2025-01-31 09:31:53,412 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:53,425 INFO Extracting cutcounts from bam file 2025-01-31 09:33:00,279 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:33:00,326 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:33:00,329 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:33:00,329 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:33:00,331 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:33:00,332 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:33:00,350 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:33:00,942 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:33:01,063 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:33:01,096 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:33:01,110 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:33:01,257 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:33:01,304 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:33:01,593 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:33:01,700 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:33:01,738 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:33:01,755 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:33:01,823 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:33:01,955 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:33:02,238 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:33:02,299 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:33:02,323 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:33:02,710 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:33:02,710 INFO Total cutcounts = 7862598 2025-01-31 09:33:02,715 INFO Smoothing signal using MODWT 2025-01-31 09:33:02,717 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:33:02,752 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:02,755 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:02,756 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:02,757 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:02,757 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:02,758 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:25,676 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:26,497 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:28,423 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:29,114 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:52,258 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:03,459 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:55,976 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:56,976 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:03,012 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:03,963 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:17,926 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:40,695 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:16,494 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:16,860 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:19,365 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:17,241 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:38:17,242 INFO Estimating parameters of background model 2025-01-31 09:38:17,242 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:38:21,462 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:38:22,300 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:38:22,798 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:38:22,969 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:38:23,042 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:38:23,494 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:38:37,848 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:38:37,850 DEBUG chr5: Signal quantile: 0.994. signal threshold: 9. Best RMSEA: 0.021 2025-01-31 09:38:39,785 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:38:39,787 DEBUG chr4: Signal quantile: 0.994. signal threshold: 9. Best RMSEA: 0.022 2025-01-31 09:38:40,818 DEBUG chr5 total SNP count: 235710 2025-01-31 09:38:40,818 DEBUG chr5 length: 151834684 2025-01-31 09:38:40,818 DEBUG ----------------------------------------- 2025-01-31 09:38:40,818 INFO Processing SNPs in chr5 2025-01-31 09:38:41,053 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 235710)] 2025-01-31 09:38:41,211 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:38:41,530 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:38:41,536 WARNING chrX: Best RMSEA: 0.074. Chromosome fit might be poorly approximated. 2025-01-31 09:38:41,536 DEBUG chrX: Signal quantile: 0.992. signal threshold: 4. Best RMSEA: 0.074 2025-01-31 09:38:42,160 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:38:42,162 DEBUG chr3: Signal quantile: 0.994. signal threshold: 7. Best RMSEA: 0.029 2025-01-31 09:38:43,287 DEBUG chr4 total SNP count: 237392 2025-01-31 09:38:43,287 DEBUG chr4 length: 156508116 2025-01-31 09:38:43,287 DEBUG ----------------------------------------- 2025-01-31 09:38:43,287 INFO Processing SNPs in chr4 2025-01-31 09:38:43,467 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:38:43,535 DEBUG chr2: Signal quantile: 0.994. signal threshold: 9. Best RMSEA: 0.022 2025-01-31 09:38:43,657 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 57517), (57517, 237392)] 2025-01-31 09:38:43,774 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:38:45,084 DEBUG chrX total SNP count: 215207 2025-01-31 09:38:45,084 DEBUG chrX length: 171031299 2025-01-31 09:38:45,084 DEBUG ----------------------------------------- 2025-01-31 09:38:45,084 INFO Processing SNPs in chrX 2025-01-31 09:38:45,430 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 30409), (30409, 30412), (30412, 30442), (30442, 30787), (30787, 58762), (58762, 155033), (155033, 215207)] 2025-01-31 09:38:45,503 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:38:45,505 DEBUG chr1: Signal quantile: 0.995. signal threshold: 9. Best RMSEA: 0.021 2025-01-31 09:38:45,534 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:38:45,590 DEBUG chr3 total SNP count: 236132 2025-01-31 09:38:45,590 DEBUG chr3 length: 160039680 2025-01-31 09:38:45,590 DEBUG ----------------------------------------- 2025-01-31 09:38:45,590 INFO Processing SNPs in chr3 2025-01-31 09:38:45,834 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 236132)] 2025-01-31 09:38:45,998 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:38:47,105 DEBUG chr2 total SNP count: 292039 2025-01-31 09:38:47,105 DEBUG chr2 length: 182113224 2025-01-31 09:38:47,105 DEBUG ----------------------------------------- 2025-01-31 09:38:47,105 INFO Processing SNPs in chr2 2025-01-31 09:38:47,578 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 284312), (284312, 292039)] 2025-01-31 09:38:47,774 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:38:48,940 DEBUG chr1 total SNP count: 316588 2025-01-31 09:38:48,941 DEBUG chr1 length: 195471971 2025-01-31 09:38:48,941 DEBUG ----------------------------------------- 2025-01-31 09:38:48,941 INFO Processing SNPs in chr1 2025-01-31 09:38:49,156 DEBUG Segmenting atomic regions: 2025-01-31 09:38:49,252 DEBUG Processing 1/100 atomic regions from SNP 0 to 602 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:49,259 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 316588)] 2025-01-31 09:38:49,476 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:38:50,599 DEBUG Segmenting atomic regions: 2025-01-31 09:38:50,703 DEBUG Processing 1/190 atomic regions from SNP 0 to 602 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:55,895 DEBUG Processing 2/100 atomic regions from SNP 302 to 904 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:55,906 DEBUG Processing 2/190 atomic regions from SNP 302 to 904 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:56,107 DEBUG Processing 3/100 atomic regions from SNP 604 to 1206 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:56,114 DEBUG Processing 3/190 atomic regions from SNP 604 to 1206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:56,321 DEBUG Processing 4/190 atomic regions from SNP 906 to 1508 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:56,325 DEBUG Processing 4/100 atomic regions from SNP 906 to 1508 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:56,531 DEBUG Processing 5/190 atomic regions from SNP 1208 to 1810 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:56,537 DEBUG Processing 5/100 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:56,741 DEBUG Processing 6/100 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:56,743 DEBUG Processing 6/190 atomic regions from SNP 1510 to 2112 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:56,950 DEBUG Processing 7/190 atomic regions from SNP 1812 to 2414 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:56,952 DEBUG Processing 7/100 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:57,156 DEBUG Processing 8/100 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:57,160 DEBUG Processing 8/190 atomic regions from SNP 2114 to 2716 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:57,402 DEBUG Processing 9/100 atomic regions from SNP 2416 to 3017 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:57,420 DEBUG Processing 9/190 atomic regions from SNP 2416 to 3018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:57,606 DEBUG Processing 10/100 atomic regions from SNP 2717 to 3318 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:57,625 DEBUG Processing 10/190 atomic regions from SNP 2718 to 3320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:57,862 DEBUG Processing 11/100 atomic regions from SNP 3018 to 3619 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:57,907 DEBUG Processing 11/190 atomic regions from SNP 3020 to 3622 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:58,148 DEBUG Processing 12/100 atomic regions from SNP 3319 to 3920 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:58,243 DEBUG Processing 12/190 atomic regions from SNP 3322 to 3924 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:58,400 DEBUG Processing 13/100 atomic regions from SNP 3620 to 4221 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:58,460 DEBUG Processing 13/190 atomic regions from SNP 3624 to 4226 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:58,628 DEBUG Processing 14/100 atomic regions from SNP 3921 to 4522 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:58,689 DEBUG Processing 14/190 atomic regions from SNP 3926 to 4528 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:58,848 DEBUG Processing 15/100 atomic regions from SNP 4222 to 4823 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:58,894 DEBUG Processing 15/190 atomic regions from SNP 4228 to 4830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:59,142 DEBUG Processing 16/100 atomic regions from SNP 4523 to 5124 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:59,144 DEBUG Processing 16/190 atomic regions from SNP 4530 to 5132 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:59,359 DEBUG Processing 17/190 atomic regions from SNP 4832 to 5434 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:59,365 DEBUG Processing 17/100 atomic regions from SNP 4824 to 5425 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:59,620 DEBUG Processing 18/190 atomic regions from SNP 5134 to 5736 for chr4 (subchromosome 1 of 2). 2025-01-31 09:38:59,623 DEBUG Processing 18/100 atomic regions from SNP 5125 to 5726 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:59,850 DEBUG Processing 19/100 atomic regions from SNP 5426 to 6027 for chrX (subchromosome 1 of 7). 2025-01-31 09:38:59,860 DEBUG Processing 19/190 atomic regions from SNP 5436 to 6038 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:00,120 DEBUG Processing 20/100 atomic regions from SNP 5727 to 6328 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:00,145 DEBUG Processing 20/190 atomic regions from SNP 5738 to 6340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:00,406 DEBUG Processing 21/100 atomic regions from SNP 6028 to 6629 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:00,454 DEBUG Processing 21/190 atomic regions from SNP 6040 to 6642 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:00,705 DEBUG Processing 22/100 atomic regions from SNP 6329 to 6930 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:00,809 DEBUG Processing 22/190 atomic regions from SNP 6342 to 6944 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:00,964 DEBUG Processing 23/100 atomic regions from SNP 6630 to 7231 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:01,030 DEBUG Processing 23/190 atomic regions from SNP 6644 to 7246 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:01,173 DEBUG Processing 24/100 atomic regions from SNP 6931 to 7532 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:01,236 DEBUG Processing 24/190 atomic regions from SNP 6946 to 7548 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:01,385 DEBUG Processing 25/100 atomic regions from SNP 7232 to 7833 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:01,490 DEBUG Processing 25/190 atomic regions from SNP 7248 to 7850 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:01,689 DEBUG Processing 26/100 atomic regions from SNP 7533 to 8134 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:01,809 DEBUG Processing 26/190 atomic regions from SNP 7550 to 8152 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:01,929 DEBUG Processing 27/100 atomic regions from SNP 7834 to 8435 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:02,026 DEBUG Processing 27/190 atomic regions from SNP 7852 to 8453 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:02,133 DEBUG Processing 28/100 atomic regions from SNP 8135 to 8736 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:02,233 DEBUG Processing 28/190 atomic regions from SNP 8153 to 8754 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:02,338 DEBUG Processing 29/100 atomic regions from SNP 8436 to 9037 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:02,444 DEBUG Processing 29/190 atomic regions from SNP 8454 to 9055 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:02,538 DEBUG Processing 30/100 atomic regions from SNP 8737 to 9338 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:02,655 DEBUG Processing 30/190 atomic regions from SNP 8755 to 9356 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:02,738 DEBUG Processing 31/100 atomic regions from SNP 9038 to 9639 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:02,863 DEBUG Processing 31/190 atomic regions from SNP 9056 to 9657 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:02,940 DEBUG Processing 32/100 atomic regions from SNP 9339 to 9940 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:03,068 DEBUG Processing 32/190 atomic regions from SNP 9357 to 9958 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:03,140 DEBUG Processing 33/100 atomic regions from SNP 9640 to 10241 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:03,275 DEBUG Processing 33/190 atomic regions from SNP 9658 to 10259 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:03,351 DEBUG Processing 34/100 atomic regions from SNP 9941 to 10542 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:03,609 DEBUG Processing 34/190 atomic regions from SNP 9959 to 10560 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:03,650 DEBUG Processing 35/100 atomic regions from SNP 10242 to 10843 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:03,931 DEBUG Processing 35/190 atomic regions from SNP 10260 to 10861 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:03,959 DEBUG Processing 36/100 atomic regions from SNP 10543 to 11144 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:04,148 DEBUG Processing 36/190 atomic regions from SNP 10561 to 11162 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:04,179 DEBUG Processing 37/100 atomic regions from SNP 10844 to 11445 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:04,457 DEBUG Processing 37/190 atomic regions from SNP 10862 to 11463 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:04,467 DEBUG Processing 38/100 atomic regions from SNP 11145 to 11746 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:04,670 DEBUG Processing 39/100 atomic regions from SNP 11446 to 12047 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:04,672 DEBUG Processing 38/190 atomic regions from SNP 11163 to 11764 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:04,974 DEBUG Processing 40/100 atomic regions from SNP 11747 to 12348 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:05,009 DEBUG Processing 39/190 atomic regions from SNP 11464 to 12065 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:05,179 DEBUG Processing 41/100 atomic regions from SNP 12048 to 12649 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:05,223 DEBUG Processing 40/190 atomic regions from SNP 11765 to 12366 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:05,382 DEBUG Processing 42/100 atomic regions from SNP 12349 to 12950 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:05,438 DEBUG Processing 41/190 atomic regions from SNP 12066 to 12667 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:05,591 DEBUG Processing 43/100 atomic regions from SNP 12650 to 13251 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:05,663 DEBUG Processing 42/190 atomic regions from SNP 12367 to 12968 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:05,795 DEBUG Processing 44/100 atomic regions from SNP 12951 to 13552 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:05,870 DEBUG Processing 43/190 atomic regions from SNP 12668 to 13269 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:05,993 DEBUG Processing 45/100 atomic regions from SNP 13252 to 13853 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:06,077 DEBUG Processing 44/190 atomic regions from SNP 12969 to 13570 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:06,190 DEBUG Processing 46/100 atomic regions from SNP 13553 to 14154 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:06,283 DEBUG Processing 45/190 atomic regions from SNP 13270 to 13871 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:06,388 DEBUG Processing 47/100 atomic regions from SNP 13854 to 14455 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:06,487 DEBUG Processing 46/190 atomic regions from SNP 13571 to 14172 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:06,712 DEBUG Processing 47/190 atomic regions from SNP 13872 to 14473 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:06,919 DEBUG Processing 48/190 atomic regions from SNP 14173 to 14774 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:06,919 DEBUG Processing 48/100 atomic regions from SNP 14155 to 14756 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:07,193 DEBUG Processing 49/190 atomic regions from SNP 14474 to 15075 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:07,204 DEBUG Processing 49/100 atomic regions from SNP 14456 to 15057 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:07,404 DEBUG Processing 50/190 atomic regions from SNP 14775 to 15376 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:07,410 DEBUG Processing 50/100 atomic regions from SNP 14757 to 15358 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:07,612 DEBUG Processing 51/100 atomic regions from SNP 15058 to 15659 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:07,618 DEBUG Processing 51/190 atomic regions from SNP 15076 to 15677 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:07,812 DEBUG Processing 52/100 atomic regions from SNP 15359 to 15960 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:07,822 DEBUG Processing 52/190 atomic regions from SNP 15377 to 15978 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:08,011 DEBUG Processing 53/100 atomic regions from SNP 15660 to 16261 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:08,025 DEBUG Processing 53/190 atomic regions from SNP 15678 to 16279 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:08,210 DEBUG Processing 54/100 atomic regions from SNP 15961 to 16562 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:08,230 DEBUG Processing 54/190 atomic regions from SNP 15979 to 16580 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:08,410 DEBUG Processing 55/100 atomic regions from SNP 16262 to 16863 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:08,434 DEBUG Processing 55/190 atomic regions from SNP 16280 to 16881 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:08,610 DEBUG Processing 56/100 atomic regions from SNP 16563 to 17164 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:08,639 DEBUG Processing 56/190 atomic regions from SNP 16581 to 17182 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:08,813 DEBUG Processing 57/100 atomic regions from SNP 16864 to 17465 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:08,847 DEBUG Processing 57/190 atomic regions from SNP 16882 to 17483 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:09,013 DEBUG Processing 58/100 atomic regions from SNP 17165 to 17766 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:09,052 DEBUG Processing 58/190 atomic regions from SNP 17183 to 17784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:09,186 DEBUG Segmenting atomic regions: 2025-01-31 09:39:09,212 DEBUG Processing 59/100 atomic regions from SNP 17466 to 18067 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:09,257 DEBUG Processing 59/190 atomic regions from SNP 17484 to 18085 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:09,290 DEBUG Processing 1/784 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:09,411 DEBUG Processing 60/100 atomic regions from SNP 17767 to 18368 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:09,466 DEBUG Processing 60/190 atomic regions from SNP 17785 to 18386 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:09,611 DEBUG Processing 61/100 atomic regions from SNP 18068 to 18669 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:09,675 DEBUG Processing 61/190 atomic regions from SNP 18086 to 18687 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:09,812 DEBUG Processing 62/100 atomic regions from SNP 18369 to 18970 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:09,884 DEBUG Processing 62/190 atomic regions from SNP 18387 to 18988 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:10,009 DEBUG Processing 63/100 atomic regions from SNP 18670 to 19271 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:10,089 DEBUG Processing 63/190 atomic regions from SNP 18688 to 19289 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:10,100 DEBUG Processing 2/784 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:10,210 DEBUG Processing 64/100 atomic regions from SNP 18971 to 19572 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:10,302 DEBUG Processing 64/190 atomic regions from SNP 18989 to 19590 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:10,313 DEBUG Processing 3/784 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:10,410 DEBUG Processing 65/100 atomic regions from SNP 19272 to 19873 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:10,509 DEBUG Processing 65/190 atomic regions from SNP 19290 to 19891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:10,520 DEBUG Processing 4/784 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:10,606 DEBUG Processing 66/100 atomic regions from SNP 19573 to 20174 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:10,713 DEBUG Processing 66/190 atomic regions from SNP 19591 to 20192 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:10,725 DEBUG Processing 5/784 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:10,804 DEBUG Processing 67/100 atomic regions from SNP 19874 to 20475 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:10,918 DEBUG Processing 67/190 atomic regions from SNP 19892 to 20493 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:10,931 DEBUG Processing 6/784 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:11,004 DEBUG Processing 68/100 atomic regions from SNP 20175 to 20776 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:11,126 DEBUG Processing 68/190 atomic regions from SNP 20193 to 20794 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:11,141 DEBUG Processing 7/784 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:11,201 DEBUG Processing 69/100 atomic regions from SNP 20476 to 21077 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:11,330 DEBUG Processing 69/190 atomic regions from SNP 20494 to 21095 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:11,348 DEBUG Processing 8/784 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:11,401 DEBUG Processing 70/100 atomic regions from SNP 20777 to 21378 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:11,535 DEBUG Processing 70/190 atomic regions from SNP 20795 to 21396 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:11,554 DEBUG Processing 9/784 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:11,602 DEBUG Processing 71/100 atomic regions from SNP 21078 to 21679 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:11,745 DEBUG Processing 71/190 atomic regions from SNP 21096 to 21697 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:11,765 DEBUG Processing 10/784 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:11,801 DEBUG Processing 72/100 atomic regions from SNP 21379 to 21980 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:11,947 DEBUG Processing 72/190 atomic regions from SNP 21397 to 21998 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:11,970 DEBUG Processing 11/784 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:11,999 DEBUG Processing 73/100 atomic regions from SNP 21680 to 22281 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:12,152 DEBUG Processing 73/190 atomic regions from SNP 21698 to 22299 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:12,176 DEBUG Processing 12/784 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:12,198 DEBUG Processing 74/100 atomic regions from SNP 21981 to 22582 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:12,356 DEBUG Processing 74/190 atomic regions from SNP 21999 to 22600 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:12,384 DEBUG Processing 13/784 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:12,397 DEBUG Processing 75/100 atomic regions from SNP 22282 to 22883 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:12,566 DEBUG Processing 75/190 atomic regions from SNP 22300 to 22901 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:12,595 DEBUG Processing 14/784 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:12,598 DEBUG Processing 76/100 atomic regions from SNP 22583 to 23184 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:12,773 DEBUG Processing 76/190 atomic regions from SNP 22601 to 23202 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:12,797 DEBUG Processing 77/100 atomic regions from SNP 22884 to 23485 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:12,804 DEBUG Processing 15/784 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:12,977 DEBUG Processing 77/190 atomic regions from SNP 22902 to 23503 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:12,995 DEBUG Processing 78/100 atomic regions from SNP 23185 to 23786 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:13,015 DEBUG Processing 16/784 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:13,187 DEBUG Processing 78/190 atomic regions from SNP 23203 to 23804 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:13,195 DEBUG Processing 79/100 atomic regions from SNP 23486 to 24087 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:13,227 DEBUG Processing 17/784 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:13,400 DEBUG Processing 79/190 atomic regions from SNP 23504 to 24105 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:13,401 DEBUG Processing 80/100 atomic regions from SNP 23787 to 24388 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:13,442 DEBUG Processing 18/784 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:13,603 DEBUG Processing 81/100 atomic regions from SNP 24088 to 24689 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:13,611 DEBUG Processing 80/190 atomic regions from SNP 23805 to 24406 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:13,653 DEBUG Processing 19/784 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:13,803 DEBUG Processing 82/100 atomic regions from SNP 24389 to 24990 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:13,823 DEBUG Processing 81/190 atomic regions from SNP 24106 to 24707 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:13,865 DEBUG Processing 20/784 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:14,003 DEBUG Processing 83/100 atomic regions from SNP 24690 to 25291 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:14,037 DEBUG Processing 82/190 atomic regions from SNP 24407 to 25008 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:14,072 DEBUG Segmenting atomic regions: 2025-01-31 09:39:14,076 DEBUG Processing 21/784 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:14,173 DEBUG Processing 1/786 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:14,200 DEBUG Processing 84/100 atomic regions from SNP 24991 to 25592 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:14,244 DEBUG Processing 83/190 atomic regions from SNP 24708 to 25309 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:14,286 DEBUG Processing 22/784 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:14,403 DEBUG Processing 85/100 atomic regions from SNP 25292 to 25893 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:14,464 DEBUG Processing 84/190 atomic regions from SNP 25009 to 25610 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:14,506 DEBUG Processing 23/784 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:14,600 DEBUG Processing 86/100 atomic regions from SNP 25593 to 26194 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:14,675 DEBUG Processing 85/190 atomic regions from SNP 25310 to 25911 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:14,720 DEBUG Processing 24/784 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:14,797 DEBUG Processing 87/100 atomic regions from SNP 25894 to 26495 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:14,858 DEBUG Processing 2/786 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:14,885 DEBUG Processing 86/190 atomic regions from SNP 25611 to 26212 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:14,930 DEBUG Processing 25/784 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:14,997 DEBUG Processing 88/100 atomic regions from SNP 26195 to 26796 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:15,069 DEBUG Processing 3/786 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:15,099 DEBUG Processing 87/190 atomic regions from SNP 25912 to 26513 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:15,143 DEBUG Processing 26/784 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:15,196 DEBUG Processing 89/100 atomic regions from SNP 26496 to 27097 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:15,280 DEBUG Processing 4/786 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:15,310 DEBUG Processing 88/190 atomic regions from SNP 26213 to 26814 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:15,354 DEBUG Processing 27/784 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:15,395 DEBUG Processing 90/100 atomic regions from SNP 26797 to 27398 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:15,490 DEBUG Processing 5/786 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:15,519 DEBUG Processing 89/190 atomic regions from SNP 26514 to 27115 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:15,569 DEBUG Processing 28/784 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:15,594 DEBUG Processing 91/100 atomic regions from SNP 27098 to 27699 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:15,698 DEBUG Processing 6/786 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:15,724 DEBUG Processing 90/190 atomic regions from SNP 26815 to 27416 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:15,777 DEBUG Processing 29/784 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:15,793 DEBUG Processing 92/100 atomic regions from SNP 27399 to 28000 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:15,910 DEBUG Processing 7/786 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:15,931 DEBUG Processing 91/190 atomic regions from SNP 27116 to 27717 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:15,987 DEBUG Processing 30/784 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:15,991 DEBUG Processing 93/100 atomic regions from SNP 27700 to 28301 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:16,119 DEBUG Processing 8/786 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:16,139 DEBUG Processing 92/190 atomic regions from SNP 27417 to 28018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:16,189 DEBUG Processing 94/100 atomic regions from SNP 28001 to 28602 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:16,194 DEBUG Processing 31/784 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:16,326 DEBUG Processing 9/786 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:16,344 DEBUG Processing 93/190 atomic regions from SNP 27718 to 28319 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:16,387 DEBUG Processing 95/100 atomic regions from SNP 28302 to 28903 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:16,400 DEBUG Processing 32/784 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:16,535 DEBUG Processing 10/786 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:16,550 DEBUG Processing 94/190 atomic regions from SNP 28019 to 28620 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:16,586 DEBUG Processing 96/100 atomic regions from SNP 28603 to 29204 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:16,607 DEBUG Processing 33/784 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:16,742 DEBUG Processing 11/786 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:16,753 DEBUG Processing 95/190 atomic regions from SNP 28320 to 28921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:16,785 DEBUG Processing 97/100 atomic regions from SNP 28904 to 29505 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:16,812 DEBUG Processing 34/784 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:16,951 DEBUG Processing 12/786 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:16,957 DEBUG Processing 96/190 atomic regions from SNP 28621 to 29222 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:16,983 DEBUG Processing 98/100 atomic regions from SNP 29205 to 29806 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:17,019 DEBUG Processing 35/784 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:17,158 DEBUG Processing 13/786 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:17,162 DEBUG Processing 97/190 atomic regions from SNP 28922 to 29523 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:17,181 DEBUG Processing 99/100 atomic regions from SNP 29506 to 30107 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:17,226 DEBUG Processing 36/784 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:17,365 DEBUG Processing 98/190 atomic regions from SNP 29223 to 29824 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:17,366 DEBUG Processing 14/786 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:17,378 DEBUG Processing 100/100 atomic regions from SNP 29807 to 30408 for chrX (subchromosome 1 of 7). 2025-01-31 09:39:17,431 DEBUG Processing 37/784 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:17,487 DEBUG Unique SNPs positions in subchromosome 1: 30409 2025-01-31 09:39:17,520 DEBUG Subchromosome time: 31.98595814104192, subchromosome SNPs: 30409 2025-01-31 09:39:17,520 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:39:17,561 DEBUG Segmenting atomic regions: 2025-01-31 09:39:17,578 DEBUG Processing 99/190 atomic regions from SNP 29524 to 30125 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:17,581 DEBUG Processing 15/786 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:17,646 DEBUG Processing 38/784 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:17,660 DEBUG Processing 1/1 atomic regions from SNP 0 to 344 for chrX (subchromosome 4 of 7). 