG Processing 498/1020 atomic regions from SNP 149338 to 149938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,751 DEBUG Processing 458/1132 atomic regions from SNP 137294 to 137894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,870 DEBUG Processing 397/647 atomic regions from SNP 118849 to 119449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,873 DEBUG Processing 579/896 atomic regions from SNP 173514 to 174114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,945 DEBUG Processing 27/235 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,966 DEBUG Processing 599/854 atomic regions from SNP 179636 to 180236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,001 DEBUG Processing 499/1020 atomic regions from SNP 149638 to 150238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,017 DEBUG Processing 459/1132 atomic regions from SNP 137594 to 138194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,100 DEBUG Processing 398/647 atomic regions from SNP 119149 to 119749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,129 DEBUG Processing 580/896 atomic regions from SNP 173814 to 174414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,167 DEBUG Processing 28/235 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:10,219 DEBUG Processing 600/854 atomic regions from SNP 179936 to 180536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,263 DEBUG Processing 500/1020 atomic regions from SNP 149938 to 150538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,286 DEBUG Processing 460/1132 atomic regions from SNP 137894 to 138494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,335 DEBUG Processing 399/647 atomic regions from SNP 119449 to 120049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,370 DEBUG Processing 581/896 atomic regions from SNP 174114 to 174714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,382 DEBUG Processing 29/235 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:10,471 DEBUG Processing 601/854 atomic regions from SNP 180236 to 180836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,545 DEBUG Processing 501/1020 atomic regions from SNP 150238 to 150838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,584 DEBUG Processing 461/1132 atomic regions from SNP 138194 to 138794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,625 DEBUG Processing 400/647 atomic regions from SNP 119749 to 120349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,649 DEBUG Processing 30/235 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:10,658 DEBUG Processing 582/896 atomic regions from SNP 174414 to 175014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,758 DEBUG Processing 602/854 atomic regions from SNP 180536 to 181136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,832 DEBUG Processing 502/1020 atomic regions from SNP 150538 to 151138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,920 DEBUG Processing 462/1132 atomic regions from SNP 138494 to 139094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,949 DEBUG Processing 401/647 atomic regions from SNP 120049 to 120649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,970 DEBUG Processing 31/235 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:10,990 DEBUG Processing 583/896 atomic regions from SNP 174714 to 175314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,069 DEBUG Processing 603/854 atomic regions from SNP 180836 to 181436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,128 DEBUG Processing 503/1020 atomic regions from SNP 150838 to 151438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,274 DEBUG Processing 463/1132 atomic regions from SNP 138794 to 139394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,293 DEBUG Processing 402/647 atomic regions from SNP 120349 to 120949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,323 DEBUG Processing 32/235 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:11,362 DEBUG Processing 584/896 atomic regions from SNP 175014 to 175614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,391 DEBUG Processing 604/854 atomic regions from SNP 181136 to 181736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,419 DEBUG Processing 504/1020 atomic regions from SNP 151138 to 151738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,532 DEBUG Processing 403/647 atomic regions from SNP 120649 to 121249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,538 DEBUG Processing 464/1132 atomic regions from SNP 139094 to 139694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,563 DEBUG Processing 33/235 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:11,680 DEBUG Processing 605/854 atomic regions from SNP 181436 to 182036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,684 DEBUG Processing 585/896 atomic regions from SNP 175314 to 175914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,719 DEBUG Processing 505/1020 atomic regions from SNP 151438 to 152038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,793 DEBUG Processing 404/647 atomic regions from SNP 120949 to 121549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,820 DEBUG Processing 34/235 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:11,843 DEBUG Processing 465/1132 atomic regions from SNP 139394 to 139994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,911 DEBUG Processing 606/854 atomic regions from SNP 181736 to 182336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,928 DEBUG Processing 586/896 atomic regions from SNP 175614 to 176214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,972 DEBUG Processing 506/1020 atomic regions from SNP 151738 to 152338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,026 DEBUG Processing 405/647 atomic regions from SNP 121249 to 121849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,043 DEBUG Processing 35/235 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:12,122 DEBUG Processing 466/1132 atomic regions from SNP 139694 to 140294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,142 DEBUG Processing 607/854 atomic regions from SNP 182036 to 182636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,151 DEBUG Processing 587/896 atomic regions from SNP 175914 to 176514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,226 DEBUG Processing 507/1020 atomic regions from SNP 152038 to 152638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,258 DEBUG Processing 406/647 atomic regions from SNP 121549 to 122149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,266 DEBUG Processing 36/235 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:12,369 DEBUG Processing 608/854 atomic regions from SNP 182336 to 182936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,376 DEBUG Processing 588/896 atomic regions from SNP 176214 to 176814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,406 DEBUG Processing 467/1132 atomic regions from SNP 139994 to 140594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,475 DEBUG Processing 508/1020 atomic regions from SNP 152338 to 152938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,485 DEBUG Processing 37/235 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:12,487 DEBUG Processing 407/647 atomic regions from SNP 121849 to 122449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,603 DEBUG Processing 609/854 atomic regions from SNP 182636 to 183236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,604 DEBUG Processing 589/896 atomic regions from SNP 176514 to 177114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,700 DEBUG Processing 468/1132 atomic regions from SNP 140294 to 140894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,709 DEBUG Processing 38/235 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:12,711 DEBUG Processing 408/647 atomic regions from SNP 122149 to 122749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,722 DEBUG Processing 509/1020 atomic regions from SNP 152638 to 153238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,841 DEBUG Processing 610/854 atomic regions from SNP 182936 to 183536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,846 DEBUG Processing 590/896 atomic regions from SNP 176814 to 177414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,932 DEBUG Processing 39/235 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:12,961 DEBUG Processing 409/647 atomic regions from SNP 122449 to 123049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,967 DEBUG Processing 469/1132 atomic regions from SNP 140594 to 141194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,981 DEBUG Processing 510/1020 atomic regions from SNP 152938 to 153538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,127 DEBUG Processing 611/854 atomic regions from SNP 183236 to 183836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,152 DEBUG Processing 591/896 atomic regions from SNP 177114 to 177714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,204 DEBUG Processing 40/235 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:13,254 DEBUG Processing 410/647 atomic regions from SNP 122749 to 123349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,276 DEBUG Processing 511/1020 atomic regions from SNP 153238 to 153838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,279 DEBUG Processing 470/1132 atomic regions from SNP 140894 to 141494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,482 DEBUG Processing 612/854 atomic regions from SNP 183536 to 184136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,520 DEBUG Processing 592/896 atomic regions from SNP 177414 to 178014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,563 DEBUG Processing 41/235 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:13,571 DEBUG Processing 411/647 atomic regions from SNP 123049 to 123649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,608 DEBUG Processing 512/1020 atomic regions from SNP 153538 to 154138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,620 DEBUG Processing 471/1132 atomic regions from SNP 141194 to 141794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,756 DEBUG Processing 613/854 atomic regions from SNP 183836 to 184436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,775 DEBUG Processing 593/896 atomic regions from SNP 177714 to 178314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,824 DEBUG Processing 42/235 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:13,848 DEBUG Processing 412/647 atomic regions from SNP 123349 to 123949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,926 DEBUG Processing 513/1020 atomic regions from SNP 153838 to 154438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,942 DEBUG Processing 472/1132 atomic regions from SNP 141494 to 142094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,020 DEBUG Processing 614/854 atomic regions from SNP 184136 to 184736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,058 DEBUG Processing 594/896 atomic regions from SNP 178014 to 178614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,063 DEBUG Processing 43/235 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:14,137 DEBUG Processing 413/647 atomic regions from SNP 123649 to 124249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,236 DEBUG Processing 514/1020 atomic regions from SNP 154138 to 154738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,260 DEBUG Processing 473/1132 atomic regions from SNP 141794 to 142394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,273 DEBUG Processing 615/854 atomic regions from SNP 184436 to 185036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,289 DEBUG Processing 44/235 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:14,318 DEBUG Processing 595/896 atomic regions from SNP 178314 to 178914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,381 DEBUG Processing 414/647 atomic regions from SNP 123949 to 124549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,521 DEBUG Processing 515/1020 atomic regions from SNP 154438 to 155038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,544 DEBUG Processing 616/854 atomic regions from SNP 184736 to 185336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,547 DEBUG Processing 45/235 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:14,557 DEBUG Processing 474/1132 atomic regions from SNP 142094 to 142694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,593 DEBUG Processing 596/896 atomic regions from SNP 178614 to 179214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,635 DEBUG Processing 415/647 atomic regions from SNP 124249 to 124849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,777 DEBUG Processing 46/235 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:14,787 DEBUG Processing 617/854 atomic regions from SNP 185036 to 185636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,798 DEBUG Processing 516/1020 atomic regions from SNP 154738 to 155338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,832 DEBUG Processing 475/1132 atomic regions from SNP 142394 to 142994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,853 DEBUG Processing 597/896 atomic regions from SNP 178914 to 179514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,902 DEBUG Processing 416/647 atomic regions from SNP 124549 to 125149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,995 DEBUG Processing 47/235 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:15,020 DEBUG Processing 618/854 atomic regions from SNP 185336 to 185936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,079 DEBUG Processing 517/1020 atomic regions from SNP 155038 to 155638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,101 DEBUG Processing 476/1132 atomic regions from SNP 142694 to 143294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,126 DEBUG Processing 598/896 atomic regions from SNP 179214 to 179814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,127 DEBUG Processing 417/647 atomic regions from SNP 124849 to 125449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,229 DEBUG Processing 48/235 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:15,245 DEBUG Processing 619/854 atomic regions from SNP 185636 to 186236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,396 DEBUG Processing 518/1020 atomic regions from SNP 155338 to 155938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,417 DEBUG Processing 477/1132 atomic regions from SNP 142994 to 143594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,441 DEBUG Processing 418/647 atomic regions from SNP 125149 to 125749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,465 DEBUG Processing 599/896 atomic regions from SNP 179514 to 180114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,536 DEBUG Processing 49/235 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:15,537 DEBUG Processing 620/854 atomic regions from SNP 185936 to 186536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,743 DEBUG Processing 519/1020 atomic regions from SNP 155638 to 156238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,746 DEBUG Processing 478/1132 atomic regions from SNP 143294 to 143894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,760 DEBUG Processing 419/647 atomic regions from SNP 125449 to 126049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,828 DEBUG Processing 600/896 atomic regions from SNP 179814 to 180414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,862 DEBUG Processing 621/854 atomic regions from SNP 186236 to 186836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,863 DEBUG Processing 50/235 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,101 DEBUG Processing 479/1132 atomic regions from SNP 143594 to 144194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,102 DEBUG Processing 420/647 atomic regions from SNP 125749 to 126349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,120 DEBUG Processing 520/1020 atomic regions from SNP 155938 to 156538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,169 DEBUG Processing 51/235 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,169 DEBUG Processing 622/854 atomic regions from SNP 186536 to 187136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,183 DEBUG Processing 601/896 atomic regions from SNP 180114 to 180714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,487 DEBUG Processing 421/647 atomic regions from SNP 126049 to 126649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,493 DEBUG Processing 480/1132 atomic regions from SNP 143894 to 144494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,516 DEBUG Processing 521/1020 atomic regions from SNP 156238 to 156838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,570 DEBUG Processing 52/235 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,591 DEBUG Processing 623/854 atomic regions from SNP 186836 to 187436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,616 DEBUG Processing 602/896 atomic regions from SNP 180414 to 181014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,793 DEBUG Processing 422/647 atomic regions from SNP 126349 to 126949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,809 DEBUG Processing 522/1020 atomic regions from SNP 156538 to 157138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,819 DEBUG Processing 53/235 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,820 DEBUG Processing 481/1132 atomic regions from SNP 144194 to 144794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,868 DEBUG Processing 624/854 atomic regions from SNP 187136 to 187736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,899 DEBUG Processing 603/896 atomic regions from SNP 180714 to 181314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,041 DEBUG Processing 54/235 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,055 DEBUG Processing 423/647 atomic regions from SNP 126649 to 127249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,089 DEBUG Processing 523/1020 atomic regions from SNP 156838 to 157438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,113 DEBUG Processing 482/1132 atomic regions from SNP 144494 to 145094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,138 DEBUG Processing 625/854 atomic regions from SNP 187436 to 188036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,167 DEBUG Processing 604/896 atomic regions from SNP 181014 to 181614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,258 DEBUG Processing 55/235 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,300 DEBUG Processing 424/647 atomic regions from SNP 126949 to 127549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,383 DEBUG Processing 524/1020 atomic regions from SNP 157138 to 157738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,389 DEBUG Processing 483/1132 atomic regions from SNP 144794 to 145394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,401 DEBUG Processing 626/854 atomic regions from SNP 187736 to 188336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,421 DEBUG Processing 605/896 atomic regions from SNP 181314 to 181914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,480 DEBUG Processing 56/235 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,537 DEBUG Processing 425/647 atomic regions from SNP 127249 to 127849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,650 DEBUG Processing 627/854 atomic regions from SNP 188036 to 188636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,652 DEBUG Processing 606/896 atomic regions from SNP 181614 to 182214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,661 DEBUG Processing 484/1132 atomic regions from SNP 145094 to 145694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,665 DEBUG Processing 525/1020 atomic regions from SNP 157438 to 158038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,704 DEBUG Processing 57/235 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,802 DEBUG Processing 426/647 atomic regions from SNP 127549 to 128149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,882 DEBUG Processing 607/896 atomic regions from SNP 181914 to 182514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,907 DEBUG Processing 628/854 atomic regions from SNP 188336 to 188936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,928 DEBUG Processing 58/235 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,934 DEBUG Processing 526/1020 atomic regions from SNP 157738 to 158338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,951 DEBUG Processing 485/1132 atomic regions from SNP 145394 to 145994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,052 DEBUG Processing 427/647 atomic regions from SNP 127849 to 128449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,106 DEBUG Processing 608/896 atomic regions from SNP 182214 to 182814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,145 DEBUG Processing 59/235 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:18,162 DEBUG Processing 629/854 atomic regions from SNP 188636 to 189236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,215 DEBUG Processing 527/1020 atomic regions from SNP 158038 to 158638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,249 DEBUG Processing 486/1132 atomic regions from SNP 145694 to 146294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,298 DEBUG Processing 428/647 atomic regions from SNP 128149 to 128749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,337 DEBUG Processing 609/896 atomic regions from SNP 182514 to 183114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,363 DEBUG Processing 60/235 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:18,418 DEBUG Processing 630/854 atomic regions from SNP 188936 to 189536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,476 DEBUG Processing 528/1020 atomic regions from SNP 158338 to 158938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,540 DEBUG Processing 487/1132 atomic regions from SNP 145994 to 146594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,544 DEBUG Processing 429/647 atomic regions from SNP 128449 to 129049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,562 DEBUG Processing 610/896 atomic regions from SNP 182814 to 183414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,577 DEBUG Processing 61/235 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:18,682 DEBUG Processing 631/854 atomic regions from SNP 189236 to 189836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,725 DEBUG Processing 529/1020 atomic regions from SNP 158638 to 159238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,795 DEBUG Processing 430/647 atomic regions from SNP 128749 to 129349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,796 DEBUG Processing 611/896 atomic regions from SNP 183114 to 183714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,798 DEBUG Processing 62/235 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:18,828 DEBUG Processing 488/1132 atomic regions from SNP 146294 to 146894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,946 DEBUG Processing 632/854 atomic regions from SNP 189536 to 190136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,974 DEBUG Processing 530/1020 atomic regions from SNP 158938 to 159538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,014 DEBUG Processing 63/235 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,019 DEBUG Processing 431/647 atomic regions from SNP 129049 to 129649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,024 DEBUG Processing 612/896 atomic regions from SNP 183414 to 184014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,092 DEBUG Processing 489/1132 atomic regions from SNP 146594 to 147194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,209 DEBUG Processing 633/854 atomic regions from SNP 189836 to 190436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,226 DEBUG Processing 531/1020 atomic regions from SNP 159238 to 159838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,230 DEBUG Processing 64/235 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,243 DEBUG Processing 432/647 atomic regions from SNP 129349 to 129949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,250 DEBUG Processing 613/896 atomic regions from SNP 183714 to 184314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,368 DEBUG Processing 490/1132 atomic regions from SNP 146894 to 147494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,447 DEBUG Processing 65/235 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,476 DEBUG Processing 614/896 atomic regions from SNP 184014 to 184614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,477 DEBUG Processing 634/854 atomic regions from SNP 190136 to 190736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,482 DEBUG Processing 532/1020 atomic regions from SNP 159538 to 160138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,488 DEBUG Processing 433/647 atomic regions from SNP 129649 to 130249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,654 DEBUG Processing 491/1132 atomic regions from SNP 147194 to 147794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,670 DEBUG Processing 66/235 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,707 DEBUG Processing 615/896 atomic regions from SNP 184314 to 184914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,722 DEBUG Processing 635/854 atomic regions from SNP 190436 to 191036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,740 DEBUG Processing 533/1020 atomic regions from SNP 159838 to 160438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,756 DEBUG Processing 434/647 atomic regions from SNP 129949 to 130549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,888 DEBUG Processing 67/235 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,930 DEBUG Processing 492/1132 atomic regions from SNP 147494 to 148094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,935 DEBUG Processing 616/896 atomic regions from SNP 184614 to 185214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,957 DEBUG Processing 636/854 atomic regions from SNP 190736 to 191336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,993 DEBUG Processing 534/1020 atomic regions from SNP 160138 to 160738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,010 DEBUG Processing 435/647 atomic regions from SNP 130249 to 130849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,108 DEBUG Processing 68/235 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,164 DEBUG Processing 617/896 atomic regions from SNP 184914 to 185514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,194 DEBUG Processing 637/854 atomic regions from SNP 191036 to 191636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,209 DEBUG Processing 493/1132 atomic regions from SNP 147794 to 148394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,247 DEBUG Processing 535/1020 atomic regions from SNP 160438 to 161038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,264 DEBUG Processing 436/647 atomic regions from SNP 130549 to 131149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,325 DEBUG Processing 69/235 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,386 DEBUG Processing 618/896 atomic regions from SNP 185214 to 185814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,419 DEBUG Processing 638/854 atomic regions from SNP 191336 to 191936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,494 DEBUG Processing 437/647 atomic regions from SNP 130849 to 131449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,501 DEBUG Processing 536/1020 atomic regions from SNP 160738 to 161338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,503 DEBUG Processing 494/1132 atomic regions from SNP 148094 to 148694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,546 DEBUG Processing 70/235 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,613 DEBUG Processing 619/896 atomic regions from SNP 185514 to 186114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,644 DEBUG Processing 639/854 atomic regions from SNP 191636 to 192236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,726 DEBUG Processing 438/647 atomic regions from SNP 131149 to 131749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,758 DEBUG Processing 537/1020 atomic regions from SNP 161038 to 161638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,765 DEBUG Processing 71/235 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,793 DEBUG Processing 495/1132 atomic regions from SNP 148394 to 148994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,842 DEBUG Processing 620/896 atomic regions from SNP 185814 to 186414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,872 DEBUG Processing 640/854 atomic regions from SNP 191936 to 192536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,954 DEBUG Processing 439/647 atomic regions from SNP 131449 to 132049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,981 DEBUG Processing 72/235 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,009 DEBUG Processing 538/1020 atomic regions from SNP 161338 to 161938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,068 DEBUG Processing 621/896 atomic regions from SNP 186114 to 186714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,069 DEBUG Processing 496/1132 atomic regions from SNP 148694 to 149294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,106 DEBUG Processing 641/854 atomic regions from SNP 192236 to 192836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,185 DEBUG Processing 440/647 atomic regions from SNP 131749 to 132349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,196 DEBUG Processing 73/235 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,256 DEBUG Processing 539/1020 atomic regions from SNP 161638 to 162238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,296 DEBUG Processing 622/896 atomic regions from SNP 186414 to 187014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,338 DEBUG Processing 642/854 atomic regions from SNP 192536 to 193136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,341 DEBUG Processing 497/1132 atomic regions from SNP 148994 to 149594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,413 DEBUG Processing 74/235 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,423 DEBUG Processing 441/647 atomic regions from SNP 132049 to 132649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,504 DEBUG Processing 540/1020 atomic regions from SNP 161938 to 162538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,521 DEBUG Processing 623/896 atomic regions from SNP 186714 to 187314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,575 DEBUG Processing 643/854 atomic regions from SNP 192836 to 193436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,626 DEBUG Processing 498/1132 atomic regions from SNP 149294 to 149894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,630 DEBUG Processing 75/235 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,659 DEBUG Processing 442/647 atomic regions from SNP 132349 to 132949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,748 DEBUG Processing 624/896 atomic regions from SNP 187014 to 187614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,754 DEBUG Processing 541/1020 atomic regions from SNP 162238 to 162838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,823 DEBUG Processing 644/854 atomic regions from SNP 193136 to 193736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,847 DEBUG Processing 76/235 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,911 DEBUG Processing 499/1132 atomic regions from SNP 149594 to 150194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,915 DEBUG Processing 443/647 atomic regions from SNP 132649 to 133249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,979 DEBUG Processing 625/896 atomic regions from SNP 187314 to 187914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,005 DEBUG Processing 542/1020 atomic regions from SNP 162538 to 163138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,065 DEBUG Processing 77/235 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,071 DEBUG Processing 645/854 atomic regions from SNP 193436 to 194036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,179 DEBUG Processing 444/647 atomic regions from SNP 132949 to 133549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,182 DEBUG Processing 500/1132 atomic regions from SNP 149894 to 150494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,208 DEBUG Processing 626/896 atomic regions from SNP 187614 to 188214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,262 DEBUG Processing 543/1020 atomic regions from SNP 162838 to 163438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,285 DEBUG Processing 78/235 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,298 DEBUG Processing 646/854 atomic regions from SNP 193736 to 194336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,427 DEBUG Processing 445/647 atomic regions from SNP 133249 to 133849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,437 DEBUG Processing 627/896 atomic regions from SNP 187914 to 188514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,441 DEBUG Processing 501/1132 atomic regions from SNP 150194 to 150794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,506 DEBUG Processing 79/235 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,522 DEBUG Processing 544/1020 atomic regions from SNP 163138 to 163738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,531 DEBUG Processing 647/854 atomic regions from SNP 194036 to 194636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,655 DEBUG Processing 446/647 atomic regions from SNP 133549 to 134149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,661 DEBUG Processing 628/896 atomic regions from SNP 188214 to 188814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,696 DEBUG Processing 502/1132 atomic regions from SNP 150494 to 151094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,720 DEBUG Processing 80/235 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,766 DEBUG Processing 648/854 atomic regions from SNP 194336 to 194936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,782 DEBUG Processing 545/1020 atomic regions from SNP 163438 to 164038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,875 DEBUG Processing 447/647 atomic regions from SNP 133849 to 134449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,891 DEBUG Processing 629/896 atomic regions from SNP 188514 to 189114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,951 DEBUG Processing 81/235 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,954 DEBUG Processing 503/1132 atomic regions from SNP 150794 to 151394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,001 DEBUG Processing 649/854 atomic regions from SNP 194636 to 195236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,041 DEBUG Processing 546/1020 atomic regions from SNP 163738 to 164338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,101 DEBUG Processing 448/647 atomic regions from SNP 134149 to 134749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,124 DEBUG Processing 630/896 atomic regions from SNP 188814 to 189414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,179 DEBUG Processing 82/235 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,212 DEBUG Processing 504/1132 atomic regions from SNP 151094 to 151694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,230 DEBUG Processing 650/854 atomic regions from SNP 194936 to 195536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,300 DEBUG Processing 547/1020 atomic regions from SNP 164038 to 164638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,331 DEBUG Processing 449/647 atomic regions from SNP 134449 to 135049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,361 DEBUG Processing 631/896 atomic regions from SNP 189114 to 189714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,398 DEBUG Processing 83/235 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,464 DEBUG Processing 651/854 atomic regions from SNP 195236 to 195836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,477 DEBUG Processing 505/1132 atomic regions from SNP 151394 to 151994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,563 DEBUG Processing 548/1020 atomic regions from SNP 164338 to 164938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,565 DEBUG Processing 450/647 atomic regions from SNP 134749 to 135349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,596 DEBUG Processing 632/896 atomic regions from SNP 189414 to 190014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,621 DEBUG Processing 84/235 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,721 DEBUG Processing 652/854 atomic regions from SNP 195536 to 196136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,749 DEBUG Processing 506/1132 atomic regions from SNP 151694 to 152294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,807 DEBUG Processing 451/647 atomic regions from SNP 135049 to 135649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,830 DEBUG Processing 549/1020 atomic regions from SNP 164638 to 165238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,833 DEBUG Processing 633/896 atomic regions from SNP 189714 to 190314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,844 DEBUG Processing 85/235 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,978 DEBUG Processing 653/854 atomic regions from SNP 195836 to 196436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,036 DEBUG Processing 507/1132 atomic regions from SNP 151994 to 152594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,076 DEBUG Processing 452/647 atomic regions from SNP 135349 to 135949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,089 DEBUG Processing 86/235 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,089 DEBUG Processing 634/896 atomic regions from SNP 190014 to 190614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,114 DEBUG Processing 550/1020 atomic regions from SNP 164938 to 165538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,229 DEBUG Processing 654/854 atomic regions from SNP 196136 to 196736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,326 DEBUG Processing 508/1132 atomic regions from SNP 152294 to 152894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,360 DEBUG Processing 453/647 atomic regions from SNP 135649 to 136249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,365 DEBUG Processing 87/235 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,378 DEBUG Processing 635/896 atomic regions from SNP 190314 to 190914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,406 DEBUG Processing 551/1020 atomic regions from SNP 165238 to 165838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,484 DEBUG Processing 655/854 atomic regions from SNP 196436 to 197036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,643 DEBUG Processing 454/647 atomic regions from SNP 135949 to 136549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,644 DEBUG Processing 509/1132 atomic regions from SNP 152594 to 153194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,645 DEBUG Processing 88/235 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,676 DEBUG Processing 636/896 atomic regions from SNP 190614 to 191214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,712 DEBUG Processing 552/1020 atomic regions from SNP 165538 to 166138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,756 DEBUG Processing 656/854 atomic regions from SNP 196736 to 197336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,932 DEBUG Processing 89/235 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,940 DEBUG Processing 455/647 atomic regions from SNP 136249 to 136849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,950 DEBUG Processing 637/896 atomic regions from SNP 190914 to 191514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,989 DEBUG Processing 510/1132 atomic regions from SNP 152894 to 153494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,998 DEBUG Processing 553/1020 atomic regions from SNP 165838 to 166438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,012 DEBUG Processing 657/854 atomic regions from SNP 197036 to 197636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,157 DEBUG Processing 90/235 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,180 DEBUG Processing 456/647 atomic regions from SNP 136549 to 137149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,184 DEBUG Processing 638/896 atomic regions from SNP 191214 to 191814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,256 DEBUG Processing 658/854 atomic regions from SNP 197336 to 197936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,268 DEBUG Processing 554/1020 atomic regions from SNP 166138 to 166738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,289 DEBUG Processing 511/1132 atomic regions from SNP 153194 to 153794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,379 DEBUG Processing 91/235 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,420 DEBUG Processing 639/896 atomic regions from SNP 191514 to 192114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,433 DEBUG Processing 457/647 atomic regions from SNP 136849 to 137449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,494 DEBUG Processing 659/854 atomic regions from SNP 197636 to 198236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,531 DEBUG Processing 555/1020 atomic regions from SNP 166438 to 167038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,575 DEBUG Processing 512/1132 atomic regions from SNP 153494 to 154094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,595 DEBUG Processing 92/235 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,651 DEBUG Processing 640/896 atomic regions from SNP 191814 to 192414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,672 DEBUG Processing 458/647 atomic regions from SNP 137149 to 137749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,726 DEBUG Processing 660/854 atomic regions from SNP 197936 to 198536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,786 DEBUG Processing 556/1020 atomic regions from SNP 166738 to 167338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,828 DEBUG Processing 93/235 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,844 DEBUG Processing 513/1132 atomic regions from SNP 153794 to 154394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,882 DEBUG Processing 641/896 atomic regions from SNP 192114 to 192714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,909 DEBUG Processing 459/647 atomic regions from SNP 137449 to 138049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,968 DEBUG Processing 661/854 atomic regions from SNP 198236 to 198836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,066 DEBUG Processing 557/1020 atomic regions from SNP 167038 to 167638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,085 DEBUG Processing 94/235 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,134 DEBUG Processing 514/1132 atomic regions from SNP 154094 to 154694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,179 DEBUG Processing 642/896 atomic regions from SNP 192414 to 193014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,179 DEBUG Processing 460/647 atomic regions from SNP 137749 to 138349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,212 DEBUG Processing 662/854 atomic regions from SNP 198536 to 199136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,302 DEBUG Processing 95/235 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,320 DEBUG Processing 558/1020 atomic regions from SNP 167338 to 167938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,392 DEBUG Processing 515/1132 atomic regions from SNP 154394 to 154994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,406 DEBUG Processing 461/647 atomic regions from SNP 138049 to 138649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,423 DEBUG Processing 643/896 atomic regions from SNP 192714 to 193314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,465 DEBUG Processing 663/854 atomic regions from SNP 198836 to 199436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,523 DEBUG Processing 96/235 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,572 DEBUG Processing 559/1020 atomic regions from SNP 167638 to 168238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,632 DEBUG Processing 462/647 atomic regions from SNP 138349 to 138949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,647 DEBUG Processing 644/896 atomic regions from SNP 193014 to 193614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,668 DEBUG Processing 516/1132 atomic regions from SNP 154694 to 155294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,693 DEBUG Processing 664/854 atomic regions from SNP 199136 to 199736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,737 DEBUG Processing 97/235 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,821 DEBUG Processing 560/1020 atomic regions from SNP 167938 to 168538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,880 DEBUG Processing 463/647 atomic regions from SNP 138649 to 139249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,886 DEBUG Processing 645/896 atomic regions from SNP 193314 to 193914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,947 DEBUG Processing 665/854 atomic regions from SNP 199436 to 200036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,952 DEBUG Processing 98/235 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,965 DEBUG Processing 517/1132 atomic regions from SNP 154994 to 155594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,074 DEBUG Processing 561/1020 atomic regions from SNP 168238 to 168838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,139 DEBUG Processing 464/647 atomic regions from SNP 138949 to 139549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,147 DEBUG Processing 646/896 atomic regions from SNP 193614 to 194214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,168 DEBUG Processing 99/235 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,210 DEBUG Processing 666/854 atomic regions from SNP 199736 to 200336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,265 DEBUG Processing 518/1132 atomic regions from SNP 155294 to 155894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,328 DEBUG Processing 562/1020 atomic regions from SNP 168538 to 169138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,384 DEBUG Processing 465/647 atomic regions from SNP 139249 to 139849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,384 DEBUG Processing 100/235 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,403 DEBUG Processing 647/896 atomic regions from SNP 193914 to 194514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,466 DEBUG Processing 667/854 atomic regions from SNP 200036 to 200636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,544 DEBUG Processing 519/1132 atomic regions from SNP 155594 to 156194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,588 DEBUG Processing 563/1020 atomic regions from SNP 168838 to 169438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,605 DEBUG Processing 101/235 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,638 DEBUG Processing 466/647 atomic regions from SNP 139549 to 140149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,660 DEBUG Processing 648/896 atomic regions from SNP 194214 to 194814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,690 DEBUG Processing 668/854 atomic regions from SNP 200336 to 200936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,819 DEBUG Processing 520/1132 atomic regions from SNP 155894 to 156494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,828 DEBUG Processing 102/235 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,846 DEBUG Processing 564/1020 atomic regions from SNP 169138 to 169738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,877 DEBUG Processing 467/647 atomic regions from SNP 139849 to 140449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,907 DEBUG Processing 649/896 atomic regions from SNP 194514 to 195114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,925 DEBUG Processing 669/854 atomic regions from SNP 200636 to 201236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,043 DEBUG Processing 103/235 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,099 DEBUG Processing 521/1132 atomic regions from SNP 156194 to 156794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,108 DEBUG Processing 565/1020 atomic regions from SNP 169438 to 170038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,131 DEBUG Processing 468/647 atomic regions from SNP 140149 to 140749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,138 DEBUG Processing 650/896 atomic regions from SNP 194814 to 195414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,184 DEBUG Processing 670/854 atomic regions from SNP 200936 to 201536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,251 DEBUG Processing 104/235 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,366 DEBUG Processing 651/896 atomic regions from SNP 195114 to 195714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,369 DEBUG Processing 566/1020 atomic regions from SNP 169738 to 170338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,369 DEBUG Processing 469/647 atomic regions from SNP 140449 to 141049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,392 DEBUG Processing 522/1132 atomic regions from SNP 156494 to 157094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,448 DEBUG Processing 671/854 atomic regions from SNP 201236 to 201836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,462 DEBUG Processing 105/235 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,588 DEBUG Processing 652/896 atomic regions from SNP 195414 to 196014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,602 DEBUG Processing 470/647 atomic regions from SNP 140749 to 141349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,628 DEBUG Processing 567/1020 atomic regions from SNP 170038 to 170638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,678 DEBUG Processing 106/235 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,678 DEBUG Processing 523/1132 atomic regions from SNP 156794 to 157394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,708 DEBUG Processing 672/854 atomic regions from SNP 201536 to 202136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,808 DEBUG Processing 653/896 atomic regions from SNP 195714 to 196314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,833 DEBUG Processing 471/647 atomic regions from SNP 141049 to 141649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,887 DEBUG Processing 568/1020 atomic regions from SNP 170338 to 170938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,903 DEBUG Processing 107/235 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,967 DEBUG Processing 524/1132 atomic regions from SNP 157094 to 157694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,969 DEBUG Processing 673/854 atomic regions from SNP 201836 to 202436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,034 DEBUG Processing 654/896 atomic regions from SNP 196014 to 196614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,073 DEBUG Processing 472/647 atomic regions from SNP 141349 to 141949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,115 DEBUG Processing 108/235 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,140 DEBUG Processing 569/1020 atomic regions from SNP 170638 to 171238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,226 DEBUG Processing 674/854 atomic regions from SNP 202136 to 202736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,254 DEBUG Processing 525/1132 atomic regions from SNP 157394 to 157994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,258 DEBUG Processing 655/896 atomic regions from SNP 196314 to 196914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,329 DEBUG Processing 473/647 atomic regions from SNP 141649 to 142249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,329 DEBUG Processing 109/235 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,392 DEBUG Processing 570/1020 atomic regions from SNP 170938 to 171538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,472 DEBUG Processing 675/854 atomic regions from SNP 202436 to 203036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,484 DEBUG Processing 656/896 atomic regions from SNP 196614 to 197214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,533 DEBUG Processing 526/1132 atomic regions from SNP 157694 to 158294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,541 DEBUG Processing 110/235 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,576 DEBUG Processing 474/647 atomic regions from SNP 141949 to 142549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,646 DEBUG Processing 571/1020 atomic regions from SNP 171238 to 171838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,708 DEBUG Processing 657/896 atomic regions from SNP 196914 to 197514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,722 DEBUG Processing 676/854 atomic regions from SNP 202736 to 203336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,750 DEBUG Processing 111/235 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,802 DEBUG Processing 475/647 atomic regions from SNP 142249 to 142849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,819 DEBUG Processing 527/1132 atomic regions from SNP 157994 to 158594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,896 DEBUG Processing 572/1020 atomic regions from SNP 171538 to 172138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,936 DEBUG Processing 658/896 atomic regions from SNP 197214 to 197814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,964 DEBUG Processing 112/235 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,977 DEBUG Processing 677/854 atomic regions from SNP 203036 to 203636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,028 DEBUG Processing 476/647 atomic regions from SNP 142549 to 143149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,098 DEBUG Processing 528/1132 atomic regions from SNP 158294 to 158894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,150 DEBUG Processing 573/1020 atomic regions from SNP 171838 to 172438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,169 DEBUG Processing 659/896 atomic regions from SNP 197514 to 198114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,181 DEBUG Processing 113/235 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,227 DEBUG Processing 678/854 atomic regions from SNP 203336 to 203936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,249 DEBUG Processing 477/647 atomic regions from SNP 142849 to 143449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,381 DEBUG Processing 529/1132 atomic regions from SNP 158594 to 159194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,398 DEBUG Processing 660/896 atomic regions from SNP 197814 to 198414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,400 DEBUG Processing 114/235 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,408 DEBUG Processing 574/1020 atomic regions from SNP 172138 to 172738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,472 DEBUG Processing 478/647 atomic regions from SNP 143149 to 143749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,478 DEBUG Processing 679/854 atomic regions from SNP 203636 to 204236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,614 DEBUG Processing 115/235 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,624 DEBUG Processing 661/896 atomic regions from SNP 198114 to 198714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,668 DEBUG Processing 575/1020 atomic regions from SNP 172438 to 173038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,669 DEBUG Processing 530/1132 atomic regions from SNP 158894 to 159494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,697 DEBUG Processing 479/647 atomic regions from SNP 143449 to 144049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,730 DEBUG Processing 680/854 atomic regions from SNP 203936 to 204536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,823 DEBUG Processing 116/235 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,846 DEBUG Processing 662/896 atomic regions from SNP 198414 to 199014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,925 DEBUG Processing 576/1020 atomic regions from SNP 172738 to 173338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,929 DEBUG Processing 480/647 atomic regions from SNP 143749 to 144349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,961 DEBUG Processing 531/1132 atomic regions from SNP 159194 to 159794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,991 DEBUG Processing 681/854 atomic regions from SNP 204236 to 204836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,035 DEBUG Processing 117/235 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,069 DEBUG Processing 663/896 atomic regions from SNP 198714 to 199314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,161 DEBUG Processing 481/647 atomic regions from SNP 144049 to 144649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,182 DEBUG Processing 577/1020 atomic regions from SNP 173038 to 173638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,250 DEBUG Processing 682/854 atomic regions from SNP 204536 to 205136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,252 DEBUG Processing 118/235 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,262 DEBUG Processing 532/1132 atomic regions from SNP 159494 to 160094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,295 DEBUG Processing 664/896 atomic regions from SNP 199014 to 199614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,385 DEBUG Processing 482/647 atomic regions from SNP 144349 to 144949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,432 DEBUG Processing 578/1020 atomic regions from SNP 173338 to 173938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,466 DEBUG Processing 119/235 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,505 DEBUG Processing 683/854 atomic regions from SNP 204836 to 205436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,522 DEBUG Processing 665/896 atomic regions from SNP 199314 to 199914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,558 DEBUG Processing 533/1132 atomic regions from SNP 159794 to 160394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,607 DEBUG Processing 483/647 atomic regions from SNP 144649 to 145249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,680 DEBUG Processing 120/235 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,684 DEBUG Processing 579/1020 atomic regions from SNP 173638 to 174238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,749 DEBUG Processing 666/896 atomic regions from SNP 199614 to 200214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,751 DEBUG Processing 684/854 atomic regions from SNP 205136 to 205736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,817 DEBUG Processing 534/1132 atomic regions from SNP 160094 to 160694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,833 DEBUG Processing 484/647 atomic regions from SNP 144949 to 145549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,890 DEBUG Processing 121/235 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,925 DEBUG Processing 580/1020 atomic regions from SNP 173938 to 174538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,973 DEBUG Processing 667/896 atomic regions from SNP 199914 to 200514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,989 DEBUG Processing 685/854 atomic regions from SNP 205436 to 206036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,068 DEBUG Processing 485/647 atomic regions from SNP 145249 to 145849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,088 DEBUG Processing 535/1132 atomic regions from SNP 160394 to 160994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,107 DEBUG Processing 122/235 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,184 DEBUG Processing 581/1020 atomic regions from SNP 174238 to 174838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,200 DEBUG Processing 668/896 atomic regions from SNP 200214 to 200814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,223 DEBUG Processing 686/854 atomic regions from SNP 205736 to 206336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,297 DEBUG Processing 486/647 atomic regions from SNP 145549 to 146149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,323 DEBUG Processing 123/235 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,352 DEBUG Processing 536/1132 atomic regions from SNP 160694 to 161294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,423 DEBUG Processing 669/896 atomic regions from SNP 200514 to 201114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,430 DEBUG Processing 582/1020 atomic regions from SNP 174538 to 175138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,471 DEBUG Processing 687/854 atomic regions from SNP 206036 to 206636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,522 DEBUG Processing 487/647 atomic regions from SNP 145849 to 146449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,542 DEBUG Processing 124/235 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,616 DEBUG Processing 537/1132 atomic regions from SNP 160994 to 161594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,647 DEBUG Processing 670/896 atomic regions from SNP 200814 to 201414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,681 DEBUG Processing 583/1020 atomic regions from SNP 174838 to 175438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,736 DEBUG Processing 688/854 atomic regions from SNP 206336 to 206936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,748 DEBUG Processing 488/647 atomic regions from SNP 146149 to 146749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,785 DEBUG Processing 125/235 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,870 DEBUG Processing 671/896 atomic regions from SNP 201114 to 201714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,875 DEBUG Processing 538/1132 atomic regions from SNP 161294 to 161894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,927 DEBUG Processing 584/1020 atomic regions from SNP 175138 to 175738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,982 DEBUG Processing 689/854 atomic regions from SNP 206636 to 207236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,984 DEBUG Processing 489/647 atomic regions from SNP 146449 to 147049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,008 DEBUG Processing 126/235 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,095 DEBUG Processing 672/896 atomic regions from SNP 201414 to 202014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,135 DEBUG Processing 539/1132 atomic regions from SNP 161594 to 162194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,178 DEBUG Processing 585/1020 atomic regions from SNP 175438 to 176038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,219 DEBUG Processing 127/235 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,232 DEBUG Processing 490/647 atomic regions from SNP 146749 to 147349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,237 DEBUG Processing 690/854 atomic regions from SNP 206936 to 207536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,324 DEBUG Processing 673/896 atomic regions from SNP 201714 to 202314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,391 DEBUG Processing 540/1132 atomic regions from SNP 161894 to 162494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,423 DEBUG Processing 586/1020 atomic regions from SNP 175738 to 176338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,429 DEBUG Processing 128/235 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,480 DEBUG Processing 691/854 atomic regions from SNP 207236 to 207836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,485 DEBUG Processing 491/647 atomic regions from SNP 147049 to 147649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,570 DEBUG Processing 674/896 atomic regions from SNP 202014 to 202614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,641 DEBUG Processing 129/235 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,648 DEBUG Processing 541/1132 atomic regions from SNP 162194 to 162794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,669 DEBUG Processing 587/1020 atomic regions from SNP 176038 to 176638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,721 DEBUG Processing 692/854 atomic regions from SNP 207536 to 208136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,745 DEBUG Processing 492/647 atomic regions from SNP 147349 to 147949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,824 DEBUG Processing 675/896 atomic regions from SNP 202314 to 202914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,858 DEBUG Processing 130/235 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,901 DEBUG Processing 542/1132 atomic regions from SNP 162494 to 163094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,913 DEBUG Processing 588/1020 atomic regions from SNP 176338 to 176938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,949 DEBUG Processing 693/854 atomic regions from SNP 207836 to 208436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,994 DEBUG Processing 493/647 atomic regions from SNP 147649 to 148249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,053 DEBUG Processing 676/896 atomic regions from SNP 202614 to 203214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,074 DEBUG Processing 131/235 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,158 DEBUG Processing 543/1132 atomic regions from SNP 162794 to 163394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,165 DEBUG Processing 589/1020 atomic regions from SNP 176638 to 177238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,178 DEBUG Processing 694/854 atomic regions from SNP 208136 to 208736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,250 DEBUG Processing 494/647 atomic regions from SNP 147949 to 148549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,280 DEBUG Processing 677/896 atomic regions from SNP 202914 to 203514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,288 DEBUG Processing 132/235 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,415 DEBUG Processing 544/1132 atomic regions from SNP 163094 to 163694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,429 DEBUG Processing 695/854 atomic regions from SNP 208436 to 209036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,437 DEBUG Processing 590/1020 atomic regions from SNP 176938 to 177538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,497 DEBUG Processing 495/647 atomic regions from SNP 148249 to 148849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,504 DEBUG Processing 133/235 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,515 DEBUG Processing 678/896 atomic regions from SNP 203214 to 203814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,674 DEBUG Processing 545/1132 atomic regions from SNP 163394 to 163994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,691 DEBUG Processing 696/854 atomic regions from SNP 208736 to 209336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,709 DEBUG Processing 591/1020 atomic regions from SNP 177238 to 177838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,722 DEBUG Processing 134/235 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,728 DEBUG Processing 496/647 atomic regions from SNP 148549 to 149149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,744 DEBUG Processing 679/896 atomic regions from SNP 203514 to 204114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,930 DEBUG Processing 697/854 atomic regions from SNP 209036 to 209636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,940 DEBUG Processing 546/1132 atomic regions from SNP 163694 to 164294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,944 DEBUG Processing 135/235 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,966 DEBUG Processing 497/647 atomic regions from SNP 148849 to 149449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,984 DEBUG Processing 592/1020 atomic regions from SNP 177538 to 178138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,990 DEBUG Processing 680/896 atomic regions from SNP 203814 to 204414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,164 DEBUG Processing 698/854 atomic regions from SNP 209336 to 209936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,164 DEBUG Processing 136/235 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:35,211 DEBUG Processing 498/647 atomic regions from SNP 149149 to 149749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,211 DEBUG Processing 547/1132 atomic regions from SNP 163994 to 164594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,245 DEBUG Processing 681/896 atomic regions from SNP 204114 to 204714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,252 DEBUG Processing 593/1020 atomic regions from SNP 177838 to 178438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,382 DEBUG Processing 137/235 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:35,397 DEBUG Processing 699/854 atomic regions from SNP 209636 to 210236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,455 DEBUG Processing 499/647 atomic regions from SNP 149449 to 150049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,477 DEBUG Processing 548/1132 atomic regions from SNP 164294 to 164894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,480 DEBUG Processing 682/896 atomic regions from SNP 204414 to 205014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,504 DEBUG Processing 594/1020 atomic regions from SNP 178138 to 178738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,596 DEBUG Processing 138/235 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:35,626 DEBUG Processing 700/854 atomic regions from SNP 209936 to 210536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,700 DEBUG Processing 500/647 atomic regions from SNP 149749 to 150349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,706 DEBUG Processing 683/896 atomic regions from SNP 204714 to 205314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,738 DEBUG Processing 549/1132 atomic regions from SNP 164594 to 165194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,753 DEBUG Processing 595/1020 atomic regions from SNP 178438 to 179038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,803 DEBUG Processing 139/235 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:35,845 DEBUG Processing 701/854 atomic regions from SNP 210236 to 210836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,936 DEBUG Processing 501/647 atomic regions from SNP 150049 to 150649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,936 DEBUG Processing 684/896 atomic regions from SNP 205014 to 205614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,002 DEBUG Processing 550/1132 atomic regions from SNP 164894 to 165494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,007 DEBUG Processing 596/1020 atomic regions from SNP 178738 to 179338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,016 DEBUG Processing 140/235 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:36,065 DEBUG Processing 702/854 atomic regions from SNP 210536 to 211136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,164 DEBUG Processing 502/647 atomic regions from SNP 150349 to 150949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,170 DEBUG Processing 685/896 atomic regions from SNP 205314 to 205914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,241 DEBUG Processing 141/235 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:36,269 DEBUG Processing 597/1020 atomic regions from SNP 179038 to 179638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,273 DEBUG Processing 551/1132 atomic regions from SNP 165194 to 165794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,298 DEBUG Processing 703/854 atomic regions from SNP 210836 to 211436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,383 DEBUG Processing 503/647 atomic regions from SNP 150649 to 151249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,395 DEBUG Processing 686/896 atomic regions from SNP 205614 to 206214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,460 DEBUG Processing 142/235 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:36,530 DEBUG Processing 598/1020 atomic regions from SNP 179338 to 179938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,533 DEBUG Processing 704/854 atomic regions from SNP 211136 to 211736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,545 DEBUG Processing 552/1132 atomic regions from SNP 165494 to 166094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,602 DEBUG Processing 504/647 atomic regions from SNP 150949 to 151549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,628 DEBUG Processing 687/896 atomic regions from SNP 205914 to 206514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,674 DEBUG Processing 143/235 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:36,781 DEBUG Processing 705/854 atomic regions from SNP 211436 to 212036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,802 DEBUG Processing 599/1020 atomic regions from SNP 179638 to 180238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,825 DEBUG Processing 553/1132 atomic regions from SNP 165794 to 166394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,838 DEBUG Processing 505/647 atomic regions from SNP 151249 to 151849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,875 DEBUG Processing 688/896 atomic regions from SNP 206214 to 206814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,893 DEBUG Processing 144/235 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:37,017 DEBUG Processing 706/854 atomic regions from SNP 211736 to 212336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,066 DEBUG Processing 600/1020 atomic regions from SNP 179938 to 180538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,071 DEBUG Processing 506/647 atomic regions from SNP 151549 to 152149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,108 DEBUG Processing 554/1132 atomic regions from SNP 166094 to 166694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,112 DEBUG Processing 145/235 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:37,115 DEBUG Processing 689/896 atomic regions from SNP 206514 to 207114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,239 DEBUG Processing 707/854 atomic regions from SNP 212036 to 212636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,321 DEBUG Processing 601/1020 atomic regions from SNP 180238 to 180838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,326 DEBUG Processing 507/647 atomic regions from SNP 151849 to 152449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,338 DEBUG Processing 146/235 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:37,351 DEBUG Processing 690/896 atomic regions from SNP 206814 to 207414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,374 DEBUG Processing 555/1132 atomic regions from SNP 166394 to 166994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,457 DEBUG Processing 708/854 atomic regions from SNP 212336 to 212936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,558 DEBUG Processing 147/235 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:37,571 DEBUG Processing 602/1020 atomic regions from SNP 180538 to 181138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,577 DEBUG Processing 508/647 atomic regions from SNP 152149 to 152749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,588 DEBUG Processing 691/896 atomic regions from SNP 207114 to 207714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,641 DEBUG Processing 556/1132 atomic regions from SNP 166694 to 167294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,681 DEBUG Processing 709/854 atomic regions from SNP 212636 to 213236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,768 DEBUG Processing 148/235 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:37,815 DEBUG Processing 603/1020 atomic regions from SNP 180838 to 181438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,818 DEBUG Processing 692/896 atomic regions from SNP 207414 to 208014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,825 DEBUG Processing 509/647 atomic regions from SNP 152449 to 153049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,910 DEBUG Processing 557/1132 atomic regions from SNP 166994 to 167594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,912 DEBUG Processing 710/854 atomic regions from SNP 212936 to 213536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,978 DEBUG Processing 149/235 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:38,039 DEBUG Processing 693/896 atomic regions from SNP 207714 to 208314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,054 DEBUG Processing 604/1020 atomic regions from SNP 181138 to 181738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,079 DEBUG Processing 510/647 atomic regions from SNP 152749 to 153349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,149 DEBUG Processing 711/854 atomic regions from SNP 213236 to 213836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,179 DEBUG Processing 558/1132 atomic regions from SNP 167294 to 167894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,195 DEBUG Processing 150/235 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:38,263 DEBUG Processing 694/896 atomic regions from SNP 208014 to 208614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,294 DEBUG Processing 605/1020 atomic regions from SNP 181438 to 182038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,337 DEBUG Processing 511/647 atomic regions from SNP 153049 to 153649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,380 DEBUG Processing 712/854 atomic regions from SNP 213536 to 214136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,412 DEBUG Processing 151/235 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:38,447 DEBUG Processing 559/1132 atomic regions from SNP 167594 to 168194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,492 DEBUG Processing 695/896 atomic regions from SNP 208314 to 208914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,538 DEBUG Processing 606/1020 atomic regions from SNP 181738 to 182338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,594 DEBUG Processing 512/647 atomic regions from SNP 153349 to 153949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,610 DEBUG Processing 713/854 atomic regions from SNP 213836 to 214436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,628 DEBUG Processing 152/235 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:38,706 DEBUG Processing 560/1132 atomic regions from SNP 167894 to 168494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,720 DEBUG Processing 696/896 atomic regions from SNP 208614 to 209214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,781 DEBUG Processing 607/1020 atomic regions from SNP 182038 to 182638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,829 DEBUG Processing 513/647 atomic regions from SNP 153649 to 154249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,839 DEBUG Processing 714/854 atomic regions from SNP 214136 to 214736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,844 DEBUG Processing 153/235 atomic regions from SNP 45752 to 46353 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:38,948 DEBUG Processing 697/896 atomic regions from SNP 208914 to 209514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,961 DEBUG Processing 561/1132 atomic regions from SNP 168194 to 168794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,036 DEBUG Processing 608/1020 atomic regions from SNP 182338 to 182938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,067 DEBUG Processing 715/854 atomic regions from SNP 214436 to 215036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,071 DEBUG Processing 154/235 atomic regions from SNP 46053 to 46654 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:39,075 DEBUG Processing 514/647 atomic regions from SNP 153949 to 154549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,175 DEBUG Processing 698/896 atomic regions from SNP 209214 to 209814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,214 DEBUG Processing 562/1132 atomic regions from SNP 168494 to 169094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,287 DEBUG Processing 155/235 atomic regions from SNP 46354 to 46955 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:39,293 DEBUG Processing 609/1020 atomic regions from SNP 182638 to 183238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,296 DEBUG Processing 716/854 atomic regions from SNP 214736 to 215336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,331 DEBUG Processing 515/647 atomic regions from SNP 154249 to 154849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,403 DEBUG Processing 699/896 atomic regions from SNP 209514 to 210114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,469 DEBUG Processing 563/1132 atomic regions from SNP 168794 to 169394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,505 DEBUG Processing 156/235 atomic regions from SNP 46655 to 47256 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:39,541 DEBUG Processing 717/854 atomic regions from SNP 215036 to 215636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,556 DEBUG Processing 610/1020 atomic regions from SNP 182938 to 183538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,591 DEBUG Processing 516/647 atomic regions from SNP 154549 to 155149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,631 DEBUG Processing 700/896 atomic regions from SNP 209814 to 210414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,721 DEBUG Processing 157/235 atomic regions from SNP 46956 to 47557 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:39,726 DEBUG Processing 564/1132 atomic regions from SNP 169094 to 169694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,807 DEBUG Processing 718/854 atomic regions from SNP 215336 to 215936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,817 DEBUG Processing 611/1020 atomic regions from SNP 183238 to 183838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,853 DEBUG Processing 517/647 atomic regions from SNP 154849 to 155449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,860 DEBUG Processing 701/896 atomic regions from SNP 210114 to 210714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,933 DEBUG Processing 158/235 atomic regions from SNP 47257 to 47858 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:39,979 DEBUG Processing 565/1132 atomic regions from SNP 169394 to 169994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,037 DEBUG Processing 719/854 atomic regions from SNP 215636 to 216236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,073 DEBUG Processing 612/1020 atomic regions from SNP 183538 to 184138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,088 DEBUG Processing 702/896 atomic regions from SNP 210414 to 211014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,116 DEBUG Processing 518/647 atomic regions from SNP 155149 to 155749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,148 DEBUG Processing 159/235 atomic regions from SNP 47558 to 48159 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:40,239 DEBUG Processing 566/1132 atomic regions from SNP 169694 to 170294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,266 DEBUG Processing 720/854 atomic regions from SNP 215936 to 216536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,315 DEBUG Processing 703/896 atomic regions from SNP 210714 to 211314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,326 DEBUG Processing 613/1020 atomic regions from SNP 183838 to 184438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,362 DEBUG Processing 160/235 atomic regions from SNP 47859 to 48460 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:40,374 DEBUG Processing 519/647 atomic regions from SNP 155449 to 156049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,490 DEBUG Processing 721/854 atomic regions from SNP 216236 to 216836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,498 DEBUG Processing 567/1132 atomic regions from SNP 169994 to 170594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,541 DEBUG Processing 704/896 atomic regions from SNP 211014 to 211614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,574 DEBUG Processing 161/235 atomic regions from SNP 48160 to 48761 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:40,578 DEBUG Processing 614/1020 atomic regions from SNP 184138 to 184738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,632 DEBUG Processing 520/647 atomic regions from SNP 155749 to 156349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,739 DEBUG Processing 722/854 atomic regions from SNP 216536 to 217136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,757 DEBUG Processing 568/1132 atomic regions from SNP 170294 to 170894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,769 DEBUG Processing 705/896 atomic regions from SNP 211314 to 211914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,789 DEBUG Processing 162/235 atomic regions from SNP 48461 to 49062 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:40,827 DEBUG Processing 615/1020 atomic regions from SNP 184438 to 185038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,876 DEBUG Processing 521/647 atomic regions from SNP 156049 to 156649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,995 DEBUG Processing 723/854 atomic regions from SNP 216836 to 217436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,999 DEBUG Processing 706/896 atomic regions from SNP 211614 to 212214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,005 DEBUG Processing 163/235 atomic regions from SNP 48762 to 49363 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:41,012 DEBUG Processing 569/1132 atomic regions from SNP 170594 to 171194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,069 DEBUG Processing 616/1020 atomic regions from SNP 184738 to 185338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,126 DEBUG Processing 522/647 atomic regions from SNP 156349 to 156949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,225 DEBUG Processing 164/235 atomic regions from SNP 49063 to 49664 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:41,228 DEBUG Processing 707/896 atomic regions from SNP 211914 to 212514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,254 DEBUG Processing 724/854 atomic regions from SNP 217136 to 217736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,270 DEBUG Processing 570/1132 atomic regions from SNP 170894 to 171494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,313 DEBUG Processing 617/1020 atomic regions from SNP 185038 to 185638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,376 DEBUG Processing 523/647 atomic regions from SNP 156649 to 157249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,448 DEBUG Processing 165/235 atomic regions from SNP 49364 to 49965 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:41,464 DEBUG Processing 708/896 atomic regions from SNP 212214 to 212814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,512 DEBUG Processing 725/854 atomic regions from SNP 217436 to 218036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,537 DEBUG Processing 571/1132 atomic regions from SNP 171194 to 171794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,564 DEBUG Processing 618/1020 atomic regions from SNP 185338 to 185938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,634 DEBUG Processing 524/647 atomic regions from SNP 156949 to 157549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,666 DEBUG Processing 166/235 atomic regions from SNP 49665 to 50266 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:41,698 DEBUG Processing 709/896 atomic regions from SNP 212514 to 213114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,749 DEBUG Processing 726/854 atomic regions from SNP 217736 to 218336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,798 DEBUG Processing 572/1132 atomic regions from SNP 171494 to 172094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,816 DEBUG Processing 619/1020 atomic regions from SNP 185638 to 186238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,878 DEBUG Processing 167/235 atomic regions from SNP 49966 to 50567 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:41,892 DEBUG Processing 525/647 atomic regions from SNP 157249 to 157849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,928 DEBUG Processing 710/896 atomic regions from SNP 212814 to 213414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,980 DEBUG Processing 727/854 atomic regions from SNP 218036 to 218636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,062 DEBUG Processing 573/1132 atomic regions from SNP 171794 to 172394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,069 DEBUG Processing 620/1020 atomic regions from SNP 185938 to 186538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,089 DEBUG Processing 168/235 atomic regions from SNP 50267 to 50868 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,154 DEBUG Processing 526/647 atomic regions from SNP 157549 to 158149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,178 DEBUG Processing 711/896 atomic regions from SNP 213114 to 213714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,211 DEBUG Processing 728/854 atomic regions from SNP 218336 to 218936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,303 DEBUG Processing 169/235 atomic regions from SNP 50568 to 51169 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,322 DEBUG Processing 621/1020 atomic regions from SNP 186238 to 186838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,323 DEBUG Processing 574/1132 atomic regions from SNP 172094 to 172694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,415 DEBUG Processing 527/647 atomic regions from SNP 157849 to 158449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,438 DEBUG Processing 729/854 atomic regions from SNP 218636 to 219236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,439 DEBUG Processing 712/896 atomic regions from SNP 213414 to 214014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,520 DEBUG Processing 170/235 atomic regions from SNP 50869 to 51470 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,576 DEBUG Processing 622/1020 atomic regions from SNP 186538 to 187138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,588 DEBUG Processing 575/1132 atomic regions from SNP 172394 to 172994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,669 DEBUG Processing 528/647 atomic regions from SNP 158149 to 158749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,670 DEBUG Processing 730/854 atomic regions from SNP 218936 to 219536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,704 DEBUG Processing 713/896 atomic regions from SNP 213714 to 214314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,734 DEBUG Processing 171/235 atomic regions from SNP 51170 to 51771 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,840 DEBUG Processing 623/1020 atomic regions from SNP 186838 to 187438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,860 DEBUG Processing 576/1132 atomic regions from SNP 172694 to 173294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,905 DEBUG Processing 731/854 atomic regions from SNP 219236 to 219836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,924 DEBUG Processing 529/647 atomic regions from SNP 158449 to 159049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,952 DEBUG Processing 172/235 atomic regions from SNP 51471 to 52072 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,959 DEBUG Processing 714/896 atomic regions from SNP 214014 to 214614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,097 DEBUG Processing 624/1020 atomic regions from SNP 187138 to 187738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,132 DEBUG Processing 577/1132 atomic regions from SNP 172994 to 173594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,144 DEBUG Processing 732/854 atomic regions from SNP 219536 to 220136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,169 DEBUG Processing 173/235 atomic regions from SNP 51772 to 52373 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:43,186 DEBUG Processing 530/647 atomic regions from SNP 158749 to 159349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,218 DEBUG Processing 715/896 atomic regions from SNP 214314 to 214914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,355 DEBUG Processing 625/1020 atomic regions from SNP 187438 to 188038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,384 DEBUG Processing 733/854 atomic regions from SNP 219836 to 220436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,401 DEBUG Processing 578/1132 atomic regions from SNP 173294 to 173894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,412 DEBUG Processing 174/235 atomic regions from SNP 52073 to 52674 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:43,449 DEBUG Processing 531/647 atomic regions from SNP 159049 to 159649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,452 DEBUG Processing 716/896 atomic regions from SNP 214614 to 215214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,608 DEBUG Processing 626/1020 atomic regions from SNP 187738 to 188338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,621 DEBUG Processing 734/854 atomic regions from SNP 220136 to 220736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,661 DEBUG Processing 175/235 atomic regions from SNP 52374 to 52975 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:43,670 DEBUG Processing 579/1132 atomic regions from SNP 173594 to 174194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,678 DEBUG Processing 717/896 atomic regions from SNP 214914 to 215514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,706 DEBUG Processing 532/647 atomic regions from SNP 159349 to 159949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,853 DEBUG Processing 735/854 atomic regions from SNP 220436 to 221036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,859 DEBUG Processing 627/1020 atomic regions from SNP 188038 to 188638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,885 DEBUG Processing 176/235 atomic regions from SNP 52675 to 53276 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:43,907 DEBUG Processing 718/896 atomic regions from SNP 215214 to 215814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,935 DEBUG Processing 580/1132 atomic regions from SNP 173894 to 174494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,963 DEBUG Processing 533/647 atomic regions from SNP 159649 to 160249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,079 DEBUG Processing 736/854 atomic regions from SNP 220736 to 221336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,101 DEBUG Processing 177/235 atomic regions from SNP 52976 to 53577 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:44,104 DEBUG Processing 628/1020 atomic regions from SNP 188338 to 188938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,138 DEBUG Processing 719/896 atomic regions from SNP 215514 to 216114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,203 DEBUG Processing 581/1132 atomic regions from SNP 174194 to 174794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,225 DEBUG Processing 534/647 atomic regions from SNP 159949 to 160549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,303 DEBUG Processing 737/854 atomic regions from SNP 221036 to 221636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,316 DEBUG Processing 178/235 atomic regions from SNP 53277 to 53878 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:44,350 DEBUG Processing 629/1020 atomic regions from SNP 188638 to 189238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,364 DEBUG Processing 720/896 atomic regions from SNP 215814 to 216414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,471 DEBUG Processing 582/1132 atomic regions from SNP 174494 to 175094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,490 DEBUG Processing 535/647 atomic regions from SNP 160249 to 160849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,533 DEBUG Processing 179/235 atomic regions from SNP 53578 to 54179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:44,535 DEBUG Processing 738/854 atomic regions from SNP 221336 to 221936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,590 DEBUG Processing 721/896 atomic regions from SNP 216114 to 216714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,596 DEBUG Processing 630/1020 atomic regions from SNP 188938 to 189538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,741 DEBUG Processing 583/1132 atomic regions from SNP 174794 to 175394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,752 DEBUG Processing 536/647 atomic regions from SNP 160549 to 161149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,754 DEBUG Processing 180/235 atomic regions from SNP 53879 to 54480 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:44,774 DEBUG Processing 739/854 atomic regions from SNP 221636 to 222236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,818 DEBUG Processing 722/896 atomic regions from SNP 216414 to 217014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,844 DEBUG Processing 631/1020 atomic regions from SNP 189238 to 189838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,977 DEBUG Processing 181/235 atomic regions from SNP 54180 to 54781 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:44,986 DEBUG Processing 537/647 atomic regions from SNP 160849 to 161449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,011 DEBUG Processing 584/1132 atomic regions from SNP 175094 to 175694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,014 DEBUG Processing 740/854 atomic regions from SNP 221936 to 222536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,048 DEBUG Processing 723/896 atomic regions from SNP 216714 to 217314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,093 DEBUG Processing 632/1020 atomic regions from SNP 189538 to 190138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,193 DEBUG Processing 182/235 atomic regions from SNP 54481 to 55082 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:45,211 DEBUG Processing 538/647 atomic regions from SNP 161149 to 161749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,248 DEBUG Processing 741/854 atomic regions from SNP 222236 to 222836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,275 DEBUG Processing 585/1132 atomic regions from SNP 175394 to 175994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,284 DEBUG Processing 724/896 atomic regions from SNP 217014 to 217614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,343 DEBUG Processing 633/1020 atomic regions from SNP 189838 to 190438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,408 DEBUG Processing 183/235 atomic regions from SNP 54782 to 55383 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:45,440 DEBUG Processing 539/647 atomic regions from SNP 161449 to 162049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,477 DEBUG Processing 742/854 atomic regions from SNP 222536 to 223136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,538 DEBUG Processing 586/1132 atomic regions from SNP 175694 to 176294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,546 DEBUG Processing 725/896 atomic regions from SNP 217314 to 217914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,596 DEBUG Processing 634/1020 atomic regions from SNP 190138 to 190738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,619 DEBUG Processing 184/235 atomic regions from SNP 55083 to 55684 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:45,674 DEBUG Processing 540/647 atomic regions from SNP 161749 to 162349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,703 DEBUG Processing 743/854 atomic regions from SNP 222836 to 223436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,799 DEBUG Processing 587/1132 atomic regions from SNP 175994 to 176594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,801 DEBUG Processing 726/896 atomic regions from SNP 217614 to 218214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,839 DEBUG Processing 185/235 atomic regions from SNP 55384 to 55985 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:45,848 DEBUG Processing 635/1020 atomic regions from SNP 190438 to 191038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,899 DEBUG Processing 541/647 atomic regions from SNP 162049 to 162649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,929 DEBUG Processing 744/854 atomic regions from SNP 223136 to 223736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,063 DEBUG Processing 186/235 atomic regions from SNP 55685 to 56286 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:46,063 DEBUG Processing 727/896 atomic regions from SNP 217914 to 218514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,065 DEBUG Processing 588/1132 atomic regions from SNP 176294 to 176894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,103 DEBUG Processing 636/1020 atomic regions from SNP 190738 to 191338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,139 DEBUG Processing 542/647 atomic regions from SNP 162349 to 162949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,158 DEBUG Processing 745/854 atomic regions from SNP 223436 to 224036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,290 DEBUG Processing 187/235 atomic regions from SNP 55986 to 56587 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:46,313 DEBUG Processing 728/896 atomic regions from SNP 218214 to 218814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,326 DEBUG Processing 589/1132 atomic regions from SNP 176594 to 177194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,355 DEBUG Processing 637/1020 atomic regions from SNP 191038 to 191638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,389 DEBUG Processing 543/647 atomic regions from SNP 162649 to 163249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,393 DEBUG Processing 746/854 atomic regions from SNP 223736 to 224336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,509 DEBUG Processing 188/235 atomic regions from SNP 56287 to 56888 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:46,545 DEBUG Processing 729/896 atomic regions from SNP 218514 to 219114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,586 DEBUG Processing 590/1132 atomic regions from SNP 176894 to 177494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,608 DEBUG Processing 638/1020 atomic regions from SNP 191338 to 191938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,630 DEBUG Processing 544/647 atomic regions from SNP 162949 to 163549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,631 DEBUG Processing 747/854 atomic regions from SNP 224036 to 224636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,727 DEBUG Processing 189/235 atomic regions from SNP 56588 to 57189 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:46,774 DEBUG Processing 730/896 atomic regions from SNP 218814 to 219414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,846 DEBUG Processing 591/1132 atomic regions from SNP 177194 to 177794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,859 DEBUG Processing 639/1020 atomic regions from SNP 191638 to 192238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,864 DEBUG Processing 748/854 atomic regions from SNP 224336 to 224936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,884 DEBUG Processing 545/647 atomic regions from SNP 163249 to 163849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,947 DEBUG Processing 190/235 atomic regions from SNP 56889 to 57490 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:47,002 DEBUG Processing 731/896 atomic regions from SNP 219114 to 219714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,109 DEBUG Processing 592/1132 atomic regions from SNP 177494 to 178094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,125 DEBUG Processing 749/854 atomic regions from SNP 224636 to 225236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,138 DEBUG Processing 640/1020 atomic regions from SNP 191938 to 192538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,139 DEBUG Processing 546/647 atomic regions from SNP 163549 to 164149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,178 DEBUG Processing 191/235 atomic regions from SNP 57190 to 57791 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:47,258 DEBUG Processing 732/896 atomic regions from SNP 219414 to 220014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,373 DEBUG Processing 593/1132 atomic regions from SNP 177794 to 178394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,383 DEBUG Processing 750/854 atomic regions from SNP 224936 to 225536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,385 DEBUG Processing 547/647 atomic regions from SNP 163849 to 164449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,405 DEBUG Processing 641/1020 atomic regions from SNP 192238 to 192838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,423 DEBUG Processing 192/235 atomic regions from SNP 57491 to 58092 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:47,507 DEBUG Processing 733/896 atomic regions from SNP 219714 to 220314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,622 DEBUG Processing 751/854 atomic regions from SNP 225236 to 225836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,636 DEBUG Processing 594/1132 atomic regions from SNP 178094 to 178694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,639 DEBUG Processing 548/647 atomic regions from SNP 164149 to 164749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,659 DEBUG Processing 642/1020 atomic regions from SNP 192538 to 193138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,666 DEBUG Processing 193/235 atomic regions from SNP 57792 to 58393 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:47,743 DEBUG Processing 734/896 atomic regions from SNP 220014 to 220614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,871 DEBUG Processing 752/854 atomic regions from SNP 225536 to 226136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,893 DEBUG Processing 549/647 atomic regions from SNP 164449 to 165049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,896 DEBUG Processing 595/1132 atomic regions from SNP 178394 to 178994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,915 DEBUG Processing 194/235 atomic regions from SNP 58093 to 58694 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:47,915 DEBUG Processing 643/1020 atomic regions from SNP 192838 to 193438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,987 DEBUG Processing 735/896 atomic regions from SNP 220314 to 220914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,115 DEBUG Processing 753/854 atomic regions from SNP 225836 to 226436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,130 DEBUG Processing 550/647 atomic regions from SNP 164749 to 165349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,165 DEBUG Processing 596/1132 atomic regions from SNP 178694 to 179294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,169 DEBUG Processing 195/235 atomic regions from SNP 58394 to 58995 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:48,179 DEBUG Processing 644/1020 atomic regions from SNP 193138 to 193738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,239 DEBUG Processing 736/896 atomic regions from SNP 220614 to 221214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,366 DEBUG Processing 551/647 atomic regions from SNP 165049 to 165649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,380 DEBUG Processing 754/854 atomic regions from SNP 226136 to 226736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,405 DEBUG Processing 196/235 atomic regions from SNP 58695 to 59296 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:48,438 DEBUG Processing 597/1132 atomic regions from SNP 178994 to 179594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,439 DEBUG Processing 645/1020 atomic regions from SNP 193438 to 194038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,501 DEBUG Processing 737/896 atomic regions from SNP 220914 to 221514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,598 DEBUG Processing 552/647 atomic regions from SNP 165349 to 165949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,624 DEBUG Processing 197/235 atomic regions from SNP 58996 to 59597 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:48,649 DEBUG Processing 755/854 atomic regions from SNP 226436 to 227036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,691 DEBUG Processing 646/1020 atomic regions from SNP 193738 to 194338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,703 DEBUG Processing 598/1132 atomic regions from SNP 179294 to 179894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,735 DEBUG Processing 738/896 atomic regions from SNP 221214 to 221814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,840 DEBUG Processing 553/647 atomic regions from SNP 165649 to 166249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,850 DEBUG Processing 198/235 atomic regions from SNP 59297 to 59898 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:48,914 DEBUG Processing 756/854 atomic regions from SNP 226736 to 227336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,945 DEBUG Processing 647/1020 atomic regions from SNP 194038 to 194638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,960 DEBUG Processing 739/896 atomic regions from SNP 221514 to 222114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,965 DEBUG Processing 599/1132 atomic regions from SNP 179594 to 180194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,077 DEBUG Processing 199/235 atomic regions from SNP 59598 to 60199 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:49,099 DEBUG Processing 554/647 atomic regions from SNP 165949 to 166549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,167 DEBUG Processing 757/854 atomic regions from SNP 227036 to 227636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,186 DEBUG Processing 740/896 atomic regions from SNP 221814 to 222414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,203 DEBUG Processing 648/1020 atomic regions from SNP 194338 to 194938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,233 DEBUG Processing 600/1132 atomic regions from SNP 179894 to 180494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,300 DEBUG Processing 200/235 atomic regions from SNP 59899 to 60500 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:49,357 DEBUG Processing 555/647 atomic regions from SNP 166249 to 166849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,409 DEBUG Processing 758/854 atomic regions from SNP 227336 to 227936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,417 DEBUG Processing 741/896 atomic regions from SNP 222114 to 222714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,456 DEBUG Processing 649/1020 atomic regions from SNP 194638 to 195238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,503 DEBUG Processing 601/1132 atomic regions from SNP 180194 to 180794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,519 DEBUG Processing 201/235 atomic regions from SNP 60200 to 60801 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:49,607 DEBUG Processing 556/647 atomic regions from SNP 166549 to 167149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,658 DEBUG Processing 742/896 atomic regions from SNP 222414 to 223014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,675 DEBUG Processing 759/854 atomic regions from SNP 227636 to 228236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,715 DEBUG Processing 650/1020 atomic regions from SNP 194938 to 195538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,749 DEBUG Processing 202/235 atomic regions from SNP 60501 to 61102 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:49,786 DEBUG Processing 602/1132 atomic regions from SNP 180494 to 181094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,858 DEBUG Processing 557/647 atomic regions from SNP 166849 to 167449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,892 DEBUG Processing 743/896 atomic regions from SNP 222714 to 223314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,939 DEBUG Processing 760/854 atomic regions from SNP 227936 to 228536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,971 DEBUG Processing 203/235 atomic regions from SNP 60802 to 61403 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:49,972 DEBUG Processing 651/1020 atomic regions from SNP 195238 to 195838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,047 DEBUG Processing 603/1132 atomic regions from SNP 180794 to 181394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,090 DEBUG Processing 558/647 atomic regions from SNP 167149 to 167749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,125 DEBUG Processing 744/896 atomic regions from SNP 223014 to 223614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,206 DEBUG Processing 761/854 atomic regions from SNP 228236 to 228836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,208 DEBUG Processing 204/235 atomic regions from SNP 61103 to 61704 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:50,228 DEBUG Processing 652/1020 atomic regions from SNP 195538 to 196138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,307 DEBUG Processing 604/1132 atomic regions from SNP 181094 to 181694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,318 DEBUG Processing 559/647 atomic regions from SNP 167449 to 168049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,360 DEBUG Processing 745/896 atomic regions from SNP 223314 to 223914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,437 DEBUG Processing 205/235 atomic regions from SNP 61404 to 62005 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:50,465 DEBUG Processing 762/854 atomic regions from SNP 228536 to 229136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,486 DEBUG Processing 653/1020 atomic regions from SNP 195838 to 196438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,550 DEBUG Processing 560/647 atomic regions from SNP 167749 to 168349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,574 DEBUG Processing 605/1132 atomic regions from SNP 181394 to 181994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,589 DEBUG Processing 746/896 atomic regions from SNP 223614 to 224214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,657 DEBUG Processing 206/235 atomic regions from SNP 61705 to 62306 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:50,701 DEBUG Processing 763/854 atomic regions from SNP 228836 to 229436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,745 DEBUG Processing 654/1020 atomic regions from SNP 196138 to 196738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,782 DEBUG Processing 561/647 atomic regions from SNP 168049 to 168649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,820 DEBUG Processing 747/896 atomic regions from SNP 223914 to 224514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,841 DEBUG Processing 606/1132 atomic regions from SNP 181694 to 182294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,877 DEBUG Processing 207/235 atomic regions from SNP 62006 to 62607 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:50,931 DEBUG Processing 764/854 atomic regions from SNP 229136 to 229736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,002 DEBUG Processing 655/1020 atomic regions from SNP 196438 to 197038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,015 DEBUG Processing 562/647 atomic regions from SNP 168349 to 168949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,050 DEBUG Processing 748/896 atomic regions from SNP 224214 to 224814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,099 DEBUG Processing 208/235 atomic regions from SNP 62307 to 62908 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:51,107 DEBUG Processing 607/1132 atomic regions from SNP 181994 to 182594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,161 DEBUG Processing 765/854 atomic regions from SNP 229436 to 230036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,256 DEBUG Processing 656/1020 atomic regions from SNP 196738 to 197338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,259 DEBUG Processing 563/647 atomic regions from SNP 168649 to 169249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,280 DEBUG Processing 749/896 atomic regions from SNP 224514 to 225114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,325 DEBUG Processing 209/235 atomic regions from SNP 62608 to 63208 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:51,372 DEBUG Processing 608/1132 atomic regions from SNP 182294 to 182894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,404 DEBUG Processing 766/854 atomic regions from SNP 229736 to 230336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,505 DEBUG Processing 750/896 atomic regions from SNP 224814 to 225414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,506 DEBUG Processing 657/1020 atomic regions from SNP 197038 to 197638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,519 DEBUG Processing 564/647 atomic regions from SNP 168949 to 169549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,546 DEBUG Processing 210/235 atomic regions from SNP 62908 to 63508 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:51,638 DEBUG Processing 609/1132 atomic regions from SNP 182594 to 183194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,664 DEBUG Processing 767/854 atomic regions from SNP 230036 to 230636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,733 DEBUG Processing 751/896 atomic regions from SNP 225114 to 225714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,760 DEBUG Processing 658/1020 atomic regions from SNP 197338 to 197938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,762 DEBUG Processing 211/235 atomic regions from SNP 63208 to 63808 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:51,771 DEBUG Processing 565/647 atomic regions from SNP 169249 to 169849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,904 DEBUG Processing 610/1132 atomic regions from SNP 182894 to 183494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,921 DEBUG Processing 768/854 atomic regions from SNP 230336 to 230936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,967 DEBUG Processing 752/896 atomic regions from SNP 225414 to 226014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,979 DEBUG Processing 212/235 atomic regions from SNP 63508 to 64108 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:52,013 DEBUG Processing 659/1020 atomic regions from SNP 197638 to 198238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,033 DEBUG Processing 566/647 atomic regions from SNP 169549 to 170149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,172 DEBUG Processing 611/1132 atomic regions from SNP 183194 to 183794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,184 DEBUG Processing 769/854 atomic regions from SNP 230636 to 231236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,204 DEBUG Processing 753/896 atomic regions from SNP 225714 to 226314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,212 DEBUG Processing 213/235 atomic regions from SNP 63808 to 64408 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:52,273 DEBUG Processing 660/1020 atomic regions from SNP 197938 to 198538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,291 DEBUG Processing 567/647 atomic regions from SNP 169849 to 170449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,439 DEBUG Processing 754/896 atomic regions from SNP 226014 to 226614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,440 DEBUG Processing 612/1132 atomic regions from SNP 183494 to 184094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,455 DEBUG Processing 770/854 atomic regions from SNP 230936 to 231536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,457 DEBUG Processing 214/235 atomic regions from SNP 64108 to 64708 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:52,539 DEBUG Processing 661/1020 atomic regions from SNP 198238 to 198838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,545 DEBUG Processing 568/647 atomic regions from SNP 170149 to 170749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,674 DEBUG Processing 755/896 atomic regions from SNP 226314 to 226914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,712 DEBUG Processing 215/235 atomic regions from SNP 64408 to 65008 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:52,714 DEBUG Processing 613/1132 atomic regions from SNP 183794 to 184394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,740 DEBUG Processing 771/854 atomic regions from SNP 231236 to 231836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,810 DEBUG Processing 662/1020 atomic regions from SNP 198538 to 199138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,815 DEBUG Processing 569/647 atomic regions from SNP 170449 to 171049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,898 DEBUG Processing 756/896 atomic regions from SNP 226614 to 227214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,940 DEBUG Processing 216/235 atomic regions from SNP 64708 to 65308 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:52,985 DEBUG Processing 614/1132 atomic regions from SNP 184094 to 184694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,012 DEBUG Processing 772/854 atomic regions from SNP 231536 to 232136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,075 DEBUG Processing 663/1020 atomic regions from SNP 198838 to 199438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,077 DEBUG Processing 570/647 atomic regions from SNP 170749 to 171349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,122 DEBUG Processing 757/896 atomic regions from SNP 226914 to 227514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,163 DEBUG Processing 217/235 atomic regions from SNP 65008 to 65608 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:53,263 DEBUG Processing 615/1132 atomic regions from SNP 184394 to 184994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,278 DEBUG Processing 773/854 atomic regions from SNP 231836 to 232436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,340 DEBUG Processing 571/647 atomic regions from SNP 171049 to 171649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,341 DEBUG Processing 664/1020 atomic regions from SNP 199138 to 199738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,355 DEBUG Processing 758/896 atomic regions from SNP 227214 to 227814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,381 DEBUG Processing 218/235 atomic regions from SNP 65308 to 65908 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:53,544 DEBUG Processing 616/1132 atomic regions from SNP 184694 to 185294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,552 DEBUG Processing 774/854 atomic regions from SNP 232136 to 232736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,580 DEBUG Processing 572/647 atomic regions from SNP 171349 to 171949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,603 DEBUG Processing 219/235 atomic regions from SNP 65608 to 66208 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:53,605 DEBUG Processing 665/1020 atomic regions from SNP 199438 to 200038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,618 DEBUG Processing 759/896 atomic regions from SNP 227514 to 228114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,802 DEBUG Processing 775/854 atomic regions from SNP 232436 to 233036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,825 DEBUG Processing 573/647 atomic regions from SNP 171649 to 172249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,827 DEBUG Processing 617/1132 atomic regions from SNP 184994 to 185594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,837 DEBUG Processing 220/235 atomic regions from SNP 65908 to 66508 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:53,870 DEBUG Processing 666/1020 atomic regions from SNP 199738 to 200338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,881 DEBUG Processing 760/896 atomic regions from SNP 227814 to 228414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,051 DEBUG Processing 776/854 atomic regions from SNP 232736 to 233336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,072 DEBUG Processing 574/647 atomic regions from SNP 171949 to 172549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,075 DEBUG Processing 221/235 atomic regions from SNP 66208 to 66808 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:54,111 DEBUG Processing 618/1132 atomic regions from SNP 185294 to 185894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,124 DEBUG Processing 761/896 atomic regions from SNP 228114 to 228714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,133 DEBUG Processing 667/1020 atomic regions from SNP 200038 to 200638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,295 DEBUG Processing 777/854 atomic regions from SNP 233036 to 233636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,314 DEBUG Processing 222/235 atomic regions from SNP 66508 to 67108 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:54,317 DEBUG Processing 575/647 atomic regions from SNP 172249 to 172849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,378 DEBUG Processing 762/896 atomic regions from SNP 228414 to 229014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,389 DEBUG Processing 619/1132 atomic regions from SNP 185594 to 186194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,398 DEBUG Processing 668/1020 atomic regions from SNP 200338 to 200938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,535 DEBUG Processing 778/854 atomic regions from SNP 233336 to 233936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,548 DEBUG Processing 223/235 atomic regions from SNP 66808 to 67408 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:54,560 DEBUG Processing 576/647 atomic regions from SNP 172549 to 173149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,621 DEBUG Processing 763/896 atomic regions from SNP 228714 to 229314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,668 DEBUG Processing 669/1020 atomic regions from SNP 200638 to 201238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,669 DEBUG Processing 620/1132 atomic regions from SNP 185894 to 186494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,773 DEBUG Processing 224/235 atomic regions from SNP 67108 to 67708 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:54,778 DEBUG Processing 779/854 atomic regions from SNP 233636 to 234236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,794 DEBUG Processing 577/647 atomic regions from SNP 172849 to 173449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,851 DEBUG Processing 764/896 atomic regions from SNP 229014 to 229614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,932 DEBUG Processing 670/1020 atomic regions from SNP 200938 to 201538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,942 DEBUG Processing 621/1132 atomic regions from SNP 186194 to 186794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,999 DEBUG Processing 225/235 atomic regions from SNP 67408 to 68008 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,024 DEBUG Processing 578/647 atomic regions from SNP 173149 to 173749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,040 DEBUG Processing 780/854 atomic regions from SNP 233936 to 234536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,079 DEBUG Processing 765/896 atomic regions from SNP 229314 to 229914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,194 DEBUG Processing 671/1020 atomic regions from SNP 201238 to 201838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,216 DEBUG Processing 622/1132 atomic regions from SNP 186494 to 187094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,236 DEBUG Processing 226/235 atomic regions from SNP 67708 to 68308 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,258 DEBUG Processing 579/647 atomic regions from SNP 173449 to 174049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,306 DEBUG Processing 766/896 atomic regions from SNP 229614 to 230214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,308 DEBUG Processing 781/854 atomic regions from SNP 234236 to 234836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,454 DEBUG Processing 672/1020 atomic regions from SNP 201538 to 202138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,470 DEBUG Processing 227/235 atomic regions from SNP 68008 to 68608 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,490 DEBUG Processing 623/1132 atomic regions from SNP 186794 to 187394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,503 DEBUG Processing 580/647 atomic regions from SNP 173749 to 174349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,533 DEBUG Processing 767/896 atomic regions from SNP 229914 to 230514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,560 DEBUG Processing 782/854 atomic regions from SNP 234536 to 235136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,697 DEBUG Processing 228/235 atomic regions from SNP 68308 to 68908 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,712 DEBUG Processing 673/1020 atomic regions from SNP 201838 to 202438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,747 DEBUG Processing 581/647 atomic regions from SNP 174049 to 174649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,761 DEBUG Processing 768/896 atomic regions from SNP 230214 to 230814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,766 DEBUG Processing 624/1132 atomic regions from SNP 187094 to 187694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,834 DEBUG Processing 783/854 atomic regions from SNP 234836 to 235436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,920 DEBUG Processing 229/235 atomic regions from SNP 68608 to 69208 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,969 DEBUG Processing 674/1020 atomic regions from SNP 202138 to 202738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,983 DEBUG Processing 582/647 atomic regions from SNP 174349 to 174949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,988 DEBUG Processing 769/896 atomic regions from SNP 230514 to 231114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,037 DEBUG Processing 625/1132 atomic regions from SNP 187394 to 187994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,102 DEBUG Processing 784/854 atomic regions from SNP 235136 to 235736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,149 DEBUG Processing 230/235 atomic regions from SNP 68908 to 69508 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,216 DEBUG Processing 770/896 atomic regions from SNP 230814 to 231414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,220 DEBUG Processing 583/647 atomic regions from SNP 174649 to 175249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,231 DEBUG Processing 675/1020 atomic regions from SNP 202438 to 203038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,308 DEBUG Processing 626/1132 atomic regions from SNP 187694 to 188294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,361 DEBUG Processing 785/854 atomic regions from SNP 235436 to 236036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,377 DEBUG Processing 231/235 atomic regions from SNP 69208 to 69808 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,449 DEBUG Processing 771/896 atomic regions from SNP 231114 to 231714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,456 DEBUG Processing 584/647 atomic regions from SNP 174949 to 175549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,487 DEBUG Processing 676/1020 atomic regions from SNP 202738 to 203338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,570 DEBUG Processing 627/1132 atomic regions from SNP 187994 to 188594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,603 DEBUG Processing 232/235 atomic regions from SNP 69508 to 70108 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,606 DEBUG Processing 786/854 atomic regions from SNP 235736 to 236336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,688 DEBUG Processing 772/896 atomic regions from SNP 231414 to 232014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,694 DEBUG Processing 585/647 atomic regions from SNP 175249 to 175849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,751 DEBUG Processing 677/1020 atomic regions from SNP 203038 to 203638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,824 DEBUG Processing 233/235 atomic regions from SNP 69808 to 70408 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,828 DEBUG Processing 628/1132 atomic regions from SNP 188294 to 188894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,861 DEBUG Processing 787/854 atomic regions from SNP 236036 to 236636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,920 DEBUG Processing 773/896 atomic regions from SNP 231714 to 232314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,928 DEBUG Processing 586/647 atomic regions from SNP 175549 to 176149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,023 DEBUG Processing 678/1020 atomic regions from SNP 203338 to 203938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,045 DEBUG Processing 234/235 atomic regions from SNP 70108 to 70708 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,091 DEBUG Processing 629/1132 atomic regions from SNP 188594 to 189194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,124 DEBUG Processing 788/854 atomic regions from SNP 236336 to 236936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,151 DEBUG Processing 774/896 atomic regions from SNP 232014 to 232614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,163 DEBUG Processing 587/647 atomic regions from SNP 175849 to 176449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,270 DEBUG Processing 235/235 atomic regions from SNP 70408 to 71008 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,314 DEBUG Processing 679/1020 atomic regions from SNP 203638 to 204238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,359 DEBUG Processing 630/1132 atomic regions from SNP 188894 to 189494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,382 DEBUG Processing 775/896 atomic regions from SNP 232314 to 232914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,396 DEBUG Processing 789/854 atomic regions from SNP 236636 to 237236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,396 DEBUG Unique SNPs positions in subchromosome 5: 71009 2025-01-31 09:45:57,419 DEBUG Processing 588/647 atomic regions from SNP 176149 to 176749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,510 DEBUG Subchromosome time: 62.18416453001555, subchromosome SNPs: 71009 2025-01-31 09:45:57,511 DEBUG Estimated BADs: [0.97, 5.81, 1.94, 0.48, 0.97, 0.48, 0.00, 0.00, 1.94, 0.48, 0.97, 9.68, 0.97, 2.90, 0.48, 9.68, 0.97, 1.94, 0.48, 0.48, 0.97, 1.94, 0.97, 9.68] SNP counts: [3896, 717, 10522, 3298, 9041, 5331, 2, 58, 5496, 15656, 3784, 154, 35619, 3774, 25609, 53, 16240, 8076, 28106, 13280, 44081, 3775, 9838, 35] SNP IDs counts: [3896, 717, 10522, 3298, 9041, 5331, 2, 58, 5496, 15656, 3784, 154, 35619, 3774, 25609, 53, 16240, 8076, 28106, 13280, 44081, 3775, 9838, 35] Critical gap: 749677bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.55Mbp, 7.93Mbp, 14.08Mbp, 16.10Mbp, 21.51Mbp, 26.91Mbp[1.11Mbp], 28.03Mbp[1.53Mbp], 29.75Mbp[1.39Mbp], 38.88Mbp, 48.26Mbp, 50.55Mbp, 50.64Mbp, 73.41Mbp, 75.79Mbp, 91.29Mbp, 91.35Mbp, 101.25Mbp, 105.96Mbp, 124.25Mbp[1.76Mbp], 134.04Mbp, 162.27Mbp, 164.37Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:45:57,511 DEBUG chrX time: 62.18470325996168 s 2025-01-31 09:45:57,606 DEBUG Processing 680/1020 atomic regions from SNP 203938 to 204538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,609 DEBUG Processing 776/896 atomic regions from SNP 232614 to 233214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,629 DEBUG Processing 631/1132 atomic regions from SNP 189194 to 189794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,654 DEBUG Processing 790/854 atomic regions from SNP 236936 to 237536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,670 DEBUG Processing 589/647 atomic regions from SNP 176449 to 177049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,680 DEBUG chrX: Fitting background model for 22 segments 2025-01-31 09:45:57,843 DEBUG Processing 777/896 atomic regions from SNP 232914 to 233514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,895 DEBUG Processing 681/1020 atomic regions from SNP 204238 to 204838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,898 DEBUG Processing 791/854 atomic regions from SNP 237236 to 237836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,906 DEBUG Processing 632/1132 atomic regions from SNP 189494 to 190094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,928 DEBUG Processing 590/647 atomic regions from SNP 176749 to 177349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,079 DEBUG Processing 778/896 atomic regions from SNP 233214 to 233814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,144 DEBUG Processing 792/854 atomic regions from SNP 237536 to 238136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,171 DEBUG Processing 591/647 atomic regions from SNP 177049 to 177649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,184 DEBUG Processing 682/1020 atomic regions from SNP 204538 to 205138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,187 DEBUG Processing 633/1132 atomic regions from SNP 189794 to 190394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,318 DEBUG Processing 779/896 atomic regions from SNP 233514 to 234114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,395 DEBUG Processing 793/854 atomic regions from SNP 237836 to 238436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,417 DEBUG Processing 592/647 atomic regions from SNP 177349 to 177949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,468 DEBUG Processing 634/1132 atomic regions from SNP 190094 to 190694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,482 DEBUG Processing 683/1020 atomic regions from SNP 204838 to 205438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,554 DEBUG Processing 780/896 atomic regions from SNP 233814 to 234414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,652 DEBUG Processing 794/854 atomic regions from SNP 238136 to 238736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,662 DEBUG Processing 593/647 atomic regions from SNP 177649 to 178249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,740 DEBUG Processing 635/1132 atomic regions from SNP 190394 to 190994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,746 DEBUG Processing 684/1020 atomic regions from SNP 205138 to 205738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,785 DEBUG Processing 781/896 atomic regions from SNP 234114 to 234714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,889 DEBUG Processing 795/854 atomic regions from SNP 238436 to 239036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,900 DEBUG Processing 594/647 atomic regions from SNP 177949 to 178549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,002 DEBUG Processing 636/1132 atomic regions from SNP 190694 to 191294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,010 DEBUG Processing 685/1020 atomic regions from SNP 205438 to 206038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,017 DEBUG Processing 782/896 atomic regions from SNP 234414 to 235014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,130 DEBUG Processing 796/854 atomic regions from SNP 238736 to 239336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,138 DEBUG Processing 595/647 atomic regions from SNP 178249 to 178849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,251 DEBUG Processing 783/896 atomic regions from SNP 234714 to 235314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,260 DEBUG Processing 637/1132 atomic regions from SNP 190994 to 191594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,287 DEBUG Processing 686/1020 atomic regions from SNP 205738 to 206338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,364 DEBUG Processing 797/854 atomic regions from SNP 239036 to 239636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,395 DEBUG Processing 596/647 atomic regions from SNP 178549 to 179149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,485 DEBUG Processing 784/896 atomic regions from SNP 235014 to 235614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,519 DEBUG Processing 638/1132 atomic regions from SNP 191294 to 191894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,556 DEBUG Processing 687/1020 atomic regions from SNP 206038 to 206638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,598 DEBUG Processing 798/854 atomic regions from SNP 239336 to 239936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,663 DEBUG Processing 597/647 atomic regions from SNP 178849 to 179449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,726 DEBUG Processing 785/896 atomic regions from SNP 235314 to 235914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,783 DEBUG Processing 639/1132 atomic regions from SNP 191594 to 192194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,834 DEBUG Processing 688/1020 atomic regions from SNP 206338 to 206938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,840 DEBUG Processing 799/854 atomic regions from SNP 239636 to 240236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,903 DEBUG Processing 598/647 atomic regions from SNP 179149 to 179749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,965 DEBUG Processing 786/896 atomic regions from SNP 235614 to 236214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,051 DEBUG Processing 640/1132 atomic regions from SNP 191894 to 192494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,107 DEBUG Processing 689/1020 atomic regions from SNP 206638 to 207238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,114 DEBUG Processing 800/854 atomic regions from SNP 239936 to 240536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,164 DEBUG Processing 599/647 atomic regions from SNP 179449 to 180049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,203 DEBUG Processing 787/896 atomic regions from SNP 235914 to 236514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,316 DEBUG Processing 641/1132 atomic regions from SNP 192194 to 192794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,372 DEBUG Processing 690/1020 atomic regions from SNP 206938 to 207538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,379 DEBUG Processing 801/854 atomic regions from SNP 240236 to 240836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,416 DEBUG Processing 600/647 atomic regions from SNP 179749 to 180349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,440 DEBUG Processing 788/896 atomic regions from SNP 236214 to 236814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,587 DEBUG Processing 642/1132 atomic regions from SNP 192494 to 193094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,657 DEBUG Processing 691/1020 atomic regions from SNP 207238 to 207838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,658 DEBUG Processing 802/854 atomic regions from SNP 240536 to 241136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,678 DEBUG Processing 789/896 atomic regions from SNP 236514 to 237114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,684 DEBUG Processing 601/647 atomic regions from SNP 180049 to 180649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,863 DEBUG Processing 643/1132 atomic regions from SNP 192794 to 193394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,919 DEBUG Processing 790/896 atomic regions from SNP 236814 to 237414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,923 DEBUG Processing 692/1020 atomic regions from SNP 207538 to 208138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,933 DEBUG Processing 803/854 atomic regions from SNP 240836 to 241436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,951 DEBUG Processing 602/647 atomic regions from SNP 180349 to 180949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,133 DEBUG Processing 644/1132 atomic regions from SNP 193094 to 193694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,157 DEBUG Processing 791/896 atomic regions from SNP 237114 to 237714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,198 DEBUG Processing 693/1020 atomic regions from SNP 207838 to 208438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,200 DEBUG Processing 804/854 atomic regions from SNP 241136 to 241736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,204 DEBUG Processing 603/647 atomic regions from SNP 180649 to 181249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,398 DEBUG Processing 792/896 atomic regions from SNP 237414 to 238014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,403 DEBUG Processing 645/1132 atomic regions from SNP 193394 to 193994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,454 DEBUG Processing 604/647 atomic regions from SNP 180949 to 181549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,455 DEBUG Processing 805/854 atomic regions from SNP 241436 to 242036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,477 DEBUG Processing 694/1020 atomic regions from SNP 208138 to 208738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,632 DEBUG Processing 793/896 atomic regions from SNP 237714 to 238314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,663 DEBUG Processing 646/1132 atomic regions from SNP 193694 to 194294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,697 DEBUG Processing 605/647 atomic regions from SNP 181249 to 181849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,721 DEBUG Processing 806/854 atomic regions from SNP 241736 to 242336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,751 DEBUG Processing 695/1020 atomic regions from SNP 208438 to 209038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,864 DEBUG Processing 794/896 atomic regions from SNP 238014 to 238614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,934 DEBUG Processing 647/1132 atomic regions from SNP 193994 to 194594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,950 DEBUG Processing 606/647 atomic regions from SNP 181549 to 182149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,989 DEBUG Processing 807/854 atomic regions from SNP 242036 to 242636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,044 DEBUG Processing 696/1020 atomic regions from SNP 208738 to 209338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,095 DEBUG Processing 795/896 atomic regions from SNP 238314 to 238914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,201 DEBUG Processing 607/647 atomic regions from SNP 181849 to 182449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,203 DEBUG Processing 648/1132 atomic regions from SNP 194294 to 194894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,259 DEBUG Processing 808/854 atomic regions from SNP 242336 to 242936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,311 DEBUG Processing 697/1020 atomic regions from SNP 209038 to 209638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,327 DEBUG Processing 796/896 atomic regions from SNP 238614 to 239214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,442 DEBUG Processing 608/647 atomic regions from SNP 182149 to 182749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,473 DEBUG Processing 649/1132 atomic regions from SNP 194594 to 195194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,519 DEBUG Processing 809/854 atomic regions from SNP 242636 to 243236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,558 DEBUG Processing 797/896 atomic regions from SNP 238914 to 239514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,568 DEBUG Processing 698/1020 atomic regions from SNP 209338 to 209938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,686 DEBUG Processing 609/647 atomic regions from SNP 182449 to 183049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,745 DEBUG Processing 650/1132 atomic regions from SNP 194894 to 195494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,777 DEBUG Processing 810/854 atomic regions from SNP 242936 to 243536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,790 DEBUG Processing 798/896 atomic regions from SNP 239214 to 239814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,826 DEBUG Processing 699/1020 atomic regions from SNP 209638 to 210238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,951 DEBUG Processing 610/647 atomic regions from SNP 182749 to 183349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,014 DEBUG Processing 651/1132 atomic regions from SNP 195194 to 195794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,021 DEBUG Processing 799/896 atomic regions from SNP 239514 to 240114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,045 DEBUG Processing 811/854 atomic regions from SNP 243236 to 243836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,088 DEBUG Processing 700/1020 atomic regions from SNP 209938 to 210538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,205 DEBUG Processing 611/647 atomic regions from SNP 183049 to 183649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,252 DEBUG Processing 800/896 atomic regions from SNP 239814 to 240414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,283 DEBUG Processing 652/1132 atomic regions from SNP 195494 to 196094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,296 DEBUG Processing 812/854 atomic regions from SNP 243536 to 244136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,363 DEBUG Processing 701/1020 atomic regions from SNP 210238 to 210838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,451 DEBUG Processing 612/647 atomic regions from SNP 183349 to 183949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,486 DEBUG Processing 801/896 atomic regions from SNP 240114 to 240714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,535 DEBUG Processing 813/854 atomic regions from SNP 243836 to 244436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,554 DEBUG Processing 653/1132 atomic regions from SNP 195794 to 196394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,643 DEBUG Processing 702/1020 atomic regions from SNP 210538 to 211138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,697 DEBUG Processing 613/647 atomic regions from SNP 183649 to 184249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,722 DEBUG Processing 802/896 atomic regions from SNP 240414 to 241014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,777 DEBUG Processing 814/854 atomic regions from SNP 244136 to 244736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,826 DEBUG Processing 654/1132 atomic regions from SNP 196094 to 196694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,889 DEBUG Processing 703/1020 atomic regions from SNP 210838 to 211438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,927 DEBUG Processing 614/647 atomic regions from SNP 183949 to 184549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,953 DEBUG Processing 803/896 atomic regions from SNP 240714 to 241314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,028 DEBUG Processing 815/854 atomic regions from SNP 244436 to 245036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,100 DEBUG Processing 655/1132 atomic regions from SNP 196394 to 196994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,142 DEBUG Processing 704/1020 atomic regions from SNP 211138 to 211738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,158 DEBUG Processing 615/647 atomic regions from SNP 184249 to 184849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,180 DEBUG Processing 804/896 atomic regions from SNP 241014 to 241614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,286 DEBUG Processing 816/854 atomic regions from SNP 244736 to 245336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,371 DEBUG Processing 656/1132 atomic regions from SNP 196694 to 197294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,394 DEBUG Processing 705/1020 atomic regions from SNP 211438 to 212038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,403 DEBUG Processing 616/647 atomic regions from SNP 184549 to 185149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,404 DEBUG Processing 805/896 atomic regions from SNP 241314 to 241914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,558 DEBUG Processing 817/854 atomic regions from SNP 245036 to 245636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,630 DEBUG Processing 617/647 atomic regions from SNP 184849 to 185449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,635 DEBUG Processing 806/896 atomic regions from SNP 241614 to 242214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,635 DEBUG Processing 657/1132 atomic regions from SNP 196994 to 197594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,647 DEBUG Processing 706/1020 atomic regions from SNP 211738 to 212338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,803 DEBUG Processing 818/854 atomic regions from SNP 245336 to 245936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,865 DEBUG Processing 618/647 atomic regions from SNP 185149 to 185749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,873 DEBUG Processing 807/896 atomic regions from SNP 241914 to 242514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,901 DEBUG Processing 658/1132 atomic regions from SNP 197294 to 197894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,906 DEBUG Processing 707/1020 atomic regions from SNP 212038 to 212638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,040 DEBUG Processing 819/854 atomic regions from SNP 245636 to 246236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,098 DEBUG Processing 619/647 atomic regions from SNP 185449 to 186049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,117 DEBUG Processing 808/896 atomic regions from SNP 242214 to 242814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,164 DEBUG Processing 659/1132 atomic regions from SNP 197594 to 198194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,166 DEBUG Processing 708/1020 atomic regions from SNP 212338 to 212938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,274 DEBUG Processing 820/854 atomic regions from SNP 245936 to 246536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,324 DEBUG Processing 620/647 atomic regions from SNP 185749 to 186349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,357 DEBUG Processing 809/896 atomic regions from SNP 242514 to 243114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,417 DEBUG Processing 709/1020 atomic regions from SNP 212638 to 213238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,424 DEBUG Processing 660/1132 atomic regions from SNP 197894 to 198494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,511 DEBUG Processing 821/854 atomic regions from SNP 246236 to 246836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,573 DEBUG Processing 621/647 atomic regions from SNP 186049 to 186649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,595 DEBUG Processing 810/896 atomic regions from SNP 242814 to 243414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,673 DEBUG Processing 710/1020 atomic regions from SNP 212938 to 213538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,692 DEBUG Processing 661/1132 atomic regions from SNP 198194 to 198794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,765 DEBUG Processing 822/854 atomic regions from SNP 246536 to 247136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,836 DEBUG Processing 811/896 atomic regions from SNP 243114 to 243714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,843 DEBUG Processing 622/647 atomic regions from SNP 186349 to 186949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,930 DEBUG Processing 711/1020 atomic regions from SNP 213238 to 213838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,961 DEBUG Processing 662/1132 atomic regions from SNP 198494 to 199094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,007 DEBUG Processing 823/854 atomic regions from SNP 246836 to 247436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,072 DEBUG Processing 812/896 atomic regions from SNP 243414 to 244014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,104 DEBUG Processing 623/647 atomic regions from SNP 186649 to 187249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,190 DEBUG Processing 712/1020 atomic regions from SNP 213538 to 214138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,233 DEBUG Processing 663/1132 atomic regions from SNP 198794 to 199394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,251 DEBUG Processing 824/854 atomic regions from SNP 247136 to 247736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,306 DEBUG Processing 813/896 atomic regions from SNP 243714 to 244314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,361 DEBUG Processing 624/647 atomic regions from SNP 186949 to 187549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,452 DEBUG Processing 713/1020 atomic regions from SNP 213838 to 214438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,504 DEBUG Processing 664/1132 atomic regions from SNP 199094 to 199694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,514 DEBUG Processing 825/854 atomic regions from SNP 247436 to 248036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,537 DEBUG Processing 814/896 atomic regions from SNP 244014 to 244614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,590 DEBUG Processing 625/647 atomic regions from SNP 187249 to 187849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,715 DEBUG Processing 714/1020 atomic regions from SNP 214138 to 214738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,770 DEBUG Processing 815/896 atomic regions from SNP 244314 to 244914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,780 DEBUG Processing 665/1132 atomic regions from SNP 199394 to 199994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,781 DEBUG Processing 826/854 atomic regions from SNP 247736 to 248336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,821 DEBUG Processing 626/647 atomic regions from SNP 187549 to 188149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,974 DEBUG Processing 715/1020 atomic regions from SNP 214438 to 215038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,005 DEBUG Processing 816/896 atomic regions from SNP 244614 to 245214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,037 DEBUG Processing 827/854 atomic regions from SNP 248036 to 248636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,054 DEBUG Processing 666/1132 atomic regions from SNP 199694 to 200294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,056 DEBUG Processing 627/647 atomic regions from SNP 187849 to 188449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,231 DEBUG Processing 716/1020 atomic regions from SNP 214738 to 215338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,242 DEBUG Processing 817/896 atomic regions from SNP 244914 to 245514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,274 DEBUG Processing 828/854 atomic regions from SNP 248336 to 248936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,292 DEBUG Processing 628/647 atomic regions from SNP 188149 to 188749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,328 DEBUG Processing 667/1132 atomic regions from SNP 199994 to 200594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,475 DEBUG Processing 818/896 atomic regions from SNP 245214 to 245814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,488 DEBUG Processing 717/1020 atomic regions from SNP 215038 to 215638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,516 DEBUG Processing 829/854 atomic regions from SNP 248636 to 249236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,533 DEBUG Processing 629/647 atomic regions from SNP 188449 to 189049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,604 DEBUG Processing 668/1132 atomic regions from SNP 200294 to 200894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,706 DEBUG Processing 819/896 atomic regions from SNP 245514 to 246114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,747 DEBUG Processing 718/1020 atomic regions from SNP 215338 to 215938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,753 DEBUG Processing 830/854 atomic regions from SNP 248936 to 249536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,770 DEBUG Processing 630/647 atomic regions from SNP 188749 to 189349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,874 DEBUG Processing 669/1132 atomic regions from SNP 200594 to 201194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,938 DEBUG Processing 820/896 atomic regions from SNP 245814 to 246414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,983 DEBUG Processing 831/854 atomic regions from SNP 249236 to 249836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,001 DEBUG Processing 719/1020 atomic regions from SNP 215638 to 216238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,001 DEBUG Processing 631/647 atomic regions from SNP 189049 to 189649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,174 DEBUG Processing 670/1132 atomic regions from SNP 200894 to 201494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,174 DEBUG Processing 821/896 atomic regions from SNP 246114 to 246714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,234 DEBUG Processing 832/854 atomic regions from SNP 249536 to 250136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,240 DEBUG Processing 632/647 atomic regions from SNP 189349 to 189949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,267 DEBUG Processing 720/1020 atomic regions from SNP 215938 to 216538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,414 DEBUG Processing 822/896 atomic regions from SNP 246414 to 247014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,461 DEBUG Processing 671/1132 atomic regions from SNP 201194 to 201794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,471 DEBUG Processing 833/854 atomic regions from SNP 249836 to 250436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,478 DEBUG Processing 633/647 atomic regions from SNP 189649 to 190249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,531 DEBUG Processing 721/1020 atomic regions from SNP 216238 to 216838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,650 DEBUG Processing 823/896 atomic regions from SNP 246714 to 247314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,712 DEBUG Processing 834/854 atomic regions from SNP 250136 to 250736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,735 DEBUG Processing 672/1132 atomic regions from SNP 201494 to 202094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,742 DEBUG Processing 634/647 atomic regions from SNP 189949 to 190549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,802 DEBUG Processing 722/1020 atomic regions from SNP 216538 to 217138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,881 DEBUG Processing 824/896 atomic regions from SNP 247014 to 247614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,958 DEBUG Processing 835/854 atomic regions from SNP 250436 to 251036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,009 DEBUG Processing 673/1132 atomic regions from SNP 201794 to 202394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,014 DEBUG Processing 635/647 atomic regions from SNP 190249 to 190849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,066 DEBUG Processing 723/1020 atomic regions from SNP 216838 to 217438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,111 DEBUG Processing 825/896 atomic regions from SNP 247314 to 247914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,199 DEBUG Processing 836/854 atomic regions from SNP 250736 to 251336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,276 DEBUG Processing 636/647 atomic regions from SNP 190549 to 191149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,279 DEBUG Processing 674/1132 atomic regions from SNP 202094 to 202694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,330 DEBUG Processing 724/1020 atomic regions from SNP 217138 to 217738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,349 DEBUG Processing 826/896 atomic regions from SNP 247614 to 248214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,426 DEBUG Processing 837/854 atomic regions from SNP 251036 to 251636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,517 DEBUG Processing 637/647 atomic regions from SNP 190849 to 191449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,547 DEBUG Processing 675/1132 atomic regions from SNP 202394 to 202994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,591 DEBUG Processing 827/896 atomic regions from SNP 247914 to 248514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,603 DEBUG Processing 725/1020 atomic regions from SNP 217438 to 218038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,678 DEBUG Processing 838/854 atomic regions from SNP 251336 to 251936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,748 DEBUG Processing 638/647 atomic regions from SNP 191149 to 191749 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,827 DEBUG Processing 676/1132 atomic regions from SNP 202694 to 203294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,831 DEBUG Processing 828/896 atomic regions from SNP 248214 to 248814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,872 DEBUG Processing 726/1020 atomic regions from SNP 217738 to 218338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,946 DEBUG Processing 839/854 atomic regions from SNP 251636 to 252236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,974 DEBUG Processing 639/647 atomic regions from SNP 191449 to 192049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,075 DEBUG Processing 829/896 atomic regions from SNP 248514 to 249114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,134 DEBUG Processing 677/1132 atomic regions from SNP 202994 to 203594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,144 DEBUG Processing 727/1020 atomic regions from SNP 218038 to 218638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,219 DEBUG Processing 840/854 atomic regions from SNP 251936 to 252536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,227 DEBUG Processing 640/647 atomic regions from SNP 191749 to 192349 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,314 DEBUG Processing 830/896 atomic regions from SNP 248814 to 249414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,417 DEBUG Processing 728/1020 atomic regions from SNP 218338 to 218938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,423 DEBUG Processing 678/1132 atomic regions from SNP 203294 to 203894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,477 DEBUG Processing 841/854 atomic regions from SNP 252236 to 252836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,492 DEBUG Processing 641/647 atomic regions from SNP 192049 to 192649 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,548 DEBUG Processing 831/896 atomic regions from SNP 249114 to 249714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,686 DEBUG Processing 729/1020 atomic regions from SNP 218638 to 219238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,709 DEBUG Processing 679/1132 atomic regions from SNP 203594 to 204194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,710 DEBUG Processing 842/854 atomic regions from SNP 252536 to 253136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,750 DEBUG Processing 642/647 atomic regions from SNP 192349 to 192949 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,784 DEBUG Processing 832/896 atomic regions from SNP 249414 to 250014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,959 DEBUG Processing 730/1020 atomic regions from SNP 218938 to 219538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,974 DEBUG Processing 843/854 atomic regions from SNP 252836 to 253436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,996 DEBUG Processing 643/647 atomic regions from SNP 192649 to 193249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,000 DEBUG Processing 680/1132 atomic regions from SNP 203894 to 204494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,021 DEBUG Processing 833/896 atomic regions from SNP 249714 to 250314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,233 DEBUG Processing 844/854 atomic regions from SNP 253136 to 253736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,234 DEBUG Processing 731/1020 atomic regions from SNP 219238 to 219838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,262 DEBUG Processing 644/647 atomic regions from SNP 192949 to 193549 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,264 DEBUG Processing 834/896 atomic regions from SNP 250014 to 250614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,295 DEBUG Processing 681/1132 atomic regions from SNP 204194 to 204794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,470 DEBUG Processing 845/854 atomic regions from SNP 253436 to 254036 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,508 DEBUG Processing 835/896 atomic regions from SNP 250314 to 250914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,518 DEBUG Processing 732/1020 atomic regions from SNP 219538 to 220138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,535 DEBUG Processing 645/647 atomic regions from SNP 193249 to 193849 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,593 DEBUG Processing 682/1132 atomic regions from SNP 204494 to 205094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,699 DEBUG Processing 846/854 atomic regions from SNP 253736 to 254336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,748 DEBUG Processing 836/896 atomic regions from SNP 250614 to 251214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,804 DEBUG Processing 733/1020 atomic regions from SNP 219838 to 220438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,812 DEBUG Processing 646/647 atomic regions from SNP 193549 to 194149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,870 DEBUG Processing 683/1132 atomic regions from SNP 204794 to 205394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,941 DEBUG Processing 847/854 atomic regions from SNP 254036 to 254636 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,984 DEBUG Processing 837/896 atomic regions from SNP 250914 to 251514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,080 DEBUG Processing 734/1020 atomic regions from SNP 220138 to 220738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,089 DEBUG Processing 647/647 atomic regions from SNP 193849 to 194449 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,149 DEBUG Processing 684/1132 atomic regions from SNP 205094 to 205694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,194 DEBUG Processing 848/854 atomic regions from SNP 254336 to 254936 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,211 DEBUG Processing 838/896 atomic regions from SNP 251214 to 251814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,245 DEBUG Unique SNPs positions in subchromosome 2: 194450 2025-01-31 09:46:12,342 DEBUG Processing 735/1020 atomic regions from SNP 220438 to 221038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,425 DEBUG Processing 685/1132 atomic regions from SNP 205394 to 205994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,440 DEBUG Processing 839/896 atomic regions from SNP 251514 to 252114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,447 DEBUG Processing 849/854 atomic regions from SNP 254636 to 255236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,602 DEBUG Processing 736/1020 atomic regions from SNP 220738 to 221338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,672 DEBUG Processing 840/896 atomic regions from SNP 251814 to 252414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,694 DEBUG Processing 686/1132 atomic regions from SNP 205694 to 206294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,698 DEBUG Processing 850/854 atomic regions from SNP 254936 to 255536 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,857 DEBUG Processing 737/1020 atomic regions from SNP 221038 to 221638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,903 DEBUG Processing 841/896 atomic regions from SNP 252114 to 252714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,932 DEBUG Processing 851/854 atomic regions from SNP 255236 to 255836 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,961 DEBUG Processing 687/1132 atomic regions from SNP 205994 to 206594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,110 DEBUG Processing 738/1020 atomic regions from SNP 221338 to 221938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,134 DEBUG Processing 842/896 atomic regions from SNP 252414 to 253014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,167 DEBUG Processing 852/854 atomic regions from SNP 255536 to 256136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,225 DEBUG Processing 688/1132 atomic regions from SNP 206294 to 206894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,362 DEBUG Processing 739/1020 atomic regions from SNP 221638 to 222238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,365 DEBUG Processing 843/896 atomic regions from SNP 252714 to 253314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,418 DEBUG Processing 853/854 atomic regions from SNP 255836 to 256436 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,493 DEBUG Processing 689/1132 atomic regions from SNP 206594 to 207194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,593 DEBUG Processing 844/896 atomic regions from SNP 253014 to 253614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,623 DEBUG Processing 740/1020 atomic regions from SNP 221938 to 222538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,666 DEBUG Processing 854/854 atomic regions from SNP 256136 to 256736 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,755 DEBUG Processing 690/1132 atomic regions from SNP 206894 to 207494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,805 DEBUG Unique SNPs positions in subchromosome 1: 256737 2025-01-31 09:46:13,827 DEBUG Processing 845/896 atomic regions from SNP 253314 to 253914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,891 DEBUG Processing 741/1020 atomic regions from SNP 222238 to 222838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,014 DEBUG Processing 691/1132 atomic regions from SNP 207194 to 207794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,057 DEBUG Processing 846/896 atomic regions from SNP 253614 to 254214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,162 DEBUG Processing 742/1020 atomic regions from SNP 222538 to 223138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,272 DEBUG Processing 692/1132 atomic regions from SNP 207494 to 208094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,288 DEBUG Processing 847/896 atomic regions from SNP 253914 to 254514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,440 DEBUG Processing 743/1020 atomic regions from SNP 222838 to 223438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,523 DEBUG Processing 848/896 atomic regions from SNP 254214 to 254814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,535 DEBUG Processing 693/1132 atomic regions from SNP 207794 to 208394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,706 DEBUG Processing 744/1020 atomic regions from SNP 223138 to 223738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,755 DEBUG Processing 849/896 atomic regions from SNP 254514 to 255114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,801 DEBUG Processing 694/1132 atomic regions from SNP 208094 to 208694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,957 DEBUG Processing 745/1020 atomic regions from SNP 223438 to 224038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,986 DEBUG Processing 850/896 atomic regions from SNP 254814 to 255414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,068 DEBUG Processing 695/1132 atomic regions from SNP 208394 to 208994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,206 DEBUG Processing 746/1020 atomic regions from SNP 223738 to 224338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,215 DEBUG Processing 851/896 atomic regions from SNP 255114 to 255714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,333 DEBUG Processing 696/1132 atomic regions from SNP 208694 to 209294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,442 DEBUG Processing 852/896 atomic regions from SNP 255414 to 256014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,453 DEBUG Processing 747/1020 atomic regions from SNP 224038 to 224638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,597 DEBUG Processing 697/1132 atomic regions from SNP 208994 to 209594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,673 DEBUG Processing 853/896 atomic regions from SNP 255714 to 256314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,696 DEBUG Processing 748/1020 atomic regions from SNP 224338 to 224938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,858 DEBUG Processing 698/1132 atomic regions from SNP 209294 to 209894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,908 DEBUG Processing 854/896 atomic regions from SNP 256014 to 256614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,960 DEBUG Processing 749/1020 atomic regions from SNP 224638 to 225238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,124 DEBUG Processing 699/1132 atomic regions from SNP 209594 to 210194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,144 DEBUG Processing 855/896 atomic regions from SNP 256314 to 256914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,249 DEBUG Processing 750/1020 atomic regions from SNP 224938 to 225538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,374 DEBUG Processing 856/896 atomic regions from SNP 256614 to 257214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,382 DEBUG Processing 700/1132 atomic regions from SNP 209894 to 210494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,526 DEBUG Processing 751/1020 atomic regions from SNP 225238 to 225838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,604 DEBUG Processing 857/896 atomic regions from SNP 256914 to 257514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,636 DEBUG Processing 701/1132 atomic regions from SNP 210194 to 210794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,811 DEBUG Processing 752/1020 atomic regions from SNP 225538 to 226138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,833 DEBUG Processing 858/896 atomic regions from SNP 257214 to 257814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,887 DEBUG Processing 702/1132 atomic regions from SNP 210494 to 211094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,067 DEBUG Processing 859/896 atomic regions from SNP 257514 to 258114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,077 DEBUG Processing 753/1020 atomic regions from SNP 225838 to 226438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,147 DEBUG Processing 703/1132 atomic regions from SNP 210794 to 211394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,304 DEBUG Processing 860/896 atomic regions from SNP 257814 to 258414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,348 DEBUG Processing 754/1020 atomic regions from SNP 226138 to 226738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,412 DEBUG Processing 704/1132 atomic regions from SNP 211094 to 211694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,539 DEBUG Processing 861/896 atomic regions from SNP 258114 to 258714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,645 DEBUG Processing 755/1020 atomic regions from SNP 226438 to 227038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,684 DEBUG Processing 705/1132 atomic regions from SNP 211394 to 211994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,766 DEBUG Processing 862/896 atomic regions from SNP 258414 to 259014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,938 DEBUG Processing 756/1020 atomic regions from SNP 226738 to 227338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,952 DEBUG Processing 706/1132 atomic regions from SNP 211694 to 212294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,994 DEBUG Processing 863/896 atomic regions from SNP 258714 to 259314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,211 DEBUG Processing 757/1020 atomic regions from SNP 227038 to 227638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,220 DEBUG Processing 707/1132 atomic regions from SNP 211994 to 212594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,229 DEBUG Processing 864/896 atomic regions from SNP 259014 to 259614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,473 DEBUG Processing 865/896 atomic regions from SNP 259314 to 259914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,473 DEBUG Processing 758/1020 atomic regions from SNP 227338 to 227938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,482 DEBUG Processing 708/1132 atomic regions from SNP 212294 to 