2025-01-31 09:39:17,695 DEBUG Unique SNPs positions in subchromosome 4: 345 2025-01-31 09:39:17,696 DEBUG Subchromosome time: 0.1758195129223168, subchromosome SNPs: 345 2025-01-31 09:39:17,703 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:39:17,788 DEBUG Processing 100/190 atomic regions from SNP 29825 to 30426 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:17,791 DEBUG Processing 16/786 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:17,853 DEBUG Processing 39/784 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:17,994 DEBUG Processing 101/190 atomic regions from SNP 30126 to 30727 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:17,999 DEBUG Processing 17/786 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:18,060 DEBUG Processing 40/784 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:18,197 DEBUG Processing 102/190 atomic regions from SNP 30427 to 31028 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:18,207 DEBUG Processing 18/786 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:18,263 DEBUG Processing 41/784 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:18,401 DEBUG Processing 103/190 atomic regions from SNP 30728 to 31329 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:18,417 DEBUG Processing 19/786 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:18,467 DEBUG Processing 42/784 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:18,603 DEBUG Processing 104/190 atomic regions from SNP 31029 to 31630 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:18,626 DEBUG Processing 20/786 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:18,668 DEBUG Processing 43/784 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:18,803 DEBUG Processing 105/190 atomic regions from SNP 31330 to 31931 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:18,833 DEBUG Processing 21/786 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:18,871 DEBUG Processing 44/784 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:19,004 DEBUG Processing 106/190 atomic regions from SNP 31631 to 32232 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:19,041 DEBUG Processing 22/786 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:19,074 DEBUG Processing 45/784 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:19,208 DEBUG Processing 107/190 atomic regions from SNP 31932 to 32533 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:19,250 DEBUG Processing 23/786 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:19,280 DEBUG Processing 46/784 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:19,412 DEBUG Processing 108/190 atomic regions from SNP 32233 to 32834 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:19,460 DEBUG Processing 24/786 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:19,487 DEBUG Processing 47/784 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:19,620 DEBUG Processing 109/190 atomic regions from SNP 32534 to 33135 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:19,671 DEBUG Processing 25/786 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:19,694 DEBUG Processing 48/784 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:19,821 DEBUG Processing 110/190 atomic regions from SNP 32835 to 33436 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:19,879 DEBUG Processing 26/786 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:19,895 DEBUG Processing 49/784 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:20,022 DEBUG Processing 111/190 atomic regions from SNP 33136 to 33737 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:20,085 DEBUG Processing 27/786 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:20,100 DEBUG Processing 50/784 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:20,223 DEBUG Processing 112/190 atomic regions from SNP 33437 to 34038 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:20,294 DEBUG Processing 28/786 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:20,302 DEBUG Processing 51/784 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:20,423 DEBUG Processing 113/190 atomic regions from SNP 33738 to 34339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:20,502 DEBUG Processing 29/786 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:20,507 DEBUG Processing 52/784 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:20,625 DEBUG Processing 114/190 atomic regions from SNP 34039 to 34640 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:20,710 DEBUG Processing 30/786 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:20,711 DEBUG Processing 53/784 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:20,825 DEBUG Processing 115/190 atomic regions from SNP 34340 to 34941 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:20,914 DEBUG Processing 54/784 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:20,916 DEBUG Processing 31/786 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:21,016 DEBUG Segmenting atomic regions: 2025-01-31 09:39:21,027 DEBUG Processing 116/190 atomic regions from SNP 34641 to 35242 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:21,109 DEBUG Processing 1/92 atomic regions from SNP 0 to 601 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:21,119 DEBUG Processing 55/784 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:21,123 DEBUG Processing 32/786 atomic regions from SNP 9331 to 9931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:21,229 DEBUG Processing 117/190 atomic regions from SNP 34942 to 35543 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:21,303 DEBUG Processing 2/92 atomic regions from SNP 301 to 902 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:21,325 DEBUG Processing 56/784 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:21,328 DEBUG Processing 33/786 atomic regions from SNP 9631 to 10231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:21,431 DEBUG Processing 118/190 atomic regions from SNP 35243 to 35844 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:21,499 DEBUG Processing 3/92 atomic regions from SNP 602 to 1203 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:21,530 DEBUG Processing 57/784 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:21,536 DEBUG Processing 34/786 atomic regions from SNP 9931 to 10531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:21,572 DEBUG Segmenting atomic regions: 2025-01-31 09:39:21,634 DEBUG Processing 119/190 atomic regions from SNP 35544 to 36145 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:21,698 DEBUG Processing 4/92 atomic regions from SNP 903 to 1504 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:21,699 DEBUG Processing 1/946 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:21,736 DEBUG Processing 58/784 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:21,748 DEBUG Processing 35/786 atomic regions from SNP 10231 to 10831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:21,839 DEBUG Processing 120/190 atomic regions from SNP 35845 to 36446 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:21,897 DEBUG Processing 5/92 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:21,947 DEBUG Processing 59/784 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:21,958 DEBUG Processing 36/786 atomic regions from SNP 10531 to 11131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:22,045 DEBUG Processing 121/190 atomic regions from SNP 36146 to 36747 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:22,095 DEBUG Processing 6/92 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:22,155 DEBUG Processing 60/784 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:22,169 DEBUG Processing 37/786 atomic regions from SNP 10831 to 11431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:22,250 DEBUG Processing 122/190 atomic regions from SNP 36447 to 37048 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:22,296 DEBUG Processing 7/92 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:22,369 DEBUG Processing 61/784 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:22,385 DEBUG Processing 38/786 atomic regions from SNP 11131 to 11731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:22,457 DEBUG Processing 123/190 atomic regions from SNP 36748 to 37349 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:22,502 DEBUG Processing 2/946 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:22,511 DEBUG Processing 8/92 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:22,576 DEBUG Processing 62/784 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:22,596 DEBUG Processing 39/786 atomic regions from SNP 11431 to 12031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:22,663 DEBUG Processing 124/190 atomic regions from SNP 37049 to 37650 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:22,710 DEBUG Processing 9/92 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:22,728 DEBUG Processing 3/946 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:22,782 DEBUG Processing 63/784 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:22,808 DEBUG Processing 40/786 atomic regions from SNP 11731 to 12331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:22,866 DEBUG Processing 125/190 atomic regions from SNP 37350 to 37951 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:22,909 DEBUG Processing 10/92 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:22,954 DEBUG Processing 4/946 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:22,988 DEBUG Processing 64/784 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:23,017 DEBUG Processing 41/786 atomic regions from SNP 12031 to 12631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:23,069 DEBUG Processing 126/190 atomic regions from SNP 37651 to 38252 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:23,110 DEBUG Processing 11/92 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:23,181 DEBUG Processing 5/946 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:23,195 DEBUG Processing 65/784 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:23,228 DEBUG Processing 42/786 atomic regions from SNP 12331 to 12931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:23,272 DEBUG Processing 127/190 atomic regions from SNP 37952 to 38553 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:23,308 DEBUG Processing 12/92 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:23,401 DEBUG Processing 66/784 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:23,406 DEBUG Processing 6/946 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:23,436 DEBUG Processing 43/786 atomic regions from SNP 12631 to 13231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:23,476 DEBUG Processing 128/190 atomic regions from SNP 38253 to 38854 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:23,506 DEBUG Processing 13/92 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:23,609 DEBUG Processing 67/784 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:23,633 DEBUG Processing 7/946 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:23,647 DEBUG Processing 44/786 atomic regions from SNP 12931 to 13531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:23,683 DEBUG Processing 129/190 atomic regions from SNP 38554 to 39155 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:23,706 DEBUG Processing 14/92 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:23,816 DEBUG Processing 68/784 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:23,860 DEBUG Processing 45/786 atomic regions from SNP 13231 to 13831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:23,860 DEBUG Processing 8/946 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:23,888 DEBUG Processing 130/190 atomic regions from SNP 38855 to 39456 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:23,907 DEBUG Processing 15/92 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:24,022 DEBUG Processing 69/784 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:24,076 DEBUG Processing 46/786 atomic regions from SNP 13531 to 14131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:24,090 DEBUG Processing 9/946 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:24,096 DEBUG Processing 131/190 atomic regions from SNP 39156 to 39757 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:24,112 DEBUG Processing 16/92 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:24,228 DEBUG Processing 70/784 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:24,290 DEBUG Processing 47/786 atomic regions from SNP 13831 to 14431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:24,306 DEBUG Processing 132/190 atomic regions from SNP 39457 to 40058 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:24,315 DEBUG Processing 17/92 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:24,320 DEBUG Processing 10/946 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:24,432 DEBUG Processing 71/784 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:24,503 DEBUG Processing 48/786 atomic regions from SNP 14131 to 14731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:24,513 DEBUG Processing 133/190 atomic regions from SNP 39758 to 40359 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:24,517 DEBUG Processing 18/92 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:24,548 DEBUG Processing 11/946 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:24,636 DEBUG Processing 72/784 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:24,713 DEBUG Processing 49/786 atomic regions from SNP 14431 to 15031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:24,717 DEBUG Processing 19/92 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:24,719 DEBUG Processing 134/190 atomic regions from SNP 40059 to 40660 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:24,774 DEBUG Processing 12/946 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:24,840 DEBUG Processing 73/784 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:24,918 DEBUG Processing 20/92 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:24,924 DEBUG Processing 50/786 atomic regions from SNP 14731 to 15331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:24,926 DEBUG Processing 135/190 atomic regions from SNP 40360 to 40961 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:25,000 DEBUG Processing 13/946 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:25,046 DEBUG Processing 74/784 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:25,121 DEBUG Processing 21/92 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:25,132 DEBUG Processing 136/190 atomic regions from SNP 40661 to 41262 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:25,136 DEBUG Processing 51/786 atomic regions from SNP 15031 to 15631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:25,225 DEBUG Processing 14/946 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:25,250 DEBUG Processing 75/784 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:25,320 DEBUG Processing 22/92 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:25,338 DEBUG Processing 137/190 atomic regions from SNP 40962 to 41563 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:25,349 DEBUG Processing 52/786 atomic regions from SNP 15331 to 15931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:25,452 DEBUG Processing 15/946 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:25,457 DEBUG Processing 76/784 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:25,517 DEBUG Processing 23/92 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:25,543 DEBUG Processing 138/190 atomic regions from SNP 41263 to 41864 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:25,559 DEBUG Processing 53/786 atomic regions from SNP 15631 to 16231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:25,662 DEBUG Processing 77/784 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:25,678 DEBUG Processing 16/946 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:25,720 DEBUG Processing 24/92 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:25,748 DEBUG Processing 139/190 atomic regions from SNP 41564 to 42165 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:25,772 DEBUG Processing 54/786 atomic regions from SNP 15931 to 16531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:25,871 DEBUG Processing 78/784 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:25,906 DEBUG Processing 17/946 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:25,920 DEBUG Processing 25/92 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:25,954 DEBUG Processing 140/190 atomic regions from SNP 41865 to 42466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:25,979 DEBUG Processing 55/786 atomic regions from SNP 16231 to 16831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:26,077 DEBUG Processing 79/784 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:26,122 DEBUG Processing 26/92 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:26,137 DEBUG Processing 18/946 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:26,163 DEBUG Processing 141/190 atomic regions from SNP 42166 to 42767 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:26,194 DEBUG Processing 56/786 atomic regions from SNP 16531 to 17131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:26,286 DEBUG Processing 80/784 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:26,326 DEBUG Processing 27/92 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:26,368 DEBUG Processing 19/946 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:26,373 DEBUG Processing 142/190 atomic regions from SNP 42467 to 43068 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:26,406 DEBUG Processing 57/786 atomic regions from SNP 16831 to 17431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:26,490 DEBUG Processing 81/784 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:26,524 DEBUG Processing 28/92 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:26,579 DEBUG Processing 143/190 atomic regions from SNP 42768 to 43369 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:26,596 DEBUG Processing 20/946 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:26,616 DEBUG Processing 58/786 atomic regions from SNP 17131 to 17731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:26,696 DEBUG Processing 82/784 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:26,723 DEBUG Processing 29/92 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:26,784 DEBUG Processing 144/190 atomic regions from SNP 43069 to 43670 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:26,822 DEBUG Processing 21/946 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:26,826 DEBUG Processing 59/786 atomic regions from SNP 17431 to 18031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:26,899 DEBUG Processing 83/784 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:26,917 DEBUG Segmenting atomic regions: 2025-01-31 09:39:26,919 DEBUG Processing 30/92 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:26,988 DEBUG Processing 145/190 atomic regions from SNP 43370 to 43971 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:27,036 DEBUG Processing 60/786 atomic regions from SNP 17731 to 18331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:27,050 DEBUG Processing 22/946 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:27,054 DEBUG Processing 1/1054 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:27,105 DEBUG Processing 84/784 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:27,115 DEBUG Processing 31/92 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:27,191 DEBUG Processing 146/190 atomic regions from SNP 43671 to 44272 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:27,247 DEBUG Processing 61/786 atomic regions from SNP 18031 to 18631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:27,281 DEBUG Processing 23/946 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:27,314 DEBUG Processing 85/784 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:27,319 DEBUG Processing 32/92 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:27,397 DEBUG Processing 147/190 atomic regions from SNP 43972 to 44573 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:27,458 DEBUG Processing 62/786 atomic regions from SNP 18331 to 18931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:27,507 DEBUG Processing 24/946 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:27,519 DEBUG Processing 33/92 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:27,521 DEBUG Processing 86/784 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:27,601 DEBUG Processing 148/190 atomic regions from SNP 44273 to 44874 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:27,667 DEBUG Processing 63/786 atomic regions from SNP 18631 to 19231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:27,720 DEBUG Processing 34/92 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:27,735 DEBUG Processing 87/784 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:27,742 DEBUG Processing 25/946 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:27,804 DEBUG Processing 2/1054 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:27,814 DEBUG Processing 149/190 atomic regions from SNP 44574 to 45175 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:27,876 DEBUG Processing 64/786 atomic regions from SNP 18931 to 19531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:27,916 DEBUG Processing 35/92 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:27,944 DEBUG Processing 88/784 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:27,973 DEBUG Processing 26/946 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:28,026 DEBUG Processing 150/190 atomic regions from SNP 44875 to 45476 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:28,044 DEBUG Processing 3/1054 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:28,088 DEBUG Processing 65/786 atomic regions from SNP 19231 to 19831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:28,116 DEBUG Processing 36/92 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:28,152 DEBUG Processing 89/784 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:28,200 DEBUG Processing 27/946 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:28,232 DEBUG Processing 151/190 atomic regions from SNP 45176 to 45777 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:28,280 DEBUG Processing 4/1054 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:28,299 DEBUG Processing 66/786 atomic regions from SNP 19531 to 20131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:28,315 DEBUG Processing 37/92 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:28,358 DEBUG Processing 90/784 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:28,428 DEBUG Processing 28/946 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:28,438 DEBUG Processing 152/190 atomic regions from SNP 45477 to 46078 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:28,509 DEBUG Processing 67/786 atomic regions from SNP 19831 to 20431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:28,514 DEBUG Processing 38/92 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:28,518 DEBUG Processing 5/1054 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:28,561 DEBUG Processing 91/784 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:28,641 DEBUG Processing 153/190 atomic regions from SNP 45778 to 46379 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:28,652 DEBUG Processing 29/946 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:28,713 DEBUG Processing 39/92 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:28,720 DEBUG Processing 68/786 atomic regions from SNP 20131 to 20731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:28,756 DEBUG Processing 6/1054 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:28,765 DEBUG Processing 92/784 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:28,847 DEBUG Processing 154/190 atomic regions from SNP 46079 to 46680 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:28,878 DEBUG Processing 30/946 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:28,917 DEBUG Processing 40/92 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:28,932 DEBUG Processing 69/786 atomic regions from SNP 20431 to 21031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:28,976 DEBUG Processing 93/784 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:28,991 DEBUG Processing 7/1054 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:29,050 DEBUG Processing 155/190 atomic regions from SNP 46380 to 46981 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:29,103 DEBUG Processing 31/946 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:29,115 DEBUG Processing 41/92 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:29,140 DEBUG Processing 70/786 atomic regions from SNP 20731 to 21331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:29,182 DEBUG Processing 94/784 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:29,231 DEBUG Processing 8/1054 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:29,253 DEBUG Processing 156/190 atomic regions from SNP 46681 to 47282 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:29,314 DEBUG Processing 42/92 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:29,328 DEBUG Processing 32/946 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:29,347 DEBUG Processing 71/786 atomic regions from SNP 21031 to 21631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:29,385 DEBUG Processing 95/784 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:29,457 DEBUG Processing 157/190 atomic regions from SNP 46982 to 47583 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:29,468 DEBUG Processing 9/1054 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:29,512 DEBUG Processing 43/92 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:29,553 DEBUG Processing 33/946 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:29,554 DEBUG Processing 72/786 atomic regions from SNP 21331 to 21931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:29,588 DEBUG Processing 96/784 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:29,662 DEBUG Processing 158/190 atomic regions from SNP 47283 to 47884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:29,706 DEBUG Processing 10/1054 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:29,709 DEBUG Processing 44/92 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:29,761 DEBUG Processing 73/786 atomic regions from SNP 21631 to 22231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:29,776 DEBUG Processing 34/946 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:29,791 DEBUG Processing 97/784 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:29,864 DEBUG Processing 159/190 atomic regions from SNP 47584 to 48185 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:29,907 DEBUG Processing 45/92 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:29,943 DEBUG Processing 11/1054 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:29,968 DEBUG Processing 74/786 atomic regions from SNP 21931 to 22531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:30,000 DEBUG Processing 35/946 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:30,023 DEBUG Processing 98/784 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:30,065 DEBUG Processing 160/190 atomic regions from SNP 47885 to 48486 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:30,103 DEBUG Processing 46/92 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:30,176 DEBUG Processing 75/786 atomic regions from SNP 22231 to 22831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:30,182 DEBUG Processing 12/1054 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:30,226 DEBUG Processing 36/946 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:30,244 DEBUG Processing 99/784 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:30,268 DEBUG Processing 161/190 atomic regions from SNP 48186 to 48787 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:30,300 DEBUG Processing 47/92 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:30,384 DEBUG Processing 76/786 atomic regions from SNP 22531 to 23131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:30,423 DEBUG Processing 13/1054 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:30,455 DEBUG Processing 37/946 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:30,470 DEBUG Processing 100/784 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:30,475 DEBUG Processing 162/190 atomic regions from SNP 48487 to 49088 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:30,495 DEBUG Processing 48/92 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:30,587 DEBUG Processing 77/786 atomic regions from SNP 22831 to 23431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:30,665 DEBUG Processing 14/1054 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:30,684 DEBUG Processing 163/190 atomic regions from SNP 48788 to 49389 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:30,684 DEBUG Processing 38/946 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:30,692 DEBUG Processing 49/92 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:30,701 DEBUG Processing 101/784 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:30,790 DEBUG Processing 78/786 atomic regions from SNP 23131 to 23731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:30,888 DEBUG Processing 50/92 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:30,894 DEBUG Processing 164/190 atomic regions from SNP 49089 to 49690 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:30,907 DEBUG Processing 15/1054 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:30,914 DEBUG Processing 39/946 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:30,918 DEBUG Processing 102/784 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:30,993 DEBUG Processing 79/786 atomic regions from SNP 23431 to 24031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:31,083 DEBUG Processing 51/92 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:31,102 DEBUG Processing 165/190 atomic regions from SNP 49390 to 49991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:31,127 DEBUG Processing 103/784 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:31,144 DEBUG Processing 40/946 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:31,151 DEBUG Processing 16/1054 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:31,197 DEBUG Processing 80/786 atomic regions from SNP 23731 to 24331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:31,277 DEBUG Processing 52/92 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:31,309 DEBUG Processing 166/190 atomic regions from SNP 49691 to 50292 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:31,335 DEBUG Processing 104/784 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:31,373 DEBUG Processing 41/946 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:31,391 DEBUG Processing 17/1054 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:31,401 DEBUG Processing 81/786 atomic regions from SNP 24031 to 24631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:31,471 DEBUG Processing 53/92 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:31,513 DEBUG Processing 167/190 atomic regions from SNP 49992 to 50593 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:31,541 DEBUG Processing 105/784 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:31,598 DEBUG Processing 42/946 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:31,605 DEBUG Processing 82/786 atomic regions from SNP 24331 to 24931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:31,633 DEBUG Processing 18/1054 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:31,666 DEBUG Processing 54/92 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:31,717 DEBUG Processing 168/190 atomic regions from SNP 50293 to 50894 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:31,745 DEBUG Processing 106/784 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:31,812 DEBUG Processing 83/786 atomic regions from SNP 24631 to 25231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:31,827 DEBUG Processing 43/946 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:31,861 DEBUG Processing 55/92 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:31,872 DEBUG Processing 19/1054 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:31,921 DEBUG Processing 169/190 atomic regions from SNP 50594 to 51195 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:31,948 DEBUG Processing 107/784 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:32,018 DEBUG Processing 84/786 atomic regions from SNP 24931 to 25531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:32,055 DEBUG Processing 44/946 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:32,058 DEBUG Processing 56/92 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:32,114 DEBUG Processing 20/1054 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:32,127 DEBUG Processing 170/190 atomic regions from SNP 50895 to 51496 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:32,152 DEBUG Processing 108/784 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:32,227 DEBUG Processing 85/786 atomic regions from SNP 25231 to 25831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:32,253 DEBUG Processing 57/92 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:32,281 DEBUG Processing 45/946 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:32,332 DEBUG Processing 171/190 atomic regions from SNP 51196 to 51797 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:32,353 DEBUG Processing 21/1054 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:32,357 DEBUG Processing 109/784 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:32,435 DEBUG Processing 86/786 atomic regions from SNP 25531 to 26131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:32,450 DEBUG Processing 58/92 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:32,506 DEBUG Processing 46/946 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:32,538 DEBUG Processing 172/190 atomic regions from SNP 51497 to 52098 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:32,565 DEBUG Processing 110/784 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:32,594 DEBUG Processing 22/1054 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:32,644 DEBUG Processing 87/786 atomic regions from SNP 25831 to 26431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:32,648 DEBUG Processing 59/92 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:32,732 DEBUG Processing 47/946 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:32,743 DEBUG Processing 173/190 atomic regions from SNP 51798 to 52399 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:32,769 DEBUG Processing 111/784 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:32,829 DEBUG Processing 23/1054 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:32,843 DEBUG Processing 60/92 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:32,850 DEBUG Processing 88/786 atomic regions from SNP 26131 to 26731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:32,948 DEBUG Processing 174/190 atomic regions from SNP 52099 to 52700 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:32,956 DEBUG Processing 48/946 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:32,972 DEBUG Processing 112/784 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:33,039 DEBUG Processing 61/92 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:33,057 DEBUG Processing 89/786 atomic regions from SNP 26431 to 27031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:33,067 DEBUG Processing 24/1054 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:33,153 DEBUG Processing 175/190 atomic regions from SNP 52400 to 53001 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:33,177 DEBUG Processing 113/784 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:33,180 DEBUG Processing 49/946 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:33,235 DEBUG Processing 62/92 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:33,263 DEBUG Processing 90/786 atomic regions from SNP 26731 to 27331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:33,305 DEBUG Processing 25/1054 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:33,358 DEBUG Processing 176/190 atomic regions from SNP 52701 to 53302 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:33,382 DEBUG Processing 114/784 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:33,406 DEBUG Processing 50/946 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:33,434 DEBUG Processing 63/92 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:33,471 DEBUG Processing 91/786 atomic regions from SNP 27031 to 27631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:33,544 DEBUG Processing 26/1054 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:33,565 DEBUG Processing 177/190 atomic regions from SNP 53002 to 53603 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:33,587 DEBUG Processing 115/784 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:33,630 DEBUG Processing 51/946 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:33,632 DEBUG Processing 64/92 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:33,677 DEBUG Processing 92/786 atomic regions from SNP 27331 to 27931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:33,769 DEBUG Processing 178/190 atomic regions from SNP 53303 to 53904 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:33,782 DEBUG Processing 27/1054 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:33,791 DEBUG Processing 116/784 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:33,828 DEBUG Processing 65/92 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:33,854 DEBUG Processing 52/946 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:33,882 DEBUG Processing 93/786 atomic regions from SNP 27631 to 28231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:33,975 DEBUG Processing 179/190 atomic regions from SNP 53604 to 54205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:33,999 DEBUG Processing 117/784 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:34,024 DEBUG Processing 28/1054 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:34,027 DEBUG Processing 66/92 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:34,079 DEBUG Processing 53/946 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:34,089 DEBUG Processing 94/786 atomic regions from SNP 27931 to 28531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:34,182 DEBUG Processing 180/190 atomic regions from SNP 53905 to 54506 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:34,204 DEBUG Processing 118/784 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:34,225 DEBUG Processing 67/92 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:34,262 DEBUG Processing 29/1054 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:34,296 DEBUG Processing 95/786 atomic regions from SNP 28231 to 28831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:34,304 DEBUG Processing 54/946 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:34,390 DEBUG Processing 181/190 atomic regions from SNP 54206 to 54807 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:34,411 DEBUG Processing 119/784 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:34,425 DEBUG Processing 68/92 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:34,502 DEBUG Processing 30/1054 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:34,504 DEBUG Processing 96/786 atomic regions from SNP 28531 to 29131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:34,528 DEBUG Processing 55/946 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:34,595 DEBUG Processing 182/190 atomic regions from SNP 54507 to 55108 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:34,615 DEBUG Processing 120/784 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:34,622 DEBUG Processing 69/92 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:34,711 DEBUG Processing 97/786 atomic regions from SNP 28831 to 29431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:34,742 DEBUG Processing 31/1054 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:34,752 DEBUG Processing 56/946 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:34,798 DEBUG Processing 183/190 atomic regions from SNP 54808 to 55409 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:34,817 DEBUG Processing 121/784 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:34,819 DEBUG Processing 70/92 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:34,917 DEBUG Processing 98/786 atomic regions from SNP 29131 to 29731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:34,977 DEBUG Processing 57/946 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:34,979 DEBUG Processing 32/1054 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:35,003 DEBUG Processing 184/190 atomic regions from SNP 55109 to 55710 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:35,014 DEBUG Processing 71/92 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:35,019 DEBUG Processing 122/784 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:35,121 DEBUG Processing 99/786 atomic regions from SNP 29431 to 30031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:35,205 DEBUG Processing 58/946 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:35,211 DEBUG Processing 72/92 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:35,213 DEBUG Processing 185/190 atomic regions from SNP 55410 to 56011 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:35,220 DEBUG Processing 33/1054 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:35,226 DEBUG Processing 123/784 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:35,325 DEBUG Processing 100/786 atomic regions from SNP 29731 to 30331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:35,408 DEBUG Processing 73/92 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:35,428 DEBUG Processing 186/190 atomic regions from SNP 55711 to 56312 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:35,433 DEBUG Processing 59/946 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:35,434 DEBUG Processing 124/784 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:35,463 DEBUG Processing 34/1054 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:35,530 DEBUG Processing 101/786 atomic regions from SNP 30031 to 30631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:35,633 DEBUG Processing 74/92 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:35,643 DEBUG Processing 125/784 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:35,660 DEBUG Processing 187/190 atomic regions from SNP 56012 to 56613 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:35,663 DEBUG Processing 60/946 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:35,705 DEBUG Processing 35/1054 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:35,740 DEBUG Processing 102/786 atomic regions from SNP 30331 to 30931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:35,834 DEBUG Processing 75/92 atomic regions from SNP 22274 to 22874 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:35,854 DEBUG Processing 126/784 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:35,873 DEBUG Processing 188/190 atomic regions from SNP 56313 to 56914 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:35,893 DEBUG Processing 61/946 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:35,946 DEBUG Processing 36/1054 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:35,948 DEBUG Processing 103/786 atomic regions from SNP 30631 to 31231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:36,030 DEBUG Processing 76/92 atomic regions from SNP 22574 to 23174 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:36,062 DEBUG Processing 127/784 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:36,082 DEBUG Processing 189/190 atomic regions from SNP 56614 to 57215 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:36,123 DEBUG Processing 62/946 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:36,156 DEBUG Processing 104/786 atomic regions from SNP 30931 to 31531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:36,183 DEBUG Processing 37/1054 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:36,226 DEBUG Processing 77/92 atomic regions from SNP 22874 to 23474 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:36,271 DEBUG Processing 128/784 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:36,292 DEBUG Processing 190/190 atomic regions from SNP 56915 to 57516 for chr4 (subchromosome 1 of 2). 2025-01-31 09:39:36,355 DEBUG Processing 63/946 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:36,366 DEBUG Processing 105/786 atomic regions from SNP 31231 to 31831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:36,404 DEBUG Unique SNPs positions in subchromosome 1: 57517 2025-01-31 09:39:36,424 DEBUG Processing 78/92 atomic regions from SNP 23174 to 23774 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:36,430 DEBUG Processing 38/1054 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:36,482 DEBUG Processing 129/784 atomic regions from SNP 38528 to 39129 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:36,488 DEBUG Subchromosome time: 52.713907570927404, subchromosome SNPs: 57517 2025-01-31 09:39:36,532 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:39:36,574 DEBUG Processing 106/786 atomic regions from SNP 31531 to 32131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:36,587 DEBUG Processing 64/946 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:36,624 DEBUG Processing 79/92 atomic regions from SNP 23474 to 24074 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:36,674 DEBUG Processing 39/1054 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:36,690 DEBUG Processing 130/784 atomic regions from SNP 38829 to 39430 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:36,783 DEBUG Processing 107/786 atomic regions from SNP 31831 to 32431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:36,811 DEBUG Processing 65/946 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:36,823 DEBUG Processing 80/92 atomic regions from SNP 23774 to 24374 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:36,896 DEBUG Processing 131/784 atomic regions from SNP 39130 to 39731 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:36,915 DEBUG Processing 40/1054 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:36,993 DEBUG Processing 108/786 atomic regions from SNP 32131 to 32731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:37,024 DEBUG Processing 81/92 atomic regions from SNP 24074 to 24674 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:37,040 DEBUG Processing 66/946 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:37,104 DEBUG Processing 132/784 atomic regions from SNP 39431 to 40032 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:37,156 DEBUG Processing 41/1054 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:37,212 DEBUG Processing 109/786 atomic regions from SNP 32431 to 33031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:37,233 DEBUG Processing 82/92 atomic regions from SNP 24374 to 24974 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:37,274 DEBUG Processing 67/946 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:37,321 DEBUG Processing 133/784 atomic regions from SNP 39732 to 40333 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:37,406 DEBUG Processing 42/1054 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:37,438 DEBUG Processing 110/786 atomic regions from SNP 32731 to 33331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:37,452 DEBUG Processing 83/92 atomic regions from SNP 24674 to 25274 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:37,512 DEBUG Processing 68/946 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:37,558 DEBUG Processing 134/784 atomic regions from SNP 40033 to 40634 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:37,663 DEBUG Processing 43/1054 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:37,678 DEBUG Processing 111/786 atomic regions from SNP 33031 to 33631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:37,679 DEBUG Processing 84/92 atomic regions from SNP 24974 to 25574 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:37,758 DEBUG Processing 69/946 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:37,805 DEBUG Processing 135/784 atomic regions from SNP 40334 to 40935 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:37,903 DEBUG Processing 85/92 atomic regions from SNP 25274 to 25874 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:37,913 DEBUG Processing 112/786 atomic regions from SNP 33331 to 33931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:37,933 DEBUG Processing 44/1054 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:37,999 DEBUG Processing 70/946 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:38,045 DEBUG Processing 136/784 atomic regions from SNP 40635 to 41236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:38,129 DEBUG Processing 86/92 atomic regions from SNP 25574 to 26174 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:38,184 DEBUG Processing 113/786 atomic regions from SNP 33631 to 34231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:38,223 DEBUG Processing 45/1054 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:38,346 DEBUG Processing 71/946 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:38,389 DEBUG Processing 137/784 atomic regions from SNP 40936 to 41537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:38,456 DEBUG Processing 87/92 atomic regions from SNP 25874 to 26474 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:38,529 DEBUG Processing 114/786 atomic regions from SNP 33931 to 34531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:38,581 DEBUG Processing 46/1054 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:38,676 DEBUG Processing 72/946 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:38,685 DEBUG Processing 138/784 atomic regions from SNP 41237 to 41838 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:38,696 DEBUG Processing 88/92 atomic regions from SNP 26174 to 26774 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:38,762 DEBUG Processing 115/786 atomic regions from SNP 34231 to 34831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:38,848 DEBUG Processing 47/1054 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:38,907 DEBUG Processing 89/92 atomic regions from SNP 26474 to 27074 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:38,908 DEBUG Processing 139/784 atomic regions from SNP 41538 to 42139 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:38,919 DEBUG Processing 73/946 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:38,977 DEBUG Processing 116/786 atomic regions from SNP 34531 to 35131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:39,099 DEBUG Processing 48/1054 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:39,115 DEBUG Processing 90/92 atomic regions from SNP 26774 to 27374 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:39,121 DEBUG Processing 140/784 atomic regions from SNP 41839 to 42440 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:39,155 DEBUG Processing 74/946 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:39,189 DEBUG Processing 117/786 atomic regions from SNP 34831 to 35431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:39,316 DEBUG Processing 91/92 atomic regions from SNP 27074 to 27674 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:39,334 DEBUG Processing 141/784 atomic regions from SNP 42140 to 42741 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:39,347 DEBUG Processing 49/1054 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:39,386 DEBUG Processing 75/946 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:39,399 DEBUG Processing 118/786 atomic regions from SNP 35131 to 35731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:39,518 DEBUG Processing 92/92 atomic regions from SNP 27374 to 27974 for chrX (subchromosome 5 of 7). 2025-01-31 09:39:39,543 DEBUG Processing 142/784 atomic regions from SNP 42441 to 43042 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:39,598 DEBUG Processing 50/1054 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:39,610 DEBUG Processing 119/786 atomic regions from SNP 35431 to 36031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:39,616 DEBUG Processing 76/946 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:39,624 DEBUG Unique SNPs positions in subchromosome 5: 27975 2025-01-31 09:39:39,656 DEBUG Subchromosome time: 21.953096454031765, subchromosome SNPs: 27975 2025-01-31 09:39:39,680 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:39:39,751 DEBUG Processing 143/784 atomic regions from SNP 42742 to 43343 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:39,825 DEBUG Processing 120/786 atomic regions from SNP 35731 to 36331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:39,845 DEBUG Processing 77/946 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:39,850 DEBUG Processing 51/1054 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:39,957 DEBUG Processing 144/784 atomic regions from SNP 43043 to 43644 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:40,041 DEBUG Processing 121/786 atomic regions from SNP 36031 to 36631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:40,076 DEBUG Processing 78/946 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:40,102 DEBUG Processing 52/1054 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:40,165 DEBUG Processing 145/784 atomic regions from SNP 43344 to 43945 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:40,255 DEBUG Processing 122/786 atomic regions from SNP 36331 to 36931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:40,307 DEBUG Processing 79/946 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:40,357 DEBUG Processing 53/1054 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:40,378 DEBUG Processing 146/784 atomic regions from SNP 43645 to 44246 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:40,471 DEBUG Processing 123/786 atomic regions from SNP 36631 to 37231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:40,540 DEBUG Processing 80/946 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:40,588 DEBUG Processing 147/784 atomic regions from SNP 43946 to 44547 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:40,608 DEBUG Processing 54/1054 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:40,683 DEBUG Processing 124/786 atomic regions from SNP 36931 to 37531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:40,769 DEBUG Processing 81/946 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:40,797 DEBUG Processing 148/784 atomic regions from SNP 44247 to 44848 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:40,861 DEBUG Processing 55/1054 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:40,896 DEBUG Processing 125/786 atomic regions from SNP 37231 to 37831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:41,006 DEBUG Processing 149/784 atomic regions from SNP 44548 to 45149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:41,022 DEBUG Processing 82/946 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:41,111 DEBUG Processing 126/786 atomic regions from SNP 37531 to 38131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:41,113 DEBUG Processing 56/1054 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:41,228 DEBUG Processing 150/784 atomic regions from SNP 44849 to 45450 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:41,265 DEBUG Processing 83/946 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:41,337 DEBUG Processing 127/786 atomic regions from SNP 37831 to 38431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:41,375 DEBUG Processing 57/1054 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:41,491 DEBUG Processing 151/784 atomic regions from SNP 45150 to 45751 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:41,555 DEBUG Processing 84/946 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:41,633 DEBUG Processing 128/786 atomic regions from SNP 38131 to 38731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:41,716 DEBUG Processing 58/1054 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:41,792 DEBUG Processing 152/784 atomic regions from SNP 45451 to 46052 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:41,881 DEBUG Processing 85/946 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:41,897 DEBUG Processing 129/786 atomic regions from SNP 38431 to 39031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:42,043 DEBUG Processing 59/1054 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:42,111 DEBUG Processing 153/784 atomic regions from SNP 45752 to 46353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:42,238 DEBUG Processing 130/786 atomic regions from SNP 38731 to 39331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:42,243 DEBUG Processing 86/946 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:42,457 DEBUG Processing 60/1054 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:42,466 DEBUG Processing 154/784 atomic regions from SNP 46053 to 46654 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:42,532 DEBUG Processing 131/786 atomic regions from SNP 39031 to 39631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:42,555 DEBUG Processing 87/946 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:42,762 DEBUG Processing 155/784 atomic regions from SNP 46354 to 46955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:42,797 DEBUG Processing 61/1054 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:42,844 DEBUG Processing 132/786 atomic regions from SNP 39331 to 39931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:42,887 DEBUG Processing 88/946 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:43,031 DEBUG Processing 156/784 atomic regions from SNP 46655 to 47256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:43,140 DEBUG Processing 62/1054 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:43,161 DEBUG Processing 133/786 atomic regions from SNP 39631 to 40231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:43,200 DEBUG Processing 89/946 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:43,265 DEBUG Processing 157/784 atomic regions from SNP 46956 to 47557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:43,426 DEBUG Processing 134/786 atomic regions from SNP 39931 to 40531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:43,441 DEBUG Processing 63/1054 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:43,473 DEBUG Processing 90/946 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:43,484 DEBUG Processing 158/784 atomic regions from SNP 47257 to 47858 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:43,720 DEBUG Processing 135/786 atomic regions from SNP 40231 to 40831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:43,788 DEBUG Processing 64/1054 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:43,795 DEBUG Processing 159/784 atomic regions from SNP 47558 to 48159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:43,799 DEBUG Processing 91/946 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:44,027 DEBUG Processing 136/786 atomic regions from SNP 40531 to 41131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:44,126 DEBUG Processing 160/784 atomic regions from SNP 47859 to 48460 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:44,137 DEBUG Processing 92/946 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:44,139 DEBUG Processing 65/1054 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:44,363 DEBUG Processing 137/786 atomic regions from SNP 40831 to 41431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:44,443 DEBUG Processing 161/784 atomic regions from SNP 48160 to 48761 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:44,480 DEBUG Processing 93/946 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:44,496 DEBUG Processing 66/1054 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:44,673 DEBUG Processing 138/786 atomic regions from SNP 41131 to 41731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:44,762 DEBUG Processing 162/784 atomic regions from SNP 48461 to 49062 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:44,815 DEBUG Processing 94/946 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:44,853 DEBUG Processing 67/1054 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:44,953 DEBUG Processing 139/786 atomic regions from SNP 41431 to 42031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:45,081 DEBUG Processing 163/784 atomic regions from SNP 48762 to 49363 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:45,153 DEBUG Processing 95/946 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:45,178 DEBUG Processing 68/1054 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:45,250 DEBUG Processing 140/786 atomic regions from SNP 41731 to 42331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:45,369 DEBUG Processing 164/784 atomic regions from SNP 49063 to 49664 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:45,446 DEBUG Processing 96/946 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:45,480 DEBUG Processing 69/1054 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:45,539 DEBUG Processing 141/786 atomic regions from SNP 42031 to 42631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:45,689 DEBUG Processing 165/784 atomic regions from SNP 49364 to 49965 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:45,786 DEBUG Processing 97/946 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:45,800 DEBUG Processing 70/1054 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:45,834 DEBUG Processing 142/786 atomic regions from SNP 42331 to 42931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:45,981 DEBUG Processing 166/784 atomic regions from SNP 49665 to 50266 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:46,096 DEBUG Processing 98/946 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:46,118 DEBUG Processing 143/786 atomic regions from SNP 42631 to 43231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:46,125 DEBUG Processing 71/1054 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:46,265 DEBUG Processing 167/784 atomic regions from SNP 49966 to 50567 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:46,402 DEBUG Processing 144/786 atomic regions from SNP 42931 to 43531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:46,402 DEBUG Processing 99/946 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:46,515 DEBUG Processing 72/1054 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:46,601 DEBUG Processing 168/784 atomic regions from SNP 50267 to 50868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:46,692 DEBUG Processing 145/786 atomic regions from SNP 43231 to 43831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:46,719 DEBUG Processing 100/946 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:46,851 DEBUG Processing 73/1054 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:46,898 DEBUG Processing 169/784 atomic regions from SNP 50568 to 51169 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:46,969 DEBUG Processing 146/786 atomic regions from SNP 43531 to 44131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:47,020 DEBUG Processing 101/946 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:47,170 DEBUG Processing 74/1054 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:47,187 DEBUG Processing 170/784 atomic regions from SNP 50869 to 51470 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:47,244 DEBUG Processing 147/786 atomic regions from SNP 43831 to 44431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:47,319 DEBUG Processing 102/946 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:47,504 DEBUG Processing 171/784 atomic regions from SNP 51170 to 51771 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:47,518 DEBUG Processing 75/1054 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:47,539 DEBUG Processing 148/786 atomic regions from SNP 44131 to 44731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:47,621 DEBUG Processing 103/946 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:47,748 DEBUG Processing 172/784 atomic regions from SNP 51471 to 52072 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:47,828 DEBUG Processing 76/1054 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:47,838 DEBUG Processing 149/786 atomic regions from SNP 44431 to 45031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:47,978 DEBUG Processing 104/946 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:47,995 DEBUG Processing 173/784 atomic regions from SNP 51772 to 52373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:48,138 DEBUG Processing 150/786 atomic regions from SNP 44731 to 45331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:48,148 DEBUG Processing 77/1054 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:48,279 DEBUG Processing 174/784 atomic regions from SNP 52073 to 52674 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:48,290 DEBUG Processing 105/946 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:48,364 DEBUG Processing 151/786 atomic regions from SNP 45031 to 45631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:48,432 DEBUG Processing 78/1054 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:48,556 DEBUG Processing 175/784 atomic regions from SNP 52374 to 52975 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:48,578 DEBUG Processing 106/946 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:48,597 DEBUG Processing 152/786 atomic regions from SNP 45331 to 45931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:48,689 DEBUG Processing 79/1054 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:48,811 DEBUG Processing 176/784 atomic regions from SNP 52675 to 53276 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:48,850 DEBUG Processing 153/786 atomic regions from SNP 45631 to 46231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:48,853 DEBUG Processing 107/946 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:48,980 DEBUG Processing 80/1054 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:49,128 DEBUG Processing 177/784 atomic regions from SNP 52976 to 53577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:49,138 DEBUG Processing 154/786 atomic regions from SNP 45931 to 46531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:49,162 DEBUG Processing 108/946 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:49,320 DEBUG Processing 81/1054 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:49,460 DEBUG Processing 178/784 atomic regions from SNP 53277 to 53878 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:49,473 DEBUG Processing 155/786 atomic regions from SNP 46231 to 46831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:49,575 DEBUG Processing 109/946 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:49,663 DEBUG Processing 82/1054 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:49,762 DEBUG Processing 179/784 atomic regions from SNP 53578 to 54179 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:49,768 DEBUG Processing 156/786 atomic regions from SNP 46531 to 47131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:49,884 DEBUG Processing 110/946 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:50,019 DEBUG Processing 83/1054 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:50,076 DEBUG Processing 180/784 atomic regions from SNP 53879 to 54480 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:50,092 DEBUG Processing 157/786 atomic regions from SNP 46831 to 47431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:50,246 DEBUG Processing 111/946 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:50,385 DEBUG Processing 84/1054 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:50,396 DEBUG Processing 181/784 atomic regions from SNP 54180 to 54781 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:50,400 DEBUG Processing 158/786 atomic regions from SNP 47131 to 47731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:50,594 DEBUG Processing 112/946 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:50,731 DEBUG Processing 182/784 atomic regions from SNP 54481 to 55082 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:50,731 DEBUG Processing 85/1054 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:50,735 DEBUG Processing 159/786 atomic regions from SNP 47431 to 48031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:50,919 DEBUG Processing 113/946 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:51,074 DEBUG Processing 160/786 atomic regions from SNP 47731 to 48331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:51,075 DEBUG Processing 183/784 atomic regions from SNP 54782 to 55383 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:51,109 DEBUG Processing 86/1054 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:51,111 DEBUG Segmenting atomic regions: 2025-01-31 09:39:51,205 DEBUG Processing 1/319 atomic regions from SNP 0 to 601 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:51,278 DEBUG Processing 114/946 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:51,382 DEBUG Processing 161/786 atomic regions from SNP 48031 to 48631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:51,399 DEBUG Processing 184/784 atomic regions from SNP 55083 to 55684 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:51,455 DEBUG Processing 87/1054 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:51,487 DEBUG Processing 2/319 atomic regions from SNP 301 to 902 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:51,640 DEBUG Processing 115/946 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:51,696 DEBUG Processing 162/786 atomic regions from SNP 48331 to 48931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:51,786 DEBUG Processing 185/784 atomic regions from SNP 55384 to 55985 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:51,830 DEBUG Processing 88/1054 atomic regions from SNP 26187 to 26787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:51,924 DEBUG Processing 3/319 atomic regions from SNP 602 to 1203 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:51,972 DEBUG Processing 163/786 atomic regions from SNP 48631 to 49231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:51,977 DEBUG Processing 116/946 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:52,015 DEBUG Processing 186/784 atomic regions from SNP 55685 to 56286 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:52,088 DEBUG Processing 89/1054 atomic regions from SNP 26487 to 27087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:52,138 DEBUG Processing 4/319 atomic regions from SNP 903 to 1504 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:52,195 DEBUG Processing 164/786 atomic regions from SNP 48931 to 49531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:52,216 DEBUG Processing 117/946 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:52,232 DEBUG Processing 187/784 atomic regions from SNP 55986 to 56587 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:52,341 DEBUG Processing 5/319 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:52,342 DEBUG Processing 90/1054 atomic regions from SNP 26787 to 27387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:52,410 DEBUG Processing 165/786 atomic regions from SNP 49231 to 49831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:52,445 DEBUG Processing 188/784 atomic regions from SNP 56287 to 56888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:52,446 DEBUG Processing 118/946 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:52,542 DEBUG Processing 6/319 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:52,594 DEBUG Processing 91/1054 atomic regions from SNP 27087 to 27687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:52,624 DEBUG Processing 166/786 atomic regions from SNP 49531 to 50131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:52,655 DEBUG Processing 189/784 atomic regions from SNP 56588 to 57189 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:52,708 DEBUG Processing 119/946 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:52,740 DEBUG Processing 7/319 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:52,834 DEBUG Processing 167/786 atomic regions from SNP 49831 to 50431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:52,842 DEBUG Processing 92/1054 atomic regions from SNP 27387 to 27987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:52,863 DEBUG Processing 190/784 atomic regions from SNP 56889 to 57490 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:52,936 DEBUG Processing 8/319 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:52,953 DEBUG Processing 120/946 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:53,050 DEBUG Processing 168/786 atomic regions from SNP 50131 to 50731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:53,074 DEBUG Processing 191/784 atomic regions from SNP 57190 to 57791 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:53,095 DEBUG Processing 93/1054 atomic regions from SNP 27687 to 28287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:53,133 DEBUG Processing 9/319 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:53,209 DEBUG Processing 121/946 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:53,260 DEBUG Processing 169/786 atomic regions from SNP 50431 to 51031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:53,283 DEBUG Processing 192/784 atomic regions from SNP 57491 to 58092 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:53,332 DEBUG Processing 10/319 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:53,346 DEBUG Processing 94/1054 atomic regions from SNP 27987 to 28587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:53,458 DEBUG Processing 122/946 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:53,474 DEBUG Processing 170/786 atomic regions from SNP 50731 to 51331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:53,495 DEBUG Processing 193/784 atomic regions from SNP 57792 to 58393 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:53,533 DEBUG Processing 11/319 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:53,600 DEBUG Processing 95/1054 atomic regions from SNP 28287 to 28887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:53,690 DEBUG Processing 171/786 atomic regions from SNP 51031 to 51631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:53,704 DEBUG Processing 123/946 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:53,709 DEBUG Processing 194/784 atomic regions from SNP 58093 to 58694 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:53,734 DEBUG Processing 12/319 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:53,851 DEBUG Processing 96/1054 atomic regions from SNP 28587 to 29187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:53,905 DEBUG Processing 172/786 atomic regions from SNP 51331 to 51931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:53,923 DEBUG Processing 195/784 atomic regions from SNP 58394 to 58995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:53,934 DEBUG Processing 13/319 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:53,938 DEBUG Processing 124/946 atomic regions from SNP 37023 to 37624 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:54,103 DEBUG Processing 97/1054 atomic regions from SNP 28887 to 29487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:54,124 DEBUG Processing 173/786 atomic regions from SNP 51631 to 52231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:54,137 DEBUG Processing 14/319 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:54,139 DEBUG Processing 196/784 atomic regions from SNP 58695 to 59296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:54,175 DEBUG Processing 125/946 atomic regions from SNP 37324 to 37925 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:54,346 DEBUG Processing 15/319 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:54,346 DEBUG Processing 174/786 atomic regions from SNP 51931 to 52531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:54,360 DEBUG Processing 197/784 atomic regions from SNP 58996 to 59597 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:54,361 DEBUG Processing 98/1054 atomic regions from SNP 29187 to 29787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:54,434 DEBUG Processing 126/946 atomic regions from SNP 37625 to 38226 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:54,551 DEBUG Processing 16/319 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:54,563 DEBUG Processing 175/786 atomic regions from SNP 52231 to 52831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:54,575 DEBUG Processing 198/784 atomic regions from SNP 59297 to 59898 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:54,617 DEBUG Processing 99/1054 atomic regions from SNP 29487 to 30087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:54,687 DEBUG Processing 127/946 atomic regions from SNP 37926 to 38527 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:54,750 DEBUG Processing 17/319 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:54,776 DEBUG Processing 176/786 atomic regions from SNP 52531 to 53131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:54,786 DEBUG Processing 199/784 atomic regions from SNP 59598 to 60199 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:54,866 DEBUG Processing 100/1054 atomic regions from SNP 29787 to 30387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:54,947 DEBUG Processing 128/946 atomic regions from SNP 38227 to 38828 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:54,954 DEBUG Processing 18/319 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:54,995 DEBUG Processing 177/786 atomic regions from SNP 52831 to 53431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:55,000 DEBUG Processing 200/784 atomic regions from SNP 59899 to 60500 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:55,119 DEBUG Processing 101/1054 atomic regions from SNP 30087 to 30687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:55,153 DEBUG Processing 19/319 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:55,200 DEBUG Processing 129/946 atomic regions from SNP 38528 to 39129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:55,207 DEBUG Processing 178/786 atomic regions from SNP 53131 to 53731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:55,209 DEBUG Processing 201/784 atomic regions from SNP 60200 to 60801 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:55,348 DEBUG Processing 20/319 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:55,363 DEBUG Processing 102/1054 atomic regions from SNP 30387 to 30987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:55,416 DEBUG Processing 179/786 atomic regions from SNP 53431 to 54031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:55,418 DEBUG Processing 202/784 atomic regions from SNP 60501 to 61102 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:55,429 DEBUG Processing 130/946 atomic regions from SNP 38829 to 39430 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:55,545 DEBUG Processing 21/319 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:55,612 DEBUG Processing 103/1054 atomic regions from SNP 30687 to 31287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:55,629 DEBUG Processing 180/786 atomic regions from SNP 53731 to 54331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:55,632 DEBUG Processing 203/784 atomic regions from SNP 60802 to 61403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:55,673 DEBUG Processing 131/946 atomic regions from SNP 39130 to 39731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:55,739 DEBUG Processing 22/319 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:55,838 DEBUG Processing 181/786 atomic regions from SNP 54031 to 54631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:55,841 DEBUG Processing 204/784 atomic regions from SNP 61103 to 61704 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:55,859 DEBUG Processing 104/1054 atomic regions from SNP 30987 to 31587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:55,907 DEBUG Processing 132/946 atomic regions from SNP 39431 to 40032 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:55,931 DEBUG Processing 23/319 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:56,049 DEBUG Processing 182/786 atomic regions from SNP 54331 to 54931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:56,052 DEBUG Processing 205/784 atomic regions from SNP 61404 to 62005 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:56,107 DEBUG Processing 105/1054 atomic regions from SNP 31287 to 31887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:56,127 DEBUG Processing 24/319 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:56,139 DEBUG Processing 133/946 atomic regions from SNP 39732 to 40333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:56,261 DEBUG Processing 183/786 atomic regions from SNP 54631 to 55231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:56,264 DEBUG Processing 206/784 atomic regions from SNP 61705 to 62306 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:56,329 DEBUG Processing 25/319 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:56,361 DEBUG Processing 106/1054 atomic regions from SNP 31587 to 32187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:56,381 DEBUG Processing 134/946 atomic regions from SNP 40033 to 40634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:56,472 DEBUG Processing 184/786 atomic regions from SNP 54931 to 55531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:56,475 DEBUG Processing 207/784 atomic regions from SNP 62006 to 62607 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:56,529 DEBUG Processing 26/319 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:56,609 DEBUG Processing 107/1054 atomic regions from SNP 31887 to 32487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:56,622 DEBUG Processing 135/946 atomic regions from SNP 40334 to 40935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:56,682 DEBUG Processing 208/784 atomic regions from SNP 62307 to 62908 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:56,683 DEBUG Processing 185/786 atomic regions from SNP 55231 to 55831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:56,729 DEBUG Processing 27/319 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:56,861 DEBUG Processing 136/946 atomic regions from SNP 40635 to 41236 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:56,865 DEBUG Processing 108/1054 atomic regions from SNP 32187 to 32787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:56,899 DEBUG Processing 209/784 atomic regions from SNP 62608 to 63209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:56,901 DEBUG Processing 186/786 atomic regions from SNP 55531 to 56131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:56,931 DEBUG Processing 28/319 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:57,088 DEBUG Processing 137/946 atomic regions from SNP 40936 to 41537 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:57,107 DEBUG Processing 210/784 atomic regions from SNP 62909 to 63509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:57,113 DEBUG Processing 187/786 atomic regions from SNP 55831 to 56431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:57,115 DEBUG Processing 109/1054 atomic regions from SNP 32487 to 33087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:57,130 DEBUG Processing 29/319 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:57,315 DEBUG Processing 211/784 atomic regions from SNP 63209 to 63809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:57,315 DEBUG Processing 138/946 atomic regions from SNP 41237 to 41838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:57,325 DEBUG Processing 188/786 atomic regions from SNP 56131 to 56731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:57,329 DEBUG Processing 30/319 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:57,365 DEBUG Processing 110/1054 atomic regions from SNP 32787 to 33387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:57,524 DEBUG Processing 212/784 atomic regions from SNP 63509 to 64109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:57,529 DEBUG Processing 31/319 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:57,538 DEBUG Processing 189/786 atomic regions from SNP 56431 to 57031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:57,544 DEBUG Processing 139/946 atomic regions from SNP 41538 to 42139 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:57,614 DEBUG Processing 111/1054 atomic regions from SNP 33087 to 33687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:57,727 DEBUG Processing 32/319 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:57,730 DEBUG Processing 213/784 atomic regions from SNP 63809 to 64409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:57,748 DEBUG Processing 190/786 atomic regions from SNP 56731 to 57331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:57,771 DEBUG Processing 140/946 atomic regions from SNP 41839 to 42440 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:57,861 DEBUG Processing 112/1054 atomic regions from SNP 33387 to 33987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:57,928 DEBUG Processing 33/319 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:57,938 DEBUG Processing 214/784 atomic regions from SNP 64109 to 64709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:57,965 DEBUG Processing 191/786 atomic regions from SNP 57031 to 57631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:57,990 DEBUG Segmenting atomic regions: 2025-01-31 09:39:58,009 DEBUG Processing 141/946 atomic regions from SNP 42140 to 42741 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:58,102 DEBUG Processing 1/598 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:39:58,117 DEBUG Processing 113/1054 atomic regions from SNP 33687 to 34287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:58,133 DEBUG Processing 34/319 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:58,151 DEBUG Processing 215/784 atomic regions from SNP 64409 to 65009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:58,180 DEBUG Processing 192/786 atomic regions from SNP 57331 to 57931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:58,259 DEBUG Processing 142/946 atomic regions from SNP 42441 to 43042 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:58,331 DEBUG Processing 2/598 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:39:58,338 DEBUG Processing 35/319 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:58,363 DEBUG Processing 216/784 atomic regions from SNP 64709 to 65309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:58,375 DEBUG Processing 114/1054 atomic regions from SNP 33987 to 34587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:58,399 DEBUG Processing 193/786 atomic regions from SNP 57631 to 58231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:58,490 DEBUG Processing 143/946 atomic regions from SNP 42742 to 43343 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:58,545 DEBUG Processing 36/319 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:58,562 DEBUG Processing 3/598 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:39:58,574 DEBUG Processing 217/784 atomic regions from SNP 65009 to 65609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:58,621 DEBUG Processing 194/786 atomic regions from SNP 57931 to 58531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:58,637 DEBUG Processing 115/1054 atomic regions from SNP 34287 to 34887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:58,719 DEBUG Processing 144/946 atomic regions from SNP 43043 to 43644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:58,750 DEBUG Processing 37/319 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:58,779 DEBUG Processing 4/598 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:39:58,793 DEBUG Processing 218/784 atomic regions from SNP 65309 to 65909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:58,842 DEBUG Processing 195/786 atomic regions from SNP 58231 to 58831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:58,893 DEBUG Processing 116/1054 atomic regions from SNP 34587 to 35187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:58,949 DEBUG Processing 38/319 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:58,953 DEBUG Processing 145/946 atomic regions from SNP 43344 to 43945 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:59,007 DEBUG Processing 219/784 atomic regions from SNP 65609 to 66209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:59,011 DEBUG Processing 5/598 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:39:59,058 DEBUG Processing 196/786 atomic regions from SNP 58531 to 59131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:59,153 DEBUG Processing 117/1054 atomic regions from SNP 34887 to 35487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:59,159 DEBUG Processing 39/319 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:59,193 DEBUG Processing 146/946 atomic regions from SNP 43645 to 44246 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:59,226 DEBUG Processing 220/784 atomic regions from SNP 65909 to 66509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:59,236 DEBUG Processing 6/598 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:39:59,276 DEBUG Processing 197/786 atomic regions from SNP 58831 to 59431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:59,363 DEBUG Processing 40/319 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:59,410 DEBUG Processing 118/1054 atomic regions from SNP 35187 to 35787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:59,423 DEBUG Processing 147/946 atomic regions from SNP 43946 to 44547 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:59,438 DEBUG Processing 221/784 atomic regions from SNP 66209 to 66809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:59,445 DEBUG Processing 7/598 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:39:59,491 DEBUG Processing 198/786 atomic regions from SNP 59131 to 59731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:59,566 DEBUG Processing 41/319 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:59,653 DEBUG Processing 222/784 atomic regions from SNP 66509 to 67109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:59,655 DEBUG Processing 148/946 atomic regions from SNP 44247 to 44848 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:59,657 DEBUG Processing 8/598 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:39:59,667 DEBUG Processing 119/1054 atomic regions from SNP 35487 to 36087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:59,714 DEBUG Processing 199/786 atomic regions from SNP 59431 to 60031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:59,778 DEBUG Processing 42/319 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 6 of 7). 