212894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,706 DEBUG Processing 866/896 atomic regions from SNP 259614 to 260214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,729 DEBUG Processing 759/1020 atomic regions from SNP 227638 to 228238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,747 DEBUG Processing 709/1132 atomic regions from SNP 212594 to 213194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,934 DEBUG Processing 867/896 atomic regions from SNP 259914 to 260514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,999 DEBUG Processing 760/1020 atomic regions from SNP 227938 to 228538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,012 DEBUG Processing 710/1132 atomic regions from SNP 212894 to 213494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,158 DEBUG Processing 868/896 atomic regions from SNP 260214 to 260814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,264 DEBUG Processing 761/1020 atomic regions from SNP 228238 to 228838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,277 DEBUG Processing 711/1132 atomic regions from SNP 213194 to 213794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,380 DEBUG Processing 869/896 atomic regions from SNP 260514 to 261114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,547 DEBUG Processing 762/1020 atomic regions from SNP 228538 to 229138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,559 DEBUG Processing 712/1132 atomic regions from SNP 213494 to 214094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,613 DEBUG Processing 870/896 atomic regions from SNP 260814 to 261414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,815 DEBUG Processing 763/1020 atomic regions from SNP 228838 to 229438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,849 DEBUG Processing 713/1132 atomic regions from SNP 213794 to 214394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,853 DEBUG Processing 871/896 atomic regions from SNP 261114 to 261714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,077 DEBUG Processing 764/1020 atomic regions from SNP 229138 to 229738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,099 DEBUG Processing 872/896 atomic regions from SNP 261414 to 262014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,128 DEBUG Processing 714/1132 atomic regions from SNP 214094 to 214694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,340 DEBUG Processing 765/1020 atomic regions from SNP 229438 to 230038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,342 DEBUG Processing 873/896 atomic regions from SNP 261714 to 262314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,399 DEBUG Processing 715/1132 atomic regions from SNP 214394 to 214994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,580 DEBUG Processing 874/896 atomic regions from SNP 262014 to 262614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,595 DEBUG Processing 766/1020 atomic regions from SNP 229738 to 230338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,670 DEBUG Processing 716/1132 atomic regions from SNP 214694 to 215294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,810 DEBUG Processing 875/896 atomic regions from SNP 262314 to 262914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,848 DEBUG Processing 767/1020 atomic regions from SNP 230038 to 230638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,942 DEBUG Processing 717/1132 atomic regions from SNP 214994 to 215594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,038 DEBUG Processing 876/896 atomic regions from SNP 262614 to 263214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,098 DEBUG Processing 768/1020 atomic regions from SNP 230338 to 230938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,211 DEBUG Processing 718/1132 atomic regions from SNP 215294 to 215894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,271 DEBUG Processing 877/896 atomic regions from SNP 262914 to 263514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,348 DEBUG Processing 769/1020 atomic regions from SNP 230638 to 231238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,474 DEBUG Processing 719/1132 atomic regions from SNP 215594 to 216194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,500 DEBUG Processing 878/896 atomic regions from SNP 263214 to 263814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,601 DEBUG Processing 770/1020 atomic regions from SNP 230938 to 231538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,739 DEBUG Processing 879/896 atomic regions from SNP 263514 to 264114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,743 DEBUG Processing 720/1132 atomic regions from SNP 215894 to 216494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,851 DEBUG Processing 771/1020 atomic regions from SNP 231238 to 231838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,976 DEBUG Processing 880/896 atomic regions from SNP 263814 to 264414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,015 DEBUG Processing 721/1132 atomic regions from SNP 216194 to 216794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,103 DEBUG Processing 772/1020 atomic regions from SNP 231538 to 232138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,211 DEBUG Processing 881/896 atomic regions from SNP 264114 to 264714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,287 DEBUG Processing 722/1132 atomic regions from SNP 216494 to 217094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,356 DEBUG Processing 773/1020 atomic regions from SNP 231838 to 232438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,444 DEBUG Processing 882/896 atomic regions from SNP 264414 to 265014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,555 DEBUG Processing 723/1132 atomic regions from SNP 216794 to 217394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,610 DEBUG Processing 774/1020 atomic regions from SNP 232138 to 232738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,677 DEBUG Processing 883/896 atomic regions from SNP 264714 to 265314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,816 DEBUG Processing 724/1132 atomic regions from SNP 217094 to 217694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,865 DEBUG Processing 775/1020 atomic regions from SNP 232438 to 233038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,904 DEBUG Processing 884/896 atomic regions from SNP 265014 to 265614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,076 DEBUG Processing 725/1132 atomic regions from SNP 217394 to 217994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,122 DEBUG Processing 776/1020 atomic regions from SNP 232738 to 233338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,133 DEBUG Processing 885/896 atomic regions from SNP 265314 to 265914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,344 DEBUG Processing 726/1132 atomic regions from SNP 217694 to 218294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,363 DEBUG Processing 886/896 atomic regions from SNP 265614 to 266214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,385 DEBUG Processing 777/1020 atomic regions from SNP 233038 to 233638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,590 DEBUG Processing 887/896 atomic regions from SNP 265914 to 266514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,630 DEBUG Processing 727/1132 atomic regions from SNP 217994 to 218594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,648 DEBUG Processing 778/1020 atomic regions from SNP 233338 to 233938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,817 DEBUG Processing 888/896 atomic regions from SNP 266214 to 266814 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,906 DEBUG Processing 779/1020 atomic regions from SNP 233638 to 234238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,907 DEBUG Processing 728/1132 atomic regions from SNP 218294 to 218894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,045 DEBUG Processing 889/896 atomic regions from SNP 266514 to 267114 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,163 DEBUG Processing 780/1020 atomic regions from SNP 233938 to 234538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,190 DEBUG Processing 729/1132 atomic regions from SNP 218594 to 219194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,278 DEBUG Processing 890/896 atomic regions from SNP 266814 to 267414 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,413 DEBUG Processing 781/1020 atomic regions from SNP 234238 to 234838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,471 DEBUG Processing 730/1132 atomic regions from SNP 218894 to 219494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,512 DEBUG Processing 891/896 atomic regions from SNP 267114 to 267714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,661 DEBUG Processing 782/1020 atomic regions from SNP 234538 to 235138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,749 DEBUG Processing 892/896 atomic regions from SNP 267414 to 268014 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,757 DEBUG Processing 731/1132 atomic regions from SNP 219194 to 219794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,901 DEBUG Processing 783/1020 atomic regions from SNP 234838 to 235438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,936 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:46:24,983 DEBUG Processing 893/896 atomic regions from SNP 267714 to 268314 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,029 DEBUG Processing 732/1132 atomic regions from SNP 219494 to 220094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,120 DEBUG Subchromosome time: 193.2217679489404, subchromosome SNPs: 194450 2025-01-31 09:46:25,121 DEBUG Estimated BADs: [1.53, 0.51, 3.06, 1.53, 0.51, 4.59, 7.64, 3.06, 1.53, 0.51, 1.53, 3.06, 1.53, 0.38, 0.76, 1.53, 0.51, 1.53, 3.06, 0.51, 0.15, 1.53, 4.59, 3.06, 6.11, 3.06, 1.53, 0.51, 3.06, 6.11] SNP counts: [22658, 27122, 1204, 2686, 8903, 3045, 511, 8323, 2407, 5679, 12052, 3434, 3128, 27008, 10813, 5367, 12313, 17142, 6906, 2956, 2700, 3043, 6266, 22358, 7943, 10520, 3298, 1881, 15674, 2728] SNP IDs counts: [22658, 27122, 1204, 2686, 8903, 3045, 511, 8323, 2407, 5679, 12052, 3434, 3128, 27008, 10813, 5367, 12313, 17142, 6906, 2956, 2700, 3043, 6266, 22358, 7943, 10520, 3298, 1881, 15674, 2728] Critical gap: 686677bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 16.48Mbp, 32.65Mbp, 33.28Mbp, 34.78Mbp, 40.13Mbp, 41.86Mbp[0.88Mbp], 43.06Mbp, 47.51Mbp, 48.81Mbp, 52.25Mbp, 58.91Mbp, 62.53Mbp, 64.24Mbp, 80.51Mbp, 86.62Mbp, 89.73Mbp, 97.10Mbp, 106.56Mbp, 110.29Mbp, 112.07Mbp, 113.96Mbp, 115.82Mbp, 119.20Mbp, 132.05Mbp, 136.21Mbp, 141.72Mbp, 143.49Mbp, 144.89Mbp, 154.82Mbp, 156.51Mbp] 2025-01-31 09:46:25,121 DEBUG chr4 time: 193.22230595699511 s 2025-01-31 09:46:25,150 DEBUG Processing 784/1020 atomic regions from SNP 235138 to 235738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,217 DEBUG Processing 894/896 atomic regions from SNP 268014 to 268614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,277 DEBUG chr4: Fitting background model for 30 segments 2025-01-31 09:46:25,305 DEBUG Processing 733/1132 atomic regions from SNP 219794 to 220394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,403 DEBUG Processing 785/1020 atomic regions from SNP 235438 to 236038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,450 DEBUG Processing 895/896 atomic regions from SNP 268314 to 268914 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,583 DEBUG Processing 734/1132 atomic regions from SNP 220094 to 220694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,670 DEBUG Processing 786/1020 atomic regions from SNP 235738 to 236338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,683 DEBUG Processing 896/896 atomic regions from SNP 268614 to 269214 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,809 DEBUG Unique SNPs positions in subchromosome 1: 269215 2025-01-31 09:46:25,856 DEBUG Processing 735/1132 atomic regions from SNP 220394 to 220994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,932 DEBUG Processing 787/1020 atomic regions from SNP 236038 to 236638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,118 DEBUG Processing 736/1132 atomic regions from SNP 220694 to 221294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,197 DEBUG Processing 788/1020 atomic regions from SNP 236338 to 236938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,384 DEBUG Processing 737/1132 atomic regions from SNP 220994 to 221594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,459 DEBUG Processing 789/1020 atomic regions from SNP 236638 to 237238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,646 DEBUG Processing 738/1132 atomic regions from SNP 221294 to 221894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,723 DEBUG Processing 790/1020 atomic regions from SNP 236938 to 237538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,902 DEBUG Processing 739/1132 atomic regions from SNP 221594 to 222194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,984 DEBUG Processing 791/1020 atomic regions from SNP 237238 to 237838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,161 DEBUG Processing 740/1132 atomic regions from SNP 221894 to 222494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,245 DEBUG Processing 792/1020 atomic regions from SNP 237538 to 238138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,424 DEBUG Processing 741/1132 atomic regions from SNP 222194 to 222794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,502 DEBUG Processing 793/1020 atomic regions from SNP 237838 to 238438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,698 DEBUG Processing 742/1132 atomic regions from SNP 222494 to 223094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,761 DEBUG Processing 794/1020 atomic regions from SNP 238138 to 238738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,962 DEBUG Processing 743/1132 atomic regions from SNP 222794 to 223394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,010 DEBUG Processing 795/1020 atomic regions from SNP 238438 to 239038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,245 DEBUG Processing 744/1132 atomic regions from SNP 223094 to 223694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,260 DEBUG Processing 796/1020 atomic regions from SNP 238738 to 239338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,520 DEBUG Processing 797/1020 atomic regions from SNP 239038 to 239638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,538 DEBUG Processing 745/1132 atomic regions from SNP 223394 to 223994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,775 DEBUG Processing 798/1020 atomic regions from SNP 239338 to 239938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,813 DEBUG Processing 746/1132 atomic regions from SNP 223694 to 224294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,028 DEBUG Processing 799/1020 atomic regions from SNP 239638 to 240238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,123 DEBUG Processing 747/1132 atomic regions from SNP 223994 to 224594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,322 DEBUG Processing 800/1020 atomic regions from SNP 239938 to 240538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,436 DEBUG Processing 748/1132 atomic regions from SNP 224294 to 224894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,575 DEBUG Processing 801/1020 atomic regions from SNP 240238 to 240838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,728 DEBUG Processing 749/1132 atomic regions from SNP 224594 to 225194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,827 DEBUG Processing 802/1020 atomic regions from SNP 240538 to 241138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,015 DEBUG Processing 750/1132 atomic regions from SNP 224894 to 225494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,076 DEBUG Processing 803/1020 atomic regions from SNP 240838 to 241438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,278 DEBUG Processing 751/1132 atomic regions from SNP 225194 to 225794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,329 DEBUG Processing 804/1020 atomic regions from SNP 241138 to 241738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,564 DEBUG Processing 752/1132 atomic regions from SNP 225494 to 226094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,586 DEBUG Processing 805/1020 atomic regions from SNP 241438 to 242038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,843 DEBUG Processing 806/1020 atomic regions from SNP 241738 to 242338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,854 DEBUG Processing 753/1132 atomic regions from SNP 225794 to 226394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,115 DEBUG Processing 807/1020 atomic regions from SNP 242038 to 242638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,182 DEBUG Processing 754/1132 atomic regions from SNP 226094 to 226694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,372 DEBUG Processing 808/1020 atomic regions from SNP 242338 to 242938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,480 DEBUG Processing 755/1132 atomic regions from SNP 226394 to 226994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,621 DEBUG Processing 809/1020 atomic regions from SNP 242638 to 243238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,771 DEBUG Processing 756/1132 atomic regions from SNP 226694 to 227294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,869 DEBUG Processing 810/1020 atomic regions from SNP 242938 to 243538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,043 DEBUG Processing 757/1132 atomic regions from SNP 226994 to 227594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,126 DEBUG Processing 811/1020 atomic regions from SNP 243238 to 243838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,325 DEBUG Processing 758/1132 atomic regions from SNP 227294 to 227894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,390 DEBUG Processing 812/1020 atomic regions from SNP 243538 to 244138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,617 DEBUG Processing 759/1132 atomic regions from SNP 227594 to 228194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,656 DEBUG Processing 813/1020 atomic regions from SNP 243838 to 244438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,910 DEBUG Processing 760/1132 atomic regions from SNP 227894 to 228494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,919 DEBUG Processing 814/1020 atomic regions from SNP 244138 to 244738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,182 DEBUG Processing 815/1020 atomic regions from SNP 244438 to 245038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,194 DEBUG Processing 761/1132 atomic regions from SNP 228194 to 228794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,445 DEBUG Processing 816/1020 atomic regions from SNP 244738 to 245338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,470 DEBUG Processing 762/1132 atomic regions from SNP 228494 to 229094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,704 DEBUG Processing 817/1020 atomic regions from SNP 245038 to 245638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,752 DEBUG Processing 763/1132 atomic regions from SNP 228794 to 229394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,964 DEBUG Processing 818/1020 atomic regions from SNP 245338 to 245938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,050 DEBUG Processing 764/1132 atomic regions from SNP 229094 to 229694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,219 DEBUG Processing 819/1020 atomic regions from SNP 245638 to 246238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,342 DEBUG Processing 765/1132 atomic regions from SNP 229394 to 229994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,474 DEBUG Processing 820/1020 atomic regions from SNP 245938 to 246538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,649 DEBUG Processing 766/1132 atomic regions from SNP 229694 to 230294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,732 DEBUG Processing 821/1020 atomic regions from SNP 246238 to 246838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,949 DEBUG Processing 767/1132 atomic regions from SNP 229994 to 230594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,990 DEBUG Processing 822/1020 atomic regions from SNP 246538 to 247138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,247 DEBUG Processing 768/1132 atomic regions from SNP 230294 to 230894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,251 DEBUG Processing 823/1020 atomic regions from SNP 246838 to 247438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,381 DEBUG Subchromosome time: 260.26743109198287, subchromosome SNPs: 256737 2025-01-31 09:46:35,381 DEBUG Estimated BADs: [1.49, 0.50, 1.49, 4.48, 1.49, 7.47, 2.99, 1.49, 0.75, 0.50, 1.49, 0.25, 1.49, 0.30, 1.49, 0.30, 0.50, 1.49, 0.75, 7.47, 1.49, 4.48, 1.49, 4.48, 1.49, 5.98, 0.75, 4.48, 2.99] SNP counts: [4686, 22717, 6148, 2285, 9182, 710, 10087, 5686, 10824, 8400, 6326, 14369, 9582, 5103, 11724, 8990, 7813, 13198, 10772, 348, 17685, 3300, 9486, 9115, 8052, 697, 7368, 18129, 13955] SNP IDs counts: [4686, 22717, 6148, 2285, 9182, 710, 10087, 5686, 10824, 8400, 6326, 14369, 9582, 5103, 11724, 8990, 7813, 13198, 10772, 348, 17685, 3300, 9486, 9115, 8052, 697, 7368, 18129, 13955] Critical gap: 674350bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.76Mbp, 20.85Mbp, 24.32Mbp, 25.54Mbp, 30.87Mbp, 31.24Mbp, 36.70Mbp, 39.80Mbp, 46.12Mbp, 50.96Mbp, 54.38Mbp, 63.17Mbp, 68.43Mbp, 71.56Mbp, 77.94Mbp, 83.43Mbp, 88.03Mbp, 97.68Mbp, 103.65Mbp, 103.83Mbp, 113.73Mbp, 115.47Mbp, 120.45Mbp, 125.35Mbp, 129.71Mbp, 130.13Mbp, 134.14Mbp, 143.97Mbp, 151.83Mbp] 2025-01-31 09:46:35,381 DEBUG chr5 time: 260.2679796658922 s 2025-01-31 09:46:35,512 DEBUG Processing 824/1020 atomic regions from SNP 247138 to 247738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,523 DEBUG chr5: Fitting background model for 29 segments 2025-01-31 09:46:35,542 DEBUG Processing 769/1132 atomic regions from SNP 230594 to 231194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,777 DEBUG Processing 825/1020 atomic regions from SNP 247438 to 248038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,840 DEBUG Processing 770/1132 atomic regions from SNP 230894 to 231494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,032 DEBUG Processing 826/1020 atomic regions from SNP 247738 to 248338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,106 DEBUG Processing 771/1132 atomic regions from SNP 231194 to 231794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,281 DEBUG Processing 827/1020 atomic regions from SNP 248038 to 248638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,393 DEBUG Processing 772/1132 atomic regions from SNP 231494 to 232094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,529 DEBUG Processing 828/1020 atomic regions from SNP 248338 to 248938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,691 DEBUG Processing 773/1132 atomic regions from SNP 231794 to 232394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,782 DEBUG Processing 829/1020 atomic regions from SNP 248638 to 249238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,965 DEBUG Processing 774/1132 atomic regions from SNP 232094 to 232694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,042 DEBUG Processing 830/1020 atomic regions from SNP 248938 to 249538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,241 DEBUG Processing 775/1132 atomic regions from SNP 232394 to 232994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,329 DEBUG Processing 831/1020 atomic regions from SNP 249238 to 249838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,543 DEBUG Processing 776/1132 atomic regions from SNP 232694 to 233294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,626 DEBUG Processing 832/1020 atomic regions from SNP 249538 to 250138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,861 DEBUG Processing 777/1132 atomic regions from SNP 232994 to 233594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,899 DEBUG Processing 833/1020 atomic regions from SNP 249838 to 250438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,179 DEBUG Processing 834/1020 atomic regions from SNP 250138 to 250738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,180 DEBUG Processing 778/1132 atomic regions from SNP 233294 to 233894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,452 DEBUG Processing 835/1020 atomic regions from SNP 250438 to 251038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,488 DEBUG Processing 779/1132 atomic regions from SNP 233594 to 234194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,724 DEBUG Processing 836/1020 atomic regions from SNP 250738 to 251338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,783 DEBUG Processing 780/1132 atomic regions from SNP 233894 to 234494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,992 DEBUG Processing 837/1020 atomic regions from SNP 251038 to 251638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,082 DEBUG Processing 781/1132 atomic regions from SNP 234194 to 234794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,263 DEBUG Processing 838/1020 atomic regions from SNP 251338 to 251938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,364 DEBUG Processing 782/1132 atomic regions from SNP 234494 to 235094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,530 DEBUG Processing 839/1020 atomic regions from SNP 251638 to 252238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,642 DEBUG Processing 783/1132 atomic regions from SNP 234794 to 235394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,795 DEBUG Processing 840/1020 atomic regions from SNP 251938 to 252538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,917 DEBUG Processing 784/1132 atomic regions from SNP 235094 to 235694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,069 DEBUG Processing 841/1020 atomic regions from SNP 252238 to 252838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,195 DEBUG Processing 785/1132 atomic regions from SNP 235394 to 235994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,350 DEBUG Processing 842/1020 atomic regions from SNP 252538 to 253138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,485 DEBUG Processing 786/1132 atomic regions from SNP 235694 to 236294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,652 DEBUG Processing 843/1020 atomic regions from SNP 252838 to 253438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,780 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:46:40,782 DEBUG chr6: Signal quantile: 0.992. signal threshold: 11. Best RMSEA: 0.018 2025-01-31 09:46:40,792 DEBUG Processing 787/1132 atomic regions from SNP 235994 to 236594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,940 DEBUG Processing 844/1020 atomic regions from SNP 253138 to 253738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,070 DEBUG Processing 788/1132 atomic regions from SNP 236294 to 236894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,209 DEBUG Processing 845/1020 atomic regions from SNP 253438 to 254038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,343 DEBUG Processing 789/1132 atomic regions from SNP 236594 to 237194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,475 DEBUG Processing 846/1020 atomic regions from SNP 253738 to 254338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,623 DEBUG Processing 790/1132 atomic regions from SNP 236894 to 237494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,738 DEBUG Processing 847/1020 atomic regions from SNP 254038 to 254638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,891 DEBUG Processing 791/1132 atomic regions from SNP 237194 to 237794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,007 DEBUG Processing 848/1020 atomic regions from SNP 254338 to 254938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,163 DEBUG Processing 792/1132 atomic regions from SNP 237494 to 238094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,277 DEBUG Processing 849/1020 atomic regions from SNP 254638 to 255238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,434 DEBUG Processing 793/1132 atomic regions from SNP 237794 to 238394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,548 DEBUG Processing 850/1020 atomic regions from SNP 254938 to 255538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,704 DEBUG Processing 794/1132 atomic regions from SNP 238094 to 238694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,816 DEBUG Processing 851/1020 atomic regions from SNP 255238 to 255838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,974 DEBUG Processing 795/1132 atomic regions from SNP 238394 to 238994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,087 DEBUG Processing 852/1020 atomic regions from SNP 255538 to 256138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,225 DEBUG Subchromosome time: 269.56961111107375, subchromosome SNPs: 269215 2025-01-31 09:46:43,225 DEBUG Estimated BADs: [0.54, 3.26, 0.82, 3.26, 0.82, 1.63, 0.27, 1.63, 0.16, 1.63, 9.79, 1.63, 0.41, 0.82, 3.26, 11.43, 1.63, 11.43, 3.26, 4.90, 9.79, 0.82, 4.90, 1.63, 3.26, 1.63, 3.26, 1.63, 3.26, 0.82, 0.18, 0.82, 0.23, 0.82, 0.41] SNP counts: [9434, 2730, 14136, 1542, 14806, 16950, 2096, 3911, 10408, 4006, 893, 33603, 6587, 15677, 7000, 4958, 5917, 4258, 6289, 14113, 1509, 11436, 1754, 8016, 3980, 6954, 6638, 7851, 3447, 3638, 3874, 9283, 7209, 6303, 8009] SNP IDs counts: [9434, 2730, 14136, 1542, 14806, 16950, 2096, 3911, 10408, 4006, 893, 33603, 6587, 15677, 7000, 4958, 5917, 4258, 6289, 14113, 1509, 11436, 1754, 8016, 3980, 6954, 6638, 7851, 3447, 3638, 3874, 9283, 7209, 6303, 8009] Critical gap: 694918bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.75Mbp, 10.27Mbp, 19.14Mbp, 20.00Mbp, 28.70Mbp, 38.26Mbp, 39.49Mbp, 41.78Mbp, 48.90Mbp, 51.22Mbp, 51.70Mbp, 71.00Mbp, 74.96Mbp, 84.00Mbp, 87.75Mbp, 90.41Mbp, 94.36Mbp, 96.73Mbp, 100.39Mbp, 108.01Mbp, 108.80Mbp, 115.71Mbp, 116.64Mbp, 121.16Mbp, 123.26Mbp, 127.16Mbp, 130.75Mbp, 135.27Mbp, 137.15Mbp, 139.20Mbp, 141.92Mbp, 147.09Mbp, 151.47Mbp, 154.96Mbp, 160.04Mbp] 2025-01-31 09:46:43,225 DEBUG chr3 time: 269.57015712501016 s 2025-01-31 09:46:43,249 DEBUG Processing 796/1132 atomic regions from SNP 238694 to 239294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,355 DEBUG Processing 853/1020 atomic regions from SNP 255838 to 256438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,373 DEBUG chr3: Fitting background model for 35 segments 2025-01-31 09:46:43,436 DEBUG chr6 total SNP count: 256471 2025-01-31 09:46:43,437 DEBUG chr6 length: 149736546 2025-01-31 09:46:43,437 DEBUG ----------------------------------------- 2025-01-31 09:46:43,437 INFO Processing SNPs in chr6 2025-01-31 09:46:43,519 DEBUG Processing 797/1132 atomic regions from SNP 238994 to 239594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,621 DEBUG Processing 854/1020 atomic regions from SNP 256138 to 256738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,683 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 256471)] 2025-01-31 09:46:43,784 DEBUG Processing 798/1132 atomic regions from SNP 239294 to 239894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,856 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:43,888 DEBUG Processing 855/1020 atomic regions from SNP 256438 to 257038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,053 DEBUG Processing 799/1132 atomic regions from SNP 239594 to 240194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,156 DEBUG Processing 856/1020 atomic regions from SNP 256738 to 257338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,319 DEBUG Processing 800/1132 atomic regions from SNP 239894 to 240494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,422 DEBUG Processing 857/1020 atomic regions from SNP 257038 to 257638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,591 DEBUG Processing 801/1132 atomic regions from SNP 240194 to 240794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,689 DEBUG Processing 858/1020 atomic regions from SNP 257338 to 257938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,858 DEBUG Processing 802/1132 atomic regions from SNP 240494 to 241094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,942 DEBUG Processing 859/1020 atomic regions from SNP 257638 to 258238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,118 DEBUG Processing 803/1132 atomic regions from SNP 240794 to 241394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,192 DEBUG Processing 860/1020 atomic regions from SNP 257938 to 258538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,380 DEBUG Processing 804/1132 atomic regions from SNP 241094 to 241694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,445 DEBUG Processing 861/1020 atomic regions from SNP 258238 to 258838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,649 DEBUG Processing 805/1132 atomic regions from SNP 241394 to 241994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,702 DEBUG Processing 862/1020 atomic regions from SNP 258538 to 259138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,919 DEBUG Processing 806/1132 atomic regions from SNP 241694 to 242294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,956 DEBUG Processing 863/1020 atomic regions from SNP 258838 to 259438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,186 DEBUG Processing 807/1132 atomic regions from SNP 241994 to 242594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,216 DEBUG Processing 864/1020 atomic regions from SNP 259138 to 259738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,463 DEBUG Processing 808/1132 atomic regions from SNP 242294 to 242894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,484 DEBUG Processing 865/1020 atomic regions from SNP 259438 to 260038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,749 DEBUG Processing 809/1132 atomic regions from SNP 242594 to 243194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,754 DEBUG Processing 866/1020 atomic regions from SNP 259738 to 260338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,024 DEBUG Processing 867/1020 atomic regions from SNP 260038 to 260638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,033 DEBUG Processing 810/1132 atomic regions from SNP 242894 to 243494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,297 DEBUG Processing 868/1020 atomic regions from SNP 260338 to 260938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,314 DEBUG Processing 811/1132 atomic regions from SNP 243194 to 243794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,558 DEBUG Processing 869/1020 atomic regions from SNP 260638 to 261238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,588 DEBUG Processing 812/1132 atomic regions from SNP 243494 to 244094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,825 DEBUG Processing 870/1020 atomic regions from SNP 260938 to 261538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,875 DEBUG Processing 813/1132 atomic regions from SNP 243794 to 244394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,098 DEBUG Processing 871/1020 atomic regions from SNP 261238 to 261838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,186 DEBUG Processing 814/1132 atomic regions from SNP 244094 to 244694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,375 DEBUG Processing 872/1020 atomic regions from SNP 261538 to 262138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,469 DEBUG Processing 815/1132 atomic regions from SNP 244394 to 244994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,665 DEBUG Processing 873/1020 atomic regions from SNP 261838 to 262438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,747 DEBUG Processing 816/1132 atomic regions from SNP 244694 to 245294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,936 DEBUG Processing 874/1020 atomic regions from SNP 262138 to 262738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,025 DEBUG Processing 817/1132 atomic regions from SNP 244994 to 245594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,203 DEBUG Processing 875/1020 atomic regions from SNP 262438 to 263038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,310 DEBUG Processing 818/1132 atomic regions from SNP 245294 to 245894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,471 DEBUG Processing 876/1020 atomic regions from SNP 262738 to 263338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,592 DEBUG Processing 819/1132 atomic regions from SNP 245594 to 246194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,740 DEBUG Processing 877/1020 atomic regions from SNP 263038 to 263638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,869 DEBUG Processing 820/1132 atomic regions from SNP 245894 to 246494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,011 DEBUG Processing 878/1020 atomic regions from SNP 263338 to 263938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,147 DEBUG Processing 821/1132 atomic regions from SNP 246194 to 246794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,283 DEBUG Processing 879/1020 atomic regions from SNP 263638 to 264238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,431 DEBUG Processing 822/1132 atomic regions from SNP 246494 to 247094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,571 DEBUG Processing 880/1020 atomic regions from SNP 263938 to 264538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,714 DEBUG Processing 823/1132 atomic regions from SNP 246794 to 247394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,861 DEBUG Processing 881/1020 atomic regions from SNP 264238 to 264838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,981 DEBUG Processing 824/1132 atomic regions from SNP 247094 to 247694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,136 DEBUG Processing 882/1020 atomic regions from SNP 264538 to 265138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,252 DEBUG Processing 825/1132 atomic regions from SNP 247394 to 247994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,427 DEBUG Processing 883/1020 atomic regions from SNP 264838 to 265438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,522 DEBUG Processing 826/1132 atomic regions from SNP 247694 to 248294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,700 DEBUG Processing 884/1020 atomic regions from SNP 265138 to 265738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,798 DEBUG Processing 827/1132 atomic regions from SNP 247994 to 248594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,974 DEBUG Processing 885/1020 atomic regions from SNP 265438 to 266038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,072 DEBUG Processing 828/1132 atomic regions from SNP 248294 to 248894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,261 DEBUG Processing 886/1020 atomic regions from SNP 265738 to 266338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,338 DEBUG Processing 829/1132 atomic regions from SNP 248594 to 249194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,551 DEBUG Processing 887/1020 atomic regions from SNP 266038 to 266638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,608 DEBUG Processing 830/1132 atomic regions from SNP 248894 to 249494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,847 DEBUG Processing 888/1020 atomic regions from SNP 266338 to 266938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,870 DEBUG Processing 831/1132 atomic regions from SNP 249194 to 249794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,124 DEBUG Processing 889/1020 atomic regions from SNP 266638 to 267238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,140 DEBUG Processing 832/1132 atomic regions from SNP 249494 to 250094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,393 DEBUG Processing 890/1020 atomic regions from SNP 266938 to 267538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,416 DEBUG Processing 833/1132 atomic regions from SNP 249794 to 250394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,658 DEBUG Processing 891/1020 atomic regions from SNP 267238 to 267838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,696 DEBUG Processing 834/1132 atomic regions from SNP 250094 to 250694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,928 DEBUG Processing 892/1020 atomic regions from SNP 267538 to 268138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,972 DEBUG Processing 835/1132 atomic regions from SNP 250394 to 250994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,206 DEBUG Processing 893/1020 atomic regions from SNP 267838 to 268438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,244 DEBUG Processing 836/1132 atomic regions from SNP 250694 to 251294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,502 DEBUG Processing 894/1020 atomic regions from SNP 268138 to 268738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,515 DEBUG Processing 837/1132 atomic regions from SNP 250994 to 251594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,789 DEBUG Processing 838/1132 atomic regions from SNP 251294 to 251894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,795 DEBUG Processing 895/1020 atomic regions from SNP 268438 to 269038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,062 DEBUG Processing 839/1132 atomic regions from SNP 251594 to 252194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,068 DEBUG Processing 896/1020 atomic regions from SNP 268738 to 269338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,333 DEBUG Processing 840/1132 atomic regions from SNP 251894 to 252494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,356 DEBUG Processing 897/1020 atomic regions from SNP 269038 to 269638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,600 DEBUG Processing 841/1132 atomic regions from SNP 252194 to 252794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,630 DEBUG Processing 898/1020 atomic regions from SNP 269338 to 269938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,872 DEBUG Processing 842/1132 atomic regions from SNP 252494 to 253094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,907 DEBUG Processing 899/1020 atomic regions from SNP 269638 to 270238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,151 DEBUG Processing 843/1132 atomic regions from SNP 252794 to 253394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,195 DEBUG Processing 900/1020 atomic regions from SNP 269938 to 270538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,422 DEBUG Processing 844/1132 atomic regions from SNP 253094 to 253694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,482 DEBUG Processing 901/1020 atomic regions from SNP 270238 to 270838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,694 DEBUG Processing 845/1132 atomic regions from SNP 253394 to 253994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,770 DEBUG Processing 902/1020 atomic regions from SNP 270538 to 271138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,967 DEBUG Processing 846/1132 atomic regions from SNP 253694 to 254294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,049 DEBUG Processing 903/1020 atomic regions from SNP 270838 to 271438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,244 DEBUG Processing 847/1132 atomic regions from SNP 253994 to 254594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,331 DEBUG Processing 904/1020 atomic regions from SNP 271138 to 271738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,527 DEBUG Processing 848/1132 atomic regions from SNP 254294 to 254894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,613 DEBUG Processing 905/1020 atomic regions from SNP 271438 to 272038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,802 DEBUG Processing 849/1132 atomic regions from SNP 254594 to 255194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,871 DEBUG Processing 906/1020 atomic regions from SNP 271738 to 272338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,070 DEBUG Processing 850/1132 atomic regions from SNP 254894 to 255494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,144 DEBUG Processing 907/1020 atomic regions from SNP 272038 to 272638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,341 DEBUG Processing 851/1132 atomic regions from SNP 255194 to 255794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,432 DEBUG Processing 908/1020 atomic regions from SNP 272338 to 272938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,606 DEBUG Processing 852/1132 atomic regions from SNP 255494 to 256094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,719 DEBUG Processing 909/1020 atomic regions from SNP 272638 to 273238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,871 DEBUG Processing 853/1132 atomic regions from SNP 255794 to 256394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,010 DEBUG Processing 910/1020 atomic regions from SNP 272938 to 273538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,143 DEBUG Processing 854/1132 atomic regions from SNP 256094 to 256694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,290 DEBUG Processing 911/1020 atomic regions from SNP 273238 to 273838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,409 DEBUG Processing 855/1132 atomic regions from SNP 256394 to 256994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,574 DEBUG Processing 912/1020 atomic regions from SNP 273538 to 274138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,675 DEBUG Processing 856/1132 atomic regions from SNP 256694 to 257294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,857 DEBUG Processing 913/1020 atomic regions from SNP 273838 to 274438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,948 DEBUG Processing 857/1132 atomic regions from SNP 256994 to 257594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,119 DEBUG Processing 914/1020 atomic regions from SNP 274138 to 274738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,220 DEBUG Processing 858/1132 atomic regions from SNP 257294 to 257894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,380 DEBUG Processing 915/1020 atomic regions from SNP 274438 to 275038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,492 DEBUG Processing 859/1132 atomic regions from SNP 257594 to 258194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,652 DEBUG Processing 916/1020 atomic regions from SNP 274738 to 275338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,766 DEBUG Processing 860/1132 atomic regions from SNP 257894 to 258494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,929 DEBUG Processing 917/1020 atomic regions from SNP 275038 to 275638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,033 DEBUG Processing 861/1132 atomic regions from SNP 258194 to 258794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,204 DEBUG Processing 918/1020 atomic regions from SNP 275338 to 275938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,304 DEBUG Processing 862/1132 atomic regions from SNP 258494 to 259094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,472 DEBUG Processing 919/1020 atomic regions from SNP 275638 to 276238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,581 DEBUG Processing 863/1132 atomic regions from SNP 258794 to 259394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,743 DEBUG Processing 920/1020 atomic regions from SNP 275938 to 276538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,876 DEBUG Processing 864/1132 atomic regions from SNP 259094 to 259694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,008 DEBUG Processing 921/1020 atomic regions from SNP 276238 to 276838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,162 DEBUG Processing 865/1132 atomic regions from SNP 259394 to 259994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,273 DEBUG Processing 922/1020 atomic regions from SNP 276538 to 277138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,439 DEBUG Processing 866/1132 atomic regions from SNP 259694 to 260294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,533 DEBUG Processing 923/1020 atomic regions from SNP 276838 to 277438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,708 DEBUG Processing 867/1132 atomic regions from SNP 259994 to 260594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,794 DEBUG Processing 924/1020 atomic regions from SNP 277138 to 277738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,983 DEBUG Processing 868/1132 atomic regions from SNP 260294 to 260894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,052 DEBUG Processing 925/1020 atomic regions from SNP 277438 to 278038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,252 DEBUG Processing 869/1132 atomic regions from SNP 260594 to 261194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,310 DEBUG Processing 926/1020 atomic regions from SNP 277738 to 278338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,517 DEBUG Processing 870/1132 atomic regions from SNP 260894 to 261494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,566 DEBUG Processing 927/1020 atomic regions from SNP 278038 to 278638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,779 DEBUG Processing 871/1132 atomic regions from SNP 261194 to 261794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,824 DEBUG Processing 928/1020 atomic regions from SNP 278338 to 278938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,042 DEBUG Processing 872/1132 atomic regions from SNP 261494 to 262094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,084 DEBUG Processing 929/1020 atomic regions from SNP 278638 to 279238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,312 DEBUG Processing 873/1132 atomic regions from SNP 261794 to 262394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,351 DEBUG Processing 930/1020 atomic regions from SNP 278938 to 279538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,588 DEBUG Processing 874/1132 atomic regions from SNP 262094 to 262694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,619 DEBUG Processing 931/1020 atomic regions from SNP 279238 to 279838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,880 DEBUG Processing 875/1132 atomic regions from SNP 262394 to 262994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,901 DEBUG Processing 932/1020 atomic regions from SNP 279538 to 280138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,168 DEBUG Processing 876/1132 atomic regions from SNP 262694 to 263294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,178 DEBUG Processing 933/1020 atomic regions from SNP 279838 to 280438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,447 DEBUG Processing 934/1020 atomic regions from SNP 280138 to 280738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,453 DEBUG Processing 877/1132 atomic regions from SNP 262994 to 263594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,710 DEBUG Processing 935/1020 atomic regions from SNP 280438 to 281038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,732 DEBUG Processing 878/1132 atomic regions from SNP 263294 to 263894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,967 DEBUG Processing 936/1020 atomic regions from SNP 280738 to 281338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,002 DEBUG Processing 879/1132 atomic regions from SNP 263594 to 264194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,228 DEBUG Processing 937/1020 atomic regions from SNP 281038 to 281638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,272 DEBUG Processing 880/1132 atomic regions from SNP 263894 to 264494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,489 DEBUG Processing 938/1020 atomic regions from SNP 281338 to 281938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,553 DEBUG Processing 881/1132 atomic regions from SNP 264194 to 264794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,756 DEBUG Processing 939/1020 atomic regions from SNP 281638 to 282238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,841 DEBUG Processing 882/1132 atomic regions from SNP 264494 to 265094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,013 DEBUG Processing 940/1020 atomic regions from SNP 281938 to 282538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,103 DEBUG Processing 883/1132 atomic regions from SNP 264794 to 265394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,267 DEBUG Processing 941/1020 atomic regions from SNP 282238 to 282838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,367 DEBUG Processing 884/1132 atomic regions from SNP 265094 to 265694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,522 DEBUG Processing 942/1020 atomic regions from SNP 282538 to 283138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,630 DEBUG Processing 885/1132 atomic regions from SNP 265394 to 265994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,778 DEBUG Processing 943/1020 atomic regions from SNP 282838 to 283438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,898 DEBUG Processing 886/1132 atomic regions from SNP 265694 to 266294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,030 DEBUG Processing 944/1020 atomic regions from SNP 283138 to 283738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,179 DEBUG Processing 887/1132 atomic regions from SNP 265994 to 266594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,287 DEBUG Processing 945/1020 atomic regions from SNP 283438 to 284038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,489 DEBUG Processing 888/1132 atomic regions from SNP 266294 to 266894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,542 DEBUG Processing 946/1020 atomic regions from SNP 283738 to 284338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,804 DEBUG Processing 947/1020 atomic regions from SNP 284038 to 284638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,805 DEBUG Processing 889/1132 atomic regions from SNP 266594 to 267194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,064 DEBUG Processing 948/1020 atomic regions from SNP 284338 to 284938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,096 DEBUG Processing 890/1132 atomic regions from SNP 266894 to 267494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,336 DEBUG Processing 949/1020 atomic regions from SNP 284638 to 285238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,391 DEBUG Processing 891/1132 atomic regions from SNP 267194 to 267794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,611 DEBUG Processing 950/1020 atomic regions from SNP 284938 to 285538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,685 DEBUG Processing 892/1132 atomic regions from SNP 267494 to 268094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,888 DEBUG Processing 951/1020 atomic regions from SNP 285238 to 285838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,983 DEBUG Processing 893/1132 atomic regions from SNP 267794 to 268394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,147 DEBUG Processing 952/1020 atomic regions from SNP 285538 to 286138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,284 DEBUG Processing 894/1132 atomic regions from SNP 268094 to 268694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,397 DEBUG Processing 953/1020 atomic regions from SNP 285838 to 286438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,595 DEBUG Processing 895/1132 atomic regions from SNP 268394 to 268994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,653 DEBUG Processing 954/1020 atomic regions from SNP 286138 to 286738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,890 DEBUG Processing 896/1132 atomic regions from SNP 268694 to 269294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,916 DEBUG Processing 955/1020 atomic regions from SNP 286438 to 287038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,189 DEBUG Processing 956/1020 atomic regions from SNP 286738 to 287338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,193 DEBUG Processing 897/1132 atomic regions from SNP 268994 to 269594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,476 DEBUG Processing 957/1020 atomic regions from SNP 287038 to 287638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,500 DEBUG Processing 898/1132 atomic regions from SNP 269294 to 269894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,776 DEBUG Processing 958/1020 atomic regions from SNP 287338 to 287938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,806 DEBUG Processing 899/1132 atomic regions from SNP 269594 to 270194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,061 DEBUG Processing 959/1020 atomic regions from SNP 287638 to 288238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,106 DEBUG Processing 900/1132 atomic regions from SNP 269894 to 270494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,328 DEBUG Processing 960/1020 atomic regions from SNP 287938 to 288538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,402 DEBUG Processing 901/1132 atomic regions from SNP 270194 to 270794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,602 DEBUG Processing 961/1020 atomic regions from SNP 288238 to 288838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,678 DEBUG Processing 902/1132 atomic regions from SNP 270494 to 271094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,867 DEBUG Processing 962/1020 atomic regions from SNP 288538 to 289138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,958 DEBUG Processing 903/1132 atomic regions from SNP 270794 to 271394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,126 DEBUG Processing 963/1020 atomic regions from SNP 288838 to 289438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,243 DEBUG Processing 904/1132 atomic regions from SNP 271094 to 271694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,405 DEBUG Processing 964/1020 atomic regions from SNP 289138 to 289738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,521 DEBUG Processing 905/1132 atomic regions from SNP 271394 to 271994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,699 DEBUG Processing 965/1020 atomic regions from SNP 289438 to 290038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,800 DEBUG Processing 906/1132 atomic regions from SNP 271694 to 272294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,976 DEBUG Processing 966/1020 atomic regions from SNP 289738 to 290338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,071 DEBUG Processing 907/1132 atomic regions from SNP 271994 to 272594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,234 DEBUG Processing 967/1020 atomic regions from SNP 290038 to 290638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,342 DEBUG Processing 908/1132 atomic regions from SNP 272294 to 272894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,497 DEBUG Processing 968/1020 atomic regions from SNP 290338 to 290938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,610 DEBUG Processing 909/1132 atomic regions from SNP 272594 to 273194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,737 DEBUG Segmenting atomic regions: 2025-01-31 09:47:14,758 DEBUG Processing 969/1020 atomic regions from SNP 290638 to 291238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,846 DEBUG Processing 1/853 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,876 DEBUG Processing 910/1132 atomic regions from SNP 272894 to 273494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,031 DEBUG Processing 970/1020 atomic regions from SNP 290938 to 291538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,078 DEBUG Processing 2/853 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,145 DEBUG Processing 911/1132 atomic regions from SNP 273194 to 273794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,304 DEBUG Processing 971/1020 atomic regions from SNP 291238 to 291838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,316 DEBUG Processing 3/853 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,421 DEBUG Processing 912/1132 atomic regions from SNP 273494 to 274094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,554 DEBUG Processing 4/853 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,587 DEBUG Processing 972/1020 atomic regions from SNP 291538 to 292138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,697 DEBUG Processing 913/1132 atomic regions from SNP 273794 to 274394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,785 DEBUG Processing 5/853 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,863 DEBUG Processing 973/1020 atomic regions from SNP 291838 to 292438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,978 DEBUG Processing 914/1132 atomic regions from SNP 274094 to 274694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,018 DEBUG Processing 6/853 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,146 DEBUG Processing 974/1020 atomic regions from SNP 292138 to 292738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,248 DEBUG Processing 7/853 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,258 DEBUG Processing 915/1132 atomic regions from SNP 274394 to 274994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,440 DEBUG Processing 975/1020 atomic regions from SNP 292438 to 293038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,481 DEBUG Processing 8/853 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,533 DEBUG Processing 916/1132 atomic regions from SNP 274694 to 275294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,714 DEBUG Processing 9/853 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,734 DEBUG Processing 976/1020 atomic regions from SNP 292738 to 293338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,803 DEBUG Processing 917/1132 atomic regions from SNP 274994 to 275594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,950 DEBUG Processing 10/853 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,018 DEBUG Processing 977/1020 atomic regions from SNP 293038 to 293638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,075 DEBUG Processing 918/1132 atomic regions from SNP 275294 to 275894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,200 DEBUG Processing 11/853 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,325 DEBUG Processing 978/1020 atomic regions from SNP 293338 to 293938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,352 DEBUG Processing 919/1132 atomic regions from SNP 275594 to 276194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,443 DEBUG Processing 12/853 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,618 DEBUG Processing 979/1020 atomic regions from SNP 293638 to 294238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,651 DEBUG Processing 920/1132 atomic regions from SNP 275894 to 276494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,690 DEBUG Processing 13/853 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,871 DEBUG Processing 980/1020 atomic regions from SNP 293938 to 294538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,940 DEBUG Processing 14/853 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,940 DEBUG Processing 921/1132 atomic regions from SNP 276194 to 276794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,119 DEBUG Processing 981/1020 atomic regions from SNP 294238 to 294838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,165 DEBUG Processing 15/853 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,204 DEBUG Processing 922/1132 atomic regions from SNP 276494 to 277094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,368 DEBUG Processing 982/1020 atomic regions from SNP 294538 to 295138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,392 DEBUG Processing 16/853 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,479 DEBUG Processing 923/1132 atomic regions from SNP 276794 to 277394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,620 DEBUG Processing 983/1020 atomic regions from SNP 294838 to 295438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,622 DEBUG Processing 17/853 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,781 DEBUG Processing 924/1132 atomic regions from SNP 277094 to 277694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,859 DEBUG Processing 18/853 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,871 DEBUG Processing 984/1020 atomic regions from SNP 295138 to 295738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,090 DEBUG Processing 925/1132 atomic regions from SNP 277394 to 277994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,101 DEBUG Processing 19/853 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,125 DEBUG Processing 985/1020 atomic regions from SNP 295438 to 296038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,336 DEBUG Processing 20/853 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,377 DEBUG Processing 986/1020 atomic regions from SNP 295738 to 296338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,387 DEBUG Processing 926/1132 atomic regions from SNP 277694 to 278294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,566 DEBUG Processing 21/853 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,642 DEBUG Processing 987/1020 atomic regions from SNP 296038 to 296638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,687 DEBUG Processing 927/1132 atomic regions from SNP 277994 to 278594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,790 DEBUG Processing 22/853 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,905 DEBUG Processing 988/1020 atomic regions from SNP 296338 to 296938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,963 DEBUG Processing 928/1132 atomic regions from SNP 278294 to 278894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,017 DEBUG Processing 23/853 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,175 DEBUG Processing 989/1020 atomic regions from SNP 296638 to 297238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,247 DEBUG Processing 929/1132 atomic regions from SNP 278594 to 279194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,254 DEBUG Processing 24/853 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,441 DEBUG Processing 990/1020 atomic regions from SNP 296938 to 297538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,516 DEBUG Processing 25/853 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,555 DEBUG Processing 930/1132 atomic regions from SNP 278894 to 279494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,721 DEBUG Processing 991/1020 atomic regions from SNP 297238 to 297838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,758 DEBUG Processing 26/853 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,848 DEBUG Processing 931/1132 atomic regions from SNP 279194 to 279794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,996 DEBUG Processing 27/853 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,011 DEBUG Processing 992/1020 atomic regions from SNP 297538 to 298138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,132 DEBUG Processing 932/1132 atomic regions from SNP 279494 to 280094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,240 DEBUG Processing 28/853 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,271 DEBUG Processing 993/1020 atomic regions from SNP 297838 to 298438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,411 DEBUG Processing 933/1132 atomic regions from SNP 279794 to 280394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,479 DEBUG Processing 29/853 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,548 DEBUG Processing 994/1020 atomic regions from SNP 298138 to 298738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,689 DEBUG Processing 934/1132 atomic regions from SNP 280094 to 280694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,711 DEBUG Processing 30/853 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,801 DEBUG Processing 995/1020 atomic regions from SNP 298438 to 299038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,955 DEBUG Processing 31/853 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,992 DEBUG Processing 935/1132 atomic regions from SNP 280394 to 280994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,058 DEBUG Processing 996/1020 atomic regions from SNP 298738 to 299338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,215 DEBUG Processing 32/853 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,265 DEBUG Processing 936/1132 atomic regions from SNP 280694 to 281294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,308 DEBUG Processing 997/1020 atomic regions from SNP 299038 to 299638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,455 DEBUG Processing 33/853 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,527 DEBUG Processing 937/1132 atomic regions from SNP 280994 to 281594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,559 DEBUG Processing 998/1020 atomic regions from SNP 299338 to 299938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,697 DEBUG Processing 34/853 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,788 DEBUG Processing 938/1132 atomic regions from SNP 281294 to 281894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,816 DEBUG Processing 999/1020 atomic regions from SNP 299638 to 300238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,934 DEBUG Processing 35/853 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,056 DEBUG Processing 939/1132 atomic regions from SNP 281594 to 282194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,079 DEBUG Processing 1000/1020 atomic regions from SNP 299938 to 300538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,172 DEBUG Processing 36/853 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,332 DEBUG Processing 940/1132 atomic regions from SNP 281894 to 282494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,351 DEBUG Processing 1001/1020 atomic regions from SNP 300238 to 300838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,407 DEBUG Processing 37/853 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,623 DEBUG Processing 941/1132 atomic regions from SNP 282194 to 282794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,629 DEBUG Processing 1002/1020 atomic regions from SNP 300538 to 301138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,644 DEBUG Processing 38/853 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,874 DEBUG Processing 39/853 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,900 DEBUG Processing 1003/1020 atomic regions from SNP 300838 to 301438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,906 DEBUG Processing 942/1132 atomic regions from SNP 282494 to 283094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,108 DEBUG Processing 40/853 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,171 DEBUG Processing 1004/1020 atomic regions from SNP 301138 to 301738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,184 DEBUG Processing 943/1132 atomic regions from SNP 282794 to 283394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,335 DEBUG Processing 41/853 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,463 DEBUG Processing 944/1132 atomic regions from SNP 283094 to 283694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,468 DEBUG Processing 1005/1020 atomic regions from SNP 301438 to 302038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,561 DEBUG Processing 42/853 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,753 DEBUG Processing 1006/1020 atomic regions from SNP 301738 to 302338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,760 DEBUG Processing 945/1132 atomic regions from SNP 283394 to 283994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,808 DEBUG Processing 43/853 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,028 DEBUG Processing 1007/1020 atomic regions from SNP 302038 to 302638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,039 DEBUG Processing 44/853 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,053 DEBUG Processing 946/1132 atomic regions from SNP 283694 to 284294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,272 DEBUG Processing 45/853 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,300 DEBUG Processing 1008/1020 atomic regions from SNP 302338 to 302938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,332 DEBUG Processing 947/1132 atomic regions from SNP 283994 to 284594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,500 DEBUG Processing 46/853 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,597 DEBUG Processing 1009/1020 atomic regions from SNP 302638 to 303238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,623 DEBUG Processing 948/1132 atomic regions from SNP 284294 to 284894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,729 DEBUG Processing 47/853 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,888 DEBUG Processing 1010/1020 atomic regions from SNP 302938 to 303538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,908 DEBUG Processing 949/1132 atomic regions from SNP 284594 to 285194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,955 DEBUG Processing 48/853 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,160 DEBUG Processing 1011/1020 atomic regions from SNP 303238 to 303838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,183 DEBUG Processing 49/853 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,209 DEBUG Processing 950/1132 atomic regions from SNP 284894 to 285494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,416 DEBUG Processing 50/853 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,424 DEBUG Processing 1012/1020 atomic regions from SNP 303538 to 304138 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,511 DEBUG Processing 951/1132 atomic regions from SNP 285194 to 285794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,655 DEBUG Processing 51/853 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,688 DEBUG Processing 1013/1020 atomic regions from SNP 303838 to 304438 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,812 DEBUG Processing 952/1132 atomic regions from SNP 285494 to 286094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,891 DEBUG Processing 52/853 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,949 DEBUG Processing 1014/1020 atomic regions from SNP 304138 to 304738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,116 DEBUG Processing 953/1132 atomic regions from SNP 285794 to 286394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,129 DEBUG Processing 53/853 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,210 DEBUG Processing 1015/1020 atomic regions from SNP 304438 to 305038 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,359 DEBUG Processing 54/853 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,433 DEBUG Processing 954/1132 atomic regions from SNP 286094 to 286694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,473 DEBUG Processing 1016/1020 atomic regions from SNP 304738 to 305338 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,580 DEBUG Processing 55/853 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,741 DEBUG Processing 955/1132 atomic regions from SNP 286394 to 286994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,750 DEBUG Processing 1017/1020 atomic regions from SNP 305038 to 305638 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,799 DEBUG Processing 56/853 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,026 DEBUG Processing 57/853 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,032 DEBUG Processing 1018/1020 atomic regions from SNP 305338 to 305938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,036 DEBUG Processing 956/1132 atomic regions from SNP 286694 to 287294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,272 DEBUG Processing 58/853 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,302 DEBUG Processing 1019/1020 atomic regions from SNP 305638 to 306238 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,313 DEBUG Processing 957/1132 atomic regions from SNP 286994 to 287594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,501 DEBUG Processing 59/853 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,579 DEBUG Processing 1020/1020 atomic regions from SNP 305938 to 306538 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,601 DEBUG Processing 958/1132 atomic regions from SNP 287294 to 287894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,728 DEBUG Unique SNPs positions in subchromosome 1: 306539 2025-01-31 09:47:28,728 DEBUG Processing 60/853 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,885 DEBUG Processing 959/1132 atomic regions from SNP 287594 to 288194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,967 DEBUG Processing 61/853 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,154 DEBUG Processing 960/1132 atomic regions from SNP 287894 to 288494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,195 DEBUG Processing 62/853 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,427 DEBUG Processing 63/853 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,430 DEBUG Processing 961/1132 atomic regions from SNP 288194 to 288794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,664 DEBUG Processing 64/853 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,704 DEBUG Processing 962/1132 atomic regions from SNP 288494 to 289094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,898 DEBUG Processing 65/853 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,000 DEBUG Processing 963/1132 atomic regions from SNP 288794 to 289394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,137 DEBUG Processing 66/853 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,296 DEBUG Processing 964/1132 atomic regions from SNP 289094 to 289694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,379 DEBUG Processing 67/853 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,569 DEBUG Processing 965/1132 atomic regions from SNP 289394 to 289994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,622 DEBUG Processing 68/853 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,841 DEBUG Processing 966/1132 atomic regions from SNP 289694 to 290294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,868 DEBUG Processing 69/853 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,104 DEBUG Processing 70/853 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,106 DEBUG Processing 967/1132 atomic regions from SNP 289994 to 290594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,342 DEBUG Processing 71/853 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,370 DEBUG Processing 968/1132 atomic regions from SNP 290294 to 290894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,590 DEBUG Processing 72/853 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,674 DEBUG Processing 969/1132 atomic regions from SNP 290594 to 291194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,831 DEBUG Processing 73/853 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,964 DEBUG Processing 970/1132 atomic regions from SNP 290894 to 291494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,067 DEBUG Processing 74/853 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,233 DEBUG Processing 971/1132 atomic regions from SNP 291194 to 291794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,306 DEBUG Processing 75/853 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,508 DEBUG Processing 972/1132 atomic regions from SNP 291494 to 292094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,543 DEBUG Processing 76/853 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,771 DEBUG Processing 77/853 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,774 DEBUG Processing 973/1132 atomic regions from SNP 291794 to 292394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,000 DEBUG Processing 78/853 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,046 DEBUG Processing 974/1132 atomic regions from SNP 292094 to 292694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,237 DEBUG Processing 79/853 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,318 DEBUG Processing 975/1132 atomic regions from SNP 292394 to 292994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,477 DEBUG Processing 80/853 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,589 DEBUG Processing 976/1132 atomic regions from SNP 292694 to 293294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,718 DEBUG Processing 81/853 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,859 DEBUG Processing 977/1132 atomic regions from SNP 292994 to 293594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,955 DEBUG Processing 82/853 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,128 DEBUG Processing 978/1132 atomic regions from SNP 293294 to 293894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,194 DEBUG Processing 83/853 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,397 DEBUG Processing 979/1132 atomic regions from SNP 293594 to 294194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,440 DEBUG Processing 84/853 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,673 DEBUG Processing 980/1132 atomic regions from SNP 293894 to 294494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,675 DEBUG Processing 85/853 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,916 DEBUG Processing 86/853 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,961 DEBUG Processing 981/1132 atomic regions from SNP 294194 to 294794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,154 DEBUG Processing 87/853 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,235 DEBUG Processing 982/1132 atomic regions from SNP 294494 to 295094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,399 DEBUG Processing 88/853 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,508 DEBUG Processing 983/1132 atomic regions from SNP 294794 to 295394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,628 DEBUG Processing 89/853 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,771 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:47:35,776 DEBUG Processing 984/1132 atomic regions from SNP 295094 to 295694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,853 DEBUG Processing 90/853 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,069 DEBUG Processing 985/1132 atomic regions from SNP 295394 to 295994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,086 DEBUG Processing 91/853 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,316 DEBUG Processing 92/853 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,379 DEBUG Processing 986/1132 atomic regions from SNP 295694 to 296294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,540 DEBUG Processing 93/853 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,694 DEBUG Processing 987/1132 atomic regions from SNP 295994 to 296594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,766 DEBUG Processing 94/853 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,996 DEBUG Processing 95/853 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,997 DEBUG Processing 988/1132 atomic regions from SNP 296294 to 296894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,198 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:47:37,232 DEBUG Processing 96/853 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,300 DEBUG Processing 989/1132 atomic regions from SNP 296594 to 297194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,476 DEBUG Processing 97/853 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,575 DEBUG Processing 990/1132 atomic regions from SNP 296894 to 297494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,713 DEBUG Processing 98/853 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,856 DEBUG Processing 991/1132 atomic regions from SNP 297194 to 297794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,946 DEBUG Processing 99/853 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,142 DEBUG Processing 992/1132 atomic regions from SNP 297494 to 298094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,186 DEBUG Processing 100/853 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,414 DEBUG Processing 101/853 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,442 DEBUG Processing 993/1132 atomic regions from SNP 297794 to 298394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,636 DEBUG Processing 102/853 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,737 DEBUG Processing 994/1132 atomic regions from SNP 298094 to 298694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,859 DEBUG Processing 103/853 atomic regions from SNP 30702 to 31303 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,002 DEBUG Processing 995/1132 atomic regions from SNP 298394 to 298994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,086 DEBUG Processing 104/853 atomic regions from SNP 31003 to 31604 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,263 DEBUG Processing 996/1132 atomic regions from SNP 298694 to 299294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,308 DEBUG Processing 105/853 atomic regions from SNP 31304 to 31905 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,527 DEBUG Processing 997/1132 atomic regions from SNP 298994 to 299594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,534 DEBUG Processing 106/853 atomic regions from SNP 31605 to 32206 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,755 DEBUG Processing 107/853 atomic regions from SNP 31906 to 32507 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,791 DEBUG Processing 998/1132 atomic regions from SNP 299294 to 299894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,913 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:47:39,977 DEBUG Processing 108/853 atomic regions from SNP 32207 to 32808 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,050 DEBUG Processing 999/1132 atomic regions from SNP 299594 to 300194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,210 DEBUG Processing 109/853 atomic regions from SNP 32508 to 33109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,310 DEBUG Processing 1000/1132 atomic regions from SNP 299894 to 300494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,445 DEBUG Processing 110/853 atomic regions from SNP 32809 to 33410 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,572 DEBUG Processing 1001/1132 atomic regions from SNP 300194 to 300794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,679 DEBUG Processing 111/853 atomic regions from SNP 33110 to 33711 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,845 DEBUG Processing 1002/1132 atomic regions from SNP 300494 to 301094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,913 DEBUG Processing 112/853 atomic regions from SNP 33411 to 34012 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,120 DEBUG Processing 1003/1132 atomic regions from SNP 300794 to 301394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,148 DEBUG Processing 113/853 atomic regions from SNP 33712 to 34313 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,376 DEBUG Processing 114/853 atomic regions from SNP 34013 to 34614 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,388 DEBUG Processing 1004/1132 atomic regions from SNP 301094 to 301694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,613 DEBUG Processing 115/853 atomic regions from SNP 34314 to 34915 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,662 DEBUG Processing 1005/1132 atomic regions from SNP 301394 to 301994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,855 DEBUG Processing 116/853 atomic regions from SNP 34615 to 35216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,948 DEBUG Processing 1006/1132 atomic regions from SNP 301694 to 302294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,089 DEBUG Processing 117/853 atomic regions from SNP 34916 to 35517 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,224 DEBUG Processing 1007/1132 atomic regions from SNP 301994 to 302594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,315 DEBUG Processing 118/853 atomic regions from SNP 35217 to 35818 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,500 DEBUG Processing 1008/1132 atomic regions from SNP 302294 to 302894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,542 DEBUG Processing 119/853 atomic regions from SNP 35518 to 36119 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,774 DEBUG Processing 1009/1132 atomic regions from SNP 302594 to 303194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,775 DEBUG Processing 120/853 atomic regions from SNP 35819 to 36420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,006 DEBUG Processing 121/853 atomic regions from SNP 36120 to 36721 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,048 DEBUG Processing 1010/1132 atomic regions from SNP 302894 to 303494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,232 DEBUG Processing 122/853 atomic regions from SNP 36421 to 37022 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,325 DEBUG Processing 1011/1132 atomic regions from SNP 303194 to 303794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,462 DEBUG Processing 123/853 atomic regions from SNP 36722 to 37323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,674 DEBUG Processing 1012/1132 atomic regions from SNP 303494 to 304094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,762 DEBUG Processing 124/853 atomic regions from SNP 37023 to 37624 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,990 DEBUG Processing 1013/1132 atomic regions from SNP 303794 to 304394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,131 DEBUG Processing 125/853 atomic regions from SNP 37324 to 37925 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,294 DEBUG Processing 1014/1132 atomic regions from SNP 304094 to 304694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,414 DEBUG Processing 126/853 atomic regions from SNP 37625 to 38226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,571 DEBUG Processing 1015/1132 atomic regions from SNP 304394 to 304994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,660 DEBUG Processing 127/853 atomic regions from SNP 37926 to 38527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,835 DEBUG Processing 1016/1132 atomic regions from SNP 304694 to 305294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,891 DEBUG Processing 128/853 atomic regions from SNP 38227 to 38828 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,091 DEBUG Processing 1017/1132 atomic regions from SNP 304994 to 305594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,118 DEBUG Processing 129/853 atomic regions from SNP 38528 to 39129 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,354 DEBUG Processing 1018/1132 atomic regions from SNP 305294 to 305894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,354 DEBUG Processing 130/853 atomic regions from SNP 38829 to 39430 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,589 DEBUG Processing 131/853 atomic regions from SNP 39130 to 39731 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,627 DEBUG Processing 1019/1132 atomic regions from SNP 305594 to 306194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,817 DEBUG Processing 132/853 atomic regions from SNP 39431 to 40032 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,906 DEBUG Processing 1020/1132 atomic regions from SNP 305894 to 306494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,037 DEBUG Processing 133/853 atomic regions from SNP 39732 to 40333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,194 DEBUG Processing 1021/1132 atomic regions from SNP 306194 to 306794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,264 DEBUG Processing 134/853 atomic regions from SNP 40033 to 40634 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,478 DEBUG Processing 1022/1132 atomic regions from SNP 306494 to 307094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,492 DEBUG Processing 135/853 atomic regions from SNP 40334 to 40935 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,721 DEBUG Processing 136/853 atomic regions from SNP 40635 to 41236 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,753 DEBUG Processing 1023/1132 atomic regions from SNP 306794 to 307394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,948 DEBUG Processing 137/853 atomic regions from SNP 40936 to 41537 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,021 DEBUG Processing 1024/1132 atomic regions from SNP 307094 to 307694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,178 DEBUG Processing 138/853 atomic regions from SNP 41237 to 41838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,289 DEBUG Processing 1025/1132 atomic regions from SNP 307394 to 307994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,405 DEBUG Processing 139/853 atomic regions from SNP 41538 to 42139 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,550 DEBUG Processing 1026/1132 atomic regions from SNP 307694 to 308294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,629 DEBUG Processing 140/853 atomic regions from SNP 41839 to 42440 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,810 DEBUG Processing 1027/1132 atomic regions from SNP 307994 to 308594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,849 DEBUG Processing 141/853 atomic regions from SNP 42140 to 42741 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,068 DEBUG Processing 142/853 atomic regions from SNP 42441 to 43042 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,086 DEBUG Processing 1028/1132 atomic regions from SNP 308294 to 308894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,300 DEBUG Processing 143/853 atomic regions from SNP 42742 to 43343 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,389 DEBUG Processing 1029/1132 atomic regions from SNP 308594 to 309194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,550 DEBUG Processing 144/853 atomic regions from SNP 43043 to 43644 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,671 DEBUG Processing 1030/1132 atomic regions from SNP 308894 to 309494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,774 DEBUG Processing 145/853 atomic regions from SNP 43344 to 43945 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,923 DEBUG Processing 1031/1132 atomic regions from SNP 309194 to 309794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,999 DEBUG Processing 146/853 atomic regions from SNP 43645 to 44246 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,180 DEBUG Processing 1032/1132 atomic regions from SNP 309494 to 310094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,225 DEBUG Processing 147/853 atomic regions from SNP 43946 to 44547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,444 DEBUG Processing 1033/1132 atomic regions from SNP 309794 to 310394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,455 DEBUG Processing 148/853 atomic regions from SNP 44247 to 44848 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,711 DEBUG Processing 1034/1132 atomic regions from SNP 310094 to 310694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,715 DEBUG Processing 149/853 atomic regions from SNP 44548 to 45149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,973 DEBUG Processing 150/853 atomic regions from SNP 44849 to 45450 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,983 DEBUG Processing 1035/1132 atomic regions from SNP 310394 to 310994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,223 DEBUG Processing 151/853 atomic regions from SNP 45150 to 45751 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,270 DEBUG Processing 1036/1132 atomic regions from SNP 310694 to 311294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,472 DEBUG Processing 152/853 atomic regions from SNP 45451 to 46052 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,569 DEBUG Processing 1037/1132 atomic regions from SNP 310994 to 311594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,710 DEBUG Processing 153/853 atomic regions from SNP 45752 to 46353 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,870 DEBUG Processing 1038/1132 atomic regions from SNP 311294 to 311894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,946 DEBUG Processing 154/853 atomic regions from SNP 46053 to 46654 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,154 DEBUG Processing 1039/1132 atomic regions from SNP 311594 to 312194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,200 DEBUG Processing 155/853 atomic regions from SNP 46354 to 46955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,440 DEBUG Processing 1040/1132 atomic regions from SNP 311894 to 312494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,464 DEBUG Processing 156/853 atomic regions from SNP 46655 to 47256 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,708 DEBUG Processing 157/853 atomic regions from SNP 46956 to 47557 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,743 DEBUG Processing 1041/1132 atomic regions from SNP 312194 to 312794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,941 DEBUG Processing 158/853 atomic regions from SNP 47257 to 47858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,042 DEBUG Processing 1042/1132 atomic regions from SNP 312494 to 313094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,171 DEBUG Processing 159/853 atomic regions from SNP 47558 to 48159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,335 DEBUG Processing 1043/1132 atomic regions from SNP 312794 to 313394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,380 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:47:52,382 DEBUG chr10: Signal quantile: 0.990. signal threshold: 11. Best RMSEA: 0.016 2025-01-31 09:47:52,404 DEBUG Processing 160/853 atomic regions from SNP 47859 to 48460 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,635 DEBUG Processing 1044/1132 atomic regions from SNP 313094 to 313694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,646 DEBUG Processing 161/853 atomic regions from SNP 48160 to 48761 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,878 DEBUG Processing 162/853 atomic regions from SNP 48461 to 49062 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,940 DEBUG Processing 1045/1132 atomic regions from SNP 313394 to 313994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,120 DEBUG Processing 163/853 atomic regions from SNP 48762 to 49363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,247 DEBUG Processing 1046/1132 atomic regions from SNP 313694 to 314294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,374 DEBUG Processing 164/853 atomic regions from SNP 49063 to 49664 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,551 DEBUG Processing 1047/1132 atomic regions from SNP 313994 to 314594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,607 DEBUG Processing 165/853 atomic regions from SNP 49364 to 49965 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,840 DEBUG Processing 166/853 atomic regions from SNP 49665 to 50266 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,846 DEBUG Processing 1048/1132 atomic regions from SNP 314294 to 314894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,068 DEBUG Processing 167/853 atomic regions from SNP 49966 to 50567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,118 DEBUG Processing 1049/1132 atomic regions from SNP 314594 to 315194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,293 DEBUG Processing 168/853 atomic regions from SNP 50267 to 50868 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,389 DEBUG Processing 1050/1132 atomic regions from SNP 314894 to 315494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,568 DEBUG Processing 169/853 atomic regions from SNP 50568 to 51169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,666 DEBUG Processing 1051/1132 atomic regions from SNP 315194 to 315794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,868 DEBUG Processing 170/853 atomic regions from SNP 50869 to 51470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,917 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:47:54,918 DEBUG chr10 total SNP count: 224149 2025-01-31 09:47:54,918 DEBUG chr10 length: 130694993 2025-01-31 09:47:54,918 DEBUG ----------------------------------------- 2025-01-31 09:47:54,918 INFO Processing SNPs in chr10 2025-01-31 09:47:54,919 DEBUG chr8: Signal quantile: 0.990. signal threshold: 13. Best RMSEA: 0.013 2025-01-31 09:47:55,013 DEBUG Processing 1052/1132 atomic regions from SNP 315494 to 316094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,096 DEBUG Processing 171/853 atomic regions from SNP 51170 to 51771 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,134 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 224149)] 2025-01-31 09:47:55,284 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:55,303 DEBUG Processing 1053/1132 atomic regions from SNP 315794 to 316394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,322 DEBUG Processing 172/853 atomic regions from SNP 51471 to 52072 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,479 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:47:55,481 DEBUG chr7: Signal quantile: 0.987. signal threshold: 12. Best RMSEA: 0.012 2025-01-31 09:47:55,545 DEBUG Processing 173/853 atomic regions from SNP 51772 to 52373 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,587 DEBUG Processing 1054/1132 atomic regions from SNP 316094 to 316694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,766 DEBUG Processing 174/853 atomic regions from SNP 52073 to 52674 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,857 DEBUG Processing 1055/1132 atomic regions from SNP 316394 to 316994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,993 DEBUG Processing 175/853 atomic regions from SNP 52374 to 52975 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,120 DEBUG Processing 1056/1132 atomic regions from SNP 316694 to 317294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,220 DEBUG Processing 176/853 atomic regions from SNP 52675 to 53276 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,380 DEBUG Processing 1057/1132 atomic regions from SNP 316994 to 317594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,443 DEBUG Processing 177/853 atomic regions from SNP 52976 to 53577 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,639 DEBUG Processing 1058/1132 atomic regions from SNP 317294 to 317894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,662 DEBUG Processing 178/853 atomic regions from SNP 53277 to 53878 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,885 DEBUG Processing 179/853 atomic regions from SNP 53578 to 54179 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,912 DEBUG Processing 1059/1132 atomic regions from SNP 317594 to 318194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,071 DEBUG chr8 total SNP count: 219541 2025-01-31 09:47:57,071 DEBUG chr8 length: 129401213 2025-01-31 09:47:57,071 DEBUG ----------------------------------------- 2025-01-31 09:47:57,072 INFO Processing SNPs in chr8 2025-01-31 09:47:57,115 DEBUG Processing 180/853 atomic regions from SNP 53879 to 54480 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,212 DEBUG Processing 1060/1132 atomic regions from SNP 317894 to 318494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,285 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 219541)] 2025-01-31 09:47:57,349 DEBUG Processing 181/853 atomic regions from SNP 54180 to 54781 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,432 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:57,486 DEBUG Processing 1061/1132 atomic regions from SNP 318194 to 318794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,580 DEBUG Processing 182/853 atomic regions from SNP 54481 to 55082 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,749 DEBUG Processing 1062/1132 atomic regions from SNP 318494 to 319094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,810 DEBUG Processing 183/853 atomic regions from SNP 54782 to 55383 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,008 DEBUG Processing 1063/1132 atomic regions from SNP 318794 to 319394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,055 DEBUG Processing 184/853 atomic regions from SNP 55083 to 55684 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,120 DEBUG chr7 total SNP count: 231789 2025-01-31 09:47:58,120 DEBUG chr7 length: 145441459 2025-01-31 09:47:58,120 DEBUG ----------------------------------------- 2025-01-31 09:47:58,120 INFO Processing SNPs in chr7 2025-01-31 09:47:58,268 DEBUG Processing 1064/1132 atomic regions from SNP 319094 to 319694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,280 DEBUG Processing 185/853 atomic regions from SNP 55384 to 55985 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,520 DEBUG Processing 186/853 atomic regions from SNP 55685 to 56286 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,525 DEBUG Processing 1065/1132 atomic regions from SNP 319394 to 319994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,600 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 20851), (20851, 20873), (20873, 231789)] 2025-01-31 09:47:58,702 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:58,752 DEBUG Processing 187/853 atomic regions from SNP 55986 to 56587 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,786 DEBUG Processing 1066/1132 atomic regions from SNP 319694 to 320294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,975 DEBUG Processing 188/853 atomic regions from SNP 56287 to 56888 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,043 DEBUG Processing 1067/1132 atomic regions from SNP 319994 to 320594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,201 DEBUG Processing 189/853 atomic regions from SNP 56588 to 57189 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,328 DEBUG Processing 1068/1132 atomic regions from SNP 320294 to 320894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,423 DEBUG Processing 190/853 atomic regions from SNP 56889 to 57490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,616 DEBUG Processing 1069/1132 atomic regions from SNP 320594 to 321194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,644 DEBUG Processing 191/853 atomic regions from SNP 57190 to 57791 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,863 DEBUG Processing 192/853 atomic regions from SNP 57491 to 58092 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,887 DEBUG Processing 1070/1132 atomic regions from SNP 320894 to 321494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,082 DEBUG Processing 193/853 atomic regions from SNP 57792 to 58393 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,160 DEBUG Processing 1071/1132 atomic regions from SNP 321194 to 321794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,303 DEBUG Processing 194/853 atomic regions from SNP 58093 to 58694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,436 DEBUG Processing 1072/1132 atomic regions from SNP 321494 to 322094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,529 DEBUG Processing 195/853 atomic regions from SNP 58394 to 58995 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,724 DEBUG Processing 1073/1132 atomic regions from SNP 321794 to 322394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,756 DEBUG Processing 196/853 atomic regions from SNP 58695 to 59296 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,980 DEBUG Processing 197/853 atomic regions from SNP 58996 to 59597 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,003 DEBUG Processing 1074/1132 atomic regions from SNP 322094 to 322694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,162 DEBUG Segmenting atomic regions: 2025-01-31 09:48:01,201 DEBUG Processing 198/853 atomic regions from SNP 59297 to 59898 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,260 DEBUG Processing 1/68 atomic regions from SNP 0 to 603 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:01,273 DEBUG Processing 1075/1132 atomic regions from SNP 322394 to 322994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,421 DEBUG Processing 199/853 atomic regions from SNP 59598 to 60199 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,477 DEBUG Processing 2/68 atomic regions from SNP 303 to 906 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:01,541 DEBUG Processing 1076/1132 atomic regions from SNP 322694 to 323294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,647 DEBUG Processing 200/853 atomic regions from SNP 59899 to 60500 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,695 DEBUG Processing 3/68 atomic regions from SNP 606 to 1209 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:01,800 DEBUG Processing 1077/1132 atomic regions from SNP 322994 to 323594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,879 DEBUG Processing 201/853 atomic regions from SNP 60200 to 60801 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,937 DEBUG Processing 4/68 atomic regions from SNP 909 to 1512 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:02,039 DEBUG Subchromosome time: 342.88275946106296, subchromosome SNPs: 306539 2025-01-31 09:48:02,042 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:02,062 DEBUG Processing 1078/1132 atomic regions from SNP 323294 to 323894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,104 DEBUG Processing 202/853 atomic regions from SNP 60501 to 61102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,158 DEBUG Processing 5/68 atomic regions from SNP 1212 to 1815 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:02,321 DEBUG Processing 1079/1132 atomic regions from SNP 323594 to 324194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,323 DEBUG Processing 203/853 atomic regions from SNP 60802 to 61403 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,384 DEBUG Processing 6/68 atomic regions from SNP 1515 to 2118 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:02,541 DEBUG Processing 204/853 atomic regions from SNP 61103 to 61704 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,578 DEBUG Processing 1080/1132 atomic regions from SNP 323894 to 324494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,610 DEBUG Processing 7/68 atomic regions from SNP 1818 to 2421 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:02,779 DEBUG Processing 205/853 atomic regions from SNP 61404 to 62005 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,844 DEBUG Processing 1081/1132 atomic regions from SNP 324194 to 324794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,853 DEBUG Processing 8/68 atomic regions from SNP 2121 to 2724 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:02,966 DEBUG Segmenting atomic regions: 2025-01-31 09:48:03,023 DEBUG Processing 206/853 atomic regions from SNP 61705 to 62306 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,096 DEBUG Processing 1/25 atomic regions from SNP 0 to 602 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:03,105 DEBUG Processing 9/68 atomic regions from SNP 2424 to 3027 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:03,113 DEBUG Processing 1082/1132 atomic regions from SNP 324494 to 325094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,264 DEBUG Processing 207/853 atomic regions from SNP 62006 to 62607 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,354 DEBUG Processing 2/25 atomic regions from SNP 302 to 904 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:03,363 DEBUG Processing 10/68 atomic regions from SNP 2727 to 3330 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:03,387 DEBUG Processing 1083/1132 atomic regions from SNP 324794 to 325394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,516 DEBUG Processing 208/853 atomic regions from SNP 62307 to 62908 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,605 DEBUG Processing 3/25 atomic regions from SNP 604 to 1206 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:03,615 DEBUG Processing 11/68 atomic regions from SNP 3030 to 3633 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:03,657 DEBUG Processing 1084/1132 atomic regions from SNP 325094 to 325694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,751 DEBUG Processing 209/853 atomic regions from SNP 62608 to 63209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,828 DEBUG Processing 12/68 atomic regions from SNP 3333 to 3936 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:03,863 DEBUG Processing 4/25 atomic regions from SNP 906 to 1508 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:03,919 DEBUG Processing 1085/1132 atomic regions from SNP 325394 to 325994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,983 DEBUG Processing 210/853 atomic regions from SNP 62909 to 63510 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,037 DEBUG Processing 13/68 atomic regions from SNP 3636 to 4239 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:04,129 DEBUG Processing 5/25 atomic regions from SNP 1208 to 1810 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:04,184 DEBUG Processing 1086/1132 atomic regions from SNP 325694 to 326294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,227 DEBUG Processing 211/853 atomic regions from SNP 63210 to 63811 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,246 DEBUG Processing 14/68 atomic regions from SNP 3939 to 4542 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:04,367 DEBUG Processing 6/25 atomic regions from SNP 1510 to 2112 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:04,455 DEBUG Processing 1087/1132 atomic regions from SNP 325994 to 326594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,460 DEBUG Processing 15/68 atomic regions from SNP 4242 to 4844 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:04,472 DEBUG Processing 212/853 atomic regions from SNP 63511 to 64112 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,610 DEBUG Processing 7/25 atomic regions from SNP 1812 to 2414 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:04,697 DEBUG Processing 213/853 atomic regions from SNP 63812 to 64413 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,703 DEBUG Processing 16/68 atomic regions from SNP 4544 to 5146 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:04,726 DEBUG Processing 1088/1132 atomic regions from SNP 326294 to 326894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,852 DEBUG Processing 8/25 atomic regions from SNP 2114 to 2716 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:04,920 DEBUG Processing 214/853 atomic regions from SNP 64113 to 64714 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,945 DEBUG Processing 17/68 atomic regions from SNP 4846 to 5448 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:04,985 DEBUG Processing 1089/1132 atomic regions from SNP 326594 to 327194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,095 DEBUG Processing 9/25 atomic regions from SNP 2416 to 3018 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:05,141 DEBUG Processing 215/853 atomic regions from SNP 64414 to 65015 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,176 DEBUG Processing 18/68 atomic regions from SNP 5148 to 5750 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:05,245 DEBUG Processing 1090/1132 atomic regions from SNP 326894 to 327494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,339 DEBUG Processing 10/25 atomic regions from SNP 2718 to 3320 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:05,359 DEBUG Processing 216/853 atomic regions from SNP 64715 to 65316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,399 DEBUG Processing 19/68 atomic regions from SNP 5450 to 6052 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:05,501 DEBUG Processing 1091/1132 atomic regions from SNP 327194 to 327794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,580 DEBUG Processing 217/853 atomic regions from SNP 65016 to 65617 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,591 DEBUG Processing 11/25 atomic regions from SNP 3020 to 3622 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:05,636 DEBUG Processing 20/68 atomic regions from SNP 5752 to 6354 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:05,758 DEBUG Processing 1092/1132 atomic regions from SNP 327494 to 328094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,805 DEBUG Processing 218/853 atomic regions from SNP 65317 to 65918 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,843 DEBUG Processing 12/25 atomic regions from SNP 3322 to 3924 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:05,850 DEBUG Processing 21/68 atomic regions from SNP 6054 to 6656 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:06,017 DEBUG Processing 1093/1132 atomic regions from SNP 327794 to 328394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,031 DEBUG Processing 219/853 atomic regions from SNP 65618 to 66219 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,068 DEBUG Processing 22/68 atomic regions from SNP 6356 to 6958 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:06,107 DEBUG Processing 13/25 atomic regions from SNP 3624 to 4226 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:06,259 DEBUG Processing 220/853 atomic regions from SNP 65919 to 66520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,279 DEBUG Processing 1094/1132 atomic regions from SNP 328094 to 328694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,285 DEBUG Processing 23/68 atomic regions from SNP 6658 to 7260 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:06,390 DEBUG Processing 14/25 atomic regions from SNP 3926 to 4528 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:06,486 DEBUG Processing 221/853 atomic regions from SNP 66220 to 66821 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,505 DEBUG Processing 24/68 atomic regions from SNP 6960 to 7562 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:06,548 DEBUG Processing 1095/1132 atomic regions from SNP 328394 to 328994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,676 DEBUG Processing 15/25 atomic regions from SNP 4228 to 4830 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:06,707 DEBUG Processing 222/853 atomic regions from SNP 66521 to 67122 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,724 DEBUG Processing 25/68 atomic regions from SNP 7262 to 7864 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:06,818 DEBUG Processing 1096/1132 atomic regions from SNP 328694 to 329294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,937 DEBUG Processing 223/853 atomic regions from SNP 66822 to 67423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,945 DEBUG Processing 26/68 atomic regions from SNP 7564 to 8166 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:06,955 DEBUG Processing 16/25 atomic regions from SNP 4530 to 5132 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:07,089 DEBUG Processing 1097/1132 atomic regions from SNP 328994 to 329594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,158 DEBUG Processing 27/68 atomic regions from SNP 7866 to 8468 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:07,165 DEBUG Processing 224/853 atomic regions from SNP 67123 to 67724 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,231 DEBUG Processing 17/25 atomic regions from SNP 4832 to 5434 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:07,348 DEBUG Processing 1098/1132 atomic regions from SNP 329294 to 329894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,374 DEBUG Processing 28/68 atomic regions from SNP 8168 to 8770 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:07,393 DEBUG Processing 225/853 atomic regions from SNP 67424 to 68025 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,508 DEBUG Processing 18/25 atomic regions from SNP 5134 to 5736 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:07,589 DEBUG Processing 29/68 atomic regions from SNP 8470 to 9072 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:07,615 DEBUG Processing 1099/1132 atomic regions from SNP 329594 to 330194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,627 DEBUG Processing 226/853 atomic regions from SNP 67725 to 68326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,785 DEBUG Processing 19/25 atomic regions from SNP 5436 to 6038 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:07,803 DEBUG Processing 30/68 atomic regions from SNP 8772 to 9374 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:07,859 DEBUG Processing 227/853 atomic regions from SNP 68026 to 68627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,897 DEBUG Processing 1100/1132 atomic regions from SNP 329894 to 330494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,013 DEBUG Processing 31/68 atomic regions from SNP 9074 to 9676 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:08,054 DEBUG Processing 20/25 atomic regions from SNP 5738 to 6340 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:08,089 DEBUG Processing 228/853 atomic regions from SNP 68327 to 68928 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,173 DEBUG Processing 1101/1132 atomic regions from SNP 330194 to 330794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,233 DEBUG Processing 32/68 atomic regions from SNP 9376 to 9978 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:08,320 DEBUG Processing 229/853 atomic regions from SNP 68628 to 69229 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,331 DEBUG Processing 21/25 atomic regions from SNP 6040 to 6642 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:08,439 DEBUG Processing 1102/1132 atomic regions from SNP 330494 to 331094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,453 DEBUG Processing 33/68 atomic regions from SNP 9678 to 10280 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:08,557 DEBUG Processing 230/853 atomic regions from SNP 68929 to 69530 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,610 DEBUG Processing 22/25 atomic regions from SNP 6342 to 6944 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:08,670 DEBUG Processing 34/68 atomic regions from SNP 9980 to 10582 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:08,701 DEBUG Processing 1103/1132 atomic regions from SNP 330794 to 331394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,783 DEBUG Processing 231/853 atomic regions from SNP 69230 to 69831 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,885 DEBUG Processing 35/68 atomic regions from SNP 10282 to 10884 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:08,889 DEBUG Processing 23/25 atomic regions from SNP 6644 to 7246 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:08,962 DEBUG Processing 1104/1132 atomic regions from SNP 331094 to 331694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,004 DEBUG Processing 232/853 atomic regions from SNP 69531 to 70132 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,129 DEBUG Processing 36/68 atomic regions from SNP 10584 to 11186 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:09,176 DEBUG Processing 24/25 atomic regions from SNP 6946 to 7547 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:09,224 DEBUG Processing 1105/1132 atomic regions from SNP 331394 to 331994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,232 DEBUG Processing 233/853 atomic regions from SNP 69832 to 70433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,365 DEBUG Processing 37/68 atomic regions from SNP 10886 to 11488 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:09,458 DEBUG Processing 234/853 atomic regions from SNP 70133 to 70734 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,459 DEBUG Processing 25/25 atomic regions from SNP 7247 to 7848 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:09,506 DEBUG Processing 1106/1132 atomic regions from SNP 331694 to 332294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,571 DEBUG Processing 38/68 atomic regions from SNP 11188 to 11790 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:09,593 DEBUG Unique SNPs positions in subchromosome 2: 7849 2025-01-31 09:48:09,603 DEBUG Subchromosome time: 7.561115678050555, subchromosome SNPs: 7849 2025-01-31 09:48:09,603 DEBUG Estimated BADs: [1.50, 0.75, 1.50, 4.51, 0.50, 3.01, 0.30, 0.75, 0.30, 3.01, 0.75, 1.50, 0.75, 6.01, 0.25, 1.50, 4.51, 1.50, 0.25, 1.50, 0.75, 6.01, 3.01, 0.30, 1.50, 3.01, 1.50, 0.75, 3.01, 1.50, 3.01, 6.01, 1.50, 10.53, 1.50, 1.50, 6.01] SNP counts: [8222, 18162, 11814, 21498, 1170, 4415, 6754, 17695, 6100, 821, 18271, 24293, 5863, 1183, 6769, 2027, 2827, 4734, 9617, 12607, 18365, 827, 7480, 1522, 5703, 7787, 13196, 21903, 12012, 11102, 6638, 2074, 9247, 171, 3670, 3725, 4124] SNP IDs counts: [8222, 18162, 11814, 21498, 1170, 4415, 6754, 17695, 6100, 821, 18271, 24293, 5863, 1183, 6769, 2027, 2827, 4734, 9617, 12607, 18365, 827, 7480, 1522, 5703, 7787, 13196, 21903, 12012, 11102, 6638, 2074, 9247, 171, 3670, 3725, 4124] Critical gap: 727161bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.55Mbp, 18.02Mbp, 24.90Mbp, 36.24Mbp, 36.99Mbp, 39.41Mbp, 43.40Mbp, 53.30Mbp, 57.11Mbp, 57.57Mbp, 67.86Mbp, 81.02Mbp, 84.65Mbp, 85.29Mbp, 89.46Mbp, 90.85Mbp, 92.32Mbp, 94.85Mbp, 101.09Mbp, 107.96Mbp, 118.47Mbp, 118.90Mbp, 122.95Mbp, 123.85Mbp, 127.00Mbp, 131.15Mbp, 138.43Mbp, 150.77Mbp, 157.47Mbp, 163.45Mbp, 166.97Mbp, 168.08Mbp, 173.00Mbp, 173.08Mbp, 175.18Mbp[1.53Mbp], 179.82Mbp, 182.11Mbp] 2025-01-31 09:48:09,603 DEBUG chr2 time: 7.561606615083292 s 2025-01-31 09:48:09,685 DEBUG Processing 235/853 atomic regions from SNP 70434 to 71035 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,782 DEBUG chr2: Fitting background model for 37 segments 2025-01-31 09:48:09,793 DEBUG Processing 39/68 atomic regions from SNP 11490 to 12092 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:09,811 DEBUG Processing 1107/1132 atomic regions from SNP 331994 to 332594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,908 DEBUG Processing 236/853 atomic regions from SNP 70735 to 71336 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,016 DEBUG Processing 40/68 atomic regions from SNP 11792 to 12394 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:10,111 DEBUG Processing 1108/1132 atomic regions from SNP 332294 to 332894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,131 DEBUG Processing 237/853 atomic regions from SNP 71036 to 71637 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,236 DEBUG Processing 41/68 atomic regions from SNP 12094 to 12696 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:10,355 DEBUG Processing 238/853 atomic regions from SNP 71337 to 71938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,409 DEBUG Processing 1109/1132 atomic regions from SNP 332594 to 333194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,461 DEBUG Processing 42/68 atomic regions from SNP 12396 to 12998 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:10,584 DEBUG Processing 239/853 atomic regions from SNP 71638 to 72239 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,695 DEBUG Processing 43/68 atomic regions from SNP 12698 to 13300 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:10,734 DEBUG Processing 1110/1132 atomic regions from SNP 332894 to 333494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,806 DEBUG Processing 240/853 atomic regions from SNP 71939 to 72540 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,923 DEBUG Processing 44/68 atomic regions from SNP 13000 to 13602 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:11,029 DEBUG Processing 241/853 atomic regions from SNP 72240 to 72841 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,038 DEBUG Processing 1111/1132 atomic regions from SNP 333194 to 333794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,141 DEBUG Processing 45/68 atomic regions from SNP 13302 to 13904 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:11,252 DEBUG Processing 242/853 atomic regions from SNP 72541 to 73142 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,320 DEBUG Processing 1112/1132 atomic regions from SNP 333494 to 334094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,356 DEBUG Processing 46/68 atomic regions from SNP 13604 to 14206 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:11,475 DEBUG Processing 243/853 atomic regions from SNP 72842 to 73443 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,585 DEBUG Processing 47/68 atomic regions from SNP 13906 to 14508 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:11,625 DEBUG Processing 1113/1132 atomic regions from SNP 333794 to 334394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,695 DEBUG Processing 244/853 atomic regions from SNP 73143 to 73744 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,840 DEBUG Processing 48/68 atomic regions from SNP 14208 to 14810 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:11,917 DEBUG Processing 245/853 atomic regions from SNP 73444 to 74045 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,938 DEBUG Processing 1114/1132 atomic regions from SNP 334094 to 334694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,084 DEBUG Processing 49/68 atomic regions from SNP 14510 to 15112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:12,149 DEBUG Processing 246/853 atomic regions from SNP 73745 to 74346 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,234 DEBUG Processing 1115/1132 atomic regions from SNP 334394 to 334994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,336 DEBUG Processing 50/68 atomic regions from SNP 14812 to 15414 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:12,381 DEBUG Processing 247/853 atomic regions from SNP 74046 to 74647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,505 DEBUG Processing 1116/1132 atomic regions from SNP 334694 to 335294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,595 DEBUG Processing 51/68 atomic regions from SNP 15114 to 15716 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:12,609 DEBUG Processing 248/853 atomic regions from SNP 74347 to 74948 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,775 DEBUG Processing 1117/1132 atomic regions from SNP 334994 to 335594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,825 DEBUG Processing 52/68 atomic regions from SNP 15416 to 16018 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:12,837 DEBUG Processing 249/853 atomic regions from SNP 74648 to 75249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,055 DEBUG Processing 1118/1132 atomic regions from SNP 335294 to 335894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,064 DEBUG Processing 250/853 atomic regions from SNP 74949 to 75550 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,067 DEBUG Processing 53/68 atomic regions from SNP 15718 to 16320 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:13,292 DEBUG Processing 251/853 atomic regions from SNP 75250 to 75851 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,324 DEBUG Processing 54/68 atomic regions from SNP 16020 to 16622 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:13,336 DEBUG Processing 1119/1132 atomic regions from SNP 335594 to 336194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,522 DEBUG Processing 252/853 atomic regions from SNP 75551 to 76152 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,580 DEBUG Processing 55/68 atomic regions from SNP 16322 to 16924 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:13,631 DEBUG Processing 1120/1132 atomic regions from SNP 335894 to 336494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,753 DEBUG Processing 253/853 atomic regions from SNP 75852 to 76453 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,799 DEBUG Processing 56/68 atomic regions from SNP 16624 to 17226 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:13,915 DEBUG Processing 1121/1132 atomic regions from SNP 336194 to 336794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,980 DEBUG Processing 254/853 atomic regions from SNP 76153 to 76754 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,017 DEBUG Processing 57/68 atomic regions from SNP 16926 to 17528 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:14,185 DEBUG Processing 1122/1132 atomic regions from SNP 336494 to 337094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,217 DEBUG Processing 255/853 atomic regions from SNP 76454 to 77055 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,237 DEBUG Processing 58/68 atomic regions from SNP 17228 to 17830 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:14,461 DEBUG Processing 59/68 atomic regions from SNP 17530 to 18132 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:14,461 DEBUG Processing 256/853 atomic regions from SNP 76755 to 77356 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,468 DEBUG Processing 1123/1132 atomic regions from SNP 336794 to 337394 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,684 DEBUG Processing 60/68 atomic regions from SNP 17832 to 18434 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:14,687 DEBUG Processing 257/853 atomic regions from SNP 77056 to 77657 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,763 DEBUG Processing 1124/1132 atomic regions from SNP 337094 to 337694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,904 DEBUG Processing 61/68 atomic regions from SNP 18134 to 18736 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:14,945 DEBUG Processing 258/853 atomic regions from SNP 77357 to 77958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,025 DEBUG Processing 1125/1132 atomic regions from SNP 337394 to 337994 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,124 DEBUG Processing 62/68 atomic regions from SNP 18436 to 19038 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:15,196 DEBUG Processing 259/853 atomic regions from SNP 77658 to 78259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,286 DEBUG Processing 1126/1132 atomic regions from SNP 337694 to 338294 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,361 DEBUG Processing 63/68 atomic regions from SNP 18738 to 19340 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:15,430 DEBUG Processing 260/853 atomic regions from SNP 77959 to 78560 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,554 DEBUG Processing 1127/1132 atomic regions from SNP 337994 to 338594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,614 DEBUG Processing 64/68 atomic regions from SNP 19040 to 19642 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:15,652 DEBUG Processing 261/853 atomic regions from SNP 78260 to 78861 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,825 DEBUG Processing 1128/1132 atomic regions from SNP 338294 to 338894 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,867 DEBUG Processing 65/68 atomic regions from SNP 19342 to 19944 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:15,870 DEBUG Processing 262/853 atomic regions from SNP 78561 to 79162 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,090 DEBUG Processing 263/853 atomic regions from SNP 78862 to 79463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,100 DEBUG Processing 1129/1132 atomic regions from SNP 338594 to 339194 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,121 DEBUG Processing 66/68 atomic regions from SNP 19644 to 20246 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:16,314 DEBUG Processing 264/853 atomic regions from SNP 79163 to 79764 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,379 DEBUG Processing 67/68 atomic regions from SNP 19946 to 20548 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:16,394 DEBUG Processing 1130/1132 atomic regions from SNP 338894 to 339494 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,538 DEBUG Processing 265/853 atomic regions from SNP 79464 to 80065 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,631 DEBUG Processing 68/68 atomic regions from SNP 20248 to 20850 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:16,681 DEBUG Processing 1131/1132 atomic regions from SNP 339194 to 339794 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,750 DEBUG Unique SNPs positions in subchromosome 1: 20851 2025-01-31 09:48:16,775 DEBUG Processing 266/853 atomic regions from SNP 79765 to 80366 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,821 DEBUG Subchromosome time: 18.119306789012626, subchromosome SNPs: 20851 2025-01-31 09:48:16,873 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:16,965 DEBUG Processing 1132/1132 atomic regions from SNP 339494 to 340094 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,038 DEBUG Processing 267/853 atomic regions from SNP 80066 to 80667 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,100 DEBUG Unique SNPs positions in subchromosome 1: 340095 2025-01-31 09:48:17,294 DEBUG Processing 268/853 atomic regions from SNP 80367 to 80968 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,537 DEBUG Processing 269/853 atomic regions from SNP 80668 to 81269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,774 DEBUG Processing 270/853 atomic regions from SNP 80969 to 81570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,001 DEBUG Processing 271/853 atomic regions from SNP 81270 to 81870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,227 DEBUG Processing 272/853 atomic regions from SNP 81570 to 82170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,459 DEBUG Processing 273/853 atomic regions from SNP 81870 to 82470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,695 DEBUG Processing 274/853 atomic regions from SNP 82170 to 82770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,930 DEBUG Processing 275/853 atomic regions from SNP 82470 to 83070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,163 DEBUG Processing 276/853 atomic regions from SNP 82770 to 83370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,404 DEBUG Processing 277/853 atomic regions from SNP 83070 to 83670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,631 DEBUG Processing 278/853 atomic regions from SNP 83370 to 83970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,858 DEBUG Processing 279/853 atomic regions from SNP 83670 to 84270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,099 DEBUG Processing 280/853 atomic regions from SNP 83970 to 84570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,354 DEBUG Processing 281/853 atomic regions from SNP 84270 to 84870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,589 DEBUG Processing 282/853 atomic regions from SNP 84570 to 85170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,824 DEBUG Processing 283/853 atomic regions from SNP 84870 to 85470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,051 DEBUG Processing 284/853 atomic regions from SNP 85170 to 85770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,276 DEBUG Processing 285/853 atomic regions from SNP 85470 to 86070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,502 DEBUG Processing 286/853 atomic regions from SNP 85770 to 86370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,734 DEBUG Processing 287/853 atomic regions from SNP 86070 to 86670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,775 DEBUG Segmenting atomic regions: 2025-01-31 09:48:21,870 DEBUG Processing 1/746 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,968 DEBUG Processing 288/853 atomic regions from SNP 86370 to 86970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,081 DEBUG Processing 2/746 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,198 DEBUG Processing 289/853 atomic regions from SNP 86670 to 87270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,293 DEBUG Processing 3/746 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,423 DEBUG Processing 290/853 atomic regions from SNP 86970 to 87570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,510 DEBUG Processing 4/746 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,651 DEBUG Processing 291/853 atomic regions from SNP 87270 to 87870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,726 DEBUG Processing 5/746 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,869 DEBUG Processing 292/853 atomic regions from SNP 87570 to 88170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,938 DEBUG Processing 6/746 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,087 DEBUG Processing 293/853 atomic regions from SNP 87870 to 88470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,151 DEBUG Processing 7/746 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,305 DEBUG Processing 294/853 atomic regions from SNP 88170 to 88770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,379 DEBUG Processing 8/746 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,528 DEBUG Processing 295/853 atomic regions from SNP 88470 to 89070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,623 DEBUG Processing 9/746 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,749 DEBUG Processing 296/853 atomic regions from SNP 88770 to 89370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,818 DEBUG Segmenting atomic regions: 2025-01-31 09:48:23,841 DEBUG Processing 10/746 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,912 DEBUG Processing 1/730 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,973 DEBUG Processing 297/853 atomic regions from SNP 89070 to 89670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,058 DEBUG Processing 11/746 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,124 DEBUG Processing 2/730 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,202 DEBUG Processing 298/853 atomic regions from SNP 89370 to 89970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,272 DEBUG Processing 12/746 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,349 DEBUG Processing 3/730 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,438 DEBUG Processing 299/853 atomic regions from SNP 89670 to 90270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,493 DEBUG Processing 13/746 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,582 DEBUG Processing 4/730 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,678 DEBUG Processing 300/853 atomic regions from SNP 89970 to 90570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,718 DEBUG Processing 14/746 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,791 DEBUG Processing 5/730 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,925 DEBUG Processing 301/853 atomic regions from SNP 90270 to 90870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,941 DEBUG Processing 15/746 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,004 DEBUG Processing 6/730 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,162 DEBUG Processing 16/746 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,166 DEBUG Processing 302/853 atomic regions from SNP 90570 to 91170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,238 DEBUG Processing 7/730 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,405 DEBUG Processing 303/853 atomic regions from SNP 90870 to 91470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,413 DEBUG Processing 17/746 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,481 DEBUG Processing 8/730 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,642 DEBUG Processing 304/853 atomic regions from SNP 91170 to 91770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,644 DEBUG Processing 18/746 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,698 DEBUG Processing 9/730 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,876 DEBUG Processing 305/853 atomic regions from SNP 91470 to 92070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,878 DEBUG Processing 19/746 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,904 DEBUG Processing 10/730 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,106 DEBUG Processing 306/853 atomic regions from SNP 91770 to 92370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,107 DEBUG Processing 20/746 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,117 DEBUG Processing 11/730 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,329 DEBUG Processing 12/730 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,334 DEBUG Processing 21/746 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,336 DEBUG Processing 307/853 atomic regions from SNP 92070 to 92670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,543 DEBUG Processing 13/730 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,564 DEBUG Processing 22/746 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,569 DEBUG Processing 308/853 atomic regions from SNP 92370 to 92970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,747 DEBUG Processing 14/730 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,787 DEBUG Processing 23/746 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,791 DEBUG Processing 309/853 atomic regions from SNP 92670 to 93270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,955 DEBUG Processing 15/730 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,011 DEBUG Processing 24/746 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,018 DEBUG Processing 310/853 atomic regions from SNP 92970 to 93570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,164 DEBUG Processing 16/730 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,236 DEBUG Processing 25/746 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,248 DEBUG Processing 311/853 atomic regions from SNP 93270 to 93870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,371 DEBUG Processing 17/730 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,472 DEBUG Processing 26/746 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,476 DEBUG Processing 312/853 atomic regions from SNP 93570 to 94170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,580 DEBUG Processing 18/730 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,707 DEBUG Processing 313/853 atomic regions from SNP 93870 to 94470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,723 DEBUG Processing 27/746 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,784 DEBUG Processing 19/730 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,963 DEBUG Processing 28/746 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,971 DEBUG Processing 314/853 atomic regions from SNP 94170 to 94770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,007 DEBUG Processing 20/730 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:28,191 DEBUG Processing 29/746 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,211 DEBUG Processing 315/853 atomic regions from SNP 94470 to 95070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,226 DEBUG Processing 21/730 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:28,416 DEBUG Processing 30/746 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,437 DEBUG Processing 22/730 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:28,444 DEBUG Processing 316/853 atomic regions from SNP 94770 to 95370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,648 DEBUG Processing 31/746 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,660 DEBUG Processing 23/730 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:28,688 DEBUG Processing 317/853 atomic regions from SNP 95070 to 95670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,874 DEBUG Processing 24/730 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:28,874 DEBUG Processing 32/746 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,923 DEBUG Processing 318/853 atomic regions from SNP 95370 to 95970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,085 DEBUG Processing 25/730 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:29,095 DEBUG Processing 33/746 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,173 DEBUG Processing 319/853 atomic regions from SNP 95670 to 96270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,290 DEBUG Processing 26/730 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:29,312 DEBUG Processing 34/746 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,414 DEBUG Processing 320/853 atomic regions from SNP 95970 to 96570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,503 DEBUG Processing 27/730 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:29,540 DEBUG Processing 35/746 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,653 DEBUG Processing 321/853 atomic regions from SNP 96270 to 96870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,720 DEBUG Processing 28/730 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:29,773 DEBUG Processing 36/746 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,888 DEBUG Processing 322/853 atomic regions from SNP 96570 to 97170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,934 DEBUG Processing 29/730 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,015 DEBUG Processing 37/746 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,129 DEBUG Processing 323/853 atomic regions from SNP 96870 to 97470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,151 DEBUG Processing 30/730 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,247 DEBUG Processing 38/746 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,372 DEBUG Processing 31/730 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,373 DEBUG Processing 324/853 atomic regions from SNP 97170 to 97770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,477 DEBUG Processing 39/746 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,597 DEBUG Processing 32/730 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,616 DEBUG Processing 325/853 atomic regions from SNP 97470 to 98070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,709 DEBUG Processing 40/746 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,812 DEBUG Processing 33/730 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,850 DEBUG Processing 326/853 atomic regions from SNP 97770 to 98370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,942 DEBUG Processing 41/746 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,028 DEBUG Processing 34/730 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:31,084 DEBUG Processing 327/853 atomic regions from SNP 98070 to 98670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,174 DEBUG Processing 42/746 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,252 DEBUG Processing 35/730 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:31,316 DEBUG Processing 328/853 atomic regions from SNP 98370 to 98970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,410 DEBUG Processing 43/746 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,474 DEBUG Processing 36/730 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:31,551 DEBUG Processing 329/853 atomic regions from SNP 98670 to 99270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,636 DEBUG Processing 44/746 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,688 DEBUG Processing 37/730 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:31,794 DEBUG Processing 330/853 atomic regions from SNP 98970 to 99570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,865 DEBUG Processing 45/746 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,897 DEBUG Processing 38/730 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,035 DEBUG Processing 331/853 atomic regions from SNP 99270 to 99870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,107 DEBUG Processing 46/746 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,123 DEBUG Processing 39/730 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,273 DEBUG Processing 332/853 atomic regions from SNP 99570 to 100170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,333 DEBUG Processing 47/746 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,341 DEBUG Processing 40/730 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,505 DEBUG Processing 333/853 atomic regions from SNP 99870 to 100470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,558 DEBUG Processing 48/746 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,562 DEBUG Processing 41/730 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,738 DEBUG Processing 334/853 atomic regions from SNP 100170 to 100770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,779 DEBUG Processing 42/730 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,784 DEBUG Processing 49/746 atomic regions from SNP 14448 to 15048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,973 DEBUG Processing 335/853 atomic regions from SNP 100470 to 101070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,990 DEBUG Processing 43/730 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,011 DEBUG Processing 50/746 atomic regions from SNP 14748 to 15348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,210 DEBUG Processing 44/730 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,213 DEBUG Processing 336/853 atomic regions from SNP 100770 to 101370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,236 DEBUG Processing 51/746 atomic regions from SNP 15048 to 15648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,431 DEBUG Processing 45/730 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,454 DEBUG Processing 337/853 atomic regions from SNP 101070 to 101670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,464 DEBUG Processing 52/746 atomic regions from SNP 15348 to 15948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,671 DEBUG Processing 46/730 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,684 DEBUG Processing 53/746 atomic regions from SNP 15648 to 16248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,689 DEBUG Processing 338/853 atomic regions from SNP 101370 to 101970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,884 DEBUG Processing 47/730 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,897 DEBUG Processing 54/746 atomic regions from SNP 15948 to 16548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,920 DEBUG Processing 339/853 atomic regions from SNP 101670 to 102270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,094 DEBUG Processing 48/730 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:34,112 DEBUG Processing 55/746 atomic regions from SNP 16248 to 16848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,147 DEBUG Processing 340/853 atomic regions from SNP 101970 to 102570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,326 DEBUG Processing 49/730 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:34,333 DEBUG Processing 56/746 atomic regions from SNP 16548 to 17148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,371 DEBUG Processing 341/853 atomic regions from SNP 102270 to 102870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,560 DEBUG Processing 57/746 atomic regions from SNP 16848 to 17448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,560 DEBUG Processing 50/730 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:34,597 DEBUG Processing 342/853 atomic regions from SNP 102570 to 103170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,771 DEBUG Processing 51/730 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:34,800 DEBUG Processing 58/746 atomic regions from SNP 17148 to 17748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,823 DEBUG Processing 343/853 atomic regions from SNP 102870 to 103470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,979 DEBUG Processing 52/730 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,021 DEBUG Processing 59/746 atomic regions from SNP 17448 to 18048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,048 DEBUG Processing 344/853 atomic regions from SNP 103170 to 103770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,190 DEBUG Processing 53/730 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,242 DEBUG Processing 60/746 atomic regions from SNP 17748 to 18348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,279 DEBUG Processing 345/853 atomic regions from SNP 103470 to 104070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,395 DEBUG Processing 54/730 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,474 DEBUG Processing 61/746 atomic regions from SNP 18048 to 18648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,507 DEBUG Processing 346/853 atomic regions from SNP 103770 to 104370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,606 DEBUG Processing 55/730 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,703 DEBUG Processing 62/746 atomic regions from SNP 18348 to 18948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,740 DEBUG Processing 347/853 atomic regions from SNP 104070 to 104670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,820 DEBUG Processing 56/730 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,917 DEBUG Processing 63/746 atomic regions from SNP 18648 to 19248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,972 DEBUG Processing 348/853 atomic regions from SNP 104370 to 104970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,035 DEBUG Processing 57/730 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:36,164 DEBUG Processing 64/746 atomic regions from SNP 18948 to 19548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,205 DEBUG Processing 349/853 atomic regions from SNP 104670 to 105270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,254 DEBUG Processing 58/730 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:36,394 DEBUG Processing 65/746 atomic regions from SNP 19248 to 19848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,441 DEBUG Processing 350/853 atomic regions from SNP 104970 to 105570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,486 DEBUG Processing 59/730 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:36,637 DEBUG Processing 66/746 atomic regions from SNP 19548 to 20148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,684 DEBUG Processing 351/853 atomic regions from SNP 105270 to 105870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,737 DEBUG Processing 60/730 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:36,863 DEBUG Processing 67/746 atomic regions from SNP 19848 to 20448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,920 DEBUG Processing 352/853 atomic regions from SNP 105570 to 106170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,963 DEBUG Processing 61/730 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:37,089 DEBUG Processing 68/746 atomic regions from SNP 20148 to 20748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,153 DEBUG Processing 353/853 atomic regions from SNP 105870 to 106470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,177 DEBUG Processing 62/730 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:37,310 DEBUG Processing 69/746 atomic regions from SNP 20448 to 21048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,387 DEBUG Processing 354/853 atomic regions from SNP 106170 to 106770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,392 DEBUG Processing 63/730 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:37,530 DEBUG Processing 70/746 atomic regions from SNP 20748 to 21348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,605 DEBUG Processing 64/730 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:37,619 DEBUG Processing 355/853 atomic regions from SNP 106470 to 107070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,766 DEBUG Processing 71/746 atomic regions from SNP 21048 to 21648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,823 DEBUG Processing 65/730 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:37,854 DEBUG Processing 356/853 atomic regions from SNP 106770 to 107370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,993 DEBUG Processing 72/746 atomic regions from SNP 21348 to 21948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,046 DEBUG Processing 66/730 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:38,099 DEBUG Processing 357/853 atomic regions from SNP 107070 to 107670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,211 DEBUG Processing 73/746 atomic regions from SNP 21648 to 22248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,266 DEBUG Processing 67/730 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:38,334 DEBUG Processing 358/853 atomic regions from SNP 107370 to 107970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,426 DEBUG Processing 74/746 atomic regions from SNP 21948 to 22548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,479 DEBUG Processing 68/730 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:38,576 DEBUG Processing 359/853 atomic regions from SNP 107670 to 108270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,645 DEBUG Processing 75/746 atomic regions from SNP 22248 to 22848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,699 DEBUG Processing 69/730 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:38,829 DEBUG Processing 360/853 atomic regions from SNP 107970 to 108570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,875 DEBUG Processing 76/746 atomic regions from SNP 22548 to 23148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,938 DEBUG Processing 70/730 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:39,057 DEBUG Processing 361/853 atomic regions from SNP 108270 to 108870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,097 DEBUG Processing 77/746 atomic regions from SNP 22848 to 23448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,158 DEBUG Processing 71/730 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:39,281 DEBUG Processing 362/853 atomic regions from SNP 108570 to 109170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,312 DEBUG Processing 78/746 atomic regions from SNP 23148 to 23748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,366 DEBUG Processing 72/730 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:39,509 DEBUG Processing 363/853 atomic regions from SNP 108870 to 109470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,538 DEBUG Processing 79/746 atomic regions from SNP 23448 to 24048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,571 DEBUG Processing 73/730 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:39,741 DEBUG Processing 364/853 atomic regions from SNP 109170 to 109770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,757 DEBUG Processing 80/746 atomic regions from SNP 23748 to 24348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,778 DEBUG Processing 74/730 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:39,981 DEBUG Processing 365/853 atomic regions from SNP 109470 to 110070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,987 DEBUG Processing 81/746 atomic regions from SNP 24048 to 24648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,991 DEBUG Processing 75/730 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:40,208 DEBUG Processing 76/730 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:40,210 DEBUG Processing 82/746 atomic regions from SNP 24348 to 24948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,220 DEBUG Processing 366/853 atomic regions from SNP 109770 to 110370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,419 DEBUG Processing 77/730 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:40,422 DEBUG Processing 83/746 atomic regions from SNP 24648 to 25248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,450 DEBUG Processing 367/853 atomic regions from SNP 110070 to 110670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,626 DEBUG Processing 78/730 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:40,636 DEBUG Processing 84/746 atomic regions from SNP 24948 to 25548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,675 DEBUG Processing 368/853 atomic regions from SNP 110370 to 110970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,838 DEBUG Processing 79/730 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:40,874 DEBUG Processing 85/746 atomic regions from SNP 25248 to 25848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,908 DEBUG Processing 369/853 atomic regions from SNP 110670 to 111270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,051 DEBUG Processing 80/730 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,103 DEBUG Processing 86/746 atomic regions from SNP 25548 to 26148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,141 DEBUG Processing 370/853 atomic regions from SNP 110970 to 111570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,263 DEBUG Processing 81/730 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,340 DEBUG Processing 87/746 atomic regions from SNP 25848 to 26448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,400 DEBUG Processing 371/853 atomic regions from SNP 111270 to 111870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,475 DEBUG Processing 82/730 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,580 DEBUG Processing 88/746 atomic regions from SNP 26148 to 26748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,671 DEBUG Processing 372/853 atomic regions from SNP 111570 to 112170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,694 DEBUG Processing 83/730 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,826 DEBUG Processing 89/746 atomic regions from SNP 26448 to 27048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,917 DEBUG Processing 84/730 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,923 DEBUG Processing 373/853 atomic regions from SNP 111870 to 112470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,049 DEBUG Processing 90/746 atomic regions from SNP 26748 to 27348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,069 DEBUG Segmenting atomic regions: 2025-01-31 09:48:42,132 DEBUG Processing 85/730 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:42,157 DEBUG Processing 374/853 atomic regions from SNP 112170 to 112770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,167 DEBUG Processing 1/702 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,261 DEBUG Processing 91/746 atomic regions from SNP 27048 to 27648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,340 DEBUG Processing 86/730 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:42,383 DEBUG Processing 2/702 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,388 DEBUG Processing 375/853 atomic regions from SNP 112470 to 113070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,479 DEBUG Processing 92/746 atomic regions from SNP 27348 to 27948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,554 DEBUG Processing 87/730 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:42,596 DEBUG Processing 3/702 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,622 DEBUG Processing 376/853 atomic regions from SNP 112770 to 113370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,696 DEBUG Processing 93/746 atomic regions from SNP 27648 to 28248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,769 DEBUG Processing 88/730 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:42,810 DEBUG Processing 4/702 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,856 DEBUG Processing 377/853 atomic regions from SNP 113070 to 113670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,914 DEBUG Processing 94/746 atomic regions from SNP 27948 to 28548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,986 DEBUG Processing 89/730 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:43,025 DEBUG Processing 5/702 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,089 DEBUG Processing 378/853 atomic regions from SNP 113370 to 113970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,136 DEBUG Processing 95/746 atomic regions from SNP 28248 to 28848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,204 DEBUG Processing 90/730 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:43,264 DEBUG Processing 6/702 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,320 DEBUG Processing 379/853 atomic regions from SNP 113670 to 114270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,351 DEBUG Processing 96/746 atomic regions from SNP 28548 to 29148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,415 DEBUG Processing 91/730 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:43,507 DEBUG Processing 7/702 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,549 DEBUG Processing 380/853 atomic regions from SNP 113970 to 114570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,565 DEBUG Processing 97/746 atomic regions from SNP 28848 to 29448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,623 DEBUG Processing 92/730 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:43,738 DEBUG Processing 8/702 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,782 DEBUG Processing 381/853 atomic regions from SNP 114270 to 114870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,786 DEBUG Processing 98/746 atomic regions from SNP 29148 to 29748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,837 DEBUG Processing 93/730 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:43,980 DEBUG Processing 9/702 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,016 DEBUG Processing 99/746 atomic regions from SNP 29448 to 30048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,018 DEBUG Processing 382/853 atomic regions from SNP 114570 to 115170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,057 DEBUG Processing 94/730 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:44,249 DEBUG Processing 10/702 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,260 DEBUG Processing 383/853 atomic regions from SNP 114870 to 115470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,262 DEBUG Processing 100/746 atomic regions from SNP 29748 to 30348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,279 DEBUG Processing 95/730 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:44,496 DEBUG Processing 96/730 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:44,497 DEBUG Processing 384/853 atomic regions from SNP 115170 to 115770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,509 DEBUG Processing 11/702 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,523 DEBUG Processing 101/746 atomic regions from SNP 30048 to 30648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,718 DEBUG Processing 97/730 atomic regions from SNP 28896 to 29497 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:44,741 DEBUG Processing 385/853 atomic regions from SNP 115470 to 116070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,776 DEBUG Processing 102/746 atomic regions from SNP 30348 to 30948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,779 DEBUG Processing 12/702 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,934 DEBUG Processing 98/730 atomic regions from SNP 29197 to 29798 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:44,980 DEBUG Processing 386/853 atomic regions from SNP 115770 to 116370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,016 DEBUG Processing 103/746 atomic regions from SNP 30648 to 31248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,042 DEBUG Processing 13/702 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,166 DEBUG Processing 99/730 atomic regions from SNP 29498 to 30099 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,228 DEBUG Processing 387/853 atomic regions from SNP 116070 to 116670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,253 DEBUG Processing 104/746 atomic regions from SNP 30948 to 31548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,301 DEBUG Processing 14/702 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,390 DEBUG Processing 100/730 atomic regions from SNP 29799 to 30400 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,471 DEBUG Processing 388/853 atomic regions from SNP 116370 to 116970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,490 DEBUG Processing 105/746 atomic regions from SNP 31248 to 31848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,569 DEBUG Processing 15/702 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,614 DEBUG Processing 101/730 atomic regions from SNP 30100 to 30701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,712 DEBUG Processing 389/853 atomic regions from SNP 116670 to 117270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,722 DEBUG Processing 106/746 atomic regions from SNP 31548 to 32148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,808 DEBUG Processing 16/702 atomic regions from SNP 4515 to 5115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,844 DEBUG Processing 102/730 atomic regions from SNP 30401 to 31002 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,957 DEBUG Processing 107/746 atomic regions from SNP 31848 to 32448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,979 DEBUG Processing 390/853 atomic regions from SNP 116970 to 117570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,038 DEBUG Processing 17/702 atomic regions from SNP 4815 to 5415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,064 DEBUG Processing 103/730 atomic regions from SNP 30702 to 31303 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,201 DEBUG Processing 108/746 atomic regions from SNP 32148 to 32748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,239 DEBUG Processing 391/853 atomic regions from SNP 117270 to 117870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,268 DEBUG Processing 18/702 atomic regions from SNP 5115 to 5715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,289 DEBUG Processing 104/730 atomic regions from SNP 31003 to 31604 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,433 DEBUG Processing 109/746 atomic regions from SNP 32448 to 33048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,468 DEBUG Processing 392/853 atomic regions from SNP 117570 to 118170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,498 DEBUG Processing 19/702 atomic regions from SNP 5415 to 6015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,505 DEBUG Processing 105/730 atomic regions from SNP 31304 to 31905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,665 DEBUG Processing 110/746 atomic regions from SNP 32748 to 33348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,697 DEBUG Processing 393/853 atomic regions from SNP 117870 to 118470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,725 DEBUG Processing 106/730 atomic regions from SNP 31605 to 32206 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,729 DEBUG Processing 20/702 atomic regions from SNP 5715 to 6315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,895 DEBUG Processing 111/746 atomic regions from SNP 33048 to 33648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,939 DEBUG Processing 394/853 atomic regions from SNP 118170 to 118770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,952 DEBUG Processing 107/730 atomic regions from SNP 31906 to 32507 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,955 DEBUG Processing 21/702 atomic regions from SNP 6015 to 6615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,128 DEBUG Processing 112/746 atomic regions from SNP 33348 to 33948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,189 DEBUG Processing 395/853 atomic regions from SNP 118470 to 119070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,190 DEBUG Processing 108/730 atomic regions from SNP 32207 to 32808 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,212 DEBUG Processing 22/702 atomic regions from SNP 6315 to 6915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,359 DEBUG Processing 113/746 atomic regions from SNP 33648 to 34248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,419 DEBUG Processing 109/730 atomic regions from SNP 32508 to 33109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,435 DEBUG Processing 396/853 atomic regions from SNP 118770 to 119370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,475 DEBUG Processing 23/702 atomic regions from SNP 6615 to 7215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,591 DEBUG Processing 114/746 atomic regions from SNP 33948 to 34548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,635 DEBUG Processing 110/730 atomic regions from SNP 32809 to 33410 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,687 DEBUG Processing 397/853 atomic regions from SNP 119070 to 119670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,735 DEBUG Processing 24/702 atomic regions from SNP 6915 to 7515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,820 DEBUG Processing 115/746 atomic regions from SNP 34248 to 34848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,846 DEBUG Processing 111/730 atomic regions from SNP 33110 to 33711 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,933 DEBUG Processing 398/853 atomic regions from SNP 119370 to 119970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,992 DEBUG Processing 25/702 atomic regions from SNP 7215 to 7815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,054 DEBUG Processing 116/746 atomic regions from SNP 34548 to 35148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,057 DEBUG Processing 112/730 atomic regions from SNP 33411 to 34012 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,186 DEBUG Processing 399/853 atomic regions from SNP 119670 to 120270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,220 DEBUG Processing 26/702 atomic regions from SNP 7515 to 8115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,268 DEBUG Processing 113/730 atomic regions from SNP 33712 to 34313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,286 DEBUG Processing 117/746 atomic regions from SNP 34848 to 35448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,450 DEBUG Processing 27/702 atomic regions from SNP 7815 to 8415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,452 DEBUG Processing 400/853 atomic regions from SNP 119970 to 120570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,481 DEBUG Processing 114/730 atomic regions from SNP 34013 to 34614 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,524 DEBUG Processing 118/746 atomic regions from SNP 35148 to 35748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,696 DEBUG Processing 28/702 atomic regions from SNP 8115 to 8715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,701 DEBUG Processing 115/730 atomic regions from SNP 34314 to 34915 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,725 DEBUG Processing 401/853 atomic regions from SNP 120270 to 120870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,759 DEBUG Processing 119/746 atomic regions from SNP 35448 to 36048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,930 DEBUG Processing 116/730 atomic regions from SNP 34615 to 35216 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,957 DEBUG Processing 29/702 atomic regions from SNP 8415 to 9015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,991 DEBUG Processing 402/853 atomic regions from SNP 120570 to 121170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,999 DEBUG Processing 120/746 atomic regions from SNP 35748 to 36348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,144 DEBUG Processing 117/730 atomic regions from SNP 34916 to 35517 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,216 DEBUG Processing 30/702 atomic regions from SNP 8715 to 9315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,230 DEBUG Processing 403/853 atomic regions from SNP 120870 to 121470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,239 DEBUG Processing 121/746 atomic regions from SNP 36048 to 36648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,349 DEBUG Processing 118/730 atomic regions from SNP 35217 to 35818 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,472 DEBUG Processing 31/702 atomic regions from SNP 9015 to 9615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,472 DEBUG Processing 404/853 atomic regions from SNP 121170 to 121770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,474 DEBUG Processing 122/746 atomic regions from SNP 36348 to 36948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,554 DEBUG Processing 119/730 atomic regions from SNP 35518 to 36119 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,706 DEBUG Processing 405/853 atomic regions from SNP 121470 to 122070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,707 DEBUG Processing 123/746 atomic regions from SNP 36648 to 37248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,733 DEBUG Processing 32/702 atomic regions from SNP 9315 to 9915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,763 DEBUG Processing 120/730 atomic regions from SNP 35819 to 36420 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,941 DEBUG Processing 406/853 atomic regions from SNP 121770 to 122370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,945 DEBUG Processing 124/746 atomic regions from SNP 36948 to 37548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,970 DEBUG Processing 121/730 atomic regions from SNP 36120 to 36721 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,991 DEBUG Processing 33/702 atomic regions from SNP 9615 to 10215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,180 DEBUG Processing 407/853 atomic regions from SNP 122070 to 122670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,186 DEBUG Processing 125/746 atomic regions from SNP 37248 to 37848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,187 DEBUG Processing 122/730 atomic regions from SNP 36421 to 37022 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,249 DEBUG Processing 34/702 atomic regions from SNP 9915 to 10515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,412 DEBUG Processing 408/853 atomic regions from SNP 122370 to 122970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,416 DEBUG Processing 126/746 atomic regions from SNP 37548 to 38148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,422 DEBUG Processing 123/730 atomic regions from SNP 36722 to 37323 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,502 DEBUG Processing 35/702 atomic regions from SNP 10215 to 10815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,644 DEBUG Processing 127/746 atomic regions from SNP 37848 to 38448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,644 DEBUG Processing 409/853 