2025-01-31 09:39:59,873 DEBUG Processing 223/784 atomic regions from SNP 66809 to 67409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:39:59,879 DEBUG Processing 9/598 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:39:59,904 DEBUG Processing 149/946 atomic regions from SNP 44548 to 45149 for chr2 (subchromosome 1 of 2). 2025-01-31 09:39:59,931 DEBUG Processing 120/1054 atomic regions from SNP 35787 to 36387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:39:59,943 DEBUG Processing 200/786 atomic regions from SNP 59731 to 60331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:39:59,987 DEBUG Processing 43/319 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:00,094 DEBUG Processing 224/784 atomic regions from SNP 67109 to 67709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:00,097 DEBUG Processing 10/598 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:00,161 DEBUG Processing 150/946 atomic regions from SNP 44849 to 45450 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:00,172 DEBUG Processing 201/786 atomic regions from SNP 60031 to 60631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:00,196 DEBUG Processing 121/1054 atomic regions from SNP 36087 to 36687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:00,200 DEBUG Processing 44/319 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:00,313 DEBUG Processing 11/598 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:00,316 DEBUG Processing 225/784 atomic regions from SNP 67409 to 68009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:00,398 DEBUG Processing 202/786 atomic regions from SNP 60331 to 60931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:00,411 DEBUG Processing 45/319 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:00,431 DEBUG Processing 151/946 atomic regions from SNP 45150 to 45751 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:00,458 DEBUG Processing 122/1054 atomic regions from SNP 36387 to 36987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:00,565 DEBUG Processing 12/598 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:00,575 DEBUG Processing 226/784 atomic regions from SNP 67709 to 68309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:00,682 DEBUG Processing 46/319 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:00,693 DEBUG Processing 203/786 atomic regions from SNP 60631 to 61231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:00,737 DEBUG Processing 152/946 atomic regions from SNP 45451 to 46052 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:00,749 DEBUG Processing 123/1054 atomic regions from SNP 36687 to 37287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:00,782 DEBUG Processing 13/598 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:00,794 DEBUG Processing 227/784 atomic regions from SNP 68009 to 68609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:00,992 DEBUG Processing 47/319 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:01,014 DEBUG Processing 204/786 atomic regions from SNP 60931 to 61531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:01,098 DEBUG Processing 14/598 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:01,107 DEBUG Processing 153/946 atomic regions from SNP 45752 to 46353 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:01,116 DEBUG Processing 124/1054 atomic regions from SNP 36987 to 37587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:01,128 DEBUG Processing 228/784 atomic regions from SNP 68309 to 68909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:01,318 DEBUG Processing 48/319 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:01,341 DEBUG Processing 205/786 atomic regions from SNP 61231 to 61831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:01,450 DEBUG Processing 15/598 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:01,452 DEBUG Processing 229/784 atomic regions from SNP 68609 to 69209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:01,467 DEBUG Processing 154/946 atomic regions from SNP 46053 to 46654 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:01,484 DEBUG Processing 125/1054 atomic regions from SNP 37287 to 37887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:01,543 DEBUG Processing 49/319 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:01,577 DEBUG Processing 206/786 atomic regions from SNP 61531 to 62131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:01,682 DEBUG Processing 16/598 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:01,684 DEBUG Processing 230/784 atomic regions from SNP 68909 to 69509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:01,727 DEBUG Processing 155/946 atomic regions from SNP 46354 to 46955 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:01,750 DEBUG Processing 50/319 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:01,755 DEBUG Processing 126/1054 atomic regions from SNP 37587 to 38187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:01,799 DEBUG Processing 207/786 atomic regions from SNP 61831 to 62431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:01,901 DEBUG Processing 17/598 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:01,906 DEBUG Processing 231/784 atomic regions from SNP 69209 to 69809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:01,964 DEBUG Processing 51/319 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:01,997 DEBUG Processing 156/946 atomic regions from SNP 46655 to 47256 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:02,022 DEBUG Processing 127/1054 atomic regions from SNP 37887 to 38487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:02,025 DEBUG Processing 208/786 atomic regions from SNP 62131 to 62731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:02,118 DEBUG Processing 18/598 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:02,125 DEBUG Processing 232/784 atomic regions from SNP 69509 to 70109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:02,168 DEBUG Processing 52/319 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:02,311 DEBUG Processing 209/786 atomic regions from SNP 62431 to 63031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:02,323 DEBUG Processing 157/946 atomic regions from SNP 46956 to 47557 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:02,350 DEBUG Processing 128/1054 atomic regions from SNP 38187 to 38787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:02,430 DEBUG Processing 19/598 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:02,443 DEBUG Processing 233/784 atomic regions from SNP 69809 to 70409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:02,467 DEBUG Processing 53/319 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:02,640 DEBUG Processing 210/786 atomic regions from SNP 62731 to 63331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:02,652 DEBUG Processing 158/946 atomic regions from SNP 47257 to 47858 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:02,695 DEBUG Processing 129/1054 atomic regions from SNP 38487 to 39087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:02,707 DEBUG Processing 54/319 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:02,708 DEBUG Processing 20/598 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:02,712 DEBUG Processing 234/784 atomic regions from SNP 70109 to 70709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:02,865 DEBUG Processing 211/786 atomic regions from SNP 63031 to 63631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:02,892 DEBUG Processing 159/946 atomic regions from SNP 47558 to 48159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:02,928 DEBUG Processing 55/319 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:02,938 DEBUG Processing 21/598 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:02,944 DEBUG Processing 235/784 atomic regions from SNP 70409 to 71009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:02,964 DEBUG Processing 130/1054 atomic regions from SNP 38787 to 39387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:03,098 DEBUG Processing 212/786 atomic regions from SNP 63331 to 63931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:03,179 DEBUG Processing 160/946 atomic regions from SNP 47859 to 48460 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:03,223 DEBUG Processing 22/598 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:03,229 DEBUG Processing 56/319 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:03,234 DEBUG Processing 236/784 atomic regions from SNP 70709 to 71309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:03,272 DEBUG Processing 131/1054 atomic regions from SNP 39087 to 39687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:03,323 DEBUG Processing 213/786 atomic regions from SNP 63631 to 64231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:03,482 DEBUG Processing 161/946 atomic regions from SNP 48160 to 48761 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:03,526 DEBUG Processing 23/598 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:03,526 DEBUG Processing 57/319 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:03,562 DEBUG Processing 237/784 atomic regions from SNP 71009 to 71609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:03,612 DEBUG Processing 214/786 atomic regions from SNP 63931 to 64531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:03,631 DEBUG Processing 132/1054 atomic regions from SNP 39387 to 39987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:03,766 DEBUG Processing 58/319 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:03,779 DEBUG Processing 162/946 atomic regions from SNP 48461 to 49062 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:03,794 DEBUG Processing 24/598 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:03,805 DEBUG Processing 238/784 atomic regions from SNP 71309 to 71909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:03,837 DEBUG Processing 215/786 atomic regions from SNP 64231 to 64831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:03,894 DEBUG Processing 133/1054 atomic regions from SNP 39687 to 40287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:03,980 DEBUG Processing 59/319 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:04,023 DEBUG Processing 163/946 atomic regions from SNP 48762 to 49363 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:04,027 DEBUG Processing 25/598 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:04,031 DEBUG Processing 239/784 atomic regions from SNP 71609 to 72209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:04,056 DEBUG Processing 216/786 atomic regions from SNP 64531 to 65131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:04,148 DEBUG Processing 134/1054 atomic regions from SNP 39987 to 40587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:04,186 DEBUG Processing 60/319 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:04,245 DEBUG Processing 26/598 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:04,250 DEBUG Processing 240/784 atomic regions from SNP 71909 to 72509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:04,263 DEBUG Processing 164/946 atomic regions from SNP 49063 to 49664 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:04,275 DEBUG Processing 217/786 atomic regions from SNP 64831 to 65431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:04,395 DEBUG Processing 61/319 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:04,401 DEBUG Processing 135/1054 atomic regions from SNP 40287 to 40887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:04,462 DEBUG Processing 27/598 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:04,470 DEBUG Processing 241/784 atomic regions from SNP 72209 to 72809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:04,498 DEBUG Processing 218/786 atomic regions from SNP 65131 to 65731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:04,517 DEBUG Processing 165/946 atomic regions from SNP 49364 to 49965 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:04,637 DEBUG Processing 62/319 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:04,694 DEBUG Processing 136/1054 atomic regions from SNP 40587 to 41187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:04,704 DEBUG Processing 28/598 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:04,713 DEBUG Processing 242/784 atomic regions from SNP 72509 to 73109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:04,724 DEBUG Processing 219/786 atomic regions from SNP 65431 to 66031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:04,780 DEBUG Processing 166/946 atomic regions from SNP 49665 to 50266 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:04,845 DEBUG Processing 63/319 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:04,998 DEBUG Processing 29/598 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:05,014 DEBUG Processing 137/1054 atomic regions from SNP 40887 to 41487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:05,015 DEBUG Processing 220/786 atomic regions from SNP 65731 to 66331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:05,023 DEBUG Processing 243/784 atomic regions from SNP 72809 to 73409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:05,124 DEBUG Processing 64/319 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:05,125 DEBUG Processing 167/946 atomic regions from SNP 49966 to 50567 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:05,306 DEBUG Processing 30/598 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:05,326 DEBUG Processing 221/786 atomic regions from SNP 66031 to 66631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:05,353 DEBUG Processing 244/784 atomic regions from SNP 73109 to 73709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:05,365 DEBUG Processing 138/1054 atomic regions from SNP 41187 to 41787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:05,411 DEBUG Processing 65/319 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:05,468 DEBUG Processing 168/946 atomic regions from SNP 50267 to 50868 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:05,599 DEBUG Processing 31/598 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:05,666 DEBUG Processing 222/786 atomic regions from SNP 66331 to 66931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:05,689 DEBUG Processing 245/784 atomic regions from SNP 73409 to 74009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:05,707 DEBUG Processing 66/319 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:05,724 DEBUG Processing 139/1054 atomic regions from SNP 41487 to 42087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:05,807 DEBUG Processing 169/946 atomic regions from SNP 50568 to 51169 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:05,822 DEBUG Processing 32/598 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:05,980 DEBUG Processing 223/786 atomic regions from SNP 66631 to 67231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:06,008 DEBUG Processing 246/784 atomic regions from SNP 73709 to 74309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:06,009 DEBUG Processing 67/319 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:06,081 DEBUG Processing 140/1054 atomic regions from SNP 41787 to 42387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:06,135 DEBUG Processing 33/598 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:06,161 DEBUG Processing 170/946 atomic regions from SNP 50869 to 51470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:06,307 DEBUG Processing 224/786 atomic regions from SNP 66931 to 67531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:06,321 DEBUG Processing 68/319 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:06,328 DEBUG Processing 247/784 atomic regions from SNP 74009 to 74609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:06,414 DEBUG Processing 34/598 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:06,430 DEBUG Processing 141/1054 atomic regions from SNP 42087 to 42687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:06,447 DEBUG Processing 171/946 atomic regions from SNP 51170 to 51771 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:06,535 DEBUG Processing 69/319 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:06,548 DEBUG Processing 225/786 atomic regions from SNP 67231 to 67831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:06,553 DEBUG Processing 248/784 atomic regions from SNP 74309 to 74909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:06,635 DEBUG Processing 35/598 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:06,689 DEBUG Processing 172/946 atomic regions from SNP 51471 to 52072 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:06,696 DEBUG Processing 142/1054 atomic regions from SNP 42387 to 42987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:06,741 DEBUG Processing 70/319 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:06,766 DEBUG Processing 249/784 atomic regions from SNP 74609 to 75209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:06,767 DEBUG Processing 226/786 atomic regions from SNP 67531 to 68131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:06,850 DEBUG Processing 36/598 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:06,989 DEBUG Processing 173/946 atomic regions from SNP 51772 to 52373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:06,997 DEBUG Processing 71/319 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:07,033 DEBUG Processing 143/1054 atomic regions from SNP 42687 to 43287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:07,044 DEBUG Processing 227/786 atomic regions from SNP 67831 to 68431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:07,045 DEBUG Processing 250/784 atomic regions from SNP 74909 to 75509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:07,134 DEBUG Processing 37/598 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:07,203 DEBUG Processing 72/319 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:07,223 DEBUG Processing 174/946 atomic regions from SNP 52073 to 52674 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:07,263 DEBUG Processing 251/784 atomic regions from SNP 75209 to 75809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:07,266 DEBUG Processing 228/786 atomic regions from SNP 68131 to 68731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:07,285 DEBUG Processing 144/1054 atomic regions from SNP 42987 to 43587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:07,346 DEBUG Processing 38/598 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:07,406 DEBUG Processing 73/319 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:07,454 DEBUG Processing 175/946 atomic regions from SNP 52374 to 52975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:07,474 DEBUG Processing 252/784 atomic regions from SNP 75509 to 76109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:07,483 DEBUG Processing 229/786 atomic regions from SNP 68431 to 69031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:07,536 DEBUG Processing 145/1054 atomic regions from SNP 43287 to 43887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:07,553 DEBUG Processing 39/598 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:07,606 DEBUG Processing 74/319 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:07,688 DEBUG Processing 253/784 atomic regions from SNP 75809 to 76409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:07,688 DEBUG Processing 176/946 atomic regions from SNP 52675 to 53276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:07,701 DEBUG Processing 230/786 atomic regions from SNP 68731 to 69331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:07,765 DEBUG Processing 40/598 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:07,792 DEBUG Processing 146/1054 atomic regions from SNP 43587 to 44187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:07,809 DEBUG Processing 75/319 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:07,902 DEBUG Processing 254/784 atomic regions from SNP 76109 to 76709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:07,921 DEBUG Processing 231/786 atomic regions from SNP 69031 to 69631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:07,923 DEBUG Processing 177/946 atomic regions from SNP 52976 to 53577 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:07,975 DEBUG Processing 41/598 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:08,018 DEBUG Processing 76/319 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:08,055 DEBUG Processing 147/1054 atomic regions from SNP 43887 to 44487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:08,121 DEBUG Processing 255/784 atomic regions from SNP 76409 to 77009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:08,149 DEBUG Processing 232/786 atomic regions from SNP 69331 to 69931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:08,164 DEBUG Processing 178/946 atomic regions from SNP 53277 to 53878 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:08,191 DEBUG Processing 42/598 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:08,226 DEBUG Processing 77/319 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:08,314 DEBUG Processing 148/1054 atomic regions from SNP 44187 to 44787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:08,337 DEBUG Processing 256/784 atomic regions from SNP 76709 to 77309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:08,371 DEBUG Processing 233/786 atomic regions from SNP 69631 to 70231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:08,404 DEBUG Processing 179/946 atomic regions from SNP 53578 to 54179 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:08,407 DEBUG Processing 43/598 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:08,434 DEBUG Processing 78/319 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:08,551 DEBUG Processing 257/784 atomic regions from SNP 77009 to 77609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:08,581 DEBUG Processing 149/1054 atomic regions from SNP 44487 to 45087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:08,591 DEBUG Processing 234/786 atomic regions from SNP 69931 to 70531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:08,620 DEBUG Processing 44/598 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:08,639 DEBUG Processing 79/319 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:08,644 DEBUG Processing 180/946 atomic regions from SNP 53879 to 54480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:08,765 DEBUG Processing 258/784 atomic regions from SNP 77309 to 77909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:08,812 DEBUG Processing 235/786 atomic regions from SNP 70231 to 70831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:08,842 DEBUG Processing 45/598 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:08,842 DEBUG Processing 150/1054 atomic regions from SNP 44787 to 45387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:08,848 DEBUG Processing 80/319 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:08,911 DEBUG Processing 181/946 atomic regions from SNP 54180 to 54781 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:09,053 DEBUG Processing 259/784 atomic regions from SNP 77609 to 78209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:09,125 DEBUG Processing 236/786 atomic regions from SNP 70531 to 71131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:09,146 DEBUG Processing 81/319 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:09,151 DEBUG Processing 46/598 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:09,190 DEBUG Processing 151/1054 atomic regions from SNP 45087 to 45687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:09,265 DEBUG Processing 182/946 atomic regions from SNP 54481 to 55082 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:09,325 DEBUG Processing 260/784 atomic regions from SNP 77909 to 78509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:09,408 DEBUG Processing 82/319 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:09,409 DEBUG Processing 237/786 atomic regions from SNP 70831 to 71431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:09,419 DEBUG Processing 47/598 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:09,490 DEBUG Processing 152/1054 atomic regions from SNP 45387 to 45987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:09,524 DEBUG Processing 183/946 atomic regions from SNP 54782 to 55383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:09,545 DEBUG Processing 261/784 atomic regions from SNP 78209 to 78809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:09,614 DEBUG Processing 83/319 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:09,627 DEBUG Processing 48/598 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:09,636 DEBUG Processing 238/786 atomic regions from SNP 71131 to 71731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:09,748 DEBUG Processing 153/1054 atomic regions from SNP 45687 to 46287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:09,756 DEBUG Processing 262/784 atomic regions from SNP 78509 to 79109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:09,757 DEBUG Processing 184/946 atomic regions from SNP 55083 to 55684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:09,816 DEBUG Processing 84/319 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:09,835 DEBUG Processing 49/598 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:09,849 DEBUG Processing 239/786 atomic regions from SNP 71431 to 72031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:09,966 DEBUG Processing 263/784 atomic regions from SNP 78809 to 79409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:09,988 DEBUG Processing 185/946 atomic regions from SNP 55384 to 55985 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:10,018 DEBUG Processing 85/319 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:10,024 DEBUG Processing 154/1054 atomic regions from SNP 45987 to 46587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:10,041 DEBUG Processing 50/598 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:10,061 DEBUG Processing 240/786 atomic regions from SNP 71731 to 72331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:10,175 DEBUG Processing 264/784 atomic regions from SNP 79109 to 79709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:10,218 DEBUG Processing 186/946 atomic regions from SNP 55685 to 56286 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:10,223 DEBUG Processing 86/319 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:10,255 DEBUG Processing 51/598 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:10,280 DEBUG Processing 241/786 atomic regions from SNP 72031 to 72631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:10,281 DEBUG Processing 155/1054 atomic regions from SNP 46287 to 46887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:10,385 DEBUG Processing 265/784 atomic regions from SNP 79409 to 80009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:10,428 DEBUG Processing 87/319 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:10,452 DEBUG Processing 187/946 atomic regions from SNP 55986 to 56587 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:10,464 DEBUG Processing 52/598 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:10,495 DEBUG Processing 242/786 atomic regions from SNP 72331 to 72931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:10,545 DEBUG Processing 156/1054 atomic regions from SNP 46587 to 47187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:10,592 DEBUG Processing 266/784 atomic regions from SNP 79709 to 80309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:10,634 DEBUG Processing 88/319 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:10,678 DEBUG Processing 53/598 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:10,686 DEBUG Processing 188/946 atomic regions from SNP 56287 to 56888 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:10,710 DEBUG Processing 243/786 atomic regions from SNP 72631 to 73231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:10,795 DEBUG Processing 157/1054 atomic regions from SNP 46887 to 47487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:10,804 DEBUG Processing 267/784 atomic regions from SNP 80009 to 80609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:10,834 DEBUG Processing 89/319 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:10,888 DEBUG Processing 54/598 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:10,915 DEBUG Processing 189/946 atomic regions from SNP 56588 to 57189 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:10,925 DEBUG Processing 244/786 atomic regions from SNP 72931 to 73531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:11,014 DEBUG Processing 268/784 atomic regions from SNP 80309 to 80909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:11,037 DEBUG Processing 90/319 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:11,044 DEBUG Processing 158/1054 atomic regions from SNP 47187 to 47787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:11,093 DEBUG Processing 55/598 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:11,131 DEBUG Processing 245/786 atomic regions from SNP 73231 to 73831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:11,143 DEBUG Processing 190/946 atomic regions from SNP 56889 to 57490 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:11,216 DEBUG Processing 269/784 atomic regions from SNP 80609 to 81209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:11,247 DEBUG Processing 91/319 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:11,288 DEBUG Processing 159/1054 atomic regions from SNP 47487 to 48087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:11,293 DEBUG Processing 56/598 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:11,337 DEBUG Processing 246/786 atomic regions from SNP 73531 to 74131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:11,367 DEBUG Processing 191/946 atomic regions from SNP 57190 to 57791 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:11,423 DEBUG Processing 270/784 atomic regions from SNP 80909 to 81509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:11,462 DEBUG Processing 92/319 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:11,501 DEBUG Processing 57/598 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:11,535 DEBUG Processing 160/1054 atomic regions from SNP 47787 to 48387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:11,549 DEBUG Processing 247/786 atomic regions from SNP 73831 to 74431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:11,601 DEBUG Processing 192/946 atomic regions from SNP 57491 to 58092 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:11,635 DEBUG Processing 271/784 atomic regions from SNP 81209 to 81809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:11,680 DEBUG Processing 93/319 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:11,711 DEBUG Processing 58/598 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:11,762 DEBUG Processing 248/786 atomic regions from SNP 74131 to 74731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:11,785 DEBUG Processing 161/1054 atomic regions from SNP 48087 to 48687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:11,835 DEBUG Processing 193/946 atomic regions from SNP 57792 to 58393 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:11,848 DEBUG Processing 272/784 atomic regions from SNP 81509 to 82109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:11,895 DEBUG Processing 94/319 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:11,924 DEBUG Processing 59/598 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:11,978 DEBUG Processing 249/786 atomic regions from SNP 74431 to 75031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:12,035 DEBUG Processing 162/1054 atomic regions from SNP 48387 to 48987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:12,061 DEBUG Processing 273/784 atomic regions from SNP 81809 to 82409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:12,070 DEBUG Processing 194/946 atomic regions from SNP 58093 to 58694 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:12,109 DEBUG Processing 95/319 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:12,134 DEBUG Processing 60/598 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:12,188 DEBUG Processing 250/786 atomic regions from SNP 74731 to 75331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:12,276 DEBUG Processing 274/784 atomic regions from SNP 82109 to 82709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:12,282 DEBUG Processing 163/1054 atomic regions from SNP 48687 to 49287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:12,304 DEBUG Processing 195/946 atomic regions from SNP 58394 to 58995 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:12,308 DEBUG Processing 96/319 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:12,348 DEBUG Processing 61/598 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:12,400 DEBUG Processing 251/786 atomic regions from SNP 75031 to 75631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:12,499 DEBUG Processing 275/784 atomic regions from SNP 82409 to 83009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:12,512 DEBUG Processing 97/319 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:12,544 DEBUG Processing 164/1054 atomic regions from SNP 48987 to 49587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:12,550 DEBUG Processing 196/946 atomic regions from SNP 58695 to 59296 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:12,570 DEBUG Processing 62/598 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:12,619 DEBUG Processing 252/786 atomic regions from SNP 75331 to 75931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:12,727 DEBUG Processing 98/319 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:12,737 DEBUG Processing 276/784 atomic regions from SNP 82709 to 83309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:12,802 DEBUG Processing 63/598 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:12,806 DEBUG Processing 197/946 atomic regions from SNP 58996 to 59597 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:12,829 DEBUG Processing 165/1054 atomic regions from SNP 49287 to 49887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:12,841 DEBUG Processing 253/786 atomic regions from SNP 75631 to 76231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:12,931 DEBUG Processing 99/319 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:12,955 DEBUG Processing 277/784 atomic regions from SNP 83009 to 83609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:13,019 DEBUG Processing 64/598 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:13,046 DEBUG Processing 198/946 atomic regions from SNP 59297 to 59898 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:13,060 DEBUG Processing 254/786 atomic regions from SNP 75931 to 76531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:13,104 DEBUG Processing 166/1054 atomic regions from SNP 49587 to 50187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:13,136 DEBUG Processing 100/319 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:13,176 DEBUG Processing 278/784 atomic regions from SNP 83309 to 83909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:13,241 DEBUG Processing 65/598 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:13,283 DEBUG Processing 255/786 atomic regions from SNP 76231 to 76831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:13,289 DEBUG Processing 199/946 atomic regions from SNP 59598 to 60199 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:13,345 DEBUG Processing 101/319 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:13,393 DEBUG Processing 167/1054 atomic regions from SNP 49887 to 50487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:13,395 DEBUG Processing 279/784 atomic regions from SNP 83609 to 84209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:13,457 DEBUG Processing 66/598 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:13,501 DEBUG Processing 256/786 atomic regions from SNP 76531 to 77131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:13,525 DEBUG Processing 200/946 atomic regions from SNP 59899 to 60500 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:13,546 DEBUG Processing 102/319 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:13,609 DEBUG Processing 280/784 atomic regions from SNP 83909 to 84509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:13,643 DEBUG Processing 168/1054 atomic regions from SNP 50187 to 50787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:13,671 DEBUG Processing 67/598 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:13,716 DEBUG Processing 257/786 atomic regions from SNP 76831 to 77431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:13,745 DEBUG Processing 103/319 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:13,763 DEBUG Processing 201/946 atomic regions from SNP 60200 to 60801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:13,828 DEBUG Processing 281/784 atomic regions from SNP 84209 to 84809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:13,888 DEBUG Processing 68/598 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:13,897 DEBUG Processing 169/1054 atomic regions from SNP 50487 to 51087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:13,932 DEBUG Processing 258/786 atomic regions from SNP 77131 to 77731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:13,945 DEBUG Processing 104/319 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:13,995 DEBUG Processing 202/946 atomic regions from SNP 60501 to 61102 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:14,039 DEBUG Processing 282/784 atomic regions from SNP 84509 to 85109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:14,100 DEBUG Processing 69/598 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:14,151 DEBUG Processing 259/786 atomic regions from SNP 77431 to 78031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:14,152 DEBUG Processing 105/319 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:14,154 DEBUG Processing 170/1054 atomic regions from SNP 50787 to 51387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:14,235 DEBUG Processing 203/946 atomic regions from SNP 60802 to 61403 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:14,256 DEBUG Processing 283/784 atomic regions from SNP 84809 to 85409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:14,313 DEBUG Processing 70/598 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:14,360 DEBUG Processing 106/319 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:14,373 DEBUG Processing 260/786 atomic regions from SNP 77731 to 78331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:14,411 DEBUG Processing 171/1054 atomic regions from SNP 51087 to 51687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:14,474 DEBUG Processing 204/946 atomic regions from SNP 61103 to 61704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:14,474 DEBUG Processing 284/784 atomic regions from SNP 85109 to 85709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:14,527 DEBUG Processing 71/598 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:14,560 DEBUG Processing 107/319 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:14,585 DEBUG Processing 261/786 atomic regions from SNP 78031 to 78631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:14,658 DEBUG Processing 172/1054 atomic regions from SNP 51387 to 51987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:14,688 DEBUG Processing 285/784 atomic regions from SNP 85409 to 86009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:14,708 DEBUG Processing 205/946 atomic regions from SNP 61404 to 62005 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:14,742 DEBUG Processing 72/598 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:14,773 DEBUG Processing 108/319 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:14,806 DEBUG Processing 262/786 atomic regions from SNP 78331 to 78931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:14,913 DEBUG Processing 286/784 atomic regions from SNP 85709 to 86309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:14,916 DEBUG Processing 173/1054 atomic regions from SNP 51687 to 52287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:14,955 DEBUG Processing 206/946 atomic regions from SNP 61705 to 62306 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:14,970 DEBUG Processing 73/598 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:14,979 DEBUG Processing 109/319 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:15,023 DEBUG Processing 263/786 atomic regions from SNP 78631 to 79231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:15,132 DEBUG Processing 287/784 atomic regions from SNP 86009 to 86609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:15,175 DEBUG Processing 174/1054 atomic regions from SNP 51987 to 52587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:15,188 DEBUG Processing 110/319 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:15,192 DEBUG Processing 74/598 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:15,201 DEBUG Processing 207/946 atomic regions from SNP 62006 to 62607 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:15,241 DEBUG Processing 264/786 atomic regions from SNP 78931 to 79531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:15,349 DEBUG Processing 288/784 atomic regions from SNP 86309 to 86909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:15,395 DEBUG Processing 111/319 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:15,411 DEBUG Processing 75/598 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:15,445 DEBUG Processing 208/946 atomic regions from SNP 62307 to 62908 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:15,455 DEBUG Processing 265/786 atomic regions from SNP 79231 to 79831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:15,458 DEBUG Processing 175/1054 atomic regions from SNP 52287 to 52887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:15,562 DEBUG Processing 289/784 atomic regions from SNP 86609 to 87209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:15,598 DEBUG Processing 112/319 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:15,624 DEBUG Processing 76/598 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:15,674 DEBUG Processing 266/786 atomic regions from SNP 79531 to 80131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:15,680 DEBUG Processing 209/946 atomic regions from SNP 62608 to 63209 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:15,713 DEBUG Processing 176/1054 atomic regions from SNP 52587 to 53187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:15,770 DEBUG Processing 290/784 atomic regions from SNP 86909 to 87509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:15,795 DEBUG Processing 113/319 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:15,831 DEBUG Processing 77/598 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:15,886 DEBUG Processing 267/786 atomic regions from SNP 79831 to 80431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:15,911 DEBUG Processing 210/946 atomic regions from SNP 62909 to 63510 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:15,965 DEBUG Processing 177/1054 atomic regions from SNP 52887 to 53487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:15,985 DEBUG Processing 291/784 atomic regions from SNP 87209 to 87809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:16,004 DEBUG Processing 114/319 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:16,040 DEBUG Processing 78/598 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:16,106 DEBUG Processing 268/786 atomic regions from SNP 80131 to 80731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:16,148 DEBUG Processing 211/946 atomic regions from SNP 63210 to 63811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:16,200 DEBUG Processing 292/784 atomic regions from SNP 87509 to 88109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:16,206 DEBUG Processing 115/319 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:16,220 DEBUG Processing 178/1054 atomic regions from SNP 53187 to 53787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:16,253 DEBUG Processing 79/598 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:16,320 DEBUG Processing 269/786 atomic regions from SNP 80431 to 81031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:16,386 DEBUG Processing 212/946 atomic regions from SNP 63511 to 64111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:16,412 DEBUG Processing 116/319 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:16,417 DEBUG Processing 293/784 atomic regions from SNP 87809 to 88409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:16,463 DEBUG Processing 80/598 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:16,477 DEBUG Processing 179/1054 atomic regions from SNP 53487 to 54087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:16,541 DEBUG Processing 270/786 atomic regions from SNP 80731 to 81331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:16,614 DEBUG Processing 117/319 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:16,619 DEBUG Processing 213/946 atomic regions from SNP 63811 to 64411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:16,631 DEBUG Processing 294/784 atomic regions from SNP 88109 to 88709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:16,674 DEBUG Processing 81/598 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:16,733 DEBUG Processing 180/1054 atomic regions from SNP 53787 to 54387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:16,768 DEBUG Processing 271/786 atomic regions from SNP 81031 to 81631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:16,825 DEBUG Processing 118/319 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:16,850 DEBUG Processing 295/784 atomic regions from SNP 88409 to 89009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:16,860 DEBUG Processing 214/946 atomic regions from SNP 64111 to 64711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:16,890 DEBUG Processing 82/598 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:16,992 DEBUG Processing 181/1054 atomic regions from SNP 54087 to 54687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:16,997 DEBUG Processing 272/786 atomic regions from SNP 81331 to 81931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:17,040 DEBUG Processing 119/319 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:17,078 DEBUG Processing 296/784 atomic regions from SNP 88709 to 89309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:17,104 DEBUG Processing 215/946 atomic regions from SNP 64411 to 65011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:17,111 DEBUG Processing 83/598 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:17,227 DEBUG Processing 273/786 atomic regions from SNP 81631 to 82231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:17,256 DEBUG Processing 120/319 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:17,259 DEBUG Processing 182/1054 atomic regions from SNP 54387 to 54987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:17,301 DEBUG Processing 297/784 atomic regions from SNP 89009 to 89609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:17,326 DEBUG Processing 84/598 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:17,344 DEBUG Processing 216/946 atomic regions from SNP 64711 to 65311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:17,448 DEBUG Processing 274/786 atomic regions from SNP 81931 to 82531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:17,469 DEBUG Processing 121/319 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:17,520 DEBUG Processing 298/784 atomic regions from SNP 89309 to 89909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:17,521 DEBUG Processing 183/1054 atomic regions from SNP 54687 to 55287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:17,543 DEBUG Processing 85/598 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:17,583 DEBUG Processing 217/946 atomic regions from SNP 65011 to 65611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:17,667 DEBUG Processing 275/786 atomic regions from SNP 82231 to 82831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:17,679 DEBUG Processing 122/319 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:17,737 DEBUG Processing 299/784 atomic regions from SNP 89609 to 90209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:17,755 DEBUG Processing 86/598 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:17,778 DEBUG Processing 184/1054 atomic regions from SNP 54987 to 55587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:17,818 DEBUG Processing 218/946 atomic regions from SNP 65311 to 65911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:17,882 DEBUG Processing 123/319 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:17,885 DEBUG Processing 276/786 atomic regions from SNP 82531 to 83131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:17,954 DEBUG Processing 300/784 atomic regions from SNP 89909 to 90509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:17,969 DEBUG Processing 87/598 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:18,030 DEBUG Processing 185/1054 atomic regions from SNP 55287 to 55887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:18,055 DEBUG Processing 219/946 atomic regions from SNP 65611 to 66211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:18,086 DEBUG Processing 124/319 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:18,103 DEBUG Processing 277/786 atomic regions from SNP 82831 to 83431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:18,169 DEBUG Processing 301/784 atomic regions from SNP 90209 to 90809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:18,182 DEBUG Processing 88/598 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:18,295 DEBUG Processing 186/1054 atomic regions from SNP 55587 to 56187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:18,297 DEBUG Processing 220/946 atomic regions from SNP 65911 to 66511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:18,301 DEBUG Processing 125/319 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:18,332 DEBUG Processing 278/786 atomic regions from SNP 83131 to 83731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:18,385 DEBUG Processing 302/784 atomic regions from SNP 90509 to 91109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:18,395 DEBUG Processing 89/598 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:18,503 DEBUG Processing 126/319 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:18,536 DEBUG Processing 221/946 atomic regions from SNP 66211 to 66811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:18,547 DEBUG Processing 279/786 atomic regions from SNP 83431 to 84031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:18,548 DEBUG Processing 187/1054 atomic regions from SNP 55887 to 56487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:18,601 DEBUG Processing 303/784 atomic regions from SNP 90809 to 91409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:18,606 DEBUG Processing 90/598 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:18,702 DEBUG Processing 127/319 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:18,763 DEBUG Processing 280/786 atomic regions from SNP 83731 to 84331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:18,771 DEBUG Processing 222/946 atomic regions from SNP 66511 to 67111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:18,799 DEBUG Processing 188/1054 atomic regions from SNP 56187 to 56787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:18,816 DEBUG Processing 304/784 atomic regions from SNP 91109 to 91709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:18,816 DEBUG Processing 91/598 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:18,898 DEBUG Processing 128/319 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:18,978 DEBUG Processing 281/786 atomic regions from SNP 84031 to 84631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:19,010 DEBUG Processing 223/946 atomic regions from SNP 66811 to 67411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:19,032 DEBUG Processing 92/598 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:19,035 DEBUG Processing 305/784 atomic regions from SNP 91409 to 92009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:19,052 DEBUG Processing 189/1054 atomic regions from SNP 56487 to 57087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:19,095 DEBUG Processing 129/319 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:19,188 DEBUG Processing 282/786 atomic regions from SNP 84331 to 84931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:19,247 DEBUG Processing 93/598 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:19,249 DEBUG Processing 224/946 atomic regions from SNP 67111 to 67711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:19,253 DEBUG Processing 306/784 atomic regions from SNP 91709 to 92309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:19,294 DEBUG Processing 130/319 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:19,302 DEBUG Processing 190/1054 atomic regions from SNP 56787 to 57387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:19,402 DEBUG Processing 283/786 atomic regions from SNP 84631 to 85231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:19,466 DEBUG Processing 94/598 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:19,475 DEBUG Processing 307/784 atomic regions from SNP 92009 to 92609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:19,493 DEBUG Processing 225/946 atomic regions from SNP 67411 to 68011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:19,500 DEBUG Processing 131/319 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:19,562 DEBUG Processing 191/1054 atomic regions from SNP 57087 to 57687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:19,620 DEBUG Processing 284/786 atomic regions from SNP 84931 to 85531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:19,684 DEBUG Processing 95/598 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:19,697 DEBUG Processing 308/784 atomic regions from SNP 92309 to 92909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:19,704 DEBUG Processing 132/319 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:19,735 DEBUG Processing 226/946 atomic regions from SNP 67711 to 68311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:19,810 DEBUG Processing 192/1054 atomic regions from SNP 57387 to 57987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:19,832 DEBUG Processing 285/786 atomic regions from SNP 85231 to 85831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:19,894 DEBUG Processing 96/598 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:19,901 DEBUG Processing 133/319 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:19,911 DEBUG Processing 309/784 atomic regions from SNP 92609 to 93209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:19,970 DEBUG Processing 227/946 atomic regions from SNP 68011 to 68611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:20,042 DEBUG Processing 286/786 atomic regions from SNP 85531 to 86131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:20,057 DEBUG Processing 193/1054 atomic regions from SNP 57687 to 58287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:20,100 DEBUG Processing 134/319 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:20,108 DEBUG Processing 97/598 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:20,128 DEBUG Processing 310/784 atomic regions from SNP 92909 to 93509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:20,207 DEBUG Processing 228/946 atomic regions from SNP 68311 to 68911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:20,258 DEBUG Processing 287/786 atomic regions from SNP 85831 to 86431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:20,303 DEBUG Processing 135/319 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:20,310 DEBUG Processing 194/1054 atomic regions from SNP 57987 to 58587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:20,323 DEBUG Processing 98/598 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:20,345 DEBUG Processing 311/784 atomic regions from SNP 93209 to 93809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:20,442 DEBUG Processing 229/946 atomic regions from SNP 68611 to 69211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:20,471 DEBUG Processing 288/786 atomic regions from SNP 86131 to 86731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:20,502 DEBUG Processing 136/319 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:20,533 DEBUG Processing 99/598 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:20,559 DEBUG Processing 312/784 atomic regions from SNP 93509 to 94109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:20,559 DEBUG Processing 195/1054 atomic regions from SNP 58287 to 58887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:20,675 DEBUG Processing 230/946 atomic regions from SNP 68911 to 69511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:20,682 DEBUG Processing 289/786 atomic regions from SNP 86431 to 87031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:20,700 DEBUG Processing 137/319 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:20,746 DEBUG Processing 100/598 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:20,774 DEBUG Processing 313/784 atomic regions from SNP 93809 to 94409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:20,804 DEBUG Processing 196/1054 atomic regions from SNP 58587 to 59187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:20,898 DEBUG Processing 290/786 atomic regions from SNP 86731 to 87331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:20,901 DEBUG Processing 138/319 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:20,911 DEBUG Processing 231/946 atomic regions from SNP 69211 to 69811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:20,959 DEBUG Processing 101/598 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:20,987 DEBUG Processing 314/784 atomic regions from SNP 94109 to 94709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:21,049 DEBUG Processing 197/1054 atomic regions from SNP 58887 to 59487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:21,102 DEBUG Processing 139/319 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:21,114 DEBUG Processing 291/786 atomic regions from SNP 87031 to 87631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:21,150 DEBUG Processing 232/946 atomic regions from SNP 69511 to 70111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:21,187 DEBUG Processing 102/598 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:21,206 DEBUG Processing 315/784 atomic regions from SNP 94409 to 95009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:21,302 DEBUG Processing 198/1054 atomic regions from SNP 59187 to 59787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:21,310 DEBUG Processing 140/319 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:21,335 DEBUG Processing 292/786 atomic regions from SNP 87331 to 87931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:21,397 DEBUG Processing 233/946 atomic regions from SNP 69811 to 70411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:21,410 DEBUG Processing 103/598 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:21,430 DEBUG Processing 316/784 atomic regions from SNP 94709 to 95309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:21,510 DEBUG Processing 141/319 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:21,552 DEBUG Processing 293/786 atomic regions from SNP 87631 to 88231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:21,554 DEBUG Processing 199/1054 atomic regions from SNP 59487 to 60087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:21,624 DEBUG Processing 104/598 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:21,637 DEBUG Processing 234/946 atomic regions from SNP 70111 to 70711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:21,648 DEBUG Processing 317/784 atomic regions from SNP 95009 to 95609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:21,707 DEBUG Processing 142/319 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:21,766 DEBUG Processing 294/786 atomic regions from SNP 87931 to 88531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:21,804 DEBUG Processing 200/1054 atomic regions from SNP 59787 to 60387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:21,841 DEBUG Processing 105/598 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:21,871 DEBUG Processing 318/784 atomic regions from SNP 95309 to 95909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:21,879 DEBUG Processing 235/946 atomic regions from SNP 70411 to 71011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:21,911 DEBUG Processing 143/319 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:21,982 DEBUG Processing 295/786 atomic regions from SNP 88231 to 88831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:22,060 DEBUG Processing 201/1054 atomic regions from SNP 60087 to 60687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:22,061 DEBUG Processing 106/598 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:22,095 DEBUG Processing 319/784 atomic regions from SNP 95609 to 96209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:22,113 DEBUG Processing 144/319 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:22,123 DEBUG Processing 236/946 atomic regions from SNP 70711 to 71311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:22,195 DEBUG Processing 296/786 atomic regions from SNP 88531 to 89131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:22,277 DEBUG Processing 107/598 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:22,316 DEBUG Processing 202/1054 atomic regions from SNP 60387 to 60987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:22,318 DEBUG Processing 320/784 atomic regions from SNP 95909 to 96509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:22,319 DEBUG Processing 145/319 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:22,367 DEBUG Processing 237/946 atomic regions from SNP 71011 to 71611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:22,414 DEBUG Processing 297/786 atomic regions from SNP 88831 to 89431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:22,498 DEBUG Processing 108/598 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:22,535 DEBUG Processing 146/319 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:22,547 DEBUG Processing 321/784 atomic regions from SNP 96209 to 96809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:22,581 DEBUG Processing 203/1054 atomic regions from SNP 60687 to 61287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:22,616 DEBUG Processing 238/946 atomic regions from SNP 71311 to 71911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:22,655 DEBUG Processing 298/786 atomic regions from SNP 89131 to 89731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:22,713 DEBUG Processing 109/598 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:22,739 DEBUG Processing 147/319 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:22,768 DEBUG Processing 322/784 atomic regions from SNP 96509 to 97109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:22,834 DEBUG Processing 204/1054 atomic regions from SNP 60987 to 61587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:22,856 DEBUG Processing 239/946 atomic regions from SNP 71611 to 72211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:22,877 DEBUG Processing 299/786 atomic regions from SNP 89431 to 90031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:22,926 DEBUG Processing 110/598 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:22,941 DEBUG Processing 148/319 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:22,987 DEBUG Processing 323/784 atomic regions from SNP 96809 to 97409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:23,085 DEBUG Processing 205/1054 atomic regions from SNP 61287 to 61887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:23,092 DEBUG Processing 240/946 atomic regions from SNP 71911 to 72511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:23,093 DEBUG Processing 300/786 atomic regions from SNP 89731 to 90331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:23,141 DEBUG Processing 111/598 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:23,143 DEBUG Processing 149/319 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:23,204 DEBUG Processing 324/784 atomic regions from SNP 97109 to 97709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:23,312 DEBUG Processing 301/786 atomic regions from SNP 90031 to 90631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:23,332 DEBUG Processing 241/946 atomic regions from SNP 72211 to 72811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:23,337 DEBUG Processing 206/1054 atomic regions from SNP 61587 to 62187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:23,345 DEBUG Processing 150/319 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:23,359 DEBUG Processing 112/598 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:23,426 DEBUG Processing 325/784 atomic regions from SNP 97409 to 98009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:23,532 DEBUG Processing 302/786 atomic regions from SNP 90331 to 90931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:23,552 DEBUG Processing 151/319 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:23,573 DEBUG Processing 242/946 atomic regions from SNP 72511 to 73111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:23,575 DEBUG Processing 113/598 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:23,593 DEBUG Processing 207/1054 atomic regions from SNP 61887 to 62487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:23,649 DEBUG Processing 326/784 atomic regions from SNP 97709 to 98309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:23,751 DEBUG Processing 303/786 atomic regions from SNP 90631 to 91231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:23,758 DEBUG Processing 152/319 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:23,798 DEBUG Processing 114/598 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:23,819 DEBUG Processing 243/946 atomic regions from SNP 72811 to 73411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:23,849 DEBUG Processing 208/1054 atomic regions from SNP 62187 to 62787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:23,872 DEBUG Processing 327/784 atomic regions from SNP 98009 to 98609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:23,957 DEBUG Processing 153/319 atomic regions from SNP 45752 to 46353 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:23,966 DEBUG Processing 304/786 atomic regions from SNP 90931 to 91531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:24,011 DEBUG Processing 115/598 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:24,057 DEBUG Processing 244/946 atomic regions from SNP 73111 to 73711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:24,089 DEBUG Processing 328/784 atomic regions from SNP 98309 to 98909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:24,100 DEBUG Processing 209/1054 atomic regions from SNP 62487 to 63087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:24,159 DEBUG Processing 154/319 atomic regions from SNP 46053 to 46654 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:24,184 DEBUG Processing 305/786 atomic regions from SNP 91231 to 91831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:24,229 DEBUG Processing 116/598 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:24,302 DEBUG Processing 245/946 atomic regions from SNP 73411 to 74011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:24,315 DEBUG Processing 329/784 atomic regions from SNP 98609 to 99209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:24,360 DEBUG Processing 210/1054 atomic regions from SNP 62787 to 63387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:24,367 DEBUG Processing 155/319 atomic regions from SNP 46354 to 46955 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:24,404 DEBUG Processing 306/786 atomic regions from SNP 91531 to 92131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:24,450 DEBUG Processing 117/598 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:24,543 DEBUG Processing 330/784 atomic regions from SNP 98909 to 99509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:24,550 DEBUG Processing 246/946 atomic regions from SNP 73711 to 74311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:24,576 DEBUG Processing 156/319 atomic regions from SNP 46655 to 47256 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:24,618 DEBUG Processing 211/1054 atomic regions from SNP 63087 to 63687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:24,622 DEBUG Processing 307/786 atomic regions from SNP 91831 to 92431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:24,666 DEBUG Processing 118/598 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:24,766 DEBUG Processing 331/784 atomic regions from SNP 99209 to 99809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:24,774 DEBUG Processing 157/319 atomic regions from SNP 46956 to 47557 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:24,794 DEBUG Processing 247/946 atomic regions from SNP 74011 to 74611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:24,837 DEBUG Processing 308/786 atomic regions from SNP 92131 to 92731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:24,870 DEBUG Processing 212/1054 atomic regions from SNP 63387 to 63987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:24,884 DEBUG Processing 119/598 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:24,976 DEBUG Processing 158/319 atomic regions from SNP 47257 to 47858 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:24,989 DEBUG Processing 332/784 atomic regions from SNP 99509 to 100109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:25,037 DEBUG Processing 248/946 atomic regions from SNP 74311 to 74911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:25,052 DEBUG Processing 309/786 atomic regions from SNP 92431 to 93031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:25,102 DEBUG Processing 120/598 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:25,121 DEBUG Processing 213/1054 atomic regions from SNP 63687 to 64287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:25,177 DEBUG Processing 159/319 atomic regions from SNP 47558 to 48159 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:25,213 DEBUG Processing 333/784 atomic regions from SNP 99809 to 100409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:25,268 DEBUG Processing 310/786 atomic regions from SNP 92731 to 93331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:25,285 DEBUG Processing 249/946 atomic regions from SNP 74611 to 75211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:25,323 DEBUG Processing 121/598 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:25,373 DEBUG Processing 214/1054 atomic regions from SNP 63987 to 64587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:25,377 DEBUG Processing 160/319 atomic regions from SNP 47859 to 48460 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:25,435 DEBUG Processing 334/784 atomic regions from SNP 100109 to 100709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:25,480 DEBUG Processing 311/786 atomic regions from SNP 93031 to 93631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:25,529 DEBUG Processing 250/946 atomic regions from SNP 74911 to 75511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:25,541 DEBUG Processing 122/598 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:25,577 DEBUG Processing 161/319 atomic regions from SNP 48160 to 48761 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:25,622 DEBUG Processing 215/1054 atomic regions from SNP 64287 to 64887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:25,648 DEBUG Processing 335/784 atomic regions from SNP 100409 to 101009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:25,692 DEBUG Processing 312/786 atomic regions from SNP 93331 to 93931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:25,759 DEBUG Processing 123/598 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:25,770 DEBUG Processing 251/946 atomic regions from SNP 75211 to 75811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:25,779 DEBUG Processing 162/319 atomic regions from SNP 48461 to 49062 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:25,865 DEBUG Processing 336/784 atomic regions from SNP 100709 to 101309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:25,870 DEBUG Processing 216/1054 atomic regions from SNP 64587 to 65187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:25,905 DEBUG Processing 313/786 atomic regions from SNP 93631 to 94231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:25,977 DEBUG Processing 124/598 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:25,979 DEBUG Processing 163/319 atomic regions from SNP 48762 to 49363 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:26,012 DEBUG Processing 252/946 atomic regions from SNP 75511 to 76111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:26,080 DEBUG Processing 337/784 atomic regions from SNP 101009 to 101609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:26,117 DEBUG Processing 314/786 atomic regions from SNP 93931 to 94531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:26,118 DEBUG Processing 217/1054 atomic regions from SNP 64887 to 65487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:26,179 DEBUG Processing 164/319 atomic regions from SNP 49063 to 49664 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:26,195 DEBUG Processing 125/598 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:26,253 DEBUG Processing 253/946 atomic regions from SNP 75811 to 76411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:26,295 DEBUG Processing 338/784 atomic regions from SNP 101309 to 101909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:26,333 DEBUG Processing 315/786 atomic regions from SNP 94231 to 94831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:26,372 DEBUG Processing 218/1054 atomic regions from SNP 65187 to 65787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:26,385 DEBUG Processing 165/319 atomic regions from SNP 49364 to 49965 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:26,412 DEBUG Processing 126/598 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:26,492 DEBUG Processing 254/946 atomic regions from SNP 76111 to 76711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:26,510 DEBUG Processing 339/784 atomic regions from SNP 101609 to 102209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:26,559 DEBUG Processing 316/786 atomic regions from SNP 94531 to 95131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:26,587 DEBUG Processing 166/319 atomic regions from SNP 49665 to 50266 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:26,621 DEBUG Processing 127/598 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:26,623 DEBUG Processing 219/1054 atomic regions from SNP 65487 to 66087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:26,722 DEBUG Processing 340/784 atomic regions from SNP 101909 to 102509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:26,722 DEBUG Processing 255/946 atomic regions from SNP 76411 to 77011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:26,774 DEBUG Processing 317/786 atomic regions from SNP 94831 to 95431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:26,789 DEBUG Processing 167/319 atomic regions from SNP 49966 to 50567 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:26,832 DEBUG Processing 128/598 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:26,873 DEBUG Processing 220/1054 atomic regions from SNP 65787 to 66387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:26,934 DEBUG Processing 341/784 atomic regions from SNP 102209 to 102809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:26,953 DEBUG Processing 256/946 atomic regions from SNP 76711 to 77311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:26,988 DEBUG Processing 318/786 atomic regions from SNP 95131 to 95731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:26,992 DEBUG Processing 168/319 atomic regions from SNP 50267 to 50868 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:27,041 DEBUG Processing 129/598 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:27,120 DEBUG Processing 221/1054 atomic regions from SNP 66087 to 66687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:27,149 DEBUG Processing 342/784 atomic regions from SNP 102509 to 103109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:27,191 DEBUG Processing 257/946 atomic regions from SNP 77011 to 77611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:27,194 DEBUG Processing 169/319 atomic regions from SNP 50568 to 51169 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:27,205 DEBUG Processing 319/786 atomic regions from SNP 95431 to 96031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:27,253 DEBUG Processing 130/598 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:27,362 DEBUG Processing 343/784 atomic regions from SNP 102809 to 103409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:27,370 DEBUG Processing 222/1054 atomic regions from SNP 66387 to 