atomic regions from SNP 122670 to 123270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,651 DEBUG Processing 124/730 atomic regions from SNP 37023 to 37624 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,734 DEBUG Processing 36/702 atomic regions from SNP 10515 to 11115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,872 DEBUG Processing 125/730 atomic regions from SNP 37324 to 37925 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,873 DEBUG Processing 128/746 atomic regions from SNP 38148 to 38748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,875 DEBUG Processing 410/853 atomic regions from SNP 122970 to 123570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,893 DEBUG Subchromosome time: 389.6727814169135, subchromosome SNPs: 340095 2025-01-31 09:48:50,894 DEBUG Estimated BADs: [0.50, 2.98, 0.74, 2.98, 1.49, 8.93, 0.74, 2.98, 1.49, 2.98, 1.49, 2.98, 1.49, 7.44, 1.49, 2.98, 7.44, 2.98, 8.93, 0.74, 0.50, 1.49, 0.50, 2.98, 1.49, 0.74, 1.49, 4.47, 1.49, 0.37, 1.49, 0.37, 1.49, 4.47, 1.49, 2.98, 1.49, 4.47, 1.49, 10.42, 1.49, 8.93, 1.49, 2.98, 8.93, 2.98, 13.40, 1.49, 4.47, 2.98] SNP counts: [10788, 747, 40110, 11347, 8421, 125, 13291, 1255, 9989, 2757, 5111, 4637, 16249, 2067, 16926, 1742, 1426, 12324, 446, 8805, 8712, 6612, 16858, 3323, 5918, 3664, 10186, 10218, 5699, 5334, 2684, 7818, 10729, 3403, 6249, 4327, 4641, 1601, 2149, 340, 6652, 713, 12091, 4400, 1199, 7563, 184, 9812, 2238, 6215] SNP IDs counts: [10788, 747, 40110, 11347, 8421, 125, 13291, 1255, 9989, 2757, 5111, 4637, 16249, 2067, 16926, 1742, 1426, 12324, 446, 8805, 8712, 6612, 16858, 3323, 5918, 3664, 10186, 10218, 5699, 5334, 2684, 7818, 10729, 3403, 6249, 4327, 4641, 1601, 2149, 340, 6652, 713, 12091, 4400, 1199, 7563, 184, 9812, 2238, 6215] Critical gap: 758050bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.54Mbp, 9.94Mbp, 33.47Mbp, 39.56Mbp, 44.10Mbp, 44.17Mbp, 52.10Mbp, 52.79Mbp, 58.39Mbp, 59.88Mbp, 62.69Mbp, 65.21Mbp, 74.23Mbp, 75.39Mbp, 84.84Mbp, 86.27Mbp, 87.04Mbp, 93.60Mbp, 93.84Mbp, 99.23Mbp, 104.39Mbp, 108.14Mbp, 118.31Mbp, 120.06Mbp, 123.35Mbp, 125.43Mbp, 131.04Mbp, 136.40Mbp, 139.54Mbp, 142.79Mbp, 144.43Mbp, 149.12Mbp, 155.00Mbp, 156.84Mbp, 160.19Mbp, 162.53Mbp, 165.09Mbp, 165.96Mbp, 167.22Mbp, 167.39Mbp, 171.03Mbp, 171.41Mbp, 178.30Mbp, 180.64Mbp, 181.27Mbp, 185.42Mbp, 185.52Mbp, 190.75Mbp, 191.94Mbp, 195.47Mbp] 2025-01-31 09:48:50,894 DEBUG chr1 time: 389.67354341293685 s 2025-01-31 09:48:50,957 DEBUG Processing 37/702 atomic regions from SNP 10815 to 11415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,089 DEBUG Processing 126/730 atomic regions from SNP 37625 to 38226 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,105 DEBUG chr1: Fitting background model for 50 segments 2025-01-31 09:48:51,109 DEBUG Processing 411/853 atomic regions from SNP 123270 to 123870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,116 DEBUG Processing 129/746 atomic regions from SNP 38448 to 39048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,191 DEBUG Processing 38/702 atomic regions from SNP 11115 to 11715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,310 DEBUG Processing 127/730 atomic regions from SNP 37926 to 38527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,350 DEBUG Processing 412/853 atomic regions from SNP 123570 to 124170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,359 DEBUG Processing 130/746 atomic regions from SNP 38748 to 39348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,437 DEBUG Processing 39/702 atomic regions from SNP 11415 to 12015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,524 DEBUG Processing 128/730 atomic regions from SNP 38227 to 38828 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,587 DEBUG Processing 413/853 atomic regions from SNP 123870 to 124470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,594 DEBUG Processing 131/746 atomic regions from SNP 39048 to 39648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,693 DEBUG Processing 40/702 atomic regions from SNP 11715 to 12315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,739 DEBUG Processing 129/730 atomic regions from SNP 38528 to 39129 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,826 DEBUG Processing 414/853 atomic regions from SNP 124170 to 124770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,829 DEBUG Processing 132/746 atomic regions from SNP 39348 to 39948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,944 DEBUG Processing 130/730 atomic regions from SNP 38829 to 39430 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,952 DEBUG Processing 41/702 atomic regions from SNP 12015 to 12615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,060 DEBUG Processing 415/853 atomic regions from SNP 124470 to 125070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,073 DEBUG Processing 133/746 atomic regions from SNP 39648 to 40248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,155 DEBUG Processing 131/730 atomic regions from SNP 39130 to 39731 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,210 DEBUG Processing 42/702 atomic regions from SNP 12315 to 12915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,293 DEBUG Processing 416/853 atomic regions from SNP 124770 to 125370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,307 DEBUG Processing 134/746 atomic regions from SNP 39948 to 40548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,396 DEBUG Processing 132/730 atomic regions from SNP 39431 to 40032 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,468 DEBUG Processing 43/702 atomic regions from SNP 12615 to 13215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,524 DEBUG Processing 417/853 atomic regions from SNP 125070 to 125670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,535 DEBUG Processing 135/746 atomic regions from SNP 40248 to 40848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,646 DEBUG Processing 133/730 atomic regions from SNP 39732 to 40333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,715 DEBUG Processing 44/702 atomic regions from SNP 12915 to 13515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,765 DEBUG Processing 418/853 atomic regions from SNP 125370 to 125970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,767 DEBUG Processing 136/746 atomic regions from SNP 40548 to 41148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,861 DEBUG Processing 134/730 atomic regions from SNP 40033 to 40634 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,952 DEBUG Processing 45/702 atomic regions from SNP 13215 to 13815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,005 DEBUG Processing 137/746 atomic regions from SNP 40848 to 41448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,017 DEBUG Processing 419/853 atomic regions from SNP 125670 to 126270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,075 DEBUG Processing 135/730 atomic regions from SNP 40334 to 40935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,189 DEBUG Processing 46/702 atomic regions from SNP 13515 to 14115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,248 DEBUG Processing 138/746 atomic regions from SNP 41148 to 41748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,270 DEBUG Processing 420/853 atomic regions from SNP 125970 to 126570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,294 DEBUG Processing 136/730 atomic regions from SNP 40635 to 41236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,408 DEBUG Processing 47/702 atomic regions from SNP 13815 to 14415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,481 DEBUG Processing 139/746 atomic regions from SNP 41448 to 42048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,512 DEBUG Processing 137/730 atomic regions from SNP 40936 to 41537 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,515 DEBUG Processing 421/853 atomic regions from SNP 126270 to 126870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,632 DEBUG Processing 48/702 atomic regions from SNP 14115 to 14715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,711 DEBUG Processing 140/746 atomic regions from SNP 41748 to 42348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,729 DEBUG Processing 138/730 atomic regions from SNP 41237 to 41838 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,754 DEBUG Processing 422/853 atomic regions from SNP 126570 to 127170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,856 DEBUG Processing 49/702 atomic regions from SNP 14415 to 15015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,934 DEBUG Processing 141/746 atomic regions from SNP 42048 to 42648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,943 DEBUG Processing 139/730 atomic regions from SNP 41538 to 42139 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,992 DEBUG Processing 423/853 atomic regions from SNP 126870 to 127470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,081 DEBUG Processing 50/702 atomic regions from SNP 14715 to 15315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,153 DEBUG Processing 140/730 atomic regions from SNP 41839 to 42440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,164 DEBUG Processing 142/746 atomic regions from SNP 42348 to 42948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,225 DEBUG Processing 424/853 atomic regions from SNP 127170 to 127770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,306 DEBUG Processing 51/702 atomic regions from SNP 15015 to 15615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,363 DEBUG Processing 141/730 atomic regions from SNP 42140 to 42741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,396 DEBUG Processing 143/746 atomic regions from SNP 42648 to 43248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,459 DEBUG Processing 425/853 atomic regions from SNP 127470 to 128070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,528 DEBUG Processing 52/702 atomic regions from SNP 15315 to 15915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,575 DEBUG Processing 142/730 atomic regions from SNP 42441 to 43042 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,624 DEBUG Processing 144/746 atomic regions from SNP 42948 to 43548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,693 DEBUG Processing 426/853 atomic regions from SNP 127770 to 128370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,752 DEBUG Processing 53/702 atomic regions from SNP 15615 to 16215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,783 DEBUG Processing 143/730 atomic regions from SNP 42742 to 43343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,851 DEBUG Processing 145/746 atomic regions from SNP 43248 to 43848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,933 DEBUG Processing 427/853 atomic regions from SNP 128070 to 128670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,982 DEBUG Processing 54/702 atomic regions from SNP 15915 to 16515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,997 DEBUG Processing 144/730 atomic regions from SNP 43043 to 43644 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,075 DEBUG Processing 146/746 atomic regions from SNP 43548 to 44148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,174 DEBUG Processing 428/853 atomic regions from SNP 128370 to 128970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,216 DEBUG Processing 145/730 atomic regions from SNP 43344 to 43945 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,224 DEBUG Processing 55/702 atomic regions from SNP 16215 to 16815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,307 DEBUG Processing 147/746 atomic regions from SNP 43848 to 44448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,414 DEBUG Processing 429/853 atomic regions from SNP 128670 to 129270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,438 DEBUG Processing 146/730 atomic regions from SNP 43645 to 44246 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,450 DEBUG Processing 56/702 atomic regions from SNP 16515 to 17115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,534 DEBUG Processing 148/746 atomic regions from SNP 44148 to 44748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,654 DEBUG Processing 430/853 atomic regions from SNP 128970 to 129570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,660 DEBUG Processing 147/730 atomic regions from SNP 43946 to 44547 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,678 DEBUG Processing 57/702 atomic regions from SNP 16815 to 17415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,767 DEBUG Processing 149/746 atomic regions from SNP 44448 to 45048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,874 DEBUG Processing 148/730 atomic regions from SNP 44247 to 44848 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,888 DEBUG Processing 431/853 atomic regions from SNP 129270 to 129870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,900 DEBUG Processing 58/702 atomic regions from SNP 17115 to 17715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,997 DEBUG Processing 150/746 atomic regions from SNP 44748 to 45348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,088 DEBUG Processing 149/730 atomic regions from SNP 44548 to 45149 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,125 DEBUG Processing 432/853 atomic regions from SNP 129570 to 130170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,130 DEBUG Processing 59/702 atomic regions from SNP 17415 to 18015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,233 DEBUG Processing 151/746 atomic regions from SNP 45048 to 45648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,298 DEBUG Processing 150/730 atomic regions from SNP 44849 to 45450 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,349 DEBUG Processing 60/702 atomic regions from SNP 17715 to 18315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,349 DEBUG Processing 433/853 atomic regions from SNP 129870 to 130470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,463 DEBUG Processing 152/746 atomic regions from SNP 45348 to 45948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,507 DEBUG Processing 151/730 atomic regions from SNP 45150 to 45751 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,571 DEBUG Processing 434/853 atomic regions from SNP 130170 to 130770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,581 DEBUG Processing 61/702 atomic regions from SNP 18015 to 18615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,698 DEBUG Processing 153/746 atomic regions from SNP 45648 to 46248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,716 DEBUG Processing 152/730 atomic regions from SNP 45451 to 46052 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,805 DEBUG Processing 435/853 atomic regions from SNP 130470 to 131070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,834 DEBUG Processing 62/702 atomic regions from SNP 18315 to 18915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,917 DEBUG Processing 153/730 atomic regions from SNP 45752 to 46353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,922 DEBUG Processing 154/746 atomic regions from SNP 45948 to 46548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,037 DEBUG Processing 436/853 atomic regions from SNP 130770 to 131370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,081 DEBUG Processing 63/702 atomic regions from SNP 18615 to 19215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,125 DEBUG Processing 154/730 atomic regions from SNP 46053 to 46654 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,149 DEBUG Processing 155/746 atomic regions from SNP 46248 to 46848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,264 DEBUG Processing 437/853 atomic regions from SNP 131070 to 131670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,323 DEBUG Processing 64/702 atomic regions from SNP 18915 to 19515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,341 DEBUG Processing 155/730 atomic regions from SNP 46354 to 46955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,378 DEBUG Processing 156/746 atomic regions from SNP 46548 to 47148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,494 DEBUG Processing 438/853 atomic regions from SNP 131370 to 131970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,562 DEBUG Processing 156/730 atomic regions from SNP 46655 to 47256 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,572 DEBUG Processing 65/702 atomic regions from SNP 19215 to 19815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,620 DEBUG Processing 157/746 atomic regions from SNP 46848 to 47448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,725 DEBUG Processing 439/853 atomic regions from SNP 131670 to 132270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,773 DEBUG Processing 157/730 atomic regions from SNP 46956 to 47557 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,797 DEBUG Processing 66/702 atomic regions from SNP 19515 to 20115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,850 DEBUG Processing 158/746 atomic regions from SNP 47148 to 47748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,956 DEBUG Processing 440/853 atomic regions from SNP 131970 to 132570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,985 DEBUG Processing 158/730 atomic regions from SNP 47257 to 47858 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,022 DEBUG Processing 67/702 atomic regions from SNP 19815 to 20415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,079 DEBUG Processing 159/746 atomic regions from SNP 47448 to 48048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,189 DEBUG Processing 441/853 atomic regions from SNP 132270 to 132870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,199 DEBUG Processing 159/730 atomic regions from SNP 47558 to 48159 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,250 DEBUG Processing 68/702 atomic regions from SNP 20115 to 20715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,310 DEBUG Processing 160/746 atomic regions from SNP 47748 to 48348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,414 DEBUG Processing 160/730 atomic regions from SNP 47859 to 48460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,424 DEBUG Processing 442/853 atomic regions from SNP 132570 to 133170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,476 DEBUG Processing 69/702 atomic regions from SNP 20415 to 21015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,545 DEBUG Processing 161/746 atomic regions from SNP 48048 to 48648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,623 DEBUG Processing 161/730 atomic regions from SNP 48160 to 48761 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,655 DEBUG Processing 443/853 atomic regions from SNP 132870 to 133470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,699 DEBUG Processing 70/702 atomic regions from SNP 20715 to 21315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,778 DEBUG Processing 162/746 atomic regions from SNP 48348 to 48948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,835 DEBUG Processing 162/730 atomic regions from SNP 48461 to 49062 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,900 DEBUG Processing 444/853 atomic regions from SNP 133170 to 133770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,930 DEBUG Processing 71/702 atomic regions from SNP 21015 to 21615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,009 DEBUG Processing 163/746 atomic regions from SNP 48648 to 49248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,053 DEBUG Processing 163/730 atomic regions from SNP 48762 to 49363 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,133 DEBUG Processing 445/853 atomic regions from SNP 133470 to 134070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,158 DEBUG Processing 72/702 atomic regions from SNP 21315 to 21915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,247 DEBUG Processing 164/746 atomic regions from SNP 48948 to 49548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,270 DEBUG Processing 164/730 atomic regions from SNP 49063 to 49664 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,369 DEBUG Processing 446/853 atomic regions from SNP 133770 to 134370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,390 DEBUG Processing 73/702 atomic regions from SNP 21615 to 22215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,492 DEBUG Processing 165/730 atomic regions from SNP 49364 to 49965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,493 DEBUG Processing 165/746 atomic regions from SNP 49248 to 49848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,603 DEBUG Processing 447/853 atomic regions from SNP 134070 to 134670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,618 DEBUG Processing 74/702 atomic regions from SNP 21915 to 22515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,710 DEBUG Processing 166/730 atomic regions from SNP 49665 to 50266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,732 DEBUG Processing 166/746 atomic regions from SNP 49548 to 50148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,845 DEBUG Processing 448/853 atomic regions from SNP 134370 to 134970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,858 DEBUG Processing 75/702 atomic regions from SNP 22215 to 22815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,930 DEBUG Processing 167/730 atomic regions from SNP 49966 to 50567 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,973 DEBUG Processing 167/746 atomic regions from SNP 49848 to 50448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,101 DEBUG Processing 449/853 atomic regions from SNP 134670 to 135270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,116 DEBUG Processing 76/702 atomic regions from SNP 22515 to 23115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,174 DEBUG Processing 168/730 atomic regions from SNP 50267 to 50868 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,224 DEBUG Processing 168/746 atomic regions from SNP 50148 to 50748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,406 DEBUG Processing 450/853 atomic regions from SNP 134970 to 135570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,411 DEBUG Processing 77/702 atomic regions from SNP 22815 to 23415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,489 DEBUG Processing 169/730 atomic regions from SNP 50568 to 51169 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,523 DEBUG Processing 169/746 atomic regions from SNP 50448 to 51048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,637 DEBUG Processing 451/853 atomic regions from SNP 135270 to 135870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,641 DEBUG Processing 78/702 atomic regions from SNP 23115 to 23715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,727 DEBUG Processing 170/730 atomic regions from SNP 50869 to 51470 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,765 DEBUG Processing 170/746 atomic regions from SNP 50748 to 51348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,870 DEBUG Processing 452/853 atomic regions from SNP 135570 to 136170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,896 DEBUG Processing 79/702 atomic regions from SNP 23415 to 24015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,963 DEBUG Processing 171/730 atomic regions from SNP 51170 to 51771 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,005 DEBUG Processing 171/746 atomic regions from SNP 51048 to 51648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,100 DEBUG Processing 453/853 atomic regions from SNP 135870 to 136470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,147 DEBUG Processing 80/702 atomic regions from SNP 23715 to 24315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,199 DEBUG Processing 172/730 atomic regions from SNP 51471 to 52072 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,241 DEBUG Processing 172/746 atomic regions from SNP 51348 to 51948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,326 DEBUG Processing 454/853 atomic regions from SNP 136170 to 136770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,370 DEBUG Processing 81/702 atomic regions from SNP 24015 to 24615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,419 DEBUG Processing 173/730 atomic regions from SNP 51772 to 52373 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,480 DEBUG Processing 173/746 atomic regions from SNP 51648 to 52248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,567 DEBUG Processing 455/853 atomic regions from SNP 136470 to 137070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,591 DEBUG Processing 82/702 atomic regions from SNP 24315 to 24915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,636 DEBUG Processing 174/730 atomic regions from SNP 52073 to 52674 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,716 DEBUG Processing 174/746 atomic regions from SNP 51948 to 52548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,807 DEBUG Processing 456/853 atomic regions from SNP 136770 to 137370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,823 DEBUG Processing 83/702 atomic regions from SNP 24615 to 25215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,857 DEBUG Processing 175/730 atomic regions from SNP 52374 to 52975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,949 DEBUG Processing 175/746 atomic regions from SNP 52248 to 52848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,036 DEBUG Processing 457/853 atomic regions from SNP 137070 to 137670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,057 DEBUG Processing 84/702 atomic regions from SNP 24915 to 25515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,074 DEBUG Processing 176/730 atomic regions from SNP 52675 to 53276 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,187 DEBUG Processing 176/746 atomic regions from SNP 52548 to 53148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,267 DEBUG Processing 458/853 atomic regions from SNP 137370 to 137970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,292 DEBUG Processing 177/730 atomic regions from SNP 52976 to 53577 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,293 DEBUG Processing 85/702 atomic regions from SNP 25215 to 25815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,426 DEBUG Processing 177/746 atomic regions from SNP 52848 to 53448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,501 DEBUG Processing 459/853 atomic regions from SNP 137670 to 138270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,508 DEBUG Processing 178/730 atomic regions from SNP 53277 to 53878 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,523 DEBUG Processing 86/702 atomic regions from SNP 25515 to 26115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,659 DEBUG Processing 178/746 atomic regions from SNP 53148 to 53748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,721 DEBUG Processing 179/730 atomic regions from SNP 53578 to 54179 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,742 DEBUG Processing 460/853 atomic regions from SNP 137970 to 138570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,749 DEBUG Processing 87/702 atomic regions from SNP 25815 to 26415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,892 DEBUG Processing 179/746 atomic regions from SNP 53448 to 54048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,939 DEBUG Processing 180/730 atomic regions from SNP 53879 to 54480 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,983 DEBUG Processing 88/702 atomic regions from SNP 26115 to 26715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,003 DEBUG Processing 461/853 atomic regions from SNP 138270 to 138870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,118 DEBUG Processing 180/746 atomic regions from SNP 53748 to 54348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,153 DEBUG Processing 181/730 atomic regions from SNP 54180 to 54781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,218 DEBUG Processing 89/702 atomic regions from SNP 26415 to 27015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,277 DEBUG Processing 462/853 atomic regions from SNP 138570 to 139170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,338 DEBUG Processing 181/746 atomic regions from SNP 54048 to 54648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,364 DEBUG Processing 182/730 atomic regions from SNP 54481 to 55082 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,442 DEBUG Processing 90/702 atomic regions from SNP 26715 to 27315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,537 DEBUG Processing 463/853 atomic regions from SNP 138870 to 139470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,565 DEBUG Processing 182/746 atomic regions from SNP 54348 to 54948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,580 DEBUG Processing 183/730 atomic regions from SNP 54782 to 55383 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,661 DEBUG Processing 91/702 atomic regions from SNP 27015 to 27615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,795 DEBUG Processing 183/746 atomic regions from SNP 54648 to 55248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,799 DEBUG Processing 184/730 atomic regions from SNP 55083 to 55684 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,807 DEBUG Processing 464/853 atomic regions from SNP 139170 to 139770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,878 DEBUG Processing 92/702 atomic regions from SNP 27315 to 27915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,016 DEBUG Processing 185/730 atomic regions from SNP 55384 to 55985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,019 DEBUG Processing 184/746 atomic regions from SNP 54948 to 55548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,057 DEBUG Processing 465/853 atomic regions from SNP 139470 to 140070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,106 DEBUG Processing 93/702 atomic regions from SNP 27615 to 28215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,226 DEBUG Processing 186/730 atomic regions from SNP 55685 to 56286 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,246 DEBUG Processing 185/746 atomic regions from SNP 55248 to 55848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,292 DEBUG Processing 466/853 atomic regions from SNP 139770 to 140370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,326 DEBUG Processing 94/702 atomic regions from SNP 27915 to 28515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,439 DEBUG Processing 187/730 atomic regions from SNP 55986 to 56587 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,473 DEBUG Processing 186/746 atomic regions from SNP 55548 to 56148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,521 DEBUG Processing 467/853 atomic regions from SNP 140070 to 140670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,542 DEBUG Processing 95/702 atomic regions from SNP 28215 to 28815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,657 DEBUG Processing 188/730 atomic regions from SNP 56287 to 56888 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,706 DEBUG Processing 187/746 atomic regions from SNP 55848 to 56448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,758 DEBUG Processing 468/853 atomic regions from SNP 140370 to 140970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,767 DEBUG Processing 96/702 atomic regions from SNP 28515 to 29115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,870 DEBUG Processing 189/730 atomic regions from SNP 56588 to 57189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,941 DEBUG Processing 188/746 atomic regions from SNP 56148 to 56748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,996 DEBUG Processing 97/702 atomic regions from SNP 28815 to 29415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,997 DEBUG Processing 469/853 atomic regions from SNP 140670 to 141270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,088 DEBUG Processing 190/730 atomic regions from SNP 56889 to 57490 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,166 DEBUG Processing 189/746 atomic regions from SNP 56448 to 57048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,221 DEBUG Processing 98/702 atomic regions from SNP 29115 to 29715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,234 DEBUG Processing 470/853 atomic regions from SNP 140970 to 141570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,304 DEBUG Processing 191/730 atomic regions from SNP 57190 to 57791 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,390 DEBUG Processing 190/746 atomic regions from SNP 56748 to 57348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,444 DEBUG Processing 99/702 atomic regions from SNP 29415 to 30015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,462 DEBUG Processing 471/853 atomic regions from SNP 141270 to 141870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,525 DEBUG Processing 192/730 atomic regions from SNP 57491 to 58092 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,621 DEBUG Processing 191/746 atomic regions from SNP 57048 to 57648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,672 DEBUG Processing 100/702 atomic regions from SNP 29715 to 30315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,696 DEBUG Processing 472/853 atomic regions from SNP 141570 to 142170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,738 DEBUG Processing 193/730 atomic regions from SNP 57792 to 58393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,849 DEBUG Processing 192/746 atomic regions from SNP 57348 to 57948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,901 DEBUG Processing 101/702 atomic regions from SNP 30015 to 30615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,928 DEBUG Processing 473/853 atomic regions from SNP 141870 to 142470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,950 DEBUG Processing 194/730 atomic regions from SNP 58093 to 58694 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,075 DEBUG Processing 193/746 atomic regions from SNP 57648 to 58248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,128 DEBUG Processing 102/702 atomic regions from SNP 30315 to 30915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,161 DEBUG Processing 474/853 atomic regions from SNP 142170 to 142770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,164 DEBUG Processing 195/730 atomic regions from SNP 58394 to 58995 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,300 DEBUG Processing 194/746 atomic regions from SNP 57948 to 58548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,353 DEBUG Processing 103/702 atomic regions from SNP 30615 to 31215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,378 DEBUG Processing 196/730 atomic regions from SNP 58695 to 59296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,396 DEBUG Processing 475/853 atomic regions from SNP 142470 to 143070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,528 DEBUG Processing 195/746 atomic regions from SNP 58248 to 58848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,579 DEBUG Processing 104/702 atomic regions from SNP 30915 to 31515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,591 DEBUG Processing 197/730 atomic regions from SNP 58996 to 59597 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,652 DEBUG Processing 476/853 atomic regions from SNP 142770 to 143370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,756 DEBUG Processing 196/746 atomic regions from SNP 58548 to 59148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,800 DEBUG Processing 198/730 atomic regions from SNP 59297 to 59898 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,806 DEBUG Processing 105/702 atomic regions from SNP 31215 to 31815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,890 DEBUG Processing 477/853 atomic regions from SNP 143070 to 143670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,984 DEBUG Processing 197/746 atomic regions from SNP 58848 to 59448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,012 DEBUG Processing 199/730 atomic regions from SNP 59598 to 60199 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,031 DEBUG Processing 106/702 atomic regions from SNP 31515 to 32115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,128 DEBUG Processing 478/853 atomic regions from SNP 143370 to 143970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,213 DEBUG Processing 198/746 atomic regions from SNP 59148 to 59748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,220 DEBUG Processing 200/730 atomic regions from SNP 59899 to 60500 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,256 DEBUG Processing 107/702 atomic regions from SNP 31815 to 32415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,385 DEBUG Processing 479/853 atomic regions from SNP 143670 to 144270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,425 DEBUG Processing 201/730 atomic regions from SNP 60200 to 60801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,444 DEBUG Processing 199/746 atomic regions from SNP 59448 to 60048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,494 DEBUG Processing 108/702 atomic regions from SNP 32115 to 32715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,637 DEBUG Processing 202/730 atomic regions from SNP 60501 to 61102 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,637 DEBUG Processing 480/853 atomic regions from SNP 143970 to 144570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,672 DEBUG Processing 200/746 atomic regions from SNP 59748 to 60348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,748 DEBUG Processing 109/702 atomic regions from SNP 32415 to 33015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,852 DEBUG Processing 203/730 atomic regions from SNP 60802 to 61403 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,890 DEBUG Processing 481/853 atomic regions from SNP 144270 to 144870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,897 DEBUG Processing 201/746 atomic regions from SNP 60048 to 60648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,008 DEBUG Processing 110/702 atomic regions from SNP 32715 to 33315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,071 DEBUG Processing 204/730 atomic regions from SNP 61103 to 61704 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,127 DEBUG Processing 202/746 atomic regions from SNP 60348 to 60948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,169 DEBUG Processing 482/853 atomic regions from SNP 144570 to 145170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,259 DEBUG Processing 111/702 atomic regions from SNP 33015 to 33615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,291 DEBUG Processing 205/730 atomic regions from SNP 61404 to 62005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,360 DEBUG Processing 203/746 atomic regions from SNP 60648 to 61248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,442 DEBUG Processing 483/853 atomic regions from SNP 144870 to 145470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,507 DEBUG Processing 206/730 atomic regions from SNP 61705 to 62306 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,518 DEBUG Processing 112/702 atomic regions from SNP 33315 to 33915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,588 DEBUG Processing 204/746 atomic regions from SNP 60948 to 61548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,699 DEBUG Processing 484/853 atomic regions from SNP 145170 to 145770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,719 DEBUG Processing 207/730 atomic regions from SNP 62006 to 62607 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,777 DEBUG Processing 113/702 atomic regions from SNP 33615 to 34215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,815 DEBUG Processing 205/746 atomic regions from SNP 61248 to 61848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,933 DEBUG Processing 208/730 atomic regions from SNP 62307 to 62908 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,943 DEBUG Processing 485/853 atomic regions from SNP 145470 to 146070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,036 DEBUG Processing 114/702 atomic regions from SNP 33915 to 34515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,044 DEBUG Processing 206/746 atomic regions from SNP 61548 to 62148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,151 DEBUG Processing 209/730 atomic regions from SNP 62608 to 63209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,203 DEBUG Processing 486/853 atomic regions from SNP 145770 to 146370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,288 DEBUG Processing 207/746 atomic regions from SNP 61848 to 62448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,297 DEBUG Processing 115/702 atomic regions from SNP 34215 to 34815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,372 DEBUG Processing 210/730 atomic regions from SNP 62909 to 63510 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,455 DEBUG Processing 487/853 atomic regions from SNP 146070 to 146670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,525 DEBUG Processing 208/746 atomic regions from SNP 62148 to 62748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,570 DEBUG Processing 116/702 atomic regions from SNP 34515 to 35115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,579 DEBUG Processing 211/730 atomic regions from SNP 63210 to 63811 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,694 DEBUG Processing 488/853 atomic regions from SNP 146370 to 146970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,763 DEBUG Processing 209/746 atomic regions from SNP 62448 to 63048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,788 DEBUG Processing 212/730 atomic regions from SNP 63511 to 64112 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,839 DEBUG Processing 117/702 atomic regions from SNP 34815 to 35415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,935 DEBUG Processing 489/853 atomic regions from SNP 146670 to 147270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,995 DEBUG Processing 210/746 atomic regions from SNP 62748 to 63348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,003 DEBUG Processing 213/730 atomic regions from SNP 63812 to 64413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,104 DEBUG Processing 118/702 atomic regions from SNP 35115 to 35715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,209 DEBUG Processing 490/853 atomic regions from SNP 146970 to 147570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,223 DEBUG Processing 214/730 atomic regions from SNP 64113 to 64714 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,228 DEBUG Processing 211/746 atomic regions from SNP 63048 to 63648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,356 DEBUG Processing 119/702 atomic regions from SNP 35415 to 36015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,444 DEBUG Processing 215/730 atomic regions from SNP 64414 to 65015 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,463 DEBUG Processing 212/746 atomic regions from SNP 63348 to 63948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,481 DEBUG Processing 491/853 atomic regions from SNP 147270 to 147870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,583 DEBUG Processing 120/702 atomic regions from SNP 35715 to 36315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,664 DEBUG Processing 216/730 atomic regions from SNP 64715 to 65316 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,698 DEBUG Processing 213/746 atomic regions from SNP 63648 to 64248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,742 DEBUG Processing 492/853 atomic regions from SNP 147570 to 148170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,809 DEBUG Processing 121/702 atomic regions from SNP 36015 to 36615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,878 DEBUG Processing 217/730 atomic regions from SNP 65016 to 65617 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,922 DEBUG Processing 214/746 atomic regions from SNP 63948 to 64548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,991 DEBUG Processing 493/853 atomic regions from SNP 147870 to 148470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,037 DEBUG Processing 122/702 atomic regions from SNP 36315 to 36915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,096 DEBUG Processing 218/730 atomic regions from SNP 65317 to 65918 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,149 DEBUG Processing 215/746 atomic regions from SNP 64248 to 64848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,230 DEBUG Processing 494/853 atomic regions from SNP 148170 to 148770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,269 DEBUG Processing 123/702 atomic regions from SNP 36615 to 37215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,314 DEBUG Processing 219/730 atomic regions from SNP 65618 to 66219 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,395 DEBUG Processing 216/746 atomic regions from SNP 64548 to 65148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,477 DEBUG Processing 495/853 atomic regions from SNP 148470 to 149070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,505 DEBUG Processing 124/702 atomic regions from SNP 36915 to 37515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,528 DEBUG Processing 220/730 atomic regions from SNP 65919 to 66520 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,658 DEBUG Processing 217/746 atomic regions from SNP 64848 to 65448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,742 DEBUG Processing 496/853 atomic regions from SNP 148770 to 149370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,747 DEBUG Processing 221/730 atomic regions from SNP 66220 to 66821 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,753 DEBUG Processing 125/702 atomic regions from SNP 37215 to 37815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,910 DEBUG Processing 218/746 atomic regions from SNP 65148 to 65748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,962 DEBUG Processing 222/730 atomic regions from SNP 66521 to 67122 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,984 DEBUG Processing 126/702 atomic regions from SNP 37515 to 38115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,018 DEBUG Processing 497/853 atomic regions from SNP 149070 to 149670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,139 DEBUG Processing 219/746 atomic regions from SNP 65448 to 66048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,174 DEBUG Processing 223/730 atomic regions from SNP 66822 to 67423 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,215 DEBUG Processing 127/702 atomic regions from SNP 37815 to 38415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,276 DEBUG Processing 498/853 atomic regions from SNP 149370 to 149970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,363 DEBUG Processing 220/746 atomic regions from SNP 65748 to 66348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,386 DEBUG Processing 224/730 atomic regions from SNP 67123 to 67724 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,444 DEBUG Processing 128/702 atomic regions from SNP 38115 to 38715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,515 DEBUG Processing 499/853 atomic regions from SNP 149670 to 150270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,589 DEBUG Processing 221/746 atomic regions from SNP 66048 to 66648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,597 DEBUG Processing 225/730 atomic regions from SNP 67424 to 68025 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,670 DEBUG Processing 129/702 atomic regions from SNP 38415 to 39015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,775 DEBUG Processing 500/853 atomic regions from SNP 149970 to 150570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,810 DEBUG Processing 226/730 atomic regions from SNP 67725 to 68326 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,818 DEBUG Processing 222/746 atomic regions from SNP 66348 to 66948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,899 DEBUG Processing 130/702 atomic regions from SNP 38715 to 39315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,028 DEBUG Processing 501/853 atomic regions from SNP 150270 to 150870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,029 DEBUG Processing 227/730 atomic regions from SNP 68026 to 68627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,055 DEBUG Processing 223/746 atomic regions from SNP 66648 to 67248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,129 DEBUG Processing 131/702 atomic regions from SNP 39015 to 39615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,256 DEBUG Processing 228/730 atomic regions from SNP 68327 to 68928 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,304 DEBUG Processing 502/853 atomic regions from SNP 150570 to 151170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,306 DEBUG Processing 224/746 atomic regions from SNP 66948 to 67548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,363 DEBUG Processing 132/702 atomic regions from SNP 39315 to 39915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,473 DEBUG Processing 229/730 atomic regions from SNP 68628 to 69229 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,555 DEBUG Processing 503/853 atomic regions from SNP 150870 to 151470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,563 DEBUG Processing 225/746 atomic regions from SNP 67248 to 67848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,594 DEBUG Processing 133/702 atomic regions from SNP 39615 to 40215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,689 DEBUG Processing 230/730 atomic regions from SNP 68929 to 69530 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,789 DEBUG Processing 504/853 atomic regions from SNP 151170 to 151770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,801 DEBUG Processing 226/746 atomic regions from SNP 67548 to 68148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,825 DEBUG Processing 134/702 atomic regions from SNP 39915 to 40515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,904 DEBUG Processing 231/730 atomic regions from SNP 69230 to 69831 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,023 DEBUG Processing 505/853 atomic regions from SNP 151470 to 152070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,053 DEBUG Processing 227/746 atomic regions from SNP 67848 to 68448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,055 DEBUG Processing 135/702 atomic regions from SNP 40215 to 40815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,120 DEBUG Processing 232/730 atomic regions from SNP 69531 to 70132 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,254 DEBUG Processing 506/853 atomic regions from SNP 151770 to 152370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,301 DEBUG Processing 228/746 atomic regions from SNP 68148 to 68748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,302 DEBUG Processing 136/702 atomic regions from SNP 40515 to 41115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,332 DEBUG Processing 233/730 atomic regions from SNP 69832 to 70433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,507 DEBUG Processing 507/853 atomic regions from SNP 152070 to 152670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,542 DEBUG Processing 234/730 atomic regions from SNP 70133 to 70734 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,554 DEBUG Processing 137/702 atomic regions from SNP 40815 to 41415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,557 DEBUG Processing 229/746 atomic regions from SNP 68448 to 69048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,761 DEBUG Processing 235/730 atomic regions from SNP 70434 to 71035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,776 DEBUG Processing 508/853 atomic regions from SNP 152370 to 152970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,787 DEBUG Processing 138/702 atomic regions from SNP 41115 to 41715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,821 DEBUG Processing 230/746 atomic regions from SNP 68748 to 69348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,970 DEBUG Processing 236/730 atomic regions from SNP 70735 to 71336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,015 DEBUG Processing 139/702 atomic regions from SNP 41415 to 42015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,025 DEBUG Processing 509/853 atomic regions from SNP 152670 to 153270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,087 DEBUG Processing 231/746 atomic regions from SNP 69048 to 69648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,182 DEBUG Processing 237/730 atomic regions from SNP 71036 to 71637 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,240 DEBUG Processing 140/702 atomic regions from SNP 41715 to 42315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,286 DEBUG Processing 510/853 atomic regions from SNP 152970 to 153570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,337 DEBUG Processing 232/746 atomic regions from SNP 69348 to 69948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,393 DEBUG Processing 238/730 atomic regions from SNP 71337 to 71938 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,467 DEBUG Processing 141/702 atomic regions from SNP 42015 to 42615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,541 DEBUG Processing 511/853 atomic regions from SNP 153270 to 153870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,558 DEBUG Processing 233/746 atomic regions from SNP 69648 to 70248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,600 DEBUG Processing 239/730 atomic regions from SNP 71638 to 72239 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,690 DEBUG Processing 142/702 atomic regions from SNP 42315 to 42915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,784 DEBUG Processing 234/746 atomic regions from SNP 69948 to 70548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,791 DEBUG Processing 512/853 atomic regions from SNP 153570 to 154170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,812 DEBUG Processing 240/730 atomic regions from SNP 71939 to 72540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,908 DEBUG Processing 143/702 atomic regions from SNP 42615 to 43215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,014 DEBUG Processing 235/746 atomic regions from SNP 70248 to 70848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,030 DEBUG Processing 241/730 atomic regions from SNP 72240 to 72840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,049 DEBUG Processing 513/853 atomic regions from SNP 153870 to 154470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,131 DEBUG Processing 144/702 atomic regions from SNP 42915 to 43515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,242 DEBUG Processing 236/746 atomic regions from SNP 70548 to 71148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,265 DEBUG Processing 242/730 atomic regions from SNP 72540 to 73140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,296 DEBUG Processing 514/853 atomic regions from SNP 154170 to 154770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,349 DEBUG Processing 145/702 atomic regions from SNP 43215 to 43815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,483 DEBUG Processing 237/746 atomic regions from SNP 70848 to 71448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,484 DEBUG Processing 243/730 atomic regions from SNP 72840 to 73440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,542 DEBUG Processing 515/853 atomic regions from SNP 154470 to 155070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,571 DEBUG Processing 146/702 atomic regions from SNP 43515 to 44115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,718 DEBUG Processing 244/730 atomic regions from SNP 73140 to 73740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,738 DEBUG Processing 238/746 atomic regions from SNP 71148 to 71748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,786 DEBUG Processing 147/702 atomic regions from SNP 43815 to 44415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,795 DEBUG Processing 516/853 atomic regions from SNP 154770 to 155370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,943 DEBUG Processing 245/730 atomic regions from SNP 73440 to 74040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,974 DEBUG Processing 239/746 atomic regions from SNP 71448 to 72048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,006 DEBUG Processing 148/702 atomic regions from SNP 44115 to 44715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,050 DEBUG Processing 517/853 atomic regions from SNP 155070 to 155670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,154 DEBUG Processing 246/730 atomic regions from SNP 73740 to 74340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,196 DEBUG Processing 240/746 atomic regions from SNP 71748 to 72348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,230 DEBUG Processing 149/702 atomic regions from SNP 44415 to 45015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,279 DEBUG Processing 518/853 atomic regions from SNP 155370 to 155970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,367 DEBUG Processing 247/730 atomic regions from SNP 74040 to 74640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,414 DEBUG Processing 241/746 atomic regions from SNP 72048 to 72648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,452 DEBUG Processing 150/702 atomic regions from SNP 44715 to 45315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,511 DEBUG Processing 519/853 atomic regions from SNP 155670 to 156270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,580 DEBUG Processing 248/730 atomic regions from SNP 74340 to 74940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,640 DEBUG Processing 242/746 atomic regions from SNP 72348 to 72948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,678 DEBUG Processing 151/702 atomic regions from SNP 45015 to 45615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,753 DEBUG Processing 520/853 atomic regions from SNP 155970 to 156570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,789 DEBUG Processing 249/730 atomic regions from SNP 74640 to 75240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,879 DEBUG Processing 243/746 atomic regions from SNP 72648 to 73248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,914 DEBUG Processing 152/702 atomic regions from SNP 45315 to 45915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,985 DEBUG Processing 521/853 atomic regions from SNP 156270 to 156870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,996 DEBUG Processing 250/730 atomic regions from SNP 74940 to 75540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,111 DEBUG Processing 244/746 atomic regions from SNP 72948 to 73548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,144 DEBUG Processing 153/702 atomic regions from SNP 45615 to 46215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,224 DEBUG Processing 251/730 atomic regions from SNP 75240 to 75840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,227 DEBUG Processing 522/853 atomic regions from SNP 156570 to 157170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,336 DEBUG Processing 245/746 atomic regions from SNP 73248 to 73848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,370 DEBUG Processing 154/702 atomic regions from SNP 45915 to 46515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,436 DEBUG Processing 252/730 atomic regions from SNP 75540 to 76140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,464 DEBUG Processing 523/853 atomic regions from SNP 156870 to 157470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,567 DEBUG Processing 246/746 atomic regions from SNP 73548 to 74148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,600 DEBUG Processing 155/702 atomic regions from SNP 46215 to 46815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,648 DEBUG Processing 253/730 atomic regions from SNP 75840 to 76440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,699 DEBUG Processing 524/853 atomic regions from SNP 157170 to 157770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,800 DEBUG Processing 247/746 atomic regions from SNP 73848 to 74448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,834 DEBUG Processing 156/702 atomic regions from SNP 46515 to 47115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,862 DEBUG Processing 254/730 atomic regions from SNP 76140 to 76740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,930 DEBUG Processing 525/853 atomic regions from SNP 157470 to 158070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,030 DEBUG Processing 248/746 atomic regions from SNP 74148 to 74748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,065 DEBUG Processing 157/702 atomic regions from SNP 46815 to 47415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,073 DEBUG Processing 255/730 atomic regions from SNP 76440 to 77040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,156 DEBUG Processing 526/853 atomic regions from SNP 157770 to 158370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,255 DEBUG Processing 249/746 atomic regions from SNP 74448 to 75048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,283 DEBUG Processing 256/730 atomic regions from SNP 76740 to 77340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,293 DEBUG Processing 158/702 atomic regions from SNP 47115 to 47715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,383 DEBUG Processing 527/853 atomic regions from SNP 158070 to 158670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,477 DEBUG Processing 250/746 atomic regions from SNP 74748 to 75348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,486 DEBUG Processing 257/730 atomic regions from SNP 77040 to 77640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,516 DEBUG Processing 159/702 atomic regions from SNP 47415 to 48015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,608 DEBUG Processing 528/853 atomic regions from SNP 158370 to 158970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,686 DEBUG Processing 258/730 atomic regions from SNP 77340 to 77940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,706 DEBUG Processing 251/746 atomic regions from SNP 75048 to 75648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,738 DEBUG Processing 160/702 atomic regions from SNP 47715 to 48315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,836 DEBUG Processing 529/853 atomic regions from SNP 158670 to 159270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,887 DEBUG Processing 259/730 atomic regions from SNP 77640 to 78240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,933 DEBUG Processing 252/746 atomic regions from SNP 75348 to 75948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,962 DEBUG Processing 161/702 atomic regions from SNP 48015 to 48615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,064 DEBUG Processing 530/853 atomic regions from SNP 158970 to 159570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,091 DEBUG Processing 260/730 atomic regions from SNP 77940 to 78540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,163 DEBUG Processing 253/746 atomic regions from SNP 75648 to 76248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,191 DEBUG Processing 162/702 atomic regions from SNP 48315 to 48915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,293 DEBUG Processing 531/853 atomic regions from SNP 159270 to 159870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,296 DEBUG Processing 261/730 atomic regions from SNP 78240 to 78840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,389 DEBUG Processing 254/746 atomic regions from SNP 75948 to 76548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,417 DEBUG Processing 163/702 atomic regions from SNP 48615 to 49215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,498 DEBUG Processing 262/730 atomic regions from SNP 78540 to 79140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,518 DEBUG Processing 532/853 atomic regions from SNP 159570 to 160170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,614 DEBUG Processing 255/746 atomic regions from SNP 76248 to 76848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,643 DEBUG Processing 164/702 atomic regions from SNP 48915 to 49515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,712 DEBUG Processing 263/730 atomic regions from SNP 78840 to 79440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,776 DEBUG Processing 533/853 atomic regions from SNP 159870 to 160470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,852 DEBUG Processing 256/746 atomic regions from SNP 76548 to 77148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,877 DEBUG Processing 165/702 atomic regions from SNP 49215 to 49815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,920 DEBUG Processing 264/730 atomic regions from SNP 79140 to 79740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,004 DEBUG Processing 534/853 atomic regions from SNP 160170 to 160770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,085 DEBUG Processing 257/746 atomic regions from SNP 76848 to 77448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,108 DEBUG Processing 166/702 atomic regions from SNP 49515 to 50115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,128 DEBUG Processing 265/730 atomic regions from SNP 79440 to 80040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,236 DEBUG Processing 535/853 atomic regions from SNP 160470 to 161070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,320 DEBUG Processing 258/746 atomic regions from SNP 77148 to 77748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,337 DEBUG Processing 266/730 atomic regions from SNP 79740 to 80340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,344 DEBUG Processing 167/702 atomic regions from SNP 49815 to 50415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,456 DEBUG Processing 536/853 atomic regions from SNP 160770 to 161370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,544 DEBUG Processing 267/730 atomic regions from SNP 80040 to 80640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,551 DEBUG Processing 259/746 atomic regions from SNP 77448 to 78048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,576 DEBUG Processing 168/702 atomic regions from SNP 50115 to 50715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,679 DEBUG Processing 537/853 atomic regions from SNP 161070 to 161670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,745 DEBUG Processing 268/730 atomic regions from SNP 80340 to 80940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,779 DEBUG Processing 260/746 atomic regions from SNP 77748 to 78348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,802 DEBUG Processing 169/702 atomic regions from SNP 50415 to 51015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,906 DEBUG Processing 538/853 atomic regions from SNP 161370 to 161970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,948 DEBUG Processing 269/730 atomic regions from SNP 80640 to 81240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,005 DEBUG Processing 261/746 atomic regions from SNP 78048 to 78648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,023 DEBUG Processing 170/702 atomic regions from SNP 50715 to 51315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,132 DEBUG Processing 539/853 atomic regions from SNP 161670 to 162270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,155 DEBUG Processing 270/730 atomic regions from SNP 80940 to 81540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,232 DEBUG Processing 262/746 atomic regions from SNP 78348 to 78948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,247 DEBUG Processing 171/702 atomic regions from SNP 51015 to 51615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,354 DEBUG Processing 540/853 atomic regions from SNP 161970 to 162570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,360 DEBUG Processing 271/730 atomic regions from SNP 81240 to 81840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,455 DEBUG Processing 263/746 atomic regions from SNP 78648 to 79248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,469 DEBUG Processing 172/702 atomic regions from SNP 51315 to 51915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,564 DEBUG Processing 272/730 atomic regions from SNP 81540 to 82140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,577 DEBUG Processing 541/853 atomic regions from SNP 162270 to 162870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,675 DEBUG Processing 264/746 atomic regions from SNP 78948 to 79548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,689 DEBUG Processing 173/702 atomic regions from SNP 51615 to 52215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,769 DEBUG Processing 273/730 atomic regions from SNP 81840 to 82440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,801 DEBUG Processing 542/853 atomic regions from SNP 162570 to 163170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,900 DEBUG Processing 265/746 atomic regions from SNP 79248 to 79848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,913 DEBUG Processing 174/702 atomic regions from SNP 51915 to 52515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,976 DEBUG Processing 274/730 atomic regions from SNP 82140 to 82740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,027 DEBUG Processing 543/853 atomic regions from SNP 162870 to 163470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,129 DEBUG Processing 266/746 atomic regions from SNP 79548 to 80148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,144 DEBUG Processing 175/702 atomic regions from SNP 52215 to 52815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,184 DEBUG Processing 275/730 atomic regions from SNP 82440 to 83040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,251 DEBUG Processing 544/853 atomic regions from SNP 163170 to 163770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,362 DEBUG Processing 267/746 atomic regions from SNP 79848 to 80448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,387 DEBUG Processing 176/702 atomic regions from SNP 52515 to 53115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,392 DEBUG Processing 276/730 atomic regions from SNP 82740 to 83340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,476 DEBUG Processing 545/853 atomic regions from SNP 163470 to 164070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,596 DEBUG Processing 268/746 atomic regions from SNP 80148 to 80748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,603 DEBUG Processing 277/730 atomic regions from SNP 83040 to 83640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,620 DEBUG Processing 177/702 atomic regions from SNP 52815 to 53415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,704 DEBUG Processing 546/853 atomic regions from SNP 163770 to 164370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,811 DEBUG Processing 278/730 atomic regions from SNP 83340 to 83940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,829 DEBUG Processing 269/746 atomic regions from SNP 80448 to 81048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,848 DEBUG Processing 178/702 atomic regions from SNP 53115 to 53715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,935 DEBUG Processing 547/853 atomic regions from SNP 164070 to 164670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,021 DEBUG Processing 279/730 atomic regions from SNP 83640 to 84240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,063 DEBUG Processing 270/746 atomic regions from SNP 80748 to 81348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,079 DEBUG Processing 179/702 atomic regions from SNP 53415 to 54015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,192 DEBUG Processing 548/853 atomic regions from SNP 164370 to 164970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,230 DEBUG Processing 280/730 atomic regions from SNP 83940 to 84540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,292 DEBUG Processing 271/746 atomic regions from SNP 81048 to 81648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,301 DEBUG Processing 180/702 atomic regions from SNP 53715 to 54315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,427 DEBUG Processing 549/853 atomic regions from SNP 164670 to 165270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,440 DEBUG Processing 281/730 atomic regions from SNP 84240 to 84840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,517 DEBUG Processing 272/746 atomic regions from SNP 81348 to 81948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,523 DEBUG Processing 181/702 atomic regions from SNP 54015 to 54615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,646 DEBUG Processing 282/730 atomic regions from SNP 84540 to 85140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,651 DEBUG Processing 550/853 atomic regions from SNP 164970 to 165570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,754 DEBUG Processing 273/746 atomic regions from SNP 81648 to 82248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,755 DEBUG Processing 182/702 atomic regions from SNP 54315 to 54915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,857 DEBUG Processing 283/730 atomic regions from SNP 84840 to 85440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,882 DEBUG Processing 551/853 atomic regions from SNP 165270 to 165870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,992 DEBUG Processing 183/702 atomic regions from SNP 54615 to 55215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,994 DEBUG Processing 274/746 atomic regions from SNP 81948 to 82548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,079 DEBUG Processing 284/730 atomic regions from SNP 85140 to 85740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,134 DEBUG Processing 552/853 atomic regions from SNP 165570 to 166170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,233 DEBUG Processing 184/702 atomic regions from SNP 54915 to 55515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,238 DEBUG Processing 275/746 atomic regions from SNP 82248 to 82848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,299 DEBUG Processing 285/730 atomic regions from SNP 85440 to 86040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,385 DEBUG Processing 553/853 atomic regions from SNP 165870 to 166470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,472 DEBUG Processing 185/702 atomic regions from SNP 55215 to 55815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,479 DEBUG Processing 276/746 atomic regions from SNP 82548 to 83148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,517 DEBUG Processing 286/730 atomic regions from SNP 85740 to 86340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,622 DEBUG Processing 554/853 atomic regions from SNP 166170 to 166770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,713 DEBUG Processing 186/702 atomic regions from SNP 55515 to 56115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,719 DEBUG Processing 277/746 atomic regions from SNP 82848 to 83448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,734 DEBUG Processing 287/730 atomic regions from SNP 86040 to 86640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,855 DEBUG Processing 555/853 atomic regions from SNP 166470 to 167070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,942 DEBUG Processing 288/730 atomic regions from SNP 86340 to 86940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,948 DEBUG Processing 187/702 atomic regions from SNP 55815 to 56415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,952 DEBUG Processing 278/746 atomic regions from SNP 83148 to 83748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,075 DEBUG Processing 556/853 atomic regions from SNP 166770 to 167370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,150 DEBUG Processing 289/730 atomic regions from SNP 86640 to 87240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,179 DEBUG Processing 188/702 atomic regions from SNP 56115 to 56715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,187 DEBUG Processing 279/746 atomic regions from SNP 83448 to 84048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,305 DEBUG Processing 557/853 atomic regions from SNP 167070 to 167670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,366 DEBUG Processing 290/730 atomic regions from SNP 86940 to 87540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,415 DEBUG Processing 189/702 atomic regions from SNP 56415 to 57015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,421 DEBUG Processing 280/746 atomic regions from SNP 83748 to 84348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,532 DEBUG Processing 558/853 atomic regions from SNP 167370 to 167970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,579 DEBUG Processing 291/730 atomic regions from SNP 87240 to 87840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,643 DEBUG Processing 190/702 atomic regions from SNP 56715 to 57315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,647 DEBUG Processing 281/746 atomic regions from SNP 84048 to 84648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,757 DEBUG Processing 559/853 atomic regions from SNP 167670 to 168270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,789 DEBUG Processing 292/730 atomic regions from SNP 87540 to 88140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,872 DEBUG Processing 191/702 atomic regions from SNP 57015 to 57615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,873 DEBUG Processing 282/746 atomic regions from SNP 84348 to 84948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,988 DEBUG Processing 560/853 atomic regions from SNP 167970 to 168570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,003 DEBUG Processing 293/730 atomic regions from SNP 87840 to 88440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,108 DEBUG Processing 192/702 atomic regions from SNP 57315 to 57915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,110 DEBUG Processing 283/746 atomic regions from SNP 84648 to 85248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,216 DEBUG Processing 294/730 atomic regions from SNP 88140 to 88740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,220 DEBUG Processing 561/853 atomic regions from SNP 168270 to 168870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,339 DEBUG Processing 193/702 atomic regions from SNP 57615 to 58215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,341 DEBUG Processing 284/746 atomic regions from SNP 84948 to 85548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,429 DEBUG Processing 295/730 atomic regions from SNP 88440 to 89040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,452 DEBUG Processing 562/853 atomic regions from SNP 168570 to 169170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,573 DEBUG Processing 194/702 atomic regions from SNP 57915 to 58515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,574 DEBUG Processing 285/746 atomic regions from SNP 85248 to 85848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,637 DEBUG Processing 296/730 atomic regions from SNP 88740 to 89340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,688 DEBUG Processing 563/853 atomic regions from SNP 168870 to 169470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,813 DEBUG Processing 286/746 atomic regions from SNP 85548 to 86148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,813 DEBUG Processing 195/702 atomic regions from SNP 58215 to 58815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,848 DEBUG Processing 297/730 atomic regions from SNP 89040 to 89640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,932 DEBUG Processing 564/853 atomic regions from SNP 169170 to 169770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,058 DEBUG Processing 196/702 atomic regions from SNP 58515 to 59115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,058 DEBUG Processing 287/746 atomic regions from SNP 85848 to 86448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,060 DEBUG Processing 298/730 atomic regions from SNP 89340 to 89940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,166 DEBUG Processing 565/853 atomic regions from SNP 169470 to 170070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,273 DEBUG Processing 299/730 atomic regions from SNP 89640 to 90240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,295 DEBUG Processing 197/702 atomic regions from SNP 58815 to 59415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,298 DEBUG Processing 288/746 atomic regions from SNP 86148 to 86748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,397 DEBUG Processing 566/853 atomic regions from SNP 169770 to 170370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,480 DEBUG Processing 300/730 atomic regions from SNP 89940 to 90540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,531 DEBUG Processing 198/702 atomic regions from SNP 59115 to 59715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,537 DEBUG Processing 289/746 atomic regions from SNP 86448 to 87048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,626 DEBUG Processing 567/853 atomic regions from SNP 170070 to 170670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,684 DEBUG Processing 301/730 atomic regions from SNP 90240 to 90840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,764 DEBUG Processing 199/702 atomic regions from SNP 59415 to 60015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,772 DEBUG Processing 290/746 atomic regions from SNP 86748 to 87348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,855 DEBUG Processing 568/853 atomic regions from SNP 170370 to 170970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,886 DEBUG Processing 302/730 atomic regions from SNP 90540 to 91140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,993 DEBUG Processing 200/702 atomic regions from SNP 59715 to 60315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,002 DEBUG Processing 291/746 atomic regions from SNP 87048 to 87648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,087 DEBUG Processing 569/853 atomic regions from SNP 170670 to 171270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,093 DEBUG Processing 303/730 atomic regions from SNP 90840 to 91440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,223 DEBUG Processing 201/702 atomic regions from SNP 60015 to 60615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,236 DEBUG Processing 292/746 atomic regions from SNP 87348 to 87948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,302 DEBUG Processing 304/730 atomic regions from SNP 91140 to 91740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,318 DEBUG Processing 570/853 atomic regions from SNP 170970 to 171570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,453 DEBUG Processing 202/702 atomic regions from SNP 60315 to 60915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,472 DEBUG Processing 293/746 atomic regions from SNP 87648 to 88248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,514 DEBUG Processing 305/730 atomic regions from SNP 91440 to 92040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,559 DEBUG Processing 571/853 atomic regions from SNP 171270 to 171870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,684 DEBUG Processing 203/702 atomic regions from SNP 60615 to 61215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,717 DEBUG Processing 294/746 atomic regions from SNP 87948 to 88548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,722 DEBUG Processing 306/730 atomic regions from SNP 91740 to 92340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,787 DEBUG Processing 572/853 atomic regions from SNP 171570 to 172170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,917 DEBUG Processing 204/702 atomic regions from SNP 60915 to 61515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,926 DEBUG Processing 307/730 atomic regions from SNP 92040 to 92640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,958 DEBUG Processing 295/746 atomic regions from SNP 88248 to 88848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,017 DEBUG Processing 573/853 atomic regions from SNP 171870 to 172470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,136 DEBUG Processing 308/730 atomic regions from SNP 92340 to 92940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,153 DEBUG Processing 205/702 atomic regions from SNP 61215 to 61815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,199 DEBUG Processing 296/746 atomic regions from SNP 88548 to 89148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,245 DEBUG Processing 574/853 atomic regions from SNP 172170 to 172770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,350 DEBUG Processing 309/730 atomic regions from SNP 92640 to 93240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,391 DEBUG Processing 206/702 atomic regions from SNP 61515 to 62115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,437 DEBUG Processing 297/746 atomic regions from SNP 88848 to 89448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,477 DEBUG Processing 575/853 atomic regions from SNP 172470 to 173070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,561 DEBUG Processing 310/730 atomic regions from SNP 92940 to 93540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,629 DEBUG Processing 207/702 atomic regions from SNP 61815 to 62415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,682 DEBUG Processing 298/746 atomic regions from SNP 89148 to 89748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,711 DEBUG Processing 576/853 atomic regions from SNP 172770 to 173370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,771 DEBUG Processing 311/730 atomic regions from SNP 93240 to 93840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,865 DEBUG Processing 208/702 atomic regions from SNP 62115 to 62715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,919 DEBUG Processing 299/746 atomic regions from SNP 89448 to 90048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,945 DEBUG Processing 577/853 atomic regions from SNP 173070 to 173670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,984 DEBUG Processing 312/730 atomic regions from SNP 93540 to 94140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,097 DEBUG Processing 209/702 atomic regions from SNP 62415 to 63015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,151 DEBUG Processing 300/746 atomic regions from SNP 89748 to 90348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,177 DEBUG Processing 578/853 atomic regions from SNP 173370 to 173970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,206 DEBUG Processing 313/730 atomic regions from SNP 93840 to 94440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,351 DEBUG Processing 210/702 atomic regions from SNP 62715 to 63315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,393 DEBUG Processing 301/746 atomic regions from SNP 90048 to 90648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,410 DEBUG Processing 579/853 atomic regions from SNP 173670 to 174270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,418 DEBUG Processing 314/730 atomic regions from SNP 94140 to 94740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,592 DEBUG Processing 211/702 atomic regions from SNP 63015 to 63615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,631 DEBUG Processing 302/746 atomic regions from SNP 90348 to 90948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,636 DEBUG Processing 315/730 atomic regions from SNP 94440 to 95040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,645 DEBUG Processing 580/853 atomic regions from SNP 173970 to 174570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,833 DEBUG Processing 212/702 atomic regions from SNP 63315 to 63915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,858 DEBUG Processing 316/730 atomic regions from SNP 94740 to 95340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,871 DEBUG Processing 303/746 atomic regions from SNP 90648 to 91248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,889 DEBUG Processing 581/853 atomic regions from SNP 174270 to 174870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,075 DEBUG Processing 317/730 atomic regions from SNP 95040 to 95640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,077 DEBUG Processing 213/702 atomic regions from SNP 63615 to 64215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,111 DEBUG Processing 304/746 atomic regions from SNP 90948 to 91548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,126 DEBUG Processing 582/853 atomic regions from SNP 174570 to 175170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,292 DEBUG Processing 318/730 atomic regions from SNP 95340 to 95940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,319 DEBUG Processing 214/702 atomic regions from SNP 63915 to 64515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,355 DEBUG Processing 305/746 atomic regions from SNP 91248 to 91848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,364 DEBUG Processing 583/853 atomic regions from SNP 174870 to 175470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,502 DEBUG Processing 319/730 atomic regions from SNP 95640 to 96240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,553 DEBUG Processing 215/702 atomic regions from SNP 64215 to 64815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,596 DEBUG Processing 584/853 atomic regions from SNP 175170 to 175770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,601 DEBUG Processing 306/746 atomic regions from SNP 91548 to 92148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,712 DEBUG Processing 320/730 atomic regions from SNP 95940 to 96540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,798 DEBUG Processing 216/702 atomic regions from SNP 64515 to 65115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,835 DEBUG Processing 585/853 atomic regions from SNP 175470 to 176070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,845 DEBUG Processing 307/746 atomic regions from SNP 91848 to 92448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,925 DEBUG Processing 321/730 atomic regions from SNP 96240 to 96840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,069 DEBUG Processing 586/853 atomic regions from SNP 175770 to 176370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,070 DEBUG Processing 217/702 atomic regions from SNP 64815 to 65415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,090 DEBUG Processing 308/746 atomic regions from SNP 92148 to 92748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,139 DEBUG Processing 322/730 atomic regions from SNP 96540 to 97140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,308 DEBUG Processing 587/853 atomic regions from SNP 176070 to 176670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,327 DEBUG Processing 218/702 atomic regions from SNP 65115 to 65715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,336 DEBUG Processing 309/746 atomic regions from SNP 92448 to 93048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,354 DEBUG Processing 323/730 atomic regions from SNP 96840 to 97440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,553 DEBUG Processing 588/853 atomic regions from SNP 176370 to 176970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,566 DEBUG Processing 219/702 atomic regions from SNP 65415 to 66015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,579 DEBUG Processing 310/746 atomic regions from SNP 92748 to 93348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,581 DEBUG Processing 324/730 atomic regions from SNP 97140 to 97740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,792 DEBUG Processing 589/853 atomic regions from SNP 176670 to 177270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,806 DEBUG Processing 220/702 atomic regions from SNP 65715 to 66315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,807 DEBUG Processing 325/730 atomic regions from SNP 97440 to 98040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,823 DEBUG Processing 311/746 atomic regions from SNP 93048 to 93648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,033 DEBUG Processing 326/730 atomic regions from SNP 97740 to 98340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,037 DEBUG Processing 590/853 atomic regions from SNP 176970 to 177570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,045 DEBUG Processing 221/702 atomic regions from SNP 66015 to 66615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,068 DEBUG Processing 312/746 atomic regions from SNP 93348 to 93948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,256 DEBUG Processing 327/730 atomic regions from SNP 98040 to 98640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,278 DEBUG Processing 591/853 atomic regions from SNP 177270 to 177870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,287 DEBUG Processing 222/702 atomic regions from SNP 66315 to 66915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,313 DEBUG Processing 313/746 atomic regions from SNP 93648 to 94248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,474 DEBUG Processing 328/730 atomic regions from SNP 98340 to 98940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,523 DEBUG Processing 223/702 atomic regions from SNP 66615 to 67215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,524 DEBUG Processing 592/853 atomic regions from SNP 177570 to 178170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,559 DEBUG Processing 314/746 atomic regions from SNP 93948 to 94548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,693 DEBUG Processing 329/730 atomic regions from SNP 98640 to 99240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,758 DEBUG Processing 224/702 atomic regions from SNP 66915 to 67515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,759 DEBUG Processing 593/853 atomic regions from SNP 177870 to 178470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,797 DEBUG Processing 315/746 atomic regions from SNP 94248 to 94848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,913 DEBUG Processing 330/730 atomic regions from SNP 98940 to 99540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,995 DEBUG Processing 225/702 atomic regions from SNP 67215 to 67815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,995 DEBUG Processing 594/853 atomic regions from SNP 178170 to 178770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,040 DEBUG Processing 316/746 atomic regions from SNP 94548 to 95148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,126 DEBUG Processing 331/730 atomic regions from SNP 99240 to 99840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,229 DEBUG Processing 595/853 atomic regions from SNP 178470 to 179070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,230 DEBUG Processing 226/702 atomic regions from SNP 67515 to 68115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,281 DEBUG Processing 317/746 atomic regions from SNP 94848 to 95448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,339 DEBUG Processing 332/730 atomic regions from SNP 99540 to 100140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,458 DEBUG Processing 596/853 atomic regions from SNP 178770 to 179370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,463 DEBUG Processing 227/702 atomic regions from SNP 67815 to 68415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,518 DEBUG Processing 318/746 atomic regions from SNP 95148 to 95748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,549 DEBUG Processing 333/730 atomic regions from SNP 99840 to 100440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,690 DEBUG Processing 597/853 atomic regions from SNP 179070 to 179670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,697 DEBUG Processing 228/702 atomic regions from SNP 68115 to 68715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,756 DEBUG Processing 334/730 atomic regions from SNP 100140 to 100740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,777 DEBUG Processing 319/746 atomic regions from SNP 95448 to 96048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,918 DEBUG Processing 598/853 atomic regions from SNP 179370 to 179970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,937 DEBUG Processing 229/702 atomic regions from SNP 68415 to 69015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,964 DEBUG Processing 335/730 atomic regions from SNP 100440 to 101040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,034 DEBUG Processing 320/746 atomic regions from SNP 95748 to 96348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,154 DEBUG Processing 599/853 atomic regions from SNP 179670 to 180270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,182 DEBUG Processing 336/730 atomic regions from SNP 100740 to 101340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,200 DEBUG Processing 230/702 atomic regions from SNP 68715 to 69315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,278 DEBUG Processing 321/746 atomic regions from SNP 96048 to 96648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,394 DEBUG Processing 337/730 atomic regions from SNP 101040 to 101640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,395 DEBUG Processing 600/853 atomic regions from SNP 179970 to 180570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,450 DEBUG Processing 231/702 atomic regions from SNP 69015 to 69615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,519 DEBUG Processing 322/746 atomic regions from SNP 96348 to 96948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,611 DEBUG Processing 338/730 atomic regions from SNP 101340 to 101940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,629 DEBUG Processing 601/853 atomic regions from SNP 180270 to 180870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,691 DEBUG Processing 232/702 atomic regions from SNP 69315 to 69915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,756 DEBUG Processing 323/746 atomic regions from SNP 96648 to 97248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,825 DEBUG Processing 339/730 atomic regions from SNP 101640 to 102240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,864 DEBUG Processing 602/853 atomic regions from SNP 180570 to 181170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,935 DEBUG Processing 233/702 atomic regions from SNP 69615 to 70215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,994 DEBUG Processing 324/746 atomic regions from SNP 96948 to 97548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,035 DEBUG Processing 340/730 atomic regions from SNP 101940 to 102540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,097 DEBUG Processing 603/853 atomic regions from SNP 180870 to 181470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,177 DEBUG Processing 234/702 atomic regions from SNP 69915 to 70515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,236 DEBUG Processing 325/746 atomic regions from SNP 97248 to 97848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,247 DEBUG Processing 341/730 atomic regions from SNP 102240 to 102840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,328 DEBUG Processing 604/853 atomic regions from SNP 181170 to 181770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,414 DEBUG Processing 235/702 atomic regions from SNP 70215 to 70815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,462 DEBUG Processing 342/730 atomic regions from SNP 102540 to 103140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,479 DEBUG Processing 326/746 atomic regions from SNP 97548 to 98148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,566 DEBUG Processing 605/853 atomic regions from SNP 181470 to 182070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,655 DEBUG Processing 236/702 atomic regions from SNP 70515 to 71115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,677 DEBUG Processing 343/730 atomic regions from SNP 102840 to 103440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,718 DEBUG Processing 327/746 atomic regions from SNP 97848 to 98448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,799 DEBUG Processing 606/853 atomic regions from SNP 181770 to 182370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,893 DEBUG Processing 344/730 atomic regions from SNP 103140 to 103740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,902 DEBUG Processing 237/702 atomic regions from SNP 70815 to 71415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,963 DEBUG Processing 328/746 atomic regions from SNP 98148 to 98748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,032 DEBUG Processing 607/853 atomic regions from SNP 182070 to 182670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,113 DEBUG Processing 345/730 atomic regions from SNP 103440 to 104040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,144 DEBUG Processing 238/702 atomic regions from SNP 71115 to 71715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,239 DEBUG Processing 329/746 atomic regions from SNP 98448 to 99048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,279 DEBUG Processing 608/853 atomic regions from SNP 182370 to 182970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,343 DEBUG Processing 346/730 atomic regions from SNP 103740 to 104340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,382 DEBUG Processing 239/702 atomic regions from SNP 71415 to 72015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,505 DEBUG Processing 330/746 atomic regions from SNP 98748 to 99348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,521 DEBUG Processing 609/853 atomic regions from SNP 182670 to 183270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,564 DEBUG Processing 347/730 atomic regions from SNP 104040 to 104640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,614 DEBUG Processing 240/702 atomic regions from SNP 71715 to 72315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,760 DEBUG Processing 610/853 atomic regions from SNP 182970 to 183570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,771 DEBUG Processing 331/746 atomic regions from SNP 99048 to 99648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,784 DEBUG Processing 348/730 atomic regions from SNP 104340 to 104940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,864 DEBUG Processing 241/702 atomic regions from SNP 72015 to 72615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,998 DEBUG Processing 611/853 atomic regions from SNP 183270 to 183870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,003 DEBUG Processing 349/730 atomic regions from SNP 104640 to 105240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,032 DEBUG Processing 332/746 atomic regions from SNP 99348 to 99948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,102 DEBUG Processing 242/702 atomic regions from SNP 72315 to 72915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,220 DEBUG Processing 350/730 atomic regions from SNP 104940 to 105540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,235 DEBUG Processing 612/853 atomic regions from SNP 183570 to 184170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,270 DEBUG Processing 333/746 atomic regions from SNP 99648 to 100248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,332 DEBUG Processing 243/702 atomic regions from SNP 72615 to 73215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,433 DEBUG Processing 351/730 atomic regions from SNP 105240 to 105840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,469 DEBUG Processing 613/853 atomic regions from SNP 183870 to 184470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,507 DEBUG Processing 334/746 atomic regions from SNP 99948 to 100548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,568 DEBUG Processing 244/702 atomic regions from SNP 72915 to 73515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,653 DEBUG Processing 352/730 atomic regions from SNP 105540 to 106140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,713 DEBUG Processing 614/853 atomic regions from SNP 184170 to 184770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,746 DEBUG Processing 335/746 atomic regions from SNP 100248 to 100848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,810 DEBUG Processing 245/702 atomic regions from SNP 73215 to 73815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,877 DEBUG Processing 353/730 atomic regions from SNP 105840 to 106440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,957 DEBUG Processing 615/853 atomic regions from SNP 184470 to 185070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,989 DEBUG Processing 336/746 atomic regions from SNP 100548 to 101148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,045 DEBUG Processing 246/702 atomic regions from SNP 73515 to 74115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,099 DEBUG Processing 354/730 atomic regions from SNP 106140 to 106740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,207 DEBUG Processing 616/853 atomic regions from SNP 184770 to 185370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,246 DEBUG Processing 337/746 atomic regions from SNP 100848 to 101448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,284 DEBUG Processing 247/702 atomic regions from SNP 73815 to 74415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,321 DEBUG Processing 355/730 atomic regions from SNP 106440 to 107040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,447 DEBUG Processing 617/853 atomic regions from SNP 185070 to 185670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,497 DEBUG Processing 338/746 atomic regions from SNP 101148 to 101748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,526 DEBUG Processing 248/702 atomic regions from SNP 74115 to 74715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,549 DEBUG Processing 356/730 atomic regions from SNP 106740 to 107340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,696 DEBUG Processing 618/853 atomic regions from SNP 185370 to 185970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,776 DEBUG Processing 249/702 atomic regions from SNP 74415 to 75015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,778 DEBUG Processing 339/746 atomic regions from SNP 101448 to 102048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,783 DEBUG Processing 357/730 atomic regions from SNP 107040 to 107640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,941 DEBUG Processing 619/853 atomic regions from SNP 185670 to 186270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,011 DEBUG Processing 358/730 atomic regions from SNP 107340 to 107940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,022 DEBUG Processing 250/702 atomic regions from SNP 74715 to 75315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,049 DEBUG Processing 340/746 atomic regions from SNP 101748 to 102348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,183 DEBUG Processing 620/853 atomic regions from SNP 185970 to 186570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,233 DEBUG Processing 359/730 atomic regions from SNP 107640 to 108240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,269 DEBUG Processing 251/702 atomic regions from SNP 75015 to 75615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,309 DEBUG Processing 341/746 atomic regions from SNP 102048 to 102648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,425 DEBUG Processing 621/853 atomic regions from SNP 186270 to 186870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,454 DEBUG Processing 360/730 atomic regions from SNP 107940 to 108540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,513 DEBUG Processing 252/702 atomic regions from SNP 75315 to 75915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,560 DEBUG Processing 342/746 atomic regions from SNP 102348 to 102948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,663 DEBUG Processing 622/853 atomic regions from SNP 186570 to 187170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,671 DEBUG Processing 361/730 atomic regions from SNP 108240 to 108840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,751 DEBUG Processing 253/702 atomic regions from SNP 75615 to 76215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,806 DEBUG Processing 343/746 atomic regions from SNP 102648 to 103248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,884 DEBUG Processing 362/730 atomic regions from SNP 108540 to 109140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,898 DEBUG Processing 623/853 atomic regions from SNP 186870 to 187470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,983 DEBUG Processing 254/702 atomic regions from SNP 75915 to 76515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,080 DEBUG Processing 344/746 atomic regions from SNP 102948 to 103548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,097 DEBUG Processing 363/730 atomic regions from SNP 108840 to 109440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,132 DEBUG Processing 624/853 atomic regions from SNP 187170 to 187770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,213 DEBUG Processing 255/702 atomic regions from SNP 76215 to 76815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,314 DEBUG Processing 364/730 atomic regions from SNP 109140 to 109740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,353 DEBUG Processing 345/746 atomic regions from SNP 103248 to 103848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,376 DEBUG Processing 625/853 atomic regions from SNP 187470 to 188070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,443 DEBUG Processing 256/702 atomic regions from SNP 76515 to 77115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,527 DEBUG Processing 365/730 atomic regions from SNP 109440 to 110040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,615 DEBUG Processing 346/746 atomic regions from SNP 103548 to 104148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,621 DEBUG Processing 626/853 atomic regions from SNP 187770 to 188370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,676 DEBUG Processing 257/702 atomic regions from SNP 76815 to 77415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,736 DEBUG Processing 366/730 atomic regions from SNP 109740 to 110340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,865 DEBUG Processing 627/853 atomic regions from SNP 188070 to 188670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,869 DEBUG Processing 347/746 atomic regions from SNP 103848 to 104448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,908 DEBUG Processing 258/702 atomic regions from SNP 77115 to 77715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,949 DEBUG Processing 367/730 atomic regions from SNP 110040 to 110640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,109 DEBUG Processing 628/853 atomic regions from SNP 188370 to 188970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,134 DEBUG Processing 348/746 atomic regions from SNP 104148 to 104748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,147 DEBUG Processing 259/702 atomic regions from SNP 77415 to 78015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,165 DEBUG Processing 368/730 atomic regions from SNP 110340 to 110940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,354 DEBUG Processing 629/853 atomic regions from SNP 188670 to 189270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,387 DEBUG Processing 369/730 atomic regions from SNP 110640 to 111240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,389 DEBUG Processing 260/702 atomic regions from SNP 77715 to 78315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,394 DEBUG Processing 349/746 atomic regions from SNP 104448 to 105048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,586 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:49:43,597 DEBUG Processing 630/853 atomic regions from SNP 188970 to 189570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,611 DEBUG Processing 370/730 atomic regions from SNP 110940 to 111540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,630 DEBUG Processing 261/702 atomic regions from SNP 78015 to 78615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,659 DEBUG Processing 350/746 atomic regions from SNP 104748 to 105348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,836 DEBUG Processing 371/730 atomic regions from SNP 111240 to 111840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,845 DEBUG Processing 631/853 atomic regions from SNP 189270 to 189870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,874 DEBUG Processing 262/702 atomic regions from SNP 78315 to 78915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,931 DEBUG Processing 351/746 atomic regions from SNP 105048 to 105648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,053 DEBUG Processing 372/730 atomic regions from SNP 111540 to 112140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,087 DEBUG Processing 632/853 atomic regions from SNP 189570 to 190170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,120 DEBUG Processing 263/702 atomic regions from SNP 78615 to 79215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,195 DEBUG Processing 352/746 atomic regions from SNP 105348 to 105948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,267 DEBUG Processing 373/730 atomic regions from SNP 111840 to 112440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,329 DEBUG Processing 633/853 atomic regions from SNP 189870 to 190470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,359 DEBUG Processing 264/702 atomic regions from SNP 78915 to 79515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,436 DEBUG Processing 353/746 atomic regions from SNP 105648 to 106248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,480 DEBUG Processing 374/730 atomic regions from SNP 112140 to 112740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,570 DEBUG Processing 634/853 atomic regions from SNP 190170 to 190770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,602 DEBUG Processing 265/702 atomic regions from SNP 79215 to 79815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,673 DEBUG Processing 354/746 atomic regions from SNP 105948 to 106548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,722 DEBUG Processing 375/730 atomic regions from SNP 112440 to 113040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,815 DEBUG Processing 635/853 atomic regions from SNP 190470 to 191070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,852 DEBUG Processing 266/702 atomic regions from SNP 79515 to 80115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,914 DEBUG Processing 355/746 atomic regions from SNP 106248 to 106848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,965 DEBUG Processing 376/730 atomic regions from SNP 112740 to 113340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,051 DEBUG Processing 636/853 atomic regions from SNP 190770 to 191370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,091 DEBUG Processing 267/702 atomic regions from SNP 79815 to 80415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,151 DEBUG Processing 356/746 atomic regions from SNP 106548 to 107148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,211 DEBUG Processing 377/730 atomic regions from SNP 113040 to 113640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,285 DEBUG Processing 637/853 atomic regions from SNP 191070 to 191670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,328 DEBUG Processing 268/702 atomic regions from SNP 80115 to 80715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,395 DEBUG Processing 357/746 atomic regions from SNP 106848 to 107448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,468 DEBUG Processing 378/730 atomic regions from SNP 113340 to 113940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,527 DEBUG Processing 638/853 atomic regions from SNP 191370 to 191970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,569 DEBUG Processing 269/702 atomic regions from SNP 80415 to 81015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,639 DEBUG Processing 358/746 atomic regions from SNP 107148 to 107748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,722 DEBUG Processing 379/730 atomic regions from SNP 113640 to 114240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,770 DEBUG Processing 639/853 atomic regions from SNP 191670 to 192270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,810 DEBUG Processing 270/702 atomic regions from SNP 80715 to 81315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,880 DEBUG Processing 359/746 atomic regions from SNP 107448 to 108048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,973 DEBUG Processing 380/730 atomic regions from SNP 113940 to 114540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,030 DEBUG Processing 640/853 atomic regions from SNP 191970 to 192570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,052 DEBUG Processing 271/702 atomic regions from SNP 81015 to 81615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,118 DEBUG Processing 360/746 atomic regions from SNP 107748 to 108348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,218 DEBUG Processing 381/730 atomic regions from SNP 114240 to 114840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,297 DEBUG Processing 272/702 atomic regions from SNP 81315 to 81915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,304 DEBUG Processing 641/853 atomic regions from SNP 192270 to 192870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,362 DEBUG Processing 361/746 atomic regions from SNP 108048 to 108648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,458 DEBUG Processing 382/730 atomic regions from SNP 114540 to 115140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,542 DEBUG Processing 273/702 atomic regions from SNP 81615 to 82215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,576 DEBUG Processing 642/853 atomic regions from SNP 192570 to 193170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,610 DEBUG Processing 362/746 atomic regions from SNP 108348 to 108948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,677 DEBUG Processing 383/730 atomic regions from SNP 114840 to 115440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,784 DEBUG Processing 274/702 atomic regions from SNP 81915 to 82515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,855 DEBUG Processing 363/746 atomic regions from SNP 108648 to 109248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,856 DEBUG Processing 643/853 atomic regions from SNP 192870 to 193470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,929 DEBUG Processing 384/730 atomic regions from SNP 115140 to 115740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,049 DEBUG Processing 275/702 atomic regions from SNP 82215 to 82815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,099 DEBUG Processing 364/746 atomic regions from SNP 108948 to 109548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,133 DEBUG Processing 644/853 atomic regions from SNP 193170 to 193770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,186 DEBUG Processing 385/730 atomic regions from SNP 115440 to 116040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,299 DEBUG Processing 276/702 atomic regions from SNP 82515 to 83115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,343 DEBUG Processing 365/746 atomic regions from SNP 109248 to 109848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,403 DEBUG Processing 645/853 atomic regions from SNP 193470 to 194070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,433 DEBUG Processing 386/730 atomic regions from SNP 115740 to 116340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,533 DEBUG Processing 277/702 atomic regions from SNP 82815 to 83415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,582 DEBUG Processing 366/746 atomic regions from SNP 109548 to 110148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,649 DEBUG Processing 646/853 atomic regions from SNP 193770 to 194370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,649 DEBUG Processing 387/730 atomic regions from SNP 116040 to 116640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,770 DEBUG Processing 278/702 atomic regions from SNP 83115 to 83715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,817 DEBUG Processing 367/746 atomic regions from SNP 109848 to 110448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,864 DEBUG Processing 388/730 atomic regions from SNP 116340 to 116940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,881 DEBUG Processing 647/853 atomic regions from SNP 194070 to 194670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,012 DEBUG Processing 279/702 atomic regions from SNP 83415 to 84015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,058 DEBUG Processing 368/746 atomic regions from SNP 110148 to 110748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,097 DEBUG Processing 389/730 atomic regions from SNP 116640 to 117240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,120 DEBUG Processing 648/853 atomic regions from SNP 194370 to 194970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,243 DEBUG Processing 280/702 atomic regions from SNP 83715 to 84315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,296 DEBUG Processing 369/746 atomic regions from SNP 110448 to 111048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,327 DEBUG Processing 390/730 atomic regions from SNP 116940 to 117540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,352 DEBUG Processing 649/853 atomic regions from SNP 194670 to 195270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,473 DEBUG Processing 281/702 atomic regions from SNP 84015 to 84615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,533 DEBUG Processing 370/746 atomic regions from SNP 110748 to 111348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,566 DEBUG Processing 391/730 atomic regions from SNP 117240 to 117840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,588 DEBUG Processing 650/853 atomic regions from SNP 194970 to 195570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,709 DEBUG Processing 282/702 atomic regions from SNP 84315 to 84915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,771 DEBUG Processing 371/746 atomic regions from SNP 111048 to 111648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,778 DEBUG Processing 392/730 atomic regions from SNP 117540 to 118140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,827 DEBUG Processing 651/853 atomic regions from SNP 195270 to 195870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,949 DEBUG Processing 283/702 atomic regions from SNP 84615 to 85215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,992 DEBUG Processing 393/730 atomic regions from SNP 117840 to 118440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,013 DEBUG Processing 372/746 atomic regions from SNP 111348 to 111948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,065 DEBUG Processing 652/853 atomic regions from SNP 195570 to 196170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,185 DEBUG Processing 284/702 atomic regions from SNP 84915 to 85515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,204 DEBUG Processing 394/730 atomic regions from SNP 118140 to 118740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,256 DEBUG Processing 373/746 atomic regions from SNP 111648 to 112248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,296 DEBUG Processing 653/853 atomic regions from SNP 195870 to 196470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,412 DEBUG Processing 395/730 atomic regions from SNP 118440 to 119040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,415 DEBUG Processing 285/702 atomic regions from SNP 85215 to 85815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,486 DEBUG Processing 374/746 atomic regions from SNP 111948 to 112548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,521 DEBUG Processing 654/853 atomic regions from SNP 196170 to 196770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,621 DEBUG Processing 396/730 atomic regions from SNP 118740 to 119340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,641 DEBUG Processing 286/702 atomic regions from SNP 85515 to 86115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,714 DEBUG Processing 375/746 atomic regions from SNP 112248 to 112848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,746 DEBUG Processing 655/853 atomic regions from SNP 196470 to 197070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,842 DEBUG Processing 397/730 atomic regions from SNP 119040 to 119640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,870 DEBUG Processing 287/702 atomic regions from SNP 85815 to 86415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,934 DEBUG Processing 376/746 atomic regions from SNP 112548 to 113148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,980 DEBUG Processing 656/853 atomic regions from SNP 196770 to 197370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,062 DEBUG Processing 398/730 atomic regions from SNP 119340 to 119940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,118 DEBUG Processing 288/702 atomic regions from SNP 86115 to 86715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,161 DEBUG Processing 377/746 atomic regions from SNP 112848 to 113448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,235 DEBUG Processing 657/853 atomic regions from SNP 197070 to 197670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,281 DEBUG Processing 399/730 atomic regions from SNP 119640 to 120240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,358 DEBUG Processing 289/702 atomic regions from SNP 86415 to 87015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,395 DEBUG Processing 378/746 atomic regions from SNP 113148 to 113748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,499 DEBUG Processing 658/853 atomic regions from SNP 197370 to 197970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,502 DEBUG Processing 400/730 atomic regions from SNP 119940 to 120540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,583 DEBUG Processing 290/702 atomic regions from SNP 86715 to 87315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,624 DEBUG Processing 379/746 atomic regions from SNP 113448 to 114048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,723 DEBUG Processing 401/730 atomic regions from SNP 120240 to 120840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,767 DEBUG Processing 659/853 atomic regions from SNP 197670 to 198270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,808 DEBUG Processing 291/702 atomic regions from SNP 87015 to 87615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,852 DEBUG Processing 380/746 atomic regions from SNP 113748 to 114348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,937 DEBUG Processing 402/730 atomic regions from SNP 120540 to 121140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,006 DEBUG Processing 660/853 atomic regions from SNP 197970 to 198570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,032 DEBUG Processing 292/702 atomic regions from SNP 87315 to 87915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,076 DEBUG Processing 381/746 atomic regions from SNP 114048 to 114648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,141 DEBUG Processing 403/730 atomic regions from SNP 120840 to 121440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,260 DEBUG Processing 293/702 atomic regions from SNP 87615 to 88215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,262 DEBUG Processing 661/853 atomic regions from SNP 198270 to 198870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,308 DEBUG Processing 382/746 atomic regions from SNP 114348 to 114948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,377 DEBUG Processing 404/730 atomic regions from SNP 121140 to 121740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,486 DEBUG Processing 294/702 atomic regions from SNP 87915 to 88515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,497 DEBUG Processing 662/853 atomic regions from SNP 198570 to 199170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,543 DEBUG Processing 383/746 atomic regions from SNP 114648 to 115248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,599 DEBUG Processing 405/730 atomic regions from SNP 121440 to 122040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,708 DEBUG Processing 295/702 atomic regions from SNP 88215 to 88815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,735 DEBUG Processing 663/853 atomic regions from SNP 198870 to 199470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,776 DEBUG Processing 384/746 atomic regions from SNP 114948 to 115548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,811 DEBUG Processing 406/730 atomic regions from SNP 121740 to 122340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,935 DEBUG Processing 296/702 atomic regions from SNP 88515 to 89115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,970 DEBUG Processing 664/853 atomic regions from SNP 199170 to 199770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,015 DEBUG Processing 385/746 atomic regions from SNP 115248 to 115848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,027 DEBUG Processing 407/730 atomic regions from SNP 122040 to 122640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,173 DEBUG Processing 297/702 atomic regions from SNP 88815 to 89415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,210 DEBUG Processing 665/853 atomic regions from SNP 199470 to 200070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,246 DEBUG Processing 408/730 atomic regions from SNP 122340 to 122940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,252 DEBUG Processing 386/746 atomic regions from SNP 115548 to 116148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,400 DEBUG Processing 298/702 atomic regions from SNP 89115 to 89715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,445 DEBUG Processing 666/853 atomic regions from SNP 199770 to 200370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,465 DEBUG Processing 409/730 atomic regions from SNP 122640 to 123240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,484 DEBUG Processing 387/746 atomic regions from SNP 115848 to 116448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,620 DEBUG Processing 299/702 atomic regions from SNP 89415 to 90015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,681 DEBUG Processing 667/853 atomic regions from SNP 200070 to 200670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,684 DEBUG Processing 410/730 atomic regions from SNP 122940 to 123540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,716 DEBUG Processing 388/746 atomic regions from SNP 116148 to 116748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,842 DEBUG Processing 300/702 atomic regions from SNP 89715 to 90315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,900 DEBUG Processing 411/730 atomic regions from SNP 123240 to 123840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,918 DEBUG Processing 668/853 atomic regions from SNP 200370 to 200970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,946 DEBUG Processing 389/746 atomic regions from SNP 116448 to 117048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,072 DEBUG Processing 301/702 atomic regions from SNP 90015 to 90615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,122 DEBUG Processing 412/730 atomic regions from SNP 123540 to 124140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,171 DEBUG Processing 669/853 atomic regions from SNP 200670 to 201270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,197 DEBUG Processing 390/746 atomic regions from SNP 116748 to 117348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,300 DEBUG Processing 302/702 atomic regions from SNP 90315 to 90915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,344 DEBUG Processing 413/730 atomic regions from SNP 123840 to 124440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,445 DEBUG Processing 670/853 atomic regions from SNP 200970 to 201570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,447 DEBUG Processing 391/746 atomic regions from SNP 117048 to 117648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,529 DEBUG Processing 303/702 atomic regions from SNP 90615 to 91215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,561 DEBUG Processing 414/730 atomic regions from SNP 124140 to 124740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,680 DEBUG Processing 392/746 atomic regions from SNP 117348 to 117948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,694 DEBUG Processing 671/853 atomic regions from SNP 201270 to 201870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,765 DEBUG Processing 304/702 atomic regions from SNP 90915 to 91515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,784 DEBUG Processing 415/730 atomic regions from SNP 124440 to 125040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,905 DEBUG Processing 393/746 atomic regions from SNP 117648 to 118248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,939 DEBUG Processing 672/853 atomic regions from SNP 201570 to 202170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,001 DEBUG Processing 305/702 atomic regions from SNP 91215 to 91815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,011 DEBUG Processing 416/730 atomic regions from SNP 124740 to 125340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,143 DEBUG Processing 394/746 atomic regions from SNP 117948 to 118548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,181 DEBUG Processing 673/853 atomic regions from SNP 201870 to 202470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,239 DEBUG Processing 417/730 atomic regions from SNP 125040 to 125640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,258 DEBUG Processing 306/702 atomic regions from SNP 91515 to 92115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,382 DEBUG Processing 395/746 atomic regions from SNP 118248 to 118848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,427 DEBUG Processing 674/853 atomic regions from SNP 202170 to 202770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,462 DEBUG Processing 418/730 atomic regions from SNP 125340 to 125940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,491 DEBUG Processing 307/702 atomic regions from SNP 91815 to 92415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,631 DEBUG Processing 396/746 atomic regions from SNP 118548 to 119148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,677 DEBUG Processing 675/853 atomic regions from SNP 202470 to 203070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,690 DEBUG Processing 419/730 atomic regions from SNP 125640 to 126240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,741 DEBUG Processing 308/702 atomic regions from SNP 92115 to 92715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,879 DEBUG Processing 397/746 atomic regions from SNP 118848 to 119448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,924 DEBUG Processing 420/730 atomic regions from SNP 125940 to 126540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,935 DEBUG Processing 676/853 atomic regions from SNP 202770 to 203370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,002 DEBUG Processing 309/702 atomic regions from SNP 92415 to 93015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,129 DEBUG Processing 398/746 atomic regions from SNP 119148 to 119748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,155 DEBUG Processing 421/730 atomic regions from SNP 126240 to 126840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,187 DEBUG Processing 677/853 atomic regions from SNP 203070 to 203670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,251 DEBUG Processing 310/702 atomic regions from SNP 92715 to 93315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,388 DEBUG Processing 399/746 atomic regions from SNP 119448 to 120048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,397 DEBUG Processing 422/730 atomic regions from SNP 126540 to 127140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,445 DEBUG Processing 678/853 atomic regions from SNP 203370 to 203970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,499 DEBUG Processing 311/702 atomic regions from SNP 93015 to 93615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,634 DEBUG Processing 423/730 atomic regions from SNP 126840 to 127440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,637 DEBUG Processing 400/746 atomic regions from SNP 119748 to 120348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,716 DEBUG Processing 679/853 atomic regions from SNP 203670 to 204270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,751 DEBUG Processing 312/702 atomic regions from SNP 93315 to 93915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,863 DEBUG Processing 424/730 atomic regions from SNP 127140 to 127740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,882 DEBUG Processing 401/746 atomic regions from SNP 120048 to 120648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,992 DEBUG Processing 680/853 atomic regions from SNP 203970 to 204570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,012 DEBUG Processing 313/702 atomic regions from SNP 93615 to 94215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,089 DEBUG Processing 425/730 atomic regions from SNP 127440 to 128040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,129 DEBUG Processing 402/746 atomic regions from SNP 120348 to 120948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,238 DEBUG Processing 681/853 atomic regions from SNP 204270 to 204870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,281 DEBUG Processing 314/702 atomic regions from SNP 93915 to 94515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,317 DEBUG Processing 426/730 atomic regions from SNP 127740 to 128340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,372 DEBUG Processing 403/746 atomic regions from SNP 120648 to 121248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,507 DEBUG Processing 682/853 atomic regions from SNP 204570 to 205170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,560 DEBUG Processing 427/730 atomic regions from SNP 128040 to 128640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,572 DEBUG Processing 315/702 atomic regions from SNP 94215 to 94815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,624 DEBUG Processing 404/746 atomic regions from SNP 120948 to 121548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,767 DEBUG Processing 683/853 atomic regions from SNP 204870 to 205470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,793 DEBUG Processing 428/730 atomic regions from SNP 128340 to 128940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,839 DEBUG Processing 316/702 atomic regions from SNP 94515 to 95115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,869 DEBUG Processing 405/746 atomic regions from SNP 121248 to 121848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,931 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:49:56,932 DEBUG chr14: Signal quantile: 0.994. signal threshold: 11. Best RMSEA: 0.016 2025-01-31 09:49:57,021 DEBUG Processing 429/730 atomic regions from SNP 128640 to 129240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,041 DEBUG Processing 684/853 atomic regions from SNP 205170 to 205770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,084 DEBUG Processing 317/702 atomic regions from SNP 94815 to 95415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,107 DEBUG Processing 406/746 atomic regions from SNP 121548 to 122148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,249 DEBUG Processing 430/730 atomic regions from SNP 128940 to 129540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,314 DEBUG Processing 685/853 atomic regions from SNP 205470 to 206070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,332 DEBUG Processing 318/702 atomic regions from SNP 95115 to 95715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,350 DEBUG Processing 407/746 atomic regions from SNP 121848 to 122448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,477 DEBUG Processing 431/730 atomic regions from SNP 129240 to 129840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,589 DEBUG Processing 319/702 atomic regions from SNP 95415 to 96015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,592 DEBUG Processing 408/746 atomic regions from SNP 122148 to 122748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,593 DEBUG Processing 686/853 atomic regions from SNP 205770 to 206370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,706 DEBUG Processing 432/730 atomic regions from SNP 129540 to 130140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,837 DEBUG Processing 409/746 atomic regions from SNP 122448 to 123048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,865 DEBUG Processing 320/702 atomic regions from SNP 95715 to 96315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,879 DEBUG Processing 687/853 atomic regions from SNP 206070 to 206670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,941 DEBUG Processing 433/730 atomic regions from SNP 129840 to 130440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,093 DEBUG Processing 410/746 atomic regions from SNP 122748 to 123348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,116 DEBUG Processing 321/702 atomic regions from SNP 96015 to 96615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,141 DEBUG Processing 688/853 atomic regions from SNP 206370 to 206970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,170 DEBUG Processing 434/730 atomic regions from SNP 130140 to 130740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,332 DEBUG Processing 411/746 atomic regions from SNP 123048 to 123648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,351 DEBUG Processing 322/702 atomic regions from SNP 96315 to 96915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,399 DEBUG Processing 435/730 atomic regions from SNP 130440 to 131040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,416 DEBUG Processing 689/853 atomic regions from SNP 206670 to 207270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,580 DEBUG Processing 412/746 atomic regions from SNP 123348 to 123948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,594 DEBUG Processing 323/702 atomic regions from SNP 96615 to 97215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,638 DEBUG Processing 436/730 atomic regions from SNP 130740 to 131340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,703 DEBUG Processing 690/853 atomic regions from SNP 206970 to 207570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,816 DEBUG Processing 413/746 atomic regions from SNP 123648 to 124248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,828 DEBUG Processing 324/702 atomic regions from SNP 96915 to 97515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,867 DEBUG Processing 437/730 atomic regions from SNP 131040 to 131640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,967 DEBUG Processing 691/853 atomic regions from SNP 207270 to 207870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,056 DEBUG Processing 414/746 atomic regions from SNP 123948 to 124548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,065 DEBUG Processing 325/702 atomic regions from SNP 97215 to 97815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,106 DEBUG Processing 438/730 atomic regions from SNP 131340 to 131940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,212 DEBUG Processing 692/853 atomic regions from SNP 207570 to 208170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,307 DEBUG Processing 415/746 atomic regions from SNP 124248 to 124848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,311 DEBUG Processing 326/702 atomic regions from SNP 97515 to 98115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,350 DEBUG chr14 total SNP count: 199731 2025-01-31 09:49:59,350 DEBUG chr14 length: 124902244 2025-01-31 09:49:59,350 DEBUG ----------------------------------------- 2025-01-31 09:49:59,350 INFO Processing SNPs in chr14 2025-01-31 09:49:59,361 DEBUG Processing 439/730 atomic regions from SNP 131640 to 132240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,458 DEBUG Processing 693/853 atomic regions from SNP 207870 to 208470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,550 DEBUG Processing 416/746 atomic regions from SNP 124548 to 125148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,553 DEBUG Processing 327/702 atomic regions from SNP 97815 to 98415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,590 DEBUG Processing 440/730 atomic regions from SNP 131940 to 132540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,661 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 161), (161, 199731)] 2025-01-31 09:49:59,705 DEBUG Processing 694/853 atomic regions from SNP 208170 to 208770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,746 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:59,767 DEBUG Segmenting atomic regions: 2025-01-31 09:49:59,785 DEBUG Processing 328/702 atomic regions from SNP 98115 to 98715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,787 DEBUG Processing 417/746 atomic regions from SNP 124848 to 125448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,812 DEBUG Processing 441/730 atomic regions from SNP 132240 to 132840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,854 DEBUG Processing 1/1 atomic regions from SNP 0 to 160 for chr14 (subchromosome 1 of 2). 2025-01-31 09:49:59,863 DEBUG Unique SNPs positions in subchromosome 1: 161 2025-01-31 09:49:59,864 DEBUG Subchromosome time: 0.11785010399762541, subchromosome SNPs: 161 2025-01-31 09:49:59,916 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:59,955 DEBUG Processing 695/853 atomic regions from SNP 208470 to 209070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,022 DEBUG Processing 329/702 atomic regions from SNP 98415 to 99015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,025 DEBUG Processing 418/746 atomic regions from SNP 125148 to 125748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,035 DEBUG Processing 442/730 atomic regions from SNP 132540 to 133140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,205 DEBUG Processing 696/853 atomic regions from SNP 208770 to 209370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,260 DEBUG Processing 330/702 atomic regions from SNP 98715 to 99315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,260 DEBUG Processing 443/730 atomic regions from SNP 132840 to 133440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,271 DEBUG Processing 419/746 atomic regions from SNP 125448 to 126048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,457 DEBUG Processing 697/853 atomic regions from SNP 209070 to 209670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,487 DEBUG Processing 444/730 atomic regions from SNP 133140 to 133740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,500 DEBUG Processing 331/702 atomic regions from SNP 99015 to 99615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,516 DEBUG Processing 420/746 atomic regions from SNP 125748 to 126348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,712 DEBUG Processing 445/730 atomic regions from SNP 133440 to 134040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,716 DEBUG Processing 698/853 atomic regions from SNP 209370 to 209970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,733 DEBUG Processing 332/702 atomic regions from SNP 99315 to 99915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,752 DEBUG Processing 421/746 atomic regions from SNP 126048 to 126648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,926 DEBUG Processing 446/730 atomic regions from SNP 133740 to 134340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,958 DEBUG Processing 333/702 atomic regions from SNP 99615 to 100215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,972 DEBUG Processing 699/853 atomic regions from SNP 209670 to 210270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,983 DEBUG Processing 422/746 atomic regions from SNP 126348 to 126948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,132 DEBUG Processing 447/730 atomic regions from SNP 134040 to 134640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,178 DEBUG Processing 334/702 atomic regions from SNP 99915 to 100515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,224 DEBUG Processing 423/746 atomic regions from SNP 126648 to 127248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,238 DEBUG Processing 700/853 atomic regions from SNP 209970 to 210570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,348 DEBUG Processing 448/730 atomic regions from SNP 134340 to 134940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,408 DEBUG Processing 335/702 atomic regions from SNP 100215 to 100815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,483 DEBUG Processing 701/853 atomic regions from SNP 210270 to 210870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,484 DEBUG Processing 424/746 atomic regions from SNP 126948 to 127548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,563 DEBUG Processing 449/730 atomic regions from SNP 134640 to 135240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,634 DEBUG Processing 336/702 atomic regions from SNP 100515 to 101115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,727 DEBUG Processing 702/853 atomic regions from SNP 210570 to 211170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,741 DEBUG Processing 425/746 atomic regions from SNP 127248 to 127848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,781 DEBUG Processing 450/730 atomic regions from SNP 134940 to 135540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,888 DEBUG Processing 337/702 atomic regions from SNP 100815 to 101415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,968 DEBUG Processing 703/853 atomic regions from SNP 210870 to 211470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,976 DEBUG Processing 426/746 atomic regions from SNP 127548 to 128148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,006 DEBUG Processing 451/730 atomic regions from SNP 135240 to 135840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,135 DEBUG Processing 338/702 atomic regions from SNP 101115 to 101715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,211 DEBUG Processing 704/853 atomic regions from SNP 211170 to 211770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,221 DEBUG Processing 427/746 atomic regions from SNP 127848 to 128448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,232 DEBUG Processing 452/730 atomic regions from SNP 135540 to 136140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,357 DEBUG Processing 339/702 atomic regions from SNP 101415 to 102015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,450 DEBUG Processing 705/853 atomic regions from SNP 211470 to 212070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,453 DEBUG Processing 453/730 atomic regions from SNP 135840 to 136440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,460 DEBUG Processing 428/746 atomic regions from SNP 128148 to 128748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,574 DEBUG Processing 340/702 atomic regions from SNP 101715 to 102315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,678 DEBUG Processing 429/746 atomic regions from SNP 128448 to 129048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,682 DEBUG Processing 454/730 atomic regions from SNP 136140 to 136740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,687 DEBUG Processing 706/853 atomic regions from SNP 211770 to 212370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,789 DEBUG Processing 341/702 atomic regions from SNP 102015 to 102615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,889 DEBUG Processing 430/746 atomic regions from SNP 128748 to 129348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,922 DEBUG Processing 455/730 atomic regions from SNP 136440 to 137040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,944 DEBUG Processing 707/853 atomic regions from SNP 212070 to 212670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,015 DEBUG Processing 342/702 atomic regions from SNP 102315 to 102915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,099 DEBUG Processing 431/746 atomic regions from SNP 129048 to 129648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,159 DEBUG Processing 456/730 atomic regions from SNP 136740 to 137340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,201 DEBUG Processing 708/853 atomic regions from SNP 212370 to 212970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,227 DEBUG Processing 343/702 atomic regions from SNP 102615 to 103215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,328 DEBUG Processing 432/746 atomic regions from SNP 129348 to 129948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,417 DEBUG Processing 457/730 atomic regions from SNP 137040 to 137640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,442 DEBUG Processing 344/702 atomic regions from SNP 102915 to 103515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,474 DEBUG Processing 709/853 atomic regions from SNP 212670 to 213270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,559 DEBUG Processing 433/746 atomic regions from SNP 129648 to 130248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,654 DEBUG Processing 345/702 atomic regions from SNP 103215 to 103815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,668 DEBUG Processing 458/730 atomic regions from SNP 137340 to 137940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,749 DEBUG Processing 710/853 atomic regions from SNP 212970 to 213570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,772 DEBUG Processing 434/746 atomic regions from SNP 129948 to 130548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,865 DEBUG Processing 346/702 atomic regions from SNP 103515 to 104115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,905 DEBUG Processing 459/730 atomic regions from SNP 137640 to 138240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,009 DEBUG Processing 435/746 atomic regions from SNP 130248 to 130848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,028 DEBUG Processing 711/853 atomic regions from SNP 213270 to 213870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,076 DEBUG Processing 347/702 atomic regions from SNP 103815 to 104415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,123 DEBUG Processing 460/730 atomic regions from SNP 137940 to 138540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,234 DEBUG Processing 436/746 atomic regions from SNP 130548 to 131148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,286 DEBUG Processing 348/702 atomic regions from SNP 104115 to 104715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,298 DEBUG Processing 712/853 atomic regions from SNP 213570 to 214170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,370 DEBUG Processing 461/730 atomic regions from SNP 138240 to 138840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,474 DEBUG Processing 437/746 atomic regions from SNP 130848 to 131448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,503 DEBUG Processing 349/702 atomic regions from SNP 104415 to 105015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,554 DEBUG Processing 713/853 atomic regions from SNP 213870 to 214470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,621 DEBUG Processing 462/730 atomic regions from SNP 138540 to 139140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,720 DEBUG Processing 438/746 atomic regions from SNP 131148 to 131748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,725 DEBUG Processing 350/702 atomic regions from SNP 104715 to 105315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,803 DEBUG Processing 714/853 atomic regions from SNP 214170 to 214770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,869 DEBUG Processing 463/730 atomic regions from SNP 138840 to 139440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,945 DEBUG Processing 351/702 atomic regions from SNP 105015 to 105615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,960 DEBUG Processing 439/746 atomic regions from SNP 131448 to 132048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,034 DEBUG Processing 715/853 atomic regions from SNP 214470 to 215070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,118 DEBUG Processing 464/730 atomic regions from SNP 139140 to 139740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,162 DEBUG Processing 352/702 atomic regions from SNP 105315 to 105915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,198 DEBUG Processing 440/746 atomic regions from SNP 131748 to 132348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,267 DEBUG Processing 716/853 atomic regions from SNP 214770 to 215370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,338 DEBUG Processing 465/730 atomic regions from SNP 139440 to 140040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,378 DEBUG Processing 353/702 atomic regions from SNP 105615 to 106215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,426 DEBUG Processing 441/746 atomic regions from SNP 132048 to 132648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,499 DEBUG Processing 717/853 atomic regions from SNP 215070 to 215670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,568 DEBUG Processing 466/730 atomic regions from SNP 139740 to 140340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,596 DEBUG Processing 354/702 atomic regions from SNP 105915 to 106515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,643 DEBUG Processing 442/746 atomic regions from SNP 132348 to 132948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,735 DEBUG Processing 718/853 atomic regions from SNP 215370 to 215970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,789 DEBUG Processing 467/730 atomic regions from SNP 140040 to 140640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,812 DEBUG Processing 355/702 atomic regions from SNP 106215 to 106815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,859 DEBUG Processing 443/746 atomic regions from SNP 132648 to 133248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,975 DEBUG Processing 719/853 atomic regions from SNP 215670 to 216270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,010 DEBUG Processing 468/730 atomic regions from SNP 140340 to 140940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,027 DEBUG Processing 356/702 atomic regions from SNP 106515 to 107115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,074 DEBUG Processing 444/746 atomic regions from SNP 132948 to 133548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,212 DEBUG Processing 720/853 atomic regions from SNP 215970 to 216570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,228 DEBUG Processing 469/730 atomic regions from SNP 140640 to 141240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,246 DEBUG Processing 357/702 atomic regions from SNP 106815 to 107415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,297 DEBUG Processing 445/746 atomic regions from SNP 133248 to 133848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,446 DEBUG Processing 470/730 atomic regions from SNP 140940 to 141540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,449 DEBUG Processing 721/853 atomic regions from SNP 216270 to 216870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,467 DEBUG Processing 358/702 atomic regions from SNP 107115 to 107715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,527 DEBUG Processing 446/746 atomic regions from SNP 133548 to 134148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,669 DEBUG Processing 471/730 atomic regions from SNP 141240 to 141840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,689 DEBUG Processing 359/702 atomic regions from SNP 107415 to 108015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,693 DEBUG Processing 722/853 atomic regions from SNP 216570 to 217170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,783 DEBUG Processing 447/746 atomic regions from SNP 133848 to 134448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,887 DEBUG Processing 472/730 atomic regions from SNP 141540 to 142140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,907 DEBUG Processing 360/702 atomic regions from SNP 107715 to 108315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,933 DEBUG Processing 723/853 atomic regions from SNP 216870 to 217470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,039 DEBUG Processing 448/746 atomic regions from SNP 134148 to 134748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,106 DEBUG Processing 473/730 atomic regions from SNP 141840 to 142440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,127 DEBUG Processing 361/702 atomic regions from SNP 108015 to 108615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,174 DEBUG Processing 724/853 atomic regions from SNP 217170 to 217770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,299 DEBUG Processing 449/746 atomic regions from SNP 134448 to 135048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,326 DEBUG Processing 474/730 atomic regions from SNP 142140 to 142740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,351 DEBUG Processing 362/702 atomic regions from SNP 108315 to 108915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,419 DEBUG Processing 725/853 atomic regions from SNP 217470 to 218070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,543 DEBUG Processing 475/730 atomic regions from SNP 142440 to 143040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,558 DEBUG Processing 450/746 atomic regions from SNP 134748 to 135348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,579 DEBUG Processing 363/702 atomic regions from SNP 108615 to 109215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,673 DEBUG Processing 726/853 atomic regions from SNP 217770 to 218370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,763 DEBUG Processing 476/730 atomic regions from SNP 142740 to 143340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,808 DEBUG Processing 364/702 atomic regions from SNP 108915 to 109515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,826 DEBUG Processing 451/746 atomic regions from SNP 135048 to 135648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,930 DEBUG Processing 727/853 atomic regions from SNP 218070 to 218670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,992 DEBUG Processing 477/730 atomic regions from SNP 143040 to 143640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,052 DEBUG Processing 365/702 atomic regions from SNP 109215 to 109815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,106 DEBUG Processing 452/746 atomic regions from SNP 135348 to 135948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,171 DEBUG Processing 728/853 atomic regions from SNP 218370 to 218970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,217 DEBUG Processing 478/730 atomic regions from SNP 143340 to 143940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,277 DEBUG Processing 366/702 atomic regions from SNP 109515 to 110115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,365 DEBUG Processing 453/746 atomic regions from SNP 135648 to 136248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,415 DEBUG Processing 729/853 atomic regions from SNP 218670 to 219270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,441 DEBUG Processing 479/730 atomic regions from SNP 143640 to 144240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,503 DEBUG Processing 367/702 atomic regions from SNP 109815 to 110415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,625 DEBUG Processing 454/746 atomic regions from SNP 135948 to 136548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,668 DEBUG Processing 730/853 atomic regions from SNP 218970 to 219570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,675 DEBUG Processing 480/730 atomic regions from SNP 143940 to 144540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,730 DEBUG Processing 368/702 atomic regions from SNP 110115 to 110715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,889 DEBUG Processing 455/746 atomic regions from SNP 136248 to 136848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,902 DEBUG Processing 481/730 atomic regions from SNP 144240 to 144840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,926 DEBUG Processing 731/853 atomic regions from SNP 219270 to 219870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,961 DEBUG Processing 369/702 atomic regions from SNP 110415 to 111015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,125 DEBUG Processing 482/730 atomic regions from SNP 144540 to 145140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,155 DEBUG Processing 456/746 atomic regions from SNP 136548 to 137148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,187 DEBUG Processing 370/702 atomic regions from SNP 110715 to 111315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,203 DEBUG Processing 732/853 atomic regions from SNP 219570 to 220170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,363 DEBUG Processing 483/730 atomic regions from SNP 144840 to 145440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,404 DEBUG Processing 371/702 atomic regions from SNP 111015 to 111615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,412 DEBUG Processing 457/746 atomic regions from SNP 136848 to 137448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,447 DEBUG Processing 733/853 atomic regions from SNP 219870 to 220470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,595 DEBUG Processing 484/730 atomic regions from SNP 145140 to 145740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,645 DEBUG Processing 372/702 atomic regions from SNP 111315 to 111915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,673 DEBUG Processing 458/746 atomic regions from SNP 137148 to 137748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,703 DEBUG Processing 734/853 atomic regions from SNP 220170 to 220770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,810 DEBUG Processing 485/730 atomic regions from SNP 145440 to 146040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,878 DEBUG Processing 373/702 atomic regions from SNP 111615 to 112215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,931 DEBUG Processing 459/746 atomic regions from SNP 137448 to 138048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,954 DEBUG Processing 735/853 atomic regions from SNP 220470 to 221070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,026 DEBUG Processing 486/730 atomic regions from SNP 145740 to 146340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,094 DEBUG Processing 374/702 atomic regions from SNP 111915 to 112515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,169 DEBUG Processing 460/746 atomic regions from SNP 137748 to 138348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,191 DEBUG Processing 736/853 atomic regions from SNP 220770 to 221370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,247 DEBUG Processing 487/730 atomic regions from SNP 146040 to 146640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,324 DEBUG Processing 375/702 atomic regions from SNP 112215 to 112815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,402 DEBUG Processing 461/746 atomic regions from SNP 138048 to 138648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,436 DEBUG Processing 737/853 atomic regions from SNP 221070 to 221670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,474 DEBUG Processing 488/730 atomic regions from SNP 146340 to 146940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,533 DEBUG Processing 376/702 atomic regions from SNP 112515 to 113115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,616 DEBUG Processing 462/746 atomic regions from SNP 138348 to 138948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,670 DEBUG Processing 738/853 atomic regions from SNP 221370 to 221970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,694 DEBUG Processing 489/730 atomic regions from SNP 146640 to 147240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,743 DEBUG Processing 377/702 atomic regions from SNP 112815 to 113415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,831 DEBUG Processing 463/746 atomic regions from SNP 138648 to 139248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,904 DEBUG Processing 739/853 atomic regions from SNP 221670 to 222270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,913 DEBUG Processing 490/730 atomic regions from SNP 146940 to 147540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,950 DEBUG Processing 378/702 atomic regions from SNP 113115 to 113715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,065 DEBUG Processing 464/746 atomic regions from SNP 138948 to 139548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,149 DEBUG Processing 491/730 atomic regions from SNP 147240 to 147840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,158 DEBUG Processing 740/853 atomic regions from SNP 221970 to 222570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,184 DEBUG Processing 379/702 atomic regions from SNP 113415 to 114015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,307 DEBUG Processing 465/746 atomic regions from SNP 139248 to 139848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,377 DEBUG Processing 492/730 atomic regions from SNP 147540 to 148140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,394 DEBUG Processing 741/853 atomic regions from SNP 222270 to 222870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,398 DEBUG Processing 380/702 atomic regions from SNP 113715 to 114315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,517 DEBUG Processing 466/746 atomic regions from SNP 139548 to 140148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,597 DEBUG Processing 493/730 atomic regions from SNP 147840 to 148440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,610 DEBUG Processing 381/702 atomic regions from SNP 114015 to 114615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,632 DEBUG Processing 742/853 atomic regions from SNP 222570 to 223170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,732 DEBUG Processing 467/746 atomic regions from SNP 139848 to 140448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,817 DEBUG Processing 494/730 atomic regions from SNP 148140 to 148740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,836 DEBUG Processing 382/702 atomic regions from SNP 114315 to 114915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,874 DEBUG Processing 743/853 atomic regions from SNP 222870 to 223470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,952 DEBUG Processing 468/746 atomic regions from SNP 140148 to 140748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,035 DEBUG Processing 495/730 atomic regions from SNP 148440 to 149040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,053 DEBUG Processing 383/702 atomic regions from SNP 114615 to 115215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,116 DEBUG Processing 744/853 atomic regions from SNP 223170 to 223770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,180 DEBUG Processing 469/746 atomic regions from SNP 140448 to 141048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,259 DEBUG Processing 496/730 atomic regions from SNP 148740 to 149340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,282 DEBUG Processing 384/702 atomic regions from SNP 114915 to 115515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,368 DEBUG Processing 745/853 atomic regions from SNP 223470 to 224070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,394 DEBUG Processing 470/746 atomic regions from SNP 140748 to 141348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,477 DEBUG Processing 497/730 atomic regions from SNP 149040 to 149640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,497 DEBUG Processing 385/702 atomic regions from SNP 115215 to 115815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,607 DEBUG Processing 746/853 atomic regions from SNP 223770 to 224370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,607 DEBUG Processing 471/746 atomic regions from SNP 141048 to 141648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,699 DEBUG Processing 498/730 atomic regions from SNP 149340 to 149940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,714 DEBUG Processing 386/702 atomic regions from SNP 115515 to 116115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,821 DEBUG Processing 472/746 atomic regions from SNP 141348 to 141948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,852 DEBUG Processing 747/853 atomic regions from SNP 224070 to 224670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,923 DEBUG Processing 499/730 atomic regions from SNP 149640 to 150240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,926 DEBUG Processing 387/702 atomic regions from SNP 115815 to 116415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,033 DEBUG Processing 473/746 atomic regions from SNP 141648 to 142248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,094 DEBUG Processing 748/853 atomic regions from SNP 224370 to 224970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,141 DEBUG Processing 388/702 atomic regions from SNP 116115 to 116715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,149 DEBUG Processing 500/730 atomic regions from SNP 149940 to 150540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,243 DEBUG Processing 474/746 atomic regions from SNP 141948 to 142548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,338 DEBUG Processing 749/853 atomic regions from SNP 224670 to 225270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,357 DEBUG Processing 389/702 atomic regions from SNP 116415 to 117015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,368 DEBUG Processing 501/730 atomic regions from SNP 150240 to 150840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,466 DEBUG Processing 475/746 atomic regions from SNP 142248 to 142848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,566 DEBUG Processing 390/702 atomic regions from SNP 116715 to 117315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,584 DEBUG Processing 750/853 atomic regions from SNP 224970 to 225570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,592 DEBUG Processing 502/730 atomic regions from SNP 150540 to 151140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,677 DEBUG Processing 476/746 atomic regions from SNP 142548 to 143148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,773 DEBUG Processing 391/702 atomic regions from SNP 117015 to 117615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,806 DEBUG Processing 503/730 atomic regions from SNP 150840 to 151440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,820 DEBUG Processing 751/853 atomic regions from SNP 225270 to 225870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,905 DEBUG Processing 477/746 atomic regions from SNP 142848 to 143448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,988 DEBUG Processing 392/702 atomic regions from SNP 117315 to 117915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,028 DEBUG Processing 504/730 atomic regions from SNP 151140 to 151740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,068 DEBUG Processing 752/853 atomic regions from SNP 225570 to 226170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,132 DEBUG Processing 478/746 atomic regions from SNP 143148 to 143748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,211 DEBUG Processing 393/702 atomic regions from SNP 117615 to 118215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,257 DEBUG Processing 505/730 atomic regions from SNP 151440 to 152040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,318 DEBUG Processing 753/853 atomic regions from SNP 225870 to 226470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,353 DEBUG Processing 479/746 atomic regions from SNP 143448 to 144048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,429 DEBUG Processing 394/702 atomic regions from SNP 117915 to 118515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,475 DEBUG Processing 506/730 atomic regions from SNP 151740 to 152340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,558 DEBUG Processing 754/853 atomic regions from SNP 226170 to 226770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,566 DEBUG Processing 480/746 atomic regions from SNP 143748 to 144348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,648 DEBUG Processing 395/702 atomic regions from SNP 118215 to 118815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,685 DEBUG Processing 507/730 atomic regions from SNP 152040 to 152640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,785 DEBUG Processing 481/746 atomic regions from SNP 144048 to 144648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,799 DEBUG Processing 755/853 atomic regions from SNP 226470 to 227070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,871 DEBUG Processing 396/702 atomic regions from SNP 118515 to 119115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,903 DEBUG Processing 508/730 atomic regions from SNP 152340 to 152940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,004 DEBUG Processing 482/746 atomic regions from SNP 144348 to 144948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,042 DEBUG Processing 756/853 atomic regions from SNP 226770 to 227370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,095 DEBUG Processing 397/702 atomic regions from SNP 118815 to 119415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,123 DEBUG Processing 509/730 atomic regions from SNP 152640 to 153240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,220 DEBUG Processing 483/746 atomic regions from SNP 144648 to 145248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,283 DEBUG Processing 757/853 atomic regions from SNP 227070 to 227670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,318 DEBUG Processing 398/702 atomic regions from SNP 119115 to 119715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,345 DEBUG Processing 510/730 atomic regions from SNP 152940 to 153540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,440 DEBUG Processing 484/746 atomic regions from SNP 144948 to 145548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,524 DEBUG Processing 758/853 atomic regions from SNP 227370 to 227970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,539 DEBUG Processing 399/702 atomic regions from SNP 119415 to 120015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,568 DEBUG Processing 511/730 atomic regions from SNP 153240 to 153840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,658 DEBUG Processing 485/746 atomic regions from SNP 145248 to 145848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,759 DEBUG Processing 400/702 atomic regions from SNP 119715 to 120315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,768 DEBUG Processing 759/853 atomic regions from SNP 227670 to 228270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,791 DEBUG Processing 512/730 atomic regions from SNP 153540 to 154140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,875 DEBUG Processing 486/746 atomic regions from SNP 145548 to 146148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,970 DEBUG Processing 401/702 atomic regions from SNP 120015 to 120615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,004 DEBUG Processing 760/853 atomic regions from SNP 227970 to 228570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,008 DEBUG Processing 513/730 atomic regions from SNP 153840 to 154440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,093 DEBUG Processing 487/746 atomic regions from SNP 145848 to 146448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,187 DEBUG Processing 402/702 atomic regions from SNP 120315 to 120915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,230 DEBUG Processing 514/730 atomic regions from SNP 154140 to 154740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,247 DEBUG Processing 761/853 atomic regions from SNP 228270 to 228870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,318 DEBUG Processing 488/746 atomic regions from SNP 146148 to 146748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,404 DEBUG Processing 403/702 atomic regions from SNP 120615 to 121215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,449 DEBUG Processing 515/730 atomic regions from SNP 154440 to 155040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,488 DEBUG Processing 762/853 atomic regions from SNP 228570 to 229170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,538 DEBUG Processing 489/746 atomic regions from SNP 146448 to 147048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,627 DEBUG Processing 404/702 atomic regions from SNP 120915 to 121515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,672 DEBUG Processing 516/730 atomic regions from SNP 154740 to 155340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,749 DEBUG Processing 763/853 atomic regions from SNP 228870 to 229470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,779 DEBUG Processing 490/746 atomic regions from SNP 146748 to 147348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,842 DEBUG Processing 405/702 atomic regions from SNP 121215 to 121815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,884 DEBUG Processing 517/730 atomic regions from SNP 155040 to 155640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,990 DEBUG Processing 764/853 atomic regions from SNP 229170 to 229770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,998 DEBUG Processing 491/746 atomic regions from SNP 147048 to 147648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,057 DEBUG Processing 406/702 atomic regions from SNP 121515 to 122115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,100 DEBUG Processing 518/730 atomic regions from SNP 155340 to 155940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,216 DEBUG Processing 492/746 atomic regions from SNP 147348 to 147948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,240 DEBUG Processing 765/853 atomic regions from SNP 229470 to 230070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,276 DEBUG Processing 407/702 atomic regions from SNP 121815 to 122415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,326 DEBUG Processing 519/730 atomic regions from SNP 155640 to 156240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,443 DEBUG Processing 493/746 atomic regions from SNP 147648 to 148248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,495 DEBUG Processing 408/702 atomic regions from SNP 122115 to 122715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,517 DEBUG Processing 766/853 atomic regions from SNP 229770 to 230370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,578 DEBUG Processing 520/730 atomic regions from SNP 155940 to 156540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,668 DEBUG Processing 494/746 atomic regions from SNP 147948 to 148548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,712 DEBUG Processing 409/702 atomic regions from SNP 122415 to 123015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,775 DEBUG Processing 767/853 atomic regions from SNP 230070 to 230670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,801 DEBUG Processing 521/730 atomic regions from SNP 156240 to 156840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,887 DEBUG Processing 495/746 atomic regions from SNP 148248 to 148848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,927 DEBUG Processing 410/702 atomic regions from SNP 122715 to 123315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,027 DEBUG Processing 522/730 atomic regions from SNP 156540 to 157140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,036 DEBUG Processing 768/853 atomic regions from SNP 230370 to 230970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,102 DEBUG Processing 496/746 atomic regions from SNP 148548 to 149148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,143 DEBUG Processing 411/702 atomic regions from SNP 123015 to 123615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,261 DEBUG Processing 523/730 atomic regions from SNP 156840 to 157440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,281 DEBUG Processing 769/853 atomic regions from SNP 230670 to 231270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,318 DEBUG Processing 497/746 atomic regions from SNP 148848 to 149448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,357 DEBUG Processing 412/702 atomic regions from SNP 123315 to 123915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,509 DEBUG Processing 524/730 atomic regions from SNP 157140 to 157740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,522 DEBUG Processing 770/853 atomic regions from SNP 230970 to 231570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,538 DEBUG Processing 498/746 atomic regions from SNP 149148 to 149748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,579 DEBUG Processing 413/702 atomic regions from SNP 123615 to 124215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,758 DEBUG Processing 499/746 atomic regions from SNP 149448 to 150048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,769 DEBUG Processing 525/730 atomic regions from SNP 157440 to 158040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,779 DEBUG Processing 771/853 atomic regions from SNP 231270 to 231870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,819 DEBUG Processing 414/702 atomic regions from SNP 123915 to 124515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,977 DEBUG Processing 500/746 atomic regions from SNP 149748 to 150348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,003 DEBUG Processing 526/730 atomic regions from SNP 157740 to 158340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,020 DEBUG Processing 772/853 atomic regions from SNP 231570 to 232170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,042 DEBUG Processing 415/702 atomic regions from SNP 124215 to 124815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,193 DEBUG Processing 501/746 atomic regions from SNP 150048 to 150648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,244 DEBUG Processing 527/730 atomic regions from SNP 158040 to 158640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,264 DEBUG Processing 416/702 atomic regions from SNP 124515 to 125115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,268 DEBUG Processing 773/853 atomic regions from SNP 231870 to 232470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,409 DEBUG Processing 502/746 atomic regions from SNP 150348 to 150948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,481 DEBUG Processing 528/730 atomic regions from SNP 158340 to 158940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,483 DEBUG Processing 417/702 atomic regions from SNP 124815 to 125415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,514 DEBUG Processing 774/853 atomic regions from SNP 232170 to 232770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,621 DEBUG Processing 503/746 atomic regions from SNP 150648 to 151248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,694 DEBUG Processing 418/702 atomic regions from SNP 125115 to 125715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,712 DEBUG Processing 529/730 atomic regions from SNP 158640 to 159240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,757 DEBUG Processing 775/853 atomic regions from SNP 232470 to 233070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,844 DEBUG Processing 504/746 atomic regions from SNP 150948 to 151548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,929 DEBUG Processing 419/702 atomic regions from SNP 125415 to 126015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,949 DEBUG Processing 530/730 atomic regions from SNP 158940 to 159540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,007 DEBUG Processing 776/853 atomic regions from SNP 232770 to 233370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,054 DEBUG Processing 505/746 atomic regions from SNP 151248 to 151848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,153 DEBUG Processing 420/702 atomic regions from SNP 125715 to 126315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,171 DEBUG Processing 531/730 atomic regions from SNP 159240 to 159840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,252 DEBUG Processing 777/853 atomic regions from SNP 233070 to 233670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,266 DEBUG Processing 506/746 atomic regions from SNP 151548 to 152148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,369 DEBUG Processing 421/702 atomic regions from SNP 126015 to 126615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,390 DEBUG Processing 532/730 atomic regions from SNP 159540 to 160140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,481 DEBUG Processing 507/746 atomic regions from SNP 151848 to 152448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,509 DEBUG Processing 778/853 atomic regions from SNP 233370 to 233970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,577 DEBUG Processing 422/702 atomic regions from SNP 126315 to 126915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,605 DEBUG Processing 533/730 atomic regions from SNP 159840 to 160440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,703 DEBUG Processing 508/746 atomic regions from SNP 152148 to 152748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,755 DEBUG Processing 779/853 atomic regions from SNP 233670 to 234270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,803 DEBUG Processing 423/702 atomic regions from SNP 126615 to 127215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,822 DEBUG Processing 534/730 atomic regions from SNP 160140 to 160740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,916 DEBUG Processing 509/746 atomic regions from SNP 152448 to 153048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,989 DEBUG Processing 780/853 atomic regions from SNP 233970 to 234570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,029 DEBUG Processing 424/702 atomic regions from SNP 126915 to 127515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,039 DEBUG Processing 535/730 atomic regions from SNP 160440 to 161040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,129 DEBUG Processing 510/746 atomic regions from SNP 152748 to 153348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,228 DEBUG Processing 781/853 atomic regions from SNP 234270 to 234870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,248 DEBUG Processing 425/702 atomic regions from SNP 127215 to 127815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,256 DEBUG Processing 536/730 atomic regions from SNP 160740 to 161340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,338 DEBUG Processing 511/746 atomic regions from SNP 153048 to 153648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,467 DEBUG Processing 782/853 atomic regions from SNP 234570 to 235170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,474 DEBUG Processing 537/730 atomic regions from SNP 161040 to 161640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,480 DEBUG Processing 426/702 atomic regions from SNP 127515 to 128115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,548 DEBUG Processing 512/746 atomic regions from SNP 153348 to 153948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,695 DEBUG Processing 538/730 atomic regions from SNP 161340 to 161940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,707 DEBUG Processing 783/853 atomic regions from SNP 234870 to 235470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,717 DEBUG Processing 427/702 atomic regions from SNP 127815 to 128415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,775 DEBUG Processing 513/746 atomic regions from SNP 153648 to 154248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,916 DEBUG Processing 539/730 atomic regions from SNP 161640 to 162240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,947 DEBUG Processing 784/853 atomic regions from SNP 235170 to 235770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,964 DEBUG Processing 428/702 atomic regions from SNP 128115 to 128715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,005 DEBUG Processing 514/746 atomic regions from SNP 153948 to 154548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,133 DEBUG Processing 540/730 atomic regions from SNP 161940 to 162540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,187 DEBUG Processing 785/853 atomic regions from SNP 235470 to 236070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,191 DEBUG Processing 429/702 atomic regions from SNP 128415 to 129015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,235 DEBUG Processing 515/746 atomic regions from SNP 154248 to 154848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,358 DEBUG Processing 541/730 atomic regions from SNP 162240 to 162840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,414 DEBUG Processing 430/702 atomic regions from SNP 128715 to 129315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,430 DEBUG Processing 786/853 atomic regions from SNP 235770 to 236370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,448 DEBUG Processing 516/746 atomic regions from SNP 154548 to 155148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,582 DEBUG Processing 542/730 atomic regions from SNP 162540 to 163140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,634 DEBUG Processing 431/702 atomic regions from SNP 129015 to 129615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,667 DEBUG Processing 517/746 atomic regions from SNP 154848 to 155448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,672 DEBUG Processing 787/853 atomic regions from SNP 236070 to 236670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,808 DEBUG Processing 543/730 atomic regions from SNP 162840 to 163440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,863 DEBUG Processing 432/702 atomic regions from SNP 129315 to 129915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,887 DEBUG Processing 518/746 atomic regions from SNP 155148 to 155748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,915 DEBUG Processing 788/853 atomic regions from SNP 236370 to 236970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,029 DEBUG Processing 544/730 atomic regions from SNP 163140 to 163740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,078 DEBUG Processing 433/702 atomic regions from SNP 129615 to 130215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,103 DEBUG Processing 519/746 atomic regions from SNP 155448 to 156048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,153 DEBUG Processing 789/853 atomic regions from SNP 236670 to 237270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,253 DEBUG Processing 545/730 atomic regions from SNP 163440 to 164040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,325 DEBUG Processing 520/746 atomic regions from SNP 155748 to 156348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,326 DEBUG Processing 434/702 atomic regions from SNP 129915 to 130515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,394 DEBUG Processing 790/853 atomic regions from SNP 236970 to 237570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,454 DEBUG Segmenting atomic regions: 2025-01-31 09:50:23,474 DEBUG Processing 546/730 atomic regions from SNP 163740 to 164340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,538 DEBUG Processing 1/664 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:23,548 DEBUG Processing 521/746 atomic regions from SNP 156048 to 156648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,561 DEBUG Processing 435/702 atomic regions from SNP 130215 to 130815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,633 DEBUG Processing 791/853 atomic regions from SNP 237270 to 237870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,690 DEBUG Processing 547/730 atomic regions from SNP 164040 to 164640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,739 DEBUG Processing 2/664 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:23,768 DEBUG Processing 522/746 atomic regions from SNP 156348 to 156948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,800 DEBUG Processing 436/702 atomic regions from SNP 130515 to 131115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,872 DEBUG Processing 792/853 atomic regions from SNP 237570 to 238170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,908 DEBUG Processing 548/730 atomic regions from SNP 164340 to 164940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,944 DEBUG Processing 3/664 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:23,988 DEBUG Processing 523/746 atomic regions from SNP 156648 to 157248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,035 DEBUG Processing 437/702 atomic regions from SNP 130815 to 131415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,108 DEBUG Processing 793/853 atomic regions from SNP 237870 to 238470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,122 DEBUG Processing 549/730 atomic regions from SNP 164640 to 165240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,140 DEBUG Processing 4/664 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:24,207 DEBUG Processing 524/746 atomic regions from SNP 156948 to 157548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,255 DEBUG Processing 438/702 atomic regions from SNP 131115 to 131715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,342 DEBUG Processing 550/730 atomic regions from SNP 164940 to 165540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,343 DEBUG Processing 5/664 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:24,350 DEBUG Processing 794/853 atomic regions from SNP 238170 to 238770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,422 DEBUG Processing 525/746 atomic regions from SNP 157248 to 157848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,485 DEBUG Processing 439/702 atomic regions from SNP 131415 to 132015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,541 DEBUG Processing 6/664 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:24,564 DEBUG Processing 551/730 atomic regions from SNP 165240 to 165840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,593 DEBUG Processing 795/853 atomic regions from SNP 238470 to 239070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,653 DEBUG Processing 526/746 atomic regions from SNP 157548 to 158148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,713 DEBUG Processing 440/702 atomic regions from SNP 131715 to 132315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,741 DEBUG Processing 7/664 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:24,785 DEBUG Processing 552/730 atomic regions from SNP 165540 to 166140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,831 DEBUG Processing 796/853 atomic regions from SNP 238770 to 239370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,885 DEBUG Processing 527/746 atomic regions from SNP 157848 to 158448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,929 DEBUG Processing 441/702 atomic regions from SNP 132015 to 132615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,942 DEBUG Processing 8/664 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:25,003 DEBUG Processing 553/730 atomic regions from SNP 165840 to 166440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,068 DEBUG Processing 797/853 atomic regions from SNP 239070 to 239670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,098 DEBUG Processing 528/746 atomic regions from SNP 158148 to 158748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,144 DEBUG Processing 9/664 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:25,153 DEBUG Processing 442/702 atomic regions from SNP 132315 to 132915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,225 DEBUG Processing 554/730 atomic regions from SNP 166140 to 166740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,307 DEBUG Processing 798/853 atomic regions from SNP 239370 to 239970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,310 DEBUG Processing 529/746 atomic regions from SNP 158448 to 159048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,340 DEBUG Processing 10/664 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:25,394 DEBUG Processing 443/702 atomic regions from SNP 132615 to 133215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,443 DEBUG Processing 555/730 atomic regions from SNP 166440 to 167040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,523 DEBUG Processing 530/746 atomic regions from SNP 158748 to 159348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,535 DEBUG Processing 11/664 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:25,537 DEBUG Processing 799/853 atomic regions from SNP 239670 to 240270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,609 DEBUG Processing 444/702 atomic regions from SNP 132915 to 133515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,662 DEBUG Processing 556/730 atomic regions from SNP 166740 to 167340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,733 DEBUG Processing 12/664 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:25,761 DEBUG Processing 531/746 atomic regions from SNP 159048 to 159648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,772 DEBUG Processing 800/853 atomic regions from SNP 239970 to 240570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,852 DEBUG Processing 445/702 atomic regions from SNP 133215 to 133815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,886 DEBUG Processing 557/730 atomic regions from SNP 167040 to 167640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,939 DEBUG Processing 13/664 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:25,985 DEBUG Processing 532/746 atomic regions from SNP 159348 to 159948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,006 DEBUG Processing 801/853 atomic regions from SNP 240270 to 240870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,085 DEBUG Processing 446/702 atomic regions from SNP 133515 to 134115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,105 DEBUG Processing 558/730 atomic regions from SNP 167340 to 167940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,146 DEBUG Processing 14/664 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:26,201 DEBUG Processing 533/746 atomic regions from SNP 159648 to 160248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,236 DEBUG Processing 802/853 atomic regions from SNP 240570 to 241170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,300 DEBUG Processing 447/702 atomic regions from SNP 133815 to 134415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,325 DEBUG Processing 559/730 atomic regions from SNP 167640 to 168240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,348 DEBUG Processing 15/664 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:26,416 DEBUG Processing 534/746 atomic regions from SNP 159948 to 160548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,469 DEBUG Processing 803/853 atomic regions from SNP 240870 to 241470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,519 DEBUG Processing 448/702 atomic regions from SNP 134115 to 134715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,547 DEBUG Processing 560/730 atomic regions from SNP 167940 to 168540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,553 DEBUG Processing 16/664 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:26,630 DEBUG Processing 535/746 atomic regions from SNP 160248 to 160848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,702 DEBUG Processing 804/853 atomic regions from SNP 241170 to 241770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,734 DEBUG Processing 449/702 atomic regions from SNP 134415 to 135015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,752 DEBUG Processing 17/664 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:26,766 DEBUG Processing 561/730 atomic regions from SNP 168240 to 168840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,843 DEBUG Processing 536/746 atomic regions from SNP 160548 to 161148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,935 DEBUG Processing 805/853 atomic regions from SNP 241470 to 242070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,947 DEBUG Processing 450/702 atomic regions from SNP 134715 to 135315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,952 DEBUG Processing 18/664 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:26,985 DEBUG Processing 562/730 atomic regions from SNP 168540 to 169140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,056 DEBUG Processing 537/746 atomic regions from SNP 160848 to 161448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,152 DEBUG Processing 19/664 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:27,162 DEBUG Processing 451/702 atomic regions from SNP 135015 to 135615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,170 DEBUG Processing 806/853 atomic regions from SNP 241770 to 242370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,200 DEBUG Processing 563/730 atomic regions from SNP 168840 to 169440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,277 DEBUG Processing 538/746 atomic regions from SNP 161148 to 161748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,354 DEBUG Processing 20/664 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:27,379 DEBUG Processing 452/702 atomic regions from SNP 135315 to 135915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,407 DEBUG Processing 807/853 atomic regions from SNP 242070 to 242670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,417 DEBUG Processing 564/730 atomic regions from SNP 169140 to 169740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,489 DEBUG Processing 539/746 atomic regions from SNP 161448 to 162048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,556 DEBUG Processing 21/664 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:27,594 DEBUG Processing 453/702 atomic regions from SNP 135615 to 136215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,631 DEBUG Processing 565/730 atomic regions from SNP 169440 to 170040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,643 DEBUG Processing 808/853 atomic regions from SNP 242370 to 242970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,703 DEBUG Processing 540/746 atomic regions from SNP 161748 to 162348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,761 DEBUG Processing 22/664 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:27,817 DEBUG Processing 454/702 atomic regions from SNP 135915 to 136515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,848 DEBUG Processing 566/730 atomic regions from SNP 169740 to 170340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,879 DEBUG Processing 809/853 atomic regions from SNP 242670 to 243270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,920 DEBUG Processing 541/746 atomic regions from SNP 162048 to 162648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,965 DEBUG Processing 23/664 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:28,035 DEBUG Processing 455/702 atomic regions from SNP 136215 to 136815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,063 DEBUG Processing 567/730 atomic regions from SNP 170040 to 170640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,115 DEBUG Processing 810/853 atomic regions from SNP 242970 to 243570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,137 DEBUG Processing 542/746 atomic regions from SNP 162348 to 162948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,166 DEBUG Processing 24/664 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:28,250 DEBUG Processing 456/702 atomic regions from SNP 136515 to 137115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,278 DEBUG Processing 568/730 atomic regions from SNP 170340 to 170940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,319 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:50:28,350 DEBUG Processing 543/746 atomic regions from SNP 162648 to 163248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,352 DEBUG Processing 811/853 atomic regions from SNP 243270 to 243870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,364 DEBUG Processing 25/664 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:28,468 DEBUG Processing 457/702 atomic regions from SNP 136815 to 137415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,496 DEBUG Processing 569/730 atomic regions from SNP 170640 to 171240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,570 DEBUG Processing 26/664 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:28,576 DEBUG Processing 544/746 atomic regions from SNP 162948 to 163548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,589 DEBUG Processing 812/853 atomic regions from SNP 243570 to 244170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,694 DEBUG Processing 458/702 atomic regions from SNP 137115 to 137715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,719 DEBUG Processing 570/730 atomic regions from SNP 170940 to 171540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,776 DEBUG Processing 27/664 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:28,799 DEBUG Processing 545/746 atomic regions from SNP 163248 to 163848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,834 DEBUG Processing 813/853 atomic regions from SNP 243870 to 244470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,911 DEBUG Processing 459/702 atomic regions from SNP 137415 to 138015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,936 DEBUG Processing 571/730 atomic regions from SNP 171240 to 171840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,981 DEBUG Processing 28/664 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:29,019 DEBUG Processing 546/746 atomic regions from SNP 163548 to 164148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,072 DEBUG Processing 814/853 atomic regions from SNP 244170 to 244770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,124 DEBUG Processing 460/702 atomic regions from SNP 137715 to 138315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,151 DEBUG Processing 572/730 atomic regions from SNP 171540 to 172140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,184 DEBUG Processing 29/664 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:29,235 DEBUG Processing 547/746 atomic regions from SNP 163848 to 164448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,309 DEBUG Processing 815/853 atomic regions from SNP 244470 to 245070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,338 DEBUG Processing 461/702 atomic regions from SNP 138015 to 138615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,371 DEBUG Processing 573/730 atomic regions from SNP 171840 to 172440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,390 DEBUG Processing 30/664 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:29,462 DEBUG Processing 548/746 atomic regions from SNP 164148 to 164748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,549 DEBUG Processing 816/853 atomic regions from SNP 244770 to 245370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,559 DEBUG Processing 462/702 atomic regions from SNP 138315 to 138915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,590 DEBUG Processing 574/730 atomic regions from SNP 172140 to 172740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,592 DEBUG Processing 31/664 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:29,688 DEBUG Processing 549/746 atomic regions from SNP 164448 to 165048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,778 DEBUG Processing 463/702 atomic regions from SNP 138615 to 139215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,791 DEBUG Processing 32/664 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:29,791 DEBUG Processing 817/853 atomic regions from SNP 245070 to 245670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,806 DEBUG Processing 575/730 atomic regions from SNP 172440 to 173040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,911 DEBUG Processing 550/746 atomic regions from SNP 164748 to 165348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,000 DEBUG Processing 33/664 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:30,009 DEBUG Processing 464/702 atomic regions from SNP 138915 to 139515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,026 DEBUG Processing 576/730 atomic regions from SNP 172740 to 173340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,030 DEBUG Processing 818/853 atomic regions from SNP 245370 to 245970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,131 DEBUG Processing 551/746 atomic regions from SNP 165048 to 165648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,210 DEBUG Processing 34/664 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:30,231 DEBUG Processing 465/702 atomic regions from SNP 139215 to 139815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,244 DEBUG Processing 577/730 atomic regions from SNP 173040 to 173640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,268 DEBUG Processing 819/853 atomic regions from SNP 245670 to 246270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,353 DEBUG Processing 552/746 atomic regions from SNP 165348 to 165948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,421 DEBUG Processing 35/664 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:30,458 DEBUG Processing 466/702 atomic regions from SNP 139515 to 140115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,467 DEBUG Processing 578/730 atomic regions from SNP 173340 to 173940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,509 DEBUG Processing 820/853 atomic regions from SNP 245970 to 246570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,570 DEBUG Processing 553/746 atomic regions from SNP 165648 to 166248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,631 DEBUG Processing 36/664 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:30,680 DEBUG Processing 467/702 atomic regions from SNP 139815 to 140415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,684 DEBUG Processing 579/730 atomic regions from SNP 173640 to 174240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,751 DEBUG Processing 821/853 atomic regions from SNP 246270 to 246870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,791 DEBUG Processing 554/746 atomic regions from SNP 165948 to 166548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,841 DEBUG Processing 37/664 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:30,903 DEBUG Processing 468/702 atomic regions from SNP 140115 to 140715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,906 DEBUG Processing 580/730 atomic regions from SNP 173940 to 174540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,991 DEBUG Processing 822/853 atomic regions from SNP 246570 to 247170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,008 DEBUG Processing 555/746 atomic regions from SNP 166248 to 166848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,042 DEBUG Processing 38/664 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,125 DEBUG Processing 469/702 atomic regions from SNP 140415 to 141015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,153 DEBUG Processing 581/730 atomic regions from SNP 174240 to 174840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,225 DEBUG Processing 556/746 atomic regions from SNP 166548 to 167148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,227 DEBUG Processing 823/853 atomic regions from SNP 246870 to 247470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,241 DEBUG Processing 39/664 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,344 DEBUG Processing 470/702 atomic regions from SNP 140715 to 141315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,380 DEBUG Processing 582/730 atomic regions from SNP 174540 to 175140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,444 DEBUG Processing 40/664 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,446 DEBUG Processing 557/746 atomic regions from SNP 166848 to 167448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,468 DEBUG Processing 824/853 atomic regions from SNP 247170 to 247770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,561 DEBUG Processing 471/702 atomic regions from SNP 141015 to 141615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,603 DEBUG Processing 583/730 atomic regions from SNP 174840 to 175440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,646 DEBUG Processing 41/664 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,665 DEBUG Processing 558/746 atomic regions from SNP 167148 to 167748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,708 DEBUG Processing 825/853 atomic regions from SNP 247470 to 248070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,780 DEBUG Processing 472/702 atomic regions from SNP 141315 to 141915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,844 DEBUG Processing 584/730 atomic regions from SNP 175140 to 175740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,858 DEBUG Processing 42/664 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:31,894 DEBUG Processing 559/746 atomic regions from SNP 167448 to 168048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,954 DEBUG Processing 826/853 atomic regions from SNP 247770 to 248370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,994 DEBUG Processing 473/702 atomic regions from SNP 141615 to 142215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,070 DEBUG Processing 43/664 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,103 DEBUG Processing 585/730 atomic regions from SNP 175440 to 176040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,126 DEBUG Processing 560/746 atomic regions from SNP 167748 to 168348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,204 DEBUG Processing 827/853 atomic regions from SNP 248070 to 248670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,217 DEBUG Processing 474/702 atomic regions from SNP 141915 to 142515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,278 DEBUG Processing 44/664 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,354 DEBUG Processing 561/746 atomic regions from SNP 168048 to 168648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,364 DEBUG Processing 586/730 atomic regions from SNP 175740 to 176340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,454 DEBUG Processing 475/702 atomic regions from SNP 142215 to 142815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,458 DEBUG Processing 828/853 atomic regions from SNP 248370 to 248970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,516 DEBUG Processing 45/664 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,665 DEBUG Processing 562/746 atomic regions from SNP 168348 to 168948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,700 DEBUG Processing 587/730 atomic regions from SNP 176040 to 176640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,756 DEBUG Processing 476/702 atomic regions from SNP 142515 to 143115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,792 DEBUG Processing 829/853 atomic regions from SNP 248670 to 249270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,800 DEBUG Processing 46/664 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:32,894 DEBUG Processing 563/746 atomic regions from SNP 168648 to 169248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,972 DEBUG Processing 588/730 atomic regions from SNP 176340 to 176940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,003 DEBUG Processing 477/702 atomic regions from SNP 142815 to 143415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,058 DEBUG Processing 47/664 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,097 DEBUG Processing 830/853 atomic regions from SNP 248970 to 249570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,136 DEBUG Processing 564/746 atomic regions from SNP 168948 to 169548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,257 DEBUG Processing 589/730 atomic regions from SNP 176640 to 177240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,261 DEBUG Processing 478/702 atomic regions from SNP 143115 to 143715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,309 DEBUG Processing 48/664 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,391 DEBUG Processing 565/746 atomic regions from SNP 169248 to 169848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,399 DEBUG Processing 831/853 atomic regions from SNP 249270 to 249870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,484 DEBUG Processing 479/702 atomic regions from SNP 143415 to 144015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,511 DEBUG Processing 590/730 atomic regions from SNP 176940 to 177540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,516 DEBUG Processing 49/664 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,613 DEBUG Processing 566/746 atomic regions from SNP 169548 to 170148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,655 DEBUG Processing 832/853 atomic regions from SNP 249570 to 250170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,723 DEBUG Processing 480/702 atomic regions from SNP 143715 to 144315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,726 DEBUG Processing 50/664 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,756 DEBUG Processing 591/730 atomic regions from SNP 177240 to 177840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,844 DEBUG Processing 567/746 atomic regions from SNP 169848 to 170448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,901 DEBUG Processing 833/853 atomic regions from SNP 249870 to 250470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,938 DEBUG Processing 51/664 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:33,956 DEBUG Processing 481/702 atomic regions from SNP 144015 to 144615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,980 DEBUG Processing 592/730 atomic regions from SNP 177540 to 178140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,057 DEBUG Processing 568/746 atomic regions from SNP 170148 to 170748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,141 DEBUG Processing 834/853 atomic regions from SNP 250170 to 250770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,146 DEBUG Processing 52/664 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:34,180 DEBUG Processing 482/702 atomic regions from SNP 144315 to 144915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,202 DEBUG Processing 593/730 atomic regions from SNP 177840 to 178440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,269 DEBUG Processing 569/746 atomic regions from SNP 170448 to 171048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,357 DEBUG Processing 53/664 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:34,386 DEBUG Processing 835/853 atomic regions from SNP 250470 to 251070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,423 DEBUG Processing 483/702 atomic regions from SNP 144615 to 145215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,432 DEBUG Processing 594/730 atomic regions from SNP 178140 to 178740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,488 DEBUG Processing 570/746 atomic regions from SNP 170748 to 171348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,563 DEBUG Processing 54/664 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:34,640 DEBUG Processing 836/853 atomic regions from SNP 250770 to 251370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,674 DEBUG Processing 484/702 atomic regions from SNP 144915 to 145515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,676 DEBUG Processing 595/730 atomic regions from SNP 178440 to 179040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,715 DEBUG Processing 571/746 atomic regions from SNP 171048 to 171648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,769 DEBUG Processing 55/664 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:34,908 DEBUG Processing 837/853 atomic regions from SNP 251070 to 251670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,926 DEBUG Processing 485/702 atomic regions from SNP 145215 to 145815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,937 DEBUG Processing 596/730 atomic regions from SNP 178740 to 179340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,952 DEBUG Processing 572/746 atomic regions from SNP 171348 to 171948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,982 DEBUG Processing 56/664 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,167 DEBUG Processing 838/853 atomic regions from SNP 251370 to 251970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,173 DEBUG Processing 486/702 atomic regions from SNP 145515 to 146115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,178 DEBUG Processing 597/730 atomic regions from SNP 179040 to 179640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,185 DEBUG Processing 573/746 atomic regions from SNP 171648 to 172248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,199 DEBUG Processing 57/664 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,411 DEBUG Processing 839/853 atomic regions from SNP 251670 to 252270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,416 DEBUG Processing 58/664 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,417 DEBUG Processing 574/746 atomic regions from SNP 171948 to 172548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,424 DEBUG Processing 598/730 atomic regions from SNP 179340 to 179940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,427 DEBUG Processing 487/702 atomic regions from SNP 145815 to 146415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,634 DEBUG Processing 59/664 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,654 DEBUG Processing 575/746 atomic regions from SNP 172248 to 172848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,660 DEBUG Processing 488/702 atomic regions from SNP 146115 to 146715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,663 DEBUG Processing 840/853 atomic regions from SNP 251970 to 252570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,667 DEBUG Processing 599/730 atomic regions from SNP 179640 to 180240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,839 DEBUG Processing 60/664 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:35,878 DEBUG Processing 576/746 atomic regions from SNP 172548 to 173148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,880 DEBUG Processing 489/702 atomic regions from SNP 146415 to 147015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,892 DEBUG Processing 600/730 atomic regions from SNP 179940 to 180540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,910 DEBUG Processing 841/853 atomic regions from SNP 252270 to 252870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,046 DEBUG Processing 61/664 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,116 DEBUG Processing 577/746 atomic regions from SNP 172848 to 173448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,126 DEBUG Processing 490/702 atomic regions from SNP 146715 to 147315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,128 DEBUG Processing 601/730 atomic regions from SNP 180240 to 180840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,172 DEBUG Processing 842/853 atomic regions from SNP 252570 to 253170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,240 DEBUG Processing 62/664 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,340 DEBUG Processing 578/746 atomic regions from SNP 173148 to 173748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,353 DEBUG Processing 602/730 atomic regions from SNP 180540 to 181140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,367 DEBUG Processing 491/702 atomic regions from SNP 147015 to 147615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,419 DEBUG Processing 843/853 atomic regions from SNP 252870 to 253470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,434 DEBUG Processing 63/664 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,559 DEBUG Processing 579/746 atomic regions from SNP 173448 to 174048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,566 DEBUG Processing 603/730 atomic regions from SNP 180840 to 181440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,607 DEBUG Processing 492/702 atomic regions from SNP 147315 to 147915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,660 DEBUG Processing 64/664 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,662 DEBUG Processing 844/853 atomic regions from SNP 253170 to 253770 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,779 DEBUG Processing 580/746 atomic regions from SNP 173748 to 174348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,783 DEBUG Processing 604/730 atomic regions from SNP 181140 to 181740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,844 DEBUG Processing 493/702 atomic regions from SNP 147615 to 148215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,862 DEBUG Processing 65/664 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:36,907 DEBUG Processing 845/853 atomic regions from SNP 253470 to 254070 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,992 DEBUG Processing 605/730 atomic regions from SNP 181440 to 182040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,994 DEBUG Processing 581/746 atomic regions from SNP 174048 to 174648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,058 DEBUG Processing 494/702 atomic regions from SNP 147915 to 148515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,064 DEBUG Processing 66/664 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,149 DEBUG Processing 846/853 atomic regions from SNP 253770 to 254370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,212 DEBUG Processing 606/730 atomic regions from SNP 181740 to 182340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,221 DEBUG Processing 582/746 atomic regions from SNP 174348 to 174948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,267 DEBUG Processing 67/664 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,275 DEBUG Processing 495/702 atomic regions from SNP 148215 to 148815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,396 DEBUG Processing 847/853 atomic regions from SNP 254070 to 254670 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,432 DEBUG Processing 607/730 atomic regions from SNP 182040 to 182640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,437 DEBUG Processing 583/746 atomic regions from SNP 174648 to 175248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,466 DEBUG Processing 68/664 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,492 DEBUG Processing 496/702 atomic regions from SNP 148515 to 149115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,641 DEBUG Processing 848/853 atomic regions from SNP 254370 to 254970 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,655 DEBUG Processing 608/730 atomic regions from SNP 182340 to 182940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,657 DEBUG Processing 584/746 atomic regions from SNP 174948 to 175548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,668 DEBUG Processing 69/664 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,708 DEBUG Processing 497/702 atomic regions from SNP 148815 to 149415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,876 DEBUG Processing 70/664 atomic regions from SNP 20769 to 21369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:37,882 DEBUG Processing 585/746 atomic regions from SNP 175248 to 175848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,883 DEBUG Processing 609/730 atomic regions from SNP 182640 to 183240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,890 DEBUG Processing 849/853 atomic regions from SNP 254670 to 255270 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,929 DEBUG Processing 498/702 atomic regions from SNP 149115 to 149715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,100 DEBUG Processing 71/664 atomic regions from SNP 21069 to 21669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:38,110 DEBUG Processing 610/730 atomic regions from SNP 182940 to 183540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,116 DEBUG Processing 586/746 atomic regions from SNP 175548 to 176148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,148 DEBUG Processing 850/853 atomic regions from SNP 254970 to 255570 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,160 DEBUG Processing 499/702 atomic regions from SNP 149415 to 150015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,324 DEBUG Processing 72/664 atomic regions from SNP 21369 to 21969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:38,340 DEBUG Processing 587/746 atomic regions from SNP 175848 to 176448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,341 DEBUG Processing 611/730 atomic regions from SNP 183240 to 183840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,380 DEBUG Processing 500/702 atomic regions from SNP 149715 to 150315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,404 DEBUG Processing 851/853 atomic regions from SNP 255270 to 255870 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,551 DEBUG Processing 73/664 atomic regions from SNP 21669 to 22269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:38,567 DEBUG Processing 588/746 atomic regions from SNP 176148 to 176748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,574 DEBUG Processing 612/730 atomic regions from SNP 183540 to 184140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,603 DEBUG Processing 501/702 atomic regions from SNP 150015 to 150615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,657 DEBUG Processing 852/853 atomic regions from SNP 255570 to 256170 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,779 DEBUG Processing 74/664 atomic regions from SNP 21969 to 22569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:38,787 DEBUG Processing 589/746 atomic regions from SNP 176448 to 177048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,806 DEBUG Processing 613/730 atomic regions from SNP 183840 to 184440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,824 DEBUG Processing 502/702 atomic regions from SNP 150315 to 150915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,909 DEBUG Processing 853/853 atomic regions from SNP 255870 to 256470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,007 DEBUG Processing 590/746 atomic regions from SNP 176748 to 177348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,013 DEBUG Processing 75/664 atomic regions from SNP 22269 to 22869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,032 DEBUG Processing 614/730 atomic regions from SNP 184140 to 184740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,044 DEBUG Unique SNPs positions in subchromosome 1: 256471 2025-01-31 09:50:39,047 DEBUG Processing 503/702 atomic regions from SNP 150615 to 151215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,228 DEBUG Processing 591/746 atomic regions from SNP 177048 to 177648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,253 DEBUG Processing 615/730 atomic regions from SNP 184440 to 185040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,253 DEBUG Processing 76/664 atomic regions from SNP 22569 to 23169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,271 DEBUG Processing 504/702 atomic regions from SNP 150915 to 151515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,447 DEBUG Processing 592/746 atomic regions from SNP 177348 to 177948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,473 DEBUG Processing 616/730 atomic regions from SNP 184740 to 185340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,493 DEBUG Processing 77/664 atomic regions from SNP 22869 to 23469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,495 DEBUG Processing 505/702 atomic regions from SNP 151215 to 151815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,669 DEBUG Processing 593/746 atomic regions from SNP 177648 to 178248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,694 DEBUG Processing 617/730 atomic regions from SNP 185040 to 185640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,716 DEBUG Processing 506/702 atomic regions from SNP 151515 to 152115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,736 DEBUG Processing 78/664 atomic regions from SNP 23169 to 23769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:39,889 DEBUG Processing 594/746 atomic regions from SNP 177948 to 178548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,918 DEBUG Processing 618/730 atomic regions from SNP 185340 to 185940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,938 DEBUG Processing 507/702 atomic regions from SNP 151815 to 152415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,972 DEBUG Processing 79/664 atomic regions from SNP 23469 to 24069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,121 DEBUG Processing 595/746 atomic regions from SNP 178248 to 178848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,158 DEBUG Processing 619/730 atomic regions from SNP 185640 to 186240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,164 DEBUG Processing 508/702 atomic regions from SNP 152115 to 152715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,201 DEBUG Processing 80/664 atomic regions from SNP 23769 to 24369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,345 DEBUG Processing 596/746 atomic regions from SNP 178548 to 179148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,389 DEBUG Processing 509/702 atomic regions from SNP 152415 to 153015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,403 DEBUG Processing 620/730 atomic regions from SNP 185940 to 186540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,406 DEBUG Processing 81/664 atomic regions from SNP 24069 to 24669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,569 DEBUG Processing 597/746 atomic regions from SNP 178848 to 179448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,615 DEBUG Processing 510/702 atomic regions from SNP 152715 to 153315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,636 DEBUG Processing 82/664 atomic regions from SNP 24369 to 24969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,646 DEBUG Processing 621/730 atomic regions from SNP 186240 to 186840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,793 DEBUG Processing 598/746 atomic regions from SNP 179148 to 179748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,833 DEBUG Processing 511/702 atomic regions from SNP 153015 to 153615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,863 DEBUG Processing 83/664 atomic regions from SNP 24669 to 25269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:40,866 DEBUG Processing 622/730 atomic regions from SNP 186540 to 187140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,020 DEBUG Processing 599/746 atomic regions from SNP 179448 to 180048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,057 DEBUG Processing 512/702 atomic regions from SNP 153315 to 153915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,091 DEBUG Processing 84/664 atomic regions from SNP 24969 to 25569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,094 DEBUG Processing 623/730 atomic regions from SNP 186840 to 187440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,243 DEBUG Processing 600/746 atomic regions from SNP 179748 to 180348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,278 DEBUG Processing 513/702 atomic regions from SNP 153615 to 154215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,322 DEBUG Processing 85/664 atomic regions from SNP 25269 to 25869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,333 DEBUG Processing 624/730 atomic regions from SNP 187140 to 187740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,462 DEBUG Processing 601/746 atomic regions from SNP 180048 to 180648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,499 DEBUG Processing 514/702 atomic regions from SNP 153915 to 154515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,525 DEBUG Processing 86/664 atomic regions from SNP 25569 to 26169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,568 DEBUG Processing 625/730 atomic regions from SNP 187440 to 188040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,683 DEBUG Processing 602/746 atomic regions from SNP 180348 to 180948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,718 DEBUG Processing 515/702 atomic regions from SNP 154215 to 154815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,724 DEBUG Processing 87/664 atomic regions from SNP 25869 to 26469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,809 DEBUG Processing 626/730 atomic regions from SNP 187740 to 188340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,907 DEBUG Processing 603/746 atomic regions from SNP 180648 to 181248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,932 DEBUG Processing 88/664 atomic regions from SNP 26169 to 26769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:41,941 DEBUG Processing 516/702 atomic regions from SNP 154515 to 155115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,047 DEBUG Processing 627/730 atomic regions from SNP 188040 to 188640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,135 DEBUG Processing 604/746 atomic regions from SNP 180948 to 181548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,143 DEBUG Processing 89/664 atomic regions from SNP 26469 to 27069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:42,169 DEBUG Processing 517/702 atomic regions from SNP 154815 to 155415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,266 DEBUG Processing 628/730 atomic regions from SNP 188340 to 188940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,358 DEBUG Processing 90/664 atomic regions from SNP 26769 to 27369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:42,365 DEBUG Processing 605/746 atomic regions from SNP 181248 to 181848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,398 DEBUG Processing 518/702 atomic regions from SNP 155115 to 155715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,482 DEBUG Processing 629/730 atomic regions from SNP 188640 to 189240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,565 DEBUG Processing 91/664 atomic regions from SNP 27069 to 27669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:42,590 DEBUG Processing 606/746 atomic regions from SNP 181548 to 182148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,622 DEBUG Processing 519/702 atomic regions from SNP 155415 to 156015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,697 DEBUG Processing 630/730 atomic regions from SNP 188940 to 189540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,768 DEBUG Processing 92/664 atomic regions from SNP 27369 to 27969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:42,812 DEBUG Processing 607/746 atomic regions from SNP 181848 to 182448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,844 DEBUG Processing 520/702 atomic regions from SNP 155715 to 156315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,917 DEBUG Processing 631/730 atomic regions from SNP 189240 to 189840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,971 DEBUG Processing 93/664 atomic regions from SNP 27669 to 28269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,031 DEBUG Processing 608/746 atomic regions from SNP 182148 to 182748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,061 DEBUG Processing 521/702 atomic regions from SNP 156015 to 156615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,100 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:50:43,102 DEBUG chr9: Signal quantile: 0.989. signal threshold: 11. Best RMSEA: 0.015 2025-01-31 09:50:43,137 DEBUG Processing 632/730 atomic regions from SNP 189540 to 190140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,179 DEBUG Processing 94/664 atomic regions from SNP 27969 to 28569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,251 DEBUG Processing 609/746 atomic regions from SNP 182448 to 183048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,281 DEBUG Processing 522/702 atomic regions from SNP 156315 to 156915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,359 DEBUG Processing 633/730 atomic regions from SNP 189840 to 190440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,389 DEBUG Processing 95/664 atomic regions from SNP 28269 to 28869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,470 DEBUG Processing 610/746 atomic regions from SNP 182748 to 183348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,520 DEBUG Processing 523/702 atomic regions from SNP 156615 to 157215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,582 DEBUG Processing 634/730 atomic regions from SNP 190140 to 190740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,596 DEBUG Processing 96/664 atomic regions from SNP 28569 to 29169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,689 DEBUG Processing 611/746 atomic regions from SNP 183048 to 183648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,753 DEBUG Processing 524/702 atomic regions from SNP 156915 to 157515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,802 DEBUG Processing 97/664 atomic regions from SNP 28869 to 29469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:43,806 DEBUG Processing 635/730 atomic regions from SNP 190440 to 191040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,911 DEBUG Processing 612/746 atomic regions from SNP 183348 to 183948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,988 DEBUG Processing 525/702 atomic regions from SNP 157215 to 157815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,001 DEBUG Processing 98/664 atomic regions from SNP 29169 to 29769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:44,021 DEBUG Processing 636/730 atomic regions from SNP 190740 to 191340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,133 DEBUG Processing 613/746 atomic regions from SNP 183648 to 184248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,204 DEBUG Processing 99/664 atomic regions from SNP 29469 to 30069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:44,208 DEBUG Processing 526/702 atomic regions from SNP 157515 to 158115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,240 DEBUG Processing 637/730 atomic regions from SNP 191040 to 191640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,357 DEBUG Processing 614/746 atomic regions from SNP 183948 to 184548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,412 DEBUG Processing 100/664 atomic regions from SNP 29769 to 30369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:44,436 DEBUG Processing 527/702 atomic regions from SNP 157815 to 158415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,469 DEBUG Processing 638/730 atomic regions from SNP 191340 to 191940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,586 DEBUG Processing 615/746 atomic regions from SNP 184248 to 184848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,623 DEBUG Processing 101/664 atomic regions from SNP 30069 to 30669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:44,664 DEBUG Processing 528/702 atomic regions from SNP 158115 to 158715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,693 DEBUG Processing 639/730 atomic regions from SNP 191640 to 192240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,803 DEBUG Processing 616/746 atomic regions from SNP 184548 to 185148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,833 DEBUG Processing 102/664 atomic regions from SNP 30369 to 30969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:44,886 DEBUG Processing 529/702 atomic regions from SNP 158415 to 159015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,919 DEBUG Processing 640/730 atomic regions from SNP 191940 to 192540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,021 DEBUG Processing 617/746 atomic regions from SNP 184848 to 185448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,041 DEBUG Processing 103/664 atomic regions from SNP 30669 to 31269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,111 DEBUG Processing 530/702 atomic regions from SNP 158715 to 159315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,141 DEBUG Processing 641/730 atomic regions from SNP 192240 to 192840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,238 DEBUG Processing 618/746 atomic regions from SNP 185148 to 185748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,247 DEBUG Processing 104/664 atomic regions from SNP 30969 to 31569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,339 DEBUG Processing 531/702 atomic regions from SNP 159015 to 159615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,351 DEBUG chr9 total SNP count: 217255 2025-01-31 09:50:45,351 DEBUG chr9 length: 124595110 2025-01-31 09:50:45,351 DEBUG ----------------------------------------- 2025-01-31 09:50:45,351 INFO Processing SNPs in chr9 2025-01-31 09:50:45,366 DEBUG Processing 642/730 atomic regions from SNP 192540 to 193140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,451 DEBUG Processing 105/664 atomic regions from SNP 31269 to 31869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,458 DEBUG Processing 619/746 atomic regions from SNP 185448 to 186048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,563 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 217255)] 2025-01-31 09:50:45,563 DEBUG Processing 532/702 atomic regions from SNP 159315 to 159915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,586 DEBUG Processing 643/730 atomic regions from SNP 192840 to 193440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,646 DEBUG Processing 106/664 atomic regions from SNP 31569 to 32169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,671 DEBUG Processing 620/746 atomic regions from SNP 185748 to 186348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,708 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:45,785 DEBUG Processing 533/702 atomic regions from SNP 159615 to 160215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,806 DEBUG Processing 644/730 atomic regions from SNP 193140 to 193740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,868 DEBUG Processing 107/664 atomic regions from SNP 31869 to 32469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:45,883 DEBUG Processing 621/746 atomic regions from SNP 186048 to 186648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,004 DEBUG Processing 534/702 atomic regions from SNP 159915 to 160515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,024 DEBUG Processing 645/730 atomic regions from SNP 193440 to 194040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,082 DEBUG Processing 108/664 atomic regions from SNP 32169 to 32769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,100 DEBUG Processing 622/746 atomic regions from SNP 186348 to 186948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,222 DEBUG Processing 535/702 atomic regions from SNP 160215 to 160815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,241 DEBUG Processing 646/730 atomic regions from SNP 193740 to 194340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,283 DEBUG Processing 109/664 atomic regions from SNP 32469 to 33069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,319 DEBUG Processing 623/746 atomic regions from SNP 186648 to 187248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,441 DEBUG Processing 536/702 atomic regions from SNP 160515 to 161115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,460 DEBUG Processing 647/730 atomic regions from SNP 194040 to 194640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,491 DEBUG Processing 110/664 atomic regions from SNP 32769 to 33369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,541 DEBUG Processing 624/746 atomic regions from SNP 186948 to 187548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,589 DEBUG Subchromosome time: 242.73296577495057, subchromosome SNPs: 256471 2025-01-31 09:50:46,590 DEBUG Estimated BADs: [1.30, 0.65, 2.61, 1.30, 3.91, 1.30, 0.43, 2.61, 1.30, 0.65, 3.91, 1.30, 0.33, 0.65, 2.61, 3.91, 1.30, 0.65, 5.21, 2.61, 10.43, 1.30, 0.43, 1.30] SNP counts: [11237, 31733, 12048, 6544, 1744, 8411, 4820, 3433, 15542, 21519, 3336, 3286, 8698, 5930, 6102, 10211, 21870, 15388, 1469, 19202, 1142, 8567, 4038, 30201] SNP IDs counts: [11237, 31733, 12048, 6544, 1744, 8411, 4820, 3433, 15542, 21519, 3336, 3286, 8698, 5930, 6102, 10211, 21870, 15388, 1469, 19202, 1142, 8567, 4038, 30201] Critical gap: 664743bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.59Mbp, 28.38Mbp, 34.86Mbp, 38.51Mbp, 39.42Mbp, 44.31Mbp, 47.17Mbp, 49.20Mbp, 57.69Mbp, 70.75Mbp, 72.52Mbp, 74.38Mbp, 79.58Mbp, 83.00Mbp, 86.36Mbp, 91.87Mbp, 103.87Mbp, 112.84Mbp, 113.60Mbp, 124.65Mbp, 125.25Mbp, 129.94Mbp, 132.69Mbp, 149.74Mbp] 2025-01-31 09:50:46,590 DEBUG chr6 time: 242.73351830791216 s 2025-01-31 09:50:46,660 DEBUG Processing 537/702 atomic regions from SNP 160815 to 161415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,677 DEBUG Processing 648/730 atomic regions from SNP 194340 to 194940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,717 DEBUG Processing 111/664 atomic regions from SNP 33069 to 33669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,741 DEBUG chr6: Fitting background model for 24 segments 2025-01-31 09:50:46,761 DEBUG Processing 625/746 atomic regions from SNP 187248 to 187848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,879 DEBUG Processing 538/702 atomic regions from SNP 161115 to 161715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,896 DEBUG Processing 649/730 atomic regions from SNP 194640 to 195240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,937 DEBUG Processing 112/664 atomic regions from SNP 33369 to 33969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:46,981 DEBUG Processing 626/746 atomic regions from SNP 187548 to 188148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,100 DEBUG Processing 539/702 atomic regions from SNP 161415 to 162015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,123 DEBUG Processing 650/730 atomic regions from SNP 194940 to 195540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,145 DEBUG Processing 113/664 atomic regions from SNP 33669 to 34269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,201 DEBUG Processing 627/746 atomic regions from SNP 187848 to 188448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,334 DEBUG Processing 540/702 atomic regions from SNP 161715 to 162315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,350 DEBUG Processing 651/730 atomic regions from SNP 195240 to 195840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,353 DEBUG Processing 114/664 atomic regions from SNP 33969 to 34569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,420 DEBUG Processing 628/746 atomic regions from SNP 188148 to 188748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,555 DEBUG Processing 541/702 atomic regions from SNP 162015 to 162615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,557 DEBUG Processing 115/664 atomic regions from SNP 34269 to 34869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,578 DEBUG Processing 652/730 atomic regions from SNP 195540 to 196140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,646 DEBUG Processing 629/746 atomic regions from SNP 188448 to 189048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,763 DEBUG Processing 116/664 atomic regions from SNP 34569 to 35169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,776 DEBUG Processing 542/702 atomic regions from SNP 162315 to 162915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,811 DEBUG Processing 653/730 atomic regions from SNP 195840 to 196440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,878 DEBUG Processing 630/746 atomic regions from SNP 188748 to 189348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,962 DEBUG Processing 117/664 atomic regions from SNP 34869 to 35469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:47,990 DEBUG Processing 543/702 atomic regions from SNP 162615 to 163215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,039 DEBUG Processing 654/730 atomic regions from SNP 196140 to 196740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,103 DEBUG Processing 631/746 atomic regions from SNP 189048 to 189648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,161 DEBUG Processing 118/664 atomic regions from SNP 35169 to 35769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,207 DEBUG Processing 544/702 atomic regions from SNP 162915 to 163515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,284 DEBUG Processing 655/730 atomic regions from SNP 196440 to 197040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,328 DEBUG Processing 632/746 atomic regions from SNP 189348 to 189948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,363 DEBUG Processing 119/664 atomic regions from SNP 35469 to 36069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,419 DEBUG Processing 545/702 atomic regions from SNP 163215 to 163815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,544 DEBUG Processing 656/730 atomic regions from SNP 196740 to 197340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,553 DEBUG Processing 633/746 atomic regions from SNP 189648 to 190248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,565 DEBUG Processing 120/664 atomic regions from SNP 35769 to 36369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,632 DEBUG Processing 546/702 atomic regions from SNP 163515 to 164115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,770 DEBUG Processing 121/664 atomic regions from SNP 36069 to 36669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,776 DEBUG Processing 634/746 atomic regions from SNP 189948 to 190548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,808 DEBUG Processing 657/730 atomic regions from SNP 197040 to 197640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,852 DEBUG Processing 547/702 atomic regions from SNP 163815 to 164415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,971 DEBUG Processing 122/664 atomic regions from SNP 36369 to 36969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:48,993 DEBUG Processing 635/746 atomic regions from SNP 190248 to 190848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,069 DEBUG Processing 658/730 atomic regions from SNP 197340 to 197940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,074 DEBUG Processing 548/702 atomic regions from SNP 164115 to 164715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,166 DEBUG Processing 123/664 atomic regions from SNP 36669 to 37269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:49,211 DEBUG Processing 636/746 atomic regions from SNP 190548 to 191148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,295 DEBUG Processing 549/702 atomic regions from SNP 164415 to 165015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,318 DEBUG Processing 659/730 atomic regions from SNP 197640 to 198240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,363 DEBUG Processing 124/664 atomic regions from SNP 36969 to 37569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:49,429 DEBUG Processing 637/746 atomic regions from SNP 190848 to 191448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,515 DEBUG Processing 550/702 atomic regions from SNP 164715 to 165315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,553 DEBUG Processing 660/730 atomic regions from SNP 197940 to 198540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,567 DEBUG Processing 125/664 atomic regions from SNP 37269 to 37869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:49,645 DEBUG Processing 638/746 atomic regions from SNP 191148 to 191748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,729 DEBUG Processing 551/702 atomic regions from SNP 165015 to 165615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,770 DEBUG Processing 126/664 atomic regions from SNP 37569 to 38169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:49,784 DEBUG Processing 661/730 atomic regions from SNP 198240 to 198840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,864 DEBUG Processing 639/746 atomic regions from SNP 191448 to 192048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,958 DEBUG Processing 552/702 atomic regions from SNP 165315 to 165915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,967 DEBUG Processing 127/664 atomic regions from SNP 37869 to 38469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,015 DEBUG Processing 662/730 atomic regions from SNP 198540 to 199140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,082 DEBUG Processing 640/746 atomic regions from SNP 191748 to 192348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,162 DEBUG Processing 128/664 atomic regions from SNP 38169 to 38769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,201 DEBUG Processing 553/702 atomic regions from SNP 165615 to 166215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,238 DEBUG Processing 663/730 atomic regions from SNP 198840 to 199440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,300 DEBUG Processing 641/746 atomic regions from SNP 192048 to 192648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,360 DEBUG Processing 129/664 atomic regions from SNP 38469 to 39069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,429 DEBUG Processing 554/702 atomic regions from SNP 165915 to 166515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,464 DEBUG Processing 664/730 atomic regions from SNP 199140 to 199740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,519 DEBUG Processing 642/746 atomic regions from SNP 192348 to 192948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,559 DEBUG Processing 130/664 atomic regions from SNP 38769 to 39369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,643 DEBUG Processing 555/702 atomic regions from SNP 166215 to 166815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,688 DEBUG Processing 665/730 atomic regions from SNP 199440 to 200040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,735 DEBUG Processing 643/746 atomic regions from SNP 192648 to 193248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,765 DEBUG Processing 131/664 atomic regions from SNP 39069 to 39669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:50,856 DEBUG Processing 556/702 atomic regions from SNP 166515 to 167115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,912 DEBUG Processing 666/730 atomic regions from SNP 199740 to 200340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,955 DEBUG Processing 644/746 atomic regions from SNP 192948 to 193548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,983 DEBUG Processing 132/664 atomic regions from SNP 39369 to 39969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,074 DEBUG Processing 557/702 atomic regions from SNP 166815 to 167415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,143 DEBUG Processing 667/730 atomic regions from SNP 200040 to 200640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,172 DEBUG Processing 645/746 atomic regions from SNP 193248 to 193848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,194 DEBUG Processing 133/664 atomic regions from SNP 39669 to 40269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,286 DEBUG Processing 558/702 atomic regions from SNP 167115 to 167715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,365 DEBUG Processing 668/730 atomic regions from SNP 200340 to 200940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,390 DEBUG Processing 646/746 atomic regions from SNP 193548 to 194148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,397 DEBUG Processing 134/664 atomic regions from SNP 39969 to 40569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,498 DEBUG Processing 559/702 atomic regions from SNP 167415 to 168015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,586 DEBUG Processing 669/730 atomic regions from SNP 200640 to 201240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,608 DEBUG Processing 135/664 atomic regions from SNP 40269 to 40869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,608 DEBUG Processing 647/746 atomic regions from SNP 193848 to 194448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,728 DEBUG Processing 560/702 atomic regions from SNP 167715 to 168315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,823 DEBUG Processing 670/730 atomic regions from SNP 200940 to 201540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,826 DEBUG Processing 648/746 atomic regions from SNP 194148 to 194748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,839 DEBUG Processing 136/664 atomic regions from SNP 40569 to 41169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:51,949 DEBUG Processing 561/702 atomic regions from SNP 168015 to 168615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,039 DEBUG Processing 649/746 atomic regions from SNP 194448 to 195048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,051 DEBUG Processing 137/664 atomic regions from SNP 40869 to 41469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,080 DEBUG Processing 671/730 atomic regions from SNP 201240 to 201840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,167 DEBUG Processing 562/702 atomic regions from SNP 168315 to 168915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,254 DEBUG Processing 650/746 atomic regions from SNP 194748 to 195348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,272 DEBUG Processing 138/664 atomic regions from SNP 41169 to 41769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,337 DEBUG Processing 672/730 atomic regions from SNP 201540 to 202140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,383 DEBUG Processing 563/702 atomic regions from SNP 168615 to 169215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,467 DEBUG Processing 651/746 atomic regions from SNP 195048 to 195648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,499 DEBUG Processing 139/664 atomic regions from SNP 41469 to 42069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,582 DEBUG Processing 673/730 atomic regions from SNP 201840 to 202440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,600 DEBUG Processing 564/702 atomic regions from SNP 168915 to 169515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,681 DEBUG Processing 652/746 atomic regions from SNP 195348 to 195948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,728 DEBUG Processing 140/664 atomic regions from SNP 41769 to 42369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:52,815 DEBUG Processing 565/702 atomic regions from SNP 169215 to 169815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,836 DEBUG Processing 674/730 atomic regions from SNP 202140 to 202740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,896 DEBUG Processing 653/746 atomic regions from SNP 195648 to 196248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,955 DEBUG Processing 141/664 atomic regions from SNP 42069 to 42669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:53,030 DEBUG Processing 566/702 atomic regions from SNP 169515 to 170115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,087 DEBUG Processing 675/730 atomic regions from SNP 202440 to 203040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,113 DEBUG Processing 654/746 atomic regions from SNP 195948 to 196548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,164 DEBUG Processing 142/664 atomic regions from SNP 42369 to 42969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:53,242 DEBUG Processing 567/702 atomic regions from SNP 169815 to 170415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,337 DEBUG Processing 655/746 atomic regions from SNP 196248 to 196848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,347 DEBUG Processing 676/730 atomic regions from SNP 202740 to 203340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,367 DEBUG Processing 143/664 atomic regions from SNP 42669 to 43269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:53,463 DEBUG Processing 568/702 atomic regions from SNP 170115 to 170715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,557 DEBUG Processing 656/746 atomic regions from SNP 196548 to 197148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,581 DEBUG Processing 144/664 atomic regions from SNP 42969 to 43569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:53,608 DEBUG Processing 677/730 atomic regions from SNP 203040 to 203640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,682 DEBUG Processing 569/702 atomic regions from SNP 170415 to 171015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,787 DEBUG Processing 657/746 atomic regions from SNP 196848 to 197448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,809 DEBUG Processing 145/664 atomic regions from SNP 43269 to 43869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:53,863 DEBUG Processing 678/730 atomic regions from SNP 203340 to 203940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,902 DEBUG Processing 570/702 atomic regions from SNP 170715 to 171315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,004 DEBUG Processing 658/746 atomic regions from SNP 197148 to 197748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,033 DEBUG Processing 146/664 atomic regions from SNP 43569 to 44169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,118 DEBUG Processing 679/730 atomic regions from SNP 203640 to 204240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,119 DEBUG Processing 571/702 atomic regions from SNP 171015 to 171615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,218 DEBUG Processing 659/746 atomic regions from SNP 197448 to 198048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,231 DEBUG Processing 147/664 atomic regions from SNP 43869 to 44469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,334 DEBUG Processing 572/702 atomic regions from SNP 171315 to 171915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,353 DEBUG Processing 680/730 atomic regions from SNP 203940 to 204540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,440 DEBUG Processing 148/664 atomic regions from SNP 44169 to 44769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,443 DEBUG Processing 660/746 atomic regions from SNP 197748 to 198348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,546 DEBUG Processing 573/702 atomic regions from SNP 171615 to 172215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,582 DEBUG Processing 681/730 atomic regions from SNP 204240 to 204840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,644 DEBUG Processing 149/664 atomic regions from SNP 44469 to 45069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,665 DEBUG Processing 661/746 atomic regions from SNP 198048 to 198648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,760 DEBUG Processing 574/702 atomic regions from SNP 171915 to 172515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,813 DEBUG Processing 682/730 atomic regions from SNP 204540 to 205140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,851 DEBUG Processing 150/664 atomic regions from SNP 44769 to 45369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:54,891 DEBUG Processing 662/746 atomic regions from SNP 198348 to 198948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,972 DEBUG Processing 575/702 atomic regions from SNP 172215 to 172815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,043 DEBUG Processing 683/730 atomic regions from SNP 204840 to 205440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,056 DEBUG Processing 151/664 atomic regions from SNP 45069 to 45669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,112 DEBUG Processing 663/746 atomic regions from SNP 198648 to 199248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,186 DEBUG Processing 576/702 atomic regions from SNP 172515 to 173115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,257 DEBUG Processing 152/664 atomic regions from SNP 45369 to 45969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,290 DEBUG Processing 684/730 atomic regions from SNP 205140 to 205740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,329 DEBUG Processing 664/746 atomic regions from SNP 198948 to 199548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,400 DEBUG Processing 577/702 atomic regions from SNP 172815 to 173415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,455 DEBUG Processing 153/664 atomic regions from SNP 45669 to 46269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,543 DEBUG Processing 685/730 atomic regions from SNP 205440 to 206040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,545 DEBUG Processing 665/746 atomic regions from SNP 199248 to 199848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,617 DEBUG Processing 578/702 atomic regions from SNP 173115 to 173715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,654 DEBUG Processing 154/664 atomic regions from SNP 45969 to 46569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,758 DEBUG Processing 666/746 atomic regions from SNP 199548 to 200148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,801 DEBUG Processing 686/730 atomic regions from SNP 205740 to 206340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,838 DEBUG Processing 579/702 atomic regions from SNP 173415 to 174015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,859 DEBUG Processing 155/664 atomic regions from SNP 46269 to 46869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,982 DEBUG Processing 667/746 atomic regions from SNP 199848 to 200448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,054 DEBUG Processing 580/702 atomic regions from SNP 173715 to 174315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,059 DEBUG Processing 687/730 atomic regions from SNP 206040 to 206640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,062 DEBUG Processing 156/664 atomic regions from SNP 46569 to 47169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,216 DEBUG Processing 668/746 atomic regions from SNP 200148 to 200748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,262 DEBUG Processing 157/664 atomic regions from SNP 46869 to 47469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,291 DEBUG Processing 581/702 atomic regions from SNP 174015 to 174615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,304 DEBUG Processing 688/730 atomic regions from SNP 206340 to 206940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,437 DEBUG Processing 669/746 atomic regions from SNP 200448 to 201048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,470 DEBUG Processing 158/664 atomic regions from SNP 47169 to 47769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,514 DEBUG Processing 582/702 atomic regions from SNP 174315 to 174915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,552 DEBUG Processing 689/730 atomic regions from SNP 206640 to 207240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,656 DEBUG Processing 670/746 atomic regions from SNP 200748 to 201348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,683 DEBUG Processing 159/664 atomic regions from SNP 47469 to 48069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,731 DEBUG Processing 583/702 atomic regions from SNP 174615 to 175215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,811 DEBUG Processing 690/730 atomic regions from SNP 206940 to 207540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,884 DEBUG Processing 671/746 atomic regions from SNP 201048 to 201648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,889 DEBUG Processing 160/664 atomic regions from SNP 47769 to 48369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,947 DEBUG Processing 584/702 atomic regions from SNP 174915 to 175515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,070 DEBUG Processing 691/730 atomic regions from SNP 207240 to 207840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,116 DEBUG Processing 161/664 atomic regions from SNP 48069 to 48669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,126 DEBUG Processing 672/746 atomic regions from SNP 201348 to 201948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,168 DEBUG Processing 585/702 atomic regions from SNP 175215 to 175815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,333 DEBUG Processing 692/730 atomic regions from SNP 207540 to 208140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,343 DEBUG Processing 162/664 atomic regions from SNP 48369 to 48969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,347 DEBUG Processing 673/746 atomic regions from SNP 201648 to 202248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,411 DEBUG Processing 586/702 atomic regions from SNP 175515 to 176115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,545 DEBUG Processing 163/664 atomic regions from SNP 48669 to 49269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,567 DEBUG Processing 674/746 atomic regions from SNP 201948 to 202548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,590 DEBUG Processing 693/730 atomic regions from SNP 207840 to 208440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,665 DEBUG Processing 587/702 atomic regions from SNP 175815 to 176415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,745 DEBUG Processing 164/664 atomic regions from SNP 48969 to 49569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,791 DEBUG Processing 675/746 atomic regions from SNP 202248 to 202848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,854 DEBUG Processing 694/730 atomic regions from SNP 208140 to 208740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,913 DEBUG Processing 588/702 atomic regions from SNP 176115 to 176715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,938 DEBUG Processing 165/664 atomic regions from SNP 49269 to 49869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,008 DEBUG Processing 676/746 atomic regions from SNP 202548 to 203148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,125 DEBUG Processing 695/730 atomic regions from SNP 208440 to 209040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,131 DEBUG Processing 166/664 atomic regions from SNP 49569 to 50169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,162 DEBUG Processing 589/702 atomic regions from SNP 176415 to 177015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,221 DEBUG Processing 677/746 atomic regions from SNP 202848 to 203448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,330 DEBUG Processing 167/664 atomic regions from SNP 49869 to 50469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,383 DEBUG Processing 696/730 atomic regions from SNP 208740 to 209340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,416 DEBUG Processing 590/702 atomic regions from SNP 176715 to 177315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,436 DEBUG Processing 678/746 atomic regions from SNP 203148 to 203748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,530 DEBUG Processing 168/664 atomic regions from SNP 50169 to 50769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,639 DEBUG Processing 697/730 atomic regions from SNP 209040 to 209640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,648 DEBUG Processing 679/746 atomic regions from SNP 203448 to 204048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,665 DEBUG Processing 591/702 atomic regions from SNP 177015 to 177615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,734 DEBUG Processing 169/664 atomic regions from SNP 50469 to 51069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,869 DEBUG Processing 680/746 atomic regions from SNP 203748 to 204348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,892 DEBUG Processing 698/730 atomic regions from SNP 209340 to 209940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,915 DEBUG Processing 592/702 atomic regions from SNP 177315 to 177915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,940 DEBUG Processing 170/664 atomic regions from SNP 50769 to 51369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,085 DEBUG Processing 681/746 atomic regions from SNP 204048 to 204648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,144 DEBUG Processing 171/664 atomic regions from SNP 51069 to 51669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,147 DEBUG Processing 699/730 atomic regions from SNP 209640 to 210240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,169 DEBUG Processing 593/702 atomic regions from SNP 177615 to 178215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,300 DEBUG Processing 682/746 atomic regions from SNP 204348 to 204948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,347 DEBUG Processing 172/664 atomic regions from SNP 51369 to 51969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,393 DEBUG Processing 700/730 atomic regions from SNP 209940 to 210540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,418 DEBUG Processing 594/702 atomic regions from SNP 177915 to 178515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,519 DEBUG Processing 683/746 atomic regions from SNP 204648 to 205248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,551 DEBUG Processing 173/664 atomic regions from SNP 51669 to 52269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,627 DEBUG Processing 701/730 atomic regions from SNP 210240 to 210840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,665 DEBUG Processing 595/702 atomic regions from SNP 178215 to 178815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,736 DEBUG Processing 684/746 atomic regions from SNP 204948 to 205548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,755 DEBUG Processing 174/664 atomic regions from SNP 51969 to 52569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,854 DEBUG Processing 702/730 atomic regions from SNP 210540 to 211140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,917 DEBUG Processing 596/702 atomic regions from SNP 178515 to 179115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,954 DEBUG Processing 685/746 atomic regions from SNP 205248 to 205848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,963 DEBUG Processing 175/664 atomic regions from SNP 52269 to 52869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,079 DEBUG Processing 703/730 atomic regions from SNP 210840 to 211440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,156 DEBUG Processing 597/702 atomic regions from SNP 178815 to 179415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,176 DEBUG Processing 176/664 atomic regions from SNP 52569 to 53169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,177 DEBUG Processing 686/746 atomic regions from SNP 205548 to 206148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,301 DEBUG Processing 704/730 atomic regions from SNP 211140 to 211740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,379 DEBUG Processing 177/664 atomic regions from SNP 52869 to 53469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,385 DEBUG Processing 598/702 atomic regions from SNP 179115 to 179715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,397 DEBUG Processing 687/746 atomic regions from SNP 205848 to 206448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,547 DEBUG Processing 705/730 atomic regions from SNP 211440 to 212040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,581 DEBUG Processing 178/664 atomic regions from SNP 53169 to 53769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,618 DEBUG Processing 688/746 atomic regions from SNP 206148 to 206748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,629 DEBUG Processing 599/702 atomic regions from SNP 179415 to 180015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,776 DEBUG Processing 706/730 atomic regions from SNP 211740 to 212340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,782 DEBUG Processing 179/664 atomic regions from SNP 53469 to 54069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,842 DEBUG Processing 689/746 atomic regions from SNP 206448 to 207048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,866 DEBUG Processing 600/702 atomic regions from SNP 179715 to 180315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,981 DEBUG Processing 180/664 atomic regions from SNP 53769 to 54369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,002 DEBUG Processing 707/730 atomic regions from SNP 212040 to 212640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,064 DEBUG Processing 690/746 atomic regions from SNP 206748 to 207348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,091 DEBUG Processing 601/702 atomic regions from SNP 180015 to 180615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,178 DEBUG Processing 181/664 atomic regions from SNP 54069 to 54669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,230 DEBUG Processing 708/730 atomic regions from SNP 212340 to 212940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,284 DEBUG Processing 691/746 atomic regions from SNP 207048 to 207648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,310 DEBUG Processing 602/702 atomic regions from SNP 180315 to 180915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,372 DEBUG Processing 182/664 atomic regions from SNP 54369 to 54969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,460 DEBUG Processing 709/730 atomic regions from SNP 212640 to 213240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,512 DEBUG Processing 692/746 atomic regions from SNP 207348 to 207948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,536 DEBUG Processing 603/702 atomic regions from SNP 180615 to 181215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,569 DEBUG Processing 183/664 atomic regions from SNP 54669 to 55269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,686 DEBUG Processing 710/730 atomic regions from SNP 212940 to 213540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,750 DEBUG Processing 693/746 atomic regions from SNP 207648 to 208248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,769 DEBUG Processing 604/702 atomic regions from SNP 180915 to 181515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,780 DEBUG Processing 184/664 atomic regions from SNP 54969 to 55569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,907 DEBUG Processing 711/730 atomic regions from SNP 213240 to 213840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,985 DEBUG Processing 694/746 atomic regions from SNP 207948 to 208548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,998 DEBUG Processing 185/664 atomic regions from SNP 55269 to 55869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,005 DEBUG Processing 605/702 atomic regions from SNP 181215 to 181815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,123 DEBUG Processing 712/730 atomic regions from SNP 213540 to 214140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,213 DEBUG Processing 186/664 atomic regions from SNP 55569 to 56169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,216 DEBUG Processing 695/746 atomic regions from SNP 208248 to 208848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,239 DEBUG Processing 606/702 atomic regions from SNP 181515 to 182115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,338 DEBUG Processing 713/730 atomic regions from SNP 213840 to 214440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,425 DEBUG Processing 187/664 atomic regions from SNP 55869 to 56469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,450 DEBUG Processing 696/746 atomic regions from SNP 208548 to 209148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,470 DEBUG Processing 607/702 atomic regions from SNP 181815 to 182415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,555 DEBUG Processing 714/730 atomic regions from SNP 214140 to 214740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,633 DEBUG Processing 188/664 atomic regions from SNP 56169 to 56769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,681 DEBUG Processing 697/746 atomic regions from SNP 208848 to 209448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,700 DEBUG Processing 608/702 atomic regions from SNP 182115 to 182715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,786 DEBUG Processing 715/730 atomic regions from SNP 214440 to 215040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,831 DEBUG Processing 189/664 atomic regions from SNP 56469 to 57069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,914 DEBUG Processing 698/746 atomic regions from SNP 209148 to 209748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,928 DEBUG Processing 609/702 atomic regions from SNP 182415 to 183015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,025 DEBUG Processing 190/664 atomic regions from SNP 56769 to 57369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,028 DEBUG Processing 716/730 atomic regions from SNP 214740 to 215340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,142 DEBUG Processing 699/746 atomic regions from SNP 209448 to 210048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,157 DEBUG Processing 610/702 atomic regions from SNP 182715 to 183315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,225 DEBUG Processing 191/664 atomic regions from SNP 57069 to 57669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,259 DEBUG Processing 717/730 atomic regions from SNP 215040 to 215640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,370 DEBUG Processing 700/746 atomic regions from SNP 209748 to 210348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,384 DEBUG Processing 611/702 atomic regions from SNP 183015 to 183615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,430 DEBUG Processing 192/664 atomic regions from SNP 57369 to 57969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,504 DEBUG Processing 718/730 atomic regions from SNP 215340 to 215940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,602 DEBUG Processing 701/746 atomic regions from SNP 210048 to 210648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,614 DEBUG Processing 612/702 atomic regions from SNP 183315 to 183915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,639 DEBUG Processing 193/664 atomic regions from SNP 57669 to 58269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,729 DEBUG Processing 719/730 atomic regions from SNP 215640 to 216240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,829 DEBUG Processing 702/746 atomic regions from SNP 210348 to 210948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,846 DEBUG Processing 613/702 atomic regions from SNP 183615 to 184215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,848 DEBUG Processing 194/664 atomic regions from SNP 57969 to 58569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,953 DEBUG Processing 720/730 atomic regions from SNP 215940 to 216540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,062 DEBUG Processing 195/664 atomic regions from SNP 58269 to 58869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,065 DEBUG Processing 703/746 atomic regions from SNP 210648 to 211248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,097 DEBUG Processing 614/702 atomic regions from SNP 183915 to 184515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,181 DEBUG Processing 721/730 atomic regions from SNP 216240 to 216840 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,273 DEBUG Processing 196/664 atomic regions from SNP 58569 to 59169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,301 DEBUG Processing 704/746 atomic regions from SNP 210948 to 211548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,333 DEBUG Processing 615/702 atomic regions from SNP 184215 to 184815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,412 DEBUG Processing 722/730 atomic regions from SNP 216540 to 217140 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,479 DEBUG Processing 197/664 atomic regions from SNP 58869 to 59469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,529 DEBUG Processing 705/746 atomic regions from SNP 211248 to 211848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,563 DEBUG Processing 616/702 atomic regions from SNP 184515 to 185115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,644 DEBUG Processing 723/730 atomic regions from SNP 216840 to 217440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,697 DEBUG Processing 198/664 atomic regions from SNP 59169 to 59769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,752 DEBUG Processing 706/746 atomic regions from SNP 211548 to 212148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,784 DEBUG Processing 617/702 atomic regions from SNP 184815 to 185415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,871 DEBUG Processing 724/730 atomic regions from SNP 217140 to 217740 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,920 DEBUG Processing 199/664 atomic regions from SNP 59469 to 60069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,977 DEBUG Processing 707/746 atomic regions from SNP 211848 to 212448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,004 DEBUG Processing 618/702 atomic regions from SNP 185115 to 185715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,099 DEBUG Processing 725/730 atomic regions from SNP 217440 to 218040 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,128 DEBUG Processing 200/664 atomic regions from SNP 59769 to 60369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,198 DEBUG Processing 708/746 atomic regions from SNP 212148 to 212748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,222 DEBUG Processing 619/702 atomic regions from SNP 185415 to 186015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,327 DEBUG Processing 726/730 atomic regions from SNP 217740 to 218340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,337 DEBUG Processing 201/664 atomic regions from SNP 60069 to 60669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,421 DEBUG Processing 709/746 atomic regions from SNP 212448 to 213048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,447 DEBUG Processing 620/702 atomic regions from SNP 185715 to 186315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,543 DEBUG Processing 202/664 atomic regions from SNP 60369 to 60969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,555 DEBUG Processing 727/730 atomic regions from SNP 218040 to 218640 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,650 DEBUG Processing 710/746 atomic regions from SNP 212748 to 213348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,677 DEBUG Processing 621/702 atomic regions from SNP 186015 to 186615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,754 DEBUG Processing 203/664 atomic regions from SNP 60669 to 61269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,791 DEBUG Processing 728/730 atomic regions from SNP 218340 to 218940 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,885 DEBUG Processing 711/746 atomic regions from SNP 213048 to 213648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,911 DEBUG Processing 622/702 atomic regions from SNP 186315 to 186915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,963 DEBUG Processing 204/664 atomic regions from SNP 60969 to 61569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,020 DEBUG Processing 729/730 atomic regions from SNP 218640 to 219240 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,117 DEBUG Processing 712/746 atomic regions from SNP 213348 to 213948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,141 DEBUG Processing 623/702 atomic regions from SNP 186615 to 187215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,171 DEBUG Processing 205/664 atomic regions from SNP 61269 to 61869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,250 DEBUG Processing 730/730 atomic regions from SNP 218940 to 219540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,350 DEBUG Processing 713/746 atomic regions from SNP 213648 to 214248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,366 DEBUG Processing 624/702 atomic regions from SNP 186915 to 187515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,376 DEBUG Processing 206/664 atomic regions from SNP 61569 to 62169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,393 DEBUG Unique SNPs positions in subchromosome 1: 219541 2025-01-31 09:51:06,583 DEBUG Processing 714/746 atomic regions from SNP 213948 to 214548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,595 DEBUG Processing 207/664 atomic regions from SNP 61869 to 62469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,605 DEBUG Processing 625/702 atomic regions from SNP 187215 to 187815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,805 DEBUG Processing 715/746 atomic regions from SNP 214248 to 214848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,817 DEBUG Processing 208/664 atomic regions from SNP 62169 to 62769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,844 DEBUG Processing 626/702 atomic regions from SNP 187515 to 188115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,034 DEBUG Processing 716/746 atomic regions from SNP 214548 to 215148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,041 DEBUG Processing 209/664 atomic regions from SNP 62469 to 63069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,081 DEBUG Processing 627/702 atomic regions from SNP 187815 to 188415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,259 DEBUG Processing 210/664 atomic regions from SNP 62769 to 63369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,269 DEBUG Processing 717/746 atomic regions from SNP 214848 to 215448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,318 DEBUG Processing 628/702 atomic regions from SNP 188115 to 188715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,475 DEBUG Processing 211/664 atomic regions from SNP 63069 to 63669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,502 DEBUG Processing 718/746 atomic regions from SNP 215148 to 215748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,567 DEBUG Processing 629/702 atomic regions from SNP 188415 to 189015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,691 DEBUG Processing 212/664 atomic regions from SNP 63369 to 63969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,736 DEBUG Processing 719/746 atomic regions from SNP 215448 to 216048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,789 DEBUG Processing 630/702 atomic regions from SNP 188715 to 189315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,902 DEBUG Processing 213/664 atomic regions from SNP 63669 to 64269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,963 DEBUG Processing 720/746 atomic regions from SNP 215748 to 216348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,011 DEBUG Processing 631/702 atomic regions from SNP 189015 to 189615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,113 DEBUG Processing 214/664 atomic regions from SNP 63969 to 64569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,195 DEBUG Processing 721/746 atomic regions from SNP 216048 to 216648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,260 DEBUG Processing 632/702 atomic regions from SNP 189315 to 189915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,314 DEBUG Processing 215/664 atomic regions from SNP 64269 to 64869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,423 DEBUG Processing 722/746 atomic regions from SNP 216348 to 216948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,495 DEBUG Processing 633/702 atomic regions from SNP 189615 to 190215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,522 DEBUG Processing 216/664 atomic regions from SNP 64569 to 65169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,652 DEBUG Processing 723/746 atomic regions from SNP 216648 to 217248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,718 DEBUG Processing 634/702 atomic regions from SNP 189915 to 190515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,730 DEBUG Processing 217/664 atomic regions from SNP 64869 to 65469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,883 DEBUG Processing 724/746 atomic regions from SNP 216948 to 217548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,946 DEBUG Processing 635/702 atomic regions from SNP 190215 to 190815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,949 DEBUG Processing 218/664 atomic regions from SNP 65169 to 65769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,116 DEBUG Processing 725/746 atomic regions from SNP 217248 to 217848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,173 DEBUG Processing 636/702 atomic regions from SNP 190515 to 191115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,177 DEBUG Processing 219/664 atomic regions from SNP 65469 to 66069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,355 DEBUG Processing 726/746 atomic regions from SNP 217548 to 218148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,402 DEBUG Processing 637/702 atomic regions from SNP 190815 to 191415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,409 DEBUG Processing 220/664 atomic regions from SNP 65769 to 66369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,620 DEBUG Processing 727/746 atomic regions from SNP 217848 to 218448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,630 DEBUG Processing 638/702 atomic regions from SNP 191115 to 191715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,640 DEBUG Processing 221/664 atomic regions from SNP 66069 to 66669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,858 DEBUG Processing 222/664 atomic regions from SNP 66369 to 66969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,859 DEBUG Processing 639/702 atomic regions from SNP 191415 to 192015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,891 DEBUG Processing 728/746 atomic regions from SNP 218148 to 218748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,072 DEBUG Processing 223/664 atomic regions from SNP 66669 to 67269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,087 DEBUG Processing 640/702 atomic regions from SNP 191715 to 192315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,157 DEBUG Processing 729/746 atomic regions from SNP 218448 to 219048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,277 DEBUG Processing 224/664 atomic regions from SNP 66969 to 67569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,314 DEBUG Processing 641/702 atomic regions from SNP 192015 to 192615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,412 DEBUG Processing 730/746 atomic regions from SNP 218748 to 219348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,482 DEBUG Processing 225/664 atomic regions from SNP 67269 to 67869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,537 DEBUG Processing 642/702 atomic regions from SNP 192315 to 192915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,664 DEBUG Processing 731/746 atomic regions from SNP 219048 to 219648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,690 DEBUG Processing 226/664 atomic regions from SNP 67569 to 68169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,762 DEBUG Processing 643/702 atomic regions from SNP 192615 to 193215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,897 DEBUG Processing 732/746 atomic regions from SNP 219348 to 219948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,902 DEBUG Processing 227/664 atomic regions from SNP 67869 to 68469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,994 DEBUG Processing 644/702 atomic regions from SNP 192915 to 193515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,110 DEBUG Processing 228/664 atomic regions from SNP 68169 to 68769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,132 DEBUG Processing 733/746 atomic regions from SNP 219648 to 220248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,246 DEBUG Processing 645/702 atomic regions from SNP 193215 to 193815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,314 DEBUG Processing 229/664 atomic regions from SNP 68469 to 69069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,391 DEBUG Processing 734/746 atomic regions from SNP 219948 to 220548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,467 DEBUG Processing 646/702 atomic regions from SNP 193515 to 194115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,519 DEBUG Processing 230/664 atomic regions from SNP 68769 to 69369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,524 DEBUG Segmenting atomic regions: 2025-01-31 09:51:11,617 DEBUG Processing 1/723 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,648 DEBUG Processing 735/746 atomic regions from SNP 220248 to 220848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,689 DEBUG Processing 647/702 atomic regions from SNP 193815 to 194415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,732 DEBUG Processing 231/664 atomic regions from SNP 69069 to 69669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,831 DEBUG Processing 2/723 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,910 DEBUG Processing 736/746 atomic regions from SNP 220548 to 221148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,920 DEBUG Processing 648/702 atomic regions from SNP 194115 to 194715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,946 DEBUG Processing 232/664 atomic regions from SNP 69369 to 69969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,039 DEBUG Processing 3/723 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,152 DEBUG Processing 649/702 atomic regions from SNP 194415 to 195015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,164 DEBUG Processing 233/664 atomic regions from SNP 69669 to 70269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,180 DEBUG Processing 737/746 atomic regions from SNP 220848 to 221448 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,250 DEBUG Processing 4/723 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,378 DEBUG Processing 234/664 atomic regions from SNP 69969 to 70569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,383 DEBUG Processing 650/702 atomic regions from SNP 194715 to 195315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,451 DEBUG Processing 738/746 atomic regions from SNP 221148 to 221748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,474 DEBUG Processing 5/723 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,584 DEBUG Processing 235/664 atomic regions from SNP 70269 to 70869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,608 DEBUG Processing 651/702 atomic regions from SNP 195015 to 195615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,699 DEBUG Processing 6/723 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,720 DEBUG Processing 739/746 atomic regions from SNP 221448 to 222048 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,783 DEBUG Processing 236/664 atomic regions from SNP 70569 to 71169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,827 DEBUG Processing 652/702 atomic regions from SNP 195315 to 195915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,919 DEBUG Processing 7/723 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,951 DEBUG Processing 740/746 atomic regions from SNP 221748 to 222348 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,985 DEBUG Processing 237/664 atomic regions from SNP 70869 to 71469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,042 DEBUG Processing 653/702 atomic regions from SNP 195615 to 196215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,138 DEBUG Processing 8/723 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,181 DEBUG Processing 741/746 atomic regions from SNP 222048 to 222648 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,193 DEBUG Processing 238/664 atomic regions from SNP 71169 to 71769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,259 DEBUG Processing 654/702 atomic regions from SNP 195915 to 196515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,355 DEBUG Processing 9/723 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,405 DEBUG Processing 239/664 atomic regions from SNP 71469 to 72069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,412 DEBUG Processing 742/746 atomic regions from SNP 222348 to 222948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,481 DEBUG Processing 655/702 atomic regions from SNP 196215 to 196815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,570 DEBUG Processing 10/723 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,643 DEBUG Processing 743/746 atomic regions from SNP 222648 to 223248 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,651 DEBUG Processing 240/664 atomic regions from SNP 71769 to 72369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,707 DEBUG Processing 656/702 atomic regions from SNP 196515 to 197115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,779 DEBUG Processing 11/723 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,877 DEBUG Processing 744/746 atomic regions from SNP 222948 to 223548 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,899 DEBUG Processing 241/664 atomic regions from SNP 72069 to 72669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,934 DEBUG Processing 657/702 atomic regions from SNP 196815 to 197415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,993 DEBUG Processing 12/723 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,106 DEBUG Processing 745/746 atomic regions from SNP 223248 to 223848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,135 DEBUG Processing 242/664 atomic regions from SNP 72369 to 72969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,161 DEBUG Processing 658/702 atomic regions from SNP 197115 to 197715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,208 DEBUG Processing 13/723 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,330 DEBUG Processing 746/746 atomic regions from SNP 223548 to 224148 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,339 DEBUG Processing 243/664 atomic regions from SNP 72669 to 73269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,384 DEBUG Processing 659/702 atomic regions from SNP 197415 to 198015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,429 DEBUG Processing 14/723 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,466 DEBUG Unique SNPs positions in subchromosome 1: 224149 2025-01-31 09:51:14,544 DEBUG Processing 244/664 atomic regions from SNP 72969 to 73569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,605 DEBUG Processing 660/702 atomic regions from SNP 197715 to 198315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,640 DEBUG Processing 15/723 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,745 DEBUG Processing 245/664 atomic regions from SNP 73269 to 73869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,820 DEBUG Processing 661/702 atomic regions from SNP 198015 to 198615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,849 DEBUG Processing 16/723 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,982 DEBUG Processing 246/664 atomic regions from SNP 73569 to 74169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,042 DEBUG Processing 662/702 atomic regions from SNP 198315 to 198915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,060 DEBUG Processing 17/723 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,223 DEBUG Processing 247/664 atomic regions from SNP 73869 to 74469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,265 DEBUG Processing 663/702 atomic regions from SNP 198615 to 199215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,276 DEBUG Processing 18/723 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,465 DEBUG Processing 248/664 atomic regions from SNP 74169 to 74769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,491 DEBUG Processing 664/702 atomic regions from SNP 198915 to 199515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,495 DEBUG Processing 19/723 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,688 DEBUG Processing 249/664 atomic regions from SNP 74469 to 75069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,707 DEBUG Processing 20/723 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,712 DEBUG Processing 665/702 atomic regions from SNP 199215 to 199815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,892 DEBUG Processing 250/664 atomic regions from SNP 74769 to 75369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,920 DEBUG Processing 21/723 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,933 DEBUG Processing 666/702 atomic regions from SNP 199515 to 200115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,104 DEBUG Processing 251/664 atomic regions from SNP 75069 to 75669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,141 DEBUG Processing 22/723 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,160 DEBUG Processing 667/702 atomic regions from SNP 199815 to 200415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,311 DEBUG Processing 252/664 atomic regions from SNP 75369 to 75969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,360 DEBUG Processing 23/723 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,382 DEBUG Processing 668/702 atomic regions from SNP 200115 to 200715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,528 DEBUG Processing 253/664 atomic regions from SNP 75669 to 76269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,574 DEBUG Processing 24/723 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,612 DEBUG Processing 669/702 atomic regions from SNP 200415 to 201015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,729 DEBUG Processing 254/664 atomic regions from SNP 75969 to 76569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,787 DEBUG Processing 25/723 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,835 DEBUG Processing 670/702 atomic regions from SNP 200715 to 201315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,934 DEBUG Processing 255/664 atomic regions from SNP 76269 to 76869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,001 DEBUG Processing 26/723 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,064 DEBUG Processing 671/702 atomic regions from SNP 201015 to 201615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,158 DEBUG Processing 256/664 atomic regions from SNP 76569 to 77169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,215 DEBUG Processing 27/723 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,306 DEBUG Processing 672/702 atomic regions from SNP 201315 to 201915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,399 DEBUG Processing 257/664 atomic regions from SNP 76869 to 77469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,445 DEBUG Processing 28/723 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,528 DEBUG Processing 673/702 atomic regions from SNP 201615 to 202215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,652 DEBUG Processing 258/664 atomic regions from SNP 77169 to 77769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,670 DEBUG Processing 29/723 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,751 DEBUG Processing 674/702 atomic regions from SNP 201915 to 202515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,894 DEBUG Processing 30/723 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,902 DEBUG Processing 259/664 atomic regions from SNP 77469 to 78069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,975 DEBUG Processing 675/702 atomic regions from SNP 202215 to 202815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,116 DEBUG Processing 31/723 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,147 DEBUG Processing 260/664 atomic regions from SNP 77769 to 78369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,215 DEBUG Processing 676/702 atomic regions from SNP 202515 to 203115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,334 DEBUG Processing 32/723 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,389 DEBUG Processing 261/664 atomic regions from SNP 78069 to 78669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,467 DEBUG Processing 677/702 atomic regions from SNP 202815 to 203415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,550 DEBUG Processing 33/723 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,600 DEBUG Processing 262/664 atomic regions from SNP 78369 to 78969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,616 DEBUG Subchromosome time: 203.33191309997346, subchromosome SNPs: 224149 2025-01-31 09:51:18,616 DEBUG Estimated BADs: [1.36, 0.68, 1.36, 2.72, 1.36, 0.27, 0.68, 2.72, 0.34, 1.36, 2.72, 13.59, 1.36, 0.34, 0.68, 1.36, 0.68, 6.80, 2.72, 0.68] SNP counts: [50226, 11092, 3336, 6291, 6278, 4801, 13496, 10866, 2662, 17391, 7314, 3860, 34126, 6581, 21626, 12894, 4838, 3593, 951, 1927] SNP IDs counts: [50226, 11092, 3336, 6291, 6278, 4801, 13496, 10866, 2662, 17391, 7314, 3860, 34126, 6581, 21626, 12894, 4838, 3593, 951, 1927] Critical gap: 618552bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 31.79Mbp, 38.24Mbp, 40.12Mbp, 43.48Mbp, 46.98Mbp, 49.98Mbp, 58.30Mbp, 64.13Mbp, 65.81Mbp, 75.56Mbp, 79.64Mbp, 81.66Mbp, 100.91Mbp, 104.91Mbp, 117.02Mbp, 124.15Mbp, 126.89Mbp, 128.79Mbp, 129.38Mbp, 130.69Mbp] 2025-01-31 09:51:18,616 DEBUG chr10 time: 203.3323750999989 s 2025-01-31 09:51:18,732 DEBUG Processing 678/702 atomic regions from SNP 203115 to 203715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,752 DEBUG chr10: Fitting background model for 20 segments 2025-01-31 09:51:18,769 DEBUG Processing 34/723 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,832 DEBUG Processing 263/664 atomic regions from SNP 78669 to 79269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,992 DEBUG Processing 35/723 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,001 DEBUG Processing 679/702 atomic regions from SNP 203415 to 204015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,081 DEBUG Processing 264/664 atomic regions from SNP 78969 to 79569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,212 DEBUG Processing 36/723 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,263 DEBUG Processing 680/702 atomic regions from SNP 203715 to 204315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,333 DEBUG Processing 265/664 atomic regions from SNP 79269 to 79869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,428 DEBUG Processing 37/723 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,505 DEBUG Subchromosome time: 202.07275118899997, subchromosome SNPs: 219541 2025-01-31 09:51:19,505 DEBUG Estimated BADs: [3.29, 0.55, 1.65, 0.33, 1.65, 0.55, 1.65, 0.33, 0.82, 13.17, 4.94, 1.65, 8.23, 1.65, 3.29, 0.33, 0.82, 4.94, 1.65, 4.94, 1.65, 3.29, 9.88, 3.29, 1.65] SNP counts: [2716, 8202, 32220, 1801, 11733, 11147, 11400, 5406, 27696, 2163, 2560, 19192, 2939, 16315, 4736, 9899, 3975, 5038, 6704, 1700, 8900, 4649, 8646, 4869, 4935] SNP IDs counts: [2716, 8202, 32220, 1801, 11733, 11147, 11400, 5406, 27696, 2163, 2560, 19192, 2939, 16315, 4736, 9899, 3975, 5038, 6704, 1700, 8900, 4649, 8646, 4869, 4935] Critical gap: 618798bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.68Mbp, 9.60Mbp, 29.20Mbp, 30.33Mbp, 36.84Mbp, 43.52Mbp, 49.85Mbp, 53.11Mbp, 69.79Mbp, 70.91Mbp, 72.49Mbp, 83.57Mbp, 85.09Mbp, 93.94Mbp, 96.51Mbp, 102.36Mbp, 104.53Mbp, 107.29Mbp, 110.84Mbp, 111.74Mbp, 116.87Mbp, 119.34Mbp, 123.97Mbp, 126.56Mbp, 129.40Mbp] 2025-01-31 09:51:19,505 DEBUG chr8 time: 202.07337866001762 s 2025-01-31 09:51:19,527 DEBUG Processing 681/702 atomic regions from SNP 204015 to 204615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,564 DEBUG Processing 266/664 atomic regions from SNP 79569 to 80169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,639 DEBUG chr8: Fitting background model for 25 segments 2025-01-31 09:51:19,646 DEBUG Processing 38/723 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,779 DEBUG Processing 267/664 atomic regions from SNP 79869 to 80469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,782 DEBUG Processing 682/702 atomic regions from SNP 204315 to 204915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,867 DEBUG Processing 39/723 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,995 DEBUG Processing 268/664 atomic regions from SNP 80169 to 80769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,028 DEBUG Processing 683/702 atomic regions from SNP 204615 to 205215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,098 DEBUG Processing 40/723 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,204 DEBUG Processing 269/664 atomic regions from SNP 80469 to 81069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,282 DEBUG Processing 684/702 atomic regions from SNP 204915 to 205515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,324 DEBUG Processing 41/723 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,438 DEBUG Processing 270/664 atomic regions from SNP 80769 to 81369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,538 DEBUG Processing 685/702 atomic regions from SNP 205215 to 205815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,555 DEBUG Processing 42/723 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,669 DEBUG Processing 271/664 atomic regions from SNP 81069 to 81669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,782 DEBUG Processing 43/723 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,804 DEBUG Processing 686/702 atomic regions from SNP 205515 to 206115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,888 DEBUG Processing 272/664 atomic regions from SNP 81369 to 81969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,002 DEBUG Processing 44/723 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,052 DEBUG Processing 687/702 atomic regions from SNP 205815 to 206415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,097 DEBUG Processing 273/664 atomic regions from SNP 81669 to 82269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,229 DEBUG Processing 45/723 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,291 DEBUG Processing 688/702 atomic regions from SNP 206115 to 206715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,313 DEBUG Processing 274/664 atomic regions from SNP 81969 to 82569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,459 DEBUG Processing 46/723 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,528 DEBUG Processing 689/702 atomic regions from SNP 206415 to 207015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,533 DEBUG Processing 275/664 atomic regions from SNP 82269 to 82869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,692 DEBUG Processing 47/723 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,760 DEBUG Processing 276/664 atomic regions from SNP 82569 to 83169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,765 DEBUG Processing 690/702 atomic regions from SNP 206715 to 207315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,925 DEBUG Processing 48/723 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,990 DEBUG Processing 277/664 atomic regions from SNP 82869 to 83469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,999 DEBUG Processing 691/702 atomic regions from SNP 207015 to 207615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,151 DEBUG Processing 49/723 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,233 DEBUG Processing 278/664 atomic regions from SNP 83169 to 83769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,237 DEBUG Processing 692/702 atomic regions from SNP 207315 to 207915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,374 DEBUG Processing 50/723 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,464 DEBUG Processing 279/664 atomic regions from SNP 83469 to 84069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,488 DEBUG Processing 693/702 atomic regions from SNP 207615 to 208215 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,592 DEBUG Processing 51/723 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,691 DEBUG Processing 280/664 atomic regions from SNP 83769 to 84369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,736 DEBUG Processing 694/702 atomic regions from SNP 207915 to 208515 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,807 DEBUG Processing 52/723 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,907 DEBUG Processing 281/664 atomic regions from SNP 84069 to 84669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,979 DEBUG Processing 695/702 atomic regions from SNP 208215 to 208815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,028 DEBUG Processing 53/723 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,129 DEBUG Processing 282/664 atomic regions from SNP 84369 to 84969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,212 DEBUG Processing 696/702 atomic regions from SNP 208515 to 209115 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,255 DEBUG Processing 54/723 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,341 DEBUG Processing 283/664 atomic regions from SNP 84669 to 85269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,446 DEBUG Processing 697/702 atomic regions from SNP 208815 to 209415 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,483 DEBUG Processing 55/723 atomic regions from SNP 16254 to 16854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,561 DEBUG Processing 284/664 atomic regions from SNP 84969 to 85569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,679 DEBUG Processing 698/702 atomic regions from SNP 209115 to 209715 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,711 DEBUG Processing 56/723 atomic regions from SNP 16554 to 17154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,781 DEBUG Processing 285/664 atomic regions from SNP 85269 to 85869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,915 DEBUG Processing 699/702 atomic regions from SNP 209415 to 210015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,939 DEBUG Processing 57/723 atomic regions from SNP 16854 to 17454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,999 DEBUG Processing 286/664 atomic regions from SNP 85569 to 86169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,151 DEBUG Processing 700/702 atomic regions from SNP 209715 to 210315 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,166 DEBUG Processing 58/723 atomic regions from SNP 17154 to 17754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,217 DEBUG Processing 287/664 atomic regions from SNP 85869 to 86469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,391 DEBUG Processing 59/723 atomic regions from SNP 17454 to 18054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,394 DEBUG Processing 701/702 atomic regions from SNP 210015 to 210615 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,438 DEBUG Processing 288/664 atomic regions from SNP 86169 to 86769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,611 DEBUG Processing 60/723 atomic regions from SNP 17754 to 18354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,623 DEBUG Processing 702/702 atomic regions from SNP 210315 to 210915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,641 DEBUG Processing 289/664 atomic regions from SNP 86469 to 87069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,757 DEBUG Unique SNPs positions in subchromosome 3: 210916 2025-01-31 09:51:24,834 DEBUG Processing 61/723 atomic regions from SNP 18054 to 18654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,855 DEBUG Processing 290/664 atomic regions from SNP 86769 to 87369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,063 DEBUG Processing 62/723 atomic regions from SNP 18354 to 18954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,074 DEBUG Processing 291/664 atomic regions from SNP 87069 to 87669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,291 DEBUG Processing 63/723 atomic regions from SNP 18654 to 19254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,294 DEBUG Processing 292/664 atomic regions from SNP 87369 to 87969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,513 DEBUG Processing 64/723 atomic regions from SNP 18954 to 19554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,513 DEBUG Processing 293/664 atomic regions from SNP 87669 to 88269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,737 DEBUG Processing 294/664 atomic regions from SNP 87969 to 88569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,746 DEBUG Processing 65/723 atomic regions from SNP 19254 to 19854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,968 DEBUG Processing 295/664 atomic regions from SNP 88269 to 88869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,983 DEBUG Processing 66/723 atomic regions from SNP 19554 to 20154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,186 DEBUG Processing 296/664 atomic regions from SNP 88569 to 89169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,213 DEBUG Processing 67/723 atomic regions from SNP 19854 to 20454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,404 DEBUG Processing 297/664 atomic regions from SNP 88869 to 89469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,452 DEBUG Processing 68/723 atomic regions from SNP 20154 to 20754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,625 DEBUG Processing 298/664 atomic regions from SNP 89169 to 89769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,682 DEBUG Processing 69/723 atomic regions from SNP 20454 to 21054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,838 DEBUG Processing 299/664 atomic regions from SNP 89469 to 90069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,905 DEBUG Processing 70/723 atomic regions from SNP 20754 to 21354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,065 DEBUG Processing 300/664 atomic regions from SNP 89769 to 90369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,128 DEBUG Processing 71/723 atomic regions from SNP 21054 to 21654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,301 DEBUG Processing 301/664 atomic regions from SNP 90069 to 90669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,351 DEBUG Processing 72/723 atomic regions from SNP 21354 to 21954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,513 DEBUG Processing 302/664 atomic regions from SNP 90369 to 90969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,574 DEBUG Processing 73/723 atomic regions from SNP 21654 to 22254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,721 DEBUG Processing 303/664 atomic regions from SNP 90669 to 91269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,799 DEBUG Processing 74/723 atomic regions from SNP 21954 to 22554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,931 DEBUG Processing 304/664 atomic regions from SNP 90969 to 91569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,023 DEBUG Processing 75/723 atomic regions from SNP 22254 to 22854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,148 DEBUG Processing 305/664 atomic regions from SNP 91269 to 91869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,211 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:51:28,244 DEBUG Processing 76/723 atomic regions from SNP 22554 to 23154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,368 DEBUG Processing 306/664 atomic regions from SNP 91569 to 92169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,462 DEBUG Processing 77/723 atomic regions from SNP 22854 to 23454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,603 DEBUG Processing 307/664 atomic regions from SNP 91869 to 92469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,680 DEBUG Processing 78/723 atomic regions from SNP 23154 to 23754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,865 DEBUG Processing 308/664 atomic regions from SNP 92169 to 92769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,899 DEBUG Processing 79/723 atomic regions from SNP 23454 to 24054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,101 DEBUG Processing 309/664 atomic regions from SNP 92469 to 93069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,128 DEBUG Processing 80/723 atomic regions from SNP 23754 to 24354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,342 DEBUG Processing 310/664 atomic regions from SNP 92769 to 93369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,359 DEBUG Processing 81/723 atomic regions from SNP 24054 to 24654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,568 DEBUG Processing 311/664 atomic regions from SNP 93069 to 93669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,591 DEBUG Processing 82/723 atomic regions from SNP 24354 to 24954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,786 DEBUG Processing 312/664 atomic regions from SNP 93369 to 93969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,821 DEBUG Processing 83/723 atomic regions from SNP 24654 to 25254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,014 DEBUG Processing 313/664 atomic regions from SNP 93669 to 94269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,049 DEBUG Processing 84/723 atomic regions from SNP 24954 to 25554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,234 DEBUG Processing 314/664 atomic regions from SNP 93969 to 94569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,282 DEBUG Processing 85/723 atomic regions from SNP 25254 to 25854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,450 DEBUG Processing 315/664 atomic regions from SNP 94269 to 94869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,507 DEBUG Processing 86/723 atomic regions from SNP 25554 to 26154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,663 DEBUG Processing 316/664 atomic regions from SNP 94569 to 95169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,728 DEBUG Processing 87/723 atomic regions from SNP 25854 to 26454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,875 DEBUG Processing 317/664 atomic regions from SNP 94869 to 95469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,945 DEBUG Processing 88/723 atomic regions from SNP 26154 to 26754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,090 DEBUG Processing 318/664 atomic regions from SNP 95169 to 95769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,160 DEBUG Processing 89/723 atomic regions from SNP 26454 to 27054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,310 DEBUG Processing 319/664 atomic regions from SNP 95469 to 96069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,377 DEBUG Processing 90/723 atomic regions from SNP 26754 to 27354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,532 DEBUG Processing 320/664 atomic regions from SNP 95769 to 96369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,594 DEBUG Processing 91/723 atomic regions from SNP 27054 to 27654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,744 DEBUG Processing 321/664 atomic regions from SNP 96069 to 96669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,811 DEBUG Processing 92/723 atomic regions from SNP 27354 to 27954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,974 DEBUG Processing 322/664 atomic regions from SNP 96369 to 96969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,031 DEBUG Processing 93/723 atomic regions from SNP 27654 to 28254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,210 DEBUG Processing 323/664 atomic regions from SNP 96669 to 97269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,251 DEBUG Processing 94/723 atomic regions from SNP 27954 to 28554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,452 DEBUG Processing 324/664 atomic regions from SNP 96969 to 97569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,471 DEBUG Processing 95/723 atomic regions from SNP 28254 to 28854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,672 DEBUG Processing 325/664 atomic regions from SNP 97269 to 97869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,694 DEBUG Processing 96/723 atomic regions from SNP 28554 to 29154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,893 DEBUG Processing 326/664 atomic regions from SNP 97569 to 98169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,921 DEBUG Processing 97/723 atomic regions from SNP 28854 to 29454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,130 DEBUG Processing 327/664 atomic regions from SNP 97869 to 98469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,149 DEBUG Processing 98/723 atomic regions from SNP 29154 to 29754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,350 DEBUG Processing 328/664 atomic regions from SNP 98169 to 98769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,385 DEBUG Processing 99/723 atomic regions from SNP 29454 to 30054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,566 DEBUG Processing 329/664 atomic regions from SNP 98469 to 99069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,639 DEBUG Processing 100/723 atomic regions from SNP 29754 to 30354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,781 DEBUG Processing 330/664 atomic regions from SNP 98769 to 99369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,900 DEBUG Processing 101/723 atomic regions from SNP 30054 to 30654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,992 DEBUG Processing 331/664 atomic regions from SNP 99069 to 99669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,160 DEBUG Processing 102/723 atomic regions from SNP 30354 to 30954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,206 DEBUG Processing 332/664 atomic regions from SNP 99369 to 99969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,424 DEBUG Processing 333/664 atomic regions from SNP 99669 to 100269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,430 DEBUG Processing 103/723 atomic regions from SNP 30654 to 31254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,653 DEBUG Processing 334/664 atomic regions from SNP 99969 to 100569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,690 DEBUG Processing 104/723 atomic regions from SNP 30954 to 31554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,882 DEBUG Processing 335/664 atomic regions from SNP 100269 to 100869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,942 DEBUG Processing 105/723 atomic regions from SNP 31254 to 31854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,101 DEBUG Processing 336/664 atomic regions from SNP 100569 to 101169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,194 DEBUG Processing 106/723 atomic regions from SNP 31554 to 32154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,328 DEBUG Processing 337/664 atomic regions from SNP 100869 to 101469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,445 DEBUG Processing 107/723 atomic regions from SNP 31854 to 32454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,546 DEBUG Processing 338/664 atomic regions from SNP 101169 to 101769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,690 DEBUG Processing 108/723 atomic regions from SNP 32154 to 32754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,759 DEBUG Processing 339/664 atomic regions from SNP 101469 to 102069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,928 DEBUG Processing 109/723 atomic regions from SNP 32454 to 33054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,971 DEBUG Processing 340/664 atomic regions from SNP 101769 to 102369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,161 DEBUG Processing 110/723 atomic regions from SNP 32754 to 33354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,188 DEBUG Processing 341/664 atomic regions from SNP 102069 to 102669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,391 DEBUG Processing 342/664 atomic regions from SNP 102369 to 102969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,393 DEBUG Processing 111/723 atomic regions from SNP 33054 to 33654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,595 DEBUG Processing 343/664 atomic regions from SNP 102669 to 103269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,606 DEBUG Processing 112/723 atomic regions from SNP 33354 to 33954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,799 DEBUG Processing 344/664 atomic regions from SNP 102969 to 103569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,816 DEBUG Processing 113/723 atomic regions from SNP 33654 to 34254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,008 DEBUG Processing 345/664 atomic regions from SNP 103269 to 103869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,031 DEBUG Processing 114/723 atomic regions from SNP 33954 to 34554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,218 DEBUG Processing 346/664 atomic regions from SNP 103569 to 104169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,246 DEBUG Processing 115/723 atomic regions from SNP 34254 to 34854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,427 DEBUG Processing 347/664 atomic regions from SNP 103869 to 104469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,463 DEBUG Processing 116/723 atomic regions from SNP 34554 to 35154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,654 DEBUG Processing 348/664 atomic regions from SNP 104169 to 104769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,680 DEBUG Processing 117/723 atomic regions from SNP 34854 to 35454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,870 DEBUG Processing 349/664 atomic regions from SNP 104469 to 105069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,900 DEBUG Processing 118/723 atomic regions from SNP 35154 to 35754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,083 DEBUG Processing 350/664 atomic regions from SNP 104769 to 105369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,118 DEBUG Processing 119/723 atomic regions from SNP 35454 to 36054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,311 DEBUG Processing 351/664 atomic regions from SNP 105069 to 105669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,335 DEBUG Processing 120/723 atomic regions from SNP 35754 to 36354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,526 DEBUG Processing 352/664 atomic regions from SNP 105369 to 105969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,555 DEBUG Processing 121/723 atomic regions from SNP 36054 to 36654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,773 DEBUG Processing 353/664 atomic regions from SNP 105669 to 106269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,774 DEBUG Processing 122/723 atomic regions from SNP 36354 to 36954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,973 DEBUG Subchromosome time: 202.10012281895615, subchromosome SNPs: 210916 2025-01-31 09:51:38,973 DEBUG Estimated BADs: [1.50, 7.49, 0.50, 3.00, 0.50, 7.49, 0.50, 5.99, 0.75, 7.49, 0.00, 0.50, 5.99, 0.75, 4.49, 0.50, 1.50, 0.75, 3.00, 10.48, 3.00, 0.37, 1.50, 0.75, 0.30, 1.50, 0.37, 1.50, 0.75, 1.50, 0.37, 1.50, 4.49, 1.50, 0.25, 1.50, 0.75, 0.25, 1.50, 3.00, 0.75, 1.50, 5.99, 1.50, 7.49, 3.00] SNP counts: [1913, 1205, 886, 2526, 3975, 316, 3246, 2297, 2477, 2010, 22, 1505, 2993, 1786, 7026, 2098, 8414, 7785, 1656, 1669, 2777, 1990, 2757, 3547, 5400, 2098, 11153, 9333, 8095, 5319, 2107, 2758, 3301, 7135, 6002, 3600, 4524, 3568, 4899, 9506, 7805, 32818, 3813, 23225, 1649, 6805] SNP IDs counts: [1913, 1205, 886, 2526, 3975, 316, 3246, 2297, 2477, 2010, 22, 1505, 2993, 1786, 7026, 2098, 8414, 7785, 1656, 1669, 2777, 1990, 2757, 3547, 5400, 2098, 11153, 9333, 8095, 5319, 2107, 2758, 3301, 7135, 6002, 3600, 4524, 3568, 4899, 9506, 7805, 32818, 3813, 23225, 1649, 6805] Critical gap: 667360bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.44Mbp, 5.10Mbp, 5.74Mbp, 7.30Mbp, 12.90Mbp, 13.06Mbp, 15.89Mbp, 17.10Mbp, 19.00Mbp, 20.10Mbp[0.67Mbp], 20.98Mbp[1.79Mbp], 24.29Mbp, 25.93Mbp, 27.15Mbp, 31.00Mbp, 33.74Mbp, 38.27Mbp, 43.91Mbp, 44.81Mbp, 45.68Mbp, 47.15Mbp, 48.46Mbp, 49.96Mbp, 52.09Mbp, 55.40Mbp, 56.65Mbp, 63.88Mbp, 68.98Mbp, 73.52Mbp, 76.52Mbp, 77.74Mbp, 79.24Mbp, 80.98Mbp, 84.90Mbp, 88.55Mbp, 90.60Mbp, 93.17Mbp, 95.35Mbp, 98.06Mbp, 103.13Mbp, 108.38Mbp, 126.20Mbp, 128.23Mbp, 140.80Mbp, 141.66Mbp, 145.44Mbp] 2025-01-31 09:51:38,973 DEBUG chr7 time: 202.10068645305 s 2025-01-31 09:51:38,991 DEBUG Processing 123/723 atomic regions from SNP 36654 to 37254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,017 DEBUG Processing 354/664 atomic regions from SNP 105969 to 106569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,123 DEBUG chr7: Fitting background model for 45 segments 2025-01-31 09:51:39,213 DEBUG Processing 124/723 atomic regions from SNP 36954 to 37554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,230 DEBUG Processing 355/664 atomic regions from SNP 106269 to 106869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,435 DEBUG Processing 125/723 atomic regions from SNP 37254 to 37854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,446 DEBUG Processing 356/664 atomic regions from SNP 106569 to 107169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,660 DEBUG Processing 126/723 atomic regions from SNP 37554 to 38154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,661 DEBUG Processing 357/664 atomic regions from SNP 106869 to 107469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,877 DEBUG Processing 358/664 atomic regions from SNP 107169 to 107769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,882 DEBUG Processing 127/723 atomic regions from SNP 37854 to 38454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,092 DEBUG Processing 359/664 atomic regions from SNP 107469 to 108069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,102 DEBUG Processing 128/723 atomic regions from SNP 38154 to 38754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,300 DEBUG Processing 360/664 atomic regions from SNP 107769 to 108369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,321 DEBUG Processing 129/723 atomic regions from SNP 38454 to 39054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,511 DEBUG Processing 361/664 atomic regions from SNP 108069 to 108669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,535 DEBUG Processing 130/723 atomic regions from SNP 38754 to 39354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,724 DEBUG Processing 362/664 atomic regions from SNP 108369 to 108969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,753 DEBUG Processing 131/723 atomic regions from SNP 39054 to 39654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,937 DEBUG Processing 363/664 atomic regions from SNP 108669 to 109269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,981 DEBUG Processing 132/723 atomic regions from SNP 39354 to 39954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,162 DEBUG Processing 364/664 atomic regions from SNP 108969 to 109569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,214 DEBUG Processing 133/723 atomic regions from SNP 39654 to 40254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,368 DEBUG Processing 365/664 atomic regions from SNP 109269 to 109869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,435 DEBUG Processing 134/723 atomic regions from SNP 39954 to 40554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,577 DEBUG Processing 366/664 atomic regions from SNP 109569 to 110169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,657 DEBUG Processing 135/723 atomic regions from SNP 40254 to 40854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,786 DEBUG Processing 367/664 atomic regions from SNP 109869 to 110469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,875 DEBUG Processing 136/723 atomic regions from SNP 40554 to 41154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,999 DEBUG Processing 368/664 atomic regions from SNP 110169 to 110769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,094 DEBUG Processing 137/723 atomic regions from SNP 40854 to 41454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,208 DEBUG Processing 369/664 atomic regions from SNP 110469 to 111069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,307 DEBUG Processing 138/723 atomic regions from SNP 41154 to 41754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,440 DEBUG Processing 370/664 atomic regions from SNP 110769 to 111369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,522 DEBUG Processing 139/723 atomic regions from SNP 41454 to 42054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,670 DEBUG Processing 371/664 atomic regions from SNP 111069 to 111669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,738 DEBUG Processing 140/723 atomic regions from SNP 41754 to 42354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,881 DEBUG Processing 372/664 atomic regions from SNP 111369 to 111969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,955 DEBUG Processing 141/723 atomic regions from SNP 42054 to 42654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,090 DEBUG Processing 373/664 atomic regions from SNP 111669 to 112269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,175 DEBUG Processing 142/723 atomic regions from SNP 42354 to 42954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,302 DEBUG Processing 374/664 atomic regions from SNP 111969 to 112569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,390 DEBUG Processing 143/723 atomic regions from SNP 42654 to 43254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,516 DEBUG Processing 375/664 atomic regions from SNP 112269 to 112869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,599 DEBUG Processing 144/723 atomic regions from SNP 42954 to 43554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,729 DEBUG Processing 376/664 atomic regions from SNP 112569 to 113169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,810 DEBUG Processing 145/723 atomic regions from SNP 43254 to 43854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,943 DEBUG Processing 377/664 atomic regions from SNP 112869 to 113469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,027 DEBUG Processing 146/723 atomic regions from SNP 43554 to 44154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,176 DEBUG Processing 378/664 atomic regions from SNP 113169 to 113769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,249 DEBUG Processing 147/723 atomic regions from SNP 43854 to 44454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,393 DEBUG Processing 379/664 atomic regions from SNP 113469 to 114069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,469 DEBUG Processing 148/723 atomic regions from SNP 44154 to 44754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,607 DEBUG Processing 380/664 atomic regions from SNP 113769 to 114369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,691 DEBUG Processing 149/723 atomic regions from SNP 44454 to 45054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,837 DEBUG Processing 381/664 atomic regions from SNP 114069 to 114669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,912 DEBUG Processing 150/723 atomic regions from SNP 44754 to 45354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,049 DEBUG Processing 382/664 atomic regions from SNP 114369 to 114969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,133 DEBUG Processing 151/723 atomic regions from SNP 45054 to 45654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,262 DEBUG Processing 383/664 atomic regions from SNP 114669 to 115269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,355 DEBUG Processing 152/723 atomic regions from SNP 45354 to 45954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,481 DEBUG Processing 384/664 atomic regions from SNP 114969 to 115569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,580 DEBUG Processing 153/723 atomic regions from SNP 45654 to 46254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,727 DEBUG Processing 385/664 atomic regions from SNP 115269 to 115869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,808 DEBUG Processing 154/723 atomic regions from SNP 45954 to 46554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,948 DEBUG Processing 386/664 atomic regions from SNP 115569 to 116169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,036 DEBUG Processing 155/723 atomic regions from SNP 46254 to 46854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,189 DEBUG Processing 387/664 atomic regions from SNP 115869 to 116469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,261 DEBUG Processing 156/723 atomic regions from SNP 46554 to 47154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,412 DEBUG Processing 388/664 atomic regions from SNP 116169 to 116769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,481 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:51:46,483 DEBUG chr11: Signal quantile: 0.983. signal threshold: 12. Best RMSEA: 0.012 2025-01-31 09:51:46,490 DEBUG Processing 157/723 atomic regions from SNP 46854 to 47454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,643 DEBUG Processing 389/664 atomic regions from SNP 116469 to 117069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,717 DEBUG Processing 158/723 atomic regions from SNP 47154 to 47754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,862 DEBUG Processing 390/664 atomic regions from SNP 116769 to 117369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,946 DEBUG Processing 159/723 atomic regions from SNP 47454 to 48054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,071 DEBUG Processing 391/664 atomic regions from SNP 117069 to 117669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,170 DEBUG Processing 160/723 atomic regions from SNP 47754 to 48354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,283 DEBUG Processing 392/664 atomic regions from SNP 117369 to 117969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,392 DEBUG Processing 161/723 atomic regions from SNP 48054 to 48654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,496 DEBUG Processing 393/664 atomic regions from SNP 117669 to 118269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,614 DEBUG Processing 162/723 atomic regions from SNP 48354 to 48954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,713 DEBUG Processing 394/664 atomic regions from SNP 117969 to 118569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,860 DEBUG Processing 163/723 atomic regions from SNP 48654 to 49254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,928 DEBUG Processing 395/664 atomic regions from SNP 118269 to 118869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,109 DEBUG Processing 164/723 atomic regions from SNP 48954 to 49554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,145 DEBUG Processing 396/664 atomic regions from SNP 118569 to 119169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,332 DEBUG Processing 165/723 atomic regions from SNP 49254 to 49854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,356 DEBUG Processing 397/664 atomic regions from SNP 118869 to 119469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,554 DEBUG Processing 166/723 atomic regions from SNP 49554 to 50154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,568 DEBUG Processing 398/664 atomic regions from SNP 119169 to 119769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,655 DEBUG chr11 total SNP count: 211641 2025-01-31 09:51:48,655 DEBUG chr11 length: 122082543 2025-01-31 09:51:48,655 DEBUG ----------------------------------------- 2025-01-31 09:51:48,655 INFO Processing SNPs in chr11 2025-01-31 09:51:48,776 DEBUG Processing 167/723 atomic regions from SNP 49854 to 50454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,780 DEBUG Processing 399/664 atomic regions from SNP 119469 to 120069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,868 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 211641)] 2025-01-31 09:51:48,990 DEBUG Processing 400/664 atomic regions from SNP 119769 to 120369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,993 DEBUG Processing 168/723 atomic regions from SNP 50154 to 50754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,012 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:49,197 DEBUG Processing 401/664 atomic regions from SNP 120069 to 120669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,210 DEBUG Processing 169/723 atomic regions from SNP 50454 to 51054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,405 DEBUG Processing 402/664 atomic regions from SNP 120369 to 120969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,426 DEBUG Processing 170/723 atomic regions from SNP 50754 to 51354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,618 DEBUG Processing 403/664 atomic regions from SNP 120669 to 121269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,652 DEBUG Processing 171/723 atomic regions from SNP 51054 to 51654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,832 DEBUG Processing 404/664 atomic regions from SNP 120969 to 121569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,874 DEBUG Processing 172/723 atomic regions from SNP 51354 to 51954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,045 DEBUG Processing 405/664 atomic regions from SNP 121269 to 121869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,097 DEBUG Processing 173/723 atomic regions from SNP 51654 to 52254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,277 DEBUG Processing 406/664 atomic regions from SNP 121569 to 122169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,314 DEBUG Processing 174/723 atomic regions from SNP 51954 to 52554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,519 DEBUG Processing 407/664 atomic regions from SNP 121869 to 122469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,532 DEBUG Processing 175/723 atomic regions from SNP 52254 to 52854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,754 DEBUG Processing 176/723 atomic regions from SNP 52554 to 53154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,757 DEBUG Processing 408/664 atomic regions from SNP 122169 to 122769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,970 DEBUG Processing 409/664 atomic regions from SNP 122469 to 123069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,973 DEBUG Processing 177/723 atomic regions from SNP 52854 to 53454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,185 DEBUG Processing 410/664 atomic regions from SNP 122769 to 123369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,197 DEBUG Processing 178/723 atomic regions from SNP 53154 to 53754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,403 DEBUG Processing 411/664 atomic regions from SNP 123069 to 123669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,423 DEBUG Processing 179/723 atomic regions from SNP 53454 to 54054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,620 DEBUG Processing 412/664 atomic regions from SNP 123369 to 123969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,645 DEBUG Processing 180/723 atomic regions from SNP 53754 to 54354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,836 DEBUG Processing 413/664 atomic regions from SNP 123669 to 124269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,866 DEBUG Processing 181/723 atomic regions from SNP 54054 to 54654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,050 DEBUG Processing 414/664 atomic regions from SNP 123969 to 124569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,087 DEBUG Processing 182/723 atomic regions from SNP 54354 to 54954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,263 DEBUG Processing 415/664 atomic regions from SNP 124269 to 124869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,305 DEBUG Processing 183/723 atomic regions from SNP 54654 to 55254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,477 DEBUG Processing 416/664 atomic regions from SNP 124569 to 125169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,526 DEBUG Processing 184/723 atomic regions from SNP 54954 to 55554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,696 DEBUG Processing 417/664 atomic regions from SNP 124869 to 125469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,755 DEBUG Processing 185/723 atomic regions from SNP 55254 to 55854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,915 DEBUG Processing 418/664 atomic regions from SNP 125169 to 125769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,976 DEBUG Processing 186/723 atomic regions from SNP 55554 to 56154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,132 DEBUG Processing 419/664 atomic regions from SNP 125469 to 126069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,223 DEBUG Processing 187/723 atomic regions from SNP 55854 to 56454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,345 DEBUG Processing 420/664 atomic regions from SNP 125769 to 126369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,466 DEBUG Processing 188/723 atomic regions from SNP 56154 to 56754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,561 DEBUG Processing 421/664 atomic regions from SNP 126069 to 126669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,690 DEBUG Processing 189/723 atomic regions from SNP 56454 to 57054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,777 DEBUG Processing 422/664 atomic regions from SNP 126369 to 126969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,907 DEBUG Processing 190/723 atomic regions from SNP 56754 to 57354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,988 DEBUG Processing 423/664 atomic regions from SNP 126669 to 127269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,126 DEBUG Processing 191/723 atomic regions from SNP 57054 to 57654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,196 DEBUG Processing 424/664 atomic regions from SNP 126969 to 127569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,345 DEBUG Processing 192/723 atomic regions from SNP 57354 to 57954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,399 DEBUG Processing 425/664 atomic regions from SNP 127269 to 127869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,560 DEBUG Processing 193/723 atomic regions from SNP 57654 to 58254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,603 DEBUG Processing 426/664 atomic regions from SNP 127569 to 128169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,773 DEBUG Processing 194/723 atomic regions from SNP 57954 to 58554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,810 DEBUG Processing 427/664 atomic regions from SNP 127869 to 128469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,991 DEBUG Processing 195/723 atomic regions from SNP 58254 to 58854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,020 DEBUG Processing 428/664 atomic regions from SNP 128169 to 128769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,212 DEBUG Processing 196/723 atomic regions from SNP 58554 to 59154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,227 