66987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:27,399 DEBUG Processing 170/319 atomic regions from SNP 50869 to 51470 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:27,425 DEBUG Processing 320/786 atomic regions from SNP 95731 to 96331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:27,429 DEBUG Processing 258/946 atomic regions from SNP 77311 to 77911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:27,468 DEBUG Processing 131/598 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:27,578 DEBUG Processing 344/784 atomic regions from SNP 103109 to 103709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:27,607 DEBUG Processing 171/319 atomic regions from SNP 51170 to 51771 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:27,627 DEBUG Processing 223/1054 atomic regions from SNP 66687 to 67287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:27,648 DEBUG Processing 321/786 atomic regions from SNP 96031 to 96631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:27,670 DEBUG Processing 259/946 atomic regions from SNP 77611 to 78211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:27,685 DEBUG Processing 132/598 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:27,793 DEBUG Processing 345/784 atomic regions from SNP 103409 to 104009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:27,812 DEBUG Processing 172/319 atomic regions from SNP 51471 to 52072 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:27,875 DEBUG Processing 322/786 atomic regions from SNP 96331 to 96931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:27,887 DEBUG Processing 224/1054 atomic regions from SNP 66987 to 67587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:27,905 DEBUG Processing 133/598 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:27,914 DEBUG Processing 260/946 atomic regions from SNP 77911 to 78511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:28,007 DEBUG Processing 346/784 atomic regions from SNP 103709 to 104309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:28,013 DEBUG Processing 173/319 atomic regions from SNP 51772 to 52373 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:28,097 DEBUG Processing 323/786 atomic regions from SNP 96631 to 97231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:28,125 DEBUG Processing 134/598 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:28,145 DEBUG Processing 225/1054 atomic regions from SNP 67287 to 67887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:28,156 DEBUG Processing 261/946 atomic regions from SNP 78211 to 78811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:28,209 DEBUG Processing 174/319 atomic regions from SNP 52073 to 52674 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:28,222 DEBUG Processing 347/784 atomic regions from SNP 104009 to 104609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:28,323 DEBUG Processing 324/786 atomic regions from SNP 96931 to 97531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:28,347 DEBUG Processing 135/598 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:28,406 DEBUG Processing 262/946 atomic regions from SNP 78511 to 79111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:28,415 DEBUG Processing 226/1054 atomic regions from SNP 67587 to 68187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:28,423 DEBUG Processing 175/319 atomic regions from SNP 52374 to 52975 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:28,445 DEBUG Processing 348/784 atomic regions from SNP 104309 to 104909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:28,543 DEBUG Processing 325/786 atomic regions from SNP 97231 to 97831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:28,567 DEBUG Processing 136/598 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:28,628 DEBUG Processing 176/319 atomic regions from SNP 52675 to 53276 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:28,648 DEBUG Processing 263/946 atomic regions from SNP 78811 to 79411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:28,665 DEBUG Processing 349/784 atomic regions from SNP 104609 to 105209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:28,670 DEBUG Processing 227/1054 atomic regions from SNP 67887 to 68487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:28,760 DEBUG Processing 326/786 atomic regions from SNP 97531 to 98131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:28,782 DEBUG Processing 137/598 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:28,831 DEBUG Processing 177/319 atomic regions from SNP 52976 to 53577 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:28,884 DEBUG Processing 350/784 atomic regions from SNP 104909 to 105509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:28,888 DEBUG Processing 264/946 atomic regions from SNP 79111 to 79711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:28,919 DEBUG Processing 228/1054 atomic regions from SNP 68187 to 68787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:28,972 DEBUG Processing 327/786 atomic regions from SNP 97831 to 98431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:28,996 DEBUG Processing 138/598 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:29,029 DEBUG Processing 178/319 atomic regions from SNP 53277 to 53878 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:29,100 DEBUG Processing 351/784 atomic regions from SNP 105209 to 105809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:29,124 DEBUG Processing 265/946 atomic regions from SNP 79411 to 80011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:29,166 DEBUG Processing 229/1054 atomic regions from SNP 68487 to 69087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:29,187 DEBUG Processing 328/786 atomic regions from SNP 98131 to 98731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:29,213 DEBUG Processing 139/598 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:29,229 DEBUG Processing 179/319 atomic regions from SNP 53578 to 54179 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:29,321 DEBUG Processing 352/784 atomic regions from SNP 105509 to 106109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:29,366 DEBUG Processing 266/946 atomic regions from SNP 79711 to 80311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:29,408 DEBUG Processing 329/786 atomic regions from SNP 98431 to 99031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:29,421 DEBUG Processing 230/1054 atomic regions from SNP 68787 to 69387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:29,433 DEBUG Processing 180/319 atomic regions from SNP 53879 to 54480 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:29,436 DEBUG Processing 140/598 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:29,542 DEBUG Processing 353/784 atomic regions from SNP 105809 to 106409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:29,610 DEBUG Processing 267/946 atomic regions from SNP 80011 to 80611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:29,629 DEBUG Processing 330/786 atomic regions from SNP 98731 to 99331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:29,638 DEBUG Processing 181/319 atomic regions from SNP 54180 to 54781 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:29,655 DEBUG Processing 141/598 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:29,679 DEBUG Processing 231/1054 atomic regions from SNP 69087 to 69687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:29,755 DEBUG Processing 354/784 atomic regions from SNP 106109 to 106709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:29,848 DEBUG Processing 182/319 atomic regions from SNP 54481 to 55082 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:29,852 DEBUG Processing 268/946 atomic regions from SNP 80311 to 80911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:29,855 DEBUG Processing 331/786 atomic regions from SNP 99031 to 99631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:29,876 DEBUG Processing 142/598 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:29,935 DEBUG Processing 232/1054 atomic regions from SNP 69387 to 69987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:29,969 DEBUG Processing 355/784 atomic regions from SNP 106409 to 107009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:30,050 DEBUG Processing 183/319 atomic regions from SNP 54782 to 55383 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:30,069 DEBUG Processing 332/786 atomic regions from SNP 99331 to 99931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:30,092 DEBUG Processing 269/946 atomic regions from SNP 80611 to 81211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:30,094 DEBUG Processing 143/598 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:30,179 DEBUG Processing 233/1054 atomic regions from SNP 69687 to 70287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:30,182 DEBUG Processing 356/784 atomic regions from SNP 106709 to 107309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:30,252 DEBUG Processing 184/319 atomic regions from SNP 55083 to 55684 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:30,286 DEBUG Processing 333/786 atomic regions from SNP 99631 to 100231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:30,314 DEBUG Processing 144/598 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:30,338 DEBUG Processing 270/946 atomic regions from SNP 80911 to 81511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:30,397 DEBUG Processing 357/784 atomic regions from SNP 107009 to 107609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:30,429 DEBUG Processing 234/1054 atomic regions from SNP 69987 to 70587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:30,454 DEBUG Processing 185/319 atomic regions from SNP 55384 to 55985 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:30,502 DEBUG Processing 334/786 atomic regions from SNP 99931 to 100531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:30,535 DEBUG Processing 145/598 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:30,583 DEBUG Processing 271/946 atomic regions from SNP 81211 to 81811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:30,615 DEBUG Processing 358/784 atomic regions from SNP 107309 to 107909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:30,666 DEBUG Processing 186/319 atomic regions from SNP 55685 to 56286 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:30,679 DEBUG Processing 235/1054 atomic regions from SNP 70287 to 70887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:30,717 DEBUG Processing 335/786 atomic regions from SNP 100231 to 100831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:30,749 DEBUG Processing 146/598 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:30,818 DEBUG Processing 272/946 atomic regions from SNP 81511 to 82111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:30,826 DEBUG Processing 359/784 atomic regions from SNP 107609 to 108209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:30,867 DEBUG Processing 187/319 atomic regions from SNP 55986 to 56587 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:30,931 DEBUG Processing 236/1054 atomic regions from SNP 70587 to 71187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:30,931 DEBUG Processing 336/786 atomic regions from SNP 100531 to 101131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:30,963 DEBUG Processing 147/598 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:31,045 DEBUG Processing 360/784 atomic regions from SNP 107909 to 108509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:31,060 DEBUG Processing 273/946 atomic regions from SNP 81811 to 82411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:31,066 DEBUG Processing 188/319 atomic regions from SNP 56287 to 56888 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:31,148 DEBUG Processing 337/786 atomic regions from SNP 100831 to 101431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:31,177 DEBUG Processing 148/598 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:31,184 DEBUG Processing 237/1054 atomic regions from SNP 70887 to 71487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:31,264 DEBUG Processing 361/784 atomic regions from SNP 108209 to 108809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:31,268 DEBUG Processing 189/319 atomic regions from SNP 56588 to 57189 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:31,298 DEBUG Processing 274/946 atomic regions from SNP 82111 to 82711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:31,365 DEBUG Processing 338/786 atomic regions from SNP 101131 to 101731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:31,416 DEBUG Processing 149/598 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:31,436 DEBUG Processing 238/1054 atomic regions from SNP 71187 to 71787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:31,467 DEBUG Processing 190/319 atomic regions from SNP 56889 to 57490 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:31,488 DEBUG Processing 362/784 atomic regions from SNP 108509 to 109109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:31,539 DEBUG Processing 275/946 atomic regions from SNP 82411 to 83011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:31,583 DEBUG Processing 339/786 atomic regions from SNP 101431 to 102031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:31,632 DEBUG Processing 150/598 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:31,667 DEBUG Processing 191/319 atomic regions from SNP 57190 to 57791 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:31,690 DEBUG Processing 239/1054 atomic regions from SNP 71487 to 72087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:31,706 DEBUG Processing 363/784 atomic regions from SNP 108809 to 109409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:31,776 DEBUG Processing 276/946 atomic regions from SNP 82711 to 83311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:31,799 DEBUG Processing 340/786 atomic regions from SNP 101731 to 102331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:31,846 DEBUG Processing 151/598 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:31,870 DEBUG Processing 192/319 atomic regions from SNP 57491 to 58092 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:31,922 DEBUG Processing 364/784 atomic regions from SNP 109109 to 109709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:31,940 DEBUG Processing 240/1054 atomic regions from SNP 71787 to 72387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:32,013 DEBUG Processing 277/946 atomic regions from SNP 83011 to 83611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:32,014 DEBUG Processing 341/786 atomic regions from SNP 102031 to 102631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:32,062 DEBUG Processing 152/598 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:32,072 DEBUG Processing 193/319 atomic regions from SNP 57792 to 58393 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:32,137 DEBUG Processing 365/784 atomic regions from SNP 109409 to 110009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:32,190 DEBUG Processing 241/1054 atomic regions from SNP 72087 to 72687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:32,232 DEBUG Processing 342/786 atomic regions from SNP 102331 to 102931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:32,250 DEBUG Processing 278/946 atomic regions from SNP 83311 to 83911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:32,277 DEBUG Processing 194/319 atomic regions from SNP 58093 to 58694 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:32,278 DEBUG Processing 153/598 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:32,352 DEBUG Processing 366/784 atomic regions from SNP 109709 to 110309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:32,442 DEBUG Processing 242/1054 atomic regions from SNP 72387 to 72987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:32,454 DEBUG Processing 343/786 atomic regions from SNP 102631 to 103231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:32,484 DEBUG Processing 195/319 atomic regions from SNP 58394 to 58995 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:32,486 DEBUG Processing 279/946 atomic regions from SNP 83611 to 84211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:32,492 DEBUG Processing 154/598 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:32,564 DEBUG Processing 367/784 atomic regions from SNP 110009 to 110609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:32,671 DEBUG Processing 344/786 atomic regions from SNP 102931 to 103531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:32,689 DEBUG Processing 196/319 atomic regions from SNP 58695 to 59296 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:32,694 DEBUG Processing 243/1054 atomic regions from SNP 72687 to 73287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:32,707 DEBUG Processing 155/598 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:32,725 DEBUG Processing 280/946 atomic regions from SNP 83911 to 84511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:32,778 DEBUG Processing 368/784 atomic regions from SNP 110309 to 110909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:32,893 DEBUG Processing 345/786 atomic regions from SNP 103231 to 103831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:32,896 DEBUG Processing 197/319 atomic regions from SNP 58996 to 59597 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:32,922 DEBUG Processing 156/598 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:32,954 DEBUG Processing 244/1054 atomic regions from SNP 72987 to 73587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:32,967 DEBUG Processing 281/946 atomic regions from SNP 84211 to 84811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:32,991 DEBUG Processing 369/784 atomic regions from SNP 110609 to 111209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:33,101 DEBUG Processing 198/319 atomic regions from SNP 59297 to 59898 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:33,114 DEBUG Processing 346/786 atomic regions from SNP 103531 to 104131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:33,140 DEBUG Processing 157/598 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:33,210 DEBUG Processing 245/1054 atomic regions from SNP 73287 to 73887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:33,212 DEBUG Processing 282/946 atomic regions from SNP 84511 to 85111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:33,213 DEBUG Processing 370/784 atomic regions from SNP 110909 to 111509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:33,306 DEBUG Processing 199/319 atomic regions from SNP 59598 to 60199 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:33,336 DEBUG Processing 347/786 atomic regions from SNP 103831 to 104431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:33,355 DEBUG Processing 158/598 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:33,434 DEBUG Processing 371/784 atomic regions from SNP 111209 to 111809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:33,454 DEBUG Processing 283/946 atomic regions from SNP 84811 to 85411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:33,464 DEBUG Processing 246/1054 atomic regions from SNP 73587 to 74187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:33,512 DEBUG Processing 200/319 atomic regions from SNP 59899 to 60500 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:33,558 DEBUG Processing 348/786 atomic regions from SNP 104131 to 104731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:33,570 DEBUG Processing 159/598 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:33,653 DEBUG Processing 372/784 atomic regions from SNP 111509 to 112109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:33,694 DEBUG Processing 284/946 atomic regions from SNP 85111 to 85711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:33,712 DEBUG Processing 201/319 atomic regions from SNP 60200 to 60801 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:33,717 DEBUG Processing 247/1054 atomic regions from SNP 73887 to 74487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:33,772 DEBUG Processing 349/786 atomic regions from SNP 104431 to 105031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:33,784 DEBUG Processing 160/598 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:33,872 DEBUG Processing 373/784 atomic regions from SNP 111809 to 112409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:33,914 DEBUG Processing 202/319 atomic regions from SNP 60501 to 61102 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:33,931 DEBUG Processing 285/946 atomic regions from SNP 85411 to 86011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:33,970 DEBUG Processing 248/1054 atomic regions from SNP 74187 to 74787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:33,988 DEBUG Processing 350/786 atomic regions from SNP 104731 to 105331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:33,996 DEBUG Processing 161/598 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:34,085 DEBUG Processing 374/784 atomic regions from SNP 112109 to 112709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:34,112 DEBUG Processing 203/319 atomic regions from SNP 60802 to 61403 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:34,163 DEBUG Processing 286/946 atomic regions from SNP 85711 to 86311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:34,204 DEBUG Processing 351/786 atomic regions from SNP 105031 to 105631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:34,208 DEBUG Processing 162/598 atomic regions from SNP 48461 to 49062 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:34,223 DEBUG Processing 249/1054 atomic regions from SNP 74487 to 75087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:34,301 DEBUG Processing 375/784 atomic regions from SNP 112409 to 113009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:34,311 DEBUG Processing 204/319 atomic regions from SNP 61103 to 61704 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:34,402 DEBUG Processing 287/946 atomic regions from SNP 86011 to 86611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:34,424 DEBUG Processing 163/598 atomic regions from SNP 48762 to 49363 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:34,424 DEBUG Processing 352/786 atomic regions from SNP 105331 to 105931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:34,480 DEBUG Processing 250/1054 atomic regions from SNP 74787 to 75387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:34,511 DEBUG Processing 205/319 atomic regions from SNP 61404 to 62005 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:34,517 DEBUG Processing 376/784 atomic regions from SNP 112709 to 113309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:34,640 DEBUG Processing 353/786 atomic regions from SNP 105631 to 106231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:34,642 DEBUG Processing 288/946 atomic regions from SNP 86311 to 86911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:34,643 DEBUG Processing 164/598 atomic regions from SNP 49063 to 49664 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:34,711 DEBUG Processing 206/319 atomic regions from SNP 61705 to 62306 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:34,734 DEBUG Processing 251/1054 atomic regions from SNP 75087 to 75687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:34,735 DEBUG Processing 377/784 atomic regions from SNP 113009 to 113609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:34,857 DEBUG Processing 354/786 atomic regions from SNP 105931 to 106531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:34,860 DEBUG Processing 165/598 atomic regions from SNP 49364 to 49965 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:34,884 DEBUG Processing 289/946 atomic regions from SNP 86611 to 87211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:34,913 DEBUG Processing 207/319 atomic regions from SNP 62006 to 62607 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:34,955 DEBUG Processing 378/784 atomic regions from SNP 113309 to 113909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:35,001 DEBUG Processing 252/1054 atomic regions from SNP 75387 to 75987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:35,076 DEBUG Processing 166/598 atomic regions from SNP 49665 to 50266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:35,076 DEBUG Processing 355/786 atomic regions from SNP 106231 to 106831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:35,117 DEBUG Processing 208/319 atomic regions from SNP 62307 to 62908 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:35,128 DEBUG Processing 290/946 atomic regions from SNP 86911 to 87511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:35,171 DEBUG Processing 379/784 atomic regions from SNP 113609 to 114209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:35,254 DEBUG Processing 253/1054 atomic regions from SNP 75687 to 76287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:35,292 DEBUG Processing 167/598 atomic regions from SNP 49966 to 50567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:35,298 DEBUG Processing 356/786 atomic regions from SNP 106531 to 107131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:35,326 DEBUG Processing 209/319 atomic regions from SNP 62608 to 63209 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:35,372 DEBUG Processing 291/946 atomic regions from SNP 87211 to 87811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:35,392 DEBUG Processing 380/784 atomic regions from SNP 113909 to 114509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:35,510 DEBUG Processing 254/1054 atomic regions from SNP 75987 to 76587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:35,511 DEBUG Processing 168/598 atomic regions from SNP 50267 to 50868 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:35,521 DEBUG Processing 357/786 atomic regions from SNP 106831 to 107431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:35,535 DEBUG Processing 210/319 atomic regions from SNP 62909 to 63510 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:35,613 DEBUG Processing 381/784 atomic regions from SNP 114209 to 114809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:35,617 DEBUG Processing 292/946 atomic regions from SNP 87511 to 88111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:35,726 DEBUG Processing 169/598 atomic regions from SNP 50568 to 51169 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:35,745 DEBUG Processing 211/319 atomic regions from SNP 63210 to 63811 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:35,746 DEBUG Processing 358/786 atomic regions from SNP 107131 to 107731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:35,772 DEBUG Processing 255/1054 atomic regions from SNP 76287 to 76887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:35,831 DEBUG Processing 382/784 atomic regions from SNP 114509 to 115109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:35,856 DEBUG Processing 293/946 atomic regions from SNP 87811 to 88411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:35,937 DEBUG Processing 170/598 atomic regions from SNP 50869 to 51470 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:35,948 DEBUG Processing 212/319 atomic regions from SNP 63511 to 64112 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:35,962 DEBUG Processing 359/786 atomic regions from SNP 107431 to 108031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:36,027 DEBUG Processing 256/1054 atomic regions from SNP 76587 to 77187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:36,048 DEBUG Processing 383/784 atomic regions from SNP 114809 to 115409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:36,091 DEBUG Processing 294/946 atomic regions from SNP 88111 to 88711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:36,145 DEBUG Processing 171/598 atomic regions from SNP 51170 to 51771 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:36,150 DEBUG Processing 213/319 atomic regions from SNP 63812 to 64413 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:36,181 DEBUG Processing 360/786 atomic regions from SNP 107731 to 108331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:36,268 DEBUG Processing 384/784 atomic regions from SNP 115109 to 115709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:36,281 DEBUG Processing 257/1054 atomic regions from SNP 76887 to 77487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:36,331 DEBUG Processing 295/946 atomic regions from SNP 88411 to 89011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:36,353 DEBUG Processing 214/319 atomic regions from SNP 64113 to 64714 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:36,359 DEBUG Processing 172/598 atomic regions from SNP 51471 to 52072 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:36,398 DEBUG Processing 361/786 atomic regions from SNP 108031 to 108631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:36,482 DEBUG Processing 385/784 atomic regions from SNP 115409 to 116009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:36,534 DEBUG Processing 258/1054 atomic regions from SNP 77187 to 77787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:36,558 DEBUG Processing 215/319 atomic regions from SNP 64414 to 65015 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:36,565 DEBUG Processing 296/946 atomic regions from SNP 88711 to 89311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:36,568 DEBUG Processing 173/598 atomic regions from SNP 51772 to 52373 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:36,612 DEBUG Processing 362/786 atomic regions from SNP 108331 to 108931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:36,694 DEBUG Processing 386/784 atomic regions from SNP 115709 to 116309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:36,762 DEBUG Processing 216/319 atomic regions from SNP 64715 to 65316 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:36,780 DEBUG Processing 174/598 atomic regions from SNP 52073 to 52674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:36,785 DEBUG Processing 259/1054 atomic regions from SNP 77487 to 78087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:36,799 DEBUG Processing 297/946 atomic regions from SNP 89011 to 89611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:36,826 DEBUG Processing 363/786 atomic regions from SNP 108631 to 109231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:36,902 DEBUG Processing 387/784 atomic regions from SNP 116009 to 116609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:36,960 DEBUG Processing 217/319 atomic regions from SNP 65016 to 65617 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:36,989 DEBUG Processing 175/598 atomic regions from SNP 52374 to 52974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:37,030 DEBUG Processing 298/946 atomic regions from SNP 89311 to 89911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:37,037 DEBUG Processing 260/1054 atomic regions from SNP 77787 to 78387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:37,038 DEBUG Processing 364/786 atomic regions from SNP 108931 to 109531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:37,113 DEBUG Processing 388/784 atomic regions from SNP 116309 to 116909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:37,160 DEBUG Processing 218/319 atomic regions from SNP 65317 to 65918 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:37,202 DEBUG Processing 176/598 atomic regions from SNP 52674 to 53274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:37,256 DEBUG Processing 365/786 atomic regions from SNP 109231 to 109831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:37,269 DEBUG Processing 299/946 atomic regions from SNP 89611 to 90211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:37,292 DEBUG Processing 261/1054 atomic regions from SNP 78087 to 78687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:37,327 DEBUG Processing 389/784 atomic regions from SNP 116609 to 117209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:37,361 DEBUG Processing 219/319 atomic regions from SNP 65618 to 66219 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:37,417 DEBUG Processing 177/598 atomic regions from SNP 52974 to 53574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:37,480 DEBUG Processing 366/786 atomic regions from SNP 109531 to 110131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:37,515 DEBUG Processing 300/946 atomic regions from SNP 89911 to 90511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:37,548 DEBUG Processing 390/784 atomic regions from SNP 116909 to 117509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:37,558 DEBUG Processing 262/1054 atomic regions from SNP 78387 to 78987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:37,573 DEBUG Processing 220/319 atomic regions from SNP 65919 to 66520 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:37,626 DEBUG Processing 178/598 atomic regions from SNP 53274 to 53874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:37,696 DEBUG Processing 367/786 atomic regions from SNP 109831 to 110431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:37,753 DEBUG Processing 301/946 atomic regions from SNP 90211 to 90811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:37,766 DEBUG Processing 391/784 atomic regions from SNP 117209 to 117809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:37,775 DEBUG Processing 221/319 atomic regions from SNP 66220 to 66821 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:37,813 DEBUG Processing 263/1054 atomic regions from SNP 78687 to 79287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:37,837 DEBUG Processing 179/598 atomic regions from SNP 53574 to 54174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:37,910 DEBUG Processing 368/786 atomic regions from SNP 110131 to 110731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:37,976 DEBUG Processing 222/319 atomic regions from SNP 66521 to 67122 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:37,980 DEBUG Processing 392/784 atomic regions from SNP 117509 to 118109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:37,986 DEBUG Processing 302/946 atomic regions from SNP 90511 to 91111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:38,044 DEBUG Processing 180/598 atomic regions from SNP 53874 to 54474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:38,064 DEBUG Processing 264/1054 atomic regions from SNP 78987 to 79587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:38,125 DEBUG Processing 369/786 atomic regions from SNP 110431 to 111031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:38,187 DEBUG Processing 223/319 atomic regions from SNP 66822 to 67423 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:38,195 DEBUG Processing 393/784 atomic regions from SNP 117809 to 118409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:38,221 DEBUG Processing 303/946 atomic regions from SNP 90811 to 91411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:38,257 DEBUG Processing 181/598 atomic regions from SNP 54174 to 54774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:38,312 DEBUG Processing 265/1054 atomic regions from SNP 79287 to 79887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:38,337 DEBUG Processing 370/786 atomic regions from SNP 110731 to 111331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:38,386 DEBUG Processing 224/319 atomic regions from SNP 67123 to 67724 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:38,409 DEBUG Processing 394/784 atomic regions from SNP 118109 to 118709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:38,456 DEBUG Processing 304/946 atomic regions from SNP 91111 to 91711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:38,466 DEBUG Processing 182/598 atomic regions from SNP 54474 to 55074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:38,547 DEBUG Processing 371/786 atomic regions from SNP 111031 to 111631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:38,559 DEBUG Processing 266/1054 atomic regions from SNP 79587 to 80187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:38,581 DEBUG Processing 225/319 atomic regions from SNP 67424 to 68025 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:38,621 DEBUG Processing 395/784 atomic regions from SNP 118409 to 119009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:38,675 DEBUG Processing 183/598 atomic regions from SNP 54774 to 55374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:38,688 DEBUG Processing 305/946 atomic regions from SNP 91411 to 92011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:38,759 DEBUG Processing 372/786 atomic regions from SNP 111331 to 111931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:38,779 DEBUG Processing 226/319 atomic regions from SNP 67725 to 68326 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:38,808 DEBUG Processing 267/1054 atomic regions from SNP 79887 to 80487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:38,832 DEBUG Processing 396/784 atomic regions from SNP 118709 to 119309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:38,882 DEBUG Processing 184/598 atomic regions from SNP 55074 to 55674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:38,920 DEBUG Processing 306/946 atomic regions from SNP 91711 to 92311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:38,970 DEBUG Processing 373/786 atomic regions from SNP 111631 to 112231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:38,977 DEBUG Processing 227/319 atomic regions from SNP 68026 to 68627 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:39,044 DEBUG Processing 397/784 atomic regions from SNP 119009 to 119609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:39,055 DEBUG Processing 268/1054 atomic regions from SNP 80187 to 80787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:39,094 DEBUG Processing 185/598 atomic regions from SNP 55374 to 55974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:39,153 DEBUG Processing 307/946 atomic regions from SNP 92011 to 92611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:39,178 DEBUG Processing 228/319 atomic regions from SNP 68327 to 68928 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:39,186 DEBUG Processing 374/786 atomic regions from SNP 111931 to 112531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:39,256 DEBUG Processing 398/784 atomic regions from SNP 119309 to 119909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:39,302 DEBUG Processing 186/598 atomic regions from SNP 55674 to 56274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:39,322 DEBUG Processing 269/1054 atomic regions from SNP 80487 to 81087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:39,381 DEBUG Processing 229/319 atomic regions from SNP 68628 to 69229 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:39,387 DEBUG Processing 308/946 atomic regions from SNP 92311 to 92911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:39,404 DEBUG Processing 375/786 atomic regions from SNP 112231 to 112831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:39,471 DEBUG Processing 399/784 atomic regions from SNP 119609 to 120209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:39,514 DEBUG Processing 187/598 atomic regions from SNP 55974 to 56574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:39,574 DEBUG Processing 270/1054 atomic regions from SNP 80787 to 81387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:39,585 DEBUG Processing 230/319 atomic regions from SNP 68929 to 69530 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:39,620 DEBUG Processing 376/786 atomic regions from SNP 112531 to 113131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:39,623 DEBUG Processing 309/946 atomic regions from SNP 92611 to 93211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:39,685 DEBUG Processing 400/784 atomic regions from SNP 119909 to 120509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:39,725 DEBUG Processing 188/598 atomic regions from SNP 56274 to 56874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:39,787 DEBUG Processing 231/319 atomic regions from SNP 69230 to 69831 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:39,828 DEBUG Processing 271/1054 atomic regions from SNP 81087 to 81687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:39,837 DEBUG Processing 377/786 atomic regions from SNP 112831 to 113431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:39,859 DEBUG Processing 310/946 atomic regions from SNP 92911 to 93511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:39,901 DEBUG Processing 401/784 atomic regions from SNP 120209 to 120809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:39,938 DEBUG Processing 189/598 atomic regions from SNP 56574 to 57174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:39,988 DEBUG Processing 232/319 atomic regions from SNP 69531 to 70132 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:40,052 