DEBUG Processing 429/664 atomic regions from SNP 128469 to 129069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,432 DEBUG Processing 197/723 atomic regions from SNP 58854 to 59454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,437 DEBUG Processing 430/664 atomic regions from SNP 128769 to 129369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,525 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:51:55,657 DEBUG Processing 431/664 atomic regions from SNP 129069 to 129669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,661 DEBUG Processing 198/723 atomic regions from SNP 59154 to 59754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,884 DEBUG Processing 432/664 atomic regions from SNP 129369 to 129969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,891 DEBUG Processing 199/723 atomic regions from SNP 59454 to 60054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,104 DEBUG Processing 433/664 atomic regions from SNP 129669 to 130269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,118 DEBUG Processing 200/723 atomic regions from SNP 59754 to 60354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,317 DEBUG Processing 434/664 atomic regions from SNP 129969 to 130569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,343 DEBUG Processing 201/723 atomic regions from SNP 60054 to 60654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,528 DEBUG Processing 435/664 atomic regions from SNP 130269 to 130869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,563 DEBUG Processing 202/723 atomic regions from SNP 60354 to 60954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,741 DEBUG Processing 436/664 atomic regions from SNP 130569 to 131169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,784 DEBUG Processing 203/723 atomic regions from SNP 60654 to 61254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,951 DEBUG Processing 437/664 atomic regions from SNP 130869 to 131469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,003 DEBUG Processing 204/723 atomic regions from SNP 60954 to 61554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,160 DEBUG Processing 438/664 atomic regions from SNP 131169 to 131769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,223 DEBUG Processing 205/723 atomic regions from SNP 61254 to 61854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,368 DEBUG Processing 439/664 atomic regions from SNP 131469 to 132069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,443 DEBUG Processing 206/723 atomic regions from SNP 61554 to 62154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,573 DEBUG Processing 440/664 atomic regions from SNP 131769 to 132369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,659 DEBUG Processing 207/723 atomic regions from SNP 61854 to 62454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,779 DEBUG Processing 441/664 atomic regions from SNP 132069 to 132669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,874 DEBUG Processing 208/723 atomic regions from SNP 62154 to 62754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,988 DEBUG Processing 442/664 atomic regions from SNP 132369 to 132969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,087 DEBUG Processing 209/723 atomic regions from SNP 62454 to 63054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,201 DEBUG Processing 443/664 atomic regions from SNP 132669 to 133269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,298 DEBUG Processing 210/723 atomic regions from SNP 62754 to 63354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,414 DEBUG Processing 444/664 atomic regions from SNP 132969 to 133569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,513 DEBUG Processing 211/723 atomic regions from SNP 63054 to 63654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,626 DEBUG Processing 445/664 atomic regions from SNP 133269 to 133869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,723 DEBUG Processing 212/723 atomic regions from SNP 63354 to 63954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,837 DEBUG Processing 446/664 atomic regions from SNP 133569 to 134169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,933 DEBUG Processing 213/723 atomic regions from SNP 63654 to 64254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,048 DEBUG Processing 447/664 atomic regions from SNP 133869 to 134469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,141 DEBUG Processing 214/723 atomic regions from SNP 63954 to 64554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,262 DEBUG Processing 448/664 atomic regions from SNP 134169 to 134769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,347 DEBUG Processing 215/723 atomic regions from SNP 64254 to 64854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,481 DEBUG Processing 449/664 atomic regions from SNP 134469 to 135069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,562 DEBUG Processing 216/723 atomic regions from SNP 64554 to 65154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,699 DEBUG Processing 450/664 atomic regions from SNP 134769 to 135369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,786 DEBUG Processing 217/723 atomic regions from SNP 64854 to 65454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,912 DEBUG Processing 451/664 atomic regions from SNP 135069 to 135669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,015 DEBUG Processing 218/723 atomic regions from SNP 65154 to 65754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,126 DEBUG Processing 452/664 atomic regions from SNP 135369 to 135969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,248 DEBUG Processing 219/723 atomic regions from SNP 65454 to 66054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,338 DEBUG Processing 453/664 atomic regions from SNP 135669 to 136269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,492 DEBUG Processing 220/723 atomic regions from SNP 65754 to 66354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,551 DEBUG Processing 454/664 atomic regions from SNP 135969 to 136569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,708 DEBUG Processing 221/723 atomic regions from SNP 66054 to 66654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,768 DEBUG Processing 455/664 atomic regions from SNP 136269 to 136869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,926 DEBUG Processing 222/723 atomic regions from SNP 66354 to 66954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,987 DEBUG Processing 456/664 atomic regions from SNP 136569 to 137169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,141 DEBUG Processing 223/723 atomic regions from SNP 66654 to 67254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,201 DEBUG Processing 457/664 atomic regions from SNP 136869 to 137469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,355 DEBUG Processing 224/723 atomic regions from SNP 66954 to 67554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,408 DEBUG Processing 458/664 atomic regions from SNP 137169 to 137769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,579 DEBUG Processing 225/723 atomic regions from SNP 67254 to 67854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,618 DEBUG Processing 459/664 atomic regions from SNP 137469 to 138069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,815 DEBUG Processing 226/723 atomic regions from SNP 67554 to 68154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,837 DEBUG Processing 460/664 atomic regions from SNP 137769 to 138369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,053 DEBUG Processing 227/723 atomic regions from SNP 67854 to 68454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,060 DEBUG Processing 461/664 atomic regions from SNP 138069 to 138669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,287 DEBUG Processing 228/723 atomic regions from SNP 68154 to 68754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,287 DEBUG Processing 462/664 atomic regions from SNP 138369 to 138969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,518 DEBUG Processing 463/664 atomic regions from SNP 138669 to 139269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,519 DEBUG Processing 229/723 atomic regions from SNP 68454 to 69054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,740 DEBUG Processing 464/664 atomic regions from SNP 138969 to 139569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,748 DEBUG Processing 230/723 atomic regions from SNP 68754 to 69354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,953 DEBUG Processing 465/664 atomic regions from SNP 139269 to 139869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,968 DEBUG Processing 231/723 atomic regions from SNP 69054 to 69654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,165 DEBUG Processing 466/664 atomic regions from SNP 139569 to 140169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,187 DEBUG Processing 232/723 atomic regions from SNP 69354 to 69954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,382 DEBUG Processing 467/664 atomic regions from SNP 139869 to 140469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,408 DEBUG Processing 233/723 atomic regions from SNP 69654 to 70254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,600 DEBUG Processing 468/664 atomic regions from SNP 140169 to 140769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,635 DEBUG Processing 234/723 atomic regions from SNP 69954 to 70554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,815 DEBUG Processing 469/664 atomic regions from SNP 140469 to 141069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,888 DEBUG Processing 235/723 atomic regions from SNP 70254 to 70854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,029 DEBUG Processing 470/664 atomic regions from SNP 140769 to 141369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,127 DEBUG Processing 236/723 atomic regions from SNP 70554 to 71154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,240 DEBUG Processing 471/664 atomic regions from SNP 141069 to 141669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,344 DEBUG Processing 237/723 atomic regions from SNP 70854 to 71454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,447 DEBUG Processing 472/664 atomic regions from SNP 141369 to 141969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,561 DEBUG Processing 238/723 atomic regions from SNP 71154 to 71754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,655 DEBUG Processing 473/664 atomic regions from SNP 141669 to 142269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,777 DEBUG Processing 239/723 atomic regions from SNP 71454 to 72054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,867 DEBUG Processing 474/664 atomic regions from SNP 141969 to 142569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,017 DEBUG Processing 240/723 atomic regions from SNP 71754 to 72354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,081 DEBUG Processing 475/664 atomic regions from SNP 142269 to 142869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,272 DEBUG Processing 241/723 atomic regions from SNP 72054 to 72654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,299 DEBUG Processing 476/664 atomic regions from SNP 142569 to 143169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,511 DEBUG Processing 477/664 atomic regions from SNP 142869 to 143469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,524 DEBUG Processing 242/723 atomic regions from SNP 72354 to 72954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,721 DEBUG Processing 478/664 atomic regions from SNP 143169 to 143769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,771 DEBUG Processing 243/723 atomic regions from SNP 72654 to 73254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,928 DEBUG Processing 479/664 atomic regions from SNP 143469 to 144069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,999 DEBUG Processing 244/723 atomic regions from SNP 72954 to 73554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,141 DEBUG Processing 480/664 atomic regions from SNP 143769 to 144369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,229 DEBUG Processing 245/723 atomic regions from SNP 73254 to 73854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,353 DEBUG Processing 481/664 atomic regions from SNP 144069 to 144669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,459 DEBUG Processing 246/723 atomic regions from SNP 73554 to 74154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,562 DEBUG Processing 482/664 atomic regions from SNP 144369 to 144969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,678 DEBUG Processing 247/723 atomic regions from SNP 73854 to 74454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,764 DEBUG Processing 483/664 atomic regions from SNP 144669 to 145269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,900 DEBUG Processing 248/723 atomic regions from SNP 74154 to 74754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,969 DEBUG Processing 484/664 atomic regions from SNP 144969 to 145569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,116 DEBUG Processing 249/723 atomic regions from SNP 74454 to 75054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,182 DEBUG Processing 485/664 atomic regions from SNP 145269 to 145869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,326 DEBUG Processing 250/723 atomic regions from SNP 74754 to 75354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,391 DEBUG Processing 486/664 atomic regions from SNP 145569 to 146169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,561 DEBUG Processing 251/723 atomic regions from SNP 75054 to 75654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,599 DEBUG Processing 487/664 atomic regions from SNP 145869 to 146469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,802 DEBUG Processing 252/723 atomic regions from SNP 75354 to 75954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,807 DEBUG Processing 488/664 atomic regions from SNP 146169 to 146769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,022 DEBUG Processing 489/664 atomic regions from SNP 146469 to 147069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,041 DEBUG Processing 253/723 atomic regions from SNP 75654 to 76254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,236 DEBUG Processing 490/664 atomic regions from SNP 146769 to 147369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,270 DEBUG Processing 254/723 atomic regions from SNP 75954 to 76554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,441 DEBUG Processing 491/664 atomic regions from SNP 147069 to 147669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,482 DEBUG Processing 255/723 atomic regions from SNP 76254 to 76854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,645 DEBUG Processing 492/664 atomic regions from SNP 147369 to 147969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,694 DEBUG Processing 256/723 atomic regions from SNP 76554 to 77154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,849 DEBUG Processing 493/664 atomic regions from SNP 147669 to 148269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,901 DEBUG Processing 257/723 atomic regions from SNP 76854 to 77454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,063 DEBUG Processing 494/664 atomic regions from SNP 147969 to 148569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,114 DEBUG Processing 258/723 atomic regions from SNP 77154 to 77754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,293 DEBUG Processing 495/664 atomic regions from SNP 148269 to 148869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,334 DEBUG Processing 259/723 atomic regions from SNP 77454 to 78054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,518 DEBUG Processing 496/664 atomic regions from SNP 148569 to 149169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,560 DEBUG Processing 260/723 atomic regions from SNP 77754 to 78354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,735 DEBUG Processing 497/664 atomic regions from SNP 148869 to 149469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,780 DEBUG Processing 261/723 atomic regions from SNP 78054 to 78654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,954 DEBUG Processing 498/664 atomic regions from SNP 149169 to 149769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,005 DEBUG Processing 262/723 atomic regions from SNP 78354 to 78954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,154 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:52:10,156 DEBUG chr13: Signal quantile: 0.990. signal threshold: 12. Best RMSEA: 0.013 2025-01-31 09:52:10,174 DEBUG Processing 499/664 atomic regions from SNP 149469 to 150069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,228 DEBUG Processing 263/723 atomic regions from SNP 78654 to 79254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,391 DEBUG Processing 500/664 atomic regions from SNP 149769 to 150369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,454 DEBUG Processing 264/723 atomic regions from SNP 78954 to 79554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,607 DEBUG Processing 501/664 atomic regions from SNP 150069 to 150669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,687 DEBUG Processing 265/723 atomic regions from SNP 79254 to 79854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,819 DEBUG Processing 502/664 atomic regions from SNP 150369 to 150969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,917 DEBUG Processing 266/723 atomic regions from SNP 79554 to 80154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,030 DEBUG Processing 503/664 atomic regions from SNP 150669 to 151269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,146 DEBUG Processing 267/723 atomic regions from SNP 79854 to 80454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,245 DEBUG Processing 504/664 atomic regions from SNP 150969 to 151569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,373 DEBUG Processing 268/723 atomic regions from SNP 80154 to 80754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,462 DEBUG Processing 505/664 atomic regions from SNP 151269 to 151869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,600 DEBUG Processing 269/723 atomic regions from SNP 80454 to 81054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,684 DEBUG Processing 506/664 atomic regions from SNP 151569 to 152169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,828 DEBUG Processing 270/723 atomic regions from SNP 80754 to 81354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,906 DEBUG Processing 507/664 atomic regions from SNP 151869 to 152469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,048 DEBUG Processing 271/723 atomic regions from SNP 81054 to 81654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,134 DEBUG Processing 508/664 atomic regions from SNP 152169 to 152769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,264 DEBUG Processing 272/723 atomic regions from SNP 81354 to 81954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,360 DEBUG Processing 509/664 atomic regions from SNP 152469 to 153069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,450 DEBUG chr13 total SNP count: 203339 2025-01-31 09:52:12,451 DEBUG chr13 length: 120421639 2025-01-31 09:52:12,451 DEBUG ----------------------------------------- 2025-01-31 09:52:12,451 INFO Processing SNPs in chr13 2025-01-31 09:52:12,484 DEBUG Processing 273/723 atomic regions from SNP 81654 to 82254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,582 DEBUG Processing 510/664 atomic regions from SNP 152769 to 153369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,647 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 203339)] 2025-01-31 09:52:12,701 DEBUG Processing 274/723 atomic regions from SNP 81954 to 82554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,783 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:12,797 DEBUG Processing 511/664 atomic regions from SNP 153069 to 153669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,919 DEBUG Processing 275/723 atomic regions from SNP 82254 to 82854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,013 DEBUG Processing 512/664 atomic regions from SNP 153369 to 153969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,137 DEBUG Processing 276/723 atomic regions from SNP 82554 to 83154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,232 DEBUG Processing 513/664 atomic regions from SNP 153669 to 154269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,353 DEBUG Processing 277/723 atomic regions from SNP 82854 to 83454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,448 DEBUG Processing 514/664 atomic regions from SNP 153969 to 154569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,570 DEBUG Processing 278/723 atomic regions from SNP 83154 to 83754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,666 DEBUG Processing 515/664 atomic regions from SNP 154269 to 154869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,788 DEBUG Processing 279/723 atomic regions from SNP 83454 to 84054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,883 DEBUG Processing 516/664 atomic regions from SNP 154569 to 155169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,006 DEBUG Processing 280/723 atomic regions from SNP 83754 to 84354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,103 DEBUG Processing 517/664 atomic regions from SNP 154869 to 155469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,222 DEBUG Processing 281/723 atomic regions from SNP 84054 to 84654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,324 DEBUG Processing 518/664 atomic regions from SNP 155169 to 155769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,447 DEBUG Processing 282/723 atomic regions from SNP 84354 to 84954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,545 DEBUG Processing 519/664 atomic regions from SNP 155469 to 156069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,677 DEBUG Processing 283/723 atomic regions from SNP 84654 to 85254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,765 DEBUG Processing 520/664 atomic regions from SNP 155769 to 156369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,889 DEBUG Processing 284/723 atomic regions from SNP 84954 to 85554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,984 DEBUG Processing 521/664 atomic regions from SNP 156069 to 156669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,103 DEBUG Processing 285/723 atomic regions from SNP 85254 to 85854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,200 DEBUG Processing 522/664 atomic regions from SNP 156369 to 156969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,318 DEBUG Processing 286/723 atomic regions from SNP 85554 to 86154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,414 DEBUG Processing 523/664 atomic regions from SNP 156669 to 157269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,452 DEBUG Segmenting atomic regions: 2025-01-31 09:52:15,544 DEBUG Processing 287/723 atomic regions from SNP 85854 to 86454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,545 DEBUG Processing 1/704 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:15,627 DEBUG Processing 524/664 atomic regions from SNP 156969 to 157569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,771 DEBUG Processing 288/723 atomic regions from SNP 86154 to 86754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,786 DEBUG Processing 2/704 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:15,843 DEBUG Processing 525/664 atomic regions from SNP 157269 to 157869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,996 DEBUG Processing 289/723 atomic regions from SNP 86454 to 87054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,020 DEBUG Processing 3/704 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,064 DEBUG Processing 526/664 atomic regions from SNP 157569 to 158169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,226 DEBUG Processing 290/723 atomic regions from SNP 86754 to 87354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,242 DEBUG Processing 4/704 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,287 DEBUG Processing 527/664 atomic regions from SNP 157869 to 158469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,448 DEBUG Processing 291/723 atomic regions from SNP 87054 to 87654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,458 DEBUG Processing 5/704 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,509 DEBUG Processing 528/664 atomic regions from SNP 158169 to 158769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,668 DEBUG Processing 292/723 atomic regions from SNP 87354 to 87954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,685 DEBUG Processing 6/704 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,728 DEBUG Processing 529/664 atomic regions from SNP 158469 to 159069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,887 DEBUG Processing 293/723 atomic regions from SNP 87654 to 88254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,922 DEBUG Processing 7/704 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,946 DEBUG Processing 530/664 atomic regions from SNP 158769 to 159369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,104 DEBUG Processing 294/723 atomic regions from SNP 87954 to 88554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,161 DEBUG Processing 8/704 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,171 DEBUG Processing 531/664 atomic regions from SNP 159069 to 159669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,327 DEBUG Processing 295/723 atomic regions from SNP 88254 to 88854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,379 DEBUG Processing 9/704 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,385 DEBUG Processing 532/664 atomic regions from SNP 159369 to 159969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,547 DEBUG Processing 296/723 atomic regions from SNP 88554 to 89154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,604 DEBUG Processing 533/664 atomic regions from SNP 159669 to 160269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,606 DEBUG Processing 10/704 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,766 DEBUG Processing 297/723 atomic regions from SNP 88854 to 89454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,827 DEBUG Processing 534/664 atomic regions from SNP 159969 to 160569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,838 DEBUG Processing 11/704 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,975 DEBUG Processing 298/723 atomic regions from SNP 89154 to 89754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,046 DEBUG Processing 535/664 atomic regions from SNP 160269 to 160869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,067 DEBUG Processing 12/704 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,180 DEBUG Processing 299/723 atomic regions from SNP 89454 to 90054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,261 DEBUG Processing 536/664 atomic regions from SNP 160569 to 161169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,294 DEBUG Processing 13/704 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,386 DEBUG Processing 300/723 atomic regions from SNP 89754 to 90354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,471 DEBUG Processing 537/664 atomic regions from SNP 160869 to 161469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,503 DEBUG Processing 14/704 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,595 DEBUG Processing 301/723 atomic regions from SNP 90054 to 90654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,675 DEBUG Processing 538/664 atomic regions from SNP 161169 to 161769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,706 DEBUG Processing 15/704 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,804 DEBUG Processing 302/723 atomic regions from SNP 90354 to 90954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,890 DEBUG Processing 539/664 atomic regions from SNP 161469 to 162069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,913 DEBUG Processing 16/704 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,018 DEBUG Processing 303/723 atomic regions from SNP 90654 to 91254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,104 DEBUG Processing 540/664 atomic regions from SNP 161769 to 162369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,124 DEBUG Processing 17/704 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,237 DEBUG Processing 304/723 atomic regions from SNP 90954 to 91554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,334 DEBUG Processing 541/664 atomic regions from SNP 162069 to 162669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,354 DEBUG Processing 18/704 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,482 DEBUG Processing 305/723 atomic regions from SNP 91254 to 91854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,561 DEBUG Processing 19/704 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,566 DEBUG Processing 542/664 atomic regions from SNP 162369 to 162969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,716 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:52:19,728 DEBUG Processing 306/723 atomic regions from SNP 91554 to 92154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,771 DEBUG Processing 20/704 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,783 DEBUG Processing 543/664 atomic regions from SNP 162669 to 163269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,957 DEBUG Processing 307/723 atomic regions from SNP 91854 to 92454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,001 DEBUG Processing 544/664 atomic regions from SNP 162969 to 163569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,004 DEBUG Processing 21/704 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,190 DEBUG Processing 308/723 atomic regions from SNP 92154 to 92754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,220 DEBUG Processing 545/664 atomic regions from SNP 163269 to 163869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,236 DEBUG Processing 22/704 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,421 DEBUG Processing 309/723 atomic regions from SNP 92454 to 93054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,443 DEBUG Processing 546/664 atomic regions from SNP 163569 to 164169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,446 DEBUG Processing 23/704 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,650 DEBUG Processing 310/723 atomic regions from SNP 92754 to 93354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,659 DEBUG Processing 24/704 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,669 DEBUG Processing 547/664 atomic regions from SNP 163869 to 164469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,881 DEBUG Processing 25/704 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,882 DEBUG Processing 311/723 atomic regions from SNP 93054 to 93654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,897 DEBUG Processing 548/664 atomic regions from SNP 164169 to 164769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,092 DEBUG Processing 26/704 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,112 DEBUG Processing 312/723 atomic regions from SNP 93354 to 93954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,121 DEBUG Processing 549/664 atomic regions from SNP 164469 to 165069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,312 DEBUG Processing 27/704 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,347 DEBUG Processing 313/723 atomic regions from SNP 93654 to 94254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,350 DEBUG Processing 550/664 atomic regions from SNP 164769 to 165369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,525 DEBUG Processing 28/704 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,578 DEBUG Processing 551/664 atomic regions from SNP 165069 to 165669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,580 DEBUG Processing 314/723 atomic regions from SNP 93954 to 94554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,735 DEBUG Processing 29/704 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,803 DEBUG Processing 552/664 atomic regions from SNP 165369 to 165969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,810 DEBUG Processing 315/723 atomic regions from SNP 94254 to 94854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,945 DEBUG Processing 30/704 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,030 DEBUG Processing 553/664 atomic regions from SNP 165669 to 166269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,040 DEBUG Processing 316/723 atomic regions from SNP 94554 to 95154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,161 DEBUG Processing 31/704 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,256 DEBUG Processing 554/664 atomic regions from SNP 165969 to 166569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,270 DEBUG Processing 317/723 atomic regions from SNP 94854 to 95454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,376 DEBUG Processing 32/704 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,480 DEBUG Processing 555/664 atomic regions from SNP 166269 to 166869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,498 DEBUG Processing 318/723 atomic regions from SNP 95154 to 95754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,591 DEBUG Processing 33/704 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,702 DEBUG Processing 556/664 atomic regions from SNP 166569 to 167169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,739 DEBUG Processing 319/723 atomic regions from SNP 95454 to 96054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,807 DEBUG Processing 34/704 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,924 DEBUG Processing 557/664 atomic regions from SNP 166869 to 167469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,992 DEBUG Processing 320/723 atomic regions from SNP 95754 to 96354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,020 DEBUG Processing 35/704 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,146 DEBUG Processing 558/664 atomic regions from SNP 167169 to 167769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,234 DEBUG Processing 36/704 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,240 DEBUG Processing 321/723 atomic regions from SNP 96054 to 96654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,363 DEBUG Processing 559/664 atomic regions from SNP 167469 to 168069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,444 DEBUG Processing 37/704 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,467 DEBUG Processing 322/723 atomic regions from SNP 96354 to 96954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,580 DEBUG Processing 560/664 atomic regions from SNP 167769 to 168369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,653 DEBUG Processing 38/704 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,706 DEBUG Processing 323/723 atomic regions from SNP 96654 to 97254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,795 DEBUG Processing 561/664 atomic regions from SNP 168069 to 168669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,868 DEBUG Processing 39/704 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,959 DEBUG Processing 324/723 atomic regions from SNP 96954 to 97554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,011 DEBUG Processing 562/664 atomic regions from SNP 168369 to 168969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,093 DEBUG Processing 40/704 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,217 DEBUG Processing 325/723 atomic regions from SNP 97254 to 97854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,236 DEBUG Processing 563/664 atomic regions from SNP 168669 to 169269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,314 DEBUG Processing 41/704 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,460 DEBUG Processing 564/664 atomic regions from SNP 168969 to 169569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,467 DEBUG Processing 326/723 atomic regions from SNP 97554 to 98154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,540 DEBUG Processing 42/704 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,685 DEBUG Processing 565/664 atomic regions from SNP 169269 to 169869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,712 DEBUG Processing 327/723 atomic regions from SNP 97854 to 98454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,771 DEBUG Processing 43/704 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,905 DEBUG Processing 566/664 atomic regions from SNP 169569 to 170169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,967 DEBUG Processing 328/723 atomic regions from SNP 98154 to 98754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,993 DEBUG Processing 44/704 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,121 DEBUG Processing 567/664 atomic regions from SNP 169869 to 170469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,212 DEBUG Processing 45/704 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,213 DEBUG Processing 329/723 atomic regions from SNP 98454 to 99054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,333 DEBUG Processing 568/664 atomic regions from SNP 170169 to 170769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,431 DEBUG Processing 46/704 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,457 DEBUG Processing 330/723 atomic regions from SNP 98754 to 99354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,550 DEBUG Processing 569/664 atomic regions from SNP 170469 to 171069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,652 DEBUG Processing 47/704 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,700 DEBUG Processing 331/723 atomic regions from SNP 99054 to 99654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,761 DEBUG Processing 570/664 atomic regions from SNP 170769 to 171369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,868 DEBUG Processing 48/704 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,928 DEBUG Processing 332/723 atomic regions from SNP 99354 to 99954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,970 DEBUG Processing 571/664 atomic regions from SNP 171069 to 171669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,080 DEBUG Processing 49/704 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,147 DEBUG Processing 333/723 atomic regions from SNP 99654 to 100254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,182 DEBUG Processing 572/664 atomic regions from SNP 171369 to 171969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,298 DEBUG Processing 50/704 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,387 DEBUG Processing 334/723 atomic regions from SNP 99954 to 100554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,394 DEBUG Processing 573/664 atomic regions from SNP 171669 to 172269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,513 DEBUG Processing 51/704 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,612 DEBUG Processing 574/664 atomic regions from SNP 171969 to 172569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,629 DEBUG Processing 335/723 atomic regions from SNP 100254 to 100854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,723 DEBUG Processing 52/704 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,825 DEBUG Processing 575/664 atomic regions from SNP 172269 to 172869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,872 DEBUG Processing 336/723 atomic regions from SNP 100554 to 101154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,943 DEBUG Processing 53/704 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,039 DEBUG Processing 576/664 atomic regions from SNP 172569 to 173169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,120 DEBUG Processing 337/723 atomic regions from SNP 100854 to 101454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,155 DEBUG Processing 54/704 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,241 DEBUG Processing 577/664 atomic regions from SNP 172869 to 173469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,334 DEBUG Processing 338/723 atomic regions from SNP 101154 to 101754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,372 DEBUG Processing 55/704 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,447 DEBUG Processing 578/664 atomic regions from SNP 173169 to 173769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,550 DEBUG Processing 339/723 atomic regions from SNP 101454 to 102054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,587 DEBUG Processing 56/704 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,661 DEBUG Processing 579/664 atomic regions from SNP 173469 to 174069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,775 DEBUG Processing 340/723 atomic regions from SNP 101754 to 102354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,802 DEBUG Processing 57/704 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,872 DEBUG Processing 580/664 atomic regions from SNP 173769 to 174369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,997 DEBUG Processing 341/723 atomic regions from SNP 102054 to 102654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,016 DEBUG Processing 58/704 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,080 DEBUG Processing 581/664 atomic regions from SNP 174069 to 174669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,229 DEBUG Processing 59/704 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,233 DEBUG Processing 342/723 atomic regions from SNP 102354 to 102954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,302 DEBUG Processing 582/664 atomic regions from SNP 174369 to 174969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,442 DEBUG Processing 60/704 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,451 DEBUG Processing 343/723 atomic regions from SNP 102654 to 103254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,512 DEBUG Processing 583/664 atomic regions from SNP 174669 to 175269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,658 DEBUG Processing 61/704 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,674 DEBUG Processing 344/723 atomic regions from SNP 102954 to 103554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,725 DEBUG Processing 584/664 atomic regions from SNP 174969 to 175569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,875 DEBUG Processing 62/704 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,898 DEBUG Processing 345/723 atomic regions from SNP 103254 to 103854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,935 DEBUG Processing 585/664 atomic regions from SNP 175269 to 175869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,096 DEBUG Processing 63/704 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,119 DEBUG Processing 346/723 atomic regions from SNP 103554 to 104154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,146 DEBUG Processing 586/664 atomic regions from SNP 175569 to 176169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,309 DEBUG Processing 64/704 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,351 DEBUG Processing 347/723 atomic regions from SNP 103854 to 104454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,359 DEBUG Processing 587/664 atomic regions from SNP 175869 to 176469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,531 DEBUG Processing 65/704 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,585 DEBUG Processing 588/664 atomic regions from SNP 176169 to 176769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,588 DEBUG Processing 348/723 atomic regions from SNP 104154 to 104754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,743 DEBUG Processing 66/704 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,807 DEBUG Processing 589/664 atomic regions from SNP 176469 to 177069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,814 DEBUG Processing 349/723 atomic regions from SNP 104454 to 105054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,955 DEBUG Processing 67/704 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,029 DEBUG Processing 590/664 atomic regions from SNP 176769 to 177369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,036 DEBUG Processing 350/723 atomic regions from SNP 104754 to 105354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,171 DEBUG Processing 68/704 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,246 DEBUG Processing 591/664 atomic regions from SNP 177069 to 177669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,287 DEBUG Processing 351/723 atomic regions from SNP 105054 to 105654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,386 DEBUG Processing 69/704 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,464 DEBUG Processing 592/664 atomic regions from SNP 177369 to 177969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,518 DEBUG Processing 352/723 atomic regions from SNP 105354 to 105954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,605 DEBUG Processing 70/704 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,679 DEBUG Processing 593/664 atomic regions from SNP 177669 to 178269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,746 DEBUG Processing 353/723 atomic regions from SNP 105654 to 106254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,820 DEBUG Processing 71/704 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,896 DEBUG Processing 594/664 atomic regions from SNP 177969 to 178569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,992 DEBUG Processing 354/723 atomic regions from SNP 105954 to 106554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,030 DEBUG Processing 72/704 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,112 DEBUG Processing 595/664 atomic regions from SNP 178269 to 178869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,230 DEBUG Processing 355/723 atomic regions from SNP 106254 to 106854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,248 DEBUG Processing 73/704 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,317 DEBUG Processing 596/664 atomic regions from SNP 178569 to 179169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,459 DEBUG Processing 356/723 atomic regions from SNP 106554 to 107154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,470 DEBUG Processing 74/704 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,524 DEBUG Processing 597/664 atomic regions from SNP 178869 to 179469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,692 DEBUG Processing 75/704 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,710 DEBUG Processing 357/723 atomic regions from SNP 106854 to 107454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,749 DEBUG Processing 598/664 atomic regions from SNP 179169 to 179769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,905 DEBUG Processing 76/704 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,938 DEBUG Processing 358/723 atomic regions from SNP 107154 to 107754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,968 DEBUG Processing 599/664 atomic regions from SNP 179469 to 180069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,128 DEBUG Processing 77/704 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,172 DEBUG Processing 359/723 atomic regions from SNP 107454 to 108054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,193 DEBUG Processing 600/664 atomic regions from SNP 179769 to 180369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,229 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:52:32,230 DEBUG chr12: Signal quantile: 0.992. signal threshold: 11. Best RMSEA: 0.017 2025-01-31 09:52:32,335 DEBUG Processing 78/704 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,401 DEBUG Processing 360/723 atomic regions from SNP 107754 to 108354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,416 DEBUG Processing 601/664 atomic regions from SNP 180069 to 180669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,546 DEBUG Processing 79/704 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,646 DEBUG Processing 361/723 atomic regions from SNP 108054 to 108654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,649 DEBUG Processing 602/664 atomic regions from SNP 180369 to 180969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,755 DEBUG Processing 80/704 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,873 DEBUG Processing 603/664 atomic regions from SNP 180669 to 181269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,888 DEBUG Processing 362/723 atomic regions from SNP 108354 to 108954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,961 DEBUG Processing 81/704 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,096 DEBUG Processing 604/664 atomic regions from SNP 180969 to 181569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,140 DEBUG Processing 363/723 atomic regions from SNP 108654 to 109254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,170 DEBUG Processing 82/704 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,318 DEBUG Processing 605/664 atomic regions from SNP 181269 to 181869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,392 DEBUG Processing 83/704 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,399 DEBUG Processing 364/723 atomic regions from SNP 108954 to 109554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,538 DEBUG Processing 606/664 atomic regions from SNP 181569 to 182169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,609 DEBUG Processing 84/704 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,663 DEBUG Processing 365/723 atomic regions from SNP 109254 to 109854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,747 DEBUG Processing 607/664 atomic regions from SNP 181869 to 182469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,825 DEBUG Processing 85/704 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,906 DEBUG Processing 366/723 atomic regions from SNP 109554 to 110154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,956 DEBUG Processing 608/664 atomic regions from SNP 182169 to 182769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,039 DEBUG Processing 86/704 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,152 DEBUG Processing 367/723 atomic regions from SNP 109854 to 110454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,171 DEBUG Processing 609/664 atomic regions from SNP 182469 to 183069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,250 DEBUG Processing 87/704 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,306 DEBUG chr12 total SNP count: 198712 2025-01-31 09:52:34,306 DEBUG chr12 length: 120129022 2025-01-31 09:52:34,306 DEBUG ----------------------------------------- 2025-01-31 09:52:34,306 INFO Processing SNPs in chr12 2025-01-31 09:52:34,390 DEBUG Processing 610/664 atomic regions from SNP 182769 to 183369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,405 DEBUG Processing 368/723 atomic regions from SNP 110154 to 110754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,458 DEBUG Processing 88/704 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,498 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 198712)] 2025-01-31 09:52:34,603 DEBUG Processing 611/664 atomic regions from SNP 183069 to 183669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,630 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:34,652 DEBUG Processing 369/723 atomic regions from SNP 110454 to 111054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,660 DEBUG Processing 89/704 atomic regions from SNP 26488 to 27089 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,814 DEBUG Processing 612/664 atomic regions from SNP 183369 to 183969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,866 DEBUG Processing 90/704 atomic regions from SNP 26789 to 27390 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,896 DEBUG Processing 370/723 atomic regions from SNP 110754 to 111354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,022 DEBUG Processing 613/664 atomic regions from SNP 183669 to 184269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,073 DEBUG Processing 91/704 atomic regions from SNP 27090 to 27691 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,141 DEBUG Processing 371/723 atomic regions from SNP 111054 to 111654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,229 DEBUG Processing 614/664 atomic regions from SNP 183969 to 184569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,275 DEBUG Processing 92/704 atomic regions from SNP 27391 to 27992 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,395 DEBUG Processing 372/723 atomic regions from SNP 111354 to 111954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,441 DEBUG Processing 615/664 atomic regions from SNP 184269 to 184869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,477 DEBUG Processing 93/704 atomic regions from SNP 27692 to 28293 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,637 DEBUG Processing 373/723 atomic regions from SNP 111654 to 112254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,655 DEBUG Processing 616/664 atomic regions from SNP 184569 to 185169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,677 DEBUG Processing 94/704 atomic regions from SNP 27993 to 28594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,874 DEBUG Processing 617/664 atomic regions from SNP 184869 to 185469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,882 DEBUG Processing 95/704 atomic regions from SNP 28294 to 28895 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,889 DEBUG Processing 374/723 atomic regions from SNP 111954 to 112554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,094 DEBUG Processing 96/704 atomic regions from SNP 28595 to 29196 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,102 DEBUG Processing 618/664 atomic regions from SNP 185169 to 185769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,143 DEBUG Processing 375/723 atomic regions from SNP 112254 to 112854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,311 DEBUG Processing 97/704 atomic regions from SNP 28896 to 29497 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,321 DEBUG Processing 619/664 atomic regions from SNP 185469 to 186069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,392 DEBUG Processing 376/723 atomic regions from SNP 112554 to 113154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,527 DEBUG Processing 98/704 atomic regions from SNP 29197 to 29798 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,540 DEBUG Processing 620/664 atomic regions from SNP 185769 to 186369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,634 DEBUG Processing 377/723 atomic regions from SNP 112854 to 113454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,754 DEBUG Processing 621/664 atomic regions from SNP 186069 to 186669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,764 DEBUG Processing 99/704 atomic regions from SNP 29498 to 30099 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,899 DEBUG Processing 378/723 atomic regions from SNP 113154 to 113754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,963 DEBUG Processing 622/664 atomic regions from SNP 186369 to 186969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,972 DEBUG Processing 100/704 atomic regions from SNP 29799 to 30400 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,023 DEBUG Segmenting atomic regions: 2025-01-31 09:52:37,109 DEBUG Processing 1/676 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,133 DEBUG Processing 379/723 atomic regions from SNP 113454 to 114054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,174 DEBUG Processing 101/704 atomic regions from SNP 30100 to 30701 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,177 DEBUG Processing 623/664 atomic regions from SNP 186669 to 187269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,323 DEBUG Processing 2/676 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,359 DEBUG Processing 380/723 atomic regions from SNP 113754 to 114354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,382 DEBUG Processing 102/704 atomic regions from SNP 30401 to 31002 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,396 DEBUG Processing 624/664 atomic regions from SNP 186969 to 187569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,541 DEBUG Processing 3/676 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,590 DEBUG Processing 103/704 atomic regions from SNP 30702 to 31303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,595 DEBUG Processing 381/723 atomic regions from SNP 114054 to 114654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,616 DEBUG Processing 625/664 atomic regions from SNP 187269 to 187869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,767 DEBUG Processing 4/676 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,803 DEBUG Processing 104/704 atomic regions from SNP 31003 to 31604 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,830 DEBUG Processing 382/723 atomic regions from SNP 114354 to 114954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,841 DEBUG Processing 626/664 atomic regions from SNP 187569 to 188169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,994 DEBUG Processing 5/676 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,012 DEBUG Processing 105/704 atomic regions from SNP 31304 to 31905 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,057 DEBUG Processing 627/664 atomic regions from SNP 187869 to 188469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,072 DEBUG Processing 383/723 atomic regions from SNP 114654 to 115254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,220 DEBUG Processing 6/676 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,221 DEBUG Processing 106/704 atomic regions from SNP 31605 to 32206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,273 DEBUG Processing 628/664 atomic regions from SNP 188169 to 188769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,310 DEBUG Processing 384/723 atomic regions from SNP 114954 to 115554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,429 DEBUG Processing 107/704 atomic regions from SNP 31906 to 32507 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,444 DEBUG Processing 7/676 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,492 DEBUG Processing 629/664 atomic regions from SNP 188469 to 189069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,537 DEBUG Processing 385/723 atomic regions from SNP 115254 to 115854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,636 DEBUG Processing 108/704 atomic regions from SNP 32207 to 32808 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,667 DEBUG Processing 8/676 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,711 DEBUG Processing 630/664 atomic regions from SNP 188769 to 189369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,760 DEBUG Processing 386/723 atomic regions from SNP 115554 to 116154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,848 DEBUG Processing 109/704 atomic regions from SNP 32508 to 33109 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,889 DEBUG Processing 9/676 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,936 DEBUG Processing 631/664 atomic regions from SNP 189069 to 189669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,990 DEBUG Processing 387/723 atomic regions from SNP 115854 to 116454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,058 DEBUG Processing 110/704 atomic regions from SNP 32809 to 33410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,114 DEBUG Processing 10/676 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,158 DEBUG Processing 632/664 atomic regions from SNP 189369 to 189969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,223 DEBUG Processing 388/723 atomic regions from SNP 116154 to 116754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,268 DEBUG Processing 111/704 atomic regions from SNP 33110 to 33711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,331 DEBUG Processing 11/676 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,374 DEBUG Processing 633/664 atomic regions from SNP 189669 to 190269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,451 DEBUG Processing 389/723 atomic regions from SNP 116454 to 117054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,490 DEBUG Processing 112/704 atomic regions from SNP 33411 to 34012 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,552 DEBUG Processing 12/676 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,590 DEBUG Processing 634/664 atomic regions from SNP 189969 to 190569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,682 DEBUG Processing 390/723 atomic regions from SNP 116754 to 117354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,724 DEBUG Processing 113/704 atomic regions from SNP 33712 to 34313 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,773 DEBUG Processing 13/676 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,804 DEBUG Processing 635/664 atomic regions from SNP 190269 to 190869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,909 DEBUG Processing 391/723 atomic regions from SNP 117054 to 117654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,956 DEBUG Processing 114/704 atomic regions from SNP 34013 to 34614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,995 DEBUG Processing 14/676 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,019 DEBUG Processing 636/664 atomic regions from SNP 190569 to 191169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,147 DEBUG Processing 392/723 atomic regions from SNP 117354 to 117954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,173 DEBUG Processing 115/704 atomic regions from SNP 34314 to 34915 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,227 DEBUG Processing 15/676 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,244 DEBUG Processing 637/664 atomic regions from SNP 190869 to 191469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,370 DEBUG Processing 393/723 atomic regions from SNP 117654 to 118254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,386 DEBUG Processing 116/704 atomic regions from SNP 34615 to 35216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,459 DEBUG Processing 16/676 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,467 DEBUG Processing 638/664 atomic regions from SNP 191169 to 191769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,584 DEBUG Processing 394/723 atomic regions from SNP 117954 to 118554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,594 DEBUG Processing 117/704 atomic regions from SNP 34916 to 35517 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,690 DEBUG Processing 17/676 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,693 DEBUG Processing 639/664 atomic regions from SNP 191469 to 192069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,801 DEBUG Processing 118/704 atomic regions from SNP 35217 to 35818 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,803 DEBUG Processing 395/723 atomic regions from SNP 118254 to 118854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,923 DEBUG Processing 640/664 atomic regions from SNP 191769 to 192369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,925 DEBUG Processing 18/676 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,007 DEBUG Processing 119/704 atomic regions from SNP 35518 to 36119 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,023 DEBUG Processing 396/723 atomic regions from SNP 118554 to 119154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,142 DEBUG Processing 641/664 atomic regions from SNP 192069 to 192669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,148 DEBUG Processing 19/676 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,210 DEBUG Processing 120/704 atomic regions from SNP 35819 to 36420 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,247 DEBUG Processing 397/723 atomic regions from SNP 118854 to 119454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,359 DEBUG Processing 642/664 atomic regions from SNP 192369 to 192969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,366 DEBUG Processing 20/676 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,416 DEBUG Processing 121/704 atomic regions from SNP 36120 to 36721 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,469 DEBUG Processing 398/723 atomic regions from SNP 119154 to 119754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,571 DEBUG Processing 643/664 atomic regions from SNP 192669 to 193269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,581 DEBUG Processing 21/676 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,626 DEBUG Processing 122/704 atomic regions from SNP 36421 to 37022 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,690 DEBUG Processing 399/723 atomic regions from SNP 119454 to 120054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,785 DEBUG Processing 644/664 atomic regions from SNP 192969 to 193569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,798 DEBUG Processing 22/676 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,831 DEBUG Processing 123/704 atomic regions from SNP 36722 to 37323 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,911 DEBUG Processing 400/723 atomic regions from SNP 119754 to 120354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,002 DEBUG Processing 645/664 atomic regions from SNP 193269 to 193869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,017 DEBUG Processing 23/676 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,038 DEBUG Processing 124/704 atomic regions from SNP 37023 to 37624 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,126 DEBUG Processing 401/723 atomic regions from SNP 120054 to 120654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,239 DEBUG Processing 24/676 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,244 DEBUG Processing 646/664 atomic regions from SNP 193569 to 194169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,253 DEBUG Processing 125/704 atomic regions from SNP 37324 to 37925 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,342 DEBUG Processing 402/723 atomic regions from SNP 120354 to 120954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,462 DEBUG Processing 126/704 atomic regions from SNP 37625 to 38226 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,463 DEBUG Processing 25/676 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,484 DEBUG Processing 647/664 atomic regions from SNP 193869 to 194469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,561 DEBUG Processing 403/723 atomic regions from SNP 120654 to 121254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,676 DEBUG Processing 127/704 atomic regions from SNP 37926 to 38527 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,688 DEBUG Processing 26/676 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,708 DEBUG Processing 648/664 atomic regions from SNP 194169 to 194769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,783 DEBUG Processing 404/723 atomic regions from SNP 120954 to 121554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,885 DEBUG Processing 128/704 atomic regions from SNP 38227 to 38828 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,904 DEBUG Processing 27/676 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,954 DEBUG Processing 649/664 atomic regions from SNP 194469 to 195069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,017 DEBUG Processing 405/723 atomic regions from SNP 121254 to 121854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,092 DEBUG Processing 129/704 atomic regions from SNP 38528 to 39129 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,118 DEBUG Processing 28/676 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,192 DEBUG Processing 650/664 atomic regions from SNP 194769 to 195369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,253 DEBUG Processing 406/723 atomic regions from SNP 121554 to 122154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,297 DEBUG Processing 130/704 atomic regions from SNP 38829 to 39430 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,323 DEBUG Processing 29/676 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,427 DEBUG Processing 651/664 atomic regions from SNP 195069 to 195669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,501 DEBUG Processing 407/723 atomic regions from SNP 121854 to 122454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,507 DEBUG Processing 131/704 atomic regions from SNP 39130 to 39731 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,532 DEBUG Processing 30/676 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,644 DEBUG Processing 652/664 atomic regions from SNP 195369 to 195969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,715 DEBUG Processing 132/704 atomic regions from SNP 39431 to 40032 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,740 DEBUG Processing 408/723 atomic regions from SNP 122154 to 122754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,750 DEBUG Processing 31/676 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,853 DEBUG Processing 653/664 atomic regions from SNP 195669 to 196269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,922 DEBUG Processing 133/704 atomic regions from SNP 39732 to 40333 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,967 DEBUG Processing 409/723 atomic regions from SNP 122454 to 123054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,972 DEBUG Processing 32/676 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,064 DEBUG Processing 654/664 atomic regions from SNP 195969 to 196569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,130 DEBUG Processing 134/704 atomic regions from SNP 40033 to 40634 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,196 DEBUG Processing 410/723 atomic regions from SNP 122754 to 123354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,196 DEBUG Processing 33/676 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,274 DEBUG Processing 655/664 atomic regions from SNP 196269 to 196869 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,336 DEBUG Processing 135/704 atomic regions from SNP 40334 to 40935 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,425 DEBUG Processing 411/723 atomic regions from SNP 123054 to 123654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,425 DEBUG Processing 34/676 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,486 DEBUG Processing 656/664 atomic regions from SNP 196569 to 197169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,540 DEBUG Processing 136/704 atomic regions from SNP 40635 to 41236 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,657 DEBUG Processing 412/723 atomic regions from SNP 123354 to 123954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,669 DEBUG Processing 35/676 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,703 DEBUG Processing 657/664 atomic regions from SNP 196869 to 197469 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,742 DEBUG Processing 137/704 atomic regions from SNP 40936 to 41537 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,877 DEBUG Processing 413/723 atomic regions from SNP 123654 to 124254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,891 DEBUG Processing 36/676 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,917 DEBUG Processing 658/664 atomic regions from SNP 197169 to 197769 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,947 DEBUG Processing 138/704 atomic regions from SNP 41237 to 41838 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,094 DEBUG Processing 414/723 atomic regions from SNP 123954 to 124554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,107 DEBUG Processing 37/676 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,130 DEBUG Processing 659/664 atomic regions from SNP 197469 to 198069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,154 DEBUG Processing 139/704 atomic regions from SNP 41538 to 42139 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,315 DEBUG Processing 415/723 atomic regions from SNP 124254 to 124854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,324 DEBUG Processing 38/676 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,343 DEBUG Processing 660/664 atomic regions from SNP 197769 to 198369 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,365 DEBUG Processing 140/704 atomic regions from SNP 41839 to 42440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,545 DEBUG Processing 416/723 atomic regions from SNP 124554 to 125154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,546 DEBUG Processing 39/676 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,560 DEBUG Processing 661/664 atomic regions from SNP 198069 to 198669 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,576 DEBUG Processing 141/704 atomic regions from SNP 42140 to 42740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,768 DEBUG Processing 40/676 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,777 DEBUG Processing 662/664 atomic regions from SNP 198369 to 198969 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,785 DEBUG Processing 142/704 atomic regions from SNP 42440 to 43040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,792 DEBUG Processing 417/723 atomic regions from SNP 124854 to 125454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,993 DEBUG Processing 41/676 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,996 DEBUG Processing 143/704 atomic regions from SNP 42740 to 43340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,000 DEBUG Processing 663/664 atomic regions from SNP 198669 to 199269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,041 DEBUG Processing 418/723 atomic regions from SNP 125154 to 125754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,207 DEBUG Processing 144/704 atomic regions from SNP 43040 to 43640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,222 DEBUG Processing 42/676 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,224 DEBUG Processing 664/664 atomic regions from SNP 198969 to 199569 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,285 DEBUG Processing 419/723 atomic regions from SNP 125454 to 126054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,368 DEBUG Unique SNPs positions in subchromosome 2: 199570 2025-01-31 09:52:46,417 DEBUG Processing 145/704 atomic regions from SNP 43340 to 43940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,448 DEBUG Processing 43/676 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,518 DEBUG Processing 420/723 atomic regions from SNP 125754 to 126354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,621 DEBUG Processing 146/704 atomic regions from SNP 43640 to 44240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,668 DEBUG Processing 44/676 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,745 DEBUG Processing 421/723 atomic regions from SNP 126054 to 126654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,828 DEBUG Processing 147/704 atomic regions from SNP 43940 to 44540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,884 DEBUG Processing 45/676 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,969 DEBUG Processing 422/723 atomic regions from SNP 126354 to 126954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,035 DEBUG Processing 148/704 atomic regions from SNP 44240 to 44840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,100 DEBUG Processing 46/676 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,188 DEBUG Processing 423/723 atomic regions from SNP 126654 to 127254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,237 DEBUG Processing 149/704 atomic regions from SNP 44540 to 45140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,321 DEBUG Processing 47/676 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,404 DEBUG Processing 424/723 atomic regions from SNP 126954 to 127554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,438 DEBUG Processing 150/704 atomic regions from SNP 44840 to 45440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,541 DEBUG Processing 48/676 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,630 DEBUG Processing 425/723 atomic regions from SNP 127254 to 127854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,643 DEBUG Processing 151/704 atomic regions from SNP 45140 to 45740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,762 DEBUG Processing 49/676 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,847 DEBUG Processing 152/704 atomic regions from SNP 45440 to 46040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,852 DEBUG Processing 426/723 atomic regions from SNP 127554 to 128154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,978 DEBUG Processing 50/676 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,053 DEBUG Processing 153/704 atomic regions from SNP 45740 to 46340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,082 DEBUG Processing 427/723 atomic regions from SNP 127854 to 128454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,198 DEBUG Processing 51/676 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,272 DEBUG Processing 154/704 atomic regions from SNP 46040 to 46640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,308 DEBUG Processing 428/723 atomic regions from SNP 128154 to 128754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,417 DEBUG Processing 52/676 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,475 DEBUG Processing 155/704 atomic regions from SNP 46340 to 46940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,535 DEBUG Processing 429/723 atomic regions from SNP 128454 to 129054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,641 DEBUG Processing 53/676 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,676 DEBUG Processing 156/704 atomic regions from SNP 46640 to 47240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,760 DEBUG Processing 430/723 atomic regions from SNP 128754 to 129354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,868 DEBUG Processing 54/676 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,877 DEBUG Processing 157/704 atomic regions from SNP 46940 to 47540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,982 DEBUG Processing 431/723 atomic regions from SNP 129054 to 129654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,081 DEBUG Processing 158/704 atomic regions from SNP 47240 to 47840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,111 DEBUG Processing 55/676 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,204 DEBUG Processing 432/723 atomic regions from SNP 129354 to 129954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,290 DEBUG Processing 159/704 atomic regions from SNP 47540 to 48140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,323 DEBUG Processing 56/676 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,420 DEBUG Processing 433/723 atomic regions from SNP 129654 to 130254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,498 DEBUG Processing 160/704 atomic regions from SNP 47840 to 48440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,532 DEBUG Processing 57/676 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,653 DEBUG Processing 434/723 atomic regions from SNP 129954 to 130554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,708 DEBUG Processing 161/704 atomic regions from SNP 48140 to 48740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,739 DEBUG Processing 58/676 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,902 DEBUG Processing 435/723 atomic regions from SNP 130254 to 130854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,921 DEBUG Processing 162/704 atomic regions from SNP 48440 to 49040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,955 DEBUG Processing 59/676 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,144 DEBUG Processing 163/704 atomic regions from SNP 48740 to 49340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,144 DEBUG Processing 436/723 atomic regions from SNP 130554 to 131154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,176 DEBUG Processing 60/676 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,365 DEBUG Processing 437/723 atomic regions from SNP 130854 to 131454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,372 DEBUG Processing 164/704 atomic regions from SNP 49040 to 49640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,417 DEBUG Processing 61/676 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,575 DEBUG Processing 165/704 atomic regions from SNP 49340 to 49940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,586 DEBUG Processing 438/723 atomic regions from SNP 131154 to 131754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,659 DEBUG Processing 62/676 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,808 DEBUG Processing 166/704 atomic regions from SNP 49640 to 50240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,809 DEBUG Processing 439/723 atomic regions from SNP 131454 to 132054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,880 DEBUG Processing 63/676 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,028 DEBUG Processing 167/704 atomic regions from SNP 49940 to 50540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,030 DEBUG Processing 440/723 atomic regions from SNP 131754 to 132354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,098 DEBUG Processing 64/676 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,116 DEBUG Subchromosome time: 171.2001712829806, subchromosome SNPs: 199570 2025-01-31 09:52:51,117 DEBUG Estimated BADs: [0.29, 1.18, 4.71, 1.18, 2.35, 1.18, 0.39, 1.18, 2.35, 5.88, 2.35, 1.18, 2.35, 1.18, 2.35, 0.29, 1.18, 0.29, 0.59, 0.29, 0.59, 3.53, 1.18] SNP counts: [161, 21134, 4095, 13952, 10162, 3630, 6084, 12716, 4929, 2369, 27884, 5403, 5106, 4230, 1469, 9544, 4830, 14408, 16817, 11389, 13346, 1397, 4676] SNP IDs counts: [161, 21134, 4095, 13952, 10162, 3630, 6084, 12716, 4929, 2369, 27884, 5403, 5106, 4230, 1469, 9544, 4830, 14408, 16817, 11389, 13346, 1397, 4676] Critical gap: 622224bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.13Mbp[0.71Mbp], 19.70Mbp, 21.85Mbp, 29.84Mbp, 35.24Mbp, 37.32Mbp, 40.90Mbp, 50.78Mbp, 54.36Mbp, 55.62Mbp, 71.16Mbp, 74.23Mbp, 76.97Mbp, 79.29Mbp, 80.08Mbp, 85.91Mbp, 88.71Mbp, 97.31Mbp, 106.84Mbp, 113.70Mbp, 121.26Mbp, 121.99Mbp, 124.90Mbp] 2025-01-31 09:52:51,117 DEBUG chr14 time: 171.2006321059307 s 2025-01-31 09:52:51,232 DEBUG Processing 168/704 atomic regions from SNP 50240 to 50840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,249 DEBUG chr14: Fitting background model for 23 segments 2025-01-31 09:52:51,250 DEBUG Processing 441/723 atomic regions from SNP 132054 to 132654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,318 DEBUG Processing 65/676 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,435 DEBUG Processing 169/704 atomic regions from SNP 50540 to 51140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,475 DEBUG Processing 442/723 atomic regions from SNP 132354 to 132954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,547 DEBUG Processing 66/676 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,638 DEBUG Processing 170/704 atomic regions from SNP 50840 to 51440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,703 DEBUG Processing 443/723 atomic regions from SNP 132654 to 133254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,770 DEBUG Processing 67/676 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,844 DEBUG Processing 171/704 atomic regions from SNP 51140 to 51740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,932 DEBUG Processing 444/723 atomic regions from SNP 132954 to 133554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,993 DEBUG Processing 68/676 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,048 DEBUG Processing 172/704 atomic regions from SNP 51440 to 52040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,162 DEBUG Processing 445/723 atomic regions from SNP 133254 to 133854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,218 DEBUG Processing 69/676 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,251 DEBUG Processing 173/704 atomic regions from SNP 51740 to 52340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,390 DEBUG Processing 446/723 atomic regions from SNP 133554 to 134154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,440 DEBUG Processing 70/676 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,451 DEBUG Processing 174/704 atomic regions from SNP 52040 to 52640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,616 DEBUG Processing 447/723 atomic regions from SNP 133854 to 134454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,653 DEBUG Processing 175/704 atomic regions from SNP 52340 to 52940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,666 DEBUG Processing 71/676 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,847 DEBUG Processing 448/723 atomic regions from SNP 134154 to 134754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,863 DEBUG Processing 176/704 atomic regions from SNP 52640 to 53240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,891 DEBUG Processing 72/676 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,067 DEBUG Processing 177/704 atomic regions from SNP 52940 to 53540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,075 DEBUG Processing 449/723 atomic regions from SNP 134454 to 135054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,127 DEBUG Processing 73/676 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,277 DEBUG Processing 178/704 atomic regions from SNP 53240 to 53840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,314 DEBUG Processing 450/723 atomic regions from SNP 134754 to 135354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,350 DEBUG Processing 74/676 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,485 DEBUG Processing 179/704 atomic regions from SNP 53540 to 54140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,560 DEBUG Processing 451/723 atomic regions from SNP 135054 to 135654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,575 DEBUG Processing 75/676 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,700 DEBUG Processing 180/704 atomic regions from SNP 53840 to 54440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,806 DEBUG Processing 452/723 atomic regions from SNP 135354 to 135954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,807 DEBUG Processing 76/676 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,907 DEBUG Processing 181/704 atomic regions from SNP 54140 to 54740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,045 DEBUG Processing 77/676 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,070 DEBUG Processing 453/723 atomic regions from SNP 135654 to 136254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,117 DEBUG Processing 182/704 atomic regions from SNP 54440 to 55040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,282 DEBUG Processing 78/676 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,316 DEBUG Processing 454/723 atomic regions from SNP 135954 to 136554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,329 DEBUG Processing 183/704 atomic regions from SNP 54740 to 55340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,520 DEBUG Processing 79/676 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,542 DEBUG Processing 184/704 atomic regions from SNP 55040 to 55640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,557 DEBUG Processing 455/723 atomic regions from SNP 136254 to 136854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,754 DEBUG Processing 80/676 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,759 DEBUG Processing 185/704 atomic regions from SNP 55340 to 55940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,795 DEBUG Processing 456/723 atomic regions from SNP 136554 to 137154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,969 DEBUG Processing 186/704 atomic regions from SNP 55640 to 56240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,985 DEBUG Processing 81/676 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,028 DEBUG Processing 457/723 atomic regions from SNP 136854 to 137454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,169 DEBUG Processing 187/704 atomic regions from SNP 55940 to 56540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,213 DEBUG Processing 82/676 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,263 DEBUG Processing 458/723 atomic regions from SNP 137154 to 137754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,367 DEBUG Processing 188/704 atomic regions from SNP 56240 to 56840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,444 DEBUG Processing 83/676 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,496 DEBUG Processing 459/723 atomic regions from SNP 137454 to 138054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,565 DEBUG Processing 189/704 atomic regions from SNP 56540 to 57140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,678 DEBUG Processing 84/676 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,726 DEBUG Processing 460/723 atomic regions from SNP 137754 to 138354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,764 DEBUG Processing 190/704 atomic regions from SNP 56840 to 57440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,908 DEBUG Processing 85/676 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,961 DEBUG Processing 461/723 atomic regions from SNP 138054 to 138654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,972 DEBUG Processing 191/704 atomic regions from SNP 57140 to 57740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,137 DEBUG Processing 86/676 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,183 DEBUG Processing 192/704 atomic regions from SNP 57440 to 58040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,195 DEBUG Processing 462/723 atomic regions from SNP 138354 to 138954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,359 DEBUG Processing 87/676 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,394 DEBUG Processing 193/704 atomic regions from SNP 57740 to 58340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,424 DEBUG Processing 463/723 atomic regions from SNP 138654 to 139254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,585 DEBUG Processing 88/676 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,603 DEBUG Processing 194/704 atomic regions from SNP 58040 to 58640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,655 DEBUG Processing 464/723 atomic regions from SNP 138954 to 139554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,813 DEBUG Processing 89/676 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,814 DEBUG Processing 195/704 atomic regions from SNP 58340 to 58940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,884 DEBUG Processing 465/723 atomic regions from SNP 139254 to 139854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,027 DEBUG Processing 196/704 atomic regions from SNP 58640 to 59240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,039 DEBUG Processing 90/676 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,119 DEBUG Processing 466/723 atomic regions from SNP 139554 to 140154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,234 DEBUG Processing 197/704 atomic regions from SNP 58940 to 59540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,260 DEBUG Processing 91/676 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,353 DEBUG Processing 467/723 atomic regions from SNP 139854 to 140454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,442 DEBUG Processing 198/704 atomic regions from SNP 59240 to 59840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,485 DEBUG Processing 92/676 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,587 DEBUG Processing 468/723 atomic regions from SNP 140154 to 140754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,645 DEBUG Processing 199/704 atomic regions from SNP 59540 to 60140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,709 DEBUG Processing 93/676 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,820 DEBUG Processing 469/723 atomic regions from SNP 140454 to 141054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,854 DEBUG Processing 200/704 atomic regions from SNP 59840 to 60440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,931 DEBUG Processing 94/676 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,052 DEBUG Processing 470/723 atomic regions from SNP 140754 to 141354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,062 DEBUG Processing 201/704 atomic regions from SNP 60140 to 60740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,152 DEBUG Processing 95/676 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,280 DEBUG Processing 202/704 atomic regions from SNP 60440 to 61040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,280 DEBUG Processing 471/723 atomic regions from SNP 141054 to 141654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,373 DEBUG Processing 96/676 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,489 DEBUG Processing 203/704 atomic regions from SNP 60740 to 61340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,511 DEBUG Processing 472/723 atomic regions from SNP 141354 to 141954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,588 DEBUG Segmenting atomic regions: 2025-01-31 09:52:58,596 DEBUG Processing 97/676 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,672 DEBUG Processing 1/661 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:58,694 DEBUG Processing 204/704 atomic regions from SNP 61040 to 61640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,741 DEBUG Processing 473/723 atomic regions from SNP 141654 to 142254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,821 DEBUG Processing 98/676 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,883 DEBUG Processing 2/661 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:58,909 DEBUG Processing 205/704 atomic regions from SNP 61340 to 61940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,968 DEBUG Processing 474/723 atomic regions from SNP 141954 to 142554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,048 DEBUG Processing 99/676 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,099 DEBUG Processing 3/661 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:59,121 DEBUG Processing 206/704 atomic regions from SNP 61640 to 62240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,199 DEBUG Processing 475/723 atomic regions from SNP 142254 to 142854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,271 DEBUG Processing 100/676 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,305 DEBUG Processing 4/661 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:59,334 DEBUG Processing 207/704 atomic regions from SNP 61940 to 62540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,427 DEBUG Processing 476/723 atomic regions from SNP 142554 to 143154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,504 DEBUG Processing 101/676 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,520 DEBUG Processing 5/661 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:59,552 DEBUG Processing 208/704 atomic regions from SNP 62240 to 62840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,654 DEBUG Processing 477/723 atomic regions from SNP 142854 to 143454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,737 DEBUG Processing 102/676 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,743 DEBUG Processing 6/661 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:59,771 DEBUG Processing 209/704 atomic regions from SNP 62540 to 63140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,879 DEBUG Processing 478/723 atomic regions from SNP 143154 to 143754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,961 DEBUG Processing 7/661 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:59,988 DEBUG Processing 210/704 atomic regions from SNP 62840 to 63440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,995 DEBUG Processing 103/676 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,112 DEBUG Processing 479/723 atomic regions from SNP 143454 to 144054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,175 DEBUG Processing 8/661 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:00,206 DEBUG Processing 211/704 atomic regions from SNP 63140 to 63740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,257 DEBUG Processing 104/676 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,340 DEBUG Processing 480/723 atomic regions from SNP 143754 to 144354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,374 DEBUG Processing 9/661 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:00,413 DEBUG Processing 212/704 atomic regions from SNP 63440 to 64040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,505 DEBUG Processing 105/676 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,569 DEBUG Processing 481/723 atomic regions from SNP 144054 to 144654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,571 DEBUG Processing 10/661 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:00,623 DEBUG Processing 213/704 atomic regions from SNP 63740 to 64340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,756 DEBUG Processing 106/676 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,796 DEBUG Processing 11/661 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:00,803 DEBUG Processing 482/723 atomic regions from SNP 144354 to 144954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,839 DEBUG Processing 214/704 atomic regions from SNP 64040 to 64640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,022 DEBUG Processing 107/676 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,032 DEBUG Processing 12/661 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:01,041 DEBUG Processing 483/723 atomic regions from SNP 144654 to 145254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,058 DEBUG Processing 215/704 atomic regions from SNP 64340 to 64940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,245 DEBUG Processing 13/661 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:01,278 DEBUG Processing 216/704 atomic regions from SNP 64640 to 65240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,281 DEBUG Processing 484/723 atomic regions from SNP 144954 to 145554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,284 DEBUG Processing 108/676 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,458 DEBUG Processing 14/661 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:01,499 DEBUG Processing 217/704 atomic regions from SNP 64940 to 65540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,519 DEBUG Processing 485/723 atomic regions from SNP 145254 to 145854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,530 DEBUG Processing 109/676 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,668 DEBUG Processing 15/661 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:01,724 DEBUG Processing 218/704 atomic regions from SNP 65240 to 65840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,754 DEBUG Processing 486/723 atomic regions from SNP 145554 to 146154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,761 DEBUG Processing 110/676 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,883 DEBUG Processing 16/661 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:01,952 DEBUG Processing 219/704 atomic regions from SNP 65540 to 66140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,991 DEBUG Processing 111/676 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,991 DEBUG Processing 487/723 atomic regions from SNP 145854 to 146454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,089 DEBUG Processing 17/661 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:02,167 DEBUG Processing 220/704 atomic regions from SNP 65840 to 66440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,221 DEBUG Processing 112/676 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,223 DEBUG Processing 488/723 atomic regions from SNP 146154 to 146754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,291 DEBUG Processing 18/661 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:02,387 DEBUG Processing 221/704 atomic regions from SNP 66140 to 66740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,445 DEBUG Processing 113/676 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,454 DEBUG Processing 489/723 atomic regions from SNP 146454 to 147054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,493 DEBUG Processing 19/661 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:02,597 DEBUG Processing 222/704 atomic regions from SNP 66440 to 67040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,684 DEBUG Processing 490/723 atomic regions from SNP 146754 to 147354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,695 DEBUG Processing 114/676 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,699 DEBUG Processing 20/661 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:02,814 DEBUG Processing 223/704 atomic regions from SNP 66740 to 67340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,904 DEBUG Processing 21/661 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:02,910 DEBUG Processing 491/723 atomic regions from SNP 147054 to 147654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,944 DEBUG Processing 115/676 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,027 DEBUG Processing 224/704 atomic regions from SNP 67040 to 67640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,114 DEBUG Processing 22/661 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:03,136 DEBUG Processing 492/723 atomic regions from SNP 147354 to 147954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,195 DEBUG Processing 116/676 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,243 DEBUG Processing 225/704 atomic regions from SNP 67340 to 67940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,326 DEBUG Processing 23/661 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:03,361 DEBUG Processing 493/723 atomic regions from SNP 147654 to 148254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,446 DEBUG Processing 117/676 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,454 DEBUG Processing 226/704 atomic regions from SNP 67640 to 68240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,531 DEBUG Processing 24/661 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:03,582 DEBUG Processing 494/723 atomic regions from SNP 147954 to 148554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,660 DEBUG Processing 227/704 atomic regions from SNP 67940 to 68540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,671 DEBUG Processing 118/676 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,734 DEBUG Processing 25/661 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:03,804 DEBUG Processing 495/723 atomic regions from SNP 148254 to 148854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,867 DEBUG Processing 228/704 atomic regions from SNP 68240 to 68840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,891 DEBUG Processing 119/676 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,941 DEBUG Processing 26/661 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:04,026 DEBUG Processing 496/723 atomic regions from SNP 148554 to 149154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,074 DEBUG Processing 229/704 atomic regions from SNP 68540 to 69140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,137 DEBUG Processing 120/676 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,150 DEBUG Processing 27/661 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:04,245 DEBUG Processing 497/723 atomic regions from SNP 148854 to 149454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,273 DEBUG Processing 230/704 atomic regions from SNP 68840 to 69440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,351 DEBUG Processing 28/661 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:04,368 DEBUG Processing 121/676 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,464 DEBUG Processing 498/723 atomic regions from SNP 149154 to 149754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,476 DEBUG Processing 231/704 atomic regions from SNP 69140 to 69740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,552 DEBUG Processing 29/661 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:04,613 DEBUG Processing 122/676 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,681 DEBUG Processing 232/704 atomic regions from SNP 69440 to 70040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,687 DEBUG Processing 499/723 atomic regions from SNP 149454 to 150054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,749 DEBUG Processing 30/661 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:04,860 DEBUG Processing 123/676 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,891 DEBUG Processing 233/704 atomic regions from SNP 69740 to 70340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,907 DEBUG Processing 500/723 atomic regions from SNP 149754 to 150354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,950 DEBUG Processing 31/661 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:05,099 DEBUG Processing 234/704 atomic regions from SNP 70040 to 70640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,108 DEBUG Processing 124/676 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,134 DEBUG Processing 501/723 atomic regions from SNP 150054 to 150654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,148 DEBUG Processing 32/661 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:05,305 DEBUG Processing 235/704 atomic regions from SNP 70340 to 70940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,336 DEBUG Processing 125/676 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,353 DEBUG Processing 33/661 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:05,357 DEBUG Processing 502/723 atomic regions from SNP 150354 to 150954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,508 DEBUG Processing 236/704 atomic regions from SNP 70640 to 71240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,557 DEBUG Processing 126/676 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,562 DEBUG Processing 34/661 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:05,581 DEBUG Processing 503/723 atomic regions from SNP 150654 to 151254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,713 DEBUG Processing 237/704 atomic regions from SNP 70940 to 71540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,761 DEBUG Processing 35/661 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:05,772 DEBUG Processing 127/676 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,803 DEBUG Processing 504/723 atomic regions from SNP 150954 to 151554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,916 DEBUG Processing 238/704 atomic regions from SNP 71240 to 71840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,958 DEBUG Processing 36/661 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:05,988 DEBUG Processing 128/676 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,027 DEBUG Processing 505/723 atomic regions from SNP 151254 to 151854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,116 DEBUG Processing 239/704 atomic regions from SNP 71540 to 72140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,161 DEBUG Processing 37/661 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:06,220 DEBUG Processing 129/676 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,262 DEBUG Processing 506/723 atomic regions from SNP 151554 to 152154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,319 DEBUG Processing 240/704 atomic regions from SNP 71840 to 72440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,365 DEBUG Processing 38/661 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:06,440 DEBUG Processing 130/676 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,493 DEBUG Processing 507/723 atomic regions from SNP 151854 to 152454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,532 DEBUG Processing 241/704 atomic regions from SNP 72140 to 72740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,569 DEBUG Processing 39/661 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:06,654 DEBUG Processing 131/676 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,716 DEBUG Processing 508/723 atomic regions from SNP 152154 to 152754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,746 DEBUG Processing 242/704 atomic regions from SNP 72440 to 73040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,774 DEBUG Processing 40/661 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:06,865 DEBUG Processing 132/676 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,942 DEBUG Processing 509/723 atomic regions from SNP 152454 to 153054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,956 DEBUG Processing 243/704 atomic regions from SNP 72740 to 73340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,980 DEBUG Processing 41/661 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:07,077 DEBUG Processing 133/676 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,159 DEBUG Processing 510/723 atomic regions from SNP 152754 to 153354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,166 DEBUG Processing 244/704 atomic regions from SNP 73040 to 73640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,183 DEBUG Processing 42/661 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:07,291 DEBUG Processing 134/676 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,372 DEBUG Processing 245/704 atomic regions from SNP 73340 to 73940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,376 DEBUG Processing 511/723 atomic regions from SNP 153054 to 153654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,381 DEBUG Processing 43/661 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:07,520 DEBUG Processing 135/676 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,576 DEBUG Processing 246/704 atomic regions from SNP 73640 to 74240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,578 DEBUG Processing 44/661 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:07,591 DEBUG Processing 512/723 atomic regions from SNP 153354 to 153954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,736 DEBUG Processing 136/676 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,777 DEBUG Processing 45/661 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:07,783 DEBUG Processing 247/704 atomic regions from SNP 73940 to 74540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,804 DEBUG Processing 513/723 atomic regions from SNP 153654 to 154254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,955 DEBUG Processing 137/676 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,976 DEBUG Processing 46/661 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:07,987 DEBUG Processing 248/704 atomic regions from SNP 74240 to 74840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,018 DEBUG Processing 514/723 atomic regions from SNP 153954 to 154554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,178 DEBUG Processing 138/676 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,180 DEBUG Processing 47/661 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:08,195 DEBUG Processing 249/704 atomic regions from SNP 74540 to 75140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,236 DEBUG Processing 515/723 atomic regions from SNP 154254 to 154854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,391 DEBUG Processing 48/661 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:08,397 DEBUG Processing 139/676 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,408 DEBUG Processing 250/704 atomic regions from SNP 74840 to 75440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,459 DEBUG Processing 516/723 atomic regions from SNP 154554 to 155154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,598 DEBUG Processing 49/661 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:08,626 DEBUG Processing 251/704 atomic regions from SNP 75140 to 75740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,628 DEBUG Processing 140/676 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,678 DEBUG Processing 517/723 atomic regions from SNP 154854 to 155454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,801 DEBUG Processing 50/661 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:08,831 DEBUG Processing 252/704 atomic regions from SNP 75440 to 76040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,843 DEBUG Processing 141/676 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,901 DEBUG Processing 518/723 atomic regions from SNP 155154 to 155754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,006 DEBUG Processing 51/661 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:09,034 DEBUG Processing 253/704 atomic regions from SNP 75740 to 76340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,055 DEBUG Processing 142/676 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,122 DEBUG Processing 519/723 atomic regions from SNP 155454 to 156054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,215 DEBUG Processing 52/661 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:09,239 DEBUG Processing 254/704 atomic regions from SNP 76040 to 76640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,265 DEBUG Processing 143/676 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,345 DEBUG Processing 520/723 atomic regions from SNP 155754 to 156354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,422 DEBUG Processing 53/661 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:09,448 DEBUG Processing 255/704 atomic regions from SNP 76340 to 76940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,479 DEBUG Processing 144/676 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,566 DEBUG Processing 521/723 atomic regions from SNP 156054 to 156654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,629 DEBUG Processing 54/661 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:09,666 DEBUG Processing 256/704 atomic regions from SNP 76640 to 77240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,692 DEBUG Processing 145/676 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,784 DEBUG Processing 522/723 atomic regions from SNP 156354 to 156954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,838 DEBUG Processing 55/661 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:09,875 DEBUG Processing 257/704 atomic regions from SNP 76940 to 77540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,903 DEBUG Processing 146/676 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,004 DEBUG Processing 523/723 atomic regions from SNP 156654 to 157254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,046 DEBUG Processing 56/661 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:10,084 DEBUG Processing 258/704 atomic regions from SNP 77240 to 77840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,115 DEBUG Processing 147/676 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,225 DEBUG Processing 524/723 atomic regions from SNP 156954 to 157554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,254 DEBUG Processing 57/661 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:10,291 DEBUG Processing 259/704 atomic regions from SNP 77540 to 78140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,324 DEBUG Processing 148/676 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,438 DEBUG Processing 525/723 atomic regions from SNP 157254 to 157854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,459 DEBUG Processing 58/661 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:10,500 DEBUG Processing 260/704 atomic regions from SNP 77840 to 78440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,534 DEBUG Processing 149/676 atomic regions from SNP 44548 to 45149 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,656 DEBUG Processing 526/723 atomic regions from SNP 157554 to 158154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,665 DEBUG Processing 59/661 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:10,711 DEBUG Processing 261/704 atomic regions from SNP 78140 to 78740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,742 DEBUG Processing 150/676 atomic regions from SNP 44849 to 45450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,868 DEBUG Processing 60/661 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:10,876 DEBUG Processing 527/723 atomic regions from SNP 157854 to 158454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,944 DEBUG Processing 262/704 atomic regions from SNP 78440 to 79040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,951 DEBUG Processing 151/676 atomic regions from SNP 45150 to 45751 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,069 DEBUG Processing 61/661 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:11,092 DEBUG Processing 528/723 atomic regions from SNP 158154 to 158754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,165 DEBUG Processing 263/704 atomic regions from SNP 78740 to 79340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,167 DEBUG Processing 152/676 atomic regions from SNP 45451 to 46052 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,268 DEBUG Processing 62/661 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:11,308 DEBUG Processing 529/723 atomic regions from SNP 158454 to 159054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,371 DEBUG Processing 264/704 atomic regions from SNP 79040 to 79640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,389 DEBUG Processing 153/676 atomic regions from SNP 45752 to 46353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,465 DEBUG Processing 63/661 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:11,530 DEBUG Processing 530/723 atomic regions from SNP 158754 to 159354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,577 DEBUG Processing 265/704 atomic regions from SNP 79340 to 79940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,637 DEBUG Processing 154/676 atomic regions from SNP 46053 to 46654 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,663 DEBUG Processing 64/661 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:11,750 DEBUG Processing 531/723 atomic regions from SNP 159054 to 159654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,784 DEBUG Processing 266/704 atomic regions from SNP 79640 to 80240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,856 DEBUG Processing 155/676 atomic regions from SNP 46354 to 46955 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,861 DEBUG Processing 65/661 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:11,967 DEBUG Processing 532/723 atomic regions from SNP 159354 to 159954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,995 DEBUG Processing 267/704 atomic regions from SNP 79940 to 80540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,062 DEBUG Processing 66/661 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:12,095 DEBUG Processing 156/676 atomic regions from SNP 46655 to 47256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,190 DEBUG Processing 533/723 atomic regions from SNP 159654 to 160254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,204 DEBUG Processing 268/704 atomic regions from SNP 80240 to 80840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,263 DEBUG Processing 67/661 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:12,313 DEBUG Processing 157/676 atomic regions from SNP 46956 to 47557 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,412 DEBUG Processing 534/723 atomic regions from SNP 159954 to 160554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,422 DEBUG Processing 269/704 atomic regions from SNP 80540 to 81140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,468 DEBUG Processing 68/661 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:12,534 DEBUG Processing 158/676 atomic regions from SNP 47257 to 47858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,639 DEBUG Processing 535/723 atomic regions from SNP 160254 to 160854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,667 DEBUG Processing 270/704 atomic regions from SNP 80840 to 81440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,687 DEBUG Processing 69/661 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:12,790 DEBUG Processing 159/676 atomic regions from SNP 47558 to 48159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,917 DEBUG Processing 536/723 atomic regions from SNP 160554 to 161154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,917 DEBUG Processing 271/704 atomic regions from SNP 81140 to 81740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,926 DEBUG Processing 70/661 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:13,073 DEBUG Processing 160/676 atomic regions from SNP 47859 to 48460 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,128 DEBUG Processing 272/704 atomic regions from SNP 81440 to 82040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,130 DEBUG Processing 71/661 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:13,151 DEBUG Processing 537/723 atomic regions from SNP 160854 to 161454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,315 DEBUG Processing 161/676 atomic regions from SNP 48160 to 48761 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,336 DEBUG Processing 72/661 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:13,341 DEBUG Processing 273/704 atomic regions from SNP 81740 to 82340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,385 DEBUG Processing 538/723 atomic regions from SNP 161154 to 161754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,541 DEBUG Processing 73/661 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:13,546 DEBUG Processing 162/676 atomic regions from SNP 48461 to 49062 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,551 DEBUG Processing 274/704 atomic regions from SNP 82040 to 82640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,616 DEBUG Processing 539/723 atomic regions from SNP 161454 to 162054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,746 DEBUG Processing 74/661 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:13,757 DEBUG Processing 275/704 atomic regions from SNP 82340 to 82940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,773 DEBUG Processing 163/676 atomic regions from SNP 48762 to 49363 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,845 DEBUG Processing 540/723 atomic regions from SNP 161754 to 162354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,954 DEBUG Processing 75/661 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:13,970 DEBUG Processing 276/704 atomic regions from SNP 82640 to 83240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,001 DEBUG Processing 164/676 atomic regions from SNP 49063 to 49664 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,078 DEBUG Processing 541/723 atomic regions from SNP 162054 to 162654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,168 DEBUG Processing 76/661 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:14,190 DEBUG Processing 277/704 atomic regions from SNP 82940 to 83540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,237 DEBUG Processing 165/676 atomic regions from SNP 49364 to 49965 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,319 DEBUG Processing 542/723 atomic regions from SNP 162354 to 162954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,392 DEBUG Processing 77/661 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:14,437 DEBUG Processing 278/704 atomic regions from SNP 83240 to 83840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,472 DEBUG Processing 166/676 atomic regions from SNP 49665 to 50266 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,542 DEBUG Processing 543/723 atomic regions from SNP 162654 to 163254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,599 DEBUG Processing 78/661 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:14,670 DEBUG Processing 279/704 atomic regions from SNP 83540 to 84140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,690 DEBUG Processing 167/676 atomic regions from SNP 49966 to 50567 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,764 DEBUG Processing 544/723 atomic regions from SNP 162954 to 163554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,802 DEBUG Processing 79/661 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:14,901 DEBUG Processing 280/704 atomic regions from SNP 83840 to 84440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,905 DEBUG Processing 168/676 atomic regions from SNP 50267 to 50868 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,982 DEBUG Processing 545/723 atomic regions from SNP 163254 to 163854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,995 DEBUG Processing 80/661 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:15,110 DEBUG Processing 281/704 atomic regions from SNP 84140 to 84740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,119 DEBUG Processing 169/676 atomic regions from SNP 50568 to 51169 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,192 DEBUG Processing 81/661 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:15,195 DEBUG Processing 546/723 atomic regions from SNP 163554 to 164154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,336 DEBUG Processing 282/704 atomic regions from SNP 84440 to 85040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,342 DEBUG Processing 170/676 atomic regions from SNP 50869 to 51470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,431 DEBUG Processing 547/723 atomic regions from SNP 163854 to 164454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,455 DEBUG Processing 82/661 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:15,635 DEBUG Processing 171/676 atomic regions from SNP 51170 to 51771 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,653 DEBUG Processing 283/704 atomic regions from SNP 84740 to 85340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,707 DEBUG Processing 548/723 atomic regions from SNP 164154 to 164754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,762 DEBUG Processing 83/661 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:15,870 DEBUG Processing 172/676 atomic regions from SNP 51471 to 52072 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,879 DEBUG Processing 284/704 atomic regions from SNP 85040 to 85640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,960 DEBUG Processing 549/723 atomic regions from SNP 164454 to 165054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,968 DEBUG Processing 84/661 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:16,089 DEBUG Processing 285/704 atomic regions from SNP 85340 to 85940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,091 DEBUG Processing 173/676 atomic regions from SNP 51772 to 52373 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,172 DEBUG Processing 85/661 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:16,193 DEBUG Processing 550/723 atomic regions from SNP 164754 to 165354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,296 DEBUG Processing 286/704 atomic regions from SNP 85640 to 86240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,302 DEBUG Processing 174/676 atomic regions from SNP 52073 to 52674 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,405 DEBUG Processing 86/661 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:16,414 DEBUG Processing 551/723 atomic regions from SNP 165054 to 165654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,500 DEBUG Processing 287/704 atomic regions from SNP 85940 to 86540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,510 DEBUG Processing 175/676 atomic regions from SNP 52374 to 52975 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,621 DEBUG Processing 87/661 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:16,629 DEBUG Processing 552/723 atomic regions from SNP 165354 to 165954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,701 DEBUG Processing 288/704 atomic regions from SNP 86240 to 86840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,727 DEBUG Processing 176/676 atomic regions from SNP 52675 to 53276 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,824 DEBUG Processing 88/661 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:16,859 DEBUG Processing 553/723 atomic regions from SNP 165654 to 166254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,913 DEBUG Processing 289/704 atomic regions from SNP 86540 to 87140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,962 DEBUG Processing 177/676 atomic regions from SNP 52976 to 53577 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,023 DEBUG Processing 89/661 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,085 DEBUG Processing 554/723 atomic regions from SNP 165954 to 166554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,139 DEBUG Processing 290/704 atomic regions from SNP 86840 to 87440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,195 DEBUG Processing 178/676 atomic regions from SNP 53277 to 53878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,227 DEBUG Processing 90/661 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,310 DEBUG Processing 555/723 atomic regions from SNP 166254 to 166854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,361 DEBUG Processing 291/704 atomic regions from SNP 87140 to 87740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,435 DEBUG Processing 91/661 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,441 DEBUG Processing 179/676 atomic regions from SNP 53578 to 54179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,553 DEBUG Processing 556/723 atomic regions from SNP 166554 to 167154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,576 DEBUG Processing 292/704 atomic regions from SNP 87440 to 88040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,645 DEBUG Processing 92/661 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,660 DEBUG Processing 180/676 atomic regions from SNP 53879 to 54480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,787 DEBUG Processing 557/723 atomic regions from SNP 166854 to 167454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,791 DEBUG Processing 293/704 atomic regions from SNP 87740 to 88340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,842 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:53:17,852 DEBUG Processing 93/661 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,875 DEBUG Processing 181/676 atomic regions from SNP 54180 to 54781 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,006 DEBUG Processing 294/704 atomic regions from SNP 88040 to 88640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,010 DEBUG Processing 558/723 atomic regions from SNP 167154 to 167754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,070 DEBUG Processing 94/661 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:18,095 DEBUG Processing 182/676 atomic regions from SNP 54481 to 55082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,215 DEBUG Processing 295/704 atomic regions from SNP 88340 to 88940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,229 DEBUG Processing 559/723 atomic regions from SNP 167454 to 168054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,280 DEBUG Processing 95/661 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:18,315 DEBUG Processing 183/676 atomic regions from SNP 54782 to 55383 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,428 DEBUG Processing 296/704 atomic regions from SNP 88640 to 89240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,452 DEBUG Processing 560/723 atomic regions from SNP 167754 to 168354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,497 DEBUG Processing 96/661 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:18,529 DEBUG Processing 184/676 atomic regions from SNP 55083 to 55684 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,633 DEBUG Processing 297/704 atomic regions from SNP 88940 to 89540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,669 DEBUG Processing 561/723 atomic regions from SNP 168054 to 168654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,699 DEBUG Processing 97/661 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:18,738 DEBUG Processing 185/676 atomic regions from SNP 55384 to 55985 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,855 DEBUG Processing 298/704 atomic regions from SNP 89240 to 89840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,890 DEBUG Processing 562/723 atomic regions from SNP 168354 to 168954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,915 DEBUG Processing 98/661 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:18,953 DEBUG Processing 186/676 atomic regions from SNP 55685 to 56286 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,075 DEBUG Processing 299/704 atomic regions from SNP 89540 to 90140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,104 DEBUG Processing 563/723 atomic regions from SNP 168654 to 169254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,116 DEBUG Processing 99/661 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:19,184 DEBUG Processing 187/676 atomic regions from SNP 55986 to 56587 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,278 DEBUG Processing 300/704 atomic regions from SNP 89840 to 90440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,313 DEBUG Processing 100/661 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:19,316 DEBUG Processing 564/723 atomic regions from SNP 168954 to 169554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,402 DEBUG Processing 188/676 atomic regions from SNP 56287 to 56888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,489 DEBUG Processing 301/704 atomic regions from SNP 90140 to 90740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,508 DEBUG Processing 101/661 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:19,531 DEBUG Processing 565/723 atomic regions from SNP 169254 to 169854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,621 DEBUG Processing 189/676 atomic regions from SNP 56588 to 57189 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,708 DEBUG Processing 302/704 atomic regions from SNP 90440 to 91040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,725 DEBUG Processing 102/661 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:19,743 DEBUG Processing 566/723 atomic regions from SNP 169554 to 170154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,835 DEBUG Processing 190/676 atomic regions from SNP 56889 to 57490 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,912 DEBUG Processing 303/704 atomic regions from SNP 90740 to 91340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,958 DEBUG Processing 567/723 atomic regions from SNP 169854 to 170454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,960 DEBUG Processing 103/661 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,038 DEBUG Processing 191/676 atomic regions from SNP 57190 to 57791 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,120 DEBUG Processing 304/704 atomic regions from SNP 91040 to 91640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,178 DEBUG Processing 568/723 atomic regions from SNP 170154 to 170754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,192 DEBUG Processing 104/661 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,245 DEBUG Processing 192/676 atomic regions from SNP 57491 to 58092 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,326 DEBUG Processing 305/704 atomic regions from SNP 91340 to 91940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,363 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:53:20,396 DEBUG Processing 569/723 atomic regions from SNP 170454 to 171054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,410 DEBUG Processing 105/661 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,458 DEBUG Processing 193/676 atomic regions from SNP 57792 to 58393 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,532 DEBUG Processing 306/704 atomic regions from SNP 91640 to 92240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,609 DEBUG Processing 106/661 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,615 DEBUG Processing 570/723 atomic regions from SNP 170754 to 171354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,673 DEBUG Processing 194/676 atomic regions from SNP 58093 to 58694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,736 DEBUG Processing 307/704 atomic regions from SNP 91940 to 92540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,801 DEBUG Processing 107/661 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,843 DEBUG Processing 571/723 atomic regions from SNP 171054 to 171654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,890 DEBUG Processing 195/676 atomic regions from SNP 58394 to 58995 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,944 DEBUG Processing 308/704 atomic regions from SNP 92240 to 92840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,994 DEBUG Processing 108/661 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,072 DEBUG Processing 572/723 atomic regions from SNP 171354 to 171954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,110 DEBUG Processing 196/676 atomic regions from SNP 58695 to 59296 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,151 DEBUG Processing 309/704 atomic regions from SNP 92540 to 93140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,192 DEBUG Processing 109/661 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,302 DEBUG Processing 573/723 atomic regions from SNP 171654 to 172254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,331 DEBUG Processing 197/676 atomic regions from SNP 58996 to 59597 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,360 DEBUG Processing 310/704 atomic regions from SNP 92840 to 93440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,386 DEBUG Processing 110/661 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,540 DEBUG Processing 574/723 atomic regions from SNP 171954 to 172554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,546 DEBUG Processing 198/676 atomic regions from SNP 59297 to 59898 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,573 DEBUG Processing 311/704 atomic regions from SNP 93140 to 93740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,591 DEBUG Processing 111/661 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,762 DEBUG Processing 575/723 atomic regions from SNP 172254 to 172854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,766 DEBUG Processing 199/676 atomic regions from SNP 59598 to 60199 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,780 DEBUG Processing 312/704 atomic regions from SNP 93440 to 94040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,796 DEBUG Processing 112/661 atomic regions from SNP 33411 to 34011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,988 DEBUG Processing 576/723 atomic regions from SNP 172554 to 173154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,994 DEBUG Processing 313/704 atomic regions from SNP 93740 to 94340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,004 DEBUG Processing 113/661 atomic regions from SNP 33711 to 34311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:22,015 DEBUG Processing 200/676 atomic regions from SNP 59899 to 60500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,208 DEBUG Processing 114/661 atomic regions from SNP 34011 to 34611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:22,208 DEBUG Processing 577/723 atomic regions from SNP 172854 to 173454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,213 DEBUG Processing 314/704 atomic regions from SNP 94040 to 94640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,260 DEBUG Processing 201/676 atomic regions from SNP 60200 to 60801 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,410 DEBUG Processing 115/661 atomic regions from SNP 34311 to 34911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:22,426 DEBUG Processing 578/723 atomic regions from SNP 173154 to 173754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,436 DEBUG Processing 315/704 atomic regions from SNP 94340 to 94940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,478 DEBUG Processing 202/676 atomic regions from SNP 60501 to 61102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,612 DEBUG Processing 116/661 atomic regions from SNP 34611 to 35211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:22,651 DEBUG Processing 579/723 atomic regions from SNP 173454 to 174054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,654 DEBUG Processing 316/704 atomic regions from SNP 94640 to 95240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,700 DEBUG Processing 203/676 atomic regions from SNP 60802 to 61403 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,812 DEBUG Processing 117/661 atomic regions from SNP 34911 to 35511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:22,883 DEBUG Processing 317/704 atomic regions from SNP 94940 to 95540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,889 DEBUG Processing 580/723 atomic regions from SNP 173754 to 174354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,924 DEBUG Processing 204/676 atomic regions from SNP 61103 to 61704 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,006 DEBUG Processing 118/661 atomic regions from SNP 35211 to 35811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,099 DEBUG Processing 318/704 atomic regions from SNP 95240 to 95840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,112 DEBUG Processing 581/723 atomic regions from SNP 174054 to 174654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,156 DEBUG Processing 205/676 atomic regions from SNP 61404 to 62005 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,197 DEBUG Processing 119/661 atomic regions from SNP 35511 to 36111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,329 DEBUG Processing 582/723 atomic regions from SNP 174354 to 174954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,329 DEBUG Processing 319/704 atomic regions from SNP 95540 to 96140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,368 DEBUG Processing 206/676 atomic regions from SNP 61705 to 62306 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,390 DEBUG Processing 120/661 atomic regions from SNP 35811 to 36411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,537 DEBUG Processing 320/704 atomic regions from SNP 95840 to 96440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,572 DEBUG Processing 583/723 atomic regions from SNP 174654 to 175254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,585 DEBUG Processing 207/676 atomic regions from SNP 62006 to 62607 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,589 DEBUG Processing 121/661 atomic regions from SNP 36111 to 36711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,742 DEBUG Processing 321/704 atomic regions from SNP 96140 to 96740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,793 DEBUG Processing 584/723 atomic regions from SNP 174954 to 175554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,794 DEBUG Processing 122/661 atomic regions from SNP 36411 to 37011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,804 DEBUG Processing 208/676 atomic regions from SNP 62307 to 62908 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,965 DEBUG Processing 322/704 atomic regions from SNP 96440 to 97040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,992 DEBUG Processing 123/661 atomic regions from SNP 36711 to 37311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,016 DEBUG Processing 585/723 atomic regions from SNP 175254 to 175854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,024 DEBUG Processing 209/676 atomic regions from SNP 62608 to 63209 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,193 DEBUG Processing 124/661 atomic regions from SNP 37011 to 37611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,198 DEBUG Processing 323/704 atomic regions from SNP 96740 to 97340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,242 DEBUG Processing 586/723 atomic regions from SNP 175554 to 176154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,248 DEBUG Processing 210/676 atomic regions from SNP 62909 to 63510 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,395 DEBUG Processing 125/661 atomic regions from SNP 37311 to 37911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,435 DEBUG Processing 324/704 atomic regions from SNP 97040 to 97640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,467 DEBUG Processing 587/723 atomic regions from SNP 175854 to 176454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,470 DEBUG Processing 211/676 atomic regions from SNP 63210 to 63811 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,599 DEBUG Processing 126/661 atomic regions from SNP 37611 to 38211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,659 DEBUG Processing 325/704 atomic regions from SNP 97340 to 97940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,685 DEBUG Processing 212/676 atomic regions from SNP 63511 to 64112 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,686 DEBUG Processing 588/723 atomic regions from SNP 176154 to 176754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,805 DEBUG Processing 127/661 atomic regions from SNP 37911 to 38511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,871 DEBUG Processing 326/704 atomic regions from SNP 97640 to 98240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,901 DEBUG Processing 213/676 atomic regions from SNP 63812 to 64413 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,905 DEBUG Processing 589/723 atomic regions from SNP 176454 to 177054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,021 DEBUG Processing 128/661 atomic regions from SNP 38211 to 38811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,076 DEBUG Processing 327/704 atomic regions from SNP 97940 to 98540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,108 DEBUG Processing 214/676 atomic regions from SNP 64113 to 64714 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,118 DEBUG Processing 590/723 atomic regions from SNP 176754 to 177354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,222 DEBUG Processing 129/661 atomic regions from SNP 38511 to 39111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,294 DEBUG Processing 328/704 atomic regions from SNP 98240 to 98840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,312 DEBUG Processing 215/676 atomic regions from SNP 64414 to 65015 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,329 DEBUG Processing 591/723 atomic regions from SNP 177054 to 177654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,419 DEBUG Processing 130/661 atomic regions from SNP 38811 to 39411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,519 DEBUG Processing 216/676 atomic regions from SNP 64715 to 65316 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,519 DEBUG Processing 329/704 atomic regions from SNP 98540 to 99140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,541 DEBUG Processing 592/723 atomic regions from SNP 177354 to 177954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,615 DEBUG Processing 131/661 atomic regions from SNP 39111 to 39711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,733 DEBUG Processing 217/676 atomic regions from SNP 65016 to 65617 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,751 DEBUG Processing 593/723 atomic regions from SNP 177654 to 178254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,760 DEBUG Processing 330/704 atomic regions from SNP 98840 to 99440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,808 DEBUG Processing 132/661 atomic regions from SNP 39411 to 40011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,942 DEBUG Processing 218/676 atomic regions from SNP 65317 to 65918 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,960 DEBUG Processing 594/723 atomic regions from SNP 177954 to 178554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,983 DEBUG Processing 331/704 atomic regions from SNP 99140 to 99740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,998 DEBUG Processing 133/661 atomic regions from SNP 39711 to 40311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,169 DEBUG Processing 595/723 atomic regions from SNP 178254 to 178854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,174 DEBUG Processing 219/676 atomic regions from SNP 65618 to 66219 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,186 DEBUG Processing 134/661 atomic regions from SNP 40011 to 40611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,195 DEBUG Processing 332/704 atomic regions from SNP 99440 to 100040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,378 DEBUG Processing 135/661 atomic regions from SNP 40311 to 40911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,386 DEBUG Processing 596/723 atomic regions from SNP 178554 to 179154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,390 DEBUG Processing 220/676 atomic regions from SNP 65919 to 66520 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,411 DEBUG Processing 333/704 atomic regions from SNP 99740 to 100340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,571 DEBUG Processing 136/661 atomic regions from SNP 40611 to 41211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,597 DEBUG Processing 221/676 atomic regions from SNP 66220 to 66821 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,616 DEBUG Processing 597/723 atomic regions from SNP 178854 to 179454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,635 DEBUG Processing 334/704 atomic regions from SNP 100040 to 100640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,765 DEBUG Processing 137/661 atomic regions from SNP 40911 to 41511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,801 DEBUG Processing 222/676 atomic regions from SNP 66521 to 67122 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,828 DEBUG Processing 598/723 atomic regions from SNP 179154 to 179754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,842 DEBUG Processing 335/704 atomic regions from SNP 100340 to 100940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,962 DEBUG Processing 138/661 atomic regions from SNP 41211 to 41811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,010 DEBUG Processing 223/676 atomic regions from SNP 66822 to 67423 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,039 DEBUG Processing 599/723 atomic regions from SNP 179454 to 180054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,051 DEBUG Processing 336/704 atomic regions from SNP 100640 to 101240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,154 DEBUG Processing 139/661 atomic regions from SNP 41511 to 42111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,213 DEBUG Processing 224/676 atomic regions from SNP 67123 to 67724 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,247 DEBUG Processing 600/723 atomic regions from SNP 179754 to 180354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,255 DEBUG Processing 337/704 atomic regions from SNP 100940 to 101540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,350 DEBUG Processing 140/661 atomic regions from SNP 41811 to 42411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,417 DEBUG Processing 225/676 atomic regions from SNP 67424 to 68025 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,452 DEBUG Processing 601/723 atomic regions from SNP 180054 to 180654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,455 DEBUG Processing 338/704 atomic regions from SNP 101240 to 101840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,546 DEBUG Processing 141/661 atomic regions from SNP 42111 to 42711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,624 DEBUG Processing 226/676 atomic regions from SNP 67725 to 68326 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,656 DEBUG Processing 339/704 atomic regions from SNP 101540 to 102140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,660 DEBUG Processing 602/723 atomic regions from SNP 180354 to 180954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,743 DEBUG Processing 142/661 atomic regions from SNP 42411 to 43011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,825 DEBUG Processing 227/676 atomic regions from SNP 68026 to 68627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,857 DEBUG Processing 340/704 atomic regions from SNP 101840 to 102440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,869 DEBUG Processing 603/723 atomic regions from SNP 180654 to 181254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,938 DEBUG Processing 143/661 atomic regions from SNP 42711 to 43311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,032 DEBUG Processing 228/676 atomic regions from SNP 68327 to 68928 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,057 DEBUG Processing 341/704 atomic regions from SNP 102140 to 102740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,083 DEBUG Processing 604/723 atomic regions from SNP 180954 to 181554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,135 DEBUG Processing 144/661 atomic regions from SNP 43011 to 43611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,238 DEBUG Processing 229/676 atomic regions from SNP 68628 to 69229 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,255 DEBUG Processing 342/704 atomic regions from SNP 102440 to 103040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,293 DEBUG Processing 605/723 atomic regions from SNP 181254 to 181854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,341 DEBUG Processing 145/661 atomic regions from SNP 43311 to 43911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,446 DEBUG Processing 230/676 atomic regions from SNP 68929 to 69530 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,456 DEBUG Processing 343/704 atomic regions from SNP 102740 to 103340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,504 DEBUG Processing 606/723 atomic regions from SNP 181554 to 182154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,544 DEBUG Processing 146/661 atomic regions from SNP 43611 to 44211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,650 DEBUG Processing 231/676 atomic regions from SNP 69230 to 69831 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,678 DEBUG Processing 344/704 atomic regions from SNP 103040 to 103640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,718 DEBUG Processing 607/723 atomic regions from SNP 181854 to 182454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,761 DEBUG Processing 147/661 atomic regions from SNP 43911 to 44511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,858 DEBUG Processing 232/676 atomic regions from SNP 69531 to 70132 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,895 DEBUG Processing 345/704 atomic regions from SNP 103340 to 103940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,933 DEBUG Processing 608/723 atomic regions from SNP 182154 to 182754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,990 DEBUG Processing 148/661 atomic regions from SNP 44211 to 44811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,084 DEBUG Processing 233/676 atomic regions from SNP 69832 to 70433 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,103 DEBUG Processing 346/704 atomic regions from SNP 103640 to 104240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,141 DEBUG Processing 609/723 atomic regions from SNP 182454 to 183054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,202 DEBUG Processing 149/661 atomic regions from SNP 44511 to 45111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,297 DEBUG Processing 234/676 atomic regions from SNP 70133 to 70734 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,310 DEBUG Processing 347/704 atomic regions from SNP 103940 to 104540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,352 DEBUG Processing 610/723 atomic regions from SNP 182754 to 183354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,411 DEBUG Processing 150/661 atomic regions from SNP 44811 to 45411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,521 DEBUG Processing 348/704 atomic regions from SNP 104240 to 104840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,533 DEBUG Processing 235/676 atomic regions from SNP 70434 to 71035 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,563 DEBUG Processing 611/723 atomic regions from SNP 183054 to 183654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,603 DEBUG Processing 151/661 atomic regions from SNP 45111 to 45711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,735 DEBUG Processing 349/704 atomic regions from SNP 104540 to 105140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,755 DEBUG Processing 236/676 atomic regions from SNP 70735 to 71336 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,783 DEBUG Processing 612/723 atomic regions from SNP 183354 to 183954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,801 DEBUG Processing 152/661 atomic regions from SNP 45411 to 46011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,943 DEBUG Processing 350/704 atomic regions from SNP 104840 to 105440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,969 DEBUG Processing 237/676 atomic regions from SNP 71036 to 71637 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,003 DEBUG Processing 613/723 atomic regions from SNP 183654 to 184254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,004 DEBUG Processing 153/661 atomic regions from SNP 45711 to 46311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,159 DEBUG Processing 351/704 atomic regions from SNP 105140 to 105740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,194 DEBUG Processing 238/676 atomic regions from SNP 71337 to 71938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,212 DEBUG Processing 154/661 atomic regions from SNP 46011 to 46611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,231 DEBUG Processing 614/723 atomic regions from SNP 183954 to 184554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,372 DEBUG Processing 352/704 atomic regions from SNP 105440 to 106040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,422 DEBUG Processing 239/676 atomic regions from SNP 71638 to 72238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,432 DEBUG Processing 155/661 atomic regions from SNP 46311 to 46911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,468 DEBUG Processing 615/723 atomic regions from SNP 184254 to 184854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,582 DEBUG Processing 353/704 atomic regions from SNP 105740 to 106340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,640 DEBUG Processing 240/676 atomic regions from SNP 71938 to 72538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,654 DEBUG Processing 156/661 atomic regions from SNP 46611 to 47211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,716 DEBUG Processing 616/723 atomic regions from SNP 184554 to 185154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,751 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:53:30,753 DEBUG chr15: Signal quantile: 0.987. signal threshold: 13. Best RMSEA: 0.011 2025-01-31 09:53:30,794 DEBUG Processing 354/704 atomic regions from SNP 106040 to 106640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,857 DEBUG Processing 157/661 atomic regions from SNP 46911 to 47511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,864 DEBUG Processing 241/676 atomic regions from SNP 72238 to 72838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,944 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:53:30,945 DEBUG chr16: Signal quantile: 0.992. signal threshold: 12. Best RMSEA: 0.016 2025-01-31 09:53:30,966 DEBUG Processing 617/723 atomic regions from SNP 184854 to 185454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,004 DEBUG Processing 355/704 atomic regions from SNP 106340 to 106940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,056 DEBUG Processing 158/661 atomic regions from SNP 47211 to 47811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,106 DEBUG Processing 242/676 atomic regions from SNP 72538 to 73138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,184 DEBUG Processing 618/723 atomic regions from SNP 185154 to 185754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,214 DEBUG Processing 356/704 atomic regions from SNP 106640 to 107240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,257 DEBUG Processing 159/661 atomic regions from SNP 47511 to 48111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,345 DEBUG Processing 243/676 atomic regions from SNP 72838 to 73438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,406 DEBUG Processing 619/723 atomic regions from SNP 185454 to 186054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,425 DEBUG Processing 357/704 atomic regions from SNP 106940 to 107540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,460 DEBUG Processing 160/661 atomic regions from SNP 47811 to 48411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,567 DEBUG Processing 244/676 atomic regions from SNP 73138 to 73738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,628 DEBUG Processing 620/723 atomic regions from SNP 185754 to 186354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,639 DEBUG Processing 358/704 atomic regions from SNP 107240 to 107840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,665 DEBUG Processing 161/661 atomic regions from SNP 48111 to 48711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,781 DEBUG Processing 245/676 atomic regions from SNP 73438 to 74038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,845 DEBUG Processing 621/723 atomic regions from SNP 186054 to 186654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,852 DEBUG Processing 359/704 atomic regions from SNP 107540 to 108140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,870 DEBUG Processing 162/661 atomic regions from SNP 48411 to 49011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,990 DEBUG Processing 246/676 atomic regions from SNP 73738 to 74338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,062 DEBUG Processing 360/704 atomic regions from SNP 107840 to 108440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,072 DEBUG Processing 163/661 atomic regions from SNP 48711 to 49311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,089 DEBUG Processing 622/723 atomic regions from SNP 186354 to 186954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,196 DEBUG Processing 247/676 atomic regions from SNP 74038 to 74638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,274 DEBUG Processing 361/704 atomic regions from SNP 108140 to 108740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,279 DEBUG Processing 164/661 atomic regions from SNP 49011 to 49611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,333 DEBUG Processing 623/723 atomic regions from SNP 186654 to 187254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,396 DEBUG Processing 248/676 atomic regions from SNP 74338 to 74938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,478 DEBUG Processing 165/661 atomic regions from SNP 49311 to 49911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,479 DEBUG Processing 362/704 atomic regions from SNP 108440 to 109040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,573 DEBUG Processing 624/723 atomic regions from SNP 186954 to 187554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,607 DEBUG Processing 249/676 atomic regions from SNP 74638 to 75238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,656 DEBUG chr15 total SNP count: 179223 2025-01-31 09:53:32,656 DEBUG chr15 length: 104043685 2025-01-31 09:53:32,656 DEBUG ----------------------------------------- 2025-01-31 09:53:32,656 INFO Processing SNPs in chr15 2025-01-31 09:53:32,676 DEBUG Processing 166/661 atomic regions from SNP 49611 to 50211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,685 DEBUG Processing 363/704 atomic regions from SNP 108740 to 109340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,729 DEBUG chr16 total SNP count: 168633 2025-01-31 09:53:32,729 DEBUG chr16 length: 98207768 2025-01-31 09:53:32,729 DEBUG ----------------------------------------- 2025-01-31 09:53:32,729 INFO Processing SNPs in chr16 2025-01-31 09:53:32,809 DEBUG Processing 625/723 atomic regions from SNP 187254 to 187854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,827 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 179223)] 2025-01-31 09:53:32,843 DEBUG Processing 250/676 atomic regions from SNP 74938 to 75538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,871 DEBUG Processing 167/661 atomic regions from SNP 49911 to 50511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,888 DEBUG Processing 364/704 atomic regions from SNP 109040 to 109640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,890 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 168633)] 2025-01-31 09:53:32,944 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:33,001 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:33,051 DEBUG Processing 626/723 atomic regions from SNP 187554 to 188154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,063 DEBUG Processing 251/676 atomic regions from SNP 75238 to 75838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,068 DEBUG Processing 168/661 atomic regions from SNP 50211 to 50811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,089 DEBUG Processing 365/704 atomic regions from SNP 109340 to 109940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,259 DEBUG Processing 169/661 atomic regions from SNP 50511 to 51111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,265 DEBUG Processing 252/676 atomic regions from SNP 75538 to 76138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,288 DEBUG Processing 366/704 atomic regions from SNP 109640 to 110240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,288 DEBUG Processing 627/723 atomic regions from SNP 187854 to 188454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,452 DEBUG Processing 170/661 atomic regions from SNP 50811 to 51411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,475 DEBUG Processing 253/676 atomic regions from SNP 75838 to 76438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,489 DEBUG Processing 367/704 atomic regions from SNP 109940 to 110540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,526 DEBUG Processing 628/723 atomic regions from SNP 188154 to 188754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,644 DEBUG Processing 171/661 atomic regions from SNP 51111 to 51711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,674 DEBUG Processing 254/676 atomic regions from SNP 76138 to 76738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,691 DEBUG Processing 368/704 atomic regions from SNP 110240 to 110840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,763 DEBUG Processing 629/723 atomic regions from SNP 188454 to 189054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,840 DEBUG Processing 172/661 atomic regions from SNP 51411 to 52011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,878 DEBUG Processing 255/676 atomic regions from SNP 76438 to 77038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,897 DEBUG Processing 369/704 atomic regions from SNP 110540 to 111140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,997 DEBUG Processing 630/723 atomic regions from SNP 188754 to 189354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,028 DEBUG Processing 173/661 atomic regions from SNP 51711 to 52311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,082 DEBUG Processing 256/676 atomic regions from SNP 76738 to 77338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,101 DEBUG Processing 370/704 atomic regions from SNP 110840 to 111440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,216 DEBUG Processing 174/661 atomic regions from SNP 52011 to 52611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,230 DEBUG Processing 631/723 atomic regions from SNP 189054 to 189654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,303 DEBUG Processing 257/676 atomic regions from SNP 77038 to 77638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,304 DEBUG Processing 371/704 atomic regions from SNP 111140 to 111740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,407 DEBUG Processing 175/661 atomic regions from SNP 52311 to 52911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,471 DEBUG Processing 632/723 atomic regions from SNP 189354 to 189954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,502 DEBUG Processing 372/704 atomic regions from SNP 111440 to 112040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,528 DEBUG Processing 258/676 atomic regions from SNP 77338 to 77938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,602 DEBUG Processing 176/661 atomic regions from SNP 52611 to 53211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,699 DEBUG Processing 633/723 atomic regions from SNP 189654 to 190254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,699 DEBUG Processing 373/704 atomic regions from SNP 111740 to 112340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,729 DEBUG Processing 259/676 atomic regions from SNP 77638 to 78238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,791 DEBUG Processing 177/661 atomic regions from SNP 52911 to 53511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,899 DEBUG Processing 374/704 atomic regions from SNP 112040 to 112640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,904 DEBUG Processing 634/723 atomic regions from SNP 189954 to 190554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,928 DEBUG Processing 260/676 atomic regions from SNP 77938 to 78538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,983 DEBUG Processing 178/661 atomic regions from SNP 53211 to 53811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,104 DEBUG Processing 375/704 atomic regions from SNP 112340 to 112940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,110 DEBUG Processing 635/723 atomic regions from SNP 190254 to 190854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,129 DEBUG Processing 261/676 atomic regions from SNP 78238 to 78838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,172 DEBUG Processing 179/661 atomic regions from SNP 53511 to 54111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,310 DEBUG Processing 376/704 atomic regions from SNP 112640 to 113240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,321 DEBUG Processing 636/723 atomic regions from SNP 190554 to 191154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,333 DEBUG Processing 262/676 atomic regions from SNP 78538 to 79138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,364 DEBUG Processing 180/661 atomic regions from SNP 53811 to 54411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,513 DEBUG Processing 377/704 atomic regions from SNP 112940 to 113540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,537 DEBUG Processing 263/676 atomic regions from SNP 78838 to 79438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,546 DEBUG Processing 637/723 atomic regions from SNP 190854 to 191454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,555 DEBUG Processing 181/661 atomic regions from SNP 54111 to 54711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,716 DEBUG Processing 378/704 atomic regions from SNP 113240 to 113840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,742 DEBUG Processing 264/676 atomic regions from SNP 79138 to 79738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,745 DEBUG Processing 182/661 atomic regions from SNP 54411 to 55011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,760 DEBUG Processing 638/723 atomic regions from SNP 191154 to 191754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,917 DEBUG Processing 379/704 atomic regions from SNP 113540 to 114140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,937 DEBUG Processing 183/661 atomic regions from SNP 54711 to 55311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,948 DEBUG Processing 265/676 atomic regions from SNP 79438 to 80038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,975 DEBUG Processing 639/723 atomic regions from SNP 191454 to 192054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,120 DEBUG Processing 380/704 atomic regions from SNP 113840 to 114440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,129 DEBUG Processing 184/661 atomic regions from SNP 55011 to 55611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,163 DEBUG Processing 266/676 atomic regions from SNP 79738 to 80338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,204 DEBUG Processing 640/723 atomic regions from SNP 191754 to 192354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,321 DEBUG Processing 381/704 atomic regions from SNP 114140 to 114740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,322 DEBUG Processing 185/661 atomic regions from SNP 55311 to 55911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,382 DEBUG Processing 267/676 atomic regions from SNP 80038 to 80638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,435 DEBUG Processing 641/723 atomic regions from SNP 192054 to 192654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,514 DEBUG Processing 186/661 atomic regions from SNP 55611 to 56211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,526 DEBUG Processing 382/704 atomic regions from SNP 114440 to 115040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,604 DEBUG Processing 268/676 atomic regions from SNP 80338 to 80938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,676 DEBUG Processing 642/723 atomic regions from SNP 192354 to 192954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,707 DEBUG Processing 187/661 atomic regions from SNP 55911 to 56511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,751 DEBUG Processing 383/704 atomic regions from SNP 114740 to 115340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,839 DEBUG Processing 269/676 atomic regions from SNP 80638 to 81238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,898 DEBUG Processing 188/661 atomic regions from SNP 56211 to 56811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,908 DEBUG Processing 643/723 atomic regions from SNP 192654 to 193254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,980 DEBUG Processing 384/704 atomic regions from SNP 115040 to 115640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,075 DEBUG Processing 270/676 atomic regions from SNP 80938 to 81538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,085 DEBUG Processing 189/661 atomic regions from SNP 56511 to 57111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,122 DEBUG Processing 644/723 atomic regions from SNP 192954 to 193554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,197 DEBUG Processing 385/704 atomic regions from SNP 115340 to 115940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,273 DEBUG Processing 190/661 atomic regions from SNP 56811 to 57411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,312 DEBUG Processing 271/676 atomic regions from SNP 81238 to 81838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,337 DEBUG Processing 645/723 atomic regions from SNP 193254 to 193854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,433 DEBUG Processing 386/704 atomic regions from SNP 115640 to 116240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,464 DEBUG Processing 191/661 atomic regions from SNP 57111 to 57711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,543 DEBUG Processing 272/676 atomic regions from SNP 81538 to 82138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,545 DEBUG Processing 646/723 atomic regions from SNP 193554 to 194154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,653 DEBUG Processing 192/661 atomic regions from SNP 57411 to 58011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,662 DEBUG Processing 387/704 atomic regions from SNP 115940 to 116540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,760 DEBUG Processing 647/723 atomic regions from SNP 193854 to 194454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,766 DEBUG Processing 273/676 atomic regions from SNP 81838 to 82438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,844 DEBUG Processing 193/661 atomic regions from SNP 57711 to 58311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,899 DEBUG Processing 388/704 atomic regions from SNP 116240 to 116840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,979 DEBUG Processing 648/723 atomic regions from SNP 194154 to 194754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,984 DEBUG Processing 274/676 atomic regions from SNP 82138 to 82738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,032 DEBUG Processing 194/661 atomic regions from SNP 58011 to 58611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,135 DEBUG Processing 389/704 atomic regions from SNP 116540 to 117140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,201 DEBUG Processing 649/723 atomic regions from SNP 194454 to 195054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,203 DEBUG Processing 275/676 atomic regions from SNP 82438 to 83038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,222 DEBUG Processing 195/661 atomic regions from SNP 58311 to 58911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,362 DEBUG Processing 390/704 atomic regions from SNP 116840 to 117440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,416 DEBUG Processing 276/676 atomic regions from SNP 82738 to 83338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,418 DEBUG Processing 196/661 atomic regions from SNP 58611 to 59211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,419 DEBUG Processing 650/723 atomic regions from SNP 194754 to 195354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,584 DEBUG Processing 391/704 atomic regions from SNP 117140 to 117740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,620 DEBUG Processing 197/661 atomic regions from SNP 58911 to 59511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,630 DEBUG Processing 277/676 atomic regions from SNP 83038 to 83638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,637 DEBUG Processing 651/723 atomic regions from SNP 195054 to 195654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,807 DEBUG Processing 392/704 atomic regions from SNP 117440 to 118040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,817 DEBUG Processing 198/661 atomic regions from SNP 59211 to 59811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,844 DEBUG Processing 278/676 atomic regions from SNP 83338 to 83938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,857 DEBUG Processing 652/723 atomic regions from SNP 195354 to 195954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,014 DEBUG Processing 199/661 atomic regions from SNP 59511 to 60111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,039 DEBUG Processing 393/704 atomic regions from SNP 117740 to 118340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,059 DEBUG Processing 279/676 atomic regions from SNP 83638 to 84238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,077 DEBUG Processing 653/723 atomic regions from SNP 195654 to 196254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,217 DEBUG Processing 200/661 atomic regions from SNP 59811 to 60411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,274 DEBUG Processing 394/704 atomic regions from SNP 118040 to 118640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,276 DEBUG Processing 280/676 atomic regions from SNP 83938 to 84538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,294 DEBUG Processing 654/723 atomic regions from SNP 195954 to 196554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,419 DEBUG Processing 201/661 atomic regions from SNP 60111 to 60711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,484 DEBUG Processing 395/704 atomic regions from SNP 118340 to 118940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,489 DEBUG Processing 281/676 atomic regions from SNP 84238 to 84838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,515 DEBUG Processing 655/723 atomic regions from SNP 196254 to 196854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,613 DEBUG Processing 202/661 atomic regions from SNP 60411 to 61011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,689 DEBUG Processing 396/704 atomic regions from SNP 118640 to 119240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,698 DEBUG Processing 282/676 atomic regions from SNP 84538 to 85138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,732 DEBUG Processing 656/723 atomic regions from SNP 196554 to 197154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,803 DEBUG Processing 203/661 atomic regions from SNP 60711 to 61311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,894 DEBUG Processing 397/704 atomic regions from SNP 118940 to 119540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,931 DEBUG Processing 283/676 atomic regions from SNP 84838 to 85438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,946 DEBUG Processing 657/723 atomic regions from SNP 196854 to 197454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,997 DEBUG Processing 204/661 atomic regions from SNP 61011 to 61611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,100 DEBUG Processing 398/704 atomic regions from SNP 119240 to 119840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,151 DEBUG Processing 284/676 atomic regions from SNP 85138 to 85738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,162 DEBUG Processing 658/723 atomic regions from SNP 197154 to 197754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,192 DEBUG Processing 205/661 atomic regions from SNP 61311 to 61911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,299 DEBUG Processing 399/704 atomic regions from SNP 119540 to 120140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,361 DEBUG Processing 285/676 atomic regions from SNP 85438 to 86038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,380 DEBUG Processing 659/723 atomic regions from SNP 197454 to 198054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,385 DEBUG Processing 206/661 atomic regions from SNP 61611 to 62211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,501 DEBUG Processing 400/704 atomic regions from SNP 119840 to 120440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,567 DEBUG Processing 286/676 atomic regions from SNP 85738 to 86338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,578 DEBUG Processing 207/661 atomic regions from SNP 61911 to 62511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,591 DEBUG Processing 660/723 atomic regions from SNP 197754 to 198354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,700 DEBUG Processing 401/704 atomic regions from SNP 120140 to 120740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,766 DEBUG Processing 287/676 atomic regions from SNP 86038 to 86638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,772 DEBUG Processing 208/661 atomic regions from SNP 62211 to 62811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,805 DEBUG Processing 661/723 atomic regions from SNP 198054 to 198654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,900 DEBUG Processing 402/704 atomic regions from SNP 120440 to 121040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,968 DEBUG Processing 288/676 atomic regions from SNP 86338 to 86938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,968 DEBUG Processing 209/661 atomic regions from SNP 62511 to 63111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,032 DEBUG Processing 662/723 atomic regions from SNP 198354 to 198954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,102 DEBUG Processing 403/704 atomic regions from SNP 120740 to 121340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,165 DEBUG Processing 210/661 atomic regions from SNP 62811 to 63411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,176 DEBUG Processing 289/676 atomic regions from SNP 86638 to 87238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,246 DEBUG Processing 663/723 atomic regions from SNP 198654 to 199254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,323 DEBUG Processing 404/704 atomic regions from SNP 121040 to 121640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,360 DEBUG Processing 211/661 atomic regions from SNP 63111 to 63711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,378 DEBUG Processing 290/676 atomic regions from SNP 86938 to 87538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,477 DEBUG Processing 664/723 atomic regions from SNP 198954 to 199554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,538 DEBUG Processing 405/704 atomic regions from SNP 121340 to 121940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,552 DEBUG Processing 212/661 atomic regions from SNP 63411 to 64011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,581 DEBUG Processing 291/676 atomic regions from SNP 87238 to 87838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,694 DEBUG Processing 665/723 atomic regions from SNP 199254 to 199854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,739 DEBUG Processing 406/704 atomic regions from SNP 121640 to 122240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,742 DEBUG Processing 213/661 atomic regions from SNP 63711 to 64311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,785 DEBUG Processing 292/676 atomic regions from SNP 87538 to 88138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,906 DEBUG Processing 666/723 atomic regions from SNP 199554 to 200154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,933 DEBUG Processing 214/661 atomic regions from SNP 64011 to 64611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,943 DEBUG Processing 407/704 atomic regions from SNP 121940 to 122540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,987 DEBUG Processing 293/676 atomic regions from SNP 87838 to 88438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,117 DEBUG Processing 667/723 atomic regions from SNP 199854 to 200454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,130 DEBUG Processing 215/661 atomic regions from SNP 64311 to 64911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,172 DEBUG Processing 408/704 atomic regions from SNP 122240 to 122840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,186 DEBUG Processing 294/676 atomic regions from SNP 88138 to 88738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,324 DEBUG Processing 668/723 atomic regions from SNP 200154 to 200754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,324 DEBUG Processing 216/661 atomic regions from SNP 64611 to 65211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,376 DEBUG Processing 409/704 atomic regions from SNP 122540 to 123140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,385 DEBUG Processing 295/676 atomic regions from SNP 88438 to 89038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,516 DEBUG Processing 217/661 atomic regions from SNP 64911 to 65511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,530 DEBUG Processing 669/723 atomic regions from SNP 200454 to 201054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,586 DEBUG Processing 410/704 atomic regions from SNP 122840 to 123440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,591 DEBUG Processing 296/676 atomic regions from SNP 88738 to 89338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,704 DEBUG Processing 218/661 atomic regions from SNP 65211 to 65811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,741 DEBUG Processing 670/723 atomic regions from SNP 200754 to 201354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,799 DEBUG Processing 297/676 atomic regions from SNP 89038 to 89638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,802 DEBUG Processing 411/704 atomic regions from SNP 123140 to 123740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,889 DEBUG Processing 219/661 atomic regions from SNP 65511 to 66111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,947 DEBUG Processing 671/723 atomic regions from SNP 201054 to 201654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,004 DEBUG Processing 298/676 atomic regions from SNP 89338 to 89938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,007 DEBUG Processing 412/704 atomic regions from SNP 123440 to 124040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,077 DEBUG Processing 220/661 atomic regions from SNP 65811 to 66411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,162 DEBUG Processing 672/723 atomic regions from SNP 201354 to 201954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,216 DEBUG Processing 299/676 atomic regions from SNP 89638 to 90238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,218 DEBUG Processing 413/704 atomic regions from SNP 123740 to 124340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,270 DEBUG Processing 221/661 atomic regions from SNP 66111 to 66711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,367 DEBUG Processing 673/723 atomic regions from SNP 201654 to 202254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,419 DEBUG Processing 414/704 atomic regions from SNP 124040 to 124640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,422 DEBUG Processing 300/676 atomic regions from SNP 89938 to 90538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,465 DEBUG Processing 222/661 atomic regions from SNP 66411 to 67011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,570 DEBUG Processing 674/723 atomic regions from SNP 201954 to 202554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,620 DEBUG Processing 415/704 atomic regions from SNP 124340 to 124940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,654 DEBUG Processing 301/676 atomic regions from SNP 90238 to 90838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,662 DEBUG Processing 223/661 atomic regions from SNP 66711 to 67311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,773 DEBUG Processing 675/723 atomic regions from SNP 202254 to 202854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,819 DEBUG Processing 416/704 atomic regions from SNP 124640 to 125240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,857 DEBUG Processing 224/661 atomic regions from SNP 67011 to 67611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,890 DEBUG Processing 302/676 atomic regions from SNP 90538 to 91138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,978 DEBUG Processing 676/723 atomic regions from SNP 202554 to 203154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,024 DEBUG Processing 417/704 atomic regions from SNP 124940 to 125540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,050 DEBUG Processing 225/661 atomic regions from SNP 67311 to 67911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,111 DEBUG Processing 303/676 atomic regions from SNP 90838 to 91438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,186 DEBUG Processing 677/723 atomic regions from SNP 202854 to 203454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,242 DEBUG Processing 226/661 atomic regions from SNP 67611 to 68211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,254 DEBUG Processing 418/704 atomic regions from SNP 125240 to 125840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,320 DEBUG Processing 304/676 atomic regions from SNP 91138 to 91738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,392 DEBUG Processing 678/723 atomic regions from SNP 203154 to 203754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,437 DEBUG Processing 227/661 atomic regions from SNP 67911 to 68511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,455 DEBUG Processing 419/704 atomic regions from SNP 125540 to 126140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,548 DEBUG Processing 305/676 atomic regions from SNP 91438 to 92038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,598 DEBUG Processing 679/723 atomic regions from SNP 203454 to 204054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,631 DEBUG Processing 228/661 atomic regions from SNP 68211 to 68811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,673 DEBUG Processing 420/704 atomic regions from SNP 125840 to 126440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,779 DEBUG Processing 306/676 atomic regions from SNP 91738 to 92338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,806 DEBUG Processing 680/723 atomic regions from SNP 203754 to 204354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,827 DEBUG Processing 229/661 atomic regions from SNP 68511 to 69111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,902 DEBUG Processing 421/704 atomic regions from SNP 126140 to 126740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,012 DEBUG Processing 681/723 atomic regions from SNP 204054 to 204654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,014 DEBUG Processing 307/676 atomic regions from SNP 92038 to 92638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,019 DEBUG Processing 230/661 atomic regions from SNP 68811 to 69411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,136 DEBUG Processing 422/704 atomic regions from SNP 126440 to 127040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,210 DEBUG Processing 231/661 atomic regions from SNP 69111 to 69711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,218 DEBUG Processing 682/723 atomic regions from SNP 204354 to 204954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,251 DEBUG Processing 308/676 atomic regions from SNP 92338 to 92938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,365 DEBUG Processing 423/704 atomic regions from SNP 126740 to 127340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,401 DEBUG Processing 232/661 atomic regions from SNP 69411 to 70011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,426 DEBUG Processing 683/723 atomic regions from SNP 204654 to 205254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,476 DEBUG Processing 309/676 atomic regions from SNP 92638 to 93238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,583 DEBUG Processing 424/704 atomic regions from SNP 127040 to 127640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,595 DEBUG Processing 233/661 atomic regions from SNP 69711 to 70311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,635 DEBUG Processing 684/723 atomic regions from SNP 204954 to 205554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,677 DEBUG Processing 310/676 atomic regions from SNP 92938 to 93538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,791 DEBUG Processing 234/661 atomic regions from SNP 70011 to 70611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,801 DEBUG Processing 425/704 atomic regions from SNP 127340 to 127940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,843 DEBUG Processing 685/723 atomic regions from SNP 205254 to 205854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,880 DEBUG Processing 311/676 atomic regions from SNP 93238 to 93838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,986 DEBUG Processing 235/661 atomic regions from SNP 70311 to 70911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,003 DEBUG Processing 426/704 atomic regions from SNP 127640 to 128240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,051 DEBUG Processing 686/723 atomic regions from SNP 205554 to 206154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,084 DEBUG Processing 312/676 atomic regions from SNP 93538 to 94138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,177 DEBUG Processing 236/661 atomic regions from SNP 70611 to 71211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,203 DEBUG Processing 427/704 atomic regions from SNP 127940 to 128540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,261 DEBUG Processing 687/723 atomic regions from SNP 205854 to 206454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,288 DEBUG Processing 313/676 atomic regions from SNP 93838 to 94438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,373 DEBUG Processing 237/661 atomic regions from SNP 70911 to 71511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,407 DEBUG Processing 428/704 atomic regions from SNP 128240 to 128840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,479 DEBUG Processing 688/723 atomic regions from SNP 206154 to 206754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,495 DEBUG Processing 314/676 atomic regions from SNP 94138 to 94738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,568 DEBUG Processing 238/661 atomic regions from SNP 71211 to 71811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,611 DEBUG Processing 429/704 atomic regions from SNP 128540 to 129140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,691 DEBUG Processing 689/723 atomic regions from SNP 206454 to 207054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,702 DEBUG Processing 315/676 atomic regions from SNP 94438 to 95038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,762 DEBUG Processing 239/661 atomic regions from SNP 71511 to 72111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,811 DEBUG Processing 430/704 atomic regions from SNP 128840 to 129440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,899 DEBUG Processing 690/723 atomic regions from SNP 206754 to 207354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,908 DEBUG Processing 316/676 atomic regions from SNP 94738 to 95338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,957 DEBUG Processing 240/661 atomic regions from SNP 71811 to 72411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,012 DEBUG Processing 431/704 atomic regions from SNP 129140 to 129740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,108 DEBUG Processing 691/723 atomic regions from SNP 207054 to 207654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,115 DEBUG Processing 317/676 atomic regions from SNP 95038 to 95638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,154 DEBUG Processing 241/661 atomic regions from SNP 72111 to 72711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,221 DEBUG Processing 432/704 atomic regions from SNP 129440 to 130040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,320 DEBUG Processing 692/723 atomic regions from SNP 207354 to 207954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,324 DEBUG Processing 318/676 atomic regions from SNP 95338 to 95938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,348 DEBUG Processing 242/661 atomic regions from SNP 72411 to 73011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,434 DEBUG Processing 433/704 atomic regions from SNP 129740 to 130340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,531 DEBUG Processing 319/676 atomic regions from SNP 95638 to 96238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,532 DEBUG Processing 693/723 atomic regions from SNP 207654 to 208254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,544 DEBUG Processing 243/661 atomic regions from SNP 72711 to 73311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,665 DEBUG Processing 434/704 atomic regions from SNP 130040 to 130640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,736 DEBUG Processing 320/676 atomic regions from SNP 95938 to 96538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,737 DEBUG Processing 244/661 atomic regions from SNP 73011 to 73611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,761 DEBUG Processing 694/723 atomic regions from SNP 207954 to 208554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,886 DEBUG Processing 435/704 atomic regions from SNP 130340 to 130940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,929 DEBUG Processing 245/661 atomic regions from SNP 73311 to 73911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,940 DEBUG Processing 321/676 atomic regions from SNP 96238 to 96838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,993 DEBUG Processing 695/723 atomic regions from SNP 208254 to 208854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,120 DEBUG Processing 436/704 atomic regions from SNP 130640 to 131240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,124 DEBUG Processing 246/661 atomic regions from SNP 73611 to 74211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,142 DEBUG Processing 322/676 atomic regions from SNP 96538 to 97138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,206 DEBUG Processing 696/723 atomic regions from SNP 208554 to 209154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,317 DEBUG Processing 247/661 atomic regions from SNP 73911 to 74511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,341 DEBUG Processing 323/676 atomic regions from SNP 96838 to 97438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,343 DEBUG Processing 437/704 atomic regions from SNP 130940 to 131540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,416 DEBUG Processing 697/723 atomic regions from SNP 208854 to 209454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,508 DEBUG Processing 248/661 atomic regions from SNP 74211 to 74811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,567 DEBUG Processing 324/676 atomic regions from SNP 97138 to 97738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,576 DEBUG Processing 438/704 atomic regions from SNP 131240 to 131840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,626 DEBUG Processing 698/723 atomic regions from SNP 209154 to 209754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,703 DEBUG Processing 249/661 atomic regions from SNP 74511 to 75111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,802 DEBUG Processing 325/676 atomic regions from SNP 97438 to 98038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,813 DEBUG Processing 439/704 atomic regions from SNP 131540 to 132140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,864 DEBUG Processing 699/723 atomic regions from SNP 209454 to 210054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,912 DEBUG Processing 250/661 atomic regions from SNP 74811 to 75411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,033 DEBUG Processing 440/704 atomic regions from SNP 131840 to 132440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,033 DEBUG Processing 326/676 atomic regions from SNP 97738 to 98338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,091 DEBUG Processing 700/723 atomic regions from SNP 209754 to 210354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,103 DEBUG Processing 251/661 atomic regions from SNP 75111 to 75711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,252 DEBUG Processing 441/704 atomic regions from SNP 132140 to 132740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,256 DEBUG Processing 327/676 atomic regions from SNP 98038 to 98638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,294 DEBUG Processing 252/661 atomic regions from SNP 75411 to 76011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,308 DEBUG Processing 701/723 atomic regions from SNP 210054 to 210654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,455 DEBUG Processing 442/704 atomic regions from SNP 132440 to 133040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,461 DEBUG Processing 328/676 atomic regions from SNP 98338 to 98938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,490 DEBUG Processing 253/661 atomic regions from SNP 75711 to 76311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,540 DEBUG Processing 702/723 atomic regions from SNP 210354 to 210954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,659 DEBUG Processing 443/704 atomic regions from SNP 132740 to 133340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,685 DEBUG Processing 329/676 atomic regions from SNP 98638 to 99238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,686 DEBUG Processing 254/661 atomic regions from SNP 76011 to 76611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,758 DEBUG Processing 703/723 atomic regions from SNP 210654 to 211254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,875 DEBUG Processing 444/704 atomic regions from SNP 133040 to 133640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,896 DEBUG Processing 255/661 atomic regions from SNP 76311 to 76911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,898 DEBUG Processing 330/676 atomic regions from SNP 98938 to 99538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,975 DEBUG Processing 704/723 atomic regions from SNP 210954 to 211554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,081 DEBUG Processing 445/704 atomic regions from SNP 133340 to 133940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,094 DEBUG Processing 256/661 atomic regions from SNP 76611 to 77211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,102 DEBUG Processing 331/676 atomic regions from SNP 99238 to 99838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,183 DEBUG Processing 705/723 atomic regions from SNP 211254 to 211854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,284 DEBUG Processing 446/704 atomic regions from SNP 133640 to 134240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,292 DEBUG Processing 257/661 atomic regions from SNP 76911 to 77511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,305 DEBUG Processing 332/676 atomic regions from SNP 99538 to 100138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,402 DEBUG Processing 706/723 atomic regions from SNP 211554 to 212154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,488 DEBUG Processing 447/704 atomic regions from SNP 133940 to 134540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,490 DEBUG Processing 258/661 atomic regions from SNP 77211 to 77811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,539 DEBUG Processing 333/676 atomic regions from SNP 99838 to 100438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,635 DEBUG Processing 707/723 atomic regions from SNP 211854 to 212454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,690 DEBUG Processing 259/661 atomic regions from SNP 77511 to 78111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,711 DEBUG Processing 448/704 atomic regions from SNP 134240 to 134840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,774 DEBUG Processing 334/676 atomic regions from SNP 100138 to 100738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,852 DEBUG Processing 708/723 atomic regions from SNP 212154 to 212754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,907 DEBUG Processing 260/661 atomic regions from SNP 77811 to 78411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,921 DEBUG Processing 449/704 atomic regions from SNP 134540 to 135140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,994 DEBUG Processing 335/676 atomic regions from SNP 100438 to 101038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,078 DEBUG Processing 709/723 atomic regions from SNP 212454 to 213054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,122 DEBUG Processing 261/661 atomic regions from SNP 78111 to 78711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,128 DEBUG Processing 450/704 atomic regions from SNP 134840 to 135440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,189 DEBUG Processing 336/676 atomic regions from SNP 100738 to 101338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,301 DEBUG Processing 710/723 atomic regions from SNP 212754 to 213354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,333 DEBUG Processing 262/661 atomic regions from SNP 78411 to 79011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,333 DEBUG Processing 451/704 atomic regions from SNP 135140 to 135740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,386 DEBUG Processing 337/676 atomic regions from SNP 101038 to 101638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,506 DEBUG Processing 711/723 atomic regions from SNP 213054 to 213654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,530 DEBUG Processing 263/661 atomic regions from SNP 78711 to 79311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,540 DEBUG Processing 452/704 atomic regions from SNP 135440 to 136040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,600 DEBUG Processing 338/676 atomic regions from SNP 101338 to 101938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,709 DEBUG Processing 712/723 atomic regions from SNP 213354 to 213954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,724 DEBUG Processing 264/661 atomic regions from SNP 79011 to 79611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,745 DEBUG Processing 453/704 atomic regions from SNP 135740 to 136340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,797 DEBUG Processing 339/676 atomic regions from SNP 101638 to 102238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,918 DEBUG Processing 713/723 atomic regions from SNP 213654 to 214254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,934 DEBUG Processing 265/661 atomic regions from SNP 79311 to 79911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,953 DEBUG Processing 454/704 atomic regions from SNP 136040 to 136640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,998 DEBUG Processing 340/676 atomic regions from SNP 101938 to 102538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,123 DEBUG Processing 714/723 atomic regions from SNP 213954 to 214554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,143 DEBUG Processing 266/661 atomic regions from SNP 79611 to 80211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,160 DEBUG Processing 455/704 atomic regions from SNP 136340 to 136940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,202 DEBUG Processing 341/676 atomic regions from SNP 102238 to 102838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,324 DEBUG Processing 715/723 atomic regions from SNP 214254 to 214854 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,339 DEBUG Processing 267/661 atomic regions from SNP 79911 to 80511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,362 DEBUG Processing 456/704 atomic regions from SNP 136640 to 137240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,403 DEBUG Processing 342/676 atomic regions from SNP 102538 to 103138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,527 DEBUG Processing 716/723 atomic regions from SNP 214554 to 215154 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,530 DEBUG Processing 268/661 atomic regions from SNP 80211 to 80811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,564 DEBUG Processing 457/704 atomic regions from SNP 136940 to 137540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,602 DEBUG Processing 343/676 atomic regions from SNP 102838 to 103438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,724 DEBUG Processing 269/661 atomic regions from SNP 80511 to 81111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,733 DEBUG Processing 717/723 atomic regions from SNP 214854 to 215454 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,769 DEBUG Processing 458/704 atomic regions from SNP 137240 to 137840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,801 DEBUG Processing 344/676 atomic regions from SNP 103138 to 103738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,855 DEBUG Segmenting atomic regions: 2025-01-31 09:53:52,916 DEBUG Processing 270/661 atomic regions from SNP 80811 to 81411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,926 DEBUG Processing 1/561 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,950 DEBUG Processing 718/723 atomic regions from SNP 215154 to 215754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,973 DEBUG Processing 459/704 atomic regions from SNP 137540 to 138140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,001 DEBUG Processing 345/676 atomic regions from SNP 103438 to 104038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,108 DEBUG Processing 2/561 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,112 DEBUG Processing 271/661 atomic regions from SNP 81111 to 81711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,164 DEBUG Processing 719/723 atomic regions from SNP 215454 to 216054 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,177 DEBUG Processing 460/704 atomic regions from SNP 137840 to 138440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,202 DEBUG Processing 346/676 atomic regions from SNP 103738 to 104338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,293 DEBUG Processing 3/561 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,315 DEBUG Processing 272/661 atomic regions from SNP 81411 to 82011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,378 DEBUG Processing 720/723 atomic regions from SNP 215754 to 216354 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,382 DEBUG Processing 461/704 atomic regions from SNP 138140 to 138740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,401 DEBUG Processing 347/676 atomic regions from SNP 104038 to 104638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,485 DEBUG Processing 4/561 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,510 DEBUG Processing 273/661 atomic regions from SNP 81711 to 82311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,581 DEBUG Processing 721/723 atomic regions from SNP 216054 to 216654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,585 DEBUG Processing 462/704 atomic regions from SNP 138440 to 139040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,601 DEBUG Processing 348/676 atomic regions from SNP 104338 to 104938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,675 DEBUG Processing 5/561 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,705 DEBUG Processing 274/661 atomic regions from SNP 82011 to 82611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,787 DEBUG Processing 722/723 atomic regions from SNP 216354 to 216954 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,796 DEBUG Processing 463/704 atomic regions from SNP 138740 to 139340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,800 DEBUG Processing 349/676 atomic regions from SNP 104638 to 105238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,868 DEBUG Processing 6/561 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,898 DEBUG Processing 275/661 atomic regions from SNP 82311 to 82911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,987 DEBUG Segmenting atomic regions: 2025-01-31 09:53:53,993 DEBUG Processing 723/723 atomic regions from SNP 216654 to 217254 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,998 DEBUG Processing 464/704 atomic regions from SNP 139040 to 139640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,007 DEBUG Processing 350/676 atomic regions from SNP 104938 to 105538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,062 DEBUG Processing 1/596 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,068 DEBUG Processing 7/561 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,087 DEBUG Processing 276/661 atomic regions from SNP 82611 to 83211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,135 DEBUG Unique SNPs positions in subchromosome 1: 217255 2025-01-31 09:53:54,199 DEBUG Processing 465/704 atomic regions from SNP 139340 to 139940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,224 DEBUG Processing 351/676 atomic regions from SNP 105238 to 105838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,250 DEBUG Processing 2/596 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,281 DEBUG Processing 277/661 atomic regions from SNP 82911 to 83511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,284 DEBUG Processing 8/561 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,402 DEBUG Processing 466/704 atomic regions from SNP 139640 to 140240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,436 DEBUG Processing 3/596 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,445 DEBUG Processing 352/676 atomic regions from SNP 105538 to 106138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,493 DEBUG Processing 9/561 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,495 DEBUG Processing 278/661 atomic regions from SNP 83211 to 83811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,622 DEBUG Processing 4/596 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,626 DEBUG Processing 467/704 atomic regions from SNP 139940 to 140540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,669 DEBUG Processing 353/676 atomic regions from SNP 105838 to 106438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,697 DEBUG Processing 10/561 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,714 DEBUG Processing 279/661 atomic regions from SNP 83511 to 84111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,810 DEBUG Processing 5/596 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,843 DEBUG Processing 468/704 atomic regions from SNP 140240 to 140840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,889 DEBUG Processing 11/561 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,892 DEBUG Processing 354/676 atomic regions from SNP 106138 to 106738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,922 DEBUG Processing 280/661 atomic regions from SNP 83811 to 84411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,994 DEBUG Processing 6/596 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,060 DEBUG Processing 469/704 atomic regions from SNP 140540 to 141140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,095 DEBUG Processing 12/561 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,112 DEBUG Processing 355/676 atomic regions from SNP 106438 to 107038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,132 DEBUG Processing 281/661 atomic regions from SNP 84111 to 84711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,179 DEBUG Processing 7/596 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,277 DEBUG Processing 470/704 atomic regions from SNP 140840 to 141440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,284 DEBUG Processing 13/561 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,334 DEBUG Processing 356/676 atomic regions from SNP 106738 to 107338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,353 DEBUG Processing 282/661 atomic regions from SNP 84411 to 85011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,366 DEBUG Processing 8/596 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,469 DEBUG Processing 14/561 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,480 DEBUG Processing 471/704 atomic regions from SNP 141140 to 141740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,553 DEBUG Processing 9/596 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,558 DEBUG Processing 283/661 atomic regions from SNP 84711 to 85311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,562 DEBUG Processing 357/676 atomic regions from SNP 107038 to 107638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,647 DEBUG Processing 15/561 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,680 DEBUG Processing 472/704 atomic regions from SNP 141440 to 142040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,739 DEBUG Processing 10/596 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,752 DEBUG Processing 284/661 atomic regions from SNP 85011 to 85611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,792 DEBUG Processing 358/676 atomic regions from SNP 107338 to 107938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,826 DEBUG Processing 16/561 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,882 DEBUG Processing 473/704 atomic regions from SNP 141740 to 142340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,926 DEBUG Processing 11/596 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,945 DEBUG Processing 285/661 atomic regions from SNP 85311 to 85911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,007 DEBUG Processing 17/561 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,016 DEBUG Processing 359/676 atomic regions from SNP 107638 to 108238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,083 DEBUG Processing 474/704 atomic regions from SNP 142040 to 142640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,127 DEBUG Processing 12/596 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,138 DEBUG Processing 286/661 atomic regions from SNP 85611 to 86211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,190 DEBUG Processing 18/561 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,219 DEBUG Processing 360/676 atomic regions from SNP 107938 to 108538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,287 DEBUG Processing 475/704 atomic regions from SNP 142340 to 142940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,328 DEBUG Processing 13/596 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,337 DEBUG Processing 287/661 atomic regions from SNP 85911 to 86511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,374 DEBUG Processing 19/561 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,424 DEBUG Processing 361/676 atomic regions from SNP 108238 to 108838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,488 DEBUG Processing 476/704 atomic regions from SNP 142640 to 143240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,514 DEBUG Processing 14/596 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,534 DEBUG Processing 288/661 atomic regions from SNP 86211 to 86811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,557 DEBUG Processing 20/561 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,628 DEBUG Processing 362/676 atomic regions from SNP 108538 to 109138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,697 DEBUG Processing 15/596 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,697 DEBUG Processing 477/704 atomic regions from SNP 142940 to 143540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,732 DEBUG Processing 289/661 atomic regions from SNP 86511 to 87111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,735 DEBUG Processing 21/561 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,850 DEBUG Processing 363/676 atomic regions from SNP 108838 to 109438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,883 DEBUG Processing 16/596 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,914 DEBUG Processing 22/561 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,924 DEBUG Processing 478/704 atomic regions from SNP 143240 to 143840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,925 DEBUG Processing 290/661 atomic regions from SNP 86811 to 87411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,070 DEBUG Processing 17/596 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,070 DEBUG Processing 364/676 atomic regions from SNP 109138 to 109738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,093 DEBUG Processing 23/561 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,118 DEBUG Processing 291/661 atomic regions from SNP 87111 to 87711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,156 DEBUG Processing 479/704 atomic regions from SNP 143540 to 144140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,261 DEBUG Processing 18/596 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,279 DEBUG Processing 365/676 atomic regions from SNP 109438 to 110038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,281 DEBUG Processing 24/561 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,315 DEBUG Processing 292/661 atomic regions from SNP 87411 to 88011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,371 DEBUG Processing 480/704 atomic regions from SNP 143840 to 144440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,455 DEBUG Processing 19/596 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,476 DEBUG Processing 25/561 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,493 DEBUG Processing 366/676 atomic regions from SNP 109738 to 110338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,514 DEBUG Processing 293/661 atomic regions from SNP 87711 to 88311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,584 DEBUG Processing 481/704 atomic regions from SNP 144140 to 144740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,647 DEBUG Processing 20/596 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,665 DEBUG Processing 26/561 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,704 DEBUG Processing 367/676 atomic regions from SNP 110038 to 110638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,714 DEBUG Processing 294/661 atomic regions from SNP 88011 to 88611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,792 DEBUG Processing 482/704 atomic regions from SNP 144440 to 145040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,835 DEBUG Processing 21/596 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,854 DEBUG Processing 27/561 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,910 DEBUG Processing 295/661 atomic regions from SNP 88311 to 88911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,915 DEBUG Processing 368/676 atomic regions from SNP 110338 to 110938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,994 DEBUG Processing 483/704 atomic regions from SNP 144740 to 145340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,025 DEBUG Processing 22/596 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,036 DEBUG Processing 28/561 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,104 DEBUG Processing 296/661 atomic regions from SNP 88611 to 89211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,117 DEBUG Processing 369/676 atomic regions from SNP 110638 to 111238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,195 DEBUG Processing 484/704 atomic regions from SNP 145040 to 145640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,210 DEBUG Processing 23/596 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,218 DEBUG Processing 29/561 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,293 DEBUG Processing 297/661 atomic regions from SNP 88911 to 89511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,313 DEBUG Processing 370/676 atomic regions from SNP 110938 to 111538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,393 DEBUG Processing 24/596 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,396 DEBUG Processing 30/561 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,417 DEBUG Processing 485/704 atomic regions from SNP 145340 to 145940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,483 DEBUG Processing 298/661 atomic regions from SNP 89211 to 89811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,508 DEBUG Processing 371/676 atomic regions from SNP 111238 to 111838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,575 DEBUG Processing 31/561 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,576 DEBUG Processing 25/596 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,628 DEBUG Processing 486/704 atomic regions from SNP 145640 to 146240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,674 DEBUG Processing 299/661 atomic regions from SNP 89511 to 90111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,700 DEBUG Processing 372/676 atomic regions from SNP 111538 to 112138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,758 DEBUG Processing 26/596 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,763 DEBUG Processing 32/561 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,835 DEBUG Processing 487/704 atomic regions from SNP 145940 to 146540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,873 DEBUG Processing 300/661 atomic regions from SNP 89811 to 90411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,895 DEBUG Processing 373/676 atomic regions from SNP 111838 to 112438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,944 DEBUG Processing 27/596 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,971 DEBUG Processing 33/561 atomic regions from SNP 9632 to 10232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,034 DEBUG Processing 488/704 atomic regions from SNP 146240 to 146840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,065 DEBUG Processing 301/661 atomic regions from SNP 90111 to 90711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,088 DEBUG Processing 374/676 atomic regions from SNP 112138 to 112738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,099 DEBUG Subchromosome time: 193.39156945899595, subchromosome SNPs: 217255 2025-01-31 09:53:59,099 DEBUG Estimated BADs: [0.65, 6.54, 1.31, 0.65, 1.31, 0.26, 1.31, 6.54, 1.31, 2.62, 3.93, 1.31, 0.65, 0.33, 1.31, 3.93, 1.31, 2.62] SNP counts: [29595, 3286, 5975, 16878, 5004, 3300, 7814, 1199, 22509, 12902, 6048, 22139, 19229, 5668, 22661, 8011, 15833, 9204] SNP IDs counts: [29595, 3286, 5975, 16878, 5004, 3300, 7814, 1199, 22509, 12902, 6048, 22139, 19229, 5668, 22661, 8011, 15833, 9204] Critical gap: 598698bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 20.63Mbp, 22.37Mbp, 25.74Mbp, 34.98Mbp, 37.90Mbp, 39.86Mbp, 44.07Mbp, 44.71Mbp, 56.88Mbp, 63.69Mbp, 66.88Mbp, 79.02Mbp, 90.54Mbp, 93.91Mbp, 106.16Mbp, 110.62Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:53:59,100 DEBUG chr9 time: 193.392023216933 s 2025-01-31 09:53:59,126 DEBUG Processing 28/596 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,172 DEBUG Processing 34/561 atomic regions from SNP 9932 to 10532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,214 DEBUG chr9: Fitting background model for 18 segments 2025-01-31 09:53:59,234 DEBUG Processing 489/704 atomic regions from SNP 146540 to 147140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,260 DEBUG Processing 302/661 atomic regions from SNP 90411 to 91011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,288 DEBUG Processing 375/676 atomic regions from SNP 112438 to 113038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,323 DEBUG Processing 29/596 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,351 DEBUG Processing 35/561 atomic regions from SNP 10232 to 10832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,437 DEBUG Processing 490/704 atomic regions from SNP 146840 to 147440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,475 DEBUG Processing 303/661 atomic regions from SNP 90711 to 91311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,488 DEBUG Processing 376/676 atomic regions from SNP 112738 to 113338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,529 DEBUG Processing 36/561 atomic regions from SNP 10532 to 11132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,533 DEBUG Processing 30/596 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,632 DEBUG Processing 491/704 atomic regions from SNP 147140 to 147740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,673 DEBUG Processing 304/661 atomic regions from SNP 91011 to 91611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,688 DEBUG Processing 377/676 atomic regions from SNP 113038 to 113638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,710 DEBUG Processing 37/561 atomic regions from SNP 10832 to 11432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,720 DEBUG Processing 31/596 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,847 DEBUG Processing 492/704 atomic regions from SNP 147440 to 148040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,864 DEBUG Processing 305/661 atomic regions from SNP 91311 to 91911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,890 DEBUG Processing 38/561 atomic regions from SNP 11132 to 11732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,905 DEBUG Processing 378/676 atomic regions from SNP 113338 to 113938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,911 DEBUG Processing 32/596 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,056 DEBUG Processing 493/704 atomic regions from SNP 147740 to 148340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,065 DEBUG Processing 306/661 atomic regions from SNP 91611 to 92211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,073 DEBUG Processing 39/561 atomic regions from SNP 11432 to 12032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,110 DEBUG Processing 33/596 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,139 DEBUG Processing 379/676 atomic regions from SNP 113638 to 114238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,247 DEBUG Processing 40/561 atomic regions from SNP 11732 to 12332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,253 DEBUG Processing 494/704 atomic regions from SNP 148040 to 148640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,253 DEBUG Processing 307/661 atomic regions from SNP 91911 to 92511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,291 DEBUG Processing 34/596 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,359 DEBUG Processing 380/676 atomic regions from SNP 113938 to 114538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,422 DEBUG Processing 41/561 atomic regions from SNP 12032 to 12632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,446 DEBUG Processing 308/661 atomic regions from SNP 92211 to 92811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,478 DEBUG Processing 495/704 atomic regions from SNP 148340 to 148940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,494 DEBUG Processing 35/596 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,555 DEBUG Processing 381/676 atomic regions from SNP 114238 to 114838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,598 DEBUG Processing 42/561 atomic regions from SNP 12332 to 12932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,637 DEBUG Processing 309/661 atomic regions from SNP 92511 to 93111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,689 DEBUG Processing 36/596 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,705 DEBUG Processing 496/704 atomic regions from SNP 148640 to 149240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,754 DEBUG Processing 382/676 atomic regions from SNP 114538 to 115138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,777 DEBUG Processing 43/561 atomic regions from SNP 12632 to 13232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,829 DEBUG Processing 310/661 atomic regions from SNP 92811 to 93411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,871 DEBUG Processing 37/596 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,929 DEBUG Processing 497/704 atomic regions from SNP 148940 to 149540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,952 DEBUG Processing 383/676 atomic regions from SNP 114838 to 115438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,968 DEBUG Processing 44/561 atomic regions from SNP 12932 to 13532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,021 DEBUG Processing 311/661 atomic regions from SNP 93111 to 93711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,047 DEBUG Processing 38/596 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,129 DEBUG Processing 498/704 atomic regions from SNP 149240 to 149840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,147 DEBUG Processing 384/676 atomic regions from SNP 115138 to 115738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,160 DEBUG Processing 45/561 atomic regions from SNP 13232 to 13832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,212 DEBUG Processing 312/661 atomic regions from SNP 93411 to 94011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,225 DEBUG Processing 39/596 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,342 DEBUG Processing 499/704 atomic regions from SNP 149540 to 150140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,342 DEBUG Processing 385/676 atomic regions from SNP 115438 to 116038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,355 DEBUG Processing 46/561 atomic regions from SNP 13532 to 14132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,405 DEBUG Processing 313/661 atomic regions from SNP 93711 to 94311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,406 DEBUG Processing 40/596 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,540 DEBUG Processing 386/676 atomic regions from SNP 115738 to 116338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,546 DEBUG Processing 47/561 atomic regions from SNP 13832 to 14432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,550 DEBUG Processing 500/704 atomic regions from SNP 149840 to 150440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,586 DEBUG Processing 41/596 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,595 DEBUG Processing 314/661 atomic regions from SNP 94011 to 94611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,739 DEBUG Processing 387/676 atomic regions from SNP 116038 to 116638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,748 DEBUG Processing 501/704 atomic regions from SNP 150140 to 150740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,750 DEBUG Processing 48/561 atomic regions from SNP 14132 to 14732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,770 DEBUG Processing 42/596 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,791 DEBUG Processing 315/661 atomic regions from SNP 94311 to 94911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,937 DEBUG Processing 388/676 atomic regions from SNP 116338 to 116938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,943 DEBUG Processing 502/704 atomic regions from SNP 150440 to 151040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,952 DEBUG Processing 49/561 atomic regions from SNP 14432 to 15032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,954 DEBUG Processing 43/596 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,985 DEBUG Processing 316/661 atomic regions from SNP 94611 to 95211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,135 DEBUG Processing 389/676 atomic regions from SNP 116638 to 117238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,139 DEBUG Processing 503/704 atomic regions from SNP 150740 to 151340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,139 DEBUG Processing 44/596 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,145 DEBUG Processing 50/561 atomic regions from SNP 14732 to 15332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,180 DEBUG Processing 317/661 atomic regions from SNP 94911 to 95511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,324 DEBUG Processing 51/561 atomic regions from SNP 15032 to 15632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,325 DEBUG Processing 45/596 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,337 DEBUG Processing 390/676 atomic regions from SNP 116938 to 117538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,339 DEBUG Processing 504/704 atomic regions from SNP 151040 to 151640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,375 DEBUG Processing 318/661 atomic regions from SNP 95211 to 95811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,505 DEBUG Processing 52/561 atomic regions from SNP 15332 to 15932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,508 DEBUG Processing 46/596 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,539 DEBUG Processing 391/676 atomic regions from SNP 117238 to 117838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,549 DEBUG Processing 505/704 atomic regions from SNP 151340 to 151940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,569 DEBUG Processing 319/661 atomic regions from SNP 95511 to 96111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,684 DEBUG Processing 53/561 atomic regions from SNP 15632 to 16232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,693 DEBUG Processing 47/596 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,743 DEBUG Processing 392/676 atomic regions from SNP 117538 to 118138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,749 DEBUG Processing 506/704 atomic regions from SNP 151640 to 152240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,763 DEBUG Processing 320/661 atomic regions from SNP 95811 to 96411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,864 DEBUG Processing 54/561 atomic regions from SNP 15932 to 16532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,878 DEBUG Processing 48/596 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,941 DEBUG Processing 393/676 atomic regions from SNP 117838 to 118438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,947 DEBUG Processing 507/704 atomic regions from SNP 151940 to 152540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,957 DEBUG Processing 321/661 atomic regions from SNP 96111 to 96711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,043 DEBUG Processing 55/561 atomic regions from SNP 16232 to 16832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,063 DEBUG Processing 49/596 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,141 DEBUG Processing 394/676 atomic regions from SNP 118138 to 118738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,146 DEBUG Processing 508/704 atomic regions from SNP 152240 to 152840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,148 DEBUG Processing 322/661 atomic regions from SNP 96411 to 97011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,219 DEBUG Processing 56/561 atomic regions from SNP 16532 to 17132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,244 DEBUG Processing 50/596 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,341 DEBUG Processing 323/661 atomic regions from SNP 96711 to 97311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,346 DEBUG Processing 509/704 atomic regions from SNP 152540 to 153140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,359 DEBUG Processing 395/676 atomic regions from SNP 118438 to 119038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,398 DEBUG Processing 57/561 atomic regions from SNP 16832 to 17432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,427 DEBUG Processing 51/596 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,534 DEBUG Processing 324/661 atomic regions from SNP 97011 to 97611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,547 DEBUG Processing 510/704 atomic regions from SNP 152840 to 153440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,581 DEBUG Processing 58/561 atomic regions from SNP 17132 to 17732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,583 DEBUG Processing 396/676 atomic regions from SNP 118738 to 119338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,612 DEBUG Processing 52/596 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,727 DEBUG Processing 325/661 atomic regions from SNP 97311 to 97911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,744 DEBUG Processing 511/704 atomic regions from SNP 153140 to 153740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,758 DEBUG Processing 59/561 atomic regions from SNP 17432 to 18032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,784 DEBUG Processing 397/676 atomic regions from SNP 119038 to 119638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,811 DEBUG Processing 53/596 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,920 DEBUG Processing 326/661 atomic regions from SNP 97611 to 98211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,939 DEBUG Processing 512/704 atomic regions from SNP 153440 to 154040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,947 DEBUG Processing 60/561 atomic regions from SNP 17732 to 18332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,985 DEBUG Processing 398/676 atomic regions from SNP 119338 to 119938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,026 DEBUG Processing 54/596 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,116 DEBUG Processing 327/661 atomic regions from SNP 97911 to 98511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,143 DEBUG Processing 513/704 atomic regions from SNP 153740 to 154340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,145 DEBUG Processing 61/561 atomic regions from SNP 18032 to 18632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,195 DEBUG Processing 399/676 atomic regions from SNP 119638 to 120238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,240 DEBUG Processing 55/596 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,315 DEBUG Processing 328/661 atomic regions from SNP 98211 to 98811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,345 DEBUG Processing 514/704 atomic regions from SNP 154040 to 154640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,357 DEBUG Processing 62/561 atomic regions from SNP 18332 to 18932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,405 DEBUG Processing 400/676 atomic regions from SNP 119938 to 120538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,430 DEBUG Processing 56/596 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,511 DEBUG Processing 329/661 atomic regions from SNP 98511 to 99111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,547 DEBUG Processing 515/704 atomic regions from SNP 154340 to 154940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,559 DEBUG Processing 63/561 atomic regions from SNP 18632 to 19232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,617 DEBUG Processing 57/596 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,622 DEBUG Processing 401/676 atomic regions from SNP 120238 to 120838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,706 DEBUG Processing 330/661 atomic regions from SNP 98811 to 99411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,750 DEBUG Processing 516/704 atomic regions from SNP 154640 to 155240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,764 DEBUG Processing 64/561 atomic regions from SNP 18932 to 19532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,806 DEBUG Processing 58/596 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,858 DEBUG Processing 402/676 atomic regions from SNP 120538 to 121138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,905 DEBUG Processing 331/661 atomic regions from SNP 99111 to 99711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,959 DEBUG Processing 65/561 atomic regions from SNP 19232 to 19832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,959 DEBUG Processing 517/704 atomic regions from SNP 154940 to 155540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,990 DEBUG Processing 59/596 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,094 DEBUG Processing 403/676 atomic regions from SNP 120838 to 121438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,099 DEBUG Processing 332/661 atomic regions from SNP 99411 to 100011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,156 DEBUG Processing 66/561 atomic regions from SNP 19532 to 20132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,165 DEBUG Processing 518/704 atomic regions from SNP 155240 to 155840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,174 DEBUG Processing 60/596 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,295 DEBUG Processing 333/661 atomic regions from SNP 99711 to 100311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,323 DEBUG Processing 404/676 atomic regions from SNP 121138 to 121738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,360 DEBUG Processing 67/561 atomic regions from SNP 19832 to 20432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,361 DEBUG Processing 61/596 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,371 DEBUG Processing 519/704 atomic regions from SNP 155540 to 156140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,493 DEBUG Processing 334/661 atomic regions from SNP 100011 to 100611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,550 DEBUG Processing 68/561 atomic regions from SNP 20132 to 20732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,552 DEBUG Processing 405/676 atomic regions from SNP 121438 to 122038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,559 DEBUG Processing 62/596 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,575 DEBUG Processing 520/704 atomic regions from SNP 155840 to 156440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,690 DEBUG Processing 335/661 atomic regions from SNP 100311 to 100911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,732 DEBUG Processing 69/561 atomic regions from SNP 20432 to 21032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,749 DEBUG Processing 63/596 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,778 DEBUG Processing 406/676 atomic regions from SNP 121738 to 122338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,780 DEBUG Processing 521/704 atomic regions from SNP 156140 to 156740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,886 DEBUG Processing 336/661 atomic regions from SNP 100611 to 101211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,913 DEBUG Processing 70/561 atomic regions from SNP 20732 to 21332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,938 DEBUG Processing 64/596 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,985 DEBUG Processing 522/704 atomic regions from SNP 156440 to 157040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,001 DEBUG Processing 407/676 atomic regions from SNP 122038 to 122638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,078 DEBUG Processing 337/661 atomic regions from SNP 100911 to 101511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,092 DEBUG Processing 71/561 atomic regions from SNP 21032 to 21632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,124 DEBUG Processing 65/596 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,189 DEBUG Processing 523/704 atomic regions from SNP 156740 to 157340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,215 DEBUG Processing 408/676 atomic regions from SNP 122338 to 122938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,271 DEBUG Processing 338/661 atomic regions from SNP 101211 to 101811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,273 DEBUG Processing 72/561 atomic regions from SNP 21332 to 21932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,310 DEBUG Processing 66/596 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,391 DEBUG Processing 524/704 atomic regions from SNP 157040 to 157640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,419 DEBUG Processing 409/676 atomic regions from SNP 122638 to 123238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,461 DEBUG Processing 73/561 atomic regions from SNP 21632 to 22232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,465 DEBUG Processing 339/661 atomic regions from SNP 101511 to 102111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,499 DEBUG Processing 67/596 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,596 DEBUG Processing 525/704 atomic regions from SNP 157340 to 157940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,625 DEBUG Processing 410/676 atomic regions from SNP 122938 to 123538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,646 DEBUG Processing 74/561 atomic regions from SNP 21932 to 22532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,662 DEBUG Processing 340/661 atomic regions from SNP 101811 to 102411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,685 DEBUG Processing 68/596 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,801 DEBUG Processing 526/704 atomic regions from SNP 157640 to 158240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,827 DEBUG Processing 75/561 atomic regions from SNP 22232 to 22832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,829 DEBUG Processing 411/676 atomic regions from SNP 123238 to 123838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,857 DEBUG Processing 341/661 atomic regions from SNP 102111 to 102711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,872 DEBUG Processing 69/596 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,006 DEBUG Processing 527/704 atomic regions from SNP 157940 to 158540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,007 DEBUG Processing 76/561 atomic regions from SNP 22532 to 23132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,034 DEBUG Processing 412/676 atomic regions from SNP 123538 to 124138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,055 DEBUG Processing 342/661 atomic regions from SNP 102411 to 103011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,059 DEBUG Processing 70/596 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,189 DEBUG Processing 77/561 atomic regions from SNP 22832 to 23432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,212 DEBUG Processing 528/704 atomic regions from SNP 158240 to 158840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,239 DEBUG Processing 413/676 atomic regions from SNP 123838 to 124438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,248 DEBUG Processing 71/596 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,254 DEBUG Processing 343/661 atomic regions from SNP 102711 to 103311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,368 DEBUG Processing 78/561 atomic regions from SNP 23132 to 23732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,417 DEBUG Processing 529/704 atomic regions from SNP 158540 to 159140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,437 DEBUG Processing 72/596 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,444 DEBUG Processing 414/676 atomic regions from SNP 124138 to 124738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,450 DEBUG Processing 344/661 atomic regions from SNP 103011 to 103611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,543 DEBUG Processing 79/561 atomic regions from SNP 23432 to 24032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,620 DEBUG Processing 73/596 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,622 DEBUG Processing 530/704 atomic regions from SNP 158840 to 159440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,641 DEBUG Processing 415/676 atomic regions from SNP 124438 to 125038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,646 DEBUG Processing 345/661 atomic regions from SNP 103311 to 103911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,717 DEBUG Processing 80/561 atomic regions from SNP 23732 to 24332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,805 DEBUG Processing 74/596 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,827 DEBUG Processing 531/704 atomic regions from SNP 159140 to 159740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,843 DEBUG Processing 346/661 atomic regions from SNP 103611 to 104211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,845 DEBUG Processing 416/676 atomic regions from SNP 124738 to 125338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,891 DEBUG Processing 81/561 atomic regions from SNP 24032 to 24632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,988 DEBUG Processing 75/596 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,032 DEBUG Processing 532/704 atomic regions from SNP 159440 to 160040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,039 DEBUG Processing 347/661 atomic regions from SNP 103911 to 104511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,047 DEBUG Processing 417/676 atomic regions from SNP 125038 to 125638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,068 DEBUG Processing 82/561 atomic regions from SNP 24332 to 24932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,171 DEBUG Processing 76/596 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,235 DEBUG Processing 533/704 atomic regions from SNP 159740 to 160340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,237 DEBUG Processing 348/661 atomic regions from SNP 104211 to 104811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,246 DEBUG Processing 418/676 atomic regions from SNP 125338 to 125938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,261 DEBUG Processing 83/561 atomic regions from SNP 24632 to 25232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,351 DEBUG Processing 77/596 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,432 DEBUG Processing 349/661 atomic regions from SNP 104511 to 105111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,440 DEBUG Processing 534/704 atomic regions from SNP 160040 to 160640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,444 DEBUG Processing 419/676 atomic regions from SNP 125638 to 126238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,473 DEBUG Processing 84/561 atomic regions from SNP 24932 to 25532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,530 DEBUG Processing 78/596 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,630 DEBUG Processing 350/661 atomic regions from SNP 104811 to 105411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,642 DEBUG Processing 420/676 atomic regions from SNP 125938 to 126538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,668 DEBUG Processing 85/561 atomic regions from SNP 25232 to 25832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,669 DEBUG Processing 535/704 atomic regions from SNP 160340 to 160940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,709 DEBUG Processing 79/596 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,837 DEBUG Processing 351/661 atomic regions from SNP 105111 to 105711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,842 DEBUG Processing 421/676 atomic regions from SNP 126238 to 126838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,885 DEBUG Processing 86/561 atomic regions from SNP 25532 to 26132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,890 DEBUG Processing 80/596 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,912 DEBUG Processing 536/704 atomic regions from SNP 160640 to 161240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,039 DEBUG Processing 352/661 atomic regions from SNP 105411 to 106011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,045 DEBUG Processing 422/676 atomic regions from SNP 126538 to 127138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,074 DEBUG Processing 81/596 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,082 DEBUG Processing 87/561 atomic regions from SNP 25832 to 26432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,126 DEBUG Processing 537/704 atomic regions from SNP 160940 to 161540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,228 DEBUG Processing 353/661 atomic regions from SNP 105711 to 106311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,246 DEBUG Processing 423/676 atomic regions from SNP 126838 to 127438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,257 DEBUG Processing 82/596 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,281 DEBUG Processing 88/561 atomic regions from SNP 26132 to 26732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,330 DEBUG Processing 538/704 atomic regions from SNP 161240 to 161840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,416 DEBUG Processing 354/661 atomic regions from SNP 106011 to 106611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,441 DEBUG Processing 83/596 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,448 DEBUG Processing 424/676 atomic regions from SNP 127138 to 127738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,492 DEBUG Processing 89/561 atomic regions from SNP 26432 to 27032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,527 DEBUG Processing 539/704 atomic regions from SNP 161540 to 162140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,605 DEBUG Processing 355/661 atomic regions from SNP 106311 to 106911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,625 DEBUG Processing 84/596 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,652 DEBUG Processing 425/676 atomic regions from SNP 127438 to 128038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,698 DEBUG Processing 90/561 atomic regions from SNP 26732 to 27332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,749 DEBUG Processing 540/704 atomic regions from SNP 161840 to 162440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,793 DEBUG Processing 356/661 atomic regions from SNP 106611 to 107211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,808 DEBUG Processing 85/596 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,854 DEBUG Processing 426/676 atomic regions from SNP 127738 to 128338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,905 DEBUG Processing 91/561 atomic regions from SNP 27032 to 27632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,962 DEBUG Processing 541/704 atomic regions from SNP 162140 to 162740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,983 DEBUG Processing 357/661 atomic regions from SNP 106911 to 107511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,988 DEBUG Processing 86/596 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,057 DEBUG Processing 427/676 atomic regions from SNP 128038 to 128638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,112 DEBUG Processing 92/561 atomic regions from SNP 27332 to 27932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,172 DEBUG Processing 358/661 atomic regions from SNP 107211 to 107811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,172 DEBUG Processing 87/596 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,184 DEBUG Processing 542/704 atomic regions from SNP 162440 to 163040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,258 DEBUG Processing 428/676 atomic regions from SNP 128338 to 128938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,310 DEBUG Processing 93/561 atomic regions from SNP 27632 to 28232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,356 DEBUG Processing 88/596 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,373 DEBUG Processing 359/661 atomic regions from SNP 107511 to 108111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,401 DEBUG Processing 543/704 atomic regions from SNP 162740 to 163340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,470 DEBUG Processing 429/676 atomic regions from SNP 128638 to 129238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,509 DEBUG Processing 94/561 atomic regions from SNP 27932 to 28532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,540 DEBUG Processing 89/596 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,589 DEBUG Processing 360/661 atomic regions from SNP 107811 to 108411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,611 DEBUG Processing 544/704 atomic regions from SNP 163040 to 163640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,694 DEBUG Processing 95/561 atomic regions from SNP 28232 to 28832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,698 DEBUG Processing 430/676 atomic regions from SNP 128938 to 129538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,723 DEBUG Processing 90/596 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,801 DEBUG Processing 361/661 atomic regions from SNP 108111 to 108711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,835 DEBUG Processing 545/704 atomic regions from SNP 163340 to 163940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,878 DEBUG Processing 96/561 atomic regions from SNP 28532 to 29132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,905 DEBUG Processing 431/676 atomic regions from SNP 129238 to 129838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,910 DEBUG Processing 91/596 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,996 DEBUG Processing 362/661 atomic regions from SNP 108411 to 109011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,056 DEBUG Processing 546/704 atomic regions from SNP 163640 to 164240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,065 DEBUG Processing 97/561 atomic regions from SNP 28832 to 29432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,102 DEBUG Processing 92/596 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,113 DEBUG Processing 432/676 atomic regions from SNP 129538 to 130138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,204 DEBUG Processing 363/661 atomic regions from SNP 108711 to 109311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,249 DEBUG Processing 98/561 atomic regions from SNP 29132 to 29732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,266 DEBUG Processing 547/704 atomic regions from SNP 163940 to 164540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,295 DEBUG Processing 93/596 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,322 DEBUG Processing 433/676 atomic regions from SNP 129838 to 130438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,408 DEBUG Processing 364/661 atomic regions from SNP 109011 to 109611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,427 DEBUG Processing 99/561 atomic regions from SNP 29432 to 30032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,466 DEBUG Processing 548/704 atomic regions from SNP 164240 to 164840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,483 DEBUG Processing 94/596 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,529 DEBUG Processing 434/676 atomic regions from SNP 130138 to 130738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,602 DEBUG Processing 100/561 atomic regions from SNP 29732 to 30332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,604 DEBUG Processing 365/661 atomic regions from SNP 109311 to 109911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,663 DEBUG Processing 549/704 atomic regions from SNP 164540 to 165140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,670 DEBUG Processing 95/596 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,735 DEBUG Processing 435/676 atomic regions from SNP 130438 to 131038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,779 DEBUG Processing 101/561 atomic regions from SNP 30032 to 30632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,804 DEBUG Processing 366/661 atomic regions from SNP 109611 to 110211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,854 DEBUG Processing 96/596 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,862 DEBUG Processing 550/704 atomic regions from SNP 164840 to 165440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,941 DEBUG Processing 436/676 atomic regions from SNP 130738 to 131338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,962 DEBUG Processing 102/561 atomic regions from SNP 30332 to 30932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,995 DEBUG Processing 367/661 atomic regions from SNP 109911 to 110511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,038 DEBUG Processing 97/596 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,076 DEBUG Processing 551/704 atomic regions from SNP 165140 to 165740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,158 DEBUG Processing 437/676 atomic regions from SNP 131038 to 131638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,164 DEBUG Processing 103/561 atomic regions from SNP 30632 to 31232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,189 DEBUG Processing 368/661 atomic regions from SNP 110211 to 110811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,222 DEBUG Processing 98/596 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,307 DEBUG Processing 552/704 atomic regions from SNP 165440 to 166040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,366 DEBUG Processing 438/676 atomic regions from SNP 131338 to 131938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,381 DEBUG Processing 369/661 atomic regions from SNP 110511 to 111111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,382 DEBUG Processing 104/561 atomic regions from SNP 30932 to 31532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,407 DEBUG Processing 99/596 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,539 DEBUG Processing 553/704 atomic regions from SNP 165740 to 166340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,574 DEBUG Processing 370/661 atomic regions from SNP 110811 to 111411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,578 DEBUG Processing 439/676 atomic regions from SNP 131638 to 132238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,595 DEBUG Processing 105/561 atomic regions from SNP 31232 to 31832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,601 DEBUG Processing 100/596 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,768 DEBUG Processing 554/704 atomic regions from SNP 166040 to 166640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,783 DEBUG Processing 106/561 atomic regions from SNP 31532 to 32132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,792 DEBUG Processing 371/661 atomic regions from SNP 111111 to 111711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,793 DEBUG Processing 440/676 atomic regions from SNP 131938 to 132538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,797 DEBUG Processing 101/596 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,968 DEBUG Processing 107/561 atomic regions from SNP 31832 to 32432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,988 DEBUG Processing 372/661 atomic regions from SNP 111411 to 112011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,988 DEBUG Processing 102/596 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,998 DEBUG Processing 555/704 atomic regions from SNP 166340 to 166940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,003 DEBUG Processing 441/676 atomic regions from SNP 132238 to 132838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,173 DEBUG Processing 108/561 atomic regions from SNP 32132 to 32732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,177 DEBUG Processing 103/596 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,179 DEBUG Processing 373/661 atomic regions from SNP 111711 to 112311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,210 DEBUG Processing 442/676 atomic regions from SNP 132538 to 133138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,231 DEBUG Processing 556/704 atomic regions from SNP 166640 to 167240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,365 DEBUG Processing 104/596 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,372 DEBUG Processing 374/661 atomic regions from SNP 112011 to 112611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,376 DEBUG Processing 109/561 atomic regions from SNP 32432 to 33032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,417 DEBUG Processing 443/676 atomic regions from SNP 132838 to 133438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,467 DEBUG Processing 557/704 atomic regions from SNP 166940 to 167540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,551 DEBUG Processing 105/596 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,555 DEBUG Processing 110/561 atomic regions from SNP 32732 to 33332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,563 DEBUG Processing 375/661 atomic regions from SNP 112311 to 112911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,620 DEBUG Processing 444/676 atomic regions from SNP 133138 to 133738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,700 DEBUG Processing 558/704 atomic regions from SNP 167240 to 167840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,735 DEBUG Processing 111/561 atomic regions from SNP 33032 to 33632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,739 DEBUG Processing 106/596 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,756 DEBUG Processing 376/661 atomic regions from SNP 112611 to 113211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,845 DEBUG Processing 445/676 atomic regions from SNP 133438 to 134038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,923 DEBUG Processing 112/561 atomic regions from SNP 33332 to 33932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,929 DEBUG Processing 107/596 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,933 DEBUG Processing 559/704 atomic regions from SNP 167540 to 168140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,963 DEBUG Processing 377/661 atomic regions from SNP 112911 to 113511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,058 DEBUG Processing 446/676 atomic regions from SNP 133738 to 134338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,113 DEBUG Processing 113/561 atomic regions from SNP 33632 to 34232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,120 DEBUG Processing 108/596 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,148 DEBUG Processing 560/704 atomic regions from SNP 167840 to 168440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,186 DEBUG Processing 378/661 atomic regions from SNP 113211 to 113811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,271 DEBUG Processing 447/676 atomic regions from SNP 134038 to 134638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,302 DEBUG Processing 114/561 atomic regions from SNP 33932 to 34532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,310 DEBUG Processing 109/596 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,372 DEBUG Processing 561/704 atomic regions from SNP 168140 to 168740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,382 DEBUG Processing 379/661 atomic regions from SNP 113511 to 114111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,473 DEBUG Processing 448/676 atomic regions from SNP 134338 to 134938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,501 DEBUG Processing 110/596 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,503 DEBUG Processing 115/561 atomic regions from SNP 34232 to 34832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,583 DEBUG Processing 380/661 atomic regions from SNP 113811 to 114411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,607 DEBUG Processing 562/704 atomic regions from SNP 168440 to 169040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,680 DEBUG Processing 449/676 atomic regions from SNP 134638 to 135238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,691 DEBUG Processing 111/596 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,701 DEBUG Processing 116/561 atomic regions from SNP 34532 to 35132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,792 DEBUG Processing 381/661 atomic regions from SNP 114111 to 114711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,844 DEBUG Processing 563/704 atomic regions from SNP 168740 to 169340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,875 DEBUG Processing 112/596 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,885 DEBUG Processing 117/561 atomic regions from SNP 34832 to 35432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,907 DEBUG Processing 450/676 atomic regions from SNP 134938 to 135538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,012 DEBUG Processing 382/661 atomic regions from SNP 114411 to 115011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,060 DEBUG Processing 113/596 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,066 DEBUG Processing 118/561 atomic regions from SNP 35132 to 35732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,077 DEBUG Processing 564/704 atomic regions from SNP 169040 to 169640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,134 DEBUG Processing 451/676 atomic regions from SNP 135238 to 135838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,214 DEBUG Processing 383/661 atomic regions from SNP 114711 to 115311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,244 DEBUG Processing 114/596 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,268 DEBUG Processing 119/561 atomic regions from SNP 35432 to 36032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,309 DEBUG Processing 565/704 atomic regions from SNP 169340 to 169940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,337 DEBUG Processing 452/676 atomic regions from SNP 135538 to 136138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,411 DEBUG Processing 384/661 atomic regions from SNP 115011 to 115611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,432 DEBUG Processing 115/596 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,449 DEBUG Processing 120/561 atomic regions from SNP 35732 to 36332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,513 DEBUG Processing 566/704 atomic regions from SNP 169640 to 170240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,538 DEBUG Processing 453/676 atomic regions from SNP 135838 to 136438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,611 DEBUG Processing 385/661 atomic regions from SNP 115311 to 115911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,623 DEBUG Processing 116/596 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,633 DEBUG Processing 121/561 atomic regions from SNP 36032 to 36632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,709 DEBUG Processing 567/704 atomic regions from SNP 169940 to 170540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,741 DEBUG Processing 454/676 atomic regions from SNP 136138 to 136738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,811 DEBUG Processing 386/661 atomic regions from SNP 115611 to 116211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,818 DEBUG Processing 122/561 atomic regions from SNP 36332 to 36932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,818 DEBUG Processing 117/596 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,910 DEBUG Processing 568/704 atomic regions from SNP 170240 to 170840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,943 DEBUG Processing 455/676 atomic regions from SNP 136438 to 137038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,006 DEBUG Processing 123/561 atomic regions from SNP 36632 to 37232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,009 DEBUG Processing 387/661 atomic regions from SNP 115911 to 116511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,014 DEBUG Processing 118/596 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,112 DEBUG Processing 569/704 atomic regions from SNP 170540 to 171140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,147 DEBUG Processing 456/676 atomic regions from SNP 136738 to 137338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,194 DEBUG Processing 124/561 atomic regions from SNP 36932 to 37532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,207 DEBUG Processing 388/661 atomic regions from SNP 116211 to 116811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,208 DEBUG Processing 119/596 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,311 DEBUG Processing 570/704 atomic regions from SNP 170840 to 171440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,352 DEBUG Processing 457/676 atomic regions from SNP 137038 to 137638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,381 DEBUG Processing 125/561 atomic regions from SNP 37232 to 37832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,402 DEBUG Processing 120/596 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,409 DEBUG Processing 389/661 atomic regions from SNP 116511 to 117111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,512 DEBUG Processing 571/704 atomic regions from SNP 171140 to 171740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,557 DEBUG Processing 458/676 atomic regions from SNP 137338 to 137938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,566 DEBUG Processing 126/561 atomic regions from SNP 37532 to 38132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,593 DEBUG Processing 121/596 atomic regions from SNP 36120 to 36721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,614 DEBUG Processing 390/661 atomic regions from SNP 116811 to 117411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,714 DEBUG Processing 572/704 atomic regions from SNP 171440 to 172040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,752 DEBUG Processing 127/561 atomic regions from SNP 37832 to 38432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,765 DEBUG Processing 459/676 atomic regions from SNP 137638 to 138238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,787 DEBUG Processing 122/596 atomic regions from SNP 36421 to 37022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,813 DEBUG Processing 391/661 atomic regions from SNP 117111 to 117711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,938 DEBUG Processing 128/561 atomic regions from SNP 38132 to 38732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,938 DEBUG Processing 573/704 atomic regions from SNP 171740 to 172340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,974 DEBUG Processing 460/676 atomic regions from SNP 137938 to 138538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,976 DEBUG Processing 123/596 atomic regions from SNP 36722 to 37322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,012 DEBUG Processing 392/661 atomic regions from SNP 117411 to 118011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,121 DEBUG Processing 129/561 atomic regions from SNP 38432 to 39032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,158 DEBUG Processing 574/704 atomic regions from SNP 172040 to 172640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,169 DEBUG Processing 124/596 atomic regions from SNP 37022 to 37622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,183 DEBUG Processing 461/676 atomic regions from SNP 138238 to 138838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,211 DEBUG Processing 393/661 atomic regions from SNP 117711 to 118311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,307 DEBUG Processing 130/561 atomic regions from SNP 38732 to 39332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,361 DEBUG Processing 125/596 atomic regions from SNP 37322 to 37922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,387 DEBUG Processing 575/704 atomic regions from SNP 172340 to 172940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,408 DEBUG Processing 394/661 atomic regions from SNP 118011 to 118611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,418 DEBUG Processing 462/676 atomic regions from SNP 138538 to 139138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,495 DEBUG Processing 131/561 atomic regions from SNP 39032 to 39632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,559 DEBUG Processing 126/596 atomic regions from SNP 37622 to 38222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,610 DEBUG Processing 395/661 atomic regions from SNP 118311 to 118911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,618 DEBUG Processing 576/704 atomic regions from SNP 172640 to 173240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,641 DEBUG Processing 463/676 atomic regions from SNP 138838 to 139438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,684 DEBUG Processing 132/561 atomic regions from SNP 39332 to 39932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,750 DEBUG Processing 127/596 atomic regions from SNP 37922 to 38522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,815 DEBUG Processing 396/661 atomic regions from SNP 118611 to 119211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,852 DEBUG Processing 464/676 atomic regions from SNP 139138 to 139738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,856 DEBUG Processing 577/704 atomic regions from SNP 172940 to 173540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,871 DEBUG Processing 133/561 atomic regions from SNP 39632 to 40232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,942 DEBUG Processing 128/596 atomic regions from SNP 38222 to 38822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,018 DEBUG Processing 397/661 atomic regions from SNP 118911 to 119511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,059 DEBUG Processing 134/561 atomic regions from SNP 39932 to 40532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,060 DEBUG Processing 465/676 atomic regions from SNP 139438 to 140038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,102 DEBUG Processing 578/704 atomic regions from SNP 173240 to 173840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,131 DEBUG Processing 129/596 atomic regions from SNP 38522 to 39122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,213 DEBUG Processing 398/661 atomic regions from SNP 119211 to 119811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,241 DEBUG Processing 135/561 atomic regions from SNP 40232 to 40832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,266 DEBUG Processing 466/676 atomic regions from SNP 139738 to 140338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,319 DEBUG Processing 130/596 atomic regions from SNP 38822 to 39422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,340 DEBUG Processing 579/704 atomic regions from SNP 173540 to 174140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,413 DEBUG Processing 399/661 atomic regions from SNP 119511 to 120111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,423 DEBUG Processing 136/561 atomic regions from SNP 40532 to 41132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,472 DEBUG Processing 467/676 atomic regions from SNP 140038 to 140638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,508 DEBUG Processing 131/596 atomic regions from SNP 39122 to 39722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,572 DEBUG Processing 580/704 atomic regions from SNP 173840 to 174440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,607 DEBUG Processing 137/561 atomic regions from SNP 40832 to 41432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,614 DEBUG Processing 400/661 atomic regions from SNP 119811 to 120411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,682 DEBUG Processing 468/676 atomic regions from SNP 140338 to 140938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,700 DEBUG Processing 132/596 atomic regions from SNP 39422 to 40022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,794 DEBUG Processing 138/561 atomic regions from SNP 41132 to 41732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,815 DEBUG Processing 581/704 atomic regions from SNP 174140 to 174740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,826 DEBUG Processing 401/661 atomic regions from SNP 120111 to 120711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,889 DEBUG Processing 133/596 atomic regions from SNP 39722 to 40322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,890 DEBUG Processing 469/676 atomic regions from SNP 140638 to 141238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,977 DEBUG Processing 139/561 atomic regions from SNP 41432 to 42032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,032 DEBUG Processing 402/661 atomic regions from SNP 120411 to 121011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,047 DEBUG Processing 582/704 atomic regions from SNP 174440 to 175040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,080 DEBUG Processing 134/596 atomic regions from SNP 40022 to 40622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,098 DEBUG Processing 470/676 atomic regions from SNP 140938 to 141538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,157 DEBUG Processing 140/561 atomic regions from SNP 41732 to 42332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,247 DEBUG Processing 403/661 atomic regions from SNP 120711 to 121311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,265 DEBUG Processing 583/704 atomic regions from SNP 174740 to 175340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,271 DEBUG Processing 135/596 atomic regions from SNP 40322 to 40922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,306 DEBUG Processing 471/676 atomic regions from SNP 141238 to 141838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,338 DEBUG Processing 141/561 atomic regions from SNP 42032 to 42632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,460 DEBUG Processing 136/596 atomic regions from SNP 40622 to 41222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,473 DEBUG Processing 404/661 atomic regions from SNP 121011 to 121611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,499 DEBUG Processing 584/704 atomic regions from SNP 175040 to 175640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,515 DEBUG Processing 472/676 atomic regions from SNP 141538 to 142138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,520 DEBUG Processing 142/561 atomic regions from SNP 42332 to 42932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,650 DEBUG Processing 137/596 atomic regions from SNP 40922 to 41522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,700 DEBUG Processing 405/661 atomic regions from SNP 121311 to 121911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,710 DEBUG Processing 143/561 atomic regions from SNP 42632 to 43232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,730 DEBUG Processing 473/676 atomic regions from SNP 141838 to 142438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,744 DEBUG Processing 585/704 atomic regions from SNP 175340 to 175940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,845 DEBUG Processing 138/596 atomic regions from SNP 41222 to 41822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,906 DEBUG Processing 144/561 atomic regions from SNP 42932 to 43532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,949 DEBUG Processing 406/661 atomic regions from SNP 121611 to 122211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,955 DEBUG Processing 474/676 atomic regions from SNP 142138 to 142738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,001 DEBUG Processing 586/704 atomic regions from SNP 175640 to 176240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,038 DEBUG Processing 139/596 atomic regions from SNP 41522 to 42122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,096 DEBUG Processing 145/561 atomic regions from SNP 43232 to 43832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,167 DEBUG Processing 475/676 atomic regions from SNP 142438 to 143038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,186 DEBUG Processing 407/661 atomic regions from SNP 121911 to 122511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,230 DEBUG Processing 587/704 atomic regions from SNP 175940 to 176540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,230 DEBUG Processing 140/596 atomic regions from SNP 41822 to 42422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,283 DEBUG Processing 146/561 atomic regions from SNP 43532 to 44132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,377 DEBUG Processing 476/676 atomic regions from SNP 142738 to 143338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,410 DEBUG Processing 408/661 atomic regions from SNP 122211 to 122811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,445 DEBUG Processing 141/596 atomic regions from SNP 42122 to 42722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,446 DEBUG Processing 588/704 atomic regions from SNP 176240 to 176840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,467 DEBUG Processing 147/561 atomic regions from SNP 43832 to 44432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,594 DEBUG Processing 477/676 atomic regions from SNP 143038 to 143638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,616 DEBUG Processing 409/661 atomic regions from SNP 122511 to 123111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,652 DEBUG Processing 148/561 atomic regions from SNP 44132 to 44732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,657 DEBUG Processing 142/596 atomic regions from SNP 42422 to 43022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,676 DEBUG Processing 589/704 atomic regions from SNP 176540 to 177140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,804 DEBUG Processing 478/676 atomic regions from SNP 143338 to 143938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,818 DEBUG Processing 410/661 atomic regions from SNP 122811 to 123411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,836 DEBUG Processing 149/561 atomic regions from SNP 44432 to 45032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,848 DEBUG Processing 143/596 atomic regions from SNP 42722 to 43322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,911 DEBUG Processing 590/704 atomic regions from SNP 176840 to 177440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,012 DEBUG Processing 479/676 atomic regions from SNP 143638 to 144238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,018 DEBUG Processing 411/661 atomic regions from SNP 123111 to 123711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,026 DEBUG Processing 150/561 atomic regions from SNP 44732 to 45332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,037 DEBUG Processing 144/596 atomic regions from SNP 43022 to 43622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,147 DEBUG Processing 591/704 atomic regions from SNP 177140 to 177740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,213 DEBUG Processing 151/561 atomic regions from SNP 45032 to 45632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,217 DEBUG Processing 412/661 atomic regions from SNP 123411 to 124011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,224 DEBUG Processing 480/676 atomic regions from SNP 143938 to 144538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,227 DEBUG Processing 145/596 atomic regions from SNP 43322 to 43922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,354 DEBUG Processing 592/704 atomic regions from SNP 177440 to 178040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,399 DEBUG Processing 152/561 atomic regions from SNP 45332 to 45932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,416 DEBUG Processing 413/661 atomic regions from SNP 123711 to 124311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,421 DEBUG Processing 146/596 atomic regions from SNP 43622 to 44222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,439 DEBUG Processing 481/676 atomic regions from SNP 144238 to 144838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,571 DEBUG Processing 593/704 atomic regions from SNP 177740 to 178340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,584 DEBUG Processing 153/561 atomic regions from SNP 45632 to 46232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,612 DEBUG Processing 147/596 atomic regions from SNP 43922 to 44522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,617 DEBUG Processing 414/661 atomic regions from SNP 124011 to 124611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,649 DEBUG Processing 482/676 atomic regions from SNP 144538 to 145138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,767 DEBUG Processing 154/561 atomic regions from SNP 45932 to 46532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,785 DEBUG Processing 594/704 atomic regions from SNP 178040 to 178640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,805 DEBUG Processing 148/596 atomic regions from SNP 44222 to 44822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,820 DEBUG Processing 415/661 atomic regions from SNP 124311 to 124911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,864 DEBUG Processing 483/676 atomic regions from SNP 144838 to 145438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,946 DEBUG Processing 155/561 atomic regions from SNP 46232 to 46832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,997 DEBUG Processing 595/704 atomic regions from SNP 178340 to 178940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,003 DEBUG Processing 149/596 atomic regions from SNP 44522 to 45122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,022 DEBUG Processing 416/661 atomic regions from SNP 124611 to 125211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,074 DEBUG Processing 484/676 atomic regions from SNP 145138 to 145738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,126 DEBUG Processing 156/561 atomic regions from SNP 46532 to 47132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,188 DEBUG Processing 150/596 atomic regions from SNP 44822 to 45422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,208 DEBUG Processing 596/704 atomic regions from SNP 178640 to 179240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,226 DEBUG Processing 417/661 atomic regions from SNP 124911 to 125511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,281 DEBUG Processing 485/676 atomic regions from SNP 145438 to 146038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,309 DEBUG Processing 157/561 atomic regions from SNP 46832 to 47432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,377 DEBUG Processing 151/596 atomic regions from SNP 45122 to 45722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,421 DEBUG Processing 597/704 atomic regions from SNP 178940 to 179540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,434 DEBUG Processing 418/661 atomic regions from SNP 125211 to 125811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,493 DEBUG Processing 486/676 atomic regions from SNP 145738 to 146338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,496 DEBUG Processing 158/561 atomic regions from SNP 47132 to 47732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,564 DEBUG Processing 152/596 atomic regions from SNP 45422 to 46022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,636 DEBUG Processing 598/704 atomic regions from SNP 179240 to 179840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,640 DEBUG Processing 419/661 atomic regions from SNP 125511 to 126111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,681 DEBUG Processing 159/561 atomic regions from SNP 47432 to 48032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,704 DEBUG Processing 487/676 atomic regions from SNP 146038 to 146638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,753 DEBUG Processing 153/596 atomic regions from SNP 45722 to 46322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,848 DEBUG Processing 420/661 atomic regions from SNP 125811 to 126411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,850 DEBUG Processing 599/704 atomic regions from SNP 179540 to 180140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,867 DEBUG Processing 160/561 atomic regions from SNP 47732 to 48332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,918 DEBUG Processing 488/676 atomic regions from SNP 146338 to 146938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,950 DEBUG Processing 154/596 atomic regions from SNP 46022 to 46622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,052 DEBUG Processing 161/561 atomic regions from SNP 48032 to 48632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,053 DEBUG Processing 421/661 atomic regions from SNP 126111 to 126711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,063 DEBUG Processing 600/704 atomic regions from SNP 179840 to 180440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,130 DEBUG Processing 489/676 atomic regions from SNP 146638 to 147238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,144 DEBUG Processing 155/596 atomic regions from SNP 46322 to 46922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,235 DEBUG Processing 162/561 atomic regions from SNP 48332 to 48932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,258 DEBUG Processing 422/661 atomic regions from SNP 126411 to 127011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,274 DEBUG Processing 601/704 atomic regions from SNP 180140 to 180740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,335 DEBUG Processing 156/596 atomic regions from SNP 46622 to 47222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,343 DEBUG Processing 490/676 atomic regions from SNP 146938 to 147538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,419 DEBUG Processing 163/561 atomic regions from SNP 48632 to 49232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,460 DEBUG Processing 423/661 atomic regions from SNP 126711 to 127311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,483 DEBUG Processing 602/704 atomic regions from SNP 180440 to 181040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,525 DEBUG Processing 157/596 atomic regions from SNP 46922 to 47522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,553 DEBUG Processing 491/676 atomic regions from SNP 147238 to 147838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,620 DEBUG Processing 164/561 atomic regions from SNP 48932 to 49532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,658 DEBUG Processing 424/661 atomic regions from SNP 127011 to 127611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,713 DEBUG Processing 158/596 atomic regions from SNP 47222 to 47822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,716 DEBUG Processing 603/704 atomic regions from SNP 180740 to 181340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,763 DEBUG Processing 492/676 atomic regions from SNP 147538 to 148138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,810 DEBUG Processing 165/561 atomic regions from SNP 49232 to 49832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,855 DEBUG Processing 425/661 atomic regions from SNP 127311 to 127911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,901 DEBUG Processing 159/596 atomic regions from SNP 47522 to 48122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,941 DEBUG Processing 604/704 atomic regions from SNP 181040 to 181640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,970 DEBUG Processing 493/676 atomic regions from SNP 147838 to 148438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,998 DEBUG Processing 166/561 atomic regions from SNP 49532 to 50132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,066 DEBUG Processing 426/661 atomic regions from SNP 127611 to 128211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,086 DEBUG Processing 160/596 atomic regions from SNP 47822 to 48422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,162 DEBUG Processing 605/704 atomic regions from SNP 181340 to 181940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,181 DEBUG Processing 494/676 atomic regions from SNP 148138 to 148738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,189 DEBUG Processing 167/561 atomic regions from SNP 49832 to 50432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,276 DEBUG Processing 161/596 atomic regions from SNP 48122 to 48722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,291 DEBUG Processing 427/661 atomic regions from SNP 127911 to 128511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,371 DEBUG Processing 606/704 atomic regions from SNP 181640 to 182240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,387 DEBUG Processing 168/561 atomic regions from SNP 50132 to 50732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,390 DEBUG Processing 495/676 atomic regions from SNP 148438 to 149038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,466 DEBUG Processing 162/596 atomic regions from SNP 48422 to 49022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,497 DEBUG Processing 428/661 atomic regions from SNP 128211 to 128811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,580 DEBUG Processing 169/561 atomic regions from SNP 50432 to 51032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,582 DEBUG Processing 607/704 atomic regions from SNP 181940 to 182540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,600 DEBUG Processing 496/676 atomic regions from SNP 148738 to 149338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,659 DEBUG Processing 163/596 atomic regions from SNP 48722 to 49322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,711 DEBUG Processing 429/661 atomic regions from SNP 128511 to 129111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,780 DEBUG Processing 170/561 atomic regions from SNP 50732 to 51332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,802 DEBUG Processing 608/704 atomic regions from SNP 182240 to 182840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,809 DEBUG Processing 497/676 atomic regions from SNP 149038 to 149638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,855 DEBUG Processing 164/596 atomic regions from SNP 49022 to 49622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,934 DEBUG Processing 430/661 atomic regions from SNP 128811 to 129411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,975 DEBUG Processing 171/561 atomic regions from SNP 51032 to 51632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,019 DEBUG Processing 498/676 atomic regions from SNP 149338 to 149938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,030 DEBUG Processing 609/704 atomic regions from SNP 182540 to 183140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,070 DEBUG Processing 165/596 atomic regions from SNP 49322 to 49922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,152 DEBUG Processing 431/661 atomic regions from SNP 129111 to 129711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,158 DEBUG Processing 172/561 atomic regions from SNP 51332 to 51932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,225 DEBUG Processing 499/676 atomic regions from SNP 149638 to 150238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,256 DEBUG Processing 610/704 atomic regions from SNP 182840 to 183440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,277 DEBUG Processing 166/596 atomic regions from SNP 49622 to 50222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,350 DEBUG Processing 173/561 atomic regions from SNP 51632 to 52232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,355 DEBUG Processing 432/661 atomic regions from SNP 129411 to 130011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,447 DEBUG Processing 500/676 atomic regions from SNP 149938 to 150538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,472 DEBUG Processing 167/596 atomic regions from SNP 49922 to 50522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,482 DEBUG Processing 611/704 atomic regions from SNP 183140 to 183740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,552 DEBUG Processing 433/661 atomic regions from SNP 129711 to 130311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,559 DEBUG Processing 174/561 atomic regions from SNP 51932 to 52532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,654 DEBUG Processing 501/676 atomic regions from SNP 150238 to 150838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,665 DEBUG Processing 168/596 atomic regions from SNP 50222 to 50822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,710 DEBUG Processing 612/704 atomic regions from SNP 183440 to 184040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,748 DEBUG Processing 434/661 atomic regions from SNP 130011 to 130611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,754 DEBUG Processing 175/561 atomic regions from SNP 52232 to 52832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,856 DEBUG Processing 169/596 atomic regions from SNP 50522 to 51122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,865 DEBUG Processing 502/676 atomic regions from SNP 150538 to 151138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,931 DEBUG Processing 613/704 atomic regions from SNP 183740 to 184340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,946 DEBUG Processing 435/661 atomic regions from SNP 130311 to 130911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,964 DEBUG Processing 176/561 atomic regions from SNP 52532 to 53132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,047 DEBUG Processing 170/596 atomic regions from SNP 50822 to 51422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,100 DEBUG Processing 503/676 atomic regions from SNP 150838 to 151438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,143 DEBUG Processing 436/661 atomic regions from SNP 130611 to 131211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,160 DEBUG Processing 614/704 atomic regions from SNP 184040 to 184640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,183 DEBUG Processing 177/561 atomic regions from SNP 52832 to 53432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,239 DEBUG Processing 171/596 atomic regions from SNP 51122 to 51722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,319 DEBUG Processing 504/676 atomic regions from SNP 151138 to 151738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,335 DEBUG Processing 437/661 atomic regions from SNP 130911 to 131511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,380 DEBUG Processing 615/704 atomic regions from SNP 184340 to 184940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,398 DEBUG Processing 178/561 atomic regions from SNP 53132 to 53732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,433 DEBUG Processing 172/596 atomic regions from SNP 51422 to 52022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,525 DEBUG Processing 438/661 atomic regions from SNP 131211 to 131811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,530 DEBUG Processing 505/676 atomic regions from SNP 151438 to 152038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,588 DEBUG Processing 616/704 atomic regions from SNP 184640 to 185240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,608 DEBUG Processing 179/561 atomic regions from SNP 53432 to 54032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,627 DEBUG Processing 173/596 atomic regions from SNP 51722 to 52322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,715 DEBUG Processing 439/661 atomic regions from SNP 131511 to 132111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,748 DEBUG Processing 506/676 atomic regions from SNP 151738 to 152338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,813 DEBUG Processing 617/704 atomic regions from SNP 184940 to 185540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,819 DEBUG Processing 180/561 atomic regions from SNP 53732 to 54332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,822 DEBUG Processing 174/596 atomic regions from SNP 52022 to 52622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,909 DEBUG Processing 440/661 atomic regions from SNP 131811 to 132411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,967 DEBUG Processing 507/676 atomic regions from SNP 152038 to 152638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,008 DEBUG Processing 181/561 atomic regions from SNP 54032 to 54632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,017 DEBUG Processing 175/596 atomic regions from SNP 52322 to 52922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,020 DEBUG Processing 618/704 atomic regions from SNP 185240 to 185840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,107 DEBUG Processing 441/661 atomic regions from SNP 132111 to 132711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,172 DEBUG Processing 508/676 atomic regions from SNP 152338 to 152938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,195 DEBUG Processing 182/561 atomic regions from SNP 54332 to 54932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,210 DEBUG Processing 176/596 atomic regions from SNP 52622 to 53222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,219 DEBUG Processing 619/704 atomic regions from SNP 185540 to 186140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,309 DEBUG Processing 442/661 atomic regions from SNP 132411 to 133011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,382 DEBUG Processing 509/676 atomic regions from SNP 152638 to 153238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,383 DEBUG Processing 183/561 atomic regions from SNP 54632 to 55232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,404 DEBUG Processing 177/596 atomic regions from SNP 52922 to 53522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,418 DEBUG Processing 620/704 atomic regions from SNP 185840 to 186440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,511 DEBUG Processing 443/661 atomic regions from SNP 132711 to 133311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,570 DEBUG Processing 184/561 atomic regions from SNP 54932 to 55532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,596 DEBUG Processing 510/676 atomic regions from SNP 152938 to 153538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,596 DEBUG Processing 178/596 atomic regions from SNP 53222 to 53822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,616 DEBUG Processing 621/704 atomic regions from SNP 186140 to 186740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,712 DEBUG Processing 444/661 atomic regions from SNP 133011 to 133611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,758 DEBUG Processing 185/561 atomic regions from SNP 55232 to 55832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,791 DEBUG Processing 179/596 atomic regions from SNP 53522 to 54122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,808 DEBUG Processing 511/676 atomic regions from SNP 153238 to 153838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,826 DEBUG Processing 622/704 atomic regions from SNP 186440 to 187040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,930 DEBUG Processing 445/661 atomic regions from SNP 133311 to 133911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,966 DEBUG Processing 186/561 atomic regions from SNP 55532 to 56132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,985 DEBUG Processing 180/596 atomic regions from SNP 53822 to 54422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,026 DEBUG Processing 512/676 atomic regions from SNP 153538 to 154138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,031 DEBUG Processing 623/704 atomic regions from SNP 186740 to 187340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,147 DEBUG Processing 446/661 atomic regions from SNP 133611 to 134211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,155 DEBUG Processing 187/561 atomic regions from SNP 55832 to 56432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,182 DEBUG Processing 181/596 atomic regions from SNP 54122 to 54722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,238 DEBUG Processing 624/704 atomic regions from SNP 187040 to 187640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,261 DEBUG Processing 513/676 atomic regions from SNP 153838 to 154438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,342 DEBUG Processing 188/561 atomic regions from SNP 56132 to 56732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,370 DEBUG Processing 447/661 atomic regions from SNP 133911 to 134511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,384 DEBUG Processing 182/596 atomic regions from SNP 54422 to 55022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,441 DEBUG Processing 625/704 atomic regions from SNP 187340 to 187940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,495 DEBUG Processing 514/676 atomic regions from SNP 154138 to 154738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,527 DEBUG Processing 189/561 atomic regions from SNP 56432 to 57032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,577 DEBUG Processing 183/596 atomic regions from SNP 54722 to 55322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,599 DEBUG Processing 448/661 atomic regions from SNP 134211 to 134811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,644 DEBUG Processing 626/704 atomic regions from SNP 187640 to 188240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,709 DEBUG Processing 190/561 atomic regions from SNP 56732 to 57332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,709 DEBUG Processing 515/676 atomic regions from SNP 154438 to 155038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,768 DEBUG Processing 184/596 atomic regions from SNP 55022 to 55622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,821 DEBUG Processing 449/661 atomic regions from SNP 134511 to 135111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,847 DEBUG Processing 627/704 atomic regions from SNP 187940 to 188540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,900 DEBUG Processing 191/561 atomic regions from SNP 57032 to 57632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,923 DEBUG Processing 516/676 atomic regions from SNP 154738 to 155338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,961 DEBUG Processing 185/596 atomic regions from SNP 55322 to 55922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,026 DEBUG Processing 450/661 atomic regions from SNP 134811 to 135411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,052 DEBUG Processing 628/704 atomic regions from SNP 188240 to 188840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,089 DEBUG Processing 192/561 atomic regions from SNP 57332 to 57932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,137 DEBUG Processing 517/676 atomic regions from SNP 155038 to 155638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,164 DEBUG Processing 186/596 atomic regions from SNP 55622 to 56222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,238 DEBUG Processing 451/661 atomic regions from SNP 135111 to 135711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,273 DEBUG Processing 193/561 atomic regions from SNP 57632 to 58232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,277 DEBUG Processing 629/704 atomic regions from SNP 188540 to 189140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,368 DEBUG Processing 518/676 atomic regions from SNP 155338 to 155938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,376 DEBUG Processing 187/596 atomic regions from SNP 55922 to 56522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,453 DEBUG Processing 194/561 atomic regions from SNP 57932 to 58532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,466 DEBUG Processing 452/661 atomic regions from SNP 135411 to 136011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,495 DEBUG Processing 630/704 atomic regions from SNP 188840 to 189440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,572 DEBUG Processing 188/596 atomic regions from SNP 56222 to 56822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,588 DEBUG Processing 519/676 atomic regions from SNP 155638 to 156238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,636 DEBUG Processing 195/561 atomic regions from SNP 58232 to 58832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,686 DEBUG Processing 453/661 atomic regions from SNP 135711 to 136311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,703 DEBUG Processing 631/704 atomic regions from SNP 189140 to 189740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,764 DEBUG Processing 189/596 atomic regions from SNP 56522 to 57122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,801 DEBUG Processing 520/676 atomic regions from SNP 155938 to 156538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,823 DEBUG Processing 196/561 atomic regions from SNP 58532 to 59132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,892 DEBUG Processing 454/661 atomic regions from SNP 136011 to 136611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,908 DEBUG Processing 632/704 atomic regions from SNP 189440 to 190040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,965 DEBUG Processing 190/596 atomic regions from SNP 56822 to 57422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,012 DEBUG Processing 521/676 atomic regions from SNP 156238 to 156838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,020 DEBUG Processing 197/561 atomic regions from SNP 58832 to 59432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,105 DEBUG Processing 455/661 atomic regions from SNP 136311 to 136911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,113 DEBUG Processing 633/704 atomic regions from SNP 189740 to 190340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,163 DEBUG Processing 191/596 atomic regions from SNP 57122 to 57722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,229 DEBUG Processing 522/676 atomic regions from SNP 156538 to 157138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,233 DEBUG Processing 198/561 atomic regions from SNP 59132 to 59732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,322 DEBUG Processing 634/704 atomic regions from SNP 190040 to 190640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,335 DEBUG Processing 456/661 atomic regions from SNP 136611 to 137211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,379 DEBUG Processing 192/596 atomic regions from SNP 57422 to 58022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,437 DEBUG Processing 199/561 atomic regions from SNP 59432 to 60032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,443 DEBUG Processing 523/676 atomic regions from SNP 156838 to 157438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,530 DEBUG Processing 635/704 atomic regions from SNP 190340 to 190940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,552 DEBUG Processing 457/661 atomic regions from SNP 136911 to 137511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,605 DEBUG Processing 193/596 atomic regions from SNP 57722 to 58322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,626 DEBUG Processing 200/561 atomic regions from SNP 59732 to 60332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,660 DEBUG Processing 524/676 atomic regions from SNP 157138 to 157738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,736 DEBUG Processing 636/704 atomic regions from SNP 190640 to 191240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,779 DEBUG Processing 458/661 atomic regions from SNP 137211 to 137811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,820 DEBUG Processing 201/561 atomic regions from SNP 60032 to 60632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,837 DEBUG Processing 194/596 atomic regions from SNP 58022 to 58622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,877 DEBUG Processing 525/676 atomic regions from SNP 157438 to 158038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,941 DEBUG Processing 637/704 atomic regions from SNP 190940 to 191540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,998 DEBUG Processing 459/661 atomic regions from SNP 137511 to 138111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,008 DEBUG Processing 202/561 atomic regions from SNP 60332 to 60932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,072 DEBUG Processing 195/596 atomic regions from SNP 58322 to 58922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,090 DEBUG Processing 526/676 atomic regions from SNP 157738 to 158338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,146 DEBUG Processing 638/704 atomic regions from SNP 191240 to 191840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,199 DEBUG Processing 203/561 atomic regions from SNP 60632 to 61232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,213 DEBUG Processing 460/661 atomic regions from SNP 137811 to 138411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,293 DEBUG Processing 196/596 atomic regions from SNP 58622 to 59222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,303 DEBUG Processing 527/676 atomic regions from SNP 158038 to 158638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,350 DEBUG Processing 639/704 atomic regions from SNP 191540 to 192140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,391 DEBUG Processing 204/561 atomic regions from SNP 60932 to 61532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,419 DEBUG Processing 461/661 atomic regions from SNP 138111 to 138711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,499 DEBUG Processing 197/596 atomic regions from SNP 58922 to 59522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,515 DEBUG Processing 528/676 atomic regions from SNP 158338 to 158938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,553 DEBUG Processing 640/704 atomic regions from SNP 191840 to 192440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,581 DEBUG Processing 205/561 atomic regions from SNP 61232 to 61832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,625 DEBUG Processing 462/661 atomic regions from SNP 138411 to 139011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,693 DEBUG Processing 198/596 atomic regions from SNP 59222 to 59822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,728 DEBUG Processing 529/676 atomic regions from SNP 158638 to 159238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,759 DEBUG Processing 641/704 atomic regions from SNP 192140 to 192740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,769 DEBUG Processing 206/561 atomic regions from SNP 61532 to 62132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,830 DEBUG Processing 463/661 atomic regions from SNP 138711 to 139311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,889 DEBUG Processing 199/596 atomic regions from SNP 59522 to 60122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,939 DEBUG Processing 530/676 atomic regions from SNP 158938 to 159538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,957 DEBUG Processing 207/561 atomic regions from SNP 61832 to 62432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,964 DEBUG Processing 642/704 atomic regions from SNP 192440 to 193040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,035 DEBUG Processing 464/661 atomic regions from SNP 139011 to 139611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,088 DEBUG Processing 200/596 atomic regions from SNP 59822 to 60422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,160 DEBUG Processing 531/676 atomic regions from SNP 159238 to 159838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,165 DEBUG Processing 208/561 atomic regions from SNP 62132 to 62732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,171 DEBUG Processing 643/704 atomic regions from SNP 192740 to 193340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,238 DEBUG Processing 465/661 atomic regions from SNP 139311 to 139911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,283 DEBUG Processing 201/596 atomic regions from SNP 60122 to 60722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,376 DEBUG Processing 209/561 atomic regions from SNP 62432 to 63032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,381 DEBUG Processing 644/704 atomic regions from SNP 193040 to 193640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,396 DEBUG Processing 532/676 atomic regions from SNP 159538 to 160138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,440 DEBUG Processing 466/661 atomic regions from SNP 139611 to 140211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,479 DEBUG Processing 202/596 atomic regions from SNP 60422 to 61022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,584 DEBUG Processing 645/704 atomic regions from SNP 193340 to 193940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,587 DEBUG Processing 210/561 atomic regions from SNP 62732 to 63332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,612 DEBUG Processing 533/676 atomic regions from SNP 159838 to 160438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,636 DEBUG Processing 467/661 atomic regions from SNP 139911 to 140511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,675 DEBUG Processing 203/596 atomic regions from SNP 60722 to 61322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,791 DEBUG Processing 646/704 atomic regions from SNP 193640 to 194240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,809 DEBUG Processing 211/561 atomic regions from SNP 63032 to 63632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,821 DEBUG Processing 534/676 atomic regions from SNP 160138 to 160738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,856 DEBUG Processing 468/661 atomic regions from SNP 140211 to 140811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,885 DEBUG Processing 204/596 atomic regions from SNP 61022 to 61622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,996 DEBUG Processing 647/704 atomic regions from SNP 193940 to 194540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,006 DEBUG Processing 212/561 atomic regions from SNP 63332 to 63932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,035 DEBUG Processing 535/676 atomic regions from SNP 160438 to 161038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,091 DEBUG Processing 469/661 atomic regions from SNP 140511 to 141111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,112 DEBUG Processing 205/596 atomic regions from SNP 61322 to 61922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,196 DEBUG Processing 648/704 atomic regions from SNP 194240 to 194840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,208 DEBUG Processing 213/561 atomic regions from SNP 63632 to 64232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,238 DEBUG Processing 536/676 atomic regions from SNP 160738 to 161338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,314 DEBUG Processing 470/661 atomic regions from SNP 140811 to 141411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,335 DEBUG Processing 206/596 atomic regions from SNP 61622 to 62222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,394 DEBUG Processing 649/704 atomic regions from SNP 194540 to 195140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,405 DEBUG Processing 214/561 atomic regions from SNP 63932 to 64532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,443 DEBUG Processing 537/676 atomic regions from SNP 161038 to 161638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,529 DEBUG Processing 471/661 atomic regions from SNP 141111 to 141711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,552 DEBUG Processing 207/596 atomic regions from SNP 61922 to 62522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,604 DEBUG Processing 215/561 atomic regions from SNP 64232 to 64832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,606 DEBUG Processing 650/704 atomic regions from SNP 194840 to 195440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,655 DEBUG Processing 538/676 atomic regions from SNP 161338 to 161938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,743 DEBUG Processing 472/661 atomic regions from SNP 141411 to 142011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,756 DEBUG Processing 208/596 atomic regions from SNP 62222 to 62822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,804 DEBUG Processing 216/561 atomic regions from SNP 64532 to 65132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,825 DEBUG Processing 651/704 atomic regions from SNP 195140 to 195740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,870 DEBUG Processing 539/676 atomic regions from SNP 161638 to 162238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,953 DEBUG Processing 209/596 atomic regions from SNP 62522 to 63122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,955 DEBUG Processing 473/661 atomic regions from SNP 141711 to 142311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,999 DEBUG Processing 217/561 atomic regions from SNP 64832 to 65432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,032 DEBUG Processing 652/704 atomic regions from SNP 195440 to 196040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,103 DEBUG Processing 540/676 atomic regions from SNP 161938 to 162538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,151 DEBUG Processing 210/596 atomic regions from SNP 62822 to 63422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,152 DEBUG Processing 474/661 atomic regions from SNP 142011 to 142611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,191 DEBUG Processing 218/561 atomic regions from SNP 65132 to 65732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,238 DEBUG Processing 653/704 atomic regions from SNP 195740 to 196340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,345 DEBUG Processing 541/676 atomic regions from SNP 162238 to 162838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,346 DEBUG Processing 211/596 atomic regions from SNP 63122 to 63722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,351 DEBUG Processing 475/661 atomic regions from SNP 142311 to 142911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,384 DEBUG Processing 219/561 atomic regions from SNP 65432 to 66032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,448 DEBUG Processing 654/704 atomic regions from SNP 196040 to 196640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,542 DEBUG Processing 212/596 atomic regions from SNP 63422 to 64022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,548 DEBUG Processing 476/661 atomic regions from SNP 142611 to 143211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,575 DEBUG Processing 220/561 atomic regions from SNP 65732 to 66332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,582 DEBUG Processing 542/676 atomic regions from SNP 162538 to 163138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,645 DEBUG Processing 655/704 atomic regions from SNP 196340 to 196940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,735 DEBUG Processing 213/596 atomic regions from SNP 63722 to 64322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,740 DEBUG Processing 477/661 atomic regions from SNP 142911 to 143511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,765 DEBUG Processing 221/561 atomic regions from SNP 66032 to 66632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,812 DEBUG Processing 543/676 atomic regions from SNP 162838 to 163438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,847 DEBUG Processing 656/704 atomic regions from SNP 196640 to 197240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,929 DEBUG Processing 214/596 atomic regions from SNP 64022 to 64622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,937 DEBUG Processing 478/661 atomic regions from SNP 143211 to 143811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,953 DEBUG Processing 222/561 atomic regions from SNP 66332 to 66932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,031 DEBUG Processing 544/676 atomic regions from SNP 163138 to 163738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,056 DEBUG Processing 657/704 atomic regions from SNP 196940 to 197540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,126 DEBUG Processing 215/596 atomic regions from SNP 64322 to 64922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,134 DEBUG Processing 479/661 atomic regions from SNP 143511 to 144111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,143 DEBUG Processing 223/561 atomic regions from SNP 66632 to 67232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,243 DEBUG Processing 545/676 atomic regions from SNP 163438 to 164038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,257 DEBUG Processing 658/704 atomic regions from SNP 197240 to 197840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,327 DEBUG Processing 216/596 atomic regions from SNP 64622 to 65222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,329 DEBUG Processing 480/661 atomic regions from SNP 143811 to 144411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,337 DEBUG Processing 224/561 atomic regions from SNP 66932 to 67532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,460 DEBUG Processing 546/676 atomic regions from SNP 163738 to 164338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,462 DEBUG Processing 659/704 atomic regions from SNP 197540 to 198140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,525 DEBUG Processing 217/596 atomic regions from SNP 64922 to 65522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,528 DEBUG Processing 481/661 atomic regions from SNP 144111 to 144711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,530 DEBUG Processing 225/561 atomic regions from SNP 67232 to 67832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,669 DEBUG Processing 660/704 atomic regions from SNP 197840 to 198440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,702 DEBUG Processing 547/676 atomic regions from SNP 164038 to 164638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,722 DEBUG Processing 218/596 atomic regions from SNP 65222 to 65822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,725 DEBUG Processing 226/561 atomic regions from SNP 67532 to 68132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,725 DEBUG Processing 482/661 atomic regions from SNP 144411 to 145011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,873 DEBUG Processing 661/704 atomic regions from SNP 198140 to 198740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,914 DEBUG Processing 227/561 atomic regions from SNP 67832 to 68432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,921 DEBUG Processing 219/596 atomic regions from SNP 65522 to 66122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,922 DEBUG Processing 483/661 atomic regions from SNP 144711 to 145311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,953 DEBUG Processing 548/676 atomic regions from SNP 164338 to 164938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,087 DEBUG Processing 662/704 atomic regions from SNP 198440 to 199040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,108 DEBUG Processing 228/561 atomic regions from SNP 68132 to 68732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,121 DEBUG Processing 220/596 atomic regions from SNP 65822 to 66422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,126 DEBUG Processing 484/661 atomic regions from SNP 145011 to 145611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,190 DEBUG Processing 549/676 atomic regions from SNP 164638 to 165238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,300 DEBUG Processing 229/561 atomic regions from SNP 68432 to 69032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,301 DEBUG Processing 663/704 atomic regions from SNP 198740 to 199340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,319 DEBUG Processing 221/596 atomic regions from SNP 66122 to 66722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,328 DEBUG Processing 485/661 atomic regions from SNP 145311 to 145911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,401 DEBUG Processing 550/676 atomic regions from SNP 164938 to 165538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,501 DEBUG Processing 230/561 atomic regions from SNP 68732 to 69332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,524 DEBUG Processing 222/596 atomic regions from SNP 66422 to 67022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,527 DEBUG Processing 664/704 atomic regions from SNP 199040 to 199640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,535 DEBUG Processing 486/661 atomic regions from SNP 145611 to 146211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,612 DEBUG Processing 551/676 atomic regions from SNP 165238 to 165838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,695 DEBUG Processing 231/561 atomic regions from SNP 69032 to 69632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,723 DEBUG Processing 223/596 atomic regions from SNP 66722 to 67322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,737 DEBUG Processing 487/661 atomic regions from SNP 145911 to 146511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,768 DEBUG Processing 665/704 atomic regions from SNP 199340 to 199940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,840 DEBUG Processing 552/676 atomic regions from SNP 165538 to 166138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,886 DEBUG Processing 232/561 atomic regions from SNP 69332 to 69932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,921 DEBUG Processing 224/596 atomic regions from SNP 67022 to 67622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,937 DEBUG Processing 488/661 atomic regions from SNP 146211 to 146811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,014 DEBUG Processing 666/704 atomic regions from SNP 199640 to 200240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,068 DEBUG Processing 553/676 atomic regions from SNP 165838 to 166438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,073 DEBUG Processing 233/561 atomic regions from SNP 69632 to 70232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,112 DEBUG Processing 225/596 atomic regions from SNP 67322 to 67922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,130 DEBUG Processing 489/661 atomic regions from SNP 146511 to 147111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,252 DEBUG Processing 667/704 atomic regions from SNP 199940 to 200540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,254 DEBUG Processing 234/561 atomic regions from SNP 69932 to 70532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,294 DEBUG Processing 554/676 atomic regions from SNP 166138 to 166738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,302 DEBUG Processing 226/596 atomic regions from SNP 67622 to 68222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,322 DEBUG Processing 490/661 atomic regions from SNP 146811 to 147411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,433 DEBUG Processing 235/561 atomic regions from SNP 70232 to 70832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,495 DEBUG Processing 668/704 atomic regions from SNP 200240 to 200840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,496 DEBUG Processing 227/596 atomic regions from SNP 67922 to 68522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,513 DEBUG Processing 491/661 atomic regions from SNP 147111 to 147711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,514 DEBUG Processing 555/676 atomic regions from SNP 166438 to 167038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,609 DEBUG Processing 236/561 atomic regions from SNP 70532 to 71132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,689 DEBUG Processing 228/596 atomic regions from SNP 68222 to 68822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,714 DEBUG Processing 492/661 atomic regions from SNP 147411 to 148011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,726 DEBUG Processing 556/676 atomic regions from SNP 166738 to 167338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,735 DEBUG Processing 669/704 atomic regions from SNP 200540 to 201140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,797 DEBUG Processing 237/561 atomic regions from SNP 70832 to 71432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,893 DEBUG Processing 229/596 atomic regions from SNP 68522 to 69122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,921 DEBUG Processing 493/661 atomic regions from SNP 147711 to 148311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,946 DEBUG Processing 557/676 atomic regions from SNP 167038 to 167638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,982 DEBUG Processing 670/704 atomic regions from SNP 200840 to 201440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,988 DEBUG Processing 238/561 atomic regions from SNP 71132 to 71732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,080 DEBUG Processing 230/596 atomic regions from SNP 68822 to 69422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,124 DEBUG Processing 494/661 atomic regions from SNP 148011 to 148611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,156 DEBUG Processing 558/676 atomic regions from SNP 167338 to 167938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,177 DEBUG Processing 239/561 atomic regions from SNP 71432 to 72032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,228 DEBUG Processing 671/704 atomic regions from SNP 201140 to 201740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,265 DEBUG Processing 231/596 atomic regions from SNP 69122 to 69722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,328 DEBUG Processing 495/661 atomic regions from SNP 148311 to 148911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,368 DEBUG Processing 240/561 atomic regions from SNP 71732 to 72332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,380 DEBUG Processing 559/676 atomic regions from SNP 167638 to 168238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,452 DEBUG Processing 232/596 atomic regions from SNP 69422 to 70022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,462 DEBUG Processing 672/704 atomic regions from SNP 201440 to 202040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,517 DEBUG Processing 496/661 atomic regions from SNP 148611 to 149211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,549 DEBUG Processing 241/561 atomic regions from SNP 72032 to 72632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,602 DEBUG Processing 560/676 atomic regions from SNP 167938 to 168538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,639 DEBUG Processing 233/596 atomic regions from SNP 69722 to 70322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,697 DEBUG Processing 673/704 atomic regions from SNP 201740 to 202340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,712 DEBUG Processing 497/661 atomic regions from SNP 148911 to 149511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,728 DEBUG Processing 242/561 atomic regions from SNP 72332 to 72932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,810 DEBUG Processing 561/676 atomic regions from SNP 168238 to 168838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,828 DEBUG Processing 234/596 atomic regions from SNP 70022 to 70622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,908 DEBUG Processing 243/561 atomic regions from SNP 72632 to 73232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,909 DEBUG Processing 498/661 atomic regions from SNP 149211 to 149811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,926 DEBUG Processing 674/704 atomic regions from SNP 202040 to 202640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,017 DEBUG Processing 235/596 atomic regions from SNP 70322 to 70922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,023 DEBUG Processing 562/676 atomic regions from SNP 168538 to 169138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,090 DEBUG Processing 244/561 atomic regions from SNP 72932 to 73532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,110 DEBUG Processing 499/661 atomic regions from SNP 149511 to 150111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,150 DEBUG Processing 675/704 atomic regions from SNP 202340 to 202940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,205 DEBUG Processing 236/596 atomic regions from SNP 70622 to 71222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,257 DEBUG Processing 563/676 atomic regions from SNP 168838 to 169438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,268 DEBUG Processing 245/561 atomic regions from SNP 73232 to 73832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,308 DEBUG Processing 500/661 atomic regions from SNP 149811 to 150411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,373 DEBUG Processing 676/704 atomic regions from SNP 202640 to 203240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,389 DEBUG Processing 237/596 atomic regions from SNP 70922 to 71522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,451 DEBUG Processing 246/561 atomic regions from SNP 73532 to 74132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,486 DEBUG Processing 564/676 atomic regions from SNP 169138 to 169738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,504 DEBUG Processing 501/661 atomic regions from SNP 150111 to 150711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,576 DEBUG Processing 238/596 atomic regions from SNP 71222 to 71822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,594 DEBUG Processing 677/704 atomic regions from SNP 202940 to 203540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,632 DEBUG Processing 247/561 atomic regions from SNP 73832 to 74432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,694 DEBUG Processing 565/676 atomic regions from SNP 169438 to 170038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,698 DEBUG Processing 502/661 atomic regions from SNP 150411 to 151011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,762 DEBUG Processing 239/596 atomic regions from SNP 71522 to 72122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,812 DEBUG Processing 248/561 atomic regions from SNP 74132 to 74732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,817 DEBUG Processing 678/704 atomic regions from SNP 203240 to 203840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,893 DEBUG Processing 503/661 atomic regions from SNP 150711 to 151311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,901 DEBUG Processing 566/676 atomic regions from SNP 169738 to 170338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,908 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:54:39,951 DEBUG Processing 240/596 atomic regions from SNP 71822 to 72422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,992 DEBUG Processing 249/561 atomic regions from SNP 74432 to 75032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,029 DEBUG Processing 679/704 atomic regions from SNP 203540 to 204140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,087 DEBUG Processing 504/661 atomic regions from SNP 151011 to 151611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,113 DEBUG Processing 567/676 atomic regions from SNP 170038 to 170638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,149 DEBUG Processing 241/596 atomic regions from SNP 72122 to 72722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,177 DEBUG Processing 250/561 atomic regions from SNP 74732 to 75332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,268 DEBUG Processing 680/704 atomic regions from SNP 203840 to 204440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,285 DEBUG Processing 505/661 atomic regions from SNP 151311 to 151911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,323 DEBUG Processing 568/676 atomic regions from SNP 170338 to 170938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,345 DEBUG Processing 242/596 atomic regions from SNP 72422 to 73022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,365 DEBUG Processing 251/561 atomic regions from SNP 75032 to 75632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,487 DEBUG Processing 506/661 atomic regions from SNP 151611 to 152211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,504 DEBUG Processing 681/704 atomic regions from SNP 204140 to 204740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,540 DEBUG Processing 243/596 atomic regions from SNP 72722 to 73322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,552 DEBUG Processing 569/676 atomic regions from SNP 170638 to 171238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,552 DEBUG Processing 252/561 atomic regions from SNP 75332 to 75932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,683 DEBUG Processing 507/661 atomic regions from SNP 151911 to 152511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,726 DEBUG Processing 682/704 atomic regions from SNP 204440 to 205040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,733 DEBUG Processing 244/596 atomic regions from SNP 73022 to 73622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,741 DEBUG Processing 253/561 atomic regions from SNP 75632 to 76232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,784 DEBUG Processing 570/676 atomic regions from SNP 170938 to 171538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,880 DEBUG Processing 508/661 atomic regions from SNP 152211 to 152811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,924 DEBUG Processing 245/596 atomic regions from SNP 73322 to 73922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,928 DEBUG Processing 254/561 atomic regions from SNP 75932 to 76532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,938 DEBUG Processing 683/704 atomic regions from SNP 204740 to 205340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,992 DEBUG Processing 571/676 atomic regions from SNP 171238 to 171838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,075 DEBUG Processing 509/661 atomic regions from SNP 152511 to 153111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,117 DEBUG Processing 255/561 atomic regions from SNP 76232 to 76832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,120 DEBUG Processing 246/596 atomic regions from SNP 73622 to 74222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,180 DEBUG Processing 684/704 atomic regions from SNP 205040 to 205640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,247 DEBUG Processing 572/676 atomic regions from SNP 171538 to 172138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,355 DEBUG Processing 510/661 atomic regions from SNP 152811 to 153411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,367 DEBUG Processing 256/561 atomic regions from SNP 76532 to 77132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,374 DEBUG Processing 247/596 atomic regions from SNP 73922 to 74522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,420 DEBUG Processing 685/704 atomic regions from SNP 205340 to 205940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,458 DEBUG Processing 573/676 atomic regions from SNP 171838 to 172438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,559 DEBUG Processing 257/561 atomic regions from SNP 76832 to 77432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,569 DEBUG Processing 511/661 atomic regions from SNP 153111 to 153711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,574 DEBUG Processing 248/596 atomic regions from SNP 74222 to 74822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,652 DEBUG Processing 686/704 atomic regions from SNP 205640 to 206240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,685 DEBUG Processing 574/676 atomic regions from SNP 172138 to 172738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,746 DEBUG Processing 258/561 atomic regions from SNP 77132 to 77732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,765 DEBUG Processing 512/661 atomic regions from SNP 153411 to 154011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,766 DEBUG Processing 249/596 atomic regions from SNP 74522 to 75122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,862 DEBUG Processing 687/704 atomic regions from SNP 205940 to 206540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,899 DEBUG Processing 575/676 atomic regions from SNP 172438 to 173038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,930 DEBUG Processing 259/561 atomic regions from SNP 77432 to 78032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,955 DEBUG Processing 250/596 atomic regions from SNP 74822 to 75422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,959 DEBUG Processing 513/661 atomic regions from SNP 153711 to 154311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,066 DEBUG Processing 688/704 atomic regions from SNP 206240 to 206840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,111 DEBUG Processing 576/676 atomic regions from SNP 172738 to 173338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,118 DEBUG Processing 260/561 atomic regions from SNP 77732 to 78332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,150 DEBUG Processing 251/596 atomic regions from SNP 75122 to 75722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,152 DEBUG Processing 514/661 atomic regions from SNP 154011 to 154611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,273 DEBUG Processing 689/704 atomic regions from SNP 206540 to 207140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,308 DEBUG Processing 261/561 atomic regions from SNP 78032 to 78632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,323 DEBUG Processing 577/676 atomic regions from SNP 173038 to 173638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,345 DEBUG Processing 252/596 atomic regions from SNP 75422 to 76022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,348 DEBUG Processing 515/661 atomic regions from SNP 154311 to 154911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,489 DEBUG Processing 690/704 atomic regions from SNP 206840 to 207440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,498 DEBUG Processing 262/561 atomic regions from SNP 78332 to 78932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,535 DEBUG Processing 578/676 atomic regions from SNP 173338 to 173938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,536 DEBUG Processing 253/596 atomic regions from SNP 75722 to 76322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,542 DEBUG Processing 516/661 atomic regions from SNP 154611 to 155211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,687 DEBUG Processing 263/561 atomic regions from SNP 78632 to 79232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,697 DEBUG Processing 691/704 atomic regions from SNP 207140 to 207740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,736 DEBUG Processing 254/596 atomic regions from SNP 76022 to 76622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,738 DEBUG Processing 517/661 atomic regions from SNP 154911 to 155511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,752 DEBUG Processing 579/676 atomic regions from SNP 173638 to 174238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,883 DEBUG Processing 264/561 atomic regions from SNP 78932 to 79532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,907 DEBUG Processing 692/704 atomic regions from SNP 207440 to 208040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,938 DEBUG Processing 518/661 atomic regions from SNP 155211 to 155811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,941 DEBUG Processing 255/596 atomic regions from SNP 76322 to 76922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,972 DEBUG Processing 580/676 atomic regions from SNP 173938 to 174538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,072 DEBUG Processing 265/561 atomic regions from SNP 79232 to 79832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,124 DEBUG Processing 693/704 atomic regions from SNP 207740 to 208340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,131 DEBUG Processing 256/596 atomic regions from SNP 76622 to 77222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,140 DEBUG Processing 519/661 atomic regions from SNP 155511 to 156111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,180 DEBUG Processing 581/676 atomic regions from SNP 174238 to 174838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,260 DEBUG Processing 266/561 atomic regions from SNP 79532 to 80132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,329 DEBUG Processing 257/596 atomic regions from SNP 76922 to 77522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,344 DEBUG Processing 520/661 atomic regions from SNP 155811 to 156411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,358 DEBUG Processing 694/704 atomic regions from SNP 208040 to 208640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,400 DEBUG Processing 582/676 atomic regions from SNP 174538 to 175138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,449 DEBUG Processing 267/561 atomic regions from SNP 79832 to 80432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,526 DEBUG Processing 258/596 atomic regions from SNP 77222 to 77822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,549 DEBUG Processing 521/661 atomic regions from SNP 156111 to 156711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,592 DEBUG Processing 695/704 atomic regions from SNP 208340 to 208940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,631 DEBUG Processing 583/676 atomic regions from SNP 174838 to 175438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,637 DEBUG Processing 268/561 atomic regions from SNP 80132 to 80732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,729 DEBUG Processing 259/596 atomic regions from SNP 77522 to 78122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,753 DEBUG Processing 522/661 atomic regions from SNP 156411 to 157011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,829 DEBUG Processing 269/561 atomic regions from SNP 80432 to 81032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,835 DEBUG Processing 696/704 atomic regions from SNP 208640 to 209240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,855 DEBUG Processing 584/676 atomic regions from SNP 175138 to 175738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,937 DEBUG Processing 260/596 atomic regions from SNP 77822 to 78422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,951 DEBUG Processing 523/661 atomic regions from SNP 156711 to 157311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,020 DEBUG Processing 270/561 atomic regions from SNP 80732 to 81332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,073 DEBUG Processing 585/676 atomic regions from SNP 175438 to 176038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,074 DEBUG Processing 697/704 atomic regions from SNP 208940 to 209540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,142 DEBUG Processing 261/596 atomic regions from SNP 78122 to 78722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,145 DEBUG Processing 524/661 atomic regions from SNP 157011 to 157611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,210 DEBUG Processing 271/561 atomic regions from SNP 81032 to 81632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,283 DEBUG Processing 586/676 atomic regions from SNP 175738 to 176338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,311 DEBUG Processing 698/704 atomic regions from SNP 209240 to 209840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,340 DEBUG Processing 525/661 atomic regions from SNP 157311 to 157911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,342 DEBUG Processing 262/596 atomic regions from SNP 78422 to 79022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,399 DEBUG Processing 272/561 atomic regions from SNP 81332 to 81932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,492 DEBUG Processing 587/676 atomic regions from SNP 176038 to 176638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,535 DEBUG Processing 526/661 atomic regions from SNP 157611 to 158211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,542 DEBUG Processing 263/596 atomic regions from SNP 78722 to 79322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,545 DEBUG Processing 699/704 atomic regions from SNP 209540 to 210140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,590 DEBUG Processing 273/561 atomic regions from SNP 81632 to 82232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,706 DEBUG Processing 588/676 atomic regions from SNP 176338 to 176938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,729 DEBUG Processing 527/661 atomic regions from SNP 157911 to 158511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,740 DEBUG Processing 264/596 atomic regions from SNP 79022 to 79622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,774 DEBUG Processing 700/704 atomic regions from SNP 209840 to 210440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,782 DEBUG Processing 274/561 atomic regions from SNP 81932 to 82532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,910 DEBUG Processing 589/676 atomic regions from SNP 176638 to 177238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,919 DEBUG Processing 528/661 atomic regions from SNP 158211 to 158811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,929 DEBUG Processing 265/596 atomic regions from SNP 79322 to 79922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,963 DEBUG Processing 275/561 atomic regions from SNP 82232 to 82832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,987 DEBUG Processing 701/704 atomic regions from SNP 210140 to 210740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,106 DEBUG Processing 529/661 atomic regions from SNP 158511 to 159111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,115 DEBUG Processing 590/676 atomic regions