DEBUG Processing 378/786 atomic regions from SNP 113131 to 113731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:40,083 DEBUG Processing 272/1054 atomic regions from SNP 81387 to 81987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:40,101 DEBUG Processing 311/946 atomic regions from SNP 93211 to 93811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:40,121 DEBUG Processing 402/784 atomic regions from SNP 120509 to 121109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:40,155 DEBUG Processing 190/598 atomic regions from SNP 56874 to 57474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:40,188 DEBUG Processing 233/319 atomic regions from SNP 69832 to 70433 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:40,270 DEBUG Processing 379/786 atomic regions from SNP 113431 to 114031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:40,336 DEBUG Processing 273/1054 atomic regions from SNP 81687 to 82287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:40,341 DEBUG Processing 403/784 atomic regions from SNP 120809 to 121409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:40,343 DEBUG Processing 312/946 atomic regions from SNP 93511 to 94111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:40,372 DEBUG Processing 191/598 atomic regions from SNP 57174 to 57774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:40,385 DEBUG Processing 234/319 atomic regions from SNP 70133 to 70734 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:40,480 DEBUG Processing 380/786 atomic regions from SNP 113731 to 114331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:40,562 DEBUG Processing 404/784 atomic regions from SNP 121109 to 121709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:40,583 DEBUG Processing 274/1054 atomic regions from SNP 81987 to 82587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:40,584 DEBUG Processing 313/946 atomic regions from SNP 93811 to 94411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:40,588 DEBUG Processing 192/598 atomic regions from SNP 57474 to 58074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:40,592 DEBUG Processing 235/319 atomic regions from SNP 70434 to 71035 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:40,687 DEBUG Processing 381/786 atomic regions from SNP 114031 to 114631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:40,781 DEBUG Processing 405/784 atomic regions from SNP 121409 to 122009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:40,789 DEBUG Processing 236/319 atomic regions from SNP 70735 to 71336 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:40,805 DEBUG Processing 193/598 atomic regions from SNP 57774 to 58374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:40,825 DEBUG Processing 314/946 atomic regions from SNP 94111 to 94711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:40,831 DEBUG Processing 275/1054 atomic regions from SNP 82287 to 82887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:40,892 DEBUG Processing 382/786 atomic regions from SNP 114331 to 114931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:40,985 DEBUG Processing 237/319 atomic regions from SNP 71036 to 71637 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:40,998 DEBUG Processing 406/784 atomic regions from SNP 121709 to 122309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:41,024 DEBUG Processing 194/598 atomic regions from SNP 58074 to 58674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:41,063 DEBUG Processing 315/946 atomic regions from SNP 94411 to 95011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:41,078 DEBUG Processing 276/1054 atomic regions from SNP 82587 to 83187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:41,100 DEBUG Processing 383/786 atomic regions from SNP 114631 to 115231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:41,178 DEBUG Processing 238/319 atomic regions from SNP 71337 to 71938 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:41,215 DEBUG Processing 407/784 atomic regions from SNP 122009 to 122609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:41,243 DEBUG Processing 195/598 atomic regions from SNP 58374 to 58974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:41,302 DEBUG Processing 316/946 atomic regions from SNP 94711 to 95311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:41,310 DEBUG Processing 384/786 atomic regions from SNP 114931 to 115531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:41,324 DEBUG Processing 277/1054 atomic regions from SNP 82887 to 83487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:41,371 DEBUG Processing 239/319 atomic regions from SNP 71638 to 72239 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:41,432 DEBUG Processing 408/784 atomic regions from SNP 122309 to 122909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:41,461 DEBUG Processing 196/598 atomic regions from SNP 58674 to 59274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:41,522 DEBUG Processing 385/786 atomic regions from SNP 115231 to 115831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:41,541 DEBUG Processing 317/946 atomic regions from SNP 95011 to 95611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:41,565 DEBUG Processing 240/319 atomic regions from SNP 71939 to 72540 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:41,570 DEBUG Processing 278/1054 atomic regions from SNP 83187 to 83787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:41,648 DEBUG Processing 409/784 atomic regions from SNP 122609 to 123209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:41,676 DEBUG Processing 197/598 atomic regions from SNP 58974 to 59574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:41,736 DEBUG Processing 386/786 atomic regions from SNP 115531 to 116131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:41,763 DEBUG Processing 241/319 atomic regions from SNP 72240 to 72841 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:41,776 DEBUG Processing 318/946 atomic regions from SNP 95311 to 95911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:41,817 DEBUG Processing 279/1054 atomic regions from SNP 83487 to 84087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:41,864 DEBUG Processing 410/784 atomic regions from SNP 122909 to 123509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:41,889 DEBUG Processing 198/598 atomic regions from SNP 59274 to 59874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:41,945 DEBUG Processing 387/786 atomic regions from SNP 115831 to 116431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:41,961 DEBUG Processing 242/319 atomic regions from SNP 72541 to 73142 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:42,014 DEBUG Processing 319/946 atomic regions from SNP 95611 to 96211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:42,060 DEBUG Processing 280/1054 atomic regions from SNP 83787 to 84387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:42,081 DEBUG Processing 411/784 atomic regions from SNP 123209 to 123809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:42,105 DEBUG Processing 199/598 atomic regions from SNP 59574 to 60174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:42,155 DEBUG Processing 388/786 atomic regions from SNP 116131 to 116731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:42,156 DEBUG Processing 243/319 atomic regions from SNP 72842 to 73443 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:42,250 DEBUG Processing 320/946 atomic regions from SNP 95911 to 96511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:42,298 DEBUG Processing 412/784 atomic regions from SNP 123509 to 124109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:42,303 DEBUG Processing 281/1054 atomic regions from SNP 84087 to 84687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:42,321 DEBUG Processing 200/598 atomic regions from SNP 59874 to 60474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:42,354 DEBUG Processing 244/319 atomic regions from SNP 73143 to 73744 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:42,365 DEBUG Processing 389/786 atomic regions from SNP 116431 to 117031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:42,490 DEBUG Processing 321/946 atomic regions from SNP 96211 to 96811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:42,518 DEBUG Processing 413/784 atomic regions from SNP 123809 to 124409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:42,538 DEBUG Processing 201/598 atomic regions from SNP 60174 to 60774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:42,550 DEBUG Processing 282/1054 atomic regions from SNP 84387 to 84987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:42,553 DEBUG Processing 245/319 atomic regions from SNP 73444 to 74045 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:42,577 DEBUG Processing 390/786 atomic regions from SNP 116731 to 117331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:42,731 DEBUG Processing 322/946 atomic regions from SNP 96511 to 97111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:42,739 DEBUG Processing 414/784 atomic regions from SNP 124109 to 124709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:42,753 DEBUG Processing 246/319 atomic regions from SNP 73745 to 74346 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:42,756 DEBUG Processing 202/598 atomic regions from SNP 60474 to 61074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:42,795 DEBUG Processing 391/786 atomic regions from SNP 117031 to 117631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:42,800 DEBUG Processing 283/1054 atomic regions from SNP 84687 to 85287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:42,950 DEBUG Processing 247/319 atomic regions from SNP 74046 to 74647 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:42,951 DEBUG Processing 415/784 atomic regions from SNP 124409 to 125009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:42,965 DEBUG Processing 323/946 atomic regions from SNP 96811 to 97411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:42,967 DEBUG Processing 203/598 atomic regions from SNP 60774 to 61374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:43,007 DEBUG Processing 392/786 atomic regions from SNP 117331 to 117931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:43,044 DEBUG Processing 284/1054 atomic regions from SNP 84987 to 85587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:43,144 DEBUG Processing 248/319 atomic regions from SNP 74347 to 74948 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:43,163 DEBUG Processing 416/784 atomic regions from SNP 124709 to 125309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:43,177 DEBUG Processing 204/598 atomic regions from SNP 61074 to 61674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:43,200 DEBUG Processing 324/946 atomic regions from SNP 97111 to 97711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:43,217 DEBUG Processing 393/786 atomic regions from SNP 117631 to 118231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:43,287 DEBUG Processing 285/1054 atomic regions from SNP 85287 to 85887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:43,337 DEBUG Processing 249/319 atomic regions from SNP 74648 to 75249 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:43,376 DEBUG Processing 417/784 atomic regions from SNP 125009 to 125609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:43,387 DEBUG Processing 205/598 atomic regions from SNP 61374 to 61974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:43,429 DEBUG Processing 394/786 atomic regions from SNP 117931 to 118531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:43,432 DEBUG Processing 325/946 atomic regions from SNP 97411 to 98011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:43,532 DEBUG Processing 286/1054 atomic regions from SNP 85587 to 86187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:43,532 DEBUG Processing 250/319 atomic regions from SNP 74949 to 75550 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:43,588 DEBUG Processing 418/784 atomic regions from SNP 125309 to 125909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:43,596 DEBUG Processing 206/598 atomic regions from SNP 61674 to 62274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:43,637 DEBUG Processing 395/786 atomic regions from SNP 118231 to 118831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:43,666 DEBUG Processing 326/946 atomic regions from SNP 97711 to 98311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:43,726 DEBUG Processing 251/319 atomic regions from SNP 75250 to 75851 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:43,777 DEBUG Processing 287/1054 atomic regions from SNP 85887 to 86487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:43,800 DEBUG Processing 419/784 atomic regions from SNP 125609 to 126209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:43,806 DEBUG Processing 207/598 atomic regions from SNP 61974 to 62574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:43,847 DEBUG Processing 396/786 atomic regions from SNP 118531 to 119131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:43,900 DEBUG Processing 327/946 atomic regions from SNP 98011 to 98611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:43,922 DEBUG Processing 252/319 atomic regions from SNP 75551 to 76152 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:44,013 DEBUG Processing 420/784 atomic regions from SNP 125909 to 126509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:44,016 DEBUG Processing 208/598 atomic regions from SNP 62274 to 62874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:44,022 DEBUG Processing 288/1054 atomic regions from SNP 86187 to 86787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:44,058 DEBUG Processing 397/786 atomic regions from SNP 118831 to 119431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:44,115 DEBUG Processing 253/319 atomic regions from SNP 75852 to 76453 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:44,133 DEBUG Processing 328/946 atomic regions from SNP 98311 to 98911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:44,227 DEBUG Processing 421/784 atomic regions from SNP 126209 to 126809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:44,228 DEBUG Processing 209/598 atomic regions from SNP 62574 to 63174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:44,267 DEBUG Processing 289/1054 atomic regions from SNP 86487 to 87087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:44,271 DEBUG Processing 398/786 atomic regions from SNP 119131 to 119731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:44,312 DEBUG Processing 254/319 atomic regions from SNP 76153 to 76754 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:44,372 DEBUG Processing 329/946 atomic regions from SNP 98611 to 99211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:44,436 DEBUG Processing 210/598 atomic regions from SNP 62874 to 63474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:44,437 DEBUG Processing 422/784 atomic regions from SNP 126509 to 127109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:44,484 DEBUG Processing 399/786 atomic regions from SNP 119431 to 120031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:44,511 DEBUG Processing 255/319 atomic regions from SNP 76454 to 77055 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:44,515 DEBUG Processing 290/1054 atomic regions from SNP 86787 to 87387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:44,603 DEBUG Processing 330/946 atomic regions from SNP 98911 to 99511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:44,646 DEBUG Processing 211/598 atomic regions from SNP 63174 to 63774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:44,647 DEBUG Processing 423/784 atomic regions from SNP 126809 to 127409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:44,701 DEBUG Processing 400/786 atomic regions from SNP 119731 to 120331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:44,712 DEBUG Processing 256/319 atomic regions from SNP 76755 to 77356 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:44,766 DEBUG Processing 291/1054 atomic regions from SNP 87087 to 87687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:44,836 DEBUG Processing 331/946 atomic regions from SNP 99211 to 99811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:44,853 DEBUG Processing 212/598 atomic regions from SNP 63474 to 64074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:44,855 DEBUG Processing 424/784 atomic regions from SNP 127109 to 127709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:44,910 DEBUG Processing 257/319 atomic regions from SNP 77056 to 77657 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:44,914 DEBUG Processing 401/786 atomic regions from SNP 120031 to 120631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:45,011 DEBUG Processing 292/1054 atomic regions from SNP 87387 to 87987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:45,063 DEBUG Processing 213/598 atomic regions from SNP 63774 to 64374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:45,067 DEBUG Processing 332/946 atomic regions from SNP 99511 to 100111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:45,067 DEBUG Processing 425/784 atomic regions from SNP 127409 to 128009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:45,107 DEBUG Processing 258/319 atomic regions from SNP 77357 to 77958 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:45,143 DEBUG Processing 402/786 atomic regions from SNP 120331 to 120931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:45,253 DEBUG Processing 293/1054 atomic regions from SNP 87687 to 88287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:45,275 DEBUG Processing 214/598 atomic regions from SNP 64074 to 64674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:45,280 DEBUG Processing 426/784 atomic regions from SNP 127709 to 128309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:45,301 DEBUG Processing 333/946 atomic regions from SNP 99811 to 100411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:45,303 DEBUG Processing 259/319 atomic regions from SNP 77658 to 78259 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:45,352 DEBUG Processing 403/786 atomic regions from SNP 120631 to 121231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:45,488 DEBUG Processing 215/598 atomic regions from SNP 64374 to 64974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:45,495 DEBUG Processing 427/784 atomic regions from SNP 128009 to 128609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:45,499 DEBUG Processing 294/1054 atomic regions from SNP 87987 to 88587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:45,502 DEBUG Processing 260/319 atomic regions from SNP 77959 to 78560 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:45,536 DEBUG Processing 334/946 atomic regions from SNP 100111 to 100711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:45,563 DEBUG Processing 404/786 atomic regions from SNP 120931 to 121531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:45,706 DEBUG Processing 261/319 atomic regions from SNP 78260 to 78861 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:45,707 DEBUG Processing 216/598 atomic regions from SNP 64674 to 65274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:45,715 DEBUG Processing 428/784 atomic regions from SNP 128309 to 128909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:45,753 DEBUG Processing 295/1054 atomic regions from SNP 88287 to 88887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:45,773 DEBUG Processing 335/946 atomic regions from SNP 100411 to 101011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:45,778 DEBUG Processing 405/786 atomic regions from SNP 121231 to 121831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:45,904 DEBUG Processing 262/319 atomic regions from SNP 78561 to 79162 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:45,916 DEBUG Processing 217/598 atomic regions from SNP 64974 to 65574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:45,925 DEBUG Processing 429/784 atomic regions from SNP 128609 to 129209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:45,990 DEBUG Processing 406/786 atomic regions from SNP 121531 to 122131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:46,003 DEBUG Processing 296/1054 atomic regions from SNP 88587 to 89187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:46,006 DEBUG Processing 336/946 atomic regions from SNP 100711 to 101311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:46,099 DEBUG Processing 263/319 atomic regions from SNP 78862 to 79463 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:46,119 DEBUG Processing 218/598 atomic regions from SNP 65274 to 65874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:46,133 DEBUG Processing 430/784 atomic regions from SNP 128909 to 129509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:46,199 DEBUG Processing 407/786 atomic regions from SNP 121831 to 122431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:46,234 DEBUG Processing 337/946 atomic regions from SNP 101011 to 101611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:46,249 DEBUG Processing 297/1054 atomic regions from SNP 88887 to 89487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:46,290 DEBUG Processing 264/319 atomic regions from SNP 79163 to 79764 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:46,324 DEBUG Processing 219/598 atomic regions from SNP 65574 to 66174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:46,340 DEBUG Processing 431/784 atomic regions from SNP 129209 to 129809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:46,408 DEBUG Processing 408/786 atomic regions from SNP 122131 to 122731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:46,466 DEBUG Processing 338/946 atomic regions from SNP 101311 to 101911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:46,485 DEBUG Processing 265/319 atomic regions from SNP 79464 to 80065 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:46,495 DEBUG Processing 298/1054 atomic regions from SNP 89187 to 89787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:46,530 DEBUG Processing 220/598 atomic regions from SNP 65874 to 66474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:46,546 DEBUG Processing 432/784 atomic regions from SNP 129509 to 130109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:46,616 DEBUG Processing 409/786 atomic regions from SNP 122431 to 123031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:46,681 DEBUG Processing 266/319 atomic regions from SNP 79765 to 80366 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:46,696 DEBUG Processing 339/946 atomic regions from SNP 101611 to 102211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:46,737 DEBUG Processing 221/598 atomic regions from SNP 66174 to 66774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:46,739 DEBUG Processing 299/1054 atomic regions from SNP 89487 to 90087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:46,753 DEBUG Processing 433/784 atomic regions from SNP 129809 to 130409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:46,823 DEBUG Processing 410/786 atomic regions from SNP 122731 to 123331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:46,878 DEBUG Processing 267/319 atomic regions from SNP 80066 to 80667 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:46,926 DEBUG Processing 340/946 atomic regions from SNP 101911 to 102511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:46,944 DEBUG Processing 222/598 atomic regions from SNP 66474 to 67074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:46,960 DEBUG Processing 434/784 atomic regions from SNP 130109 to 130709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:46,981 DEBUG Processing 300/1054 atomic regions from SNP 89787 to 90387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:47,031 DEBUG Processing 411/786 atomic regions from SNP 123031 to 123631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:47,073 DEBUG Processing 268/319 atomic regions from SNP 80367 to 80968 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:47,151 DEBUG Processing 223/598 atomic regions from SNP 66774 to 67374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:47,156 DEBUG Processing 341/946 atomic regions from SNP 102211 to 102811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:47,168 DEBUG Processing 435/784 atomic regions from SNP 130409 to 131009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:47,224 DEBUG Processing 301/1054 atomic regions from SNP 90087 to 90687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:47,258 DEBUG Processing 412/786 atomic regions from SNP 123331 to 123931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:47,267 DEBUG Processing 269/319 atomic regions from SNP 80668 to 81269 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:47,358 DEBUG Processing 224/598 atomic regions from SNP 67074 to 67674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:47,376 DEBUG Processing 436/784 atomic regions from SNP 130709 to 131309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:47,385 DEBUG Processing 342/946 atomic regions from SNP 102511 to 103111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:47,464 DEBUG Processing 270/319 atomic regions from SNP 80969 to 81570 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:47,472 DEBUG Processing 302/1054 atomic regions from SNP 90387 to 90987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:47,500 DEBUG Processing 413/786 atomic regions from SNP 123631 to 124231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:47,568 DEBUG Processing 225/598 atomic regions from SNP 67374 to 67974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:47,588 DEBUG Processing 437/784 atomic regions from SNP 131009 to 131609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:47,617 DEBUG Processing 343/946 atomic regions from SNP 102811 to 103411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:47,668 DEBUG Processing 271/319 atomic regions from SNP 81270 to 81870 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:47,725 DEBUG Processing 303/1054 atomic regions from SNP 90687 to 91287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:47,742 DEBUG Processing 414/786 atomic regions from SNP 123931 to 124531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:47,777 DEBUG Processing 226/598 atomic regions from SNP 67674 to 68274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:47,798 DEBUG Processing 438/784 atomic regions from SNP 131309 to 131909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:47,845 DEBUG Processing 344/946 atomic regions from SNP 103111 to 103711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:47,864 DEBUG Processing 272/319 atomic regions from SNP 81570 to 82170 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:47,970 DEBUG Processing 304/1054 atomic regions from SNP 90987 to 91587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:47,980 DEBUG Processing 415/786 atomic regions from SNP 124231 to 124831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:47,984 DEBUG Processing 227/598 atomic regions from SNP 67974 to 68574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:48,008 DEBUG Processing 439/784 atomic regions from SNP 131609 to 132209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:48,059 DEBUG Processing 273/319 atomic regions from SNP 81870 to 82470 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:48,072 DEBUG Processing 345/946 atomic regions from SNP 103411 to 104011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:48,192 DEBUG Processing 228/598 atomic regions from SNP 68274 to 68874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:48,213 DEBUG Processing 305/1054 atomic regions from SNP 91287 to 91887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:48,216 DEBUG Processing 440/784 atomic regions from SNP 131909 to 132509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:48,224 DEBUG Processing 416/786 atomic regions from SNP 124531 to 125131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:48,254 DEBUG Processing 274/319 atomic regions from SNP 82170 to 82770 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:48,299 DEBUG Processing 346/946 atomic regions from SNP 103711 to 104311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:48,398 DEBUG Processing 229/598 atomic regions from SNP 68574 to 69174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:48,425 DEBUG Processing 441/784 atomic regions from SNP 132209 to 132809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:48,451 DEBUG Processing 275/319 atomic regions from SNP 82470 to 83070 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:48,460 DEBUG Processing 306/1054 atomic regions from SNP 91587 to 92187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:48,467 DEBUG Processing 417/786 atomic regions from SNP 124831 to 125431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:48,530 DEBUG Processing 347/946 atomic regions from SNP 104011 to 104611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:48,606 DEBUG Processing 230/598 atomic regions from SNP 68874 to 69474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:48,631 DEBUG Processing 442/784 atomic regions from SNP 132509 to 133109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:48,650 DEBUG Processing 276/319 atomic regions from SNP 82770 to 83370 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:48,700 DEBUG Processing 418/786 atomic regions from SNP 125131 to 125731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:48,709 DEBUG Processing 307/1054 atomic regions from SNP 91887 to 92487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:48,760 DEBUG Processing 348/946 atomic regions from SNP 104311 to 104911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:48,813 DEBUG Processing 231/598 atomic regions from SNP 69174 to 69774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:48,840 DEBUG Processing 443/784 atomic regions from SNP 132809 to 133409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:48,850 DEBUG Processing 277/319 atomic regions from SNP 83070 to 83670 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:48,941 DEBUG Processing 419/786 atomic regions from SNP 125431 to 126031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:48,958 DEBUG Processing 308/1054 atomic regions from SNP 92187 to 92787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:48,991 DEBUG Processing 349/946 atomic regions from SNP 104611 to 105211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:49,023 DEBUG Processing 232/598 atomic regions from SNP 69474 to 70074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:49,045 DEBUG Processing 278/319 atomic regions from SNP 83370 to 83970 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:49,048 DEBUG Processing 444/784 atomic regions from SNP 133109 to 133709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:49,186 DEBUG Processing 420/786 atomic regions from SNP 125731 to 126331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:49,211 DEBUG Processing 309/1054 atomic regions from SNP 92487 to 93087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:49,225 DEBUG Processing 350/946 atomic regions from SNP 104911 to 105511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:49,235 DEBUG Processing 233/598 atomic regions from SNP 69774 to 70374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:49,243 DEBUG Processing 279/319 atomic regions from SNP 83670 to 84270 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:49,258 DEBUG Processing 445/784 atomic regions from SNP 133409 to 134009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:49,435 DEBUG Processing 421/786 atomic regions from SNP 126031 to 126631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:49,447 DEBUG Processing 280/319 atomic regions from SNP 83970 to 84570 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:49,451 DEBUG Processing 234/598 atomic regions from SNP 70074 to 70674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:49,462 DEBUG Processing 351/946 atomic regions from SNP 105211 to 105811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:49,466 DEBUG Processing 310/1054 atomic regions from SNP 92787 to 93387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:49,471 DEBUG Processing 446/784 atomic regions from SNP 133709 to 134309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:49,653 DEBUG Processing 281/319 atomic regions from SNP 84270 to 84870 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:49,665 DEBUG Processing 235/598 atomic regions from SNP 70374 to 70974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:49,686 DEBUG Processing 422/786 atomic regions from SNP 126331 to 126931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:49,686 DEBUG Processing 447/784 atomic regions from SNP 134009 to 134609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:49,698 DEBUG Processing 352/946 atomic regions from SNP 105511 to 106111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:49,722 DEBUG Processing 311/1054 atomic regions from SNP 93087 to 93687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:49,853 DEBUG Processing 282/319 atomic regions from SNP 84570 to 85170 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:49,879 DEBUG Processing 236/598 atomic regions from SNP 70674 to 71274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:49,902 DEBUG Processing 448/784 atomic regions from SNP 134309 to 134909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:49,910 DEBUG Processing 423/786 atomic regions from SNP 126631 to 127231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:49,933 DEBUG Processing 353/946 atomic regions from SNP 105811 to 106411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:49,972 DEBUG Processing 312/1054 atomic regions from SNP 93387 to 93987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:50,050 DEBUG Processing 283/319 atomic regions from SNP 84870 to 85470 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:50,093 DEBUG Processing 237/598 atomic regions from SNP 70974 to 71574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:50,117 DEBUG Processing 449/784 atomic regions from SNP 134609 to 135209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:50,139 DEBUG Processing 424/786 atomic regions from SNP 126931 to 127531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:50,164 DEBUG Processing 354/946 atomic regions from SNP 106111 to 106711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:50,224 DEBUG Processing 313/1054 atomic regions from SNP 93687 to 94287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:50,251 DEBUG Processing 284/319 atomic regions from SNP 85170 to 85770 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:50,303 DEBUG Processing 238/598 atomic regions from SNP 71274 to 71874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:50,330 DEBUG Processing 450/784 atomic regions from SNP 134909 to 135509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:50,357 DEBUG Processing 425/786 atomic regions from SNP 127231 to 127831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:50,397 DEBUG Processing 355/946 atomic regions from SNP 106411 to 107011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:50,456 DEBUG Processing 285/319 atomic regions from SNP 85470 to 86070 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:50,480 DEBUG Processing 314/1054 atomic regions from SNP 93987 to 94587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:50,516 DEBUG Processing 239/598 atomic regions from SNP 71574 to 72174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:50,546 DEBUG Processing 451/784 atomic regions from SNP 135209 to 135809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:50,573 DEBUG Processing 426/786 atomic regions from SNP 127531 to 128131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:50,626 DEBUG Processing 356/946 atomic regions from SNP 106711 to 107311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:50,659 DEBUG Processing 286/319 atomic regions from SNP 85770 to 86370 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:50,725 DEBUG Processing 240/598 atomic regions from SNP 71874 to 72474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:50,734 DEBUG Processing 315/1054 atomic regions from SNP 94287 to 94887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:50,756 DEBUG Processing 452/784 atomic regions from SNP 135509 to 136109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:50,815 DEBUG Processing 427/786 atomic regions from SNP 127831 to 128431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:50,852 DEBUG Processing 357/946 atomic regions from SNP 107011 to 107611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:50,860 DEBUG Processing 287/319 atomic regions from SNP 86070 to 86670 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:50,932 DEBUG Processing 241/598 atomic regions from SNP 72174 to 72774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:50,966 DEBUG Processing 453/784 atomic regions from SNP 135809 to 136409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:50,982 DEBUG Processing 316/1054 atomic regions from SNP 94587 to 95187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:51,054 DEBUG Processing 428/786 atomic regions from SNP 128131 to 128731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:51,060 DEBUG Processing 288/319 atomic regions from SNP 86370 to 86970 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:51,080 DEBUG Processing 358/946 atomic regions from SNP 107311 to 107911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:51,142 DEBUG Processing 242/598 atomic regions from SNP 72474 to 73074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:51,176 DEBUG Processing 454/784 atomic regions from SNP 136109 to 136709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:51,227 DEBUG Processing 317/1054 atomic regions from SNP 94887 to 95487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:51,259 DEBUG Processing 289/319 atomic regions from SNP 86670 to 87270 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:51,291 DEBUG Processing 429/786 atomic regions from SNP 128431 to 129031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:51,306 DEBUG Processing 359/946 atomic regions from SNP 107611 to 108211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:51,350 DEBUG Processing 243/598 atomic regions from SNP 72774 to 73374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:51,386 DEBUG Processing 455/784 atomic regions from SNP 136409 to 137009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:51,455 DEBUG Processing 290/319 atomic regions from SNP 86970 to 87570 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:51,471 DEBUG Processing 318/1054 atomic regions from SNP 95187 to 95787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:51,501 DEBUG Processing 430/786 atomic regions from SNP 128731 to 129331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:51,533 DEBUG Processing 360/946 atomic regions from SNP 107911 to 108511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:51,557 DEBUG Processing 244/598 atomic regions from SNP 73074 to 73674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:51,594 DEBUG Processing 456/784 atomic regions from SNP 136709 to 137309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:51,651 DEBUG Processing 291/319 atomic regions from SNP 87270 to 87870 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:51,712 DEBUG Processing 431/786 atomic regions from SNP 129031 to 129631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:51,716 DEBUG Processing 319/1054 atomic regions from SNP 95487 to 96087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:51,762 DEBUG Processing 361/946 atomic regions from SNP 108211 to 108811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:51,768 DEBUG Processing 245/598 atomic regions from SNP 73374 to 73974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:51,805 DEBUG Processing 457/784 atomic regions from SNP 137009 to 137609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:51,848 DEBUG Processing 292/319 atomic regions from SNP 87570 to 88170 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:51,924 DEBUG Processing 432/786 atomic regions from SNP 129331 to 129931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:51,962 DEBUG Processing 320/1054 atomic regions from SNP 95787 to 96387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:51,980 DEBUG Processing 246/598 atomic regions from SNP 73674 to 74274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:51,995 DEBUG Processing 362/946 atomic regions from SNP 108511 to 109111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:52,016 DEBUG Processing 458/784 atomic regions from SNP 137309 to 137909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:52,044 DEBUG Processing 293/319 atomic regions