from SNP 176938 to 177538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,117 DEBUG Processing 266/596 atomic regions from SNP 79622 to 80222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,143 DEBUG Processing 276/561 atomic regions from SNP 82532 to 83132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,206 DEBUG Processing 702/704 atomic regions from SNP 210440 to 211040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,295 DEBUG Processing 530/661 atomic regions from SNP 158811 to 159411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,310 DEBUG Processing 267/596 atomic regions from SNP 79922 to 80522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,326 DEBUG Processing 591/676 atomic regions from SNP 177238 to 177838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,328 DEBUG Processing 277/561 atomic regions from SNP 82832 to 83432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,412 DEBUG Processing 703/704 atomic regions from SNP 210740 to 211340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,489 DEBUG Processing 531/661 atomic regions from SNP 159111 to 159711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,507 DEBUG Processing 268/596 atomic regions from SNP 80222 to 80822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,517 DEBUG Processing 278/561 atomic regions from SNP 83132 to 83732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,542 DEBUG Processing 592/676 atomic regions from SNP 177538 to 178138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,619 DEBUG Processing 704/704 atomic regions from SNP 211040 to 211640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,685 DEBUG Processing 532/661 atomic regions from SNP 159411 to 160011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,709 DEBUG Processing 269/596 atomic regions from SNP 80522 to 81122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,710 DEBUG Processing 279/561 atomic regions from SNP 83432 to 84032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,740 DEBUG Unique SNPs positions in subchromosome 1: 211641 2025-01-31 09:54:45,761 DEBUG Processing 593/676 atomic regions from SNP 177838 to 178438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,887 DEBUG Processing 533/661 atomic regions from SNP 159711 to 160311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,908 DEBUG Processing 270/596 atomic regions from SNP 80822 to 81422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,927 DEBUG Processing 280/561 atomic regions from SNP 83732 to 84332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,981 DEBUG Processing 594/676 atomic regions from SNP 178138 to 178738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,085 DEBUG Processing 534/661 atomic regions from SNP 160011 to 160611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,102 DEBUG Processing 271/596 atomic regions from SNP 81122 to 81722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,116 DEBUG Processing 281/561 atomic regions from SNP 84032 to 84632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,193 DEBUG Processing 595/676 atomic regions from SNP 178438 to 179038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,288 DEBUG Processing 272/596 atomic regions from SNP 81422 to 82022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,290 DEBUG Processing 535/661 atomic regions from SNP 160311 to 160911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,295 DEBUG Processing 282/561 atomic regions from SNP 84332 to 84932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,396 DEBUG Processing 596/676 atomic regions from SNP 178738 to 179338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,475 DEBUG Processing 273/596 atomic regions from SNP 81722 to 82322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,475 DEBUG Processing 283/561 atomic regions from SNP 84632 to 85232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,486 DEBUG Processing 536/661 atomic regions from SNP 160611 to 161211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,618 DEBUG Processing 597/676 atomic regions from SNP 179038 to 179638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,661 DEBUG Processing 284/561 atomic regions from SNP 84932 to 85532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,666 DEBUG Processing 274/596 atomic regions from SNP 82022 to 82622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,679 DEBUG Processing 537/661 atomic regions from SNP 160911 to 161511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,823 DEBUG Processing 598/676 atomic regions from SNP 179338 to 179938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,843 DEBUG Processing 285/561 atomic regions from SNP 85232 to 85832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,855 DEBUG Processing 275/596 atomic regions from SNP 82322 to 82922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,874 DEBUG Processing 538/661 atomic regions from SNP 161211 to 161811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,027 DEBUG Processing 286/561 atomic regions from SNP 85532 to 86132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,033 DEBUG Processing 599/676 atomic regions from SNP 179638 to 180238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,044 DEBUG Processing 276/596 atomic regions from SNP 82622 to 83222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,095 DEBUG Processing 539/661 atomic regions from SNP 161511 to 162111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,213 DEBUG Processing 287/561 atomic regions from SNP 85832 to 86432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,238 DEBUG Processing 277/596 atomic regions from SNP 82922 to 83522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,257 DEBUG Processing 600/676 atomic regions from SNP 179938 to 180538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,309 DEBUG Processing 540/661 atomic regions from SNP 161811 to 162411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,399 DEBUG Processing 288/561 atomic regions from SNP 86132 to 86732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,431 DEBUG Processing 278/596 atomic regions from SNP 83222 to 83822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,501 DEBUG Processing 601/676 atomic regions from SNP 180238 to 180838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,508 DEBUG Processing 541/661 atomic regions from SNP 162111 to 162711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,591 DEBUG Processing 289/561 atomic regions from SNP 86432 to 87032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,624 DEBUG Processing 279/596 atomic regions from SNP 83522 to 84122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,700 DEBUG Processing 542/661 atomic regions from SNP 162411 to 163011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,703 DEBUG Processing 602/676 atomic regions from SNP 180538 to 181138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,772 DEBUG Processing 290/561 atomic regions from SNP 86732 to 87332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,811 DEBUG Processing 280/596 atomic regions from SNP 83822 to 84422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,903 DEBUG Processing 543/661 atomic regions from SNP 162711 to 163311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,909 DEBUG Processing 603/676 atomic regions from SNP 180838 to 181438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,954 DEBUG Processing 291/561 atomic regions from SNP 87032 to 87632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,002 DEBUG Processing 281/596 atomic regions from SNP 84122 to 84722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,133 DEBUG Processing 544/661 atomic regions from SNP 163011 to 163611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,133 DEBUG Processing 604/676 atomic regions from SNP 181138 to 181738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,157 DEBUG Processing 292/561 atomic regions from SNP 87332 to 87932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,207 DEBUG Processing 282/596 atomic regions from SNP 84422 to 85022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,362 DEBUG Processing 293/561 atomic regions from SNP 87632 to 88232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,364 DEBUG Processing 605/676 atomic regions from SNP 181438 to 182038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,381 DEBUG Processing 545/661 atomic regions from SNP 163311 to 163911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,416 DEBUG Processing 283/596 atomic regions from SNP 84722 to 85322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,571 DEBUG Processing 294/561 atomic regions from SNP 87932 to 88532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,599 DEBUG Processing 606/676 atomic regions from SNP 181738 to 182338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,607 DEBUG Processing 546/661 atomic regions from SNP 163611 to 164211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,627 DEBUG Processing 284/596 atomic regions from SNP 85022 to 85622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,774 DEBUG Processing 295/561 atomic regions from SNP 88232 to 88832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,837 DEBUG Processing 607/676 atomic regions from SNP 182038 to 182638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,840 DEBUG Processing 285/596 atomic regions from SNP 85322 to 85922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,840 DEBUG Processing 547/661 atomic regions from SNP 163911 to 164511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,971 DEBUG Processing 296/561 atomic regions from SNP 88532 to 89132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,057 DEBUG Processing 286/596 atomic regions from SNP 85622 to 86222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,084 DEBUG Processing 608/676 atomic regions from SNP 182338 to 182938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,093 DEBUG Processing 548/661 atomic regions from SNP 164211 to 164811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,176 DEBUG Processing 297/561 atomic regions from SNP 88832 to 89432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,269 DEBUG Processing 287/596 atomic regions from SNP 85922 to 86522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,318 DEBUG Processing 609/676 atomic regions from SNP 182638 to 183238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,335 DEBUG Processing 549/661 atomic regions from SNP 164511 to 165111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,374 DEBUG Processing 298/561 atomic regions from SNP 89132 to 89732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,470 DEBUG Processing 288/596 atomic regions from SNP 86222 to 86822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,542 DEBUG Processing 610/676 atomic regions from SNP 182938 to 183538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,565 DEBUG Processing 550/661 atomic regions from SNP 164811 to 165411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,572 DEBUG Processing 299/561 atomic regions from SNP 89432 to 90032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,659 DEBUG Processing 289/596 atomic regions from SNP 86522 to 87122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,759 DEBUG Processing 611/676 atomic regions from SNP 183238 to 183838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,769 DEBUG Processing 300/561 atomic regions from SNP 89732 to 90332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,772 DEBUG Processing 551/661 atomic regions from SNP 165111 to 165711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,849 DEBUG Processing 290/596 atomic regions from SNP 86822 to 87422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,965 DEBUG Processing 301/561 atomic regions from SNP 90032 to 90632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,975 DEBUG Processing 552/661 atomic regions from SNP 165411 to 166011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,976 DEBUG Processing 612/676 atomic regions from SNP 183538 to 184138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,044 DEBUG Processing 291/596 atomic regions from SNP 87122 to 87722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,153 DEBUG Processing 302/561 atomic regions from SNP 90332 to 90932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,171 DEBUG Processing 553/661 atomic regions from SNP 165711 to 166311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,190 DEBUG Processing 613/676 atomic regions from SNP 183838 to 184438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,238 DEBUG Processing 292/596 atomic regions from SNP 87422 to 88022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,336 DEBUG Processing 303/561 atomic regions from SNP 90632 to 91232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,365 DEBUG Processing 554/661 atomic regions from SNP 166011 to 166611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,404 DEBUG Processing 614/676 atomic regions from SNP 184138 to 184738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,434 DEBUG Processing 293/596 atomic regions from SNP 87722 to 88322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,518 DEBUG Processing 304/561 atomic regions from SNP 90932 to 91532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,568 DEBUG Processing 555/661 atomic regions from SNP 166311 to 166911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,615 DEBUG Processing 615/676 atomic regions from SNP 184438 to 185038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,628 DEBUG Processing 294/596 atomic regions from SNP 88022 to 88622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,699 DEBUG Processing 305/561 atomic regions from SNP 91232 to 91832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,774 DEBUG Processing 556/661 atomic regions from SNP 166611 to 167211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,823 DEBUG Processing 295/596 atomic regions from SNP 88322 to 88922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,825 DEBUG Processing 616/676 atomic regions from SNP 184738 to 185338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,888 DEBUG Processing 306/561 atomic regions from SNP 91532 to 92132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,979 DEBUG Processing 557/661 atomic regions from SNP 166911 to 167511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,027 DEBUG Processing 296/596 atomic regions from SNP 88622 to 89222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,060 DEBUG Processing 617/676 atomic regions from SNP 185038 to 185638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,094 DEBUG Processing 307/561 atomic regions from SNP 91832 to 92432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,203 DEBUG Processing 558/661 atomic regions from SNP 167211 to 167811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,238 DEBUG Processing 297/596 atomic regions from SNP 88922 to 89522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,301 DEBUG Processing 308/561 atomic regions from SNP 92132 to 92732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,320 DEBUG Processing 618/676 atomic regions from SNP 185338 to 185938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,424 DEBUG Processing 559/661 atomic regions from SNP 167511 to 168111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,444 DEBUG Processing 298/596 atomic regions from SNP 89222 to 89822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,500 DEBUG Processing 309/561 atomic regions from SNP 92432 to 93032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,550 DEBUG Processing 619/676 atomic regions from SNP 185638 to 186238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,646 DEBUG Processing 299/596 atomic regions from SNP 89522 to 90122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,653 DEBUG Processing 560/661 atomic regions from SNP 167811 to 168411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,701 DEBUG Processing 310/561 atomic regions from SNP 92732 to 93332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,776 DEBUG Processing 620/676 atomic regions from SNP 185938 to 186538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,856 DEBUG Processing 300/596 atomic regions from SNP 89822 to 90422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,865 DEBUG Processing 561/661 atomic regions from SNP 168111 to 168711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,900 DEBUG Processing 311/561 atomic regions from SNP 93032 to 93632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,965 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:54:51,967 DEBUG chr17: Signal quantile: 0.987. signal threshold: 11. Best RMSEA: 0.013 2025-01-31 09:54:52,002 DEBUG Processing 621/676 atomic regions from SNP 186238 to 186838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,069 DEBUG Processing 301/596 atomic regions from SNP 90122 to 90722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,079 DEBUG Processing 562/661 atomic regions from SNP 168411 to 169011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,107 DEBUG Processing 312/561 atomic regions from SNP 93332 to 93932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,231 DEBUG Processing 622/676 atomic regions from SNP 186538 to 187138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,290 DEBUG Processing 302/596 atomic regions from SNP 90422 to 91022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,295 DEBUG Processing 563/661 atomic regions from SNP 168711 to 169311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,310 DEBUG Processing 313/561 atomic regions from SNP 93632 to 94232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,449 DEBUG Processing 623/676 atomic regions from SNP 186838 to 187438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,502 DEBUG Processing 303/596 atomic regions from SNP 90722 to 91322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,518 DEBUG Processing 564/661 atomic regions from SNP 169011 to 169611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,526 DEBUG Processing 314/561 atomic regions from SNP 93932 to 94532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,667 DEBUG Processing 624/676 atomic regions from SNP 187138 to 187738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,716 DEBUG Processing 304/596 atomic regions from SNP 91022 to 91622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,720 DEBUG Processing 565/661 atomic regions from SNP 169311 to 169911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,765 DEBUG Processing 315/561 atomic regions from SNP 94232 to 94832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,893 DEBUG Processing 625/676 atomic regions from SNP 187438 to 188038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,932 DEBUG Processing 566/661 atomic regions from SNP 169611 to 170211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,936 DEBUG Processing 305/596 atomic regions from SNP 91322 to 91922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,997 DEBUG Processing 316/561 atomic regions from SNP 94532 to 95132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,115 DEBUG Processing 626/676 atomic regions from SNP 187738 to 188338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,139 DEBUG Processing 567/661 atomic regions from SNP 169911 to 170511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,149 DEBUG Processing 306/596 atomic regions from SNP 91622 to 92222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,205 DEBUG Processing 317/561 atomic regions from SNP 94832 to 95432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,344 DEBUG Processing 627/676 atomic regions from SNP 188038 to 188638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,350 DEBUG Processing 568/661 atomic regions from SNP 170211 to 170811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,363 DEBUG Processing 307/596 atomic regions from SNP 91922 to 92522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,408 DEBUG Processing 318/561 atomic regions from SNP 95132 to 95732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,551 DEBUG Processing 569/661 atomic regions from SNP 170511 to 171111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,573 DEBUG Processing 308/596 atomic regions from SNP 92222 to 92822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,578 DEBUG Processing 628/676 atomic regions from SNP 188338 to 188938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,610 DEBUG Processing 319/561 atomic regions from SNP 95432 to 96032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,757 DEBUG Processing 570/661 atomic regions from SNP 170811 to 171411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,785 DEBUG Processing 309/596 atomic regions from SNP 92522 to 93122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,815 DEBUG Processing 320/561 atomic regions from SNP 95732 to 96332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,825 DEBUG chr17 total SNP count: 159814 2025-01-31 09:54:53,825 DEBUG chr17 length: 94987271 2025-01-31 09:54:53,825 DEBUG ----------------------------------------- 2025-01-31 09:54:53,826 INFO Processing SNPs in chr17 2025-01-31 09:54:53,838 DEBUG Processing 629/676 atomic regions from SNP 188638 to 189238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,960 DEBUG Processing 571/661 atomic regions from SNP 171111 to 171711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,983 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 159814)] 2025-01-31 09:54:53,989 DEBUG Processing 310/596 atomic regions from SNP 92822 to 93422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,006 DEBUG Processing 321/561 atomic regions from SNP 96032 to 96632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,090 DEBUG Processing 630/676 atomic regions from SNP 188938 to 189538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,091 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:54,180 DEBUG Processing 572/661 atomic regions from SNP 171411 to 172011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,192 DEBUG Processing 311/596 atomic regions from SNP 93122 to 93722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,205 DEBUG Processing 322/561 atomic regions from SNP 96332 to 96932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,330 DEBUG Processing 631/676 atomic regions from SNP 189238 to 189838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,396 DEBUG Processing 312/596 atomic regions from SNP 93422 to 94022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,404 DEBUG Processing 323/561 atomic regions from SNP 96632 to 97232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,414 DEBUG Processing 573/661 atomic regions from SNP 171711 to 172311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,557 DEBUG Processing 632/676 atomic regions from SNP 189538 to 190138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,605 DEBUG Processing 313/596 atomic regions from SNP 93722 to 94322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,606 DEBUG Processing 324/561 atomic regions from SNP 96932 to 97532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,645 DEBUG Processing 574/661 atomic regions from SNP 172011 to 172611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,774 DEBUG Processing 633/676 atomic regions from SNP 189838 to 190438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,798 DEBUG Processing 325/561 atomic regions from SNP 97232 to 97832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,802 DEBUG Processing 314/596 atomic regions from SNP 94022 to 94622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,846 DEBUG Processing 575/661 atomic regions from SNP 172311 to 172911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,992 DEBUG Processing 326/561 atomic regions from SNP 97532 to 98132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,994 DEBUG Processing 634/676 atomic regions from SNP 190138 to 190738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,004 DEBUG Processing 315/596 atomic regions from SNP 94322 to 94922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,046 DEBUG Processing 576/661 atomic regions from SNP 172611 to 173211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,182 DEBUG Processing 327/561 atomic regions from SNP 97832 to 98432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,202 DEBUG Processing 316/596 atomic regions from SNP 94622 to 95222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,224 DEBUG Processing 635/676 atomic regions from SNP 190438 to 191038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,262 DEBUG Processing 577/661 atomic regions from SNP 172911 to 173511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,376 DEBUG Processing 328/561 atomic regions from SNP 98132 to 98732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,401 DEBUG Processing 317/596 atomic regions from SNP 94922 to 95522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,469 DEBUG Processing 636/676 atomic regions from SNP 190738 to 191338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,479 DEBUG Processing 578/661 atomic regions from SNP 173211 to 173811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,568 DEBUG Processing 329/561 atomic regions from SNP 98432 to 99032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,621 DEBUG Processing 318/596 atomic regions from SNP 95222 to 95822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,694 DEBUG Processing 637/676 atomic regions from SNP 191038 to 191638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,704 DEBUG Processing 579/661 atomic regions from SNP 173511 to 174111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,778 DEBUG Processing 330/561 atomic regions from SNP 98732 to 99332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,856 DEBUG Processing 319/596 atomic regions from SNP 95522 to 96122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,908 DEBUG Processing 638/676 atomic regions from SNP 191338 to 191938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,923 DEBUG Processing 580/661 atomic regions from SNP 173811 to 174411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,969 DEBUG Processing 331/561 atomic regions from SNP 99032 to 99632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,084 DEBUG Processing 320/596 atomic regions from SNP 95822 to 96422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,124 DEBUG Processing 581/661 atomic regions from SNP 174111 to 174711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,130 DEBUG Processing 639/676 atomic regions from SNP 191638 to 192238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,167 DEBUG Processing 332/561 atomic regions from SNP 99332 to 99932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,287 DEBUG Processing 321/596 atomic regions from SNP 96122 to 96722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,327 DEBUG Processing 582/661 atomic regions from SNP 174411 to 175011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,356 DEBUG Processing 640/676 atomic regions from SNP 191938 to 192538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,368 DEBUG Processing 333/561 atomic regions from SNP 99632 to 100232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,500 DEBUG Processing 322/596 atomic regions from SNP 96422 to 97022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,533 DEBUG Processing 583/661 atomic regions from SNP 174711 to 175311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,568 DEBUG Processing 334/561 atomic regions from SNP 99932 to 100532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,582 DEBUG Processing 641/676 atomic regions from SNP 192238 to 192838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,711 DEBUG Processing 323/596 atomic regions from SNP 96722 to 97322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,736 DEBUG Processing 584/661 atomic regions from SNP 175011 to 175611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,760 DEBUG Processing 335/561 atomic regions from SNP 100232 to 100832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,805 DEBUG Processing 642/676 atomic regions from SNP 192538 to 193138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,934 DEBUG Processing 324/596 atomic regions from SNP 97022 to 97622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,941 DEBUG Processing 585/661 atomic regions from SNP 175311 to 175911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,958 DEBUG Processing 336/561 atomic regions from SNP 100532 to 101132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,023 DEBUG Processing 643/676 atomic regions from SNP 192838 to 193438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,144 DEBUG Processing 586/661 atomic regions from SNP 175611 to 176211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,153 DEBUG Processing 337/561 atomic regions from SNP 100832 to 101432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,170 DEBUG Processing 325/596 atomic regions from SNP 97322 to 97922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,239 DEBUG Processing 644/676 atomic regions from SNP 193138 to 193738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,349 DEBUG Processing 587/661 atomic regions from SNP 175911 to 176511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,351 DEBUG Processing 338/561 atomic regions from SNP 101132 to 101732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,400 DEBUG Processing 326/596 atomic regions from SNP 97622 to 98222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,457 DEBUG Processing 645/676 atomic regions from SNP 193438 to 194038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,540 DEBUG Processing 339/561 atomic regions from SNP 101432 to 102032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,549 DEBUG Processing 588/661 atomic regions from SNP 176211 to 176811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,611 DEBUG Processing 327/596 atomic regions from SNP 97922 to 98522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,681 DEBUG Processing 646/676 atomic regions from SNP 193738 to 194338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,738 DEBUG Processing 340/561 atomic regions from SNP 101732 to 102332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,754 DEBUG Processing 589/661 atomic regions from SNP 176511 to 177111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,812 DEBUG Processing 328/596 atomic regions from SNP 98222 to 98822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,901 DEBUG Processing 647/676 atomic regions from SNP 194038 to 194638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,933 DEBUG Processing 341/561 atomic regions from SNP 102032 to 102632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,958 DEBUG Processing 590/661 atomic regions from SNP 176811 to 177411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,007 DEBUG Processing 329/596 atomic regions from SNP 98522 to 99122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,125 DEBUG Processing 648/676 atomic regions from SNP 194338 to 194938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,129 DEBUG Processing 342/561 atomic regions from SNP 102332 to 102932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,160 DEBUG Processing 591/661 atomic regions from SNP 177111 to 177711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,208 DEBUG Processing 330/596 atomic regions from SNP 98822 to 99422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,329 DEBUG Processing 343/561 atomic regions from SNP 102632 to 103232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,348 DEBUG Processing 649/676 atomic regions from SNP 194638 to 195238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,365 DEBUG Processing 592/661 atomic regions from SNP 177411 to 178011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,406 DEBUG Processing 331/596 atomic regions from SNP 99122 to 99722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,527 DEBUG Processing 344/561 atomic regions from SNP 102932 to 103532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,572 DEBUG Processing 650/676 atomic regions from SNP 194938 to 195538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,584 DEBUG Processing 593/661 atomic regions from SNP 177711 to 178311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,609 DEBUG Processing 332/596 atomic regions from SNP 99422 to 100022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,722 DEBUG Processing 345/561 atomic regions from SNP 103232 to 103832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,791 DEBUG Processing 594/661 atomic regions from SNP 178011 to 178611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,798 DEBUG Processing 651/676 atomic regions from SNP 195238 to 195838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,813 DEBUG Processing 333/596 atomic regions from SNP 99722 to 100322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,915 DEBUG Processing 346/561 atomic regions from SNP 103532 to 104132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,990 DEBUG Processing 595/661 atomic regions from SNP 178311 to 178911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,019 DEBUG Processing 334/596 atomic regions from SNP 100022 to 100622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,024 DEBUG Processing 652/676 atomic regions from SNP 195538 to 196138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,105 DEBUG Processing 347/561 atomic regions from SNP 103832 to 104432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,187 DEBUG Processing 596/661 atomic regions from SNP 178611 to 179211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,227 DEBUG Processing 335/596 atomic regions from SNP 100322 to 100922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,252 DEBUG Processing 653/676 atomic regions from SNP 195838 to 196438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,295 DEBUG Processing 348/561 atomic regions from SNP 104132 to 104732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,404 DEBUG Processing 597/661 atomic regions from SNP 178911 to 179511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,431 DEBUG Processing 336/596 atomic regions from SNP 100622 to 101222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,474 DEBUG Processing 654/676 atomic regions from SNP 196138 to 196738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,495 DEBUG Processing 349/561 atomic regions from SNP 104432 to 105032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,612 DEBUG Processing 598/661 atomic regions from SNP 179211 to 179811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,640 DEBUG Processing 337/596 atomic regions from SNP 100922 to 101522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,693 DEBUG Processing 350/561 atomic regions from SNP 104732 to 105332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,703 DEBUG Processing 655/676 atomic regions from SNP 196438 to 197038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,813 DEBUG Processing 599/661 atomic regions from SNP 179511 to 180111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,842 DEBUG Processing 338/596 atomic regions from SNP 101222 to 101822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,892 DEBUG Processing 351/561 atomic regions from SNP 105032 to 105632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,929 DEBUG Processing 656/676 atomic regions from SNP 196738 to 197338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,008 DEBUG Processing 600/661 atomic regions from SNP 179811 to 180411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,043 DEBUG Processing 339/596 atomic regions from SNP 101522 to 102122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,089 DEBUG Processing 352/561 atomic regions from SNP 105332 to 105932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,150 DEBUG Processing 657/676 atomic regions from SNP 197038 to 197638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,208 DEBUG Processing 601/661 atomic regions from SNP 180111 to 180711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,242 DEBUG Processing 340/596 atomic regions from SNP 101822 to 102422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,287 DEBUG Processing 353/561 atomic regions from SNP 105632 to 106232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,365 DEBUG Processing 658/676 atomic regions from SNP 197338 to 197938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,409 DEBUG Processing 602/661 atomic regions from SNP 180411 to 181011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,439 DEBUG Processing 341/596 atomic regions from SNP 102122 to 102722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,482 DEBUG Processing 354/561 atomic regions from SNP 105932 to 106532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,582 DEBUG Processing 659/676 atomic regions from SNP 197638 to 198238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,613 DEBUG Processing 603/661 atomic regions from SNP 180711 to 181311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,640 DEBUG Processing 342/596 atomic regions from SNP 102422 to 103022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,683 DEBUG Processing 355/561 atomic regions from SNP 106232 to 106832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,803 DEBUG Processing 660/676 atomic regions from SNP 197938 to 198538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,814 DEBUG Processing 604/661 atomic regions from SNP 181011 to 181611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,839 DEBUG Processing 343/596 atomic regions from SNP 102722 to 103322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,876 DEBUG Processing 356/561 atomic regions from SNP 106532 to 107132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,016 DEBUG Processing 605/661 atomic regions from SNP 181311 to 181911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,022 DEBUG Processing 661/676 atomic regions from SNP 198238 to 198838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,045 DEBUG Processing 344/596 atomic regions from SNP 103022 to 103622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,071 DEBUG Processing 357/561 atomic regions from SNP 106832 to 107432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,215 DEBUG Processing 606/661 atomic regions from SNP 181611 to 182211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,242 DEBUG Processing 662/676 atomic regions from SNP 198538 to 199138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,245 DEBUG Processing 345/596 atomic regions from SNP 103322 to 103922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,261 DEBUG Processing 358/561 atomic regions from SNP 107132 to 107732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,437 DEBUG Processing 607/661 atomic regions from SNP 181911 to 182511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,450 DEBUG Processing 346/596 atomic regions from SNP 103622 to 104222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,460 DEBUG Processing 359/561 atomic regions from SNP 107432 to 108032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,469 DEBUG Processing 663/676 atomic regions from SNP 198838 to 199438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,656 DEBUG Processing 347/596 atomic regions from SNP 103922 to 104522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,660 DEBUG Processing 360/561 atomic regions from SNP 107732 to 108332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,673 DEBUG Processing 608/661 atomic regions from SNP 182211 to 182811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,695 DEBUG Processing 664/676 atomic regions from SNP 199138 to 199738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,866 DEBUG Processing 361/561 atomic regions from SNP 108032 to 108632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,867 DEBUG Processing 348/596 atomic regions from SNP 104222 to 104822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,909 DEBUG Processing 609/661 atomic regions from SNP 182511 to 183111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,913 DEBUG Processing 665/676 atomic regions from SNP 199438 to 200038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,063 DEBUG Processing 362/561 atomic regions from SNP 108332 to 108932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,072 DEBUG Processing 349/596 atomic regions from SNP 104522 to 105122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,134 DEBUG Processing 666/676 atomic regions from SNP 199738 to 200338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,144 DEBUG Processing 610/661 atomic regions from SNP 182811 to 183411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,257 DEBUG Processing 363/561 atomic regions from SNP 108632 to 109232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,271 DEBUG Processing 350/596 atomic regions from SNP 104822 to 105422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,350 DEBUG Processing 667/676 atomic regions from SNP 200038 to 200638 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,375 DEBUG Processing 611/661 atomic regions from SNP 183111 to 183711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,446 DEBUG Processing 364/561 atomic regions from SNP 108932 to 109532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,470 DEBUG Processing 351/596 atomic regions from SNP 105122 to 105722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,563 DEBUG Processing 668/676 atomic regions from SNP 200338 to 200938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,581 DEBUG Processing 612/661 atomic regions from SNP 183411 to 184011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,646 DEBUG Processing 365/561 atomic regions from SNP 109232 to 109832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,677 DEBUG Processing 352/596 atomic regions from SNP 105422 to 106022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,769 DEBUG Processing 669/676 atomic regions from SNP 200638 to 201238 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,799 DEBUG Processing 613/661 atomic regions from SNP 183711 to 184311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,840 DEBUG Processing 366/561 atomic regions from SNP 109532 to 110132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,878 DEBUG Processing 353/596 atomic regions from SNP 105722 to 106322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,979 DEBUG Processing 670/676 atomic regions from SNP 200938 to 201538 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,030 DEBUG Processing 614/661 atomic regions from SNP 184011 to 184611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,032 DEBUG Processing 367/561 atomic regions from SNP 109832 to 110432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,084 DEBUG Processing 354/596 atomic regions from SNP 106022 to 106622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,193 DEBUG Processing 671/676 atomic regions from SNP 201238 to 201838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,217 DEBUG Processing 368/561 atomic regions from SNP 110132 to 110732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,258 DEBUG Processing 615/661 atomic regions from SNP 184311 to 184911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,280 DEBUG Processing 355/596 atomic regions from SNP 106322 to 106922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,412 DEBUG Processing 369/561 atomic regions from SNP 110432 to 111032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,414 DEBUG Processing 672/676 atomic regions from SNP 201538 to 202138 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,490 DEBUG Processing 356/596 atomic regions from SNP 106622 to 107222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,490 DEBUG Processing 616/661 atomic regions from SNP 184611 to 185211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,605 DEBUG Processing 370/561 atomic regions from SNP 110732 to 111332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,632 DEBUG Processing 673/676 atomic regions from SNP 201838 to 202438 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,698 DEBUG Processing 617/661 atomic regions from SNP 184911 to 185511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,702 DEBUG Processing 357/596 atomic regions from SNP 106922 to 107522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,800 DEBUG Processing 371/561 atomic regions from SNP 111032 to 111632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,805 DEBUG Subchromosome time: 194.79265484097414, subchromosome SNPs: 211641 2025-01-31 09:55:03,805 DEBUG Estimated BADs: [15.63, 3.13, 0.78, 0.31, 1.56, 0.31, 1.56, 0.39, 0.78, 9.38, 1.56, 0.52, 3.13, 1.56, 6.25, 1.56, 0.78, 15.63, 3.13, 1.56, 3.13, 0.52, 3.13, 6.25, 1.56, 4.69, 1.56, 0.39, 0.78, 4.69, 3.13] SNP counts: [148, 6454, 9731, 9940, 10239, 6923, 13797, 13588, 7614, 193, 12811, 2541, 9094, 11743, 3188, 4732, 2481, 129, 6371, 11332, 9280, 7965, 5044, 3815, 2548, 5252, 13825, 3246, 4966, 3044, 9607] SNP IDs counts: [148, 6454, 9731, 9940, 10239, 6923, 13797, 13588, 7614, 193, 12811, 2541, 9094, 11743, 3188, 4732, 2481, 129, 6371, 11332, 9280, 7965, 5044, 3815, 2548, 5252, 13825, 3246, 4966, 3044, 9607] Critical gap: 593526bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.71Mbp, 12.54Mbp, 18.70Mbp, 24.44Mbp, 28.63Mbp, 36.48Mbp, 44.40Mbp, 48.77Mbp, 48.88Mbp, 56.05Mbp, 57.52Mbp, 62.54Mbp, 68.97Mbp, 70.67Mbp, 73.31Mbp, 74.83Mbp, 74.90Mbp, 78.34Mbp, 84.56Mbp, 89.57Mbp, 94.13Mbp, 96.82Mbp, 98.85Mbp, 100.28Mbp, 103.07Mbp, 110.63Mbp, 112.45Mbp, 115.16Mbp, 116.80Mbp, 122.08Mbp] 2025-01-31 09:55:03,805 DEBUG chr11 time: 194.79322535695974 s 2025-01-31 09:55:03,852 DEBUG Processing 674/676 atomic regions from SNP 202138 to 202738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,900 DEBUG Processing 358/596 atomic regions from SNP 107222 to 107822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,913 DEBUG Processing 618/661 atomic regions from SNP 185211 to 185811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,931 DEBUG chr11: Fitting background model for 31 segments 2025-01-31 09:55:03,993 DEBUG Processing 372/561 atomic regions from SNP 111332 to 111932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,087 DEBUG Processing 675/676 atomic regions from SNP 202438 to 203038 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,105 DEBUG Processing 359/596 atomic regions from SNP 107522 to 108122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,116 DEBUG Processing 619/661 atomic regions from SNP 185511 to 186111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,182 DEBUG Processing 373/561 atomic regions from SNP 111632 to 112232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,307 DEBUG Processing 360/596 atomic regions from SNP 107822 to 108422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,325 DEBUG Processing 620/661 atomic regions from SNP 185811 to 186411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,327 DEBUG Processing 676/676 atomic regions from SNP 202738 to 203338 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,372 DEBUG Processing 374/561 atomic regions from SNP 111932 to 112532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,485 DEBUG Unique SNPs positions in subchromosome 1: 203339 2025-01-31 09:55:04,507 DEBUG Processing 361/596 atomic regions from SNP 108122 to 108722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,561 DEBUG Processing 621/661 atomic regions from SNP 186111 to 186711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,565 DEBUG Processing 375/561 atomic regions from SNP 112232 to 112832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,699 DEBUG Processing 362/596 atomic regions from SNP 108422 to 109022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,758 DEBUG Processing 376/561 atomic regions from SNP 112532 to 113132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,800 DEBUG Processing 622/661 atomic regions from SNP 186411 to 187011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,892 DEBUG Processing 363/596 atomic regions from SNP 108722 to 109322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,949 DEBUG Processing 377/561 atomic regions from SNP 112832 to 113432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,044 DEBUG Processing 623/661 atomic regions from SNP 186711 to 187311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,093 DEBUG Processing 364/596 atomic regions from SNP 109022 to 109622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,145 DEBUG Processing 378/561 atomic regions from SNP 113132 to 113732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,288 DEBUG Processing 365/596 atomic regions from SNP 109322 to 109922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,296 DEBUG Processing 624/661 atomic regions from SNP 187011 to 187611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,328 DEBUG Processing 379/561 atomic regions from SNP 113432 to 114032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,487 DEBUG Processing 366/596 atomic regions from SNP 109622 to 110222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,515 DEBUG Processing 380/561 atomic regions from SNP 113732 to 114332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,523 DEBUG Processing 625/661 atomic regions from SNP 187311 to 187911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,681 DEBUG Processing 367/596 atomic regions from SNP 109922 to 110522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,703 DEBUG Processing 381/561 atomic regions from SNP 114032 to 114632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,724 DEBUG Processing 626/661 atomic regions from SNP 187611 to 188211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,879 DEBUG Processing 368/596 atomic regions from SNP 110222 to 110822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,896 DEBUG Processing 382/561 atomic regions from SNP 114332 to 114932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,929 DEBUG Processing 627/661 atomic regions from SNP 187911 to 188511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,080 DEBUG Processing 369/596 atomic regions from SNP 110522 to 111122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,089 DEBUG Processing 383/561 atomic regions from SNP 114632 to 115232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,140 DEBUG Processing 628/661 atomic regions from SNP 188211 to 188811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,281 DEBUG Processing 370/596 atomic regions from SNP 110822 to 111422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,286 DEBUG Processing 384/561 atomic regions from SNP 114932 to 115532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,352 DEBUG Processing 629/661 atomic regions from SNP 188511 to 189111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,475 DEBUG Processing 385/561 atomic regions from SNP 115232 to 115832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,496 DEBUG Processing 371/596 atomic regions from SNP 111122 to 111722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,562 DEBUG Processing 630/661 atomic regions from SNP 188811 to 189411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,667 DEBUG Processing 386/561 atomic regions from SNP 115532 to 116132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,703 DEBUG Processing 372/596 atomic regions from SNP 111422 to 112022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,774 DEBUG Processing 631/661 atomic regions from SNP 189111 to 189711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,854 DEBUG Processing 387/561 atomic regions from SNP 115832 to 116432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,920 DEBUG Processing 373/596 atomic regions from SNP 111722 to 112322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,980 DEBUG Processing 632/661 atomic regions from SNP 189411 to 190011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,045 DEBUG Processing 388/561 atomic regions from SNP 116132 to 116732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,133 DEBUG Processing 374/596 atomic regions from SNP 112022 to 112622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,188 DEBUG Processing 633/661 atomic regions from SNP 189711 to 190311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,239 DEBUG Processing 389/561 atomic regions from SNP 116432 to 117032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,328 DEBUG Processing 375/596 atomic regions from SNP 112322 to 112922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,398 DEBUG Processing 634/661 atomic regions from SNP 190011 to 190611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,421 DEBUG Processing 390/561 atomic regions from SNP 116732 to 117332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,518 DEBUG Processing 376/596 atomic regions from SNP 112622 to 113222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,600 DEBUG Processing 635/661 atomic regions from SNP 190311 to 190911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,602 DEBUG Processing 391/561 atomic regions from SNP 117032 to 117632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,706 DEBUG Processing 377/596 atomic regions from SNP 112922 to 113522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,789 DEBUG Processing 392/561 atomic regions from SNP 117332 to 117932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,806 DEBUG Processing 636/661 atomic regions from SNP 190611 to 191211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,906 DEBUG Processing 378/596 atomic regions from SNP 113222 to 113822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,979 DEBUG Processing 393/561 atomic regions from SNP 117632 to 118232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,016 DEBUG Processing 637/661 atomic regions from SNP 190911 to 191511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,106 DEBUG Processing 379/596 atomic regions from SNP 113522 to 114122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,167 DEBUG Processing 394/561 atomic regions from SNP 117932 to 118532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,226 DEBUG Processing 638/661 atomic regions from SNP 191211 to 191811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,299 DEBUG Processing 380/596 atomic regions from SNP 113822 to 114422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,356 DEBUG Processing 395/561 atomic regions from SNP 118232 to 118832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,435 DEBUG Processing 639/661 atomic regions from SNP 191511 to 192111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,521 DEBUG Processing 381/596 atomic regions from SNP 114122 to 114722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,548 DEBUG Processing 396/561 atomic regions from SNP 118532 to 119132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,659 DEBUG Processing 640/661 atomic regions from SNP 191811 to 192411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,722 DEBUG Processing 382/596 atomic regions from SNP 114422 to 115022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,758 DEBUG Processing 397/561 atomic regions from SNP 118832 to 119432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,894 DEBUG Processing 641/661 atomic regions from SNP 192111 to 192711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,913 DEBUG Processing 383/596 atomic regions from SNP 114722 to 115322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,943 DEBUG Processing 398/561 atomic regions from SNP 119132 to 119732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,102 DEBUG Processing 642/661 atomic regions from SNP 192411 to 193011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,103 DEBUG Processing 384/596 atomic regions from SNP 115022 to 115622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,131 DEBUG Processing 399/561 atomic regions from SNP 119432 to 120032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,277 DEBUG Subchromosome time: 176.494497940992, subchromosome SNPs: 203339 2025-01-31 09:55:09,278 DEBUG Estimated BADs: [1.33, 0.66, 1.33, 3.98, 10.62, 0.66, 13.27, 2.65, 1.33, 0.33, 1.33, 3.98, 1.33, 5.31, 1.33, 2.65, 1.33, 3.98, 1.33, 3.98, 1.33, 0.44, 2.65, 0.66, 0.33, 1.33, 2.65, 1.33, 2.65, 1.33, 0.66, 2.65] SNP counts: [2806, 6926, 21027, 999, 553, 1774, 894, 1854, 3021, 2104, 38487, 892, 8779, 2021, 4942, 5224, 3423, 1424, 13201, 1304, 7262, 4602, 2696, 5412, 5420, 14883, 8684, 18006, 1967, 4756, 7212, 784] SNP IDs counts: [2806, 6926, 21027, 999, 553, 1774, 894, 1854, 3021, 2104, 38487, 892, 8779, 2021, 4942, 5224, 3423, 1424, 13201, 1304, 7262, 4602, 2696, 5412, 5420, 14883, 8684, 18006, 1967, 4756, 7212, 784] Critical gap: 597545bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.70Mbp, 8.77Mbp, 21.16Mbp, 21.71Mbp, 22.05Mbp, 23.28Mbp, 23.77Mbp, 24.76Mbp, 26.46Mbp, 27.71Mbp, 48.83Mbp, 49.30Mbp, 54.44Mbp, 55.51Mbp, 58.10Mbp, 60.90Mbp, 63.43Mbp, 64.18Mbp, 73.25Mbp, 73.93Mbp, 78.21Mbp, 80.88Mbp, 82.39Mbp, 85.45Mbp, 88.76Mbp, 96.93Mbp, 101.69Mbp, 111.68Mbp, 112.73Mbp, 115.32Mbp, 119.43Mbp, 120.42Mbp] 2025-01-31 09:55:09,278 DEBUG chr13 time: 176.49498156795744 s 2025-01-31 09:55:09,293 DEBUG Processing 385/596 atomic regions from SNP 115322 to 115922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,311 DEBUG Processing 643/661 atomic regions from SNP 192711 to 193311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,314 DEBUG Processing 400/561 atomic regions from SNP 119732 to 120332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,395 DEBUG chr13: Fitting background model for 32 segments 2025-01-31 09:55:09,482 DEBUG Processing 386/596 atomic regions from SNP 115622 to 116222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,500 DEBUG Processing 401/561 atomic regions from SNP 120032 to 120632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,518 DEBUG Processing 644/661 atomic regions from SNP 193011 to 193611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,681 DEBUG Processing 387/596 atomic regions from SNP 115922 to 116522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,692 DEBUG Processing 402/561 atomic regions from SNP 120332 to 120932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,729 DEBUG Processing 645/661 atomic regions from SNP 193311 to 193911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,881 DEBUG Processing 388/596 atomic regions from SNP 116222 to 116822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,885 DEBUG Processing 403/561 atomic regions from SNP 120632 to 121232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,942 DEBUG Processing 646/661 atomic regions from SNP 193611 to 194211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,079 DEBUG Processing 404/561 atomic regions from SNP 120932 to 121532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,083 DEBUG Processing 389/596 atomic regions from SNP 116522 to 117122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,154 DEBUG Processing 647/661 atomic regions from SNP 193911 to 194511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,276 DEBUG Processing 405/561 atomic regions from SNP 121232 to 121832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,291 DEBUG Processing 390/596 atomic regions from SNP 116822 to 117422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,358 DEBUG Processing 648/661 atomic regions from SNP 194211 to 194811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,479 DEBUG Processing 406/561 atomic regions from SNP 121532 to 122132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,499 DEBUG Processing 391/596 atomic regions from SNP 117122 to 117722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,583 DEBUG Processing 649/661 atomic regions from SNP 194511 to 195111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,690 DEBUG Processing 407/561 atomic regions from SNP 121832 to 122432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,715 DEBUG Processing 392/596 atomic regions from SNP 117422 to 118022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,796 DEBUG Processing 650/661 atomic regions from SNP 194811 to 195411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,883 DEBUG Processing 408/561 atomic regions from SNP 122132 to 122732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,921 DEBUG Processing 393/596 atomic regions from SNP 117722 to 118322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,010 DEBUG Processing 651/661 atomic regions from SNP 195111 to 195711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,079 DEBUG Processing 409/561 atomic regions from SNP 122432 to 123032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,129 DEBUG Processing 394/596 atomic regions from SNP 118022 to 118622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,223 DEBUG Processing 652/661 atomic regions from SNP 195411 to 196011 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,273 DEBUG Processing 410/561 atomic regions from SNP 122732 to 123332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,337 DEBUG Processing 395/596 atomic regions from SNP 118322 to 118922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,471 DEBUG Processing 653/661 atomic regions from SNP 195711 to 196311 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,486 DEBUG Processing 411/561 atomic regions from SNP 123032 to 123632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,601 DEBUG Processing 396/596 atomic regions from SNP 118622 to 119222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,701 DEBUG Processing 412/561 atomic regions from SNP 123332 to 123932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,716 DEBUG Processing 654/661 atomic regions from SNP 196011 to 196611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,811 DEBUG Processing 397/596 atomic regions from SNP 118922 to 119522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,925 DEBUG Processing 413/561 atomic regions from SNP 123632 to 124232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,969 DEBUG Processing 655/661 atomic regions from SNP 196311 to 196911 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,101 DEBUG Processing 398/596 atomic regions from SNP 119222 to 119822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,170 DEBUG Processing 414/561 atomic regions from SNP 123932 to 124532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,258 DEBUG Processing 656/661 atomic regions from SNP 196611 to 197211 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,314 DEBUG Processing 399/596 atomic regions from SNP 119522 to 120122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,373 DEBUG Processing 415/561 atomic regions from SNP 124232 to 124832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,474 DEBUG Processing 657/661 atomic regions from SNP 196911 to 197511 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,518 DEBUG Processing 400/596 atomic regions from SNP 119822 to 120422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,592 DEBUG Processing 416/561 atomic regions from SNP 124532 to 125132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,747 DEBUG Processing 658/661 atomic regions from SNP 197211 to 197811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,776 DEBUG Processing 401/596 atomic regions from SNP 120122 to 120722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,852 DEBUG Processing 417/561 atomic regions from SNP 124832 to 125432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,051 DEBUG Processing 659/661 atomic regions from SNP 197511 to 198111 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,058 DEBUG Processing 402/596 atomic regions from SNP 120422 to 121022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,140 DEBUG Processing 418/561 atomic regions from SNP 125132 to 125732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,251 DEBUG Segmenting atomic regions: 2025-01-31 09:55:13,319 DEBUG Processing 1/531 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,348 DEBUG Processing 403/596 atomic regions from SNP 120722 to 121322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,370 DEBUG Processing 660/661 atomic regions from SNP 197811 to 198411 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,418 DEBUG Processing 419/561 atomic regions from SNP 125432 to 126032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,613 DEBUG Processing 2/531 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,652 DEBUG Processing 404/596 atomic regions from SNP 121022 to 121622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,708 DEBUG Processing 661/661 atomic regions from SNP 198111 to 198711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,720 DEBUG Processing 420/561 atomic regions from SNP 125732 to 126332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,885 DEBUG Processing 3/531 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,927 DEBUG Processing 405/596 atomic regions from SNP 121322 to 121922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,952 DEBUG Unique SNPs positions in subchromosome 1: 198712 2025-01-31 09:55:14,011 DEBUG Processing 421/561 atomic regions from SNP 126032 to 126632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,160 DEBUG Processing 4/531 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,222 DEBUG Processing 406/596 atomic regions from SNP 121622 to 122222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,313 DEBUG Processing 422/561 atomic regions from SNP 126332 to 126932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,455 DEBUG Processing 5/531 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,528 DEBUG Processing 407/596 atomic regions from SNP 121922 to 122522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,611 DEBUG Processing 423/561 atomic regions from SNP 126632 to 127232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,734 DEBUG Processing 6/531 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,816 DEBUG Processing 408/596 atomic regions from SNP 122222 to 122822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,845 DEBUG Processing 424/561 atomic regions from SNP 126932 to 127532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,001 DEBUG Processing 7/531 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,110 DEBUG Processing 425/561 atomic regions from SNP 127232 to 127832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,122 DEBUG Processing 409/596 atomic regions from SNP 122522 to 123122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,249 DEBUG Processing 8/531 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,345 DEBUG Processing 426/561 atomic regions from SNP 127532 to 128132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,365 DEBUG Processing 410/596 atomic regions from SNP 122822 to 123422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,504 DEBUG Processing 9/531 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,603 DEBUG Processing 427/561 atomic regions from SNP 127832 to 128432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,622 DEBUG Processing 411/596 atomic regions from SNP 123122 to 123722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,726 DEBUG Processing 10/531 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,867 DEBUG Processing 428/561 atomic regions from SNP 128132 to 128732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,940 DEBUG Processing 412/596 atomic regions from SNP 123422 to 124022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,977 DEBUG Processing 11/531 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,160 DEBUG Processing 429/561 atomic regions from SNP 128432 to 129032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,266 DEBUG Processing 413/596 atomic regions from SNP 123722 to 124322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,274 DEBUG Processing 12/531 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,461 DEBUG Processing 430/561 atomic regions from SNP 128732 to 129332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,556 DEBUG Processing 13/531 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,563 DEBUG Processing 414/596 atomic regions from SNP 124022 to 124622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,729 DEBUG Processing 431/561 atomic regions from SNP 129032 to 129632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,837 DEBUG Processing 14/531 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,848 DEBUG Processing 415/596 atomic regions from SNP 124322 to 124922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,013 DEBUG Processing 432/561 atomic regions from SNP 129332 to 129932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,130 DEBUG Processing 15/531 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,148 DEBUG Processing 416/596 atomic regions from SNP 124622 to 125222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,319 DEBUG Processing 433/561 atomic regions from SNP 129632 to 130232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,423 DEBUG Processing 16/531 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,444 DEBUG Processing 417/596 atomic regions from SNP 124922 to 125522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,603 DEBUG Processing 434/561 atomic regions from SNP 129932 to 130532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,708 DEBUG Processing 17/531 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,750 DEBUG Processing 418/596 atomic regions from SNP 125222 to 125822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,880 DEBUG Processing 435/561 atomic regions from SNP 130232 to 130832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,977 DEBUG Processing 18/531 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,006 DEBUG Processing 419/596 atomic regions from SNP 125522 to 126122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,116 DEBUG Processing 436/561 atomic regions from SNP 130532 to 131132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,236 DEBUG Processing 19/531 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,266 DEBUG Processing 420/596 atomic regions from SNP 125822 to 126422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,358 DEBUG Processing 437/561 atomic regions from SNP 130832 to 131432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,497 DEBUG Processing 20/531 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,542 DEBUG Processing 421/596 atomic regions from SNP 126122 to 126722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,629 DEBUG Processing 438/561 atomic regions from SNP 131132 to 131732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,776 DEBUG Processing 21/531 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,830 DEBUG Processing 422/596 atomic regions from SNP 126422 to 127022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,902 DEBUG Processing 439/561 atomic regions from SNP 131432 to 132032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,059 DEBUG Processing 22/531 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,111 DEBUG Processing 423/596 atomic regions from SNP 126722 to 127322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,177 DEBUG Processing 440/561 atomic regions from SNP 131732 to 132332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,211 DEBUG Subchromosome time: 164.58099500101525, subchromosome SNPs: 198712 2025-01-31 09:55:19,212 DEBUG Estimated BADs: [2.58, 0.65, 2.58, 0.65, 6.45, 1.29, 2.58, 0.65, 1.29, 0.32, 0.65, 2.58, 1.29, 5.16, 1.29, 2.58, 6.45, 1.29, 0.32, 1.29, 3.87, 1.29, 12.91, 1.29, 5.16, 0.65, 2.58, 0.65] SNP counts: [4311, 19928, 2600, 3622, 656, 12955, 2112, 31464, 15251, 5708, 9083, 6513, 6517, 1316, 5418, 12865, 962, 8318, 8400, 3324, 3527, 6806, 253, 10040, 5348, 4708, 3842, 2865] SNP IDs counts: [4311, 19928, 2600, 3622, 656, 12955, 2112, 31464, 15251, 5708, 9083, 6513, 6517, 1316, 5418, 12865, 962, 8318, 8400, 3324, 3527, 6806, 253, 10040, 5348, 4708, 3842, 2865] Critical gap: 602935bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.42Mbp, 16.80Mbp, 18.44Mbp, 24.56Mbp, 24.91Mbp, 31.94Mbp, 33.11Mbp, 51.55Mbp, 60.32Mbp, 63.84Mbp, 69.15Mbp, 72.65Mbp, 76.17Mbp, 76.89Mbp, 79.88Mbp, 86.76Mbp, 87.27Mbp, 92.36Mbp, 97.35Mbp, 99.23Mbp, 101.09Mbp, 104.93Mbp, 105.06Mbp, 110.41Mbp, 113.23Mbp, 116.26Mbp, 118.35Mbp, 120.13Mbp] 2025-01-31 09:55:19,212 DEBUG chr12 time: 164.58166025194805 s 2025-01-31 09:55:19,342 DEBUG Processing 23/531 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,416 DEBUG chr12: Fitting background model for 28 segments 2025-01-31 09:55:19,438 DEBUG Processing 424/596 atomic regions from SNP 127022 to 127622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,477 DEBUG Processing 441/561 atomic regions from SNP 132032 to 132632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,617 DEBUG Processing 24/531 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,772 DEBUG Processing 442/561 atomic regions from SNP 132332 to 132932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,784 DEBUG Processing 425/596 atomic regions from SNP 127322 to 127922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,904 DEBUG Processing 25/531 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,079 DEBUG Processing 443/561 atomic regions from SNP 132632 to 133232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,134 DEBUG Processing 426/596 atomic regions from SNP 127622 to 128222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,200 DEBUG Processing 26/531 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,354 DEBUG Processing 444/561 atomic regions from SNP 132932 to 133532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,454 DEBUG Processing 427/596 atomic regions from SNP 127922 to 128522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,472 DEBUG Processing 27/531 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,621 DEBUG Processing 445/561 atomic regions from SNP 133232 to 133832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,772 DEBUG Processing 28/531 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,802 DEBUG Processing 428/596 atomic regions from SNP 128222 to 128822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,901 DEBUG Processing 446/561 atomic regions from SNP 133532 to 134132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,031 DEBUG Processing 29/531 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,125 DEBUG Processing 429/596 atomic regions from SNP 128522 to 129122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,169 DEBUG Processing 447/561 atomic regions from SNP 133832 to 134432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,290 DEBUG Processing 30/531 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,442 DEBUG Processing 430/596 atomic regions from SNP 128822 to 129422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,467 DEBUG Processing 448/561 atomic regions from SNP 134132 to 134732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,606 DEBUG Processing 31/531 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,812 DEBUG Processing 449/561 atomic regions from SNP 134432 to 135032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,824 DEBUG Processing 431/596 atomic regions from SNP 129122 to 129722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,938 DEBUG Processing 32/531 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,129 DEBUG Processing 450/561 atomic regions from SNP 134732 to 135332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,200 DEBUG Processing 432/596 atomic regions from SNP 129422 to 130022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,240 DEBUG Processing 33/531 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,410 DEBUG Processing 451/561 atomic regions from SNP 135032 to 135632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,520 DEBUG Processing 34/531 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,520 DEBUG Processing 433/596 atomic regions from SNP 129722 to 130322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,708 DEBUG Processing 452/561 atomic regions from SNP 135332 to 135932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,816 DEBUG Processing 35/531 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,857 DEBUG Processing 434/596 atomic regions from SNP 130022 to 130622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,963 DEBUG Processing 453/561 atomic regions from SNP 135632 to 136232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,085 DEBUG Processing 36/531 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,181 DEBUG Processing 435/596 atomic regions from SNP 130322 to 130922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,245 DEBUG Processing 454/561 atomic regions from SNP 135932 to 136532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,377 DEBUG Processing 37/531 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,488 DEBUG Processing 436/596 atomic regions from SNP 130622 to 131222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,531 DEBUG Processing 455/561 atomic regions from SNP 136232 to 136832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,648 DEBUG Processing 38/531 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,817 DEBUG Processing 437/596 atomic regions from SNP 130922 to 131522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,817 DEBUG Processing 456/561 atomic regions from SNP 136532 to 137132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,923 DEBUG Processing 39/531 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,102 DEBUG Processing 457/561 atomic regions from SNP 136832 to 137432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,143 DEBUG Processing 438/596 atomic regions from SNP 131222 to 131822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,205 DEBUG Processing 40/531 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,314 DEBUG Processing 458/561 atomic regions from SNP 137132 to 137732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,404 DEBUG Processing 439/596 atomic regions from SNP 131522 to 132122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,454 DEBUG Processing 41/531 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,572 DEBUG Processing 459/561 atomic regions from SNP 137432 to 138032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,691 DEBUG Processing 42/531 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,699 DEBUG Processing 440/596 atomic regions from SNP 131822 to 132422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,849 DEBUG Processing 460/561 atomic regions from SNP 137732 to 138332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,959 DEBUG Processing 43/531 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,018 DEBUG Processing 441/596 atomic regions from SNP 132122 to 132722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,130 DEBUG Processing 461/561 atomic regions from SNP 138032 to 138632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,223 DEBUG Processing 44/531 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,321 DEBUG Processing 442/596 atomic regions from SNP 132422 to 133022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,405 DEBUG Processing 462/561 atomic regions from SNP 138332 to 138932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,490 DEBUG Processing 45/531 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,608 DEBUG Processing 443/596 atomic regions from SNP 132722 to 133322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,618 DEBUG Processing 463/561 atomic regions from SNP 138632 to 139232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,727 DEBUG Processing 46/531 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,869 DEBUG Processing 464/561 atomic regions from SNP 138932 to 139532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,900 DEBUG Processing 444/596 atomic regions from SNP 133022 to 133622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,958 DEBUG Processing 47/531 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,073 DEBUG Processing 465/561 atomic regions from SNP 139232 to 139832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,140 DEBUG Processing 445/596 atomic regions from SNP 133322 to 133922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,152 DEBUG Processing 48/531 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,261 DEBUG Processing 466/561 atomic regions from SNP 139532 to 140132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,336 DEBUG Processing 49/531 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,376 DEBUG Processing 446/596 atomic regions from SNP 133622 to 134222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,447 DEBUG Processing 467/561 atomic regions from SNP 139832 to 140432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,516 DEBUG Processing 50/531 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,607 DEBUG Processing 447/596 atomic regions from SNP 133922 to 134522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,636 DEBUG Processing 468/561 atomic regions from SNP 140132 to 140732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,693 DEBUG Processing 51/531 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,822 DEBUG Processing 469/561 atomic regions from SNP 140432 to 141032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,836 DEBUG Processing 448/596 atomic regions from SNP 134222 to 134822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,877 DEBUG Processing 52/531 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,007 DEBUG Processing 470/561 atomic regions from SNP 140732 to 141332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,077 DEBUG Processing 53/531 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,080 DEBUG Processing 449/596 atomic regions from SNP 134522 to 135122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,203 DEBUG Processing 471/561 atomic regions from SNP 141032 to 141632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,271 DEBUG Processing 54/531 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,317 DEBUG Processing 450/596 atomic regions from SNP 134822 to 135422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,393 DEBUG Processing 472/561 atomic regions from SNP 141332 to 141932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,454 DEBUG Processing 55/531 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,547 DEBUG Processing 451/596 atomic regions from SNP 135122 to 135722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,583 DEBUG Processing 473/561 atomic regions from SNP 141632 to 142232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,649 DEBUG Processing 56/531 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,769 DEBUG Processing 474/561 atomic regions from SNP 141932 to 142532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,769 DEBUG Processing 452/596 atomic regions from SNP 135422 to 136022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,836 DEBUG Processing 57/531 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,956 DEBUG Processing 475/561 atomic regions from SNP 142232 to 142832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,988 DEBUG Processing 453/596 atomic regions from SNP 135722 to 136322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,022 DEBUG Processing 58/531 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,150 DEBUG Processing 476/561 atomic regions from SNP 142532 to 143132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,214 DEBUG Processing 454/596 atomic regions from SNP 136022 to 136622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,214 DEBUG Processing 59/531 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,335 DEBUG Processing 477/561 atomic regions from SNP 142832 to 143432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,398 DEBUG Processing 60/531 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,447 DEBUG Processing 455/596 atomic regions from SNP 136322 to 136922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,520 DEBUG Processing 478/561 atomic regions from SNP 143132 to 143732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,576 DEBUG Processing 61/531 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,671 DEBUG Processing 456/596 atomic regions from SNP 136622 to 137222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,708 DEBUG Processing 479/561 atomic regions from SNP 143432 to 144032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,757 DEBUG Processing 62/531 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,902 DEBUG Processing 480/561 atomic regions from SNP 143732 to 144332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,902 DEBUG Processing 457/596 atomic regions from SNP 136922 to 137522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,947 DEBUG Processing 63/531 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,094 DEBUG Processing 481/561 atomic regions from SNP 144032 to 144632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,118 DEBUG Processing 458/596 atomic regions from SNP 137222 to 137822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,138 DEBUG Processing 64/531 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,283 DEBUG Processing 482/561 atomic regions from SNP 144332 to 144932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,335 DEBUG Processing 65/531 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,344 DEBUG Processing 459/596 atomic regions from SNP 137522 to 138122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,471 DEBUG Processing 483/561 atomic regions from SNP 144632 to 145232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,529 DEBUG Processing 66/531 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,582 DEBUG Processing 460/596 atomic regions from SNP 137822 to 138422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,663 DEBUG Processing 484/561 atomic regions from SNP 144932 to 145532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,715 DEBUG Processing 67/531 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,816 DEBUG Processing 461/596 atomic regions from SNP 138122 to 138722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,859 DEBUG Processing 485/561 atomic regions from SNP 145232 to 145832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,902 DEBUG Processing 68/531 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,046 DEBUG Processing 462/596 atomic regions from SNP 138422 to 139022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,052 DEBUG Processing 486/561 atomic regions from SNP 145532 to 146132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,092 DEBUG Processing 69/531 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,242 DEBUG Processing 487/561 atomic regions from SNP 145832 to 146432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,275 DEBUG Processing 463/596 atomic regions from SNP 138722 to 139322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,279 DEBUG Processing 70/531 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,438 DEBUG Processing 488/561 atomic regions from SNP 146132 to 146732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,488 DEBUG Processing 71/531 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,549 DEBUG Processing 464/596 atomic regions from SNP 139022 to 139622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,630 DEBUG Processing 489/561 atomic regions from SNP 146432 to 147032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,675 DEBUG Processing 72/531 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,806 DEBUG Processing 465/596 atomic regions from SNP 139322 to 139922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,839 DEBUG Processing 490/561 atomic regions from SNP 146732 to 147332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,902 DEBUG Processing 73/531 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,114 DEBUG Processing 466/596 atomic regions from SNP 139622 to 140222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,117 DEBUG Processing 491/561 atomic regions from SNP 147032 to 147632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,175 DEBUG Processing 74/531 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,403 DEBUG Processing 492/561 atomic regions from SNP 147332 to 147932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,405 DEBUG Processing 467/596 atomic regions from SNP 139922 to 140522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,473 DEBUG Processing 75/531 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,677 DEBUG Processing 493/561 atomic regions from SNP 147632 to 148232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,689 DEBUG Processing 468/596 atomic regions from SNP 140222 to 140822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,755 DEBUG Processing 76/531 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,955 DEBUG Processing 494/561 atomic regions from SNP 147932 to 148532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,974 DEBUG Processing 469/596 atomic regions from SNP 140522 to 141122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,974 DEBUG Processing 77/531 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,158 DEBUG Processing 495/561 atomic regions from SNP 148232 to 148832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,190 DEBUG Processing 78/531 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,229 DEBUG Processing 470/596 atomic regions from SNP 140822 to 141422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,350 DEBUG Processing 496/561 atomic regions from SNP 148532 to 149132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,376 DEBUG Processing 79/531 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,452 DEBUG Processing 471/596 atomic regions from SNP 141122 to 141722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,562 DEBUG Processing 497/561 atomic regions from SNP 148832 to 149432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,563 DEBUG Processing 80/531 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,684 DEBUG Processing 472/596 atomic regions from SNP 141422 to 142022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,744 DEBUG Processing 81/531 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,767 DEBUG Processing 498/561 atomic regions from SNP 149132 to 149732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,908 DEBUG Processing 473/596 atomic regions from SNP 141722 to 142322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,927 DEBUG Processing 82/531 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,978 DEBUG Processing 499/561 atomic regions from SNP 149432 to 150032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,105 DEBUG Processing 474/596 atomic regions from SNP 142022 to 142622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,111 DEBUG Processing 83/531 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,166 DEBUG Processing 500/561 atomic regions from SNP 149732 to 150332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,298 DEBUG Processing 84/531 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,301 DEBUG Processing 475/596 atomic regions from SNP 142322 to 142922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,358 DEBUG Processing 501/561 atomic regions from SNP 150032 to 150632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,480 DEBUG Processing 85/531 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,508 DEBUG Processing 476/596 atomic regions from SNP 142622 to 143222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,581 DEBUG Processing 502/561 atomic regions from SNP 150332 to 150932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,703 DEBUG Processing 86/531 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,757 DEBUG Processing 477/596 atomic regions from SNP 142922 to 143522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,779 DEBUG Processing 503/561 atomic regions from SNP 150632 to 151232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,896 DEBUG Processing 87/531 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,971 DEBUG Processing 478/596 atomic regions from SNP 143222 to 143822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,976 DEBUG Processing 504/561 atomic regions from SNP 150932 to 151532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,080 DEBUG Processing 88/531 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,168 DEBUG Processing 505/561 atomic regions from SNP 151232 to 151832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,177 DEBUG Processing 479/596 atomic regions from SNP 143522 to 144122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,259 DEBUG Processing 89/531 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,359 DEBUG Processing 506/561 atomic regions from SNP 151532 to 152132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,393 DEBUG Processing 480/596 atomic regions from SNP 143822 to 144422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,445 DEBUG Processing 90/531 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,551 DEBUG Processing 507/561 atomic regions from SNP 151832 to 152432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,608 DEBUG Processing 481/596 atomic regions from SNP 144122 to 144722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,635 DEBUG Processing 91/531 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,750 DEBUG Processing 508/561 atomic regions from SNP 152132 to 152732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,810 DEBUG Processing 482/596 atomic regions from SNP 144422 to 145022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,823 DEBUG Processing 92/531 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,934 DEBUG Processing 509/561 atomic regions from SNP 152432 to 153032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,002 DEBUG Processing 93/531 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,011 DEBUG Processing 483/596 atomic regions from SNP 144722 to 145322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,121 DEBUG Processing 510/561 atomic regions from SNP 152732 to 153332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,180 DEBUG Processing 94/531 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,217 DEBUG Processing 484/596 atomic regions from SNP 145022 to 145622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,308 DEBUG Processing 511/561 atomic regions from SNP 153032 to 153632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,365 DEBUG Processing 95/531 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,421 DEBUG Processing 485/596 atomic regions from SNP 145322 to 145922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,500 DEBUG Processing 512/561 atomic regions from SNP 153332 to 153932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,549 DEBUG Processing 96/531 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,637 DEBUG Processing 486/596 atomic regions from SNP 145622 to 146222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,707 DEBUG Processing 513/561 atomic regions from SNP 153632 to 154232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,726 DEBUG Processing 97/531 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,855 DEBUG Processing 487/596 atomic regions from SNP 145922 to 146522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,907 DEBUG Processing 98/531 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,915 DEBUG Processing 514/561 atomic regions from SNP 153932 to 154532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,060 DEBUG Processing 488/596 atomic regions from SNP 146222 to 146822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,094 DEBUG Processing 99/531 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,102 DEBUG Processing 515/561 atomic regions from SNP 154232 to 154832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,262 DEBUG Processing 489/596 atomic regions from SNP 146522 to 147122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,285 DEBUG Processing 100/531 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,303 DEBUG Processing 516/561 atomic regions from SNP 154532 to 155132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,462 DEBUG Processing 490/596 atomic regions from SNP 146822 to 147422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,474 DEBUG Processing 101/531 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,531 DEBUG Processing 517/561 atomic regions from SNP 154832 to 155432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,669 DEBUG Processing 491/596 atomic regions from SNP 147122 to 147722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,669 DEBUG Processing 102/531 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,756 DEBUG Processing 518/561 atomic regions from SNP 155132 to 155732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,865 DEBUG Processing 103/531 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,875 DEBUG Processing 492/596 atomic regions from SNP 147422 to 148022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,977 DEBUG Processing 519/561 atomic regions from SNP 155432 to 156032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,067 DEBUG Processing 104/531 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,092 DEBUG Processing 493/596 atomic regions from SNP 147722 to 148322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,192 DEBUG Processing 520/561 atomic regions from SNP 155732 to 156332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,270 DEBUG Processing 105/531 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,313 DEBUG Processing 494/596 atomic regions from SNP 148022 to 148622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,457 DEBUG Processing 521/561 atomic regions from SNP 156032 to 156632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,473 DEBUG Processing 106/531 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,528 DEBUG Processing 495/596 atomic regions from SNP 148322 to 148922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,719 DEBUG Processing 107/531 atomic regions from SNP 31906 to 32507 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,724 DEBUG Processing 522/561 atomic regions from SNP 156332 to 156932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,772 DEBUG Processing 496/596 atomic regions from SNP 148622 to 149222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,961 DEBUG Processing 108/531 atomic regions from SNP 32207 to 32808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,001 DEBUG Processing 523/561 atomic regions from SNP 156632 to 157232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,023 DEBUG Processing 497/596 atomic regions from SNP 148922 to 149522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,225 DEBUG Processing 109/531 atomic regions from SNP 32508 to 33109 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,293 DEBUG Processing 498/596 atomic regions from SNP 149222 to 149822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,293 DEBUG Processing 524/561 atomic regions from SNP 156932 to 157532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,488 DEBUG Processing 110/531 atomic regions from SNP 32809 to 33410 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,579 DEBUG Processing 525/561 atomic regions from SNP 157232 to 157832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,583 DEBUG Processing 499/596 atomic regions from SNP 149522 to 150122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,743 DEBUG Processing 111/531 atomic regions from SNP 33110 to 33711 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,866 DEBUG Processing 526/561 atomic regions from SNP 157532 to 158132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,869 DEBUG Processing 500/596 atomic regions from SNP 149822 to 150422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,991 DEBUG Processing 112/531 atomic regions from SNP 33411 to 34012 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,149 DEBUG Processing 501/596 atomic regions from SNP 150122 to 150722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,167 DEBUG Processing 527/561 atomic regions from SNP 157832 to 158432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,292 DEBUG Processing 113/531 atomic regions from SNP 33712 to 34313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,396 DEBUG Processing 502/596 atomic regions from SNP 150422 to 151022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,465 DEBUG Processing 528/561 atomic regions from SNP 158132 to 158732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,595 DEBUG Processing 114/531 atomic regions from SNP 34013 to 34614 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,654 DEBUG Processing 503/596 atomic regions from SNP 150722 to 151322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,735 DEBUG Processing 529/561 atomic regions from SNP 158432 to 159032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,901 DEBUG Processing 115/531 atomic regions from SNP 34314 to 34915 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,931 DEBUG Processing 504/596 atomic regions from SNP 151022 to 151622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,022 DEBUG Processing 530/561 atomic regions from SNP 158732 to 159332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,220 DEBUG Processing 116/531 atomic regions from SNP 34615 to 35216 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,258 DEBUG Processing 505/596 atomic regions from SNP 151322 to 151922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,309 DEBUG Processing 531/561 atomic regions from SNP 159032 to 159632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,523 DEBUG Processing 117/531 atomic regions from SNP 34916 to 35517 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,569 DEBUG Processing 506/596 atomic regions from SNP 151622 to 152222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,583 DEBUG Processing 532/561 atomic regions from SNP 159332 to 159932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,819 DEBUG Processing 118/531 atomic regions from SNP 35217 to 35818 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,866 DEBUG Processing 533/561 atomic regions from SNP 159632 to 160232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,883 DEBUG Processing 507/596 atomic regions from SNP 151922 to 152522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,105 DEBUG Processing 119/531 atomic regions from SNP 35518 to 36119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,154 DEBUG Processing 534/561 atomic regions from SNP 159932 to 160532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,206 DEBUG Processing 508/596 atomic regions from SNP 152222 to 152822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,399 DEBUG Processing 120/531 atomic regions from SNP 35819 to 36420 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,465 DEBUG Processing 535/561 atomic regions from SNP 160232 to 160832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,527 DEBUG Processing 509/596 atomic regions from SNP 152522 to 153122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,680 DEBUG Processing 121/531 atomic regions from SNP 36120 to 36721 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,780 DEBUG Processing 536/561 atomic regions from SNP 160532 to 161132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,826 DEBUG Processing 510/596 atomic regions from SNP 152822 to 153422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,954 DEBUG Processing 122/531 atomic regions from SNP 36421 to 37022 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,070 DEBUG Processing 511/596 atomic regions from SNP 153122 to 153722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,072 DEBUG Processing 537/561 atomic regions from SNP 160832 to 161432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,169 DEBUG Processing 123/531 atomic regions from SNP 36722 to 37323 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,294 DEBUG Processing 512/596 atomic regions from SNP 153422 to 154022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,303 DEBUG Processing 538/561 atomic regions from SNP 161132 to 161732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,403 DEBUG Processing 124/531 atomic regions from SNP 37023 to 37624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,492 DEBUG Processing 513/596 atomic regions from SNP 153722 to 154322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,524 DEBUG Processing 539/561 atomic regions from SNP 161432 to 162032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,624 DEBUG Processing 125/531 atomic regions from SNP 37324 to 37925 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,687 DEBUG Processing 514/596 atomic regions from SNP 154022 to 154622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,747 DEBUG Processing 540/561 atomic regions from SNP 161732 to 162332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,844 DEBUG Processing 126/531 atomic regions from SNP 37625 to 38226 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,884 DEBUG Processing 515/596 atomic regions from SNP 154322 to 154922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,964 DEBUG Processing 541/561 atomic regions from SNP 162032 to 162632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,048 DEBUG Processing 127/531 atomic regions from SNP 37926 to 38527 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,079 DEBUG Processing 516/596 atomic regions from SNP 154622 to 155222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,180 DEBUG Processing 542/561 atomic regions from SNP 162332 to 162932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,268 DEBUG Processing 128/531 atomic regions from SNP 38227 to 38828 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,297 DEBUG Processing 517/596 atomic regions from SNP 154922 to 155522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,379 DEBUG Processing 543/561 atomic regions from SNP 162632 to 163232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,489 DEBUG Processing 129/531 atomic regions from SNP 38528 to 39129 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,506 DEBUG Processing 518/596 atomic regions from SNP 155222 to 155822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,585 DEBUG Processing 544/561 atomic regions from SNP 162932 to 163532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,689 DEBUG Processing 130/531 atomic regions from SNP 38829 to 39430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,703 DEBUG Processing 519/596 atomic regions from SNP 155522 to 156122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,781 DEBUG Processing 545/561 atomic regions from SNP 163232 to 163832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,895 DEBUG Processing 520/596 atomic regions from SNP 155822 to 156422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,904 DEBUG Processing 131/531 atomic regions from SNP 39130 to 39731 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,978 DEBUG Processing 546/561 atomic regions from SNP 163532 to 164132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,102 DEBUG Processing 521/596 atomic regions from SNP 156122 to 156722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,133 DEBUG Processing 132/531 atomic regions from SNP 39431 to 40032 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,189 DEBUG Processing 547/561 atomic regions from SNP 163832 to 164432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,300 DEBUG Processing 522/596 atomic regions from SNP 156422 to 157022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,355 DEBUG Processing 133/531 atomic regions from SNP 39732 to 40333 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,415 DEBUG Processing 548/561 atomic regions from SNP 164132 to 164732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,505 DEBUG Processing 523/596 atomic regions from SNP 156722 to 157322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,554 DEBUG Processing 134/531 atomic regions from SNP 40033 to 40634 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,643 DEBUG Processing 549/561 atomic regions from SNP 164432 to 165032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,760 DEBUG Processing 524/596 atomic regions from SNP 157022 to 157622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,799 DEBUG Processing 135/531 atomic regions from SNP 40334 to 40935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,864 DEBUG Processing 550/561 atomic regions from SNP 164732 to 165332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,015 DEBUG Processing 525/596 atomic regions from SNP 157322 to 157922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,053 DEBUG Processing 136/531 atomic regions from SNP 40635 to 41236 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,099 DEBUG Processing 551/561 atomic regions from SNP 165032 to 165632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,255 DEBUG Processing 526/596 atomic regions from SNP 157622 to 158222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,311 DEBUG Processing 552/561 atomic regions from SNP 165332 to 165932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,317 DEBUG Processing 137/531 atomic regions from SNP 40936 to 41537 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,475 DEBUG Processing 527/596 atomic regions from SNP 157922 to 158522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,555 DEBUG Processing 553/561 atomic regions from SNP 165632 to 166232 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,567 DEBUG Processing 138/531 atomic regions from SNP 41237 to 41838 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,685 DEBUG Processing 528/596 atomic regions from SNP 158222 to 158822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,771 DEBUG Processing 554/561 atomic regions from SNP 165932 to 166532 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,806 DEBUG Processing 139/531 atomic regions from SNP 41538 to 42139 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,919 DEBUG Processing 529/596 atomic regions from SNP 158522 to 159122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,002 DEBUG Processing 555/561 atomic regions from SNP 166232 to 166832 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,038 DEBUG Processing 140/531 atomic regions from SNP 41839 to 42440 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,172 DEBUG Processing 530/596 atomic regions from SNP 158822 to 159422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,289 DEBUG Processing 556/561 atomic regions from SNP 166532 to 167132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,302 DEBUG Processing 141/531 atomic regions from SNP 42140 to 42741 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,394 DEBUG Processing 531/596 atomic regions from SNP 159122 to 159722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,501 DEBUG Processing 557/561 atomic regions from SNP 166832 to 167432 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,514 DEBUG Processing 142/531 atomic regions from SNP 42441 to 43042 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,593 DEBUG Processing 532/596 atomic regions from SNP 159422 to 160022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,693 DEBUG Processing 558/561 atomic regions from SNP 167132 to 167732 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,730 DEBUG Processing 143/531 atomic regions from SNP 42742 to 43343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,801 DEBUG Processing 533/596 atomic regions from SNP 159722 to 160322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,890 DEBUG Processing 559/561 atomic regions from SNP 167432 to 168032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,943 DEBUG Processing 144/531 atomic regions from SNP 43043 to 43644 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,996 DEBUG Processing 534/596 atomic regions from SNP 160022 to 160622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,081 DEBUG Processing 560/561 atomic regions from SNP 167732 to 168332 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,152 DEBUG Processing 145/531 atomic regions from SNP 43344 to 43945 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,191 DEBUG Processing 535/596 atomic regions from SNP 160322 to 160922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,284 DEBUG Processing 561/561 atomic regions from SNP 168032 to 168632 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,365 DEBUG Processing 146/531 atomic regions from SNP 43645 to 44246 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,386 DEBUG Processing 536/596 atomic regions from SNP 160622 to 161222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,430 DEBUG Unique SNPs positions in subchromosome 1: 168633 2025-01-31 09:55:47,581 DEBUG Processing 537/596 atomic regions from SNP 160922 to 161522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,588 DEBUG Processing 147/531 atomic regions from SNP 43946 to 44547 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,771 DEBUG Processing 538/596 atomic regions from SNP 161222 to 161822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,790 DEBUG Processing 148/531 atomic regions from SNP 44247 to 44848 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,964 DEBUG Processing 539/596 atomic regions from SNP 161522 to 162122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,998 DEBUG Processing 149/531 atomic regions from SNP 44548 to 45149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,164 DEBUG Processing 540/596 atomic regions from SNP 161822 to 162422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,202 DEBUG Processing 150/531 atomic regions from SNP 44849 to 45450 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,377 DEBUG Processing 541/596 atomic regions from SNP 162122 to 162722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,399 DEBUG Processing 151/531 atomic regions from SNP 45150 to 45751 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,575 DEBUG Processing 542/596 atomic regions from SNP 162422 to 163022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,586 DEBUG Processing 152/531 atomic regions from SNP 45451 to 46052 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,768 DEBUG Processing 153/531 atomic regions from SNP 45752 to 46353 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,770 DEBUG Processing 543/596 atomic regions from SNP 162722 to 163322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,953 DEBUG Processing 154/531 atomic regions from SNP 46053 to 46654 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,968 DEBUG Processing 544/596 atomic regions from SNP 163022 to 163622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,131 DEBUG Processing 155/531 atomic regions from SNP 46354 to 46955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,160 DEBUG Processing 545/596 atomic regions from SNP 163322 to 163922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,306 DEBUG Processing 156/531 atomic regions from SNP 46655 to 47256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,350 DEBUG Processing 546/596 atomic regions from SNP 163622 to 164222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,484 DEBUG Processing 157/531 atomic regions from SNP 46956 to 47557 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,539 DEBUG Processing 547/596 atomic regions from SNP 163922 to 164522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,666 DEBUG Processing 158/531 atomic regions from SNP 47257 to 47858 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,724 DEBUG Processing 548/596 atomic regions from SNP 164222 to 164822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,848 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:55:49,853 DEBUG Processing 159/531 atomic regions from SNP 47558 to 48159 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,915 DEBUG Processing 549/596 atomic regions from SNP 164522 to 165122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,057 DEBUG Processing 160/531 atomic regions from SNP 47859 to 48460 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,109 DEBUG Processing 550/596 atomic regions from SNP 164822 to 165422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,251 DEBUG Processing 161/531 atomic regions from SNP 48160 to 48761 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,333 DEBUG Processing 551/596 atomic regions from SNP 165122 to 165722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,437 DEBUG Processing 162/531 atomic regions from SNP 48461 to 49062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,533 DEBUG Processing 552/596 atomic regions from SNP 165422 to 166022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,618 DEBUG Processing 163/531 atomic regions from SNP 48762 to 49363 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,741 DEBUG Processing 553/596 atomic regions from SNP 165722 to 166322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,804 DEBUG Processing 164/531 atomic regions from SNP 49063 to 49664 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,946 DEBUG Processing 554/596 atomic regions from SNP 166022 to 166622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,006 DEBUG Processing 165/531 atomic regions from SNP 49364 to 49965 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,140 DEBUG Processing 555/596 atomic regions from SNP 166322 to 166922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,187 DEBUG Processing 166/531 atomic regions from SNP 49665 to 50266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,331 DEBUG Processing 556/596 atomic regions from SNP 166622 to 167222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,368 DEBUG Processing 167/531 atomic regions from SNP 49966 to 50567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,521 DEBUG Processing 557/596 atomic regions from SNP 166922 to 167522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,547 DEBUG Processing 168/531 atomic regions from SNP 50267 to 50868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,711 DEBUG Processing 558/596 atomic regions from SNP 167222 to 167822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,728 DEBUG Processing 169/531 atomic regions from SNP 50568 to 51169 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,907 DEBUG Processing 559/596 atomic regions from SNP 167522 to 168122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,913 DEBUG Processing 170/531 atomic regions from SNP 50869 to 51470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,094 DEBUG Processing 171/531 atomic regions from SNP 51170 to 51771 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,095 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:55:52,101 DEBUG Processing 560/596 atomic regions from SNP 167822 to 168422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,284 DEBUG Processing 172/531 atomic regions from SNP 51471 to 52072 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,295 DEBUG Processing 561/596 atomic regions from SNP 168122 to 168722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,495 DEBUG Processing 173/531 atomic regions from SNP 51772 to 52373 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,510 DEBUG Processing 562/596 atomic regions from SNP 168422 to 169022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,550 DEBUG Subchromosome time: 139.5488004439976, subchromosome SNPs: 168633 2025-01-31 09:55:52,550 DEBUG Estimated BADs: [2.74, 0.69, 2.74, 1.37, 4.11, 1.37, 9.59, 2.74, 0.69, 1.37, 2.74, 0.69, 0.34, 1.37, 0.34, 0.69, 1.37, 4.11, 2.74] SNP counts: [4000, 5143, 11145, 4420, 3614, 2425, 424, 4657, 8078, 6627, 14099, 23398, 5904, 5181, 5696, 44451, 4164, 8406, 6801] SNP IDs counts: [4000, 5143, 11145, 4420, 3614, 2425, 424, 4657, 8078, 6627, 14099, 23398, 5904, 5181, 5696, 44451, 4164, 8406, 6801] Critical gap: 531275bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.09Mbp], 5.59Mbp, 8.40Mbp, 14.46Mbp, 17.07Mbp, 18.99Mbp, 20.50Mbp, 20.72Mbp, 23.25Mbp, 27.74Mbp, 31.35Mbp, 38.94Mbp, 52.28Mbp, 55.82Mbp, 58.80Mbp, 62.27Mbp, 87.69Mbp, 90.00Mbp, 94.45Mbp, 98.21Mbp] 2025-01-31 09:55:52,550 DEBUG chr16 time: 139.54927314794622 s 2025-01-31 09:55:52,647 DEBUG chr16: Fitting background model for 19 segments 2025-01-31 09:55:52,710 DEBUG Processing 174/531 atomic regions from SNP 52073 to 52674 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,714 DEBUG Processing 563/596 atomic regions from SNP 168722 to 169322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,908 DEBUG Processing 564/596 atomic regions from SNP 169022 to 169622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,920 DEBUG Processing 175/531 atomic regions from SNP 52374 to 52975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,096 DEBUG Processing 176/531 atomic regions from SNP 52675 to 53276 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,128 DEBUG Processing 565/596 atomic regions from SNP 169322 to 169922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,287 DEBUG Processing 177/531 atomic regions from SNP 52976 to 53577 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,357 DEBUG Processing 566/596 atomic regions from SNP 169622 to 170222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,498 DEBUG Processing 178/531 atomic regions from SNP 53277 to 53878 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,582 DEBUG Processing 567/596 atomic regions from SNP 169922 to 170522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,701 DEBUG Processing 179/531 atomic regions from SNP 53578 to 54179 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,808 DEBUG Processing 568/596 atomic regions from SNP 170222 to 170822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,919 DEBUG Processing 180/531 atomic regions from SNP 53879 to 54480 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,030 DEBUG Processing 569/596 atomic regions from SNP 170522 to 171122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,141 DEBUG Processing 181/531 atomic regions from SNP 54180 to 54781 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,257 DEBUG Processing 570/596 atomic regions from SNP 170822 to 171422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,363 DEBUG Processing 182/531 atomic regions from SNP 54481 to 55082 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,546 DEBUG Processing 571/596 atomic regions from SNP 171122 to 171722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,655 DEBUG Processing 183/531 atomic regions from SNP 54782 to 55383 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,778 DEBUG Processing 572/596 atomic regions from SNP 171422 to 172022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,882 DEBUG Processing 184/531 atomic regions from SNP 55083 to 55684 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,030 DEBUG Processing 573/596 atomic regions from SNP 171722 to 172322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,138 DEBUG Processing 185/531 atomic regions from SNP 55384 to 55985 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,251 DEBUG Processing 574/596 atomic regions from SNP 172022 to 172622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,369 DEBUG Processing 186/531 atomic regions from SNP 55685 to 56286 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,537 DEBUG Processing 575/596 atomic regions from SNP 172322 to 172922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,560 DEBUG Processing 187/531 atomic regions from SNP 55986 to 56587 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,795 DEBUG Processing 188/531 atomic regions from SNP 56287 to 56888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,812 DEBUG Processing 576/596 atomic regions from SNP 172622 to 173222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,996 DEBUG Processing 189/531 atomic regions from SNP 56588 to 57189 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,057 DEBUG Processing 577/596 atomic regions from SNP 172922 to 173522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,206 DEBUG Processing 190/531 atomic regions from SNP 56889 to 57490 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,285 DEBUG Processing 578/596 atomic regions from SNP 173222 to 173822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,390 DEBUG Processing 191/531 atomic regions from SNP 57190 to 57791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,495 DEBUG Processing 579/596 atomic regions from SNP 173522 to 174122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,570 DEBUG Processing 192/531 atomic regions from SNP 57491 to 58092 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,688 DEBUG Processing 580/596 atomic regions from SNP 173822 to 174422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,753 DEBUG Processing 193/531 atomic regions from SNP 57792 to 58393 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,895 DEBUG Processing 581/596 atomic regions from SNP 174122 to 174722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,934 DEBUG Processing 194/531 atomic regions from SNP 58093 to 58694 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,119 DEBUG Processing 195/531 atomic regions from SNP 58394 to 58995 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,125 DEBUG Processing 582/596 atomic regions from SNP 174422 to 175022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,328 DEBUG Processing 196/531 atomic regions from SNP 58695 to 59296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,349 DEBUG Processing 583/596 atomic regions from SNP 174722 to 175322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,517 DEBUG Processing 197/531 atomic regions from SNP 58996 to 59597 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,550 DEBUG Processing 584/596 atomic regions from SNP 175022 to 175622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,699 DEBUG Processing 198/531 atomic regions from SNP 59297 to 59898 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,746 DEBUG Processing 585/596 atomic regions from SNP 175322 to 175922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,880 DEBUG Processing 199/531 atomic regions from SNP 59598 to 60199 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,958 DEBUG Processing 586/596 atomic regions from SNP 175622 to 176222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,037 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:55:58,043 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:55:58,060 DEBUG Processing 200/531 atomic regions from SNP 59899 to 60500 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,187 DEBUG Processing 587/596 atomic regions from SNP 175922 to 176522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,241 DEBUG Processing 201/531 atomic regions from SNP 60200 to 60801 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,414 DEBUG Processing 588/596 atomic regions from SNP 176222 to 176822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,424 DEBUG Processing 202/531 atomic regions from SNP 60501 to 61102 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,608 DEBUG Processing 203/531 atomic regions from SNP 60802 to 61403 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,655 DEBUG Processing 589/596 atomic regions from SNP 176522 to 177122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,789 DEBUG Processing 204/531 atomic regions from SNP 61103 to 61704 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,882 DEBUG Processing 590/596 atomic regions from SNP 176822 to 177422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,970 DEBUG Processing 205/531 atomic regions from SNP 61404 to 62005 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,099 DEBUG Processing 591/596 atomic regions from SNP 177122 to 177722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,151 DEBUG Processing 206/531 atomic regions from SNP 61705 to 62306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,292 DEBUG Processing 592/596 atomic regions from SNP 177422 to 178022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,332 DEBUG Processing 207/531 atomic regions from SNP 62006 to 62607 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,497 DEBUG Processing 593/596 atomic regions from SNP 177722 to 178322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,508 DEBUG Processing 208/531 atomic regions from SNP 62307 to 62908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,692 DEBUG Processing 209/531 atomic regions from SNP 62608 to 63209 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,728 DEBUG Processing 594/596 atomic regions from SNP 178022 to 178622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,781 DEBUG chrY total SNP count: 109 2025-01-31 09:55:59,781 DEBUG chrY length: 91744698 2025-01-31 09:55:59,781 DEBUG ----------------------------------------- 2025-01-31 09:55:59,781 INFO Processing SNPs in chrY 2025-01-31 09:55:59,782 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 1), (1, 12), (12, 21), (21, 29), (29, 35), (35, 43), (43, 56), (56, 62), (62, 63), (63, 64), (64, 65), (65, 66), (66, 109)] 2025-01-31 09:55:59,783 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [1, 11, 9, 8, 6, 8, 13, 6, 1, 1, 1, 1, 43] SNP IDs counts: [1, 11, 9, 8, 6, 8, 13, 6, 1, 1, 1, 1, 43] Critical gap: 13162bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.69Mbp], 0.69Mbp[0.15Mbp], 0.85Mbp[1.03Mbp], 1.89Mbp[0.87Mbp], 2.76Mbp[1.39Mbp], 4.15Mbp[5.64Mbp], 9.79Mbp[0.02Mbp], 9.82Mbp[0.89Mbp], 10.71Mbp[9.95Mbp], 20.66Mbp[2.06Mbp], 22.72Mbp[17.30Mbp], 40.02Mbp[46.72Mbp], 86.75Mbp[3.97Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:55:59,783 DEBUG chrY time: 0.0015275540063157678 s 2025-01-31 09:55:59,878 DEBUG Processing 210/531 atomic regions from SNP 62909 to 63510 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,957 DEBUG Processing 595/596 atomic regions from SNP 178322 to 178922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,061 DEBUG Processing 211/531 atomic regions from SNP 63210 to 63811 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,164 DEBUG Processing 596/596 atomic regions from SNP 178622 to 179222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,243 DEBUG Processing 212/531 atomic regions from SNP 63511 to 64112 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,286 DEBUG Unique SNPs positions in subchromosome 1: 179223 2025-01-31 09:56:00,427 DEBUG Processing 213/531 atomic regions from SNP 63812 to 64413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,613 DEBUG Processing 214/531 atomic regions from SNP 64113 to 64713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,797 DEBUG Processing 215/531 atomic regions from SNP 64413 to 65013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,977 DEBUG Processing 216/531 atomic regions from SNP 64713 to 65313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,158 DEBUG Processing 217/531 atomic regions from SNP 65013 to 65613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,337 DEBUG Processing 218/531 atomic regions from SNP 65313 to 65913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,521 DEBUG Processing 219/531 atomic regions from SNP 65613 to 66213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,674 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:56:01,675 DEBUG chr18: Signal quantile: 0.992. signal threshold: 10. Best RMSEA: 0.020 2025-01-31 09:56:01,702 DEBUG Processing 220/531 atomic regions from SNP 65913 to 66513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,742 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:56:01,885 DEBUG Processing 221/531 atomic regions from SNP 66213 to 66813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,071 DEBUG Processing 222/531 atomic regions from SNP 66513 to 67113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,257 DEBUG Processing 223/531 atomic regions from SNP 66813 to 67413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,442 DEBUG Processing 224/531 atomic regions from SNP 67113 to 67713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,627 DEBUG Processing 225/531 atomic regions from SNP 67413 to 68013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,811 DEBUG Processing 226/531 atomic regions from SNP 67713 to 68313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,991 DEBUG Processing 227/531 atomic regions from SNP 68013 to 68613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,175 DEBUG Processing 228/531 atomic regions from SNP 68313 to 68913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,217 DEBUG chr18 total SNP count: 155772 2025-01-31 09:56:03,217 DEBUG chr18 length: 90702639 2025-01-31 09:56:03,217 DEBUG ----------------------------------------- 2025-01-31 09:56:03,217 INFO Processing SNPs in chr18 2025-01-31 09:56:03,357 DEBUG Processing 229/531 atomic regions from SNP 68613 to 69213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,370 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 155772)] 2025-01-31 09:56:03,474 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:03,546 DEBUG Processing 230/531 atomic regions from SNP 68913 to 69513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,729 DEBUG Processing 231/531 atomic regions from SNP 69213 to 69813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,908 DEBUG Processing 232/531 atomic regions from SNP 69513 to 70113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,088 DEBUG Processing 233/531 atomic regions from SNP 69813 to 70413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,268 DEBUG Processing 234/531 atomic regions from SNP 70113 to 70713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,469 DEBUG Processing 235/531 atomic regions from SNP 70413 to 71013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,655 DEBUG Processing 236/531 atomic regions from SNP 70713 to 71313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,838 DEBUG Processing 237/531 atomic regions from SNP 71013 to 71613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,044 DEBUG Processing 238/531 atomic regions from SNP 71313 to 71913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,256 DEBUG Processing 239/531 atomic regions from SNP 71613 to 72213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,473 DEBUG Processing 240/531 atomic regions from SNP 71913 to 72513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,723 DEBUG Processing 241/531 atomic regions from SNP 72213 to 72813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,931 DEBUG Processing 242/531 atomic regions from SNP 72513 to 73113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,144 DEBUG Processing 243/531 atomic regions from SNP 72813 to 73413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,337 DEBUG Processing 244/531 atomic regions from SNP 73113 to 73713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,464 DEBUG Subchromosome time: 153.52022636402398, subchromosome SNPs: 179223 2025-01-31 09:56:06,465 DEBUG Estimated BADs: [0.80, 1.60, 0.53, 3.19, 0.80, 1.60, 4.79, 1.60, 7.98, 1.60, 0.53, 0.80, 3.19, 1.60, 0.53, 1.60, 6.38, 3.19, 1.60, 6.38, 1.60, 9.57, 4.79, 1.60] SNP counts: [3371, 14798, 23733, 313, 6589, 8481, 1434, 2515, 488, 11394, 11403, 10656, 2245, 18295, 6012, 5179, 12606, 6339, 5513, 989, 16857, 1105, 8085, 823] SNP IDs counts: [3371, 14798, 23733, 313, 6589, 8481, 1434, 2515, 488, 11394, 11403, 10656, 2245, 18295, 6012, 5179, 12606, 6339, 5513, 989, 16857, 1105, 8085, 823] Critical gap: 547267bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.11Mbp, 13.43Mbp, 27.30Mbp, 27.48Mbp, 31.24Mbp, 36.13Mbp, 36.90Mbp, 38.27Mbp, 38.53Mbp, 45.08Mbp, 51.73Mbp, 57.80Mbp, 58.99Mbp, 69.39Mbp, 72.79Mbp, 75.64Mbp, 82.38Mbp, 85.80Mbp, 88.73Mbp, 89.25Mbp, 98.50Mbp, 99.08Mbp, 103.37Mbp, 104.04Mbp] 2025-01-31 09:56:06,465 DEBUG chr15 time: 153.52065875509288 s 2025-01-31 09:56:06,526 DEBUG Processing 245/531 atomic regions from SNP 73413 to 74013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,567 DEBUG chr15: Fitting background model for 24 segments 2025-01-31 09:56:06,733 DEBUG Processing 246/531 atomic regions from SNP 73713 to 74313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,944 DEBUG Processing 247/531 atomic regions from SNP 74013 to 74613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,141 DEBUG Processing 248/531 atomic regions from SNP 74313 to 74913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,320 DEBUG Processing 249/531 atomic regions from SNP 74613 to 75213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,503 DEBUG Processing 250/531 atomic regions from SNP 74913 to 75513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,704 DEBUG Processing 251/531 atomic regions from SNP 75213 to 75813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,918 DEBUG Processing 252/531 atomic regions from SNP 75513 to 76113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,133 DEBUG Processing 253/531 atomic regions from SNP 75813 to 76413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,339 DEBUG Processing 254/531 atomic regions from SNP 76113 to 76713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,545 DEBUG Processing 255/531 atomic regions from SNP 76413 to 77013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,728 DEBUG Processing 256/531 atomic regions from SNP 76713 to 77313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,918 DEBUG Processing 257/531 atomic regions from SNP 77013 to 77613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,098 DEBUG Processing 258/531 atomic regions from SNP 77313 to 77913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,285 DEBUG Processing 259/531 atomic regions from SNP 77613 to 78213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,469 DEBUG Processing 260/531 atomic regions from SNP 77913 to 78513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,649 DEBUG Processing 261/531 atomic regions from SNP 78213 to 78813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,706 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:56:09,708 DEBUG chr19: Signal quantile: 0.986. signal threshold: 12. Best RMSEA: 0.012 2025-01-31 09:56:09,836 DEBUG Processing 262/531 atomic regions from SNP 78513 to 79113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,024 DEBUG Processing 263/531 atomic regions from SNP 78813 to 79413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,215 DEBUG Processing 264/531 atomic regions from SNP 79113 to 79713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,403 DEBUG Processing 265/531 atomic regions from SNP 79413 to 80013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,584 DEBUG Processing 266/531 atomic regions from SNP 79713 to 80313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,766 DEBUG Processing 267/531 atomic regions from SNP 80013 to 80613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,830 DEBUG chr19 total SNP count: 104440 2025-01-31 09:56:10,831 DEBUG chr19 length: 61431566 2025-01-31 09:56:10,831 DEBUG ----------------------------------------- 2025-01-31 09:56:10,831 INFO Processing SNPs in chr19 2025-01-31 09:56:10,930 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 104440)] 2025-01-31 09:56:10,948 DEBUG Processing 268/531 atomic regions from SNP 80313 to 80913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,999 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:11,134 DEBUG Processing 269/531 atomic regions from SNP 80613 to 81213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,323 DEBUG Processing 270/531 atomic regions from SNP 80913 to 81513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,510 DEBUG Processing 271/531 atomic regions from SNP 81213 to 81813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,694 DEBUG Processing 272/531 atomic regions from SNP 81513 to 82113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,878 DEBUG Processing 273/531 atomic regions from SNP 81813 to 82413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,058 DEBUG Processing 274/531 atomic regions from SNP 82113 to 82713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,241 DEBUG Processing 275/531 atomic regions from SNP 82413 to 83013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,424 DEBUG Processing 276/531 atomic regions from SNP 82713 to 83313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,610 DEBUG Processing 277/531 atomic regions from SNP 83013 to 83613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,798 DEBUG Processing 278/531 atomic regions from SNP 83313 to 83913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,979 DEBUG Processing 279/531 atomic regions from SNP 83613 to 84213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,154 DEBUG Processing 280/531 atomic regions from SNP 83913 to 84513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,328 DEBUG Processing 281/531 atomic regions from SNP 84213 to 84813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,503 DEBUG Processing 282/531 atomic regions from SNP 84513 to 85113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,683 DEBUG Processing 283/531 atomic regions from SNP 84813 to 85413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,867 DEBUG Processing 284/531 atomic regions from SNP 85113 to 85713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,048 DEBUG Processing 285/531 atomic regions from SNP 85413 to 86013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,226 DEBUG Processing 286/531 atomic regions from SNP 85713 to 86313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,405 DEBUG Processing 287/531 atomic regions from SNP 86013 to 86613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,593 DEBUG Processing 288/531 atomic regions from SNP 86313 to 86913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,776 DEBUG Processing 289/531 atomic regions from SNP 86613 to 87213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,958 DEBUG Processing 290/531 atomic regions from SNP 86913 to 87513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,135 DEBUG Processing 291/531 atomic regions from SNP 87213 to 87813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,311 DEBUG Processing 292/531 atomic regions from SNP 87513 to 88113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,486 DEBUG Processing 293/531 atomic regions from SNP 87813 to 88413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,664 DEBUG Processing 294/531 atomic regions from SNP 88113 to 88713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,844 DEBUG Processing 295/531 atomic regions from SNP 88413 to 89013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,027 DEBUG Processing 296/531 atomic regions from SNP 88713 to 89313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,210 DEBUG Processing 297/531 atomic regions from SNP 89013 to 89613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,388 DEBUG Processing 298/531 atomic regions from SNP 89313 to 89913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,562 DEBUG Processing 299/531 atomic regions from SNP 89613 to 90213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,739 DEBUG Processing 300/531 atomic regions from SNP 89913 to 90513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,944 DEBUG Processing 301/531 atomic regions from SNP 90213 to 90813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,153 DEBUG Processing 302/531 atomic regions from SNP 90513 to 91113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,361 DEBUG Processing 303/531 atomic regions from SNP 90813 to 91413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,556 DEBUG Processing 304/531 atomic regions from SNP 91113 to 91713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,760 DEBUG Processing 305/531 atomic regions from SNP 91413 to 92013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,972 DEBUG Processing 306/531 atomic regions from SNP 91713 to 92313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,182 DEBUG Processing 307/531 atomic regions from SNP 92013 to 92613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,391 DEBUG Processing 308/531 atomic regions from SNP 92313 to 92913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,594 DEBUG Processing 309/531 atomic regions from SNP 92613 to 93213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,785 DEBUG Processing 310/531 atomic regions from SNP 92913 to 93513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,963 DEBUG Processing 311/531 atomic regions from SNP 93213 to 93813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,141 DEBUG Processing 312/531 atomic regions from SNP 93513 to 94113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,317 DEBUG Processing 313/531 atomic regions from SNP 93813 to 94413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,494 DEBUG Processing 314/531 atomic regions from SNP 94113 to 94713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,670 DEBUG Processing 315/531 atomic regions from SNP 94413 to 95013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,848 DEBUG Processing 316/531 atomic regions from SNP 94713 to 95313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,023 DEBUG Processing 317/531 atomic regions from SNP 95013 to 95613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,198 DEBUG Processing 318/531 atomic regions from SNP 95313 to 95913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,375 DEBUG Processing 319/531 atomic regions from SNP 95613 to 96213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,555 DEBUG Processing 320/531 atomic regions from SNP 95913 to 96513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,725 DEBUG Processing 321/531 atomic regions from SNP 96213 to 96813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,893 DEBUG Processing 322/531 atomic regions from SNP 96513 to 97113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,064 DEBUG Processing 323/531 atomic regions from SNP 96813 to 97413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,241 DEBUG Processing 324/531 atomic regions from SNP 97113 to 97713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,415 DEBUG Processing 325/531 atomic regions from SNP 97413 to 98013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,586 DEBUG Processing 326/531 atomic regions from SNP 97713 to 98313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,759 DEBUG Processing 327/531 atomic regions from SNP 98013 to 98613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,951 DEBUG Processing 328/531 atomic regions from SNP 98313 to 98913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,125 DEBUG Processing 329/531 atomic regions from SNP 98613 to 99213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,159 DEBUG Segmenting atomic regions: 2025-01-31 09:56:22,225 DEBUG Processing 1/518 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:22,302 DEBUG Processing 330/531 atomic regions from SNP 98913 to 99513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,396 DEBUG Processing 2/518 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:22,484 DEBUG Processing 331/531 atomic regions from SNP 99213 to 99813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,564 DEBUG Processing 3/518 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:22,665 DEBUG Processing 332/531 atomic regions from SNP 99513 to 100113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,733 DEBUG Processing 4/518 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:22,838 DEBUG Processing 333/531 atomic regions from SNP 99813 to 100413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,902 DEBUG Processing 5/518 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,008 DEBUG Processing 334/531 atomic regions from SNP 100113 to 100713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,070 DEBUG Processing 6/518 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,177 DEBUG Processing 335/531 atomic regions from SNP 100413 to 101013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,238 DEBUG Processing 7/518 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,259 DEBUG Segmenting atomic regions: 2025-01-31 09:56:23,304 DEBUG Processing 1/347 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:23,350 DEBUG Processing 336/531 atomic regions from SNP 100713 to 101313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,407 DEBUG Processing 8/518 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,484 DEBUG Processing 2/347 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:23,530 DEBUG Processing 337/531 atomic regions from SNP 101013 to 101613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,576 DEBUG Processing 9/518 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,655 DEBUG Processing 3/347 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:23,711 DEBUG Processing 338/531 atomic regions from SNP 101313 to 101913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,751 DEBUG Processing 10/518 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,830 DEBUG Processing 4/347 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:23,887 DEBUG Processing 339/531 atomic regions from SNP 101613 to 102213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,923 DEBUG Processing 11/518 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,003 DEBUG Processing 5/347 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:24,065 DEBUG Processing 340/531 atomic regions from SNP 101913 to 102513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,108 DEBUG Processing 12/518 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,192 DEBUG Processing 6/347 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:24,245 DEBUG Processing 341/531 atomic regions from SNP 102213 to 102813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,283 DEBUG Processing 13/518 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,386 DEBUG Processing 7/347 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:24,433 DEBUG Processing 342/531 atomic regions from SNP 102513 to 103113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,458 DEBUG Processing 14/518 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,574 DEBUG Processing 8/347 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:24,617 DEBUG Processing 343/531 atomic regions from SNP 102813 to 103413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,634 DEBUG Processing 15/518 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,750 DEBUG Processing 9/347 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:24,798 DEBUG Processing 344/531 atomic regions from SNP 103113 to 103713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,807 DEBUG Processing 16/518 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,929 DEBUG Processing 10/347 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:24,976 DEBUG Processing 17/518 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,977 DEBUG Processing 345/531 atomic regions from SNP 103413 to 104013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,107 DEBUG Processing 11/347 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:25,145 DEBUG Processing 18/518 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,159 DEBUG Processing 346/531 atomic regions from SNP 103713 to 104313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,287 DEBUG Processing 12/347 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:25,314 DEBUG Processing 19/518 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,341 DEBUG Processing 347/531 atomic regions from SNP 104013 to 104613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,479 DEBUG Processing 13/347 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:25,486 DEBUG Processing 20/518 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,527 DEBUG Processing 348/531 atomic regions from SNP 104313 to 104913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,656 DEBUG Processing 21/518 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,657 DEBUG Processing 14/347 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:25,710 DEBUG Processing 349/531 atomic regions from SNP 104613 to 105213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,826 DEBUG Processing 22/518 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,840 DEBUG Processing 15/347 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:25,892 DEBUG Processing 350/531 atomic regions from SNP 104913 to 105513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,996 DEBUG Processing 23/518 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,020 DEBUG Processing 16/347 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:26,067 DEBUG Processing 351/531 atomic regions from SNP 105213 to 105813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,168 DEBUG Processing 24/518 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,211 DEBUG Processing 17/347 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:26,242 DEBUG Processing 352/531 atomic regions from SNP 105513 to 106113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,342 DEBUG Processing 25/518 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,406 DEBUG Processing 18/347 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:26,423 DEBUG Processing 353/531 atomic regions from SNP 105813 to 106413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,512 DEBUG Processing 26/518 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,597 DEBUG Processing 19/347 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:26,606 DEBUG Processing 354/531 atomic regions from SNP 106113 to 106713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,683 DEBUG Processing 27/518 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,787 DEBUG Processing 355/531 atomic regions from SNP 106413 to 107013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,790 DEBUG Processing 20/347 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:26,855 DEBUG Processing 28/518 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,965 DEBUG Processing 356/531 atomic regions from SNP 106713 to 107313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,979 DEBUG Processing 21/347 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:27,025 DEBUG Processing 29/518 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,143 DEBUG Processing 357/531 atomic regions from SNP 107013 to 107613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,147 DEBUG Processing 22/347 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:27,195 DEBUG Processing 30/518 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,310 DEBUG Processing 23/347 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:27,323 DEBUG Processing 358/531 atomic regions from SNP 107313 to 107913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,369 DEBUG Processing 31/518 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,499 DEBUG Processing 24/347 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:27,518 DEBUG Processing 359/531 atomic regions from SNP 107613 to 108213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,540 DEBUG Processing 32/518 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,693 DEBUG Processing 25/347 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:27,714 DEBUG Processing 33/518 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,717 DEBUG Processing 360/531 atomic regions from SNP 107913 to 108513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,886 DEBUG Processing 26/347 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:27,888 DEBUG Processing 34/518 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,922 DEBUG Processing 361/531 atomic regions from SNP 108213 to 108813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,062 DEBUG Processing 35/518 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,067 DEBUG Processing 27/347 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,108 DEBUG Processing 362/531 atomic regions from SNP 108513 to 109113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,241 DEBUG Processing 36/518 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,242 DEBUG Processing 28/347 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,289 DEBUG Processing 363/531 atomic regions from SNP 108813 to 109413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,394 DEBUG Processing 29/347 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,419 DEBUG Processing 37/518 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,470 DEBUG Processing 364/531 atomic regions from SNP 109113 to 109713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,562 DEBUG Processing 30/347 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,598 DEBUG Processing 38/518 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,650 DEBUG Processing 365/531 atomic regions from SNP 109413 to 110013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,717 DEBUG Processing 31/347 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,776 DEBUG Processing 39/518 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,833 DEBUG Processing 366/531 atomic regions from SNP 109713 to 110313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,865 DEBUG Processing 32/347 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,951 DEBUG Processing 40/518 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,020 DEBUG Processing 367/531 atomic regions from SNP 110013 to 110613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,040 DEBUG Processing 33/347 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,128 DEBUG Processing 41/518 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,207 DEBUG Processing 368/531 atomic regions from SNP 110313 to 110913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,235 DEBUG Processing 34/347 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,302 DEBUG Processing 42/518 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,390 DEBUG Processing 369/531 atomic regions from SNP 110613 to 111213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,431 DEBUG Processing 35/347 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,478 DEBUG Processing 43/518 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,577 DEBUG Processing 370/531 atomic regions from SNP 110913 to 111513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,615 DEBUG Processing 36/347 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,657 DEBUG Processing 44/518 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,761 DEBUG Processing 371/531 atomic regions from SNP 111213 to 111813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,776 DEBUG Processing 37/347 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,831 DEBUG Processing 45/518 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,938 DEBUG Processing 38/347 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,943 DEBUG Processing 372/531 atomic regions from SNP 111513 to 112113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,012 DEBUG Processing 46/518 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,116 DEBUG Processing 39/347 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,130 DEBUG Processing 373/531 atomic regions from SNP 111813 to 112413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,187 DEBUG Processing 47/518 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,308 DEBUG Processing 40/347 atomic regions from SNP 11739 to 12339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,318 DEBUG Processing 374/531 atomic regions from SNP 112113 to 112713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,361 DEBUG Processing 48/518 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,499 DEBUG Processing 41/347 atomic regions from SNP 12039 to 12639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,507 DEBUG Processing 375/531 atomic regions from SNP 112413 to 113013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,540 DEBUG Processing 49/518 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,680 DEBUG Processing 42/347 atomic regions from SNP 12339 to 12939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,689 DEBUG Processing 376/531 atomic regions from SNP 112713 to 113313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,715 DEBUG Processing 50/518 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,855 DEBUG Processing 43/347 atomic regions from SNP 12639 to 13239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,869 DEBUG Processing 377/531 atomic regions from SNP 113013 to 113613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,892 DEBUG Processing 51/518 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,036 DEBUG Processing 44/347 atomic regions from SNP 12939 to 13539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,051 DEBUG Processing 378/531 atomic regions from SNP 113313 to 113913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,068 DEBUG Processing 52/518 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,201 DEBUG Processing 45/347 atomic regions from SNP 13239 to 13839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,233 DEBUG Processing 379/531 atomic regions from SNP 113613 to 114213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,242 DEBUG Processing 53/518 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,359 DEBUG Processing 46/347 atomic regions from SNP 13539 to 14139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,415 DEBUG Processing 380/531 atomic regions from SNP 113913 to 114513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,415 DEBUG Processing 54/518 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,521 DEBUG Processing 47/347 atomic regions from SNP 13839 to 14439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,595 DEBUG Processing 55/518 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,598 DEBUG Processing 381/531 atomic regions from SNP 114213 to 114813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,686 DEBUG Processing 48/347 atomic regions from SNP 14139 to 14739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,777 DEBUG Processing 56/518 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,787 DEBUG Processing 382/531 atomic regions from SNP 114513 to 115113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,852 DEBUG Processing 49/347 atomic regions from SNP 14439 to 15039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,956 DEBUG Processing 57/518 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,971 DEBUG Processing 383/531 atomic regions from SNP 114813 to 115413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,013 DEBUG Processing 50/347 atomic regions from SNP 14739 to 15339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,134 DEBUG Processing 58/518 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,157 DEBUG Processing 384/531 atomic regions from SNP 115113 to 115713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,175 DEBUG Processing 51/347 atomic regions from SNP 15039 to 15639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,308 DEBUG Processing 59/518 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,333 DEBUG Processing 385/531 atomic regions from SNP 115413 to 116013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,362 DEBUG Processing 52/347 atomic regions from SNP 15339 to 15939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,480 DEBUG Processing 60/518 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,510 DEBUG Processing 386/531 atomic regions from SNP 115713 to 116313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,516 DEBUG Processing 53/347 atomic regions from SNP 15639 to 16239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,654 DEBUG Processing 61/518 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,671 DEBUG Processing 54/347 atomic regions from SNP 15939 to 16539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,688 DEBUG Processing 387/531 atomic regions from SNP 116013 to 116613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,821 DEBUG Processing 55/347 atomic regions from SNP 16239 to 16839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,825 DEBUG Processing 62/518 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,862 DEBUG Processing 388/531 atomic regions from SNP 116313 to 116913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,971 DEBUG Processing 56/347 atomic regions from SNP 16539 to 17139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,996 DEBUG Processing 63/518 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,035 DEBUG Processing 389/531 atomic regions from SNP 116613 to 117213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,123 DEBUG Processing 57/347 atomic regions from SNP 16839 to 17439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,165 DEBUG Processing 64/518 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,218 DEBUG Processing 390/531 atomic regions from SNP 116913 to 117513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,276 DEBUG Processing 58/347 atomic regions from SNP 17139 to 17739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,338 DEBUG Processing 65/518 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,408 DEBUG Processing 391/531 atomic regions from SNP 117213 to 117813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,432 DEBUG Processing 59/347 atomic regions from SNP 17439 to 18039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,513 DEBUG Processing 66/518 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,582 DEBUG Processing 60/347 atomic regions from SNP 17739 to 18339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,605 DEBUG Processing 392/531 atomic regions from SNP 117513 to 118113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,687 DEBUG Processing 67/518 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,736 DEBUG Processing 61/347 atomic regions from SNP 18039 to 18639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,781 DEBUG Processing 393/531 atomic regions from SNP 117813 to 118413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,862 DEBUG Processing 68/518 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,893 DEBUG Processing 62/347 atomic regions from SNP 18339 to 18939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,973 DEBUG Processing 394/531 atomic regions from SNP 118113 to 118713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,031 DEBUG Processing 69/518 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,042 DEBUG Processing 63/347 atomic regions from SNP 18639 to 19239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,169 DEBUG Processing 395/531 atomic regions from SNP 118413 to 119013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,205 DEBUG Processing 64/347 atomic regions from SNP 18939 to 19539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,219 DEBUG Processing 70/518 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,357 DEBUG Processing 396/531 atomic regions from SNP 118713 to 119313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,369 DEBUG Processing 65/347 atomic regions from SNP 19239 to 19839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,399 DEBUG Processing 71/518 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,525 DEBUG Processing 66/347 atomic regions from SNP 19539 to 20139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,535 DEBUG Processing 397/531 atomic regions from SNP 119013 to 119613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,571 DEBUG Processing 72/518 atomic regions from SNP 21371 to 21971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,680 DEBUG Processing 67/347 atomic regions from SNP 19839 to 20439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,712 DEBUG Processing 398/531 atomic regions from SNP 119313 to 119913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,744 DEBUG Processing 73/518 atomic regions from SNP 21671 to 22271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,838 DEBUG Processing 68/347 atomic regions from SNP 20139 to 20739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,895 DEBUG Processing 399/531 atomic regions from SNP 119613 to 120213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,926 DEBUG Processing 74/518 atomic regions from SNP 21971 to 22571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,998 DEBUG Processing 69/347 atomic regions from SNP 20439 to 21039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,086 DEBUG Processing 400/531 atomic regions from SNP 119913 to 120513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,120 DEBUG Processing 75/518 atomic regions from SNP 22271 to 22871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,161 DEBUG Processing 70/347 atomic regions from SNP 20739 to 21339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,268 DEBUG Processing 401/531 atomic regions from SNP 120213 to 120813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,301 DEBUG Processing 76/518 atomic regions from SNP 22571 to 23171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,319 DEBUG Processing 71/347 atomic regions from SNP 21039 to 21639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,449 DEBUG Processing 402/531 atomic regions from SNP 120513 to 121113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,480 DEBUG Processing 72/347 atomic regions from SNP 21339 to 21939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,487 DEBUG Processing 77/518 atomic regions from SNP 22871 to 23471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,629 DEBUG Processing 403/531 atomic regions from SNP 120813 to 121413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,636 DEBUG Processing 73/347 atomic regions from SNP 21639 to 22239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,668 DEBUG Processing 78/518 atomic regions from SNP 23171 to 23771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,799 DEBUG Processing 74/347 atomic regions from SNP 21939 to 22539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,816 DEBUG Processing 404/531 atomic regions from SNP 121113 to 121713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,849 DEBUG Processing 79/518 atomic regions from SNP 23471 to 24071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,962 DEBUG Processing 75/347 atomic regions from SNP 22239 to 22839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,997 DEBUG Processing 405/531 atomic regions from SNP 121413 to 122013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,023 DEBUG Processing 80/518 atomic regions from SNP 23771 to 24371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,122 DEBUG Processing 76/347 atomic regions from SNP 22539 to 23139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,176 DEBUG Processing 406/531 atomic regions from SNP 121713 to 122313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,196 DEBUG Processing 81/518 atomic regions from SNP 24071 to 24671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,279 DEBUG Processing 77/347 atomic regions from SNP 22839 to 23439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,355 DEBUG Processing 407/531 atomic regions from SNP 122013 to 122613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,374 DEBUG Processing 82/518 atomic regions from SNP 24371 to 24971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,434 DEBUG Processing 78/347 atomic regions from SNP 23139 to 23739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,531 DEBUG Processing 408/531 atomic regions from SNP 122313 to 122913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,549 DEBUG Processing 83/518 atomic regions from SNP 24671 to 25271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,585 DEBUG Processing 79/347 atomic regions from SNP 23439 to 24039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,711 DEBUG Processing 409/531 atomic regions from SNP 122613 to 123213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,729 DEBUG Processing 84/518 atomic regions from SNP 24971 to 25571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,737 DEBUG Processing 80/347 atomic regions from SNP 23739 to 24339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,891 DEBUG Processing 410/531 atomic regions from SNP 122913 to 123513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,898 DEBUG Processing 81/347 atomic regions from SNP 24039 to 24639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,908 DEBUG Processing 85/518 atomic regions from SNP 25271 to 25871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,060 DEBUG Processing 82/347 atomic regions from SNP 24339 to 24939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,086 DEBUG Processing 411/531 atomic regions from SNP 123213 to 123813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,096 DEBUG Processing 86/518 atomic regions from SNP 25571 to 26171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,239 DEBUG Processing 83/347 atomic regions from SNP 24639 to 25239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,276 DEBUG Processing 412/531 atomic regions from SNP 123513 to 124113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,278 DEBUG Processing 87/518 atomic regions from SNP 25871 to 26471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,406 DEBUG Processing 84/347 atomic regions from SNP 24939 to 25539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,460 DEBUG Processing 88/518 atomic regions from SNP 26171 to 26771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,463 DEBUG Processing 413/531 atomic regions from SNP 123813 to 124413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,562 DEBUG Processing 85/347 atomic regions from SNP 25239 to 25839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,641 DEBUG Processing 414/531 atomic regions from SNP 124113 to 124713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,642 DEBUG Processing 89/518 atomic regions from SNP 26471 to 27071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,724 DEBUG Processing 86/347 atomic regions from SNP 25539 to 26139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,821 DEBUG Processing 415/531 atomic regions from SNP 124413 to 125013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,825 DEBUG Processing 90/518 atomic regions from SNP 26771 to 27371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,886 DEBUG Processing 87/347 atomic regions from SNP 25839 to 26439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,005 DEBUG Processing 91/518 atomic regions from SNP 27071 to 27671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,008 DEBUG Processing 416/531 atomic regions from SNP 124713 to 125313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,045 DEBUG Processing 88/347 atomic regions from SNP 26139 to 26739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,196 DEBUG Processing 92/518 atomic regions from SNP 27371 to 27971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,205 DEBUG Processing 417/531 atomic regions from SNP 125013 to 125613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,217 DEBUG Processing 89/347 atomic regions from SNP 26439 to 27039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,389 DEBUG Processing 93/518 atomic regions from SNP 27671 to 28271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,391 DEBUG Processing 90/347 atomic regions from SNP 26739 to 27339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,401 DEBUG Processing 418/531 atomic regions from SNP 125313 to 125913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,577 DEBUG Processing 91/347 atomic regions from SNP 27039 to 27639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,581 DEBUG Processing 94/518 atomic regions from SNP 27971 to 28571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,596 DEBUG Processing 419/531 atomic regions from SNP 125613 to 126213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,739 DEBUG Processing 92/347 atomic regions from SNP 27339 to 27939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,760 DEBUG Processing 95/518 atomic regions from SNP 28271 to 28871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,782 DEBUG Processing 420/531 atomic regions from SNP 125913 to 126513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,906 DEBUG Processing 93/347 atomic regions from SNP 27639 to 28239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,940 DEBUG Processing 96/518 atomic regions from SNP 28571 to 29171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,967 DEBUG Processing 421/531 atomic regions from SNP 126213 to 126813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,072 DEBUG Processing 94/347 atomic regions from SNP 27939 to 28539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,122 DEBUG Processing 97/518 atomic regions from SNP 28871 to 29471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,159 DEBUG Processing 422/531 atomic regions from SNP 126513 to 127113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,231 DEBUG Processing 95/347 atomic regions from SNP 28239 to 28839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,302 DEBUG Processing 98/518 atomic regions from SNP 29171 to 29771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,353 DEBUG Processing 423/531 atomic regions from SNP 126813 to 127413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,400 DEBUG Processing 96/347 atomic regions from SNP 28539 to 29139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,486 DEBUG Processing 99/518 atomic regions from SNP 29471 to 30071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,543 DEBUG Processing 424/531 atomic regions from SNP 127113 to 127713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,572 DEBUG Processing 97/347 atomic regions from SNP 28839 to 29439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,669 DEBUG Processing 100/518 atomic regions from SNP 29771 to 30371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,723 DEBUG Processing 425/531 atomic regions from SNP 127413 to 128013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,738 DEBUG Processing 98/347 atomic regions from SNP 29139 to 29739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,856 DEBUG Processing 101/518 atomic regions from SNP 30071 to 30671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,898 DEBUG Processing 99/347 atomic regions from SNP 29439 to 30039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,906 DEBUG Processing 426/531 atomic regions from SNP 127713 to 128313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,041 DEBUG Processing 102/518 atomic regions from SNP 30371 to 30971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,063 DEBUG Processing 100/347 atomic regions from SNP 29739 to 30339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,092 DEBUG Processing 427/531 atomic regions from SNP 128013 to 128613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,228 DEBUG Processing 101/347 atomic regions from SNP 30039 to 30639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,244 DEBUG Processing 103/518 atomic regions from SNP 30671 to 31271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,275 DEBUG Processing 428/531 atomic regions from SNP 128313 to 128913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,397 DEBUG Processing 102/347 atomic regions from SNP 30339 to 30939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,437 DEBUG Processing 104/518 atomic regions from SNP 30971 to 31571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,467 DEBUG Processing 429/531 atomic regions from SNP 128613 to 129213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,553 DEBUG Processing 103/347 atomic regions from SNP 30639 to 31239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,627 DEBUG Processing 105/518 atomic regions from SNP 31271 to 31871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,652 DEBUG Processing 430/531 atomic regions from SNP 128913 to 129513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,711 DEBUG Processing 104/347 atomic regions from SNP 30939 to 31539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,822 DEBUG Processing 106/518 atomic regions from SNP 31571 to 32171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,837 DEBUG Processing 431/531 atomic regions from SNP 129213 to 129813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,875 DEBUG Processing 105/347 atomic regions from SNP 31239 to 31839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,006 DEBUG Processing 107/518 atomic regions from SNP 31871 to 32471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,023 DEBUG Processing 432/531 atomic regions from SNP 129513 to 130113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,039 DEBUG Processing 106/347 atomic regions from SNP 31539 to 32139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,188 DEBUG Processing 108/518 atomic regions from SNP 32171 to 32771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,199 DEBUG Processing 107/347 atomic regions from SNP 31839 to 32439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,206 DEBUG Processing 433/531 atomic regions from SNP 129813 to 130413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,359 DEBUG Processing 108/347 atomic regions from SNP 32139 to 32739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,376 DEBUG Processing 109/518 atomic regions from SNP 32471 to 33071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,389 DEBUG Processing 434/531 atomic regions from SNP 130113 to 130713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,523 DEBUG Processing 109/347 atomic regions from SNP 32439 to 33039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,563 DEBUG Processing 110/518 atomic regions from SNP 32771 to 33371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,576 DEBUG Processing 435/531 atomic regions from SNP 130413 to 131013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,687 DEBUG Processing 110/347 atomic regions from SNP 32739 to 33339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,752 DEBUG Processing 111/518 atomic regions from SNP 33071 to 33671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,762 DEBUG Processing 436/531 atomic regions from SNP 130713 to 131313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,847 DEBUG Processing 111/347 atomic regions from SNP 33039 to 33639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,940 DEBUG Processing 112/518 atomic regions from SNP 33371 to 33971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,945 DEBUG Processing 437/531 atomic regions from SNP 131013 to 131613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,008 DEBUG Processing 112/347 atomic regions from SNP 33339 to 33939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,125 DEBUG Processing 438/531 atomic regions from SNP 131313 to 131913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,126 DEBUG Processing 113/518 atomic regions from SNP 33671 to 34271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,166 DEBUG Processing 113/347 atomic regions from SNP 33639 to 34239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,309 DEBUG Processing 439/531 atomic regions from SNP 131613 to 132213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,317 DEBUG Processing 114/518 atomic regions from SNP 33971 to 34571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,325 DEBUG Processing 114/347 atomic regions from SNP 33939 to 34539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,489 DEBUG Processing 115/347 atomic regions from SNP 34239 to 34839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,495 DEBUG Processing 440/531 atomic regions from SNP 131913 to 132513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,504 DEBUG Processing 115/518 atomic regions from SNP 34271 to 34871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,655 DEBUG Processing 116/347 atomic regions from SNP 34539 to 35139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,687 DEBUG Processing 441/531 atomic regions from SNP 132213 to 132813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,689 DEBUG Processing 116/518 atomic regions from SNP 34571 to 35171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,832 DEBUG Processing 117/347 atomic regions from SNP 34839 to 35439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,874 DEBUG Processing 442/531 atomic regions from SNP 132513 to 133113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,876 DEBUG Processing 117/518 atomic regions from SNP 34871 to 35471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,020 DEBUG Processing 118/347 atomic regions from SNP 35139 to 35739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,058 DEBUG Processing 443/531 atomic regions from SNP 132813 to 133413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,062 DEBUG Processing 118/518 atomic regions from SNP 35171 to 35771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,183 DEBUG Processing 119/347 atomic regions from SNP 35439 to 36039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,247 DEBUG Processing 119/518 atomic regions from SNP 35471 to 36071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,264 DEBUG Processing 444/531 atomic regions from SNP 133113 to 133713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,346 DEBUG Processing 120/347 atomic regions from SNP 35739 to 36339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,431 DEBUG Processing 120/518 atomic regions from SNP 35771 to 36371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,461 DEBUG Processing 445/531 atomic regions from SNP 133413 to 134013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,504 DEBUG Processing 121/347 atomic regions from SNP 36039 to 36639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,636 DEBUG Processing 121/518 atomic regions from SNP 36071 to 36671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,662 DEBUG Processing 446/531 atomic regions from SNP 133713 to 134313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,666 DEBUG Processing 122/347 atomic regions from SNP 36339 to 36939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,834 DEBUG Processing 122/518 atomic regions from SNP 36371 to 36971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,836 DEBUG Processing 123/347 atomic regions from SNP 36639 to 37239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,867 DEBUG Processing 447/531 atomic regions from SNP 134013 to 134613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,999 DEBUG Processing 124/347 atomic regions from SNP 36939 to 37539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,036 DEBUG Processing 123/518 atomic regions from SNP 36671 to 37271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,073 DEBUG Processing 448/531 atomic regions from SNP 134313 to 134913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,162 DEBUG Processing 125/347 atomic regions from SNP 37239 to 37839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,234 DEBUG Processing 124/518 atomic regions from SNP 36971 to 37571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,259 DEBUG Processing 449/531 atomic regions from SNP 134613 to 135213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,339 DEBUG Processing 126/347 atomic regions from SNP 37539 to 38139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,417 DEBUG Processing 125/518 atomic regions from SNP 37271 to 37871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,442 DEBUG Processing 450/531 atomic regions from SNP 134913 to 135513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,523 DEBUG Processing 127/347 atomic regions from SNP 37839 to 38439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,617 DEBUG Processing 126/518 atomic regions from SNP 37571 to 38171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,619 DEBUG Processing 451/531 atomic regions from SNP 135213 to 135813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,687 DEBUG Processing 128/347 atomic regions from SNP 38139 to 38739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,800 DEBUG Processing 452/531 atomic regions from SNP 135513 to 136113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,803 DEBUG Processing 127/518 atomic regions from SNP 37871 to 38471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,846 DEBUG Processing 129/347 atomic regions from SNP 38439 to 39039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,987 DEBUG Processing 453/531 atomic regions from SNP 135813 to 136413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,988 DEBUG Processing 128/518 atomic regions from SNP 38171 to 38771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,007 DEBUG Processing 130/347 atomic regions from SNP 38739 to 39339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,172 DEBUG Processing 131/347 atomic regions from SNP 39039 to 39639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,176 DEBUG Processing 454/531 atomic regions from SNP 136113 to 136713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,177 DEBUG Processing 129/518 atomic regions from SNP 38471 to 39071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,339 DEBUG Processing 132/347 atomic regions from SNP 39339 to 39939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,362 DEBUG Processing 130/518 atomic regions from SNP 38771 to 39371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,364 DEBUG Processing 455/531 atomic regions from SNP 136413 to 137013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,502 DEBUG Processing 133/347 atomic regions from SNP 39639 to 40239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,548 DEBUG Processing 131/518 atomic regions from SNP 39071 to 39671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,553 DEBUG Processing 456/531 atomic regions from SNP 136713 to 137313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,660 DEBUG Processing 134/347 atomic regions from SNP 39939 to 40539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,730 DEBUG Processing 132/518 atomic regions from SNP 39371 to 39971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,735 DEBUG Processing 457/531 atomic regions from SNP 137013 to 137613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,819 DEBUG Processing 135/347 atomic regions from SNP 40239 to 40839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,916 DEBUG Processing 133/518 atomic regions from SNP 39671 to 40271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,921 DEBUG Processing 458/531 atomic regions from SNP 137313 to 137913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,990 DEBUG Processing 136/347 atomic regions from SNP 40539 to 41139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,100 DEBUG Processing 134/518 atomic regions from SNP 39971 to 40571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,104 DEBUG Processing 459/531 atomic regions from SNP 137613 to 138213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,152 DEBUG Processing 137/347 atomic regions from SNP 40839 to 41439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,288 DEBUG Processing 460/531 atomic regions from SNP 137913 to 138513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,291 DEBUG Processing 135/518 atomic regions from SNP 40271 to 40871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,306 DEBUG Processing 138/347 atomic regions from SNP 41139 to 41739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,467 DEBUG Processing 139/347 atomic regions from SNP 41439 to 42039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,475 DEBUG Processing 461/531 atomic regions from SNP 138213 to 138813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,483 DEBUG Processing 136/518 atomic regions from SNP 40571 to 41171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,635 DEBUG Processing 140/347 atomic regions from SNP 41739 to 42339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,663 DEBUG Processing 462/531 atomic regions from SNP 138513 to 139113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,674 DEBUG Processing 137/518 atomic regions from SNP 40871 to 41471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,796 DEBUG Processing 141/347 atomic regions from SNP 42039 to 42639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,847 DEBUG Processing 463/531 atomic regions from SNP 138813 to 139413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,858 DEBUG Processing 138/518 atomic regions from SNP 41171 to 41771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,954 DEBUG Processing 142/347 atomic regions from SNP 42339 to 42939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,029 DEBUG Processing 464/531 atomic regions from SNP 139113 to 139713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,041 DEBUG Processing 139/518 atomic regions from SNP 41471 to 42071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,114 DEBUG Processing 143/347 atomic regions from SNP 42639 to 43239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,209 DEBUG Processing 465/531 atomic regions from SNP 139413 to 140013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,226 DEBUG Processing 140/518 atomic regions from SNP 41771 to 42371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,270 DEBUG Processing 144/347 atomic regions from SNP 42939 to 43539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,401 DEBUG Processing 466/531 atomic regions from SNP 139713 to 140313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,416 DEBUG Processing 141/518 atomic regions from SNP 42071 to 42671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,424 DEBUG Processing 145/347 atomic regions from SNP 43239 to 43839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,584 DEBUG Processing 146/347 atomic regions from SNP 43539 to 44139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,595 DEBUG Processing 467/531 atomic regions from SNP 140013 to 140613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,606 DEBUG Processing 142/518 atomic regions from SNP 42371 to 42971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,749 DEBUG Processing 147/347 atomic regions from SNP 43839 to 44439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,793 DEBUG Processing 468/531 atomic regions from SNP 140313 to 140913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,798 DEBUG Processing 143/518 atomic regions from SNP 42671 to 43271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,907 DEBUG Processing 148/347 atomic regions from SNP 44139 to 44739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,987 DEBUG Processing 144/518 atomic regions from SNP 42971 to 43571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,997 DEBUG Processing 469/531 atomic regions from SNP 140613 to 141213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,065 DEBUG Processing 149/347 atomic regions from SNP 44439 to 45039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,186 DEBUG Processing 145/518 atomic regions from SNP 43271 to 43871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,196 DEBUG Processing 470/531 atomic regions from SNP 140913 to 141513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,227 DEBUG Processing 150/347 atomic regions from SNP 44739 to 45339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,372 DEBUG Processing 146/518 atomic regions from SNP 43571 to 44171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,373 DEBUG Processing 471/531 atomic regions from SNP 141213 to 141813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,381 DEBUG Processing 151/347 atomic regions from SNP 45039 to 45639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,542 DEBUG Processing 152/347 atomic regions from SNP 45339 to 45939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,558 DEBUG Processing 472/531 atomic regions from SNP 141513 to 142113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,565 DEBUG Processing 147/518 atomic regions from SNP 43871 to 44471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,706 DEBUG Processing 153/347 atomic regions from SNP 45639 to 46239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,744 DEBUG Processing 473/531 atomic regions from SNP 141813 to 142413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,754 DEBUG Processing 148/518 atomic regions from SNP 44171 to 44771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,891 DEBUG Processing 154/347 atomic regions from SNP 45939 to 46539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,945 DEBUG Processing 149/518 atomic regions from SNP 44471 to 45071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,952 DEBUG Processing 474/531 atomic regions from SNP 142113 to 142713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,053 DEBUG Processing 155/347 atomic regions from SNP 46239 to 46839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,125 DEBUG Processing 150/518 atomic regions from SNP 44771 to 45371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,143 DEBUG Processing 475/531 atomic regions from SNP 142413 to 143013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,216 DEBUG Processing 156/347 atomic regions from SNP 46539 to 47139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,309 DEBUG Processing 151/518 atomic regions from SNP 45071 to 45671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,321 DEBUG Processing 476/531 atomic regions from SNP 142713 to 143313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,381 DEBUG Processing 157/347 atomic regions from SNP 46839 to 47439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,505 DEBUG Processing 477/531 atomic regions from SNP 143013 to 143613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,505 DEBUG Processing 152/518 atomic regions from SNP 45371 to 45971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,540 DEBUG Processing 158/347 atomic regions from SNP 47139 to 47739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,688 DEBUG Processing 478/531 atomic regions from SNP 143313 to 143913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,690 DEBUG Processing 153/518 atomic regions from SNP 45671 to 46271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,697 DEBUG Processing 159/347 atomic regions from SNP 47439 to 48039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,856 DEBUG Processing 160/347 atomic regions from SNP 47739 to 48339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,867 DEBUG Processing 154/518 atomic regions from SNP 45971 to 46571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,868 DEBUG Processing 479/531 atomic regions from SNP 143613 to 144213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,011 DEBUG Processing 161/347 atomic regions from SNP 48039 to 48639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,045 DEBUG Processing 155/518 atomic regions from SNP 46271 to 46871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,047 DEBUG Processing 480/531 atomic regions from SNP 143913 to 144513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,176 DEBUG Processing 162/347 atomic regions from SNP 48339 to 48939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,233 DEBUG Processing 481/531 atomic regions from SNP 144213 to 144813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,236 DEBUG Processing 156/518 atomic regions from SNP 46571 to 47171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,339 DEBUG Processing 163/347 atomic regions from SNP 48639 to 49239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,424 DEBUG Processing 157/518 atomic regions from SNP 46871 to 47471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,444 DEBUG Processing 482/531 atomic regions from SNP 144513 to 145113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,495 DEBUG Processing 164/347 atomic regions from SNP 48939 to 49539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,606 DEBUG Processing 158/518 atomic regions from SNP 47171 to 47771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,638 DEBUG Processing 483/531 atomic regions from SNP 144813 to 145413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,648 DEBUG Processing 165/347 atomic regions from SNP 49239 to 49839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,795 DEBUG Processing 159/518 atomic regions from SNP 47471 to 48071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,812 DEBUG Processing 166/347 atomic regions from SNP 49539 to 50139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,831 DEBUG Processing 484/531 atomic regions from SNP 145113 to 145713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,977 DEBUG Processing 167/347 atomic regions from SNP 49839 to 50439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,984 DEBUG Processing 160/518 atomic regions from SNP 47771 to 48371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,016 DEBUG Processing 485/531 atomic regions from SNP 145413 to 146013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,139 DEBUG Processing 168/347 atomic regions from SNP 50139 to 50739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,178 DEBUG Processing 161/518 atomic regions from SNP 48071 to 48671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,200 DEBUG Processing 486/531 atomic regions from SNP 145713 to 146313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,299 DEBUG Processing 169/347 atomic regions from SNP 50439 to 51039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,371 DEBUG Processing 162/518 atomic regions from SNP 48371 to 48971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,387 DEBUG Processing 487/531 atomic regions from SNP 146013 to 146613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,461 DEBUG Processing 170/347 atomic regions from SNP 50739 to 51339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,560 DEBUG Processing 163/518 atomic regions from SNP 48671 to 49271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,570 DEBUG Processing 488/531 atomic regions from SNP 146313 to 146913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,620 DEBUG Processing 171/347 atomic regions from SNP 51039 to 51639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,745 DEBUG Processing 164/518 atomic regions from SNP 48971 to 49571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,759 DEBUG Processing 489/531 atomic regions from SNP 146613 to 147213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,774 DEBUG Processing 172/347 atomic regions from SNP 51339 to 51939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,932 DEBUG Processing 173/347 atomic regions from SNP 51639 to 52239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,936 DEBUG Processing 165/518 atomic regions from SNP 49271 to 49871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,949 DEBUG Processing 490/531 atomic regions from SNP 146913 to 147513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,108 DEBUG Processing 174/347 atomic regions from SNP 51939 to 52539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,130 DEBUG Processing 166/518 atomic regions from SNP 49571 to 50171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,131 DEBUG Processing 491/531 atomic regions from SNP 147213 to 147813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,286 DEBUG Processing 175/347 atomic regions from SNP 52239 to 52839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,315 DEBUG Processing 492/531 atomic regions from SNP 147513 to 148113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,329 DEBUG Processing 167/518 atomic regions from SNP 49871 to 50471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,445 DEBUG Processing 176/347 atomic regions from SNP 52539 to 53139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,498 DEBUG Processing 493/531 atomic regions from SNP 147813 to 148413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,531 DEBUG Processing 168/518 atomic regions from SNP 50171 to 50771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,599 DEBUG Processing 177/347 atomic regions from SNP 52839 to 53439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,676 DEBUG Processing 494/531 atomic regions from SNP 148113 to 148713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,729 DEBUG Processing 169/518 atomic regions from SNP 50471 to 51071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,756 DEBUG Processing 178/347 atomic regions from SNP 53139 to 53739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,852 DEBUG Processing 495/531 atomic regions from SNP 148413 to 149013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,910 DEBUG Processing 179/347 atomic regions from SNP 53439 to 54039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,918 DEBUG Processing 170/518 atomic regions from SNP 50771 to 51371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,030 DEBUG Processing 496/531 atomic regions from SNP 148713 to 149313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,063 DEBUG Processing 180/347 atomic regions from SNP 53739 to 54339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,097 DEBUG Processing 171/518 atomic regions from SNP 51071 to 51671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,217 DEBUG Processing 497/531 atomic regions from SNP 149013 to 149613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,225 DEBUG Processing 181/347 atomic regions from SNP 54039 to 54639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,277 DEBUG Processing 172/518 atomic regions from SNP 51371 to 51971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,388 DEBUG Processing 182/347 atomic regions from SNP 54339 to 54939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,400 DEBUG Processing 498/531 atomic regions from SNP 149313 to 149913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,482 DEBUG Processing 173/518 atomic regions from SNP 51671 to 52271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,546 DEBUG Processing 183/347 atomic regions from SNP 54639 to 55239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,580 DEBUG Processing 499/531 atomic regions from SNP 149613 to 150213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,671 DEBUG Processing 174/518 atomic regions from SNP 51971 to 52571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,703 DEBUG Processing 184/347 atomic regions from SNP 54939 to 55539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,759 DEBUG Processing 500/531 atomic regions from SNP 149913 to 150513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,857 DEBUG Processing 175/518 atomic regions from SNP 52271 to 52871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,863 DEBUG Processing 185/347 atomic regions from SNP 55239 to 55839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,940 DEBUG Processing 501/531 atomic regions from SNP 150213 to 150813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,024 DEBUG Processing 186/347 atomic regions from SNP 55539 to 56139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,047 DEBUG Processing 176/518 atomic regions from SNP 52571 to 53171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,123 DEBUG Processing 502/531 atomic regions from SNP 150513 to 151113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,184 DEBUG Processing 187/347 atomic regions from SNP 55839 to 56439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,236 DEBUG Processing 177/518 atomic regions from SNP 52871 to 53471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,309 DEBUG Processing 503/531 atomic regions from SNP 150813 to 151413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,340 DEBUG Processing 188/347 atomic regions from SNP 56139 to 56739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,420 DEBUG Processing 178/518 atomic regions from SNP 53171 to 53771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,492 DEBUG Processing 504/531 atomic regions from SNP 151113 to 151713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,503 DEBUG Processing 189/347 atomic regions from SNP 56439 to 57039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,604 DEBUG Processing 179/518 atomic regions from SNP 53471 to 54071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,668 DEBUG Processing 190/347 atomic regions from SNP 56739 to 57339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,680 DEBUG Processing 505/531 atomic regions from SNP 151413 to 152013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,789 DEBUG Processing 180/518 atomic regions from SNP 53771 to 54371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,831 DEBUG Processing 191/347 atomic regions from SNP 57039 to 57639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,868 DEBUG Processing 506/531 atomic regions from SNP 151713 to 152313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,979 DEBUG Processing 181/518 atomic regions from SNP 54071 to 54671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,992 DEBUG Processing 192/347 atomic regions from SNP 57339 to 57939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,048 DEBUG Processing 507/531 atomic regions from SNP 152013 to 152613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,159 DEBUG Processing 193/347 atomic regions from SNP 57639 to 58239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,172 DEBUG Processing 182/518 atomic regions from SNP 54371 to 54971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,231 DEBUG Processing 508/531 atomic regions from SNP 152313 to 152913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,323 DEBUG Processing 194/347 atomic regions from SNP 57939 to 58539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,376 DEBUG Processing 183/518 atomic regions from SNP 54671 to 55271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,416 DEBUG Processing 509/531 atomic regions from SNP 152613 to 153213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,481 DEBUG Processing 195/347 atomic regions from SNP 58239 to 58839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,589 DEBUG Processing 184/518 atomic regions from SNP 54971 to 55571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,607 DEBUG Processing 510/531 atomic regions from SNP 152913 to 153513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,645 DEBUG Processing 196/347 atomic regions from SNP 58539 to 59139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,793 DEBUG Processing 511/531 atomic regions from SNP 153213 to 153813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,806 DEBUG Processing 185/518 atomic regions from SNP 55271 to 55871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,813 DEBUG Processing 197/347 atomic regions from SNP 58839 to 59439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,977 DEBUG Processing 512/531 atomic regions from SNP 153513 to 154113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,980 DEBUG Processing 198/347 atomic regions from SNP 59139 to 59739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,039 DEBUG Processing 186/518 atomic regions from SNP 55571 to 56171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,138 DEBUG Processing 199/347 atomic regions from SNP 59439 to 60039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,156 DEBUG Processing 513/531 atomic regions from SNP 153813 to 154413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,260 DEBUG Processing 187/518 atomic regions from SNP 55871 to 56471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,300 DEBUG Processing 200/347 atomic regions from SNP 59739 to 60339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,335 DEBUG Processing 514/531 atomic regions from SNP 154113 to 154713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,475 DEBUG Processing 201/347 atomic regions from SNP 60039 to 60639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,475 DEBUG Processing 188/518 atomic regions from SNP 56171 to 56771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,514 DEBUG Processing 515/531 atomic regions from SNP 154413 to 155013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,645 DEBUG Processing 202/347 atomic regions from SNP 60339 to 60939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,684 DEBUG Processing 189/518 atomic regions from SNP 56471 to 57071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,698 DEBUG Processing 516/531 atomic regions from SNP 154713 to 155313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,825 DEBUG Processing 203/347 atomic regions from SNP 60639 to 61239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,880 DEBUG Processing 190/518 atomic regions from SNP 56771 to 57371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,882 DEBUG Processing 517/531 atomic regions from SNP 155013 to 155613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,989 DEBUG Processing 204/347 atomic regions from SNP 60939 to 61539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,062 DEBUG Processing 518/531 atomic regions from SNP 155313 to 155913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,094 DEBUG Processing 191/518 atomic regions from SNP 57071 to 57671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,146 DEBUG Processing 205/347 atomic regions from SNP 61239 to 61839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,238 DEBUG Processing 519/531 atomic regions from SNP 155613 to 156213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,303 DEBUG Processing 206/347 atomic regions from SNP 61539 to 62139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,304 DEBUG Processing 192/518 atomic regions from SNP 57371 to 57971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,418 DEBUG Processing 520/531 atomic regions from SNP 155913 to 156513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,459 DEBUG Processing 207/347 atomic regions from SNP 61839 to 62439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,516 DEBUG Processing 193/518 atomic regions from SNP 57671 to 58271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,595 DEBUG Processing 521/531 atomic regions from SNP 156213 to 156813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,613 DEBUG Processing 208/347 atomic regions from SNP 62139 to 62739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,722 DEBUG Processing 194/518 atomic regions from SNP 57971 to 58571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,765 DEBUG Processing 209/347 atomic regions from SNP 62439 to 63039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,769 DEBUG Processing 522/531 atomic regions from SNP 156513 to 157113 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,922 DEBUG Processing 210/347 atomic regions from SNP 62739 to 63339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,923 DEBUG Processing 195/518 atomic regions from SNP 58271 to 58871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,946 DEBUG Processing 523/531 atomic regions from SNP 156813 to 157413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,075 DEBUG Processing 211/347 atomic regions from SNP 63039 to 63639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,119 DEBUG Processing 524/531 atomic regions from SNP 157113 to 157713 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,129 DEBUG Processing 196/518 atomic regions from SNP 58571 to 59171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,225 DEBUG Processing 212/347 atomic regions from SNP 63339 to 63939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,295 DEBUG Processing 525/531 atomic regions from SNP 157413 to 158013 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,339 DEBUG Processing 197/518 atomic regions from SNP 58871 to 59471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,378 DEBUG Processing 213/347 atomic regions from SNP 63639 to 64239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,469 DEBUG Processing 526/531 atomic regions from SNP 157713 to 158313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,531 DEBUG Processing 214/347 atomic regions from SNP 63939 to 64539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,555 DEBUG Processing 198/518 atomic regions from SNP 59171 to 59771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,642 DEBUG Processing 527/531 atomic regions from SNP 158013 to 158613 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,681 DEBUG Processing 215/347 atomic regions from SNP 64239 to 64839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,772 DEBUG Processing 199/518 atomic regions from SNP 59471 to 60071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,818 DEBUG Processing 528/531 atomic regions from SNP 158313 to 158913 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,837 DEBUG Processing 216/347 atomic regions from SNP 64539 to 65139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,978 DEBUG Processing 200/518 atomic regions from SNP 59771 to 60371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,992 DEBUG Processing 217/347 atomic regions from SNP 64839 to 65439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:58,999 DEBUG Processing 529/531 atomic regions from SNP 158613 to 159213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,150 DEBUG Processing 218/347 atomic regions from SNP 65139 to 65739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,169 DEBUG Processing 201/518 atomic regions from SNP 60071 to 60671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,178 DEBUG Processing 530/531 atomic regions from SNP 158913 to 159513 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,309 DEBUG Processing 219/347 atomic regions from SNP 65439 to 66039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,362 DEBUG Processing 531/531 atomic regions from SNP 159213 to 159813 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,367 DEBUG Processing 202/518 atomic regions from SNP 60371 to 60971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,460 DEBUG Processing 220/347 atomic regions from SNP 65739 to 66339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,474 DEBUG Unique SNPs positions in subchromosome 1: 159814 2025-01-31 09:56:59,557 DEBUG Processing 203/518 atomic regions from SNP 60671 to 61271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,618 DEBUG Processing 221/347 atomic regions from SNP 66039 to 66639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,746 DEBUG Processing 204/518 atomic regions from SNP 60971 to 61571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,775 DEBUG Processing 222/347 atomic regions from SNP 66339 to 66939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,939 DEBUG Processing 223/347 atomic regions from SNP 66639 to 67239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:59,951 DEBUG Processing 205/518 atomic regions from SNP 61271 to 61871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,093 DEBUG Processing 224/347 atomic regions from SNP 66939 to 67539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,167 DEBUG Processing 206/518 atomic regions from SNP 61571 to 62171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,247 DEBUG Processing 225/347 atomic regions from SNP 67239 to 67839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,367 DEBUG Processing 207/518 atomic regions from SNP 61871 to 62471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,401 DEBUG Processing 226/347 atomic regions from SNP 67539 to 68139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,552 DEBUG Processing 227/347 atomic regions from SNP 67839 to 68439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,574 DEBUG Processing 208/518 atomic regions from SNP 62171 to 62771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,710 DEBUG Processing 228/347 atomic regions from SNP 68139 to 68739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,778 DEBUG Processing 209/518 atomic regions from SNP 62471 to 63071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,883 DEBUG Processing 229/347 atomic regions from SNP 68439 to 69039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:00,965 DEBUG Processing 210/518 atomic regions from SNP 62771 to 63371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,064 DEBUG Processing 230/347 atomic regions from SNP 68739 to 69339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,146 DEBUG Processing 211/518 atomic regions from SNP 63071 to 63671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,243 DEBUG Processing 231/347 atomic regions from SNP 69039 to 69639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,324 DEBUG Processing 212/518 atomic regions from SNP 63371 to 63971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,417 DEBUG Processing 232/347 atomic regions from SNP 69339 to 69939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,508 DEBUG Processing 213/518 atomic regions from SNP 63671 to 64271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,568 DEBUG Processing 233/347 atomic regions from SNP 69639 to 70239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,687 DEBUG Processing 214/518 atomic regions from SNP 63971 to 64571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,722 DEBUG Processing 234/347 atomic regions from SNP 69939 to 70539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:01,867 DEBUG Processing 215/518 atomic regions from SNP 64271 to 64871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,882 DEBUG Processing 235/347 atomic regions from SNP 70239 to 70839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,037 DEBUG Processing 236/347 atomic regions from SNP 70539 to 71139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,046 DEBUG Processing 216/518 atomic regions from SNP 64571 to 65171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,195 DEBUG Processing 237/347 atomic regions from SNP 70839 to 71439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,226 DEBUG Processing 217/518 atomic regions from SNP 64871 to 65471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,354 DEBUG Processing 238/347 atomic regions from SNP 71139 to 71739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,404 DEBUG Processing 218/518 atomic regions from SNP 65171 to 65771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,510 DEBUG Processing 239/347 atomic regions from SNP 71439 to 72039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,587 DEBUG Processing 219/518 atomic regions from SNP 65471 to 66071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,684 DEBUG Processing 240/347 atomic regions from SNP 71739 to 72339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,766 DEBUG Processing 220/518 atomic regions from SNP 65771 to 66371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,862 DEBUG Processing 241/347 atomic regions from SNP 72039 to 72639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:02,947 DEBUG Processing 221/518 atomic regions from SNP 66071 to 66671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,018 DEBUG Processing 242/347 atomic regions from SNP 72339 to 72939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,127 DEBUG Processing 222/518 atomic regions from SNP 66371 to 66971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,174 DEBUG Processing 243/347 atomic regions from SNP 72639 to 73239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,304 DEBUG Processing 223/518 atomic regions from SNP 66671 to 67271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,350 DEBUG Processing 244/347 atomic regions from SNP 72939 to 73539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,486 DEBUG Processing 224/518 atomic regions from SNP 66971 to 67571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,548 DEBUG Processing 245/347 atomic regions from SNP 73239 to 73839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,670 DEBUG Processing 225/518 atomic regions from SNP 67271 to 67871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,742 DEBUG Processing 246/347 atomic regions from SNP 73539 to 74139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:03,856 DEBUG Processing 226/518 atomic regions from SNP 67571 to 68171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,921 DEBUG Processing 247/347 atomic regions from SNP 73839 to 74439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,039 DEBUG Processing 227/518 atomic regions from SNP 67871 to 68471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,088 DEBUG Processing 248/347 atomic regions from SNP 74139 to 74739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,233 DEBUG Processing 228/518 atomic regions from SNP 68171 to 68771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,273 DEBUG Processing 249/347 atomic regions from SNP 74439 to 75039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,421 DEBUG Processing 229/518 atomic regions from SNP 68471 to 69071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,457 DEBUG Processing 250/347 atomic regions from SNP 74739 to 75339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,602 DEBUG Processing 230/518 atomic regions from SNP 68771 to 69371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,619 DEBUG Processing 251/347 atomic regions from SNP 75039 to 75639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,788 DEBUG Processing 252/347 atomic regions from SNP 75339 to 75939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,788 DEBUG Processing 231/518 atomic regions from SNP 69071 to 69671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,969 DEBUG Processing 253/347 atomic regions from SNP 75639 to 76239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:04,978 DEBUG Processing 232/518 atomic regions from SNP 69371 to 69971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,160 DEBUG Processing 254/347 atomic regions from SNP 75939 to 76539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,168 DEBUG Processing 233/518 atomic regions from SNP 69671 to 70271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,344 DEBUG Processing 255/347 atomic regions from SNP 76239 to 76839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,358 DEBUG Processing 234/518 atomic regions from SNP 69971 to 70571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,531 DEBUG Processing 256/347 atomic regions from SNP 76539 to 77139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,547 DEBUG Processing 235/518 atomic regions from SNP 70271 to 70871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,703 DEBUG Processing 257/347 atomic regions from SNP 76839 to 77439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,734 DEBUG Processing 236/518 atomic regions from SNP 70571 to 71171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,896 DEBUG Processing 258/347 atomic regions from SNP 77139 to 77739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:05,919 DEBUG Processing 237/518 atomic regions from SNP 70871 to 71471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,079 DEBUG Processing 259/347 atomic regions from SNP 77439 to 78039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,098 DEBUG Processing 238/518 atomic regions from SNP 71171 to 71771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,254 DEBUG Processing 260/347 atomic regions from SNP 77739 to 78339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,275 DEBUG Processing 239/518 atomic regions from SNP 71471 to 72071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,434 DEBUG Processing 261/347 atomic regions from SNP 78039 to 78639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,454 DEBUG Processing 240/518 atomic regions from SNP 71771 to 72371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,508 DEBUG Subchromosome time: 132.4171831740532, subchromosome SNPs: 159814 2025-01-31 09:57:06,508 DEBUG Estimated BADs: [1.44, 0.48, 4.31, 2.88, 5.75, 1.44, 0.36, 0.72, 4.31, 0.72, 5.75, 0.72, 1.44, 0.36, 1.44, 0.29] SNP counts: [21158, 11539, 11047, 8027, 3905, 1784, 8541, 5427, 5984, 12761, 2692, 14845, 18581, 2718, 21893, 8912] SNP IDs counts: [21158, 11539, 11047, 8027, 3905, 1784, 8541, 5427, 5984, 12761, 2692, 14845, 18581, 2718, 21893, 8912] Critical gap: 527731bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.04Mbp, 23.53Mbp, 29.37Mbp, 33.80Mbp, 36.00Mbp, 37.07Mbp, 42.48Mbp, 45.43Mbp, 48.61Mbp, 55.93Mbp, 57.34Mbp, 65.85Mbp, 76.08Mbp, 77.64Mbp, 89.62Mbp, 94.99Mbp] 2025-01-31 09:57:06,508 DEBUG chr17 time: 132.417650228017 s 2025-01-31 09:57:06,597 DEBUG chr17: Fitting background model for 16 segments 2025-01-31 09:57:06,610 DEBUG Processing 262/347 atomic regions from SNP 78339 to 78939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,636 DEBUG Processing 241/518 atomic regions from SNP 72071 to 72671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,778 DEBUG Processing 263/347 atomic regions from SNP 78639 to 79239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:06,823 DEBUG Processing 242/518 atomic regions from SNP 72371 to 72971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,945 DEBUG Processing 264/347 atomic regions from SNP 78939 to 79539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,008 DEBUG Processing 243/518 atomic regions from SNP 72671 to 73271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,123 DEBUG Processing 265/347 atomic regions from SNP 79239 to 79839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,193 DEBUG Processing 244/518 atomic regions from SNP 72971 to 73571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,307 DEBUG Processing 266/347 atomic regions from SNP 79539 to 80139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,383 DEBUG Processing 245/518 atomic regions from SNP 73271 to 73871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,470 DEBUG Processing 267/347 atomic regions from SNP 79839 to 80439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,570 DEBUG Processing 246/518 atomic regions from SNP 73571 to 74171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,635 DEBUG Processing 268/347 atomic regions from SNP 80139 to 80739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,755 DEBUG Processing 247/518 atomic regions from SNP 73871 to 74471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,804 DEBUG Processing 269/347 atomic regions from SNP 80439 to 81039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:07,944 DEBUG Processing 248/518 atomic regions from SNP 74171 to 74771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,967 DEBUG Processing 270/347 atomic regions from SNP 80739 to 81339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,139 DEBUG Processing 271/347 atomic regions from SNP 81039 to 81639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,145 DEBUG Processing 249/518 atomic regions from SNP 74471 to 75071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,304 DEBUG Processing 272/347 atomic regions from SNP 81339 to 81939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,333 DEBUG Processing 250/518 atomic regions from SNP 74771 to 75371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,471 DEBUG Processing 273/347 atomic regions from SNP 81639 to 82239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,518 DEBUG Processing 251/518 atomic regions from SNP 75071 to 75671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,641 DEBUG Processing 274/347 atomic regions from SNP 81939 to 82539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,714 DEBUG Processing 252/518 atomic regions from SNP 75371 to 75971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,813 DEBUG Processing 275/347 atomic regions from SNP 82239 to 82839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:08,905 DEBUG Processing 253/518 atomic regions from SNP 75671 to 76271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,987 DEBUG Processing 276/347 atomic regions from SNP 82539 to 83139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,092 DEBUG Processing 254/518 atomic regions from SNP 75971 to 76571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,158 DEBUG Processing 277/347 atomic regions from SNP 82839 to 83439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,282 DEBUG Processing 255/518 atomic regions from SNP 76271 to 76871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,322 DEBUG Processing 278/347 atomic regions from SNP 83139 to 83739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,476 DEBUG Processing 256/518 atomic regions from SNP 76571 to 77171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,492 DEBUG Processing 279/347 atomic regions from SNP 83439 to 84039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,662 DEBUG Processing 280/347 atomic regions from SNP 83739 to 84339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,689 DEBUG Processing 257/518 atomic regions from SNP 76871 to 77471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,825 DEBUG Processing 281/347 atomic regions from SNP 84039 to 84639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:09,881 DEBUG Processing 258/518 atomic regions from SNP 77171 to 77771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,987 DEBUG Processing 282/347 atomic regions from SNP 84339 to 84939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,067 DEBUG Processing 259/518 atomic regions from SNP 77471 to 78071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,147 DEBUG Processing 283/347 atomic regions from SNP 84639 to 85239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,251 DEBUG Processing 260/518 atomic regions from SNP 77771 to 78371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,310 DEBUG Processing 284/347 atomic regions from SNP 84939 to 85539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,437 DEBUG Processing 261/518 atomic regions from SNP 78071 to 78671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,475 DEBUG Processing 285/347 atomic regions from SNP 85239 to 85839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,643 DEBUG Processing 286/347 atomic regions from SNP 85539 to 86139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,653 DEBUG Processing 262/518 atomic regions from SNP 78371 to 78971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,809 DEBUG Processing 287/347 atomic regions from SNP 85839 to 86439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:10,842 DEBUG Processing 263/518 atomic regions from SNP 78671 to 79271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,974 DEBUG Processing 288/347 atomic regions from SNP 86139 to 86739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,026 DEBUG Processing 264/518 atomic regions from SNP 78971 to 79571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,143 DEBUG Processing 289/347 atomic regions from SNP 86439 to 87039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,210 DEBUG Processing 265/518 atomic regions from SNP 79271 to 79871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,310 DEBUG Processing 290/347 atomic regions from SNP 86739 to 87339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,393 DEBUG Processing 266/518 atomic regions from SNP 79571 to 80171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,477 DEBUG Processing 291/347 atomic regions from SNP 87039 to 87639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,574 DEBUG Processing 267/518 atomic regions from SNP 79871 to 80471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,642 DEBUG Processing 292/347 atomic regions from SNP 87339 to 87939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,767 DEBUG Processing 268/518 atomic regions from SNP 80171 to 80771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,810 DEBUG Processing 293/347 atomic regions from SNP 87639 to 88239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,949 DEBUG Processing 269/518 atomic regions from SNP 80471 to 81071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,977 DEBUG Processing 294/347 atomic regions from SNP 87939 to 88539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,124 DEBUG Processing 270/518 atomic regions from SNP 80771 to 81371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,144 DEBUG Processing 295/347 atomic regions from SNP 88239 to 88839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,300 DEBUG Processing 271/518 atomic regions from SNP 81071 to 81671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,307 DEBUG Processing 296/347 atomic regions from SNP 88539 to 89139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,475 DEBUG Processing 297/347 atomic regions from SNP 88839 to 89439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,483 DEBUG Processing 272/518 atomic regions from SNP 81371 to 81971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,647 DEBUG Processing 298/347 atomic regions from SNP 89139 to 89739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,671 DEBUG Processing 273/518 atomic regions from SNP 81671 to 82271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,832 DEBUG Processing 299/347 atomic regions from SNP 89439 to 90039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,855 DEBUG Processing 274/518 atomic regions from SNP 81971 to 82571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,014 DEBUG Processing 300/347 atomic regions from SNP 89739 to 90339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,037 DEBUG Processing 275/518 atomic regions from SNP 82271 to 82871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,177 DEBUG Processing 301/347 atomic regions from SNP 90039 to 90639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,214 DEBUG Processing 276/518 atomic regions from SNP 82571 to 83171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,361 DEBUG Processing 302/347 atomic regions from SNP 90339 to 90939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,396 DEBUG Processing 277/518 atomic regions from SNP 82871 to 83471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,558 DEBUG Processing 303/347 atomic regions from SNP 90639 to 91239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,581 DEBUG Processing 278/518 atomic regions from SNP 83171 to 83771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,731 DEBUG Processing 304/347 atomic regions from SNP 90939 to 91539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,757 DEBUG Processing 279/518 atomic regions from SNP 83471 to 84071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,889 DEBUG Processing 305/347 atomic regions from SNP 91239 to 91839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,933 DEBUG Processing 280/518 atomic regions from SNP 83771 to 84371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,057 DEBUG Processing 306/347 atomic regions from SNP 91539 to 92139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,111 DEBUG Processing 281/518 atomic regions from SNP 84071 to 84671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,230 DEBUG Processing 307/347 atomic regions from SNP 91839 to 92439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,296 DEBUG Processing 282/518 atomic regions from SNP 84371 to 84971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,388 DEBUG Processing 308/347 atomic regions from SNP 92139 to 92739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,481 DEBUG Processing 283/518 atomic regions from SNP 84671 to 85271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,556 DEBUG Processing 309/347 atomic regions from SNP 92439 to 93039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,663 DEBUG Processing 284/518 atomic regions from SNP 84971 to 85571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,728 DEBUG Processing 310/347 atomic regions from SNP 92739 to 93339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,840 DEBUG Processing 285/518 atomic regions from SNP 85271 to 85871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,904 DEBUG Processing 311/347 atomic regions from SNP 93039 to 93639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,024 DEBUG Processing 286/518 atomic regions from SNP 85571 to 86171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,063 DEBUG Processing 312/347 atomic regions from SNP 93339 to 93939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,208 DEBUG Processing 287/518 atomic regions from SNP 85871 to 86471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,234 DEBUG Processing 313/347 atomic regions from SNP 93639 to 94239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,388 DEBUG Processing 288/518 atomic regions from SNP 86171 to 86771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,416 DEBUG Processing 314/347 atomic regions from SNP 93939 to 94539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,564 DEBUG Processing 289/518 atomic regions from SNP 86471 to 87071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,597 DEBUG Processing 315/347 atomic regions from SNP 94239 to 94839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,742 DEBUG Processing 290/518 atomic regions from SNP 86771 to 87371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,775 DEBUG Processing 316/347 atomic regions from SNP 94539 to 95139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,920 DEBUG Processing 291/518 atomic regions from SNP 87071 to 87671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,946 DEBUG Processing 317/347 atomic regions from SNP 94839 to 95439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,099 DEBUG Processing 292/518 atomic regions from SNP 87371 to 87971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,123 DEBUG Processing 318/347 atomic regions from SNP 95139 to 95739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,276 DEBUG Processing 293/518 atomic regions from SNP 87671 to 88271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,305 DEBUG Processing 319/347 atomic regions from SNP 95439 to 96039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,449 DEBUG Processing 294/518 atomic regions from SNP 87971 to 88571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,484 DEBUG Processing 320/347 atomic regions from SNP 95739 to 96339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,624 DEBUG Processing 295/518 atomic regions from SNP 88271 to 88871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,660 DEBUG Processing 321/347 atomic regions from SNP 96039 to 96639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,805 DEBUG Processing 296/518 atomic regions from SNP 88571 to 89171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,833 DEBUG Processing 322/347 atomic regions from SNP 96339 to 96939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,987 DEBUG Processing 297/518 atomic regions from SNP 88871 to 89471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,007 DEBUG Processing 323/347 atomic regions from SNP 96639 to 97239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,162 DEBUG Processing 298/518 atomic regions from SNP 89171 to 89771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,180 DEBUG Processing 324/347 atomic regions from SNP 96939 to 97539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,331 DEBUG Processing 299/518 atomic regions from SNP 89471 to 90071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,351 DEBUG Processing 325/347 atomic regions from SNP 97239 to 97839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,502 DEBUG Processing 300/518 atomic regions from SNP 89771 to 90371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,515 DEBUG Processing 326/347 atomic regions from SNP 97539 to 98139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,679 DEBUG Processing 301/518 atomic regions from SNP 90071 to 90671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,691 DEBUG Processing 327/347 atomic regions from SNP 97839 to 98439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,857 DEBUG Processing 302/518 atomic regions from SNP 90371 to 90971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,861 DEBUG Processing 328/347 atomic regions from SNP 98139 to 98739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,027 DEBUG Processing 329/347 atomic regions from SNP 98439 to 99039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,033 DEBUG Processing 303/518 atomic regions from SNP 90671 to 91271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,191 DEBUG Processing 330/347 atomic regions from SNP 98739 to 99339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,209 DEBUG Processing 304/518 atomic regions from SNP 90971 to 91571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,370 DEBUG Processing 331/347 atomic regions from SNP 99039 to 99639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,383 DEBUG Processing 305/518 atomic regions from SNP 91271 to 91871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,531 DEBUG Processing 332/347 atomic regions from SNP 99339 to 99939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,562 DEBUG Processing 306/518 atomic regions from SNP 91571 to 92171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,689 DEBUG Processing 333/347 atomic regions from SNP 99639 to 100239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,746 DEBUG Processing 307/518 atomic regions from SNP 91871 to 92471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,851 DEBUG Processing 334/347 atomic regions from SNP 99939 to 100539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,923 DEBUG Processing 308/518 atomic regions from SNP 92171 to 92771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,011 DEBUG Processing 335/347 atomic regions from SNP 100239 to 100839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,102 DEBUG Processing 309/518 atomic regions from SNP 92471 to 93071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,166 DEBUG Processing 336/347 atomic regions from SNP 100539 to 101139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,290 DEBUG Processing 310/518 atomic regions from SNP 92771 to 93371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,335 DEBUG Processing 337/347 atomic regions from SNP 100839 to 101439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,472 DEBUG Processing 311/518 atomic regions from SNP 93071 to 93671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,496 DEBUG Processing 338/347 atomic regions from SNP 101139 to 101739 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,650 DEBUG Processing 312/518 atomic regions from SNP 93371 to 93971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,660 DEBUG Processing 339/347 atomic regions from SNP 101439 to 102039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,830 DEBUG Processing 340/347 atomic regions from SNP 101739 to 102339 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,834 DEBUG Processing 313/518 atomic regions from SNP 93671 to 94271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,005 DEBUG Processing 341/347 atomic regions from SNP 102039 to 102639 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,026 DEBUG Processing 314/518 atomic regions from SNP 93971 to 94571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,168 DEBUG Processing 342/347 atomic regions from SNP 102339 to 102939 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,215 DEBUG Processing 315/518 atomic regions from SNP 94271 to 94871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,327 DEBUG Processing 343/347 atomic regions from SNP 102639 to 103239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,403 DEBUG Processing 316/518 atomic regions from SNP 94571 to 95171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,504 DEBUG Processing 344/347 atomic regions from SNP 102939 to 103539 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,611 DEBUG Processing 317/518 atomic regions from SNP 94871 to 95471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,668 DEBUG Processing 345/347 atomic regions from SNP 103239 to 103839 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,814 DEBUG Processing 318/518 atomic regions from SNP 95171 to 95771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,838 DEBUG Processing 346/347 atomic regions from SNP 103539 to 104139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,997 DEBUG Processing 347/347 atomic regions from SNP 103839 to 104439 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,004 DEBUG Processing 319/518 atomic regions from SNP 95471 to 96071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,118 DEBUG Unique SNPs positions in subchromosome 1: 104440 2025-01-31 09:57:21,182 DEBUG Processing 320/518 atomic regions from SNP 95771 to 96371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,364 DEBUG Processing 321/518 atomic regions from SNP 96071 to 96671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,547 DEBUG Processing 322/518 atomic regions from SNP 96371 to 96971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,718 DEBUG Processing 323/518 atomic regions from SNP 96671 to 97271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,896 DEBUG Processing 324/518 atomic regions from SNP 96971 to 97571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,073 DEBUG Processing 325/518 atomic regions from SNP 97271 to 97871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,245 DEBUG Processing 326/518 atomic regions from SNP 97571 to 98171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,418 DEBUG Processing 327/518 atomic regions from SNP 97871 to 98471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,592 DEBUG Processing 328/518 atomic regions from SNP 98171 to 98771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,766 DEBUG Processing 329/518 atomic regions from SNP 98471 to 99071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,941 DEBUG Processing 330/518 atomic regions from SNP 98771 to 99371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,033 DEBUG Subchromosome time: 72.03469653590582, subchromosome SNPs: 104440 2025-01-31 09:57:23,034 DEBUG Estimated BADs: [5.99, 0.75, 4.49, 0.75, 1.50, 0.75, 7.49, 1.50, 0.75, 1.50, 0.50, 1.50, 4.49, 1.50, 0.37, 1.50] SNP counts: [8237, 873, 4443, 7880, 3444, 10157, 204, 3617, 5981, 8988, 3884, 15405, 4740, 4786, 5087, 16714] SNP IDs counts: [8237, 873, 4443, 7880, 3444, 10157, 204, 3617, 5981, 8988, 3884, 15405, 4740, 4786, 5087, 16714] Critical gap: 413483bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.09Mbp], 7.62Mbp, 8.24Mbp, 10.99Mbp, 15.56Mbp, 17.41Mbp, 23.13Mbp, 23.23Mbp, 25.16Mbp, 28.44Mbp, 33.32Mbp, 35.68Mbp, 44.25Mbp, 46.75Mbp, 49.33Mbp, 52.27Mbp, 61.43Mbp] 2025-01-31 09:57:23,034 DEBUG chr19 time: 72.03514979290776 s 2025-01-31 09:57:23,091 DEBUG chr19: Fitting background model for 16 segments 2025-01-31 09:57:23,111 DEBUG Processing 331/518 atomic regions from SNP 99071 to 99671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,280 DEBUG Processing 332/518 atomic regions from SNP 99371 to 99971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,458 DEBUG Processing 333/518 atomic regions from SNP 99671 to 100271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,633 DEBUG Processing 334/518 atomic regions from SNP 99971 to 100571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,805 DEBUG Processing 335/518 atomic regions from SNP 100271 to 100871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,979 DEBUG Processing 336/518 atomic regions from SNP 100571 to 101171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,160 DEBUG Processing 337/518 atomic regions from SNP 100871 to 101471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,334 DEBUG Processing 338/518 atomic regions from SNP 101171 to 101771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,506 DEBUG Processing 339/518 atomic regions from SNP 101471 to 102071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,698 DEBUG Processing 340/518 atomic regions from SNP 101771 to 102371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,898 DEBUG Processing 341/518 atomic regions from SNP 102071 to 102671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,092 DEBUG Processing 342/518 atomic regions from SNP 102371 to 102971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,272 DEBUG Processing 343/518 atomic regions from SNP 102671 to 103271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,466 DEBUG Processing 344/518 atomic regions from SNP 102971 to 103571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,665 DEBUG Processing 345/518 atomic regions from SNP 103271 to 103871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,872 DEBUG Processing 346/518 atomic regions from SNP 103571 to 104171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,079 DEBUG Processing 347/518 atomic regions from SNP 103871 to 104471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,274 DEBUG Processing 348/518 atomic regions from SNP 104171 to 104771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,452 DEBUG Processing 349/518 atomic regions from SNP 104471 to 105071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,623 DEBUG Processing 350/518 atomic regions from SNP 104771 to 105371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,795 DEBUG Processing 351/518 atomic regions from SNP 105071 to 105671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,969 DEBUG Processing 352/518 atomic regions from SNP 105371 to 105971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,140 DEBUG Processing 353/518 atomic regions from SNP 105671 to 106271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,310 DEBUG Processing 354/518 atomic regions from SNP 105971 to 106571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,481 DEBUG Processing 355/518 atomic regions from SNP 106271 to 106871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,658 DEBUG Processing 356/518 atomic regions from SNP 106571 to 107171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,832 DEBUG Processing 357/518 atomic regions from SNP 106871 to 107471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,004 DEBUG Processing 358/518 atomic regions from SNP 107171 to 107771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,181 DEBUG Processing 359/518 atomic regions from SNP 107471 to 108071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,374 DEBUG Processing 360/518 atomic regions from SNP 107771 to 108371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,555 DEBUG Processing 361/518 atomic regions from SNP 108071 to 108671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,742 DEBUG Processing 362/518 atomic regions from SNP 108371 to 108971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,930 DEBUG Processing 363/518 atomic regions from SNP 108671 to 109271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,119 DEBUG Processing 364/518 atomic regions from SNP 108971 to 109571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,317 DEBUG Processing 365/518 atomic regions from SNP 109271 to 109871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,490 DEBUG Processing 366/518 atomic regions from SNP 109571 to 110171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,663 DEBUG Processing 367/518 atomic regions from SNP 109871 to 110471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,837 DEBUG Processing 368/518 atomic regions from SNP 110171 to 110771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,010 DEBUG Processing 369/518 atomic regions from SNP 110471 to 111071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,186 DEBUG Processing 370/518 atomic regions from SNP 110771 to 111371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,364 DEBUG Processing 371/518 atomic regions from SNP 111071 to 111671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,537 DEBUG Processing 372/518 atomic regions from SNP 111371 to 111971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,707 DEBUG Processing 373/518 atomic regions from SNP 111671 to 112271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,884 DEBUG Processing 374/518 atomic regions from SNP 111971 to 112571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,059 DEBUG Processing 375/518 atomic regions from SNP 112271 to 112871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,229 DEBUG Processing 376/518 atomic regions from SNP 112571 to 113171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,401 DEBUG Processing 377/518 atomic regions from SNP 112871 to 113471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,574 DEBUG Processing 378/518 atomic regions from SNP 113171 to 113771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,757 DEBUG Processing 379/518 atomic regions from SNP 113471 to 114071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,937 DEBUG Processing 380/518 atomic regions from SNP 113771 to 114371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,125 DEBUG Processing 381/518 atomic regions from SNP 114071 to 114671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,334 DEBUG Processing 382/518 atomic regions from SNP 114371 to 114971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,531 DEBUG Processing 383/518 atomic regions from SNP 114671 to 115271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,731 DEBUG Processing 384/518 atomic regions from SNP 114971 to 115571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,926 DEBUG Processing 385/518 atomic regions from SNP 115271 to 115871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,104 DEBUG Processing 386/518 atomic regions from SNP 115571 to 116171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,285 DEBUG Processing 387/518 atomic regions from SNP 115871 to 116471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,463 DEBUG Processing 388/518 atomic regions from SNP 116171 to 116771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,646 DEBUG Processing 389/518 atomic regions from SNP 116471 to 117071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,833 DEBUG Processing 390/518 atomic regions from SNP 116771 to 117371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,019 DEBUG Processing 391/518 atomic regions from SNP 117071 to 117671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,200 DEBUG Processing 392/518 atomic regions from SNP 117371 to 117971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,384 DEBUG Processing 393/518 atomic regions from SNP 117671 to 118271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,563 DEBUG Processing 394/518 atomic regions from SNP 117971 to 118571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,747 DEBUG Processing 395/518 atomic regions from SNP 118271 to 118871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,923 DEBUG Processing 396/518 atomic regions from SNP 118571 to 119171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,100 DEBUG Processing 397/518 atomic regions from SNP 118871 to 119471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,276 DEBUG Processing 398/518 atomic regions from SNP 119171 to 119771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,455 DEBUG Processing 399/518 atomic regions from SNP 119471 to 120071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,633 DEBUG Processing 400/518 atomic regions from SNP 119771 to 120371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,814 DEBUG Processing 401/518 atomic regions from SNP 120071 to 120671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,017 DEBUG Processing 402/518 atomic regions from SNP 120371 to 120971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,208 DEBUG Processing 403/518 atomic regions from SNP 120671 to 121271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,381 DEBUG Processing 404/518 atomic regions from SNP 120971 to 121571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,553 DEBUG Processing 405/518 atomic regions from SNP 121271 to 121871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,725 DEBUG Processing 406/518 atomic regions from SNP 121571 to 122171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,905 DEBUG Processing 407/518 atomic regions from SNP 121871 to 122471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,085 DEBUG Processing 408/518 atomic regions from SNP 122171 to 122771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,265 DEBUG Processing 409/518 atomic regions from SNP 122471 to 123071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,444 DEBUG Processing 410/518 atomic regions from SNP 122771 to 123371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,618 DEBUG Processing 411/518 atomic regions from SNP 123071 to 123671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,795 DEBUG Processing 412/518 atomic regions from SNP 123371 to 123971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,971 DEBUG Processing 413/518 atomic regions from SNP 123671 to 124271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,145 DEBUG Processing 414/518 atomic regions from SNP 123971 to 124571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,320 DEBUG Processing 415/518 atomic regions from SNP 124271 to 124871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,495 DEBUG Processing 416/518 atomic regions from SNP 124571 to 125171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,671 DEBUG Processing 417/518 atomic regions from SNP 124871 to 125471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,851 DEBUG Processing 418/518 atomic regions from SNP 125171 to 125771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,038 DEBUG Processing 419/518 atomic regions from SNP 125471 to 126071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,230 DEBUG Processing 420/518 atomic regions from SNP 125771 to 126371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,426 DEBUG Processing 421/518 atomic regions from SNP 126071 to 126671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,603 DEBUG Processing 422/518 atomic regions from SNP 126371 to 126971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,782 DEBUG Processing 423/518 atomic regions from SNP 126671 to 127271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,958 DEBUG Processing 424/518 atomic regions from SNP 126971 to 127571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,134 DEBUG Processing 425/518 atomic regions from SNP 127271 to 127871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,306 DEBUG Processing 426/518 atomic regions from SNP 127571 to 128171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,486 DEBUG Processing 427/518 atomic regions from SNP 127871 to 128471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,673 DEBUG Processing 428/518 atomic regions from SNP 128171 to 128771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,859 DEBUG Processing 429/518 atomic regions from SNP 128471 to 129071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,036 DEBUG Processing 430/518 atomic regions from SNP 128771 to 129371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,221 DEBUG Processing 431/518 atomic regions from SNP 129071 to 129671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,401 DEBUG Processing 432/518 atomic regions from SNP 129371 to 129971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,580 DEBUG Processing 433/518 atomic regions from SNP 129671 to 130271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,757 DEBUG Processing 434/518 atomic regions from SNP 129971 to 130571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,936 DEBUG Processing 435/518 atomic regions from SNP 130271 to 130871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,117 DEBUG Processing 436/518 atomic regions from SNP 130571 to 131171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,300 DEBUG Processing 437/518 atomic regions from SNP 130871 to 131471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,477 DEBUG Processing 438/518 atomic regions from SNP 131171 to 131771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,657 DEBUG Processing 439/518 atomic regions from SNP 131471 to 132071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,840 DEBUG Processing 440/518 atomic regions from SNP 131771 to 132371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,050 DEBUG Processing 441/518 atomic regions from SNP 132071 to 132671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,232 DEBUG Processing 442/518 atomic regions from SNP 132371 to 132971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,413 DEBUG Processing 443/518 atomic regions from SNP 132671 to 133271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,594 DEBUG Processing 444/518 atomic regions from SNP 132971 to 133571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,791 DEBUG Processing 445/518 atomic regions from SNP 133271 to 133871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,989 DEBUG Processing 446/518 atomic regions from SNP 133571 to 134171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,185 DEBUG Processing 447/518 atomic regions from SNP 133871 to 134471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,373 DEBUG Processing 448/518 atomic regions from SNP 134171 to 134771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,545 DEBUG Processing 449/518 atomic regions from SNP 134471 to 135071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,714 DEBUG Processing 450/518 atomic regions from SNP 134771 to 135371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,886 DEBUG Processing 451/518 atomic regions from SNP 135071 to 135671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,055 DEBUG Processing 452/518 atomic regions from SNP 135371 to 135971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,226 DEBUG Processing 453/518 atomic regions from SNP 135671 to 136271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,396 DEBUG Processing 454/518 atomic regions from SNP 135971 to 136571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,565 DEBUG Processing 455/518 atomic regions from SNP 136271 to 136871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,736 DEBUG Processing 456/518 atomic regions from SNP 136571 to 137171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,909 DEBUG Processing 457/518 atomic regions from SNP 136871 to 137471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,082 DEBUG Processing 458/518 atomic regions from SNP 137171 to 137771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,268 DEBUG Processing 459/518 atomic regions from SNP 137471 to 138071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,470 DEBUG Processing 460/518 atomic regions from SNP 137771 to 138371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,655 DEBUG Processing 461/518 atomic regions from SNP 138071 to 138671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,828 DEBUG Processing 462/518 atomic regions from SNP 138371 to 138971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,000 DEBUG Processing 463/518 atomic regions from SNP 138671 to 139271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,168 DEBUG Processing 464/518 atomic regions from SNP 138971 to 139571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,339 DEBUG Processing 465/518 atomic regions from SNP 139271 to 139871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,513 DEBUG Processing 466/518 atomic regions from SNP 139571 to 140171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,689 DEBUG Processing 467/518 atomic regions from SNP 139871 to 140471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,860 DEBUG Processing 468/518 atomic regions from SNP 140171 to 140771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,037 DEBUG Processing 469/518 atomic regions from SNP 140471 to 141071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,210 DEBUG Processing 470/518 atomic regions from SNP 140771 to 141371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,382 DEBUG Processing 471/518 atomic regions from SNP 141071 to 141671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,555 DEBUG Processing 472/518 atomic regions from SNP 141371 to 141971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,730 DEBUG Processing 473/518 atomic regions from SNP 141671 to 142271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,914 DEBUG Processing 474/518 atomic regions from SNP 141971 to 142571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,108 DEBUG Processing 475/518 atomic regions from SNP 142271 to 142871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,287 DEBUG Processing 476/518 atomic regions from SNP 142571 to 143171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,458 DEBUG Processing 477/518 atomic regions from SNP 142871 to 143471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,630 DEBUG Processing 478/518 atomic regions from SNP 143171 to 143771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,803 DEBUG Processing 479/518 atomic regions from SNP 143471 to 144071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,978 DEBUG Processing 480/518 atomic regions from SNP 143771 to 144371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,154 DEBUG Processing 481/518 atomic regions from SNP 144071 to 144671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,330 DEBUG Processing 482/518 atomic regions from SNP 144371 to 144971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,509 DEBUG Processing 483/518 atomic regions from SNP 144671 to 145271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,682 DEBUG Processing 484/518 atomic regions from SNP 144971 to 145571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,856 DEBUG Processing 485/518 atomic regions from SNP 145271 to 145871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,031 DEBUG Processing 486/518 atomic regions from SNP 145571 to 146171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,209 DEBUG Processing 487/518 atomic regions from SNP 145871 to 146471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,395 DEBUG Processing 488/518 atomic regions from SNP 146171 to 146771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,587 DEBUG Processing 489/518 atomic regions from SNP 146471 to 147071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,763 DEBUG Processing 490/518 atomic regions from SNP 146771 to 147371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,942 DEBUG Processing 491/518 atomic regions from SNP 147071 to 147671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,121 DEBUG Processing 492/518 atomic regions from SNP 147371 to 147971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,298 DEBUG Processing 493/518 atomic regions from SNP 147671 to 148271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,471 DEBUG Processing 494/518 atomic regions from SNP 147971 to 148571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,642 DEBUG Processing 495/518 atomic regions from SNP 148271 to 148871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,810 DEBUG Processing 496/518 atomic regions from SNP 148571 to 149171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,979 DEBUG Processing 497/518 atomic regions from SNP 148871 to 149471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,151 DEBUG Processing 498/518 atomic regions from SNP 149171 to 149771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,329 DEBUG Processing 499/518 atomic regions from SNP 149471 to 150071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,502 DEBUG Processing 500/518 atomic regions from SNP 149771 to 150371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,674 DEBUG Processing 501/518 atomic regions from SNP 150071 to 150671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,846 DEBUG Processing 502/518 atomic regions from SNP 150371 to 150971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,016 DEBUG Processing 503/518 atomic regions from SNP 150671 to 151271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,190 DEBUG Processing 504/518 atomic regions from SNP 150971 to 151571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,369 DEBUG Processing 505/518 atomic regions from SNP 151271 to 151871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,546 DEBUG Processing 506/518 atomic regions from SNP 151571 to 152171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,718 DEBUG Processing 507/518 atomic regions from SNP 151871 to 152471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,894 DEBUG Processing 508/518 atomic regions from SNP 152171 to 152771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,072 DEBUG Processing 509/518 atomic regions from SNP 152471 to 153071 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,248 DEBUG Processing 510/518 atomic regions from SNP 152771 to 153371 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,422 DEBUG Processing 511/518 atomic regions from SNP 153071 to 153671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,597 DEBUG Processing 512/518 atomic regions from SNP 153371 to 153971 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,771 DEBUG Processing 513/518 atomic regions from SNP 153671 to 154271 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,945 DEBUG Processing 514/518 atomic regions from SNP 153971 to 154571 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,119 DEBUG Processing 515/518 atomic regions from SNP 154271 to 154871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,294 DEBUG Processing 516/518 atomic regions from SNP 154571 to 155171 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,469 DEBUG Processing 517/518 atomic regions from SNP 154871 to 155471 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,646 DEBUG Processing 518/518 atomic regions from SNP 155171 to 155771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,764 DEBUG Unique SNPs positions in subchromosome 1: 155772 2025-01-31 09:57:57,454 DEBUG Subchromosome time: 113.97969546692912, subchromosome SNPs: 155772 2025-01-31 09:57:57,454 DEBUG Estimated BADs: [1.10, 0.37, 1.10, 3.30, 0.55, 3.30, 1.10, 0.55, 3.30, 1.10, 3.30, 1.10, 4.39, 1.10, 0.37, 2.20, 1.10, 0.55] SNP counts: [24460, 3277, 26928, 4928, 1640, 1031, 21593, 10812, 593, 6439, 2269, 10250, 844, 7201, 3403, 8309, 12360, 9435] SNP IDs counts: [24460, 3277, 26928, 4928, 1640, 1031, 21593, 10812, 593, 6439, 2269, 10250, 844, 7201, 3403, 8309, 12360, 9435] Critical gap: 509585bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.96Mbp, 19.00Mbp, 34.22Mbp, 36.81Mbp, 37.80Mbp, 38.34Mbp, 50.45Mbp, 56.55Mbp, 56.87Mbp, 60.48Mbp, 61.66Mbp, 67.20Mbp, 67.64Mbp, 71.62Mbp, 73.57Mbp, 78.10Mbp, 84.85Mbp, 90.70Mbp] 2025-01-31 09:57:57,455 DEBUG chr18 time: 113.98023373400792 s 2025-01-31 09:57:57,539 DEBUG chr18: Fitting background model for 18 segments 2025-01-31 09:58:12,228 DEBUG Results of fit_background_model emitted. 2025-01-31 09:58:12,368 INFO Signal to noise fit: SPOT=0.29±0.15 2025-01-31 09:58:12,375 INFO Found 1 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 09:58:12,423 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:58:12,423 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 09:58:18,304 DEBUG chrX: Fitting background model for 1 segments 2025-01-31 09:58:18,554 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 09:58:18,628 INFO Signal to noise fit: SPOT=0.29±0.15 2025-01-31 09:58:18,633 INFO Final SPOT score: 0.29±0.15. Refitted 1 segments. 2025-01-31 09:58:18,679 INFO Estimating per-bp parameters of background model 2025-01-31 09:58:18,686 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:58:18,686 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 09:58:24,156 DEBUG chr5:3004000-5761251: Successfully fit background model for 2,428,361 bp. Use segment r for 0 bp 2025-01-31 09:58:24,725 DEBUG chr3:3000000-8753251: Successfully fit background model for 4,974,682 bp. Use segment r for 0 bp 2025-01-31 09:58:24,883 DEBUG chr3:8753251-10271251: Successfully fit background model for 1,395,563 bp. Use segment r for 0 bp 2025-01-31 09:58:25,255 DEBUG chr2:3051000-7554251: Successfully fit background model for 4,237,929 bp. Use segment r for 0 bp 2025-01-31 09:58:25,737 DEBUG chrX:3055000-7553251: Successfully fit background model for 2,007,061 bp. Use segment r for 30 bp 2025-01-31 09:58:25,788 DEBUG chrX:7553251-7927251: Successfully fit background model for 365,441 bp. Use segment r for 0 bp 2025-01-31 09:58:25,894 DEBUG chr5:5761251-20850251: Successfully fit background model for 12,027,038 bp. Use segment r for 0 bp 2025-01-31 09:58:26,246 DEBUG chr5:20850251-24315251: Successfully fit background model for 3,193,257 bp. Use segment r for 0 bp 2025-01-31 09:58:26,285 DEBUG chr1:3000500-9541251: Successfully fit background model for 5,697,560 bp. Use segment r for 0 bp 2025-01-31 09:58:26,340 DEBUG chr1:9541251-9937751: Successfully fit background model for 382,042 bp. Use segment r for 0 bp 2025-01-31 09:58:26,350 DEBUG chr4:3050000-16481251: Successfully fit background model for 11,779,625 bp. Use segment r for 494 bp 2025-01-31 09:58:26,398 DEBUG chr5:24315251-25539251: Successfully fit background model for 1,173,893 bp. Use segment r for 0 bp 2025-01-31 09:58:26,490 DEBUG chrX:7927251-14081751: Successfully fit background model for 5,421,622 bp. Use segment r for 0 bp 2025-01-31 09:58:26,501 DEBUG chr2:7554251-18019751: Successfully fit background model for 9,459,043 bp. Use segment r for 0 bp 2025-01-31 09:58:26,515 DEBUG chr3:10271251-19143751: Successfully fit background model for 7,461,129 bp. Use segment r for 671 bp 2025-01-31 09:58:26,618 DEBUG chr3:19143751-20002251: Successfully fit background model for 786,303 bp. Use segment r for 0 bp 2025-01-31 09:58:26,692 DEBUG chrX:14081751-16097251: Successfully fit background model for 1,725,512 bp. Use segment r for 0 bp 2025-01-31 09:58:26,940 DEBUG chr5:25539251-30869251: Successfully fit background model for 4,766,562 bp. Use segment r for 0 bp 2025-01-31 09:58:26,990 DEBUG chr5:30869251-31242251: Successfully fit background model for 362,798 bp. Use segment r for 0 bp 2025-01-31 09:58:27,225 DEBUG chr2:18019751-24902751: Successfully fit background model for 6,133,594 bp. Use segment r for 0 bp 2025-01-31 09:58:27,267 DEBUG chrX:16097251-21507751: Successfully fit background model for 4,658,048 bp. Use segment r for 0 bp 2025-01-31 09:58:27,547 DEBUG chr5:31242251-36695251: Successfully fit background model for 5,194,356 bp. Use segment r for 0 bp 2025-01-31 09:58:27,662 DEBUG chr3:20002251-28698751: Successfully fit background model for 7,728,298 bp. Use segment r for 0 bp 2025-01-31 09:58:27,846 DEBUG chr5:36695251-39805001: Successfully fit background model for 2,932,199 bp. Use segment r for 0 bp 2025-01-31 09:58:28,067 DEBUG chrX:21507751-26915001: Successfully fit background model for 2,799,801 bp. Use segment r for 4,497 bp 2025-01-31 09:58:28,539 DEBUG chr5:39805001-46117251: Successfully fit background model for 5,668,259 bp. Use segment r for 0 bp 2025-01-31 09:58:28,596 DEBUG chr2:24902751-36237751: Successfully fit background model for 11,013,757 bp. Use segment r for 0 bp 2025-01-31 09:58:28,692 DEBUG chr2:36237751-36990251: Successfully fit background model for 621,663 bp. Use segment r for 0 bp 2025-01-31 09:58:28,774 DEBUG chr3:28698751-38256251: Successfully fit background model for 8,791,902 bp. Use segment r for 0 bp 2025-01-31 09:58:28,910 DEBUG chr3:38256251-39488251: Successfully fit background model for 1,148,602 bp. Use segment r for 0 bp 2025-01-31 09:58:28,927 DEBUG chr2:36990251-39412751: Successfully fit background model for 2,264,911 bp. Use segment r for 0 bp 2025-01-31 09:58:28,992 DEBUG chr5:46117251-50955251: Successfully fit background model for 4,433,049 bp. Use segment r for 0 bp 2025-01-31 09:58:29,134 DEBUG chr4:16481251-32645251: Successfully fit background model for 14,340,450 bp. Use segment r for 6,208 bp 2025-01-31 09:58:29,156 DEBUG chr3:39488251-41781001: Successfully fit background model for 2,040,420 bp. Use segment r for 0 bp 2025-01-31 09:58:29,194 DEBUG chr1:9937751-33468751: Successfully fit background model for 21,026,668 bp. Use segment r for 0 bp 2025-01-31 09:58:29,233 DEBUG chr4:32645251-33284751: Successfully fit background model for 617,494 bp. Use segment r for 0 bp 2025-01-31 09:58:29,281 DEBUG chrX:31132500-38880751: Successfully fit background model for 2,805,770 bp. Use segment r for 1,848 bp 2025-01-31 09:58:29,317 DEBUG chr5:50955251-54377751: Successfully fit background model for 3,275,488 bp. Use segment r for 0 bp 2025-01-31 09:58:29,333 DEBUG chr2:39412751-43398251: Successfully fit background model for 3,609,838 bp. Use segment r for 0 bp 2025-01-31 09:58:29,386 DEBUG chr4:33284751-34782251: Successfully fit background model for 1,389,724 bp. Use segment r for 0 bp 2025-01-31 09:58:29,863 DEBUG chr1:33468751-39556751: Successfully fit background model for 5,813,145 bp. Use segment r for 0 bp 2025-01-31 09:58:29,960 DEBUG chr4:34782251-40134751: Successfully fit background model for 4,763,161 bp. Use segment r for 0 bp 2025-01-31 09:58:29,968 DEBUG chr3:41781001-48900251: Successfully fit background model for 6,298,333 bp. Use segment r for 0 bp 2025-01-31 09:58:30,138 DEBUG chr4:40134751-41855501: Successfully fit background model for 1,561,554 bp. Use segment r for 0 bp 2025-01-31 09:58:30,182 DEBUG chr4:42736500-43059751: Successfully fit background model for 261,146 bp. Use segment r for 0 bp 2025-01-31 09:58:30,210 DEBUG chr3:48900251-51221751: Successfully fit background model for 2,048,701 bp. Use segment r for 0 bp 2025-01-31 09:58:30,260 DEBUG chrX:38880751-48255751: Successfully fit background model for 8,115,340 bp. Use segment r for 0 bp 2025-01-31 09:58:30,273 DEBUG chr3:51221751-51700251: Successfully fit background model for 458,895 bp. Use segment r for 0 bp 2025-01-31 09:58:30,305 DEBUG chr1:39556751-44097251: Successfully fit background model for 4,340,706 bp. Use segment r for 0 bp 2025-01-31 09:58:30,324 DEBUG chr1:44097251-44165251: Successfully fit background model for 66,297 bp. Use segment r for 0 bp 2025-01-31 09:58:30,496 DEBUG chrX:48255751-50549751: Successfully fit background model for 1,949,375 bp. Use segment r for 0 bp 2025-01-31 09:58:30,498 DEBUG chr2:43398251-53297751: Successfully fit background model for 9,277,278 bp. Use segment r for 0 bp 2025-01-31 09:58:30,515 DEBUG chrX:50549751-50636251: Successfully fit background model for 78,897 bp. Use segment r for 0 bp 2025-01-31 09:58:30,641 DEBUG chr4:43059751-47505751: Successfully fit background model for 4,280,238 bp. Use segment r for 0 bp 2025-01-31 09:58:30,782 DEBUG chr4:47505751-48811751: Successfully fit background model for 1,244,568 bp. Use segment r for 0 bp 2025-01-31 09:58:30,835 DEBUG chr5:54377751-63166251: Successfully fit background model for 7,768,321 bp. Use segment r for 2,854 bp 2025-01-31 09:58:30,869 DEBUG chr2:53297751-57113251: Successfully fit background model for 3,266,478 bp. Use segment r for 0 bp 2025-01-31 09:58:30,928 DEBUG chr2:57113251-57570751: Successfully fit background model for 421,464 bp. Use segment r for 0 bp 2025-01-31 09:58:31,093 DEBUG chr4:48811751-52254751: Successfully fit background model for 3,017,489 bp. Use segment r for 0 bp 2025-01-31 09:58:31,228 DEBUG chr1:44165251-52098251: Successfully fit background model for 6,900,320 bp. Use segment r for 0 bp 2025-01-31 09:58:31,312 DEBUG chr1:52098251-52793251: Successfully fit background model for 643,710 bp. Use segment r for 0 bp 2025-01-31 09:58:31,351 DEBUG chr5:63166251-68434001: Successfully fit background model for 4,970,609 bp. Use segment r for 0 bp 2025-01-31 09:58:31,655 DEBUG chr5:68434001-71564751: Successfully fit background model for 2,741,888 bp. Use segment r for 0 bp 2025-01-31 09:58:31,751 DEBUG chr4:52254751-58910251: Successfully fit background model for 6,238,384 bp. Use segment r for 0 bp 2025-01-31 09:58:31,869 DEBUG chr1:52793251-58389751: Successfully fit background model for 5,157,155 bp. Use segment r for 0 bp 2025-01-31 09:58:32,031 DEBUG chr1:58389751-59881751: Successfully fit background model for 1,404,041 bp. Use segment r for 0 bp 2025-01-31 09:58:32,209 DEBUG chr2:57570751-67862751: Successfully fit background model for 9,564,804 bp. Use segment r for 0 bp 2025-01-31 09:58:32,263 DEBUG chr4:58910251-62531751: Successfully fit background model for 1,780,063 bp. Use segment r for 4,060 bp 2025-01-31 09:58:32,298 DEBUG chr5:71564751-77942251: Successfully fit background model for 6,036,980 bp. Use segment r for 0 bp 2025-01-31 09:58:32,310 DEBUG chr1:59881751-62691251: Successfully fit background model for 2,627,366 bp. Use segment r for 0 bp 2025-01-31 09:58:32,431 DEBUG chr4:62531751-64238251: Successfully fit background model for 1,623,055 bp. Use segment r for 0 bp 2025-01-31 09:58:32,555 DEBUG chr1:62691251-65211251: Successfully fit background model for 2,370,398 bp. Use segment r for 0 bp 2025-01-31 09:58:32,616 DEBUG chr3:51700251-70995751: Successfully fit background model for 17,474,344 bp. Use segment r for 0 bp 2025-01-31 09:58:32,813 DEBUG chr5:77942251-83425251: Successfully fit background model for 4,899,688 bp. Use segment r for 0 bp 2025-01-31 09:58:33,038 DEBUG chr3:70995751-74957751: Successfully fit background model for 3,500,683 bp. Use segment r for 0 bp 2025-01-31 09:58:33,251 DEBUG chr5:83425251-88029751: Successfully fit background model for 4,106,010 bp. Use segment r for 0 bp 2025-01-31 09:58:33,635 DEBUG chr1:65211251-74234251: Successfully fit background model for 8,372,044 bp. Use segment r for 0 bp 2025-01-31 09:58:33,766 DEBUG chr2:67862751-81022751: Successfully fit background model for 12,537,344 bp. Use segment r for 0 bp 2025-01-31 09:58:33,771 DEBUG chr1:74234251-75386251: Successfully fit background model for 1,056,290 bp. Use segment r for 0 bp 2025-01-31 09:58:34,055 DEBUG chr3:74957751-84001751: Successfully fit background model for 8,221,502 bp. Use segment r for 0 bp 2025-01-31 09:58:34,118 DEBUG chr2:81022751-84649251: Successfully fit background model for 3,085,390 bp. Use segment r for 0 bp 2025-01-31 09:58:34,192 DEBUG chr2:84649251-85287251: Successfully fit background model for 607,966 bp. Use segment r for 0 bp 2025-01-31 09:58:34,201 DEBUG chr4:64238251-80511751: Successfully fit background model for 14,407,181 bp. Use segment r for 0 bp 2025-01-31 09:58:34,408 DEBUG chr3:84001751-87745251: Successfully fit background model for 3,565,996 bp. Use segment r for 0 bp 2025-01-31 09:58:34,542 DEBUG chrX:50636251-73408751: Successfully fit background model for 18,486,519 bp. Use segment r for 1,196 bp 2025-01-31 09:58:34,578 DEBUG chr2:85287251-89457251: Successfully fit background model for 3,644,771 bp. Use segment r for 0 bp 2025-01-31 09:58:34,661 DEBUG chr3:87745251-90406251: Successfully fit background model for 2,525,770 bp. Use segment r for 0 bp 2025-01-31 09:58:34,725 DEBUG chr2:89457251-90845251: Successfully fit background model for 1,050,320 bp. Use segment r for 0 bp 2025-01-31 09:58:34,801 DEBUG chrX:73408751-75789251: Successfully fit background model for 1,931,007 bp. Use segment r for 0 bp 2025-01-31 09:58:34,814 DEBUG chr4:80511751-86622251: Successfully fit background model for 5,628,627 bp. Use segment r for 0 bp 2025-01-31 09:58:34,825 DEBUG chr5:88029751-97682751: Successfully fit background model for 6,837,380 bp. Use segment r for 4,553 bp 2025-01-31 09:58:34,871 DEBUG chr2:90845251-92316751: Successfully fit background model for 1,442,234 bp. Use segment r for 0 bp 2025-01-31 09:58:34,886 DEBUG chr1:75386251-84837251: Successfully fit background model for 8,718,388 bp. Use segment r for 0 bp 2025-01-31 09:58:35,046 DEBUG chr1:84837251-86265751: Successfully fit background model for 893,089 bp. Use segment r for 0 bp 2025-01-31 09:58:35,103 DEBUG chr4:86622251-89733251: Successfully fit background model for 2,765,303 bp. Use segment r for 0 bp 2025-01-31 09:58:35,132 DEBUG chr1:86265751-87035751: Successfully fit background model for 726,151 bp. Use segment r for 0 bp 2025-01-31 09:58:35,132 DEBUG chr2:92316751-94846251: Successfully fit background model for 2,433,575 bp. Use segment r for 0 bp 2025-01-31 09:58:35,249 DEBUG chr3:90406251-94359751: Successfully fit background model for 3,042,346 bp. Use segment r for 632 bp 2025-01-31 09:58:35,387 DEBUG chr5:97682751-103652751: Successfully fit background model for 5,622,830 bp. Use segment r for 0 bp 2025-01-31 09:58:35,417 DEBUG chr5:103652751-103833251: Successfully fit background model for 178,695 bp. Use segment r for 0 bp 2025-01-31 09:58:35,479 DEBUG chr3:94359751-96734751: Successfully fit background model for 2,173,766 bp. Use segment r for 0 bp 2025-01-31 09:58:35,776 DEBUG chr2:94846251-101088251: Successfully fit background model for 5,198,204 bp. Use segment r for 0 bp 2025-01-31 09:58:35,821 DEBUG chr1:87035751-93599501: Successfully fit background model for 6,313,004 bp. Use segment r for 0 bp 2025-01-31 09:58:35,846 DEBUG chr3:96734751-100394751: Successfully fit background model for 3,229,344 bp. Use segment r for 0 bp 2025-01-31 09:58:35,860 DEBUG chr1:93599501-93835751: Successfully fit background model for 229,300 bp. Use segment r for 0 bp 2025-01-31 09:58:35,867 DEBUG chr4:89733251-97095751: Successfully fit background model for 6,553,323 bp. Use segment r for 0 bp 2025-01-31 09:58:36,395 DEBUG chr1:93835751-99231751: Successfully fit background model for 4,604,194 bp. Use segment r for 0 bp 2025-01-31 09:58:36,463 DEBUG chr2:101088251-107962251: Successfully fit background model for 6,508,991 bp. Use segment r for 0 bp 2025-01-31 09:58:36,569 DEBUG chr5:103833251-113728751: Successfully fit background model for 9,125,073 bp. Use segment r for 0 bp 2025-01-31 09:58:36,628 DEBUG chrX:75789251-91293751: Successfully fit background model for 13,343,200 bp. Use segment r for 0 bp 2025-01-31 09:58:36,663 DEBUG chrX:91293751-91346001: Successfully fit background model for 28,291 bp. Use segment r for 0 bp 2025-01-31 09:58:36,689 DEBUG chr3:100394751-108012251: Successfully fit background model for 7,202,922 bp. Use segment r for 0 bp 2025-01-31 09:58:36,748 DEBUG chr4:97095751-106559751: Successfully fit background model for 8,901,256 bp. Use segment r for 0 bp 2025-01-31 09:58:36,751 DEBUG chr5:113728751-115470751: Successfully fit background model for 1,694,283 bp. Use segment r for 0 bp 2025-01-31 09:58:36,781 DEBUG chr3:108012251-108798251: Successfully fit background model for 768,635 bp. Use segment r for 0 bp 2025-01-31 09:58:36,874 DEBUG chr1:99231751-104390251: Successfully fit background model for 4,534,133 bp. Use segment r for 0 bp 2025-01-31 09:58:37,099 DEBUG chr4:106559751-110287751: Successfully fit background model for 3,546,763 bp. Use segment r for 0 bp 2025-01-31 09:58:37,274 DEBUG chr1:104390251-108140251: Successfully fit background model for 3,424,278 bp. Use segment r for 0 bp 2025-01-31 09:58:37,274 DEBUG chr5:115470751-120454751: Successfully fit background model for 4,884,651 bp. Use segment r for 0 bp 2025-01-31 09:58:37,291 DEBUG chr4:110287751-112073251: Successfully fit background model for 1,571,266 bp. Use segment r for 0 bp 2025-01-31 09:58:37,486 DEBUG chr4:112073251-113963251: Successfully fit background model for 1,654,918 bp. Use segment r for 0 bp 2025-01-31 09:58:37,536 DEBUG chr3:108798251-115711251: Successfully fit background model for 5,947,674 bp. Use segment r for 0 bp 2025-01-31 09:58:37,632 DEBUG chr2:107962251-118473251: Successfully fit background model for 9,602,216 bp. Use segment r for 0 bp 2025-01-31 09:58:37,637 DEBUG chr3:115711251-116643251: Successfully fit background model for 894,320 bp. Use segment r for 0 bp 2025-01-31 09:58:37,670 DEBUG chr4:113963251-115819751: Successfully fit background model for 1,593,929 bp. Use segment r for 0 bp 2025-01-31 09:58:37,701 DEBUG chr2:118473251-118903751: Successfully fit background model for 416,235 bp. Use segment r for 0 bp 2025-01-31 09:58:37,734 DEBUG chr5:120454751-125347751: Successfully fit background model for 4,674,196 bp. Use segment r for 0 bp 2025-01-31 09:58:37,920 DEBUG chrX:91346001-101252251: Successfully fit background model for 8,387,080 bp. Use segment r for 0 bp 2025-01-31 09:58:37,998 DEBUG chr4:115819751-119202751: Successfully fit background model for 3,229,920 bp. Use segment r for 0 bp 2025-01-31 09:58:38,037 DEBUG chr3:116643251-121157751: Successfully fit background model for 4,170,893 bp. Use segment r for 0 bp 2025-01-31 09:58:38,135 DEBUG chr5:125347751-129712251: Successfully fit background model for 4,173,723 bp. Use segment r for 0 bp 2025-01-31 09:58:38,143 DEBUG chr2:118903751-122953501: Successfully fit background model for 3,847,436 bp. Use segment r for 0 bp 2025-01-31 09:58:38,193 DEBUG chr5:129712251-130132751: Successfully fit background model for 360,115 bp. Use segment r for 0 bp 2025-01-31 09:58:38,235 DEBUG chr3:121157751-123259251: Successfully fit background model for 2,042,758 bp. Use segment r for 0 bp 2025-01-31 09:58:38,241 DEBUG chr2:122953501-123852251: Successfully fit background model for 807,268 bp. Use segment r for 0 bp 2025-01-31 09:58:38,395 DEBUG chrX:101252251-105961251: Successfully fit background model for 4,153,952 bp. Use segment r for 0 bp 2025-01-31 09:58:38,508 DEBUG chr1:108140251-118310251: Successfully fit background model for 8,850,554 bp. Use segment r for 0 bp 2025-01-31 09:58:38,532 DEBUG chr2:123852251-126996751: Successfully fit background model for 2,953,100 bp. Use segment r for 0 bp 2025-01-31 09:58:38,619 DEBUG chr5:130132751-134136751: Successfully fit background model for 3,839,472 bp. Use segment r for 0 bp 2025-01-31 09:58:38,626 DEBUG chr3:123259251-127161251: Successfully fit background model for 3,586,475 bp. Use segment r for 0 bp 2025-01-31 09:58:38,694 DEBUG chr1:118310251-120055251: Successfully fit background model for 1,696,066 bp. Use segment r for 0 bp 2025-01-31 09:58:38,927 DEBUG chr2:126996751-131146251: Successfully fit background model for 3,990,864 bp. Use segment r for 0 bp 2025-01-31 09:58:38,962 DEBUG chr3:127161251-130751751: Successfully fit background model for 3,401,998 bp. Use segment r for 0 bp 2025-01-31 09:58:39,039 DEBUG chr1:120055251-123352251: Successfully fit background model for 3,063,939 bp. Use segment r for 0 bp 2025-01-31 09:58:39,242 DEBUG chr1:123352251-125428251: Successfully fit background model for 1,906,483 bp. Use segment r for 0 bp 2025-01-31 09:58:39,375 DEBUG chr3:130751751-135269251: Successfully fit background model for 4,050,999 bp. Use segment r for 0 bp 2025-01-31 09:58:39,450 DEBUG chr4:119202751-132047251: Successfully fit background model for 11,504,594 bp. Use segment r for 0 bp 2025-01-31 09:58:39,552 DEBUG chr3:135269251-137148251: Successfully fit background model for 1,779,276 bp. Use segment r for 0 bp 2025-01-31 09:58:39,712 DEBUG chr5:134136751-143974251: Successfully fit background model for 9,298,575 bp. Use segment r for 0 bp 2025-01-31 09:58:39,737 DEBUG chr2:131146251-138431251: Successfully fit background model for 6,839,220 bp. Use segment r for 0 bp 2025-01-31 09:58:39,755 DEBUG chr3:137148251-139203751: Successfully fit background model for 1,925,708 bp. Use segment r for 0 bp 2025-01-31 09:58:39,819 DEBUG chr1:125428251-131042251: Successfully fit background model for 5,242,045 bp. Use segment r for 0 bp 2025-01-31 09:58:39,846 DEBUG chr4:132047251-136213251: Successfully fit background model for 4,051,443 bp. Use segment r for 0 bp 2025-01-31 09:58:40,135 DEBUG chr3:139203751-141919251: Successfully fit background model for 2,461,413 bp. Use segment r for 8,824 bp 2025-01-31 09:58:40,328 DEBUG chr1:131042251-136399251: Successfully fit background model for 5,225,432 bp. Use segment r for 0 bp 2025-01-31 09:58:40,377 DEBUG chr4:136213251-141722251: Successfully fit background model for 5,394,284 bp. Use segment r for 0 bp 2025-01-31 09:58:40,489 DEBUG chr5:143974251-151834684: Successfully fit background model for 7,171,847 bp. Use segment r for 0 bp 2025-01-31 09:58:40,547 DEBUG chr4:141722251-143485251: Successfully fit background model for 1,696,389 bp. Use segment r for 0 bp 2025-01-31 09:58:40,630 DEBUG chr3:141919251-147085501: Successfully fit background model for 4,908,799 bp. Use segment r for 0 bp 2025-01-31 09:58:40,638 DEBUG chr1:136399251-139538751: Successfully fit background model for 2,943,228 bp. Use segment r for 0 bp 2025-01-31 09:58:40,701 DEBUG chr4:143485251-144889751: Successfully fit background model for 1,015,884 bp. Use segment r for 0 bp 2025-01-31 09:58:40,941 DEBUG chr1:139538751-142794751: Successfully fit background model for 2,789,209 bp. Use segment r for 0 bp 2025-01-31 09:58:41,022 DEBUG chr3:147085501-151465501: Successfully fit background model for 4,145,949 bp. Use segment r for 0 bp 2025-01-31 09:58:41,051 DEBUG chr2:138431251-150765751: Successfully fit background model for 11,391,247 bp. Use segment r for 0 bp 2025-01-31 09:58:41,105 DEBUG chr1:142794751-144429751: Successfully fit background model for 1,382,216 bp. Use segment r for 0 bp 2025-01-31 09:58:41,375 DEBUG chr3:151465501-154962251: Successfully fit background model for 3,306,344 bp. Use segment r for 0 bp 2025-01-31 09:58:41,596 DEBUG chr1:144429751-149119251: Successfully fit background model for 4,122,812 bp. Use segment r for 0 bp 2025-01-31 09:58:41,614 DEBUG chrX:105961251-124247501: Successfully fit background model for 14,710,298 bp. Use segment r for 11,813 bp 2025-01-31 09:58:41,678 DEBUG chr2:150765751-157467751: Successfully fit background model for 6,166,677 bp. Use segment r for 0 bp 2025-01-31 09:58:41,881 DEBUG chr3:154962251-160039680: Successfully fit background model for 4,461,793 bp. Use segment r for 0 bp 2025-01-31 09:58:42,218 DEBUG chr1:149119251-154997251: Successfully fit background model for 5,504,797 bp. Use segment r for 0 bp 2025-01-31 09:58:42,231 DEBUG chr2:157467751-163447251: Successfully fit background model for 5,731,017 bp. Use segment r for 0 bp 2025-01-31 09:58:42,351 DEBUG chrX:126004000-134039001: Successfully fit background model for 6,919,787 bp. Use segment r for 0 bp 2025-01-31 09:58:42,408 DEBUG chr1:154997251-156838251: Successfully fit background model for 1,733,214 bp. Use segment r for 0 bp 2025-01-31 09:58:42,439 DEBUG chr4:144889751-154821251: Successfully fit background model for 8,024,074 bp. Use segment r for 3,495 bp 2025-01-31 09:58:42,564 DEBUG chr2:163447251-166974251: Successfully fit background model for 3,395,699 bp. Use segment r for 0 bp 2025-01-31 09:58:42,615 DEBUG chr4:154821251-156508116: Successfully fit background model for 1,397,718 bp. Use segment r for 0 bp 2025-01-31 09:58:42,681 DEBUG chr2:166974251-168077751: Successfully fit background model for 1,063,936 bp. Use segment r for 0 bp 2025-01-31 09:58:42,747 DEBUG chr1:156838251-160193251: Successfully fit background model for 3,202,090 bp. Use segment r for 0 bp 2025-01-31 09:58:42,989 DEBUG chr1:160193251-162529751: Successfully fit background model for 2,204,517 bp. Use segment r for 0 bp 2025-01-31 09:58:43,208 DEBUG chr2:168077751-172995751: Successfully fit background model for 4,777,940 bp. Use segment r for 0 bp 2025-01-31 09:58:43,228 DEBUG chr2:172995751-173084251: Successfully fit background model for 86,813 bp. Use segment r for 0 bp 2025-01-31 09:58:43,234 DEBUG chr1:162529751-165091751: Successfully fit background model for 2,383,068 bp. Use segment r for 0 bp 2025-01-31 09:58:43,329 DEBUG chr1:165091751-165961251: Successfully fit background model for 815,453 bp. Use segment r for 0 bp 2025-01-31 09:58:43,448 DEBUG chr1:165961251-167220251: Successfully fit background model for 1,115,983 bp. Use segment r for 0 bp 2025-01-31 09:58:43,470 DEBUG chr1:167220251-167394751: Successfully fit background model for 171,614 bp. Use segment r for 0 bp 2025-01-31 09:58:43,472 DEBUG chr2:173084251-175179001: Successfully fit background model for 1,894,076 bp. Use segment r for 0 bp 2025-01-31 09:58:43,845 DEBUG chr1:167394751-171028251: Successfully fit background model for 3,424,114 bp. Use segment r for 0 bp 2025-01-31 09:58:43,902 DEBUG chr1:171028251-171413251: Successfully fit background model for 358,068 bp. Use segment r for 0 bp 2025-01-31 09:58:43,963 DEBUG chr2:176705500-179816751: Successfully fit background model for 1,921,934 bp. Use segment r for 1,432 bp 2025-01-31 09:58:44,202 DEBUG chr2:179816751-182113224: Successfully fit background model for 2,106,974 bp. Use segment r for 0 bp 2025-01-31 09:58:44,702 DEBUG chr1:171413251-178301751: Successfully fit background model for 6,237,761 bp. Use segment r for 0 bp 2025-01-31 09:58:44,934 DEBUG chr1:178301751-180636751: Successfully fit background model for 2,250,607 bp. Use segment r for 0 bp 2025-01-31 09:58:45,019 DEBUG chr1:180636751-181267251: Successfully fit background model for 610,668 bp. Use segment r for 0 bp 2025-01-31 09:58:45,455 DEBUG chr1:181267251-185424751: Successfully fit background model for 3,875,985 bp. Use segment r for 0 bp 2025-01-31 09:58:45,478 DEBUG chr1:185424751-185517751: Successfully fit background model for 92,172 bp. Use segment r for 0 bp 2025-01-31 09:58:46,052 DEBUG chr1:185517751-190753251: Successfully fit background model for 5,039,186 bp. Use segment r for 0 bp 2025-01-31 09:58:46,177 DEBUG chr1:190753251-191941751: Successfully fit background model for 1,144,727 bp. Use segment r for 0 bp 2025-01-31 09:58:46,587 DEBUG chr1:191941751-195471971: Successfully fit background model for 3,177,164 bp. Use segment r for 0 bp 2025-01-31 09:58:48,932 DEBUG chrX:134039001-162265751: Successfully fit background model for 22,738,387 bp. Use segment r for 4,181 bp 2025-01-31 09:58:49,169 DEBUG chrX:162265751-164373251: Successfully fit background model for 1,942,083 bp. Use segment r for 0 bp 2025-01-31 09:58:49,802 DEBUG chrX:164373251-169971501: Successfully fit background model for 5,099,037 bp. Use segment r for 0 bp 2025-01-31 09:58:49,915 DEBUG chrX:169971501-171031299: Successfully fit background model for 5,730 bp. Use segment r for 0 bp 2025-01-31 10:00:15,573 DEBUG chr6:3050000-9588251: Successfully fit background model for 5,808,083 bp. Use segment r for 0 bp 2025-01-31 10:00:17,628 DEBUG chr6:9588251-28383251: Successfully fit background model for 16,656,380 bp. Use segment r for 0 bp 2025-01-31 10:00:18,220 DEBUG chr6:28383251-34861751: Successfully fit background model for 6,187,004 bp. Use segment r for 0 bp 2025-01-31 10:00:18,394 DEBUG chr7:3004000-4444751: Successfully fit background model for 1,027,323 bp. Use segment r for 7,752 bp 2025-01-31 10:00:18,461 DEBUG chr7:4444751-5100751: Successfully fit background model for 613,584 bp. Use segment r for 0 bp 2025-01-31 10:00:18,525 DEBUG chr7:5100751-5740251: Successfully fit background model for 468,449 bp. Use segment r for 0 bp 2025-01-31 10:00:18,587 DEBUG chr6:34861751-38512251: Successfully fit background model for 3,399,757 bp. Use segment r for 0 bp 2025-01-31 10:00:18,673 DEBUG chr7:5740251-7300751: Successfully fit background model for 1,315,608 bp. Use segment r for 0 bp 2025-01-31 10:00:18,691 DEBUG chr6:38512251-39420501: Successfully fit background model for 892,147 bp. Use segment r for 0 bp 2025-01-31 10:00:19,166 DEBUG chr6:39420501-44311001: Successfully fit background model for 4,369,142 bp. Use segment r for 0 bp 2025-01-31 10:00:19,430 DEBUG chr6:44311001-47172251: Successfully fit background model for 2,561,829 bp. Use segment r for 0 bp 2025-01-31 10:00:19,536 DEBUG chr7:7300751-12897251: Successfully fit background model for 2,157,838 bp. Use segment r for 10,169 bp 2025-01-31 10:00:19,563 DEBUG chr7:12897251-13064751: Successfully fit background model for 160,048 bp. Use segment r for 0 bp 2025-01-31 10:00:19,622 DEBUG chr6:47172251-49197751: Successfully fit background model for 1,768,794 bp. Use segment r for 0 bp 2025-01-31 10:00:19,993 DEBUG chr7:13064751-15894251: Successfully fit background model for 1,744,412 bp. Use segment r for 155 bp 2025-01-31 10:00:20,115 DEBUG chr7:15894251-17095751: Successfully fit background model for 1,165,459 bp. Use segment r for 0 bp 2025-01-31 10:00:20,396 DEBUG chr7:17095751-18998751: Successfully fit background model for 1,359,014 bp. Use segment r for 9,479 bp 2025-01-31 10:00:20,507 DEBUG chr7:18998751-20102001: Successfully fit background model for 1,029,627 bp. Use segment r for 0 bp 2025-01-31 10:00:20,562 DEBUG chr6:49197751-57691251: Successfully fit background model for 8,038,502 bp. Use segment r for 0 bp 2025-01-31 10:00:20,725 DEBUG chr7:22771000-24286751: Successfully fit background model for 827,972 bp. Use segment r for 8,321 bp 2025-01-31 10:00:20,884 DEBUG chr7:24286751-25932751: Successfully fit background model for 1,546,616 bp. Use segment r for 0 bp 2025-01-31 10:00:21,001 DEBUG chr7:25932751-27153251: Successfully fit background model for 953,981 bp. Use segment r for 0 bp 2025-01-31 10:00:21,368 DEBUG chr7:27153251-31002751: Successfully fit background model for 3,619,952 bp. Use segment r for 0 bp 2025-01-31 10:00:21,761 DEBUG chr7:31002751-33743751: Successfully fit background model for 1,162,113 bp. Use segment r for 6,029 bp 2025-01-31 10:00:22,212 DEBUG chr7:33743751-38272751: Successfully fit background model for 4,351,368 bp. Use segment r for 0 bp 2025-01-31 10:00:22,750 DEBUG chr6:57691251-70751751: Successfully fit background model for 11,282,970 bp. Use segment r for 441 bp 2025-01-31 10:00:22,936 DEBUG chr6:70751751-72523251: Successfully fit background model for 1,709,351 bp. Use segment r for 0 bp 2025-01-31 10:00:23,015 DEBUG chr7:38272751-43905251: Successfully fit background model for 4,100,271 bp. Use segment r for 911 bp 2025-01-31 10:00:23,108 DEBUG chr6:72523251-74384001: Successfully fit background model for 1,705,324 bp. Use segment r for 0 bp 2025-01-31 10:00:23,108 DEBUG chr7:43905251-44812751: Successfully fit background model for 851,707 bp. Use segment r for 0 bp 2025-01-31 10:00:23,161 DEBUG chr10:3101500-31787251: Successfully fit background model for 26,095,727 bp. Use segment r for 0 bp 2025-01-31 10:00:23,205 DEBUG chr7:44812751-45682751: Successfully fit background model for 853,915 bp. Use segment r for 0 bp 2025-01-31 10:00:23,352 DEBUG chr7:45682751-47148751: Successfully fit background model for 1,436,234 bp. Use segment r for 0 bp 2025-01-31 10:00:23,477 DEBUG chr7:47148751-48462251: Successfully fit background model for 1,050,112 bp. Use segment r for 0 bp 2025-01-31 10:00:23,570 DEBUG chr6:74384001-79582251: Successfully fit background model for 4,677,513 bp. Use segment r for 0 bp 2025-01-31 10:00:23,620 DEBUG chr7:48462251-49957751: Successfully fit background model for 1,420,914 bp. Use segment r for 0 bp 2025-01-31 10:00:23,821 DEBUG chr10:31787251-38241751: Successfully fit background model for 5,829,348 bp. Use segment r for 0 bp 2025-01-31 10:00:23,826 DEBUG chr7:49957751-52094001: Successfully fit background model for 1,871,860 bp. Use segment r for 0 bp 2025-01-31 10:00:23,908 DEBUG chr6:79582251-82995751: Successfully fit background model for 3,109,040 bp. Use segment r for 0 bp 2025-01-31 10:00:24,006 DEBUG chr10:38241751-40124751: Successfully fit background model for 1,733,143 bp. Use segment r for 0 bp 2025-01-31 10:00:24,139 DEBUG chr7:52094001-55395001: Successfully fit background model for 2,906,906 bp. Use segment r for 0 bp 2025-01-31 10:00:24,207 DEBUG chr6:82995751-86360751: Successfully fit background model for 3,159,814 bp. Use segment r for 0 bp 2025-01-31 10:00:24,259 DEBUG chr7:55395001-56647751: Successfully fit background model for 1,093,013 bp. Use segment r for 0 bp 2025-01-31 10:00:24,325 DEBUG chr10:40124751-43478251: Successfully fit background model for 3,217,994 bp. Use segment r for 0 bp 2025-01-31 10:00:24,645 DEBUG chr10:43478251-46983251: Successfully fit background model for 3,248,887 bp. Use segment r for 0 bp 2025-01-31 10:00:24,722 DEBUG chr6:86360751-91872251: Successfully fit background model for 5,231,031 bp. Use segment r for 0 bp 2025-01-31 10:00:24,918 DEBUG chr10:46983251-49980251: Successfully fit background model for 2,623,517 bp. Use segment r for 0 bp 2025-01-31 10:00:25,332 DEBUG chr7:56647751-63882251: Successfully fit background model for 5,999,194 bp. Use segment r for 235 bp 2025-01-31 10:00:25,752 DEBUG chr10:49980251-58299251: Successfully fit background model for 7,093,068 bp. Use segment r for 0 bp 2025-01-31 10:00:25,793 DEBUG chr7:63882251-68982251: Successfully fit background model for 4,847,003 bp. Use segment r for 0 bp 2025-01-31 10:00:26,050 DEBUG chr6:91872251-103866251: Successfully fit background model for 11,323,950 bp. Use segment r for 0 bp 2025-01-31 10:00:26,218 DEBUG chr7:68982251-73515751: Successfully fit background model for 4,230,061 bp. Use segment r for 0 bp 2025-01-31 10:00:26,270 DEBUG chr10:58299251-64126251: Successfully fit background model for 5,581,355 bp. Use segment r for 0 bp 2025-01-31 10:00:26,492 DEBUG chr7:73515751-76522751: Successfully fit background model for 2,761,059 bp. Use segment r for 0 bp 2025-01-31 10:00:26,507 DEBUG chr10:64126251-65805751: Successfully fit background model for 1,460,169 bp. Use segment r for 79,903 bp 2025-01-31 10:00:26,623 DEBUG chr7:76522751-77740251: Successfully fit background model for 1,115,167 bp. Use segment r for 0 bp 2025-01-31 10:00:26,786 DEBUG chr7:77740251-79239751: Successfully fit background model for 1,438,198 bp. Use segment r for 0 bp 2025-01-31 10:00:26,957 DEBUG chr7:79239751-80980751: Successfully fit background model for 1,696,532 bp. Use segment r for 0 bp 2025-01-31 10:00:27,042 DEBUG chr6:103866251-112836751: Successfully fit background model for 8,122,574 bp. Use segment r for 0 bp 2025-01-31 10:00:27,134 DEBUG chr6:112836751-113601251: Successfully fit background model for 749,419 bp. Use segment r for 0 bp 2025-01-31 10:00:27,376 DEBUG chr7:80980751-84898251: Successfully fit background model for 3,688,304 bp. Use segment r for 0 bp 2025-01-31 10:00:27,617 DEBUG chr10:65805751-75562751: Successfully fit background model for 9,051,968 bp. Use segment r for 0 bp 2025-01-31 10:00:27,709 DEBUG chr7:84898251-88549251: Successfully fit background model for 3,243,926 bp. Use segment r for 0 bp 2025-01-31 10:00:27,901 DEBUG chr7:88549251-90597251: Successfully fit background model for 1,863,869 bp. Use segment r for 0 bp 2025-01-31 10:00:27,996 DEBUG chr10:75562751-79643751: Successfully fit background model for 3,787,864 bp. Use segment r for 0 bp 2025-01-31 10:00:28,157 DEBUG chr7:90597251-93167251: Successfully fit background model for 2,382,489 bp. Use segment r for 0 bp 2025-01-31 10:00:28,189 DEBUG chr10:79643751-81655751: Successfully fit background model for 1,976,871 bp. Use segment r for 0 bp 2025-01-31 10:00:28,365 DEBUG chr7:93167251-95346001: Successfully fit background model for 1,928,671 bp. Use segment r for 0 bp 2025-01-31 10:00:28,419 DEBUG chr6:113601251-124645501: Successfully fit background model for 9,879,581 bp. Use segment r for 0 bp 2025-01-31 10:00:28,501 DEBUG chr6:124645501-125253251: Successfully fit background model for 582,498 bp. Use segment r for 0 bp 2025-01-31 10:00:28,624 DEBUG chr7:95346001-98058751: Successfully fit background model for 2,561,888 bp. Use segment r for 0 bp 2025-01-31 10:00:28,997 DEBUG chr6:125253251-129939251: Successfully fit background model for 4,416,006 bp. Use segment r for 0 bp 2025-01-31 10:00:29,146 DEBUG chr7:98058751-103128001: Successfully fit background model for 4,878,665 bp. Use segment r for 0 bp 2025-01-31 10:00:29,322 DEBUG chr6:129939251-132690251: Successfully fit background model for 2,213,760 bp. Use segment r for 0 bp 2025-01-31 10:00:29,930 DEBUG chr7:103128001-108378251: Successfully fit background model for 4,127,209 bp. Use segment r for 5,120 bp 2025-01-31 10:00:30,539 DEBUG chr10:81655751-100914251: Successfully fit background model for 17,692,069 bp. Use segment r for 0 bp 2025-01-31 10:00:30,992 DEBUG chr10:100914251-104914751: Successfully fit background model for 3,578,615 bp. Use segment r for 0 bp 2025-01-31 10:00:31,742 DEBUG chr6:132690251-149736546: Successfully fit background model for 15,707,211 bp. Use segment r for 0 bp 2025-01-31 10:00:32,304 DEBUG chr8:3072000-4680751: Successfully fit background model for 1,414,295 bp. Use segment r for 0 bp 2025-01-31 10:00:32,648 DEBUG chr7:108378251-126198751: Successfully fit background model for 16,966,401 bp. Use segment r for 0 bp 2025-01-31 10:00:32,704 DEBUG chr10:104914751-117021751: Successfully fit background model for 11,283,559 bp. Use segment r for 0 bp 2025-01-31 10:00:32,795 DEBUG chr8:4680751-9596251: Successfully fit background model for 4,443,527 bp. Use segment r for 0 bp 2025-01-31 10:00:32,867 DEBUG chr7:126198751-128231751: Successfully fit background model for 1,955,849 bp. Use segment r for 0 bp 2025-01-31 10:00:33,457 DEBUG chr10:117021751-124152751: Successfully fit background model for 6,659,149 bp. Use segment r for 0 bp 2025-01-31 10:00:33,718 DEBUG chr10:124152751-126894251: Successfully fit background model for 2,549,241 bp. Use segment r for 0 bp 2025-01-31 10:00:33,899 DEBUG chr10:126894251-128790251: Successfully fit background model for 1,841,111 bp. Use segment r for 0 bp 2025-01-31 10:00:33,979 DEBUG chr10:128790251-129380751: Successfully fit background model for 495,692 bp. Use segment r for 0 bp 2025-01-31 10:00:34,109 DEBUG chr10:129380751-130694993: Successfully fit background model for 1,018,389 bp. Use segment r for 0 bp 2025-01-31 10:00:34,857 DEBUG chr7:128231751-140804251: Successfully fit background model for 12,006,244 bp. Use segment r for 0 bp 2025-01-31 10:00:34,967 DEBUG chr7:140804251-141662251: Successfully fit background model for 838,134 bp. Use segment r for 0 bp 2025-01-31 10:00:35,415 DEBUG chr7:141662251-145441459: Successfully fit background model for 3,511,824 bp. Use segment r for 0 bp 2025-01-31 10:00:37,909 DEBUG chr8:9596251-29202751: Successfully fit background model for 16,826,636 bp. Use segment r for 37,752 bp 2025-01-31 10:00:38,045 DEBUG chr8:29202751-30331751: Successfully fit background model for 964,154 bp. Use segment r for 0 bp 2025-01-31 10:00:38,761 DEBUG chr8:30331751-36841251: Successfully fit background model for 6,107,000 bp. Use segment r for 0 bp 2025-01-31 10:00:38,837 DEBUG chr14:3006500-5126501: Successfully fit background model for 72,938 bp. Use segment r for 1,833 bp 2025-01-31 10:00:39,665 DEBUG chr8:36841251-43522251: Successfully fit background model for 5,959,221 bp. Use segment r for 0 bp 2025-01-31 10:00:40,250 DEBUG chr8:43522251-49848251: Successfully fit background model for 5,916,023 bp. Use segment r for 0 bp 2025-01-31 10:00:40,577 DEBUG chr8:49848251-53111751: Successfully fit background model for 2,940,187 bp. Use segment r for 0 bp 2025-01-31 10:00:42,206 DEBUG chr14:5841000-19699751: Successfully fit background model for 10,937,268 bp. Use segment r for 10,336 bp 2025-01-31 10:00:42,425 DEBUG chr14:19699751-21854251: Successfully fit background model for 2,084,824 bp. Use segment r for 0 bp 2025-01-31 10:00:43,423 DEBUG chr14:21854251-29842251: Successfully fit background model for 7,213,395 bp. Use segment r for 0 bp 2025-01-31 10:00:43,911 DEBUG chr14:29842251-35243751: Successfully fit background model for 5,213,068 bp. Use segment r for 0 bp 2025-01-31 10:00:44,104 DEBUG chr14:35243751-37317251: Successfully fit background model for 1,881,582 bp. Use segment r for 0 bp 2025-01-31 10:00:44,432 DEBUG chr14:37317251-40903751: Successfully fit background model for 3,206,494 bp. Use segment r for 0 bp 2025-01-31 10:00:45,160 DEBUG chr8:53111751-69789251: Successfully fit background model for 14,549,125 bp. Use segment r for 17,844 bp 2025-01-31 10:00:45,321 DEBUG chr8:69789251-70908501: Successfully fit background model for 1,102,390 bp. Use segment r for 0 bp 2025-01-31 10:00:45,503 DEBUG chr8:70908501-72488751: Successfully fit background model for 1,331,838 bp. Use segment r for 0 bp 2025-01-31 10:00:47,289 DEBUG chr14:40903751-50784751: Successfully fit background model for 6,599,366 bp. Use segment r for 21,194 bp 2025-01-31 10:00:47,649 DEBUG chr8:72488751-83565751: Successfully fit background model for 10,054,865 bp. Use segment r for 0 bp 2025-01-31 10:00:47,818 DEBUG chr14:50784751-54359251: Successfully fit background model for 2,555,481 bp. Use segment r for 93 bp 2025-01-31 10:00:47,831 DEBUG chr8:83565751-85093251: Successfully fit background model for 1,499,355 bp. Use segment r for 0 bp 2025-01-31 10:00:47,958 DEBUG chr14:54359251-55621751: Successfully fit background model for 1,208,626 bp. Use segment r for 0 bp 2025-01-31 10:00:49,743 DEBUG chr9:3002500-20633751: Successfully fit background model for 15,547,110 bp. Use segment r for 0 bp 2025-01-31 10:00:49,941 DEBUG chr9:20633751-22370251: Successfully fit background model for 1,671,502 bp. Use segment r for 0 bp 2025-01-31 10:00:50,093 DEBUG chr8:85093251-93940751: Successfully fit background model for 8,448,575 bp. Use segment r for 0 bp 2025-01-31 10:00:50,305 DEBUG chr9:22370251-25743751: Successfully fit background model for 3,104,549 bp. Use segment r for 0 bp 2025-01-31 10:00:50,347 DEBUG chr14:55621751-71159751: Successfully fit background model for 14,360,558 bp. Use segment r for 0 bp 2025-01-31 10:00:50,643 DEBUG chr14:71159751-74232251: Successfully fit background model for 2,809,975 bp. Use segment r for 0 bp 2025-01-31 10:00:50,892 DEBUG chr8:93940751-96510751: Successfully fit background model for 2,435,474 bp. Use segment r for 0 bp 2025-01-31 10:00:51,001 DEBUG chr14:74232251-76971251: Successfully fit background model for 2,624,404 bp. Use segment r for 0 bp 2025-01-31 10:00:51,414 DEBUG chr14:76971251-79287251: Successfully fit background model for 2,180,560 bp. Use segment r for 0 bp 2025-01-31 10:00:51,465 DEBUG chr9:25743751-34982751: Successfully fit background model for 8,770,452 bp. Use segment r for 0 bp 2025-01-31 10:00:51,560 DEBUG chr14:79287251-80081751: Successfully fit background model for 748,527 bp. Use segment r for 0 bp 2025-01-31 10:00:51,741 DEBUG chr8:96510751-102361251: Successfully fit background model for 5,335,236 bp. Use segment r for 0 bp 2025-01-31 10:00:51,799 DEBUG chr9:34982751-37903251: Successfully fit background model for 2,625,336 bp. Use segment r for 0 bp 2025-01-31 10:00:52,071 DEBUG chr8:102361251-104533751: Successfully fit background model for 2,064,186 bp. Use segment r for 0 bp 2025-01-31 10:00:52,170 DEBUG chr9:37903251-39856751: Successfully fit background model for 1,752,877 bp. Use segment r for 0 bp 2025-01-31 10:00:52,337 DEBUG chr8:104533751-107291751: Successfully fit background model for 2,579,359 bp. Use segment r for 0 bp 2025-01-31 10:00:52,716 DEBUG chr9:39856751-44067001: Successfully fit background model for 4,066,613 bp. Use segment r for 0 bp 2025-01-31 10:00:52,785 DEBUG chr9:44067001-44707251: Successfully fit background model for 613,197 bp. Use segment r for 0 bp 2025-01-31 10:00:52,805 DEBUG chr8:107291751-110844751: Successfully fit background model for 3,456,194 bp. Use segment r for 0 bp 2025-01-31 10:00:53,013 DEBUG chr14:80081751-85905751: Successfully fit background model for 5,207,400 bp. Use segment r for 0 bp 2025-01-31 10:00:53,096 DEBUG chr8:110844751-111741251: Successfully fit background model for 870,174 bp. Use segment r for 0 bp 2025-01-31 10:00:53,557 DEBUG chr14:85905751-88710251: Successfully fit background model for 2,531,814 bp. Use segment r for 0 bp 2025-01-31 10:00:54,089 DEBUG chr9:44707251-56876751: Successfully fit background model for 11,627,741 bp. Use segment r for 0 bp 2025-01-31 10:00:54,630 DEBUG chr8:111741251-116865751: Successfully fit background model for 4,652,175 bp. Use segment r for 285,446 bp 2025-01-31 10:00:54,744 DEBUG chr9:56876751-63692251: Successfully fit background model for 6,626,741 bp. Use segment r for 0 bp 2025-01-31 10:00:55,016 DEBUG chr8:116865751-119342751: Successfully fit background model for 2,404,570 bp. Use segment r for 0 bp 2025-01-31 10:00:55,038 DEBUG chr9:63692251-66880751: Successfully fit background model for 3,108,546 bp. Use segment r for 0 bp 2025-01-31 10:00:55,198 DEBUG chr14:88710251-97306251: Successfully fit background model for 7,815,255 bp. Use segment r for 0 bp 2025-01-31 10:00:55,912 DEBUG chr8:119342751-123967251: Successfully fit background model for 4,423,590 bp. Use segment r for 0 bp 2025-01-31 10:00:56,305 DEBUG chr8:123967251-126558751: Successfully fit background model for 2,501,344 bp. Use segment r for 0 bp 2025-01-31 10:00:56,791 DEBUG chr8:126558751-129401213: Successfully fit background model for 2,548,033 bp. Use segment r for 0 bp 2025-01-31 10:00:56,962 DEBUG chr9:66880751-79018251: Successfully fit background model for 11,459,239 bp. Use segment r for 0 bp 2025-01-31 10:00:57,043 DEBUG chr14:97306251-106837251: Successfully fit background model for 8,789,144 bp. Use segment r for 0 bp 2025-01-31 10:00:57,816 DEBUG chr14:106837251-113698001: Successfully fit background model for 6,196,119 bp. Use segment r for 0 bp 2025-01-31 10:00:58,619 DEBUG chr9:79018251-90541751: Successfully fit background model for 10,071,740 bp. Use segment r for 0 bp 2025-01-31 10:00:58,632 DEBUG chr14:113698001-121261251: Successfully fit background model for 6,983,227 bp. Use segment r for 0 bp 2025-01-31 10:00:58,715 DEBUG chr14:121261251-121988251: Successfully fit background model for 714,403 bp. Use segment r for 0 bp 2025-01-31 10:00:58,938 DEBUG chr9:90541751-93910501: Successfully fit background model for 2,996,249 bp. Use segment r for 0 bp 2025-01-31 10:00:58,974 DEBUG chr14:121988251-124902244: Successfully fit background model for 2,439,447 bp. Use segment r for 0 bp 2025-01-31 10:01:00,742 DEBUG chr9:93910501-106155251: Successfully fit background model for 11,673,318 bp. Use segment r for 0 bp 2025-01-31 10:01:01,392 DEBUG chr9:106155251-110616501: Successfully fit background model for 4,107,915 bp. Use segment r for 545 bp 2025-01-31 10:01:02,661 DEBUG chr9:110616501-119319251: Successfully fit background model for 8,226,063 bp. Use segment r for 0 bp 2025-01-31 10:01:03,398 DEBUG chr9:119319251-124595110: Successfully fit background model for 4,730,803 bp. Use segment r for 2,350 bp 2025-01-31 10:01:50,746 DEBUG chr11:3100500-3203251: Successfully fit background model for 75,714 bp. Use segment r for 0 bp 2025-01-31 10:01:51,075 DEBUG chr11:3203251-6714751: Successfully fit background model for 3,376,744 bp. Use segment r for 0 bp 2025-01-31 10:01:51,614 DEBUG chr11:6714751-12535751: Successfully fit background model for 5,240,801 bp. Use segment r for 0 bp 2025-01-31 10:01:52,176 DEBUG chr11:12535751-18698251: Successfully fit background model for 5,485,748 bp. Use segment r for 0 bp 2025-01-31 10:01:52,745 DEBUG chr11:18698251-24443001: Successfully fit background model for 5,426,043 bp. Use segment r for 0 bp 2025-01-31 10:01:53,121 DEBUG chr11:24443001-28626751: Successfully fit background model for 3,741,121 bp. Use segment r for 0 bp 2025-01-31 10:01:53,904 DEBUG chr11:28626751-36483751: Successfully fit background model for 7,310,957 bp. Use segment r for 0 bp 2025-01-31 10:01:54,612 DEBUG chr11:36483751-44398251: Successfully fit background model for 7,364,097 bp. Use segment r for 0 bp 2025-01-31 10:01:54,997 DEBUG chr11:44398251-48771751: Successfully fit background model for 4,037,179 bp. Use segment r for 0 bp 2025-01-31 10:01:55,018 DEBUG chr11:48771751-48875751: Successfully fit background model for 101,029 bp. Use segment r for 0 bp 2025-01-31 10:01:55,777 DEBUG chr11:48875751-56051751: Successfully fit background model for 6,744,389 bp. Use segment r for 0 bp 2025-01-31 10:01:55,917 DEBUG chr11:56051751-57516251: Successfully fit background model for 1,361,747 bp. Use segment r for 0 bp 2025-01-31 10:01:56,458 DEBUG chr11:57516251-62536251: Successfully fit background model for 4,763,026 bp. Use segment r for 0 bp 2025-01-31 10:01:57,035 DEBUG chr11:62536251-68965751: Successfully fit background model for 6,204,405 bp. Use segment r for 0 bp 2025-01-31 10:01:57,216 DEBUG chr11:68965751-70670251: Successfully fit background model for 1,665,045 bp. Use segment r for 0 bp 2025-01-31 10:01:57,452 DEBUG chr11:70670251-73309751: Successfully fit background model for 2,498,743 bp. Use segment r for 0 bp 2025-01-31 10:01:57,590 DEBUG chr11:73309751-74825251: Successfully fit background model for 1,319,622 bp. Use segment r for 0 bp 2025-01-31 10:01:57,602 DEBUG chr11:74825251-74900751: Successfully fit background model for 67,792 bp. Use segment r for 0 bp 2025-01-31 10:01:57,924 DEBUG chr11:74900751-78338751: Successfully fit background model for 3,336,351 bp. Use segment r for 0 bp 2025-01-31 10:01:58,494 DEBUG chr11:78338751-84561251: Successfully fit background model for 5,979,633 bp. Use segment r for 0 bp 2025-01-31 10:01:58,904 DEBUG chr13:3000500-4703751: Successfully fit background model for 1,447,215 bp. Use segment r for 0 bp 2025-01-31 10:01:58,941 DEBUG chr11:84561251-89570751: Successfully fit background model for 4,852,916 bp. Use segment r for 0 bp 2025-01-31 10:01:59,280 DEBUG chr13:4703751-8770251: Successfully fit background model for 3,601,865 bp. Use segment r for 0 bp 2025-01-31 10:01:59,335 DEBUG chr11:89570751-94127501: Successfully fit background model for 4,257,956 bp. Use segment r for 0 bp 2025-01-31 10:01:59,577 DEBUG chr11:94127501-96819251: Successfully fit background model for 2,628,472 bp. Use segment r for 0 bp 2025-01-31 10:01:59,763 DEBUG chr11:96819251-98849751: Successfully fit background model for 1,984,880 bp. Use segment r for 0 bp 2025-01-31 10:01:59,905 DEBUG chr11:98849751-100279751: Successfully fit background model for 1,353,378 bp. Use segment r for 0 bp 2025-01-31 10:02:00,174 DEBUG chr11:100279751-103074251: Successfully fit background model for 2,735,179 bp. Use segment r for 0 bp 2025-01-31 10:02:00,601 DEBUG chr13:8770251-21159001: Successfully fit background model for 10,876,352 bp. Use segment r for 0 bp 2025-01-31 10:02:00,670 DEBUG chr13:21159001-21709751: Successfully fit background model for 513,136 bp. Use segment r for 0 bp 2025-01-31 10:02:00,716 DEBUG chr13:21709751-22052251: Successfully fit background model for 286,979 bp. Use segment r for 0 bp 2025-01-31 10:02:00,842 DEBUG chr13:22052251-23284251: Successfully fit background model for 925,483 bp. Use segment r for 0 bp 2025-01-31 10:02:00,882 DEBUG chr11:103074251-110634751: Successfully fit background model for 7,264,518 bp. Use segment r for 0 bp 2025-01-31 10:02:00,894 DEBUG chr13:23284251-23774251: Successfully fit background model for 454,728 bp. Use segment r for 0 bp 2025-01-31 10:02:00,988 DEBUG chr13:23774251-24759251: Successfully fit background model for 946,251 bp. Use segment r for 0 bp 2025-01-31 10:02:01,070 DEBUG chr11:110634751-112447751: Successfully fit background model for 1,726,509 bp. Use segment r for 0 bp 2025-01-31 10:02:01,159 DEBUG chr13:24759251-26455751: Successfully fit background model for 1,553,944 bp. Use segment r for 0 bp 2025-01-31 10:02:01,274 DEBUG chr13:26455751-27708251: Successfully fit background model for 1,112,624 bp. Use segment r for 0 bp 2025-01-31 10:02:01,321 DEBUG chr11:112447751-115162251: Successfully fit background model for 2,621,306 bp. Use segment r for 0 bp 2025-01-31 10:02:01,473 DEBUG chr11:115162251-116803251: Successfully fit background model for 1,578,397 bp. Use segment r for 0 bp 2025-01-31 10:02:01,999 DEBUG chr11:116803251-122082543: Successfully fit background model for 5,026,308 bp. Use segment r for 0 bp 2025-01-31 10:02:03,626 DEBUG chr13:27708251-48833751: Successfully fit background model for 19,807,770 bp. Use segment r for 0 bp 2025-01-31 10:02:03,702 DEBUG chr13:48833751-49296251: Successfully fit background model for 454,936 bp. Use segment r for 0 bp 2025-01-31 10:02:04,133 DEBUG chr12:3000500-5421251: Successfully fit background model for 2,226,998 bp. Use segment r for 0 bp 2025-01-31 10:02:04,202 DEBUG chr13:49296251-54439751: Successfully fit background model for 4,537,313 bp. Use segment r for 0 bp 2025-01-31 10:02:04,304 DEBUG chr13:54439751-55506251: Successfully fit background model for 1,027,544 bp. Use segment r for 0 bp 2025-01-31 10:02:04,554 DEBUG chr13:55506251-58103751: Successfully fit background model for 2,538,303 bp. Use segment r for 0 bp 2025-01-31 10:02:04,807 DEBUG chr13:58103751-60896751: Successfully fit background model for 2,672,769 bp. Use segment r for 0 bp 2025-01-31 10:02:05,177 DEBUG chr13:60896751-63429751: Successfully fit background model for 1,965,611 bp. Use segment r for 29,692 bp 2025-01-31 10:02:05,250 DEBUG chr13:63429751-64178251: Successfully fit background model for 725,012 bp. Use segment r for 0 bp 2025-01-31 10:02:05,389 DEBUG chr12:5421251-16802751: Successfully fit background model for 10,388,760 bp. Use segment r for 0 bp 2025-01-31 10:02:05,558 DEBUG chr12:16802751-18439251: Successfully fit background model for 1,345,250 bp. Use segment r for 0 bp 2025-01-31 10:02:06,473 DEBUG chr12:18439251-24562251: Successfully fit background model for 1,953,575 bp. Use segment r for 6,137 bp 2025-01-31 10:02:06,516 DEBUG chr12:24562251-24907251: Successfully fit background model for 330,206 bp. Use segment r for 0 bp 2025-01-31 10:02:06,815 DEBUG chr13:64178251-73248751: Successfully fit background model for 6,976,685 bp. Use segment r for 3,755 bp 2025-01-31 10:02:06,892 DEBUG chr13:73248751-73933751: Successfully fit background model for 672,724 bp. Use segment r for 0 bp 2025-01-31 10:02:07,154 DEBUG chr15:3050500-5112751: Successfully fit background model for 1,756,628 bp. Use segment r for 0 bp 2025-01-31 10:02:07,201 DEBUG chr12:24907251-31942751: Successfully fit background model for 6,691,968 bp. Use segment r for 0 bp 2025-01-31 10:02:07,319 DEBUG chr12:31942751-33109751: Successfully fit background model for 1,085,295 bp. Use segment r for 0 bp 2025-01-31 10:02:07,480 DEBUG chr13:73933751-78212751: Successfully fit background model for 3,782,646 bp. Use segment r for 35,097 bp 2025-01-31 10:02:07,715 DEBUG chr13:78212751-80881751: Successfully fit background model for 2,396,777 bp. Use segment r for 0 bp 2025-01-31 10:02:07,850 DEBUG chr13:80881751-82385751: Successfully fit background model for 1,384,686 bp. Use segment r for 0 bp 2025-01-31 10:02:07,988 DEBUG chr15:5112751-13426751: Successfully fit background model for 7,657,836 bp. Use segment r for 0 bp 2025-01-31 10:02:08,149 DEBUG chr13:82385751-85447251: Successfully fit background model for 2,805,807 bp. Use segment r for 0 bp 2025-01-31 10:02:08,446 DEBUG chr13:85447251-88761251: Successfully fit background model for 2,861,402 bp. Use segment r for 0 bp 2025-01-31 10:02:09,233 DEBUG chr13:88761251-96932751: Successfully fit background model for 7,676,348 bp. Use segment r for 0 bp 2025-01-31 10:02:09,424 DEBUG chr15:13426751-27303751: Successfully fit background model for 12,461,695 bp. Use segment r for 0 bp 2025-01-31 10:02:09,464 DEBUG chr15:27303751-27483251: Successfully fit background model for 163,435 bp. Use segment r for 0 bp 2025-01-31 10:02:09,645 DEBUG chr13:96932751-101686251: Successfully fit background model for 4,457,416 bp. Use segment r for 0 bp 2025-01-31 10:02:09,829 DEBUG chr15:27483251-31244751: Successfully fit background model for 3,433,775 bp. Use segment r for 0 bp 2025-01-31 10:02:10,265 DEBUG chr15:31244751-36127751: Successfully fit background model for 4,404,455 bp. Use segment r for 0 bp 2025-01-31 10:02:10,344 DEBUG chr15:36127751-36898751: Successfully fit background model for 736,433 bp. Use segment r for 0 bp 2025-01-31 10:02:10,416 DEBUG chr12:33109751-51549751: Successfully fit background model for 16,562,296 bp. Use segment r for 139,948 bp 2025-01-31 10:02:10,470 DEBUG chr15:36898751-38266251: Successfully fit background model for 1,298,524 bp. Use segment r for 0 bp 2025-01-31 10:02:10,499 DEBUG chr15:38266251-38527751: Successfully fit background model for 250,384 bp. Use segment r for 0 bp 2025-01-31 10:02:10,660 DEBUG chr13:101686251-111684251: Successfully fit background model for 9,286,927 bp. Use segment r for 0 bp 2025-01-31 10:02:10,771 DEBUG chr13:111684251-112731751: Successfully fit background model for 1,011,241 bp. Use segment r for 0 bp 2025-01-31 10:02:11,004 DEBUG chr13:112731751-115316251: Successfully fit background model for 2,450,861 bp. Use segment r for 0 bp 2025-01-31 10:02:11,129 DEBUG chr15:38527751-45081251: Successfully fit background model for 5,881,492 bp. Use segment r for 0 bp 2025-01-31 10:02:11,348 DEBUG chr12:51549751-60322751: Successfully fit background model for 7,919,561 bp. Use segment r for 0 bp 2025-01-31 10:02:11,395 DEBUG chr13:115316251-119426251: Successfully fit background model for 3,755,531 bp. Use segment r for 0 bp 2025-01-31 10:02:11,543 DEBUG chr13:119426251-120421639: Successfully fit background model for 395,733 bp. Use segment r for 7,713 bp 2025-01-31 10:02:11,673 DEBUG chr12:60322751-63836251: Successfully fit background model for 3,081,742 bp. Use segment r for 0 bp 2025-01-31 10:02:11,766 DEBUG chr15:45081251-51731751: Successfully fit background model for 6,003,750 bp. Use segment r for 0 bp 2025-01-31 10:02:12,189 DEBUG chr12:63836251-69147251: Successfully fit background model for 4,789,490 bp. Use segment r for 0 bp 2025-01-31 10:02:12,308 DEBUG chr15:51731751-57804251: Successfully fit background model for 5,537,566 bp. Use segment r for 0 bp 2025-01-31 10:02:12,431 DEBUG chr15:57804251-58987251: Successfully fit background model for 1,148,233 bp. Use segment r for 0 bp 2025-01-31 10:02:12,516 DEBUG chr12:69147251-72645751: Successfully fit background model for 3,336,021 bp. Use segment r for 0 bp 2025-01-31 10:02:12,850 DEBUG chr12:72645751-76168751: Successfully fit background model for 3,358,898 bp. Use segment r for 0 bp 2025-01-31 10:02:12,933 DEBUG chr12:76168751-76885251: Successfully fit background model for 673,676 bp. Use segment r for 0 bp 2025-01-31 10:02:13,214 DEBUG chr12:76885251-79877751: Successfully fit background model for 2,808,336 bp. Use segment r for 0 bp 2025-01-31 10:02:13,571 DEBUG chr15:58987251-69385251: Successfully fit background model for 9,511,429 bp. Use segment r for 0 bp 2025-01-31 10:02:14,016 DEBUG chr12:79877751-86761751: Successfully fit background model for 6,588,840 bp. Use segment r for 0 bp 2025-01-31 10:02:14,069 DEBUG chr15:69385251-72793251: Successfully fit background model for 3,145,275 bp. Use segment r for 0 bp 2025-01-31 10:02:14,074 DEBUG chr12:86761751-87265251: Successfully fit background model for 493,201 bp. Use segment r for 0 bp 2025-01-31 10:02:14,405 DEBUG chr15:72793251-75641251: Successfully fit background model for 2,671,786 bp. Use segment r for 0 bp 2025-01-31 10:02:14,509 DEBUG chr12:87265251-92357251: Successfully fit background model for 4,334,175 bp. Use segment r for 0 bp 2025-01-31 10:02:14,983 DEBUG chr12:92357251-97348501: Successfully fit background model for 4,491,444 bp. Use segment r for 0 bp 2025-01-31 10:02:15,071 DEBUG chr15:75641251-82380751: Successfully fit background model for 6,452,001 bp. Use segment r for 0 bp 2025-01-31 10:02:15,155 DEBUG chr12:97348501-99229251: Successfully fit background model for 1,737,644 bp. Use segment r for 0 bp 2025-01-31 10:02:15,322 DEBUG chr12:99229251-101087751: Successfully fit background model for 1,803,110 bp. Use segment r for 0 bp 2025-01-31 10:02:15,386 DEBUG chr15:82380751-85802751: Successfully fit background model for 3,261,645 bp. Use segment r for 0 bp 2025-01-31 10:02:15,675 DEBUG chr15:85802751-88729251: Successfully fit background model for 2,844,907 bp. Use segment r for 0 bp 2025-01-31 10:02:15,676 DEBUG chr12:101087751-104933251: Successfully fit background model for 3,536,824 bp. Use segment r for 0 bp 2025-01-31 10:02:15,701 DEBUG chr12:104933251-105064251: Successfully fit background model for 128,259 bp. Use segment r for 0 bp 2025-01-31 10:02:15,744 DEBUG chr15:88729251-89252251: Successfully fit background model for 498,880 bp. Use segment r for 0 bp 2025-01-31 10:02:16,221 DEBUG chr12:105064251-110414251: Successfully fit background model for 5,169,430 bp. Use segment r for 0 bp 2025-01-31 10:02:16,481 DEBUG chr12:110414251-113226751: Successfully fit background model for 2,732,493 bp. Use segment r for 0 bp 2025-01-31 10:02:16,776 DEBUG chr12:113226751-116258251: Successfully fit background model for 2,500,099 bp. Use segment r for 0 bp 2025-01-31 10:02:16,784 DEBUG chr15:89252251-98502751: Successfully fit background model for 8,738,978 bp. Use segment r for 0 bp 2025-01-31 10:02:16,853 DEBUG chr15:98502751-99082751: Successfully fit background model for 562,399 bp. Use segment r for 0 bp 2025-01-31 10:02:16,963 DEBUG chr12:116258251-118348751: Successfully fit background model for 1,981,070 bp. Use segment r for 0 bp 2025-01-31 10:02:17,146 DEBUG chr12:118348751-120129022: Successfully fit background model for 1,493,292 bp. Use segment r for 0 bp 2025-01-31 10:02:17,256 DEBUG chr15:99082751-103370251: Successfully fit background model for 4,151,609 bp. Use segment r for 0 bp 2025-01-31 10:02:17,330 DEBUG chr15:103370251-104043685: Successfully fit background model for 426,654 bp. Use segment r for 0 bp 2025-01-31 10:02:21,617 DEBUG chr16:3092500-5588251: Successfully fit background model for 2,052,231 bp. Use segment r for 309 bp 2025-01-31 10:02:21,960 DEBUG chr16:5588251-8397251: Successfully fit background model for 2,670,818 bp. Use segment r for 0 bp 2025-01-31 10:02:22,854 DEBUG chr16:8397251-14461251: Successfully fit background model for 5,738,064 bp. Use segment r for 0 bp 2025-01-31 10:02:23,096 DEBUG chr16:14461251-17068751: Successfully fit background model for 2,282,210 bp. Use segment r for 0 bp 2025-01-31 10:02:23,289 DEBUG chr16:17068751-18993751: Successfully fit background model for 1,854,626 bp. Use segment r for 0 bp 2025-01-31 10:02:23,427 DEBUG chr16:18993751-20496251: Successfully fit background model for 1,275,552 bp. Use segment r for 0 bp 2025-01-31 10:02:23,452 DEBUG chr16:20496251-20723251: Successfully fit background model for 215,800 bp. Use segment r for 0 bp 2025-01-31 10:02:23,679 DEBUG chr16:20723251-23254251: Successfully fit background model for 2,385,438 bp. Use segment r for 0 bp 2025-01-31 10:02:23,714 DEBUG chr17:3000000-16040251: Successfully fit background model for 11,001,082 bp. Use segment r for 0 bp 2025-01-31 10:02:24,146 DEBUG chr16:23254251-27739001: Successfully fit background model for 4,213,456 bp. Use segment r for 0 bp 2025-01-31 10:02:24,462 DEBUG chr16:27739001-31352251: Successfully fit background model for 3,436,622 bp. Use segment r for 0 bp 2025-01-31 10:02:24,574 DEBUG chr17:16040251-23531751: Successfully fit background model for 6,161,852 bp. Use segment r for 0 bp 2025-01-31 10:02:25,138 DEBUG chr17:23531751-29373751: Successfully fit background model for 5,654,203 bp. Use segment r for 0 bp 2025-01-31 10:02:25,156 DEBUG chr16:31352251-38940251: Successfully fit background model for 7,238,068 bp. Use segment r for 0 bp 2025-01-31 10:02:25,555 DEBUG chr17:29373751-33803751: Successfully fit background model for 4,151,779 bp. Use segment r for 0 bp 2025-01-31 10:02:25,775 DEBUG chr17:33803751-35998251: Successfully fit background model for 2,007,638 bp. Use segment r for 0 bp 2025-01-31 10:02:25,906 DEBUG chr17:35998251-37066251: Successfully fit background model for 922,214 bp. Use segment r for 0 bp 2025-01-31 10:02:26,435 DEBUG chr17:37066251-42481001: Successfully fit background model for 4,595,907 bp. Use segment r for 0 bp 2025-01-31 10:02:26,517 DEBUG chr16:38940251-52276251: Successfully fit background model for 12,233,008 bp. Use segment r for 0 bp 2025-01-31 10:02:26,695 DEBUG chr17:42481001-45431751: Successfully fit background model for 2,818,524 bp. Use segment r for 0 bp 2025-01-31 10:02:26,842 DEBUG chr16:52276251-55821251: Successfully fit background model for 3,169,857 bp. Use segment r for 0 bp 2025-01-31 10:02:27,039 DEBUG chr17:45431751-48606251: Successfully fit background model for 3,072,753 bp. Use segment r for 0 bp 2025-01-31 10:02:27,312 DEBUG chr16:55821251-58801251: Successfully fit background model for 2,675,548 bp. Use segment r for 0 bp 2025-01-31 10:02:27,666 DEBUG chr16:58801251-62266501: Successfully fit background model for 3,045,873 bp. Use segment r for 0 bp 2025-01-31 10:02:28,378 DEBUG chr17:48606251-55930251: Successfully fit background model for 6,686,457 bp. Use segment r for 0 bp 2025-01-31 10:02:28,658 DEBUG chr17:55930251-57337251: Successfully fit background model for 1,379,543 bp. Use segment r for 0 bp 2025-01-31 10:02:29,776 DEBUG chr17:57337251-65848751: Successfully fit background model for 7,757,105 bp. Use segment r for 0 bp 2025-01-31 10:02:30,815 DEBUG chr17:65848751-76075251: Successfully fit background model for 9,625,787 bp. Use segment r for 0 bp 2025-01-31 10:02:30,980 DEBUG chr17:76075251-77644251: Successfully fit background model for 1,455,249 bp. Use segment r for 0 bp 2025-01-31 10:02:32,349 DEBUG chr17:77644251-89624751: Successfully fit background model for 11,355,035 bp. Use segment r for 0 bp 2025-01-31 10:02:32,856 DEBUG chr17:89624751-94987271: Successfully fit background model for 4,758,656 bp. Use segment r for 0 bp 2025-01-31 10:02:34,320 DEBUG chr16:62266501-87688251: Successfully fit background model for 23,106,599 bp. Use segment r for 0 bp 2025-01-31 10:02:34,556 DEBUG chr16:87688251-90003251: Successfully fit background model for 2,155,814 bp. Use segment r for 0 bp 2025-01-31 10:02:34,992 DEBUG chr16:90003251-94447251: Successfully fit background model for 4,310,418 bp. Use segment r for 0 bp 2025-01-31 10:02:35,311 DEBUG chr16:94447251-98207768: Successfully fit background model for 3,501,375 bp. Use segment r for 0 bp 2025-01-31 10:03:15,216 DEBUG chr18:3000500-16957751: Successfully fit background model for 12,695,758 bp. Use segment r for 0 bp 2025-01-31 10:03:15,427 DEBUG chr18:16957751-18996251: Successfully fit background model for 1,794,621 bp. Use segment r for 0 bp 2025-01-31 10:03:17,862 DEBUG chr18:18996251-34220251: Successfully fit background model for 14,045,151 bp. Use segment r for 0 bp 2025-01-31 10:03:17,957 DEBUG chr19:3091000-7620251: Successfully fit background model for 4,234,355 bp. Use segment r for 0 bp 2025-01-31 10:03:18,028 DEBUG chr19:7620251-8239501: Successfully fit background model for 463,570 bp. Use segment r for 0 bp 2025-01-31 10:03:18,127 DEBUG chr18:34220251-36807251: Successfully fit background model for 2,527,512 bp. Use segment r for 0 bp 2025-01-31 10:03:18,239 DEBUG chr18:36807251-37801751: Successfully fit background model for 863,508 bp. Use segment r for 0 bp 2025-01-31 10:03:18,295 DEBUG chr18:37801751-38340251: Successfully fit background model for 530,069 bp. Use segment r for 0 bp 2025-01-31 10:03:18,319 DEBUG chr19:8239501-10986251: Successfully fit background model for 2,303,665 bp. Use segment r for 0 bp 2025-01-31 10:03:18,768 DEBUG chr19:10986251-15563251: Successfully fit background model for 4,149,681 bp. Use segment r for 0 bp 2025-01-31 10:03:18,948 DEBUG chr19:15563251-17414251: Successfully fit background model for 1,771,155 bp. Use segment r for 0 bp 2025-01-31 10:03:19,465 DEBUG chr19:17414251-23129501: Successfully fit background model for 5,328,546 bp. Use segment r for 0 bp 2025-01-31 10:03:19,490 DEBUG chr19:23129501-23233751: Successfully fit background model for 102,459 bp. Use segment r for 0 bp 2025-01-31 10:03:19,713 DEBUG chr19:23233751-25162751: Successfully fit background model for 1,867,660 bp. Use segment r for 0 bp 2025-01-31 10:03:20,039 DEBUG chr19:25162751-28440751: Successfully fit background model for 3,113,254 bp. Use segment r for 0 bp 2025-01-31 10:03:20,159 DEBUG chr18:38340251-50448251: Successfully fit background model for 11,215,183 bp. Use segment r for 0 bp 2025-01-31 10:03:20,542 DEBUG chr19:28440751-33318251: Successfully fit background model for 4,662,655 bp. Use segment r for 0 bp 2025-01-31 10:03:20,765 DEBUG chr19:33318251-35677001: Successfully fit background model for 2,058,083 bp. Use segment r for 0 bp 2025-01-31 10:03:20,886 DEBUG chr18:50448251-56552751: Successfully fit background model for 5,641,119 bp. Use segment r for 0 bp 2025-01-31 10:03:20,929 DEBUG chr18:56552751-56867751: Successfully fit background model for 303,737 bp. Use segment r for 0 bp 2025-01-31 10:03:21,333 DEBUG chr18:56867751-60481751: Successfully fit background model for 3,356,167 bp. Use segment r for 0 bp 2025-01-31 10:03:21,470 DEBUG chr18:60481751-61660751: Successfully fit background model for 1,155,511 bp. Use segment r for 0 bp 2025-01-31 10:03:22,049 DEBUG chr18:61660751-67196751: Successfully fit background model for 5,288,926 bp. Use segment r for 0 bp 2025-01-31 10:03:22,079 DEBUG chr19:35677001-44245751: Successfully fit background model for 7,992,636 bp. Use segment r for 0 bp 2025-01-31 10:03:22,104 DEBUG chr18:67196751-67641251: Successfully fit background model for 436,603 bp. Use segment r for 0 bp 2025-01-31 10:03:22,322 DEBUG chr19:44245751-46752251: Successfully fit background model for 2,432,997 bp. Use segment r for 0 bp 2025-01-31 10:03:22,495 DEBUG chr18:67641251-71622251: Successfully fit background model for 3,728,677 bp. Use segment r for 0 bp 2025-01-31 10:03:22,569 DEBUG chr19:46752251-49330751: Successfully fit background model for 2,474,040 bp. Use segment r for 0 bp 2025-01-31 10:03:22,679 DEBUG chr18:71622251-73571251: Successfully fit background model for 1,789,609 bp. Use segment r for 0 bp 2025-01-31 10:03:22,881 DEBUG chr19:49330751-52274251: Successfully fit background model for 2,707,910 bp. Use segment r for 0 bp 2025-01-31 10:03:23,141 DEBUG chr18:73571251-78095751: Successfully fit background model for 4,251,868 bp. Use segment r for 0 bp 2025-01-31 10:03:23,792 DEBUG chr18:78095751-84846251: Successfully fit background model for 6,372,119 bp. Use segment r for 0 bp 2025-01-31 10:03:23,906 DEBUG chr19:52274251-61431566: Successfully fit background model for 8,682,412 bp. Use segment r for 0 bp 2025-01-31 10:03:24,376 DEBUG chr18:84846251-90702639: Successfully fit background model for 4,984,047 bp. Use segment r for 0 bp 2025-01-31 10:04:30,290 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:04:30,292 INFO Calculating per-bp p-values 2025-01-31 10:04:30,293 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:04:30,337 DEBUG chr1: Calculating p-values 2025-01-31 10:04:30,340 DEBUG chr3: Calculating p-values 2025-01-31 10:04:30,341 DEBUG chr2: Calculating p-values 2025-01-31 10:04:30,342 DEBUG chr5: Calculating p-values 2025-01-31 10:04:30,342 DEBUG chrX: Calculating p-values 2025-01-31 10:04:30,342 DEBUG chr4: Calculating p-values 2025-01-31 10:04:58,723 DEBUG Saving p-values for chrX 2025-01-31 10:05:01,654 DEBUG Saving p-values for chr3 2025-01-31 10:05:02,985 DEBUG Saving p-values for chr4 2025-01-31 10:05:04,468 DEBUG Saving p-values for chr5 2025-01-31 10:05:09,983 DEBUG Saving p-values for chr2 2025-01-31 10:05:18,764 DEBUG Saving p-values for chr1 2025-01-31 10:05:26,144 DEBUG chr6: Calculating p-values 2025-01-31 10:05:32,812 DEBUG chr7: Calculating p-values 2025-01-31 10:05:33,614 DEBUG chr10: Calculating p-values 2025-01-31 10:05:35,259 DEBUG chr8: Calculating p-values 2025-01-31 10:05:47,731 DEBUG chr14: Calculating p-values 2025-01-31 10:05:53,022 DEBUG Saving p-values for chr6 2025-01-31 10:05:53,174 DEBUG chr9: Calculating p-values 2025-01-31 10:05:59,713 DEBUG Saving p-values for chr10 2025-01-31 10:06:02,960 DEBUG Saving p-values for chr8 2025-01-31 10:06:03,701 DEBUG Saving p-values for chr7 2025-01-31 10:06:09,259 DEBUG Saving p-values for chr14 2025-01-31 10:06:20,704 DEBUG chr11: Calculating p-values 2025-01-31 10:06:21,613 DEBUG chr13: Calculating p-values 2025-01-31 10:06:22,619 DEBUG Saving p-values for chr9 2025-01-31 10:06:29,692 DEBUG chr12: Calculating p-values 2025-01-31 10:06:30,854 DEBUG chr15: Calculating p-values 2025-01-31 10:06:33,696 DEBUG chr16: Calculating p-values 2025-01-31 10:06:46,657 DEBUG chr17: Calculating p-values 2025-01-31 10:06:54,145 DEBUG Saving p-values for chr11 2025-01-31 10:06:54,362 DEBUG Saving p-values for chr12 2025-01-31 10:06:54,998 DEBUG Saving p-values for chr13 2025-01-31 10:06:57,522 DEBUG Saving p-values for chr16 2025-01-31 10:07:01,756 DEBUG Saving p-values for chr15 2025-01-31 10:07:09,062 DEBUG Saving p-values for chr17 2025-01-31 10:07:14,557 DEBUG chrY: Calculating p-values 2025-01-31 10:07:14,750 DEBUG chr18: Calculating p-values 2025-01-31 10:07:16,965 DEBUG chr19: Calculating p-values 2025-01-31 10:07:27,079 DEBUG Saving p-values for chr18 2025-01-31 10:07:29,265 DEBUG Saving p-values for chr19 2025-01-31 10:07:43,373 DEBUG Results of calc_pvals emitted. 2025-01-31 10:07:43,373 INFO Converting threshold values to bigwig 2025-01-31 10:07:43,373 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:08:00,017 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:08:31,064 INFO Converting background quantile values to bigwig 2025-01-31 10:08:31,065 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:09:05,232 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:09:34,873 INFO Calculating per-bp FDRs 2025-01-31 10:09:34,875 DEBUG AG81958: Extracting raw P-values 2025-01-31 10:10:14,605 DEBUG AG81958: Computing FDR 2025-01-31 10:10:33,591 DEBUG AG81958: Saving FDRs to parquet 2025-01-31 10:11:37,231 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:11:37,234 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:11:37,234 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:11:40,342 DEBUG chr5: Calling hotspots 2025-01-31 10:11:40,474 DEBUG chr4: Calling hotspots 2025-01-31 10:11:40,548 DEBUG chrX: Calling hotspots 2025-01-31 10:11:40,694 DEBUG chr3: Calling hotspots 2025-01-31 10:11:40,827 DEBUG chr2: Calling hotspots 2025-01-31 10:11:41,106 DEBUG chr1: Calling hotspots 2025-01-31 10:11:46,330 DEBUG chr5: 5012 hotspots called 2025-01-31 10:11:46,689 DEBUG chr4: 5102 hotspots called 2025-01-31 10:11:47,408 DEBUG chr3: 3863 hotspots called 2025-01-31 10:11:47,523 DEBUG chrX: 2358 hotspots called 2025-01-31 10:11:48,098 DEBUG chr2: 6235 hotspots called 2025-01-31 10:11:48,531 DEBUG chr1: 5452 hotspots called 2025-01-31 10:11:49,374 DEBUG chr7: Calling hotspots 2025-01-31 10:11:49,459 DEBUG chr6: Calling hotspots 2025-01-31 10:11:50,005 DEBUG chr10: Calling hotspots 2025-01-31 10:11:50,289 DEBUG chr8: Calling hotspots 2025-01-31 10:11:50,677 DEBUG chr9: Calling hotspots 2025-01-31 10:11:50,787 DEBUG chr14: Calling hotspots 2025-01-31 10:11:55,466 DEBUG chr7: 4958 hotspots called 2025-01-31 10:11:55,837 DEBUG chr8: 3803 hotspots called 2025-01-31 10:11:55,853 DEBUG chr6: 3811 hotspots called 2025-01-31 10:11:55,882 DEBUG chr9: 4215 hotspots called 2025-01-31 10:11:55,927 DEBUG chr10: 3843 hotspots called 2025-01-31 10:11:56,048 DEBUG chr14: 2567 hotspots called 2025-01-31 10:11:57,743 DEBUG chr11: Calling hotspots 2025-01-31 10:11:58,008 DEBUG chr16: Calling hotspots 2025-01-31 10:11:58,053 DEBUG chr15: Calling hotspots 2025-01-31 10:11:58,190 DEBUG chr17: Calling hotspots 2025-01-31 10:11:58,229 DEBUG chr13: Calling hotspots 2025-01-31 10:11:58,371 DEBUG chr12: Calling hotspots 2025-01-31 10:12:01,642 DEBUG chr16: 2563 hotspots called 2025-01-31 10:12:01,810 DEBUG chr15: 3591 hotspots called 2025-01-31 10:12:01,813 DEBUG chr17: 3351 hotspots called 2025-01-31 10:12:01,873 DEBUG chr11: 5941 hotspots called 2025-01-31 10:12:02,142 DEBUG chr13: 3754 hotspots called 2025-01-31 10:12:02,198 DEBUG chr12: 2867 hotspots called 2025-01-31 10:12:02,657 DEBUG chr19: Calling hotspots 2025-01-31 10:12:02,802 DEBUG chr18: Calling hotspots 2025-01-31 10:12:04,171 DEBUG chr19: 2569 hotspots called 2025-01-31 10:12:04,878 DEBUG chr18: 2073 hotspots called 2025-01-31 10:12:05,174 DEBUG Results of call_hotspots emitted. 2025-01-31 10:12:05,211 INFO There are 77928 hotspots called at FDR=0.05 2025-01-31 10:12:08,880 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:12:08,880 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:12:17,226 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:12:17,536 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:12:17,774 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:12:17,884 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:12:18,691 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:12:18,925 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:12:26,143 DEBUG chr5: 5786 peaks called 2025-01-31 10:12:26,170 DEBUG chr3: 4517 peaks called 2025-01-31 10:12:27,050 DEBUG chr4: 5869 peaks called 2025-01-31 10:12:27,226 DEBUG chrX: 2613 peaks called 2025-01-31 10:12:28,499 DEBUG chr2: 7279 peaks called 2025-01-31 10:12:28,868 DEBUG chr1: 6282 peaks called 2025-01-31 10:12:33,410 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:12:33,508 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:12:33,571 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:12:33,830 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:12:34,564 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:12:35,110 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:12:40,891 DEBUG chr8: 4545 peaks called 2025-01-31 10:12:41,776 DEBUG chr7: 5940 peaks called 2025-01-31 10:12:41,840 DEBUG chr14: 2945 peaks called 2025-01-31 10:12:41,900 DEBUG chr9: 4890 peaks called 2025-01-31 10:12:41,923 DEBUG chr10: 4465 peaks called 2025-01-31 10:12:41,981 DEBUG chr6: 4404 peaks called 2025-01-31 10:12:47,316 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:12:47,336 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:12:47,640 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:12:48,049 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:12:48,225 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:12:48,594 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:12:52,840 DEBUG chr16: 2985 peaks called 2025-01-31 10:12:53,286 DEBUG chr17: 4025 peaks called 2025-01-31 10:12:53,997 DEBUG chr15: 4247 peaks called 2025-01-31 10:12:54,538 DEBUG chr11: 7218 peaks called 2025-01-31 10:12:54,893 DEBUG chr12: 3305 peaks called 2025-01-31 10:12:55,188 DEBUG chr13: 4420 peaks called 2025-01-31 10:12:56,274 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:12:56,652 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:12:59,466 DEBUG chr19: 3118 peaks called 2025-01-31 10:13:00,379 DEBUG chr18: 2347 peaks called 2025-01-31 10:13:01,008 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:13:01,063 INFO There are 91200 peaks called at FDR=0.05 2025-01-31 10:13:02,831 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:13:02,831 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:13:06,258 DEBUG chr4: Calling hotspots 2025-01-31 10:13:06,434 DEBUG chr3: Calling hotspots 2025-01-31 10:13:06,665 DEBUG chrX: Calling hotspots 2025-01-31 10:13:06,704 DEBUG chr5: Calling hotspots 2025-01-31 10:13:06,862 DEBUG chr2: Calling hotspots 2025-01-31 10:13:07,257 DEBUG chr1: Calling hotspots 2025-01-31 10:13:11,981 DEBUG chr4: 4076 hotspots called 2025-01-31 10:13:12,655 DEBUG chr5: 4023 hotspots called 2025-01-31 10:13:12,753 DEBUG chr3: 3018 hotspots called 2025-01-31 10:13:13,102 DEBUG chrX: 1695 hotspots called 2025-01-31 10:13:13,690 DEBUG chr2: 5011 hotspots called 2025-01-31 10:13:14,125 DEBUG chr1: 4272 hotspots called 2025-01-31 10:13:14,757 DEBUG chr6: Calling hotspots 2025-01-31 10:13:15,106 DEBUG chr10: Calling hotspots 2025-01-31 10:13:15,407 DEBUG chr7: Calling hotspots 2025-01-31 10:13:15,483 DEBUG chr8: Calling hotspots 2025-01-31 10:13:16,071 DEBUG chr14: Calling hotspots 2025-01-31 10:13:16,653 DEBUG chr9: Calling hotspots 2025-01-31 10:13:19,072 DEBUG chr10: 3079 hotspots called 2025-01-31 10:13:19,127 DEBUG chr6: 2965 hotspots called 2025-01-31 10:13:19,542 DEBUG chr8: 3103 hotspots called 2025-01-31 10:13:19,778 DEBUG chr7: 4083 hotspots called 2025-01-31 10:13:19,841 DEBUG chr14: 1968 hotspots called 2025-01-31 10:13:20,230 DEBUG chr9: 3365 hotspots called 2025-01-31 10:13:21,486 DEBUG chr13: Calling hotspots 2025-01-31 10:13:21,510 DEBUG chr11: Calling hotspots 2025-01-31 10:13:21,764 DEBUG chr16: Calling hotspots 2025-01-31 10:13:21,861 DEBUG chr15: Calling hotspots 2025-01-31 10:13:21,984 DEBUG chr12: Calling hotspots 2025-01-31 10:13:22,204 DEBUG chr17: Calling hotspots 2025-01-31 10:13:24,394 DEBUG chr16: 2008 hotspots called 2025-01-31 10:13:24,545 DEBUG chr15: 2847 hotspots called 2025-01-31 10:13:24,627 DEBUG chr17: 2747 hotspots called 2025-01-31 10:13:24,705 DEBUG chr13: 2953 hotspots called 2025-01-31 10:13:24,780 DEBUG chr11: 4940 hotspots called 2025-01-31 10:13:24,957 DEBUG chr12: 2275 hotspots called 2025-01-31 10:13:25,347 DEBUG chr19: Calling hotspots 2025-01-31 10:13:25,540 DEBUG chr18: Calling hotspots 2025-01-31 10:13:26,753 DEBUG chr19: 2124 hotspots called 2025-01-31 10:13:27,583 DEBUG chr18: 1593 hotspots called 2025-01-31 10:13:27,814 DEBUG Results of call_hotspots emitted. 2025-01-31 10:13:27,851 INFO There are 62145 hotspots called at FDR=0.01 2025-01-31 10:13:30,796 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:13:30,797 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:13:39,787 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:13:39,891 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:13:40,075 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:13:40,635 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:13:41,121 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:13:41,677 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:13:46,601 DEBUG chr5: 4721 peaks called 2025-01-31 10:13:46,760 DEBUG chr4: 4713 peaks called 2025-01-31 10:13:46,897 DEBUG chr3: 3594 peaks called 2025-01-31 10:13:47,320 DEBUG chrX: 1950 peaks called 2025-01-31 10:13:48,480 DEBUG chr2: 5882 peaks called 2025-01-31 10:13:49,447 DEBUG chr1: 5007 peaks called 2025-01-31 10:13:53,584 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:13:53,715 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:13:54,031 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:13:54,409 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:13:54,420 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:13:55,845 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:13:59,145 DEBUG chr10: 3630 peaks called 2025-01-31 10:13:59,494 DEBUG chr8: 3726 peaks called 2025-01-31 10:13:59,622 DEBUG chr14: 2299 peaks called 2025-01-31 10:14:01,146 DEBUG chr7: 4912 peaks called 2025-01-31 10:14:01,189 DEBUG chr9: 3965 peaks called 2025-01-31 10:14:01,225 DEBUG chr6: 3466 peaks called 2025-01-31 10:14:05,635 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:14:05,750 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:14:05,923 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:14:06,606 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:14:06,650 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:14:06,991 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:14:09,616 DEBUG chr11: 5983 peaks called 2025-01-31 10:14:09,666 DEBUG chr13: 3540 peaks called 2025-01-31 10:14:09,684 DEBUG chr17: 3314 peaks called 2025-01-31 10:14:09,902 DEBUG chr16: 2367 peaks called 2025-01-31 10:14:10,058 DEBUG chr12: 2658 peaks called 2025-01-31 10:14:10,466 DEBUG chr15: 3413 peaks called 2025-01-31 10:14:11,650 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:14:12,276 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:14:13,355 DEBUG chr19: 2580 peaks called 2025-01-31 10:14:15,648 DEBUG chr18: 1849 peaks called 2025-01-31 10:14:16,179 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:14:16,214 INFO There are 73569 peaks called at FDR=0.01 2025-01-31 10:14:17,666 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:14:17,666 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:14:21,284 DEBUG chr4: Calling hotspots 2025-01-31 10:14:21,308 DEBUG chr5: Calling hotspots 2025-01-31 10:14:21,319 DEBUG chr3: Calling hotspots 2025-01-31 10:14:21,700 DEBUG chrX: Calling hotspots 2025-01-31 10:14:21,933 DEBUG chr2: Calling hotspots 2025-01-31 10:14:22,111 DEBUG chr1: Calling hotspots 2025-01-31 10:14:25,830 DEBUG chr5: 3286 hotspots called 2025-01-31 10:14:25,970 DEBUG chr4: 3340 hotspots called 2025-01-31 10:14:26,199 DEBUG chr3: 2458 hotspots called 2025-01-31 10:14:26,969 DEBUG chrX: 1330 hotspots called 2025-01-31 10:14:27,520 DEBUG chr2: 4089 hotspots called 2025-01-31 10:14:28,250 DEBUG chr1: 3455 hotspots called 2025-01-31 10:14:28,614 DEBUG chr10: Calling hotspots 2025-01-31 10:14:29,001 DEBUG chr6: Calling hotspots 2025-01-31 10:14:29,025 DEBUG chr7: Calling hotspots 2025-01-31 10:14:29,636 DEBUG chr8: Calling hotspots 2025-01-31 10:14:30,060 DEBUG chr14: Calling hotspots 2025-01-31 10:14:30,882 DEBUG chr9: Calling hotspots 2025-01-31 10:14:31,616 DEBUG chr10: 2502 hotspots called 2025-01-31 10:14:32,458 DEBUG chr7: 3397 hotspots called 2025-01-31 10:14:32,504 DEBUG chr6: 2421 hotspots called 2025-01-31 10:14:32,549 DEBUG chr8: 2594 hotspots called 2025-01-31 10:14:32,995 DEBUG chr14: 1571 hotspots called 2025-01-31 10:14:34,009 DEBUG chr9: 2776 hotspots called 2025-01-31 10:14:34,268 DEBUG chr11: Calling hotspots 2025-01-31 10:14:34,629 DEBUG chr15: Calling hotspots 2025-01-31 10:14:34,761 DEBUG chr12: Calling hotspots 2025-01-31 10:14:34,864 DEBUG chr13: Calling hotspots 2025-01-31 10:14:35,061 DEBUG chr16: Calling hotspots 2025-01-31 10:14:35,626 DEBUG chr17: Calling hotspots 2025-01-31 10:14:37,215 DEBUG chr15: 2331 hotspots called 2025-01-31 10:14:37,424 DEBUG chr11: 4171 hotspots called 2025-01-31 10:14:37,596 DEBUG chr16: 1624 hotspots called 2025-01-31 10:14:37,836 DEBUG chr12: 1861 hotspots called 2025-01-31 10:14:37,862 DEBUG chr13: 2419 hotspots called 2025-01-31 10:14:38,034 DEBUG chr17: 2310 hotspots called 2025-01-31 10:14:38,333 DEBUG chr19: Calling hotspots 2025-01-31 10:14:38,508 DEBUG chr18: Calling hotspots 2025-01-31 10:14:39,768 DEBUG chr19: 1780 hotspots called 2025-01-31 10:14:40,581 DEBUG chr18: 1271 hotspots called 2025-01-31 10:14:40,902 DEBUG Results of call_hotspots emitted. 2025-01-31 10:14:40,938 INFO There are 50986 hotspots called at FDR=0.001 2025-01-31 10:14:43,391 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:14:43,392 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:14:51,838 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:14:52,244 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:14:52,767 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:14:52,859 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:14:53,694 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:14:53,955 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:14:59,932 DEBUG chr5: 3836 peaks called 2025-01-31 10:15:00,474 DEBUG chr4: 3824 peaks called 2025-01-31 10:15:00,836 DEBUG chr3: 2909 peaks called 2025-01-31 10:15:01,183 DEBUG chrX: 1540 peaks called 2025-01-31 10:15:01,672 DEBUG chr2: 4741 peaks called 2025-01-31 10:15:02,558 DEBUG chr1: 4044 peaks called 2025-01-31 10:15:06,883 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:15:07,139 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:15:07,562 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:15:07,749 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:15:08,082 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:15:08,709 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:15:14,083 DEBUG chr10: 2939 peaks called 2025-01-31 10:15:14,589 DEBUG chr8: 3080 peaks called 2025-01-31 10:15:15,224 DEBUG chr14: 1823 peaks called 2025-01-31 10:15:15,240 DEBUG chr6: 2785 peaks called 2025-01-31 10:15:15,775 DEBUG chr9: 3238 peaks called 2025-01-31 10:15:16,319 DEBUG chr7: 4051 peaks called 2025-01-31 10:15:19,577 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:15:21,015 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:15:21,083 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:15:21,173 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:15:21,268 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:15:21,432 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:15:23,351 DEBUG chr11: 4979 peaks called 2025-01-31 10:15:24,206 DEBUG chr17: 2738 peaks called 2025-01-31 10:15:24,460 DEBUG chr15: 2793 peaks called 2025-01-31 10:15:24,570 DEBUG chr16: 1897 peaks called 2025-01-31 10:15:25,113 DEBUG chr13: 2871 peaks called 2025-01-31 10:15:25,380 DEBUG chr12: 2153 peaks called 2025-01-31 10:15:26,176 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:15:26,821 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:15:28,993 DEBUG chr19: 2119 peaks called 2025-01-31 10:15:31,077 DEBUG chr18: 1499 peaks called 2025-01-31 10:15:31,542 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:15:31,575 INFO There are 59859 peaks called at FDR=0.001 2025-01-31 10:15:32,656 INFO Saving density 2025-01-31 10:15:32,656 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:15:50,060 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:15:54,898 DEBUG Converting density to bigwig 2025-01-31 10:16:54,605 INFO Program finished