from SNP 87870 to 88470 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:52,135 DEBUG Processing 433/786 atomic regions from SNP 129631 to 130231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:52,191 DEBUG Processing 247/598 atomic regions from SNP 73974 to 74574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:52,209 DEBUG Processing 321/1054 atomic regions from SNP 96087 to 96687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:52,228 DEBUG Processing 459/784 atomic regions from SNP 137609 to 138209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:52,228 DEBUG Processing 363/946 atomic regions from SNP 108811 to 109411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:52,242 DEBUG Processing 294/319 atomic regions from SNP 88170 to 88770 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:52,345 DEBUG Processing 434/786 atomic regions from SNP 129931 to 130531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:52,401 DEBUG Processing 248/598 atomic regions from SNP 74274 to 74874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:52,439 DEBUG Processing 295/319 atomic regions from SNP 88470 to 89070 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:52,443 DEBUG Processing 460/784 atomic regions from SNP 137909 to 138509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:52,457 DEBUG Processing 322/1054 atomic regions from SNP 96387 to 96987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:52,461 DEBUG Processing 364/946 atomic regions from SNP 109111 to 109711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:52,554 DEBUG Processing 435/786 atomic regions from SNP 130231 to 130831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:52,613 DEBUG Processing 249/598 atomic regions from SNP 74574 to 75174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:52,636 DEBUG Processing 296/319 atomic regions from SNP 88770 to 89370 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:52,661 DEBUG Processing 461/784 atomic regions from SNP 138209 to 138809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:52,699 DEBUG Processing 365/946 atomic regions from SNP 109411 to 110011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:52,704 DEBUG Processing 323/1054 atomic regions from SNP 96687 to 97287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:52,762 DEBUG Processing 436/786 atomic regions from SNP 130531 to 131131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:52,823 DEBUG Processing 250/598 atomic regions from SNP 74874 to 75474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:52,836 DEBUG Processing 297/319 atomic regions from SNP 89070 to 89670 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:52,873 DEBUG Processing 462/784 atomic regions from SNP 138509 to 139109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:52,928 DEBUG Processing 366/946 atomic regions from SNP 109711 to 110311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:52,951 DEBUG Processing 324/1054 atomic regions from SNP 96987 to 97587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:52,974 DEBUG Processing 437/786 atomic regions from SNP 130831 to 131431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:53,032 DEBUG Processing 251/598 atomic regions from SNP 75174 to 75774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:53,033 DEBUG Processing 298/319 atomic regions from SNP 89370 to 89970 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:53,084 DEBUG Processing 463/784 atomic regions from SNP 138809 to 139409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:53,156 DEBUG Processing 367/946 atomic regions from SNP 110011 to 110611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:53,188 DEBUG Processing 438/786 atomic regions from SNP 131131 to 131731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:53,212 DEBUG Processing 325/1054 atomic regions from SNP 97287 to 97887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:53,234 DEBUG Processing 299/319 atomic regions from SNP 89670 to 90270 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:53,242 DEBUG Processing 252/598 atomic regions from SNP 75474 to 76074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:53,296 DEBUG Processing 464/784 atomic regions from SNP 139109 to 139709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:53,388 DEBUG Processing 368/946 atomic regions from SNP 110311 to 110911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:53,402 DEBUG Processing 439/786 atomic regions from SNP 131431 to 132031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:53,438 DEBUG Processing 300/319 atomic regions from SNP 89970 to 90570 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:53,453 DEBUG Processing 253/598 atomic regions from SNP 75774 to 76374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:53,486 DEBUG Processing 326/1054 atomic regions from SNP 97587 to 98187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:53,507 DEBUG Processing 465/784 atomic regions from SNP 139409 to 140009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:53,611 DEBUG Processing 440/786 atomic regions from SNP 131731 to 132331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:53,618 DEBUG Processing 369/946 atomic regions from SNP 110611 to 111211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:53,639 DEBUG Processing 301/319 atomic regions from SNP 90270 to 90870 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:53,667 DEBUG Processing 254/598 atomic regions from SNP 76074 to 76674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:53,722 DEBUG Processing 466/784 atomic regions from SNP 139709 to 140309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:53,755 DEBUG Processing 327/1054 atomic regions from SNP 97887 to 98487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:53,824 DEBUG Processing 441/786 atomic regions from SNP 132031 to 132631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:53,838 DEBUG Processing 302/319 atomic regions from SNP 90570 to 91170 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:53,850 DEBUG Processing 370/946 atomic regions from SNP 110911 to 111511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:53,878 DEBUG Processing 255/598 atomic regions from SNP 76374 to 76974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:53,933 DEBUG Processing 467/784 atomic regions from SNP 140009 to 140609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,003 DEBUG Processing 328/1054 atomic regions from SNP 98187 to 98787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:54,035 DEBUG Processing 303/319 atomic regions from SNP 90870 to 91470 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:54,037 DEBUG Processing 442/786 atomic regions from SNP 132331 to 132931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:54,080 DEBUG Processing 371/946 atomic regions from SNP 111211 to 111811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:54,087 DEBUG Processing 256/598 atomic regions from SNP 76674 to 77274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:54,144 DEBUG Processing 468/784 atomic regions from SNP 140309 to 140909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,238 DEBUG Processing 304/319 atomic regions from SNP 91170 to 91770 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:54,253 DEBUG Processing 443/786 atomic regions from SNP 132631 to 133231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:54,254 DEBUG Processing 329/1054 atomic regions from SNP 98487 to 99087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:54,296 DEBUG Processing 257/598 atomic regions from SNP 76974 to 77574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:54,312 DEBUG Processing 372/946 atomic regions from SNP 111511 to 112111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:54,358 DEBUG Processing 469/784 atomic regions from SNP 140609 to 141209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,445 DEBUG Processing 305/319 atomic regions from SNP 91470 to 92070 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:54,477 DEBUG Processing 444/786 atomic regions from SNP 132931 to 133531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:54,507 DEBUG Processing 258/598 atomic regions from SNP 77274 to 77874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:54,511 DEBUG Processing 330/1054 atomic regions from SNP 98787 to 99387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:54,545 DEBUG Processing 373/946 atomic regions from SNP 111811 to 112411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:54,568 DEBUG Processing 470/784 atomic regions from SNP 140909 to 141509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,645 DEBUG Processing 306/319 atomic regions from SNP 91770 to 92370 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:54,694 DEBUG Processing 445/786 atomic regions from SNP 133231 to 133831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:54,717 DEBUG Processing 259/598 atomic regions from SNP 77574 to 78174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:54,763 DEBUG Processing 331/1054 atomic regions from SNP 99087 to 99687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:54,777 DEBUG Processing 374/946 atomic regions from SNP 112111 to 112711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:54,779 DEBUG Processing 471/784 atomic regions from SNP 141209 to 141809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,843 DEBUG Processing 307/319 atomic regions from SNP 92070 to 92670 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:54,907 DEBUG Processing 446/786 atomic regions from SNP 133531 to 134131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:54,925 DEBUG Processing 260/598 atomic regions from SNP 77874 to 78474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:54,989 DEBUG Processing 472/784 atomic regions from SNP 141509 to 142109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,009 DEBUG Processing 375/946 atomic regions from SNP 112411 to 113011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:55,011 DEBUG Processing 332/1054 atomic regions from SNP 99387 to 99987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:55,039 DEBUG Processing 308/319 atomic regions from SNP 92370 to 92970 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:55,124 DEBUG Processing 447/786 atomic regions from SNP 133831 to 134431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:55,134 DEBUG Processing 261/598 atomic regions from SNP 78174 to 78774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:55,203 DEBUG Processing 473/784 atomic regions from SNP 141809 to 142409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,237 DEBUG Processing 309/319 atomic regions from SNP 92670 to 93270 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:55,242 DEBUG Processing 376/946 atomic regions from SNP 112711 to 113311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:55,262 DEBUG Processing 333/1054 atomic regions from SNP 99687 to 100287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:55,339 DEBUG Processing 262/598 atomic regions from SNP 78474 to 79074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:55,343 DEBUG Processing 448/786 atomic regions from SNP 134131 to 134731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:55,418 DEBUG Processing 474/784 atomic regions from SNP 142109 to 142709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,439 DEBUG Processing 310/319 atomic regions from SNP 92970 to 93570 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:55,472 DEBUG Processing 377/946 atomic regions from SNP 113011 to 113611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:55,508 DEBUG Processing 334/1054 atomic regions from SNP 99987 to 100587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:55,543 DEBUG Processing 263/598 atomic regions from SNP 78774 to 79374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:55,575 DEBUG Processing 449/786 atomic regions from SNP 134431 to 135031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:55,629 DEBUG Processing 475/784 atomic regions from SNP 142409 to 143009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,642 DEBUG Processing 311/319 atomic regions from SNP 93270 to 93870 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:55,701 DEBUG Processing 378/946 atomic regions from SNP 113311 to 113911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:55,748 DEBUG Processing 264/598 atomic regions from SNP 79074 to 79674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:55,754 DEBUG Processing 335/1054 atomic regions from SNP 100287 to 100887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:55,813 DEBUG Processing 450/786 atomic regions from SNP 134731 to 135331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:55,839 DEBUG Processing 476/784 atomic regions from SNP 142709 to 143309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,844 DEBUG Processing 312/319 atomic regions from SNP 93570 to 94170 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:55,933 DEBUG Processing 379/946 atomic regions from SNP 113611 to 114211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:55,956 DEBUG Processing 265/598 atomic regions from SNP 79374 to 79974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:56,004 DEBUG Processing 336/1054 atomic regions from SNP 100587 to 101187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:56,047 DEBUG Processing 313/319 atomic regions from SNP 93870 to 94470 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:56,051 DEBUG Processing 477/784 atomic regions from SNP 143009 to 143609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,060 DEBUG Processing 451/786 atomic regions from SNP 135031 to 135631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,164 DEBUG Processing 380/946 atomic regions from SNP 113911 to 114511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:56,166 DEBUG Processing 266/598 atomic regions from SNP 79674 to 80274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:56,248 DEBUG Processing 314/319 atomic regions from SNP 94170 to 94770 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:56,255 DEBUG Processing 337/1054 atomic regions from SNP 100887 to 101487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:56,260 DEBUG Processing 478/784 atomic regions from SNP 143309 to 143909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,297 DEBUG Processing 452/786 atomic regions from SNP 135331 to 135931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,374 DEBUG Processing 267/598 atomic regions from SNP 79974 to 80574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:56,394 DEBUG Processing 381/946 atomic regions from SNP 114211 to 114811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:56,450 DEBUG Processing 315/319 atomic regions from SNP 94470 to 95070 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:56,472 DEBUG Processing 479/784 atomic regions from SNP 143609 to 144209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,506 DEBUG Processing 338/1054 atomic regions from SNP 101187 to 101787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:56,519 DEBUG Processing 453/786 atomic regions from SNP 135631 to 136231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,580 DEBUG Processing 268/598 atomic regions from SNP 80274 to 80874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:56,623 DEBUG Processing 382/946 atomic regions from SNP 114511 to 115111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:56,653 DEBUG Processing 316/319 atomic regions from SNP 94770 to 95370 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:56,683 DEBUG Processing 480/784 atomic regions from SNP 143909 to 144509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,753 DEBUG Processing 339/1054 atomic regions from SNP 101487 to 102087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:56,754 DEBUG Processing 454/786 atomic regions from SNP 135931 to 136531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,786 DEBUG Processing 269/598 atomic regions from SNP 80574 to 81174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:56,852 DEBUG Processing 383/946 atomic regions from SNP 114811 to 115411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:56,853 DEBUG Processing 317/319 atomic regions from SNP 95070 to 95670 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:56,896 DEBUG Processing 481/784 atomic regions from SNP 144209 to 144809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,990 DEBUG Processing 270/598 atomic regions from SNP 80874 to 81474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:56,995 DEBUG Processing 455/786 atomic regions from SNP 136231 to 136831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,997 DEBUG Processing 340/1054 atomic regions from SNP 101787 to 102387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:57,053 DEBUG Processing 318/319 atomic regions from SNP 95370 to 95970 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:57,083 DEBUG Processing 384/946 atomic regions from SNP 115111 to 115711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:57,108 DEBUG Processing 482/784 atomic regions from SNP 144509 to 145109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,195 DEBUG Processing 271/598 atomic regions from SNP 81174 to 81774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:57,231 DEBUG Processing 456/786 atomic regions from SNP 136531 to 137131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:57,242 DEBUG Processing 341/1054 atomic regions from SNP 102087 to 102687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:57,251 DEBUG Processing 319/319 atomic regions from SNP 95670 to 96270 for chrX (subchromosome 6 of 7). 2025-01-31 09:40:57,315 DEBUG Processing 385/946 atomic regions from SNP 115411 to 116011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:57,320 DEBUG Processing 483/784 atomic regions from SNP 144809 to 145409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,361 DEBUG Unique SNPs positions in subchromosome 6: 96271 2025-01-31 09:40:57,402 DEBUG Processing 272/598 atomic regions from SNP 81474 to 82074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:57,468 DEBUG Processing 457/786 atomic regions from SNP 136831 to 137431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:57,476 DEBUG Subchromosome time: 77.79601106606424, subchromosome SNPs: 96271 2025-01-31 09:40:57,490 DEBUG Processing 342/1054 atomic regions from SNP 102387 to 102987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:57,490 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:57,531 DEBUG Processing 484/784 atomic regions from SNP 145109 to 145709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,547 DEBUG Processing 386/946 atomic regions from SNP 115711 to 116311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:57,608 DEBUG Processing 273/598 atomic regions from SNP 81774 to 82374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:57,722 DEBUG Processing 458/786 atomic regions from SNP 137131 to 137731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:57,746 DEBUG Processing 343/1054 atomic regions from SNP 102687 to 103287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:57,749 DEBUG Processing 485/784 atomic regions from SNP 145409 to 146009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,785 DEBUG Processing 387/946 atomic regions from SNP 116011 to 116611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:57,815 DEBUG Processing 274/598 atomic regions from SNP 82074 to 82674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:57,964 DEBUG Processing 486/784 atomic regions from SNP 145709 to 146309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,973 DEBUG Processing 459/786 atomic regions from SNP 137431 to 138031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:57,999 DEBUG Processing 344/1054 atomic regions from SNP 102987 to 103587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:58,019 DEBUG Processing 388/946 atomic regions from SNP 116311 to 116911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:58,022 DEBUG Processing 275/598 atomic regions from SNP 82374 to 82974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:58,174 DEBUG Processing 487/784 atomic regions from SNP 146009 to 146609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:58,214 DEBUG Processing 460/786 atomic regions from SNP 137731 to 138331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,228 DEBUG Processing 276/598 atomic regions from SNP 82674 to 83274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:58,248 DEBUG Processing 345/1054 atomic regions from SNP 103287 to 103887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:58,249 DEBUG Processing 389/946 atomic regions from SNP 116611 to 117211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:58,388 DEBUG Processing 488/784 atomic regions from SNP 146309 to 146909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:58,427 DEBUG Processing 461/786 atomic regions from SNP 138031 to 138631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,440 DEBUG Processing 277/598 atomic regions from SNP 82974 to 83574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:58,479 DEBUG Processing 390/946 atomic regions from SNP 116911 to 117511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:58,497 DEBUG Processing 346/1054 atomic regions from SNP 103587 to 104187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:58,597 DEBUG Processing 489/784 atomic regions from SNP 146609 to 147209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:58,638 DEBUG Processing 462/786 atomic regions from SNP 138331 to 138931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,649 DEBUG Processing 278/598 atomic regions from SNP 83274 to 83874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:58,702 DEBUG Processing 391/946 atomic regions from SNP 117211 to 117811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:58,743 DEBUG Processing 347/1054 atomic regions from SNP 103887 to 104487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:58,805 DEBUG Processing 490/784 atomic regions from SNP 146909 to 147509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:58,848 DEBUG Processing 463/786 atomic regions from SNP 138631 to 139231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,858 DEBUG Processing 279/598 atomic regions from SNP 83574 to 84174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:58,928 DEBUG Processing 392/946 atomic regions from SNP 117511 to 118111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:58,989 DEBUG Processing 348/1054 atomic regions from SNP 104187 to 104787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:59,013 DEBUG Processing 491/784 atomic regions from SNP 147209 to 147809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,055 DEBUG Processing 464/786 atomic regions from SNP 138931 to 139531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,064 DEBUG Processing 280/598 atomic regions from SNP 83874 to 84474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:59,155 DEBUG Processing 393/946 atomic regions from SNP 117811 to 118411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:59,220 DEBUG Processing 492/784 atomic regions from SNP 147509 to 148109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,235 DEBUG Processing 349/1054 atomic regions from SNP 104487 to 105087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:59,271 DEBUG Processing 281/598 atomic regions from SNP 84174 to 84774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:59,283 DEBUG Processing 465/786 atomic regions from SNP 139231 to 139831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,379 DEBUG Processing 394/946 atomic regions from SNP 118111 to 118711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:59,428 DEBUG Processing 493/784 atomic regions from SNP 147809 to 148409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,475 DEBUG Processing 282/598 atomic regions from SNP 84474 to 85074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:59,481 DEBUG Processing 350/1054 atomic regions from SNP 104787 to 105387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:59,509 DEBUG Processing 466/786 atomic regions from SNP 139531 to 140131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,605 DEBUG Processing 395/946 atomic regions from SNP 118411 to 119011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:59,637 DEBUG Processing 494/784 atomic regions from SNP 148109 to 148709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,680 DEBUG Processing 283/598 atomic regions from SNP 84774 to 85374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:59,719 DEBUG Processing 467/786 atomic regions from SNP 139831 to 140431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,727 DEBUG Processing 351/1054 atomic regions from SNP 105087 to 105687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:59,832 DEBUG Processing 396/946 atomic regions from SNP 118711 to 119311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:59,848 DEBUG Processing 495/784 atomic regions from SNP 148409 to 149009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,888 DEBUG Processing 284/598 atomic regions from SNP 85074 to 85674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:40:59,930 DEBUG Processing 468/786 atomic regions from SNP 140131 to 140731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,973 DEBUG Processing 352/1054 atomic regions from SNP 105387 to 105987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:00,057 DEBUG Processing 496/784 atomic regions from SNP 148709 to 149309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,058 DEBUG Processing 397/946 atomic regions from SNP 119011 to 119611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:00,095 DEBUG Processing 285/598 atomic regions from SNP 85374 to 85974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:00,141 DEBUG Processing 469/786 atomic regions from SNP 140431 to 141031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,221 DEBUG Processing 353/1054 atomic regions from SNP 105687 to 106287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:00,276 DEBUG Processing 497/784 atomic regions from SNP 149009 to 149609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,300 DEBUG Processing 398/946 atomic regions from SNP 119311 to 119911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:00,303 DEBUG Processing 286/598 atomic regions from SNP 85674 to 86274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:00,351 DEBUG Processing 470/786 atomic regions from SNP 140731 to 141331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,469 DEBUG Processing 354/1054 atomic regions from SNP 105987 to 106587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:00,510 DEBUG Processing 287/598 atomic regions from SNP 85974 to 86574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:00,511 DEBUG Processing 498/784 atomic regions from SNP 149309 to 149909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,550 DEBUG Processing 399/946 atomic regions from SNP 119611 to 120211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:00,565 DEBUG Processing 471/786 atomic regions from SNP 141031 to 141631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,717 DEBUG Processing 355/1054 atomic regions from SNP 106287 to 106887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:00,721 DEBUG Processing 288/598 atomic regions from SNP 86274 to 86874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:00,733 DEBUG Processing 499/784 atomic regions from SNP 149609 to 150209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,775 DEBUG Processing 472/786 atomic regions from SNP 141331 to 141931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,783 DEBUG Processing 400/946 atomic regions from SNP 119911 to 120511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:00,927 DEBUG Processing 289/598 atomic regions from SNP 86574 to 87174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:00,943 DEBUG Processing 500/784 atomic regions from SNP 149909 to 150509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,963 DEBUG Processing 356/1054 atomic regions from SNP 106587 to 107187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:00,986 DEBUG Processing 473/786 atomic regions from SNP 141631 to 142231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,009 DEBUG Processing 401/946 atomic regions from SNP 120211 to 120811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:01,134 DEBUG Processing 290/598 atomic regions from SNP 86874 to 87474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:01,154 DEBUG Processing 501/784 atomic regions from SNP 150209 to 150809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,199 DEBUG Processing 474/786 atomic regions from SNP 141931 to 142531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,213 DEBUG Processing 357/1054 atomic regions from SNP 106887 to 107487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:01,236 DEBUG Processing 402/946 atomic regions from SNP 120511 to 121111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:01,344 DEBUG Processing 291/598 atomic regions from SNP 87174 to 87774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:01,365 DEBUG Processing 502/784 atomic regions from SNP 150509 to 151109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,409 DEBUG Processing 475/786 atomic regions from SNP 142231 to 142831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,459 DEBUG Processing 358/1054 atomic regions from SNP 107187 to 107787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:01,462 DEBUG Processing 403/946 atomic regions from SNP 120811 to 121411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:01,549 DEBUG Processing 292/598 atomic regions from SNP 87474 to 88074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:01,575 DEBUG Processing 503/784 atomic regions from SNP 150809 to 151409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,621 DEBUG Processing 476/786 atomic regions from SNP 142531 to 143131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,686 DEBUG Processing 404/946 atomic regions from SNP 121111 to 121711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:01,702 DEBUG Processing 359/1054 atomic regions from SNP 107487 to 108087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:01,753 DEBUG Processing 293/598 atomic regions from SNP 87774 to 88374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:01,784 DEBUG Processing 504/784 atomic regions from SNP 151109 to 151709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,834 DEBUG Processing 477/786 atomic regions from SNP 142831 to 143431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,910 DEBUG Processing 405/946 atomic regions from SNP 121411 to 122011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:01,945 DEBUG Processing 360/1054 atomic regions from SNP 107787 to 108387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:01,958 DEBUG Processing 294/598 atomic regions from SNP 88074 to 88674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:01,992 DEBUG Processing 505/784 atomic regions from SNP 151409 to 152009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,044 DEBUG Processing 478/786 atomic regions from SNP 143131 to 143731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,135 DEBUG Processing 406/946 atomic regions from SNP 121711 to 122311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:02,161 DEBUG Processing 295/598 atomic regions from SNP 88374 to 88974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:02,190 DEBUG Processing 361/1054 atomic regions from SNP 108087 to 108687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:02,198 DEBUG Processing 506/784 atomic regions from SNP 151709 to 152309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,254 DEBUG Processing 479/786 atomic regions from SNP 143431 to 144031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,365 DEBUG Processing 407/946 atomic regions from SNP 122011 to 122611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:02,372 DEBUG Processing 296/598 atomic regions from SNP 88674 to 89274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:02,410 DEBUG Processing 507/784 atomic regions from SNP 152009 to 152609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,440 DEBUG Processing 362/1054 atomic regions from SNP 108387 to 108987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:02,469 DEBUG Processing 480/786 atomic regions from SNP 143731 to 144331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,580 DEBUG Processing 297/598 atomic regions from SNP 88974 to 89574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:02,595 DEBUG Processing 408/946 atomic regions from SNP 122311 to 122911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:02,621 DEBUG Processing 508/784 atomic regions from SNP 152309 to 152909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,682 DEBUG Processing 481/786 atomic regions from SNP 144031 to 144631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,688 DEBUG Processing 363/1054 atomic regions from SNP 108687 to 109287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:02,788 DEBUG Processing 298/598 atomic regions from SNP 89274 to 89874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:02,826 DEBUG Processing 409/946 atomic regions from SNP 122611 to 123211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:02,832 DEBUG Processing 509/784 atomic regions from SNP 152609 to 153209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,898 DEBUG Processing 482/786 atomic regions from SNP 144331 to 144931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,934 DEBUG Processing 364/1054 atomic regions from SNP 108987 to 109587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:02,994 DEBUG Processing 299/598 atomic regions from SNP 89574 to 90174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:03,041 DEBUG Processing 510/784 atomic regions from SNP 152909 to 153509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,057 DEBUG Processing 410/946 atomic regions from SNP 122911 to 123511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:03,114 DEBUG Processing 483/786 atomic regions from SNP 144631 to 145231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,178 DEBUG Processing 365/1054 atomic regions from SNP 109287 to 109887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:03,198 DEBUG Processing 300/598 atomic regions from SNP 89874 to 90474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:03,252 DEBUG Processing 511/784 atomic regions from SNP 153209 to 153809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,285 DEBUG Processing 411/946 atomic regions from SNP 123211 to 123811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:03,352 DEBUG Processing 484/786 atomic regions from SNP 144931 to 145531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,404 DEBUG Processing 301/598 atomic regions from SNP 90174 to 90774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:03,424 DEBUG Processing 366/1054 atomic regions from SNP 109587 to 110187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:03,462 DEBUG Processing 512/784 atomic regions from SNP 153509 to 154109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,513 DEBUG Processing 412/946 atomic regions from SNP 123511 to 124111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:03,562 DEBUG Processing 485/786 atomic regions from SNP 145231 to 145831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,605 DEBUG Processing 302/598 atomic regions from SNP 90474 to 91074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:03,671 DEBUG Processing 513/784 atomic regions from SNP 153809 to 154409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,673 DEBUG Processing 367/1054 atomic regions from SNP 109887 to 110487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:03,739 DEBUG Processing 413/946 atomic regions from SNP 123811 to 124411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:03,777 DEBUG Processing 486/786 atomic regions from SNP 145531 to 146131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,808 DEBUG Processing 303/598 atomic regions from SNP 90774 to 91374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:03,879 DEBUG Processing 514/784 atomic regions from SNP 154109 to 154709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,925 DEBUG Processing 368/1054 atomic regions from SNP 110187 to 110787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:03,966 DEBUG Processing 414/946 atomic regions from SNP 124111 to 124711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:04,003 DEBUG Processing 487/786 atomic regions from SNP 145831 to 146431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,011 DEBUG Processing 304/598 atomic regions from SNP 91074 to 91674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:04,087 DEBUG Processing 515/784 atomic regions from SNP 154409 to 155009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,192 DEBUG Processing 415/946 atomic regions from SNP 124411 to 125011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:04,198 DEBUG Processing 369/1054 atomic regions from SNP 110487 to 111087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:04,217 DEBUG Processing 305/598 atomic regions from SNP 91374 to 91974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:04,225 DEBUG Processing 488/786 atomic regions from SNP 146131 to 146731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,296 DEBUG Processing 516/784 atomic regions from SNP 154709 to 155309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,415 DEBUG Segmenting atomic regions: 2025-01-31 09:41:04,420 DEBUG Processing 416/946 atomic regions from SNP 124711 to 125311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:04,423 DEBUG Processing 306/598 atomic regions from SNP 91674 to 92274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:04,439 DEBUG Processing 489/786 atomic regions from SNP 146431 to 147031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,446 DEBUG Processing 370/1054 atomic regions from SNP 110787 to 111387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:04,506 DEBUG Processing 517/784 atomic regions from SNP 155009 to 155609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,507 DEBUG Processing 1/199 atomic regions from SNP 0 to 601 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:04,628 DEBUG Processing 307/598 atomic regions from SNP 91974 to 92574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:04,646 DEBUG Processing 417/946 atomic regions from SNP 125011 to 125611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:04,655 DEBUG Processing 490/786 atomic regions from SNP 146731 to 147331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,697 DEBUG Processing 371/1054 atomic regions from SNP 111087 to 111687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:04,710 DEBUG Processing 2/199 atomic regions from SNP 301 to 902 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:04,716 DEBUG Processing 518/784 atomic regions from SNP 155309 to 155909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,831 DEBUG Processing 308/598 atomic regions from SNP 92274 to 92874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:04,873 DEBUG Processing 418/946 atomic regions from SNP 125311 to 125911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:04,881 DEBUG Processing 491/786 atomic regions from SNP 147031 to 147631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,918 DEBUG Processing 3/199 atomic regions from SNP 602 to 1203 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:04,926 DEBUG Processing 519/784 atomic regions from SNP 155609 to 156209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,953 DEBUG Processing 372/1054 atomic regions from SNP 111387 to 111987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:05,034 DEBUG Processing 309/598 atomic regions from SNP 92574 to 93174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:05,101 DEBUG Processing 419/946 atomic regions from SNP 125611 to 126211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:05,118 DEBUG Processing 492/786 atomic regions from SNP 147331 to 147931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,123 DEBUG Processing 4/199 atomic regions from SNP 903 to 1504 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:05,135 DEBUG Processing 520/784 atomic regions from SNP 155909 to 156509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,206 DEBUG Processing 373/1054 atomic regions from SNP 111687 to 112287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:05,236 DEBUG Processing 310/598 atomic regions from SNP 92874 to 93474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:05,329 DEBUG Processing 420/946 atomic regions from SNP 125911 to 126511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:05,330 DEBUG Processing 5/199 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:05,342 DEBUG Processing 493/786 atomic regions from SNP 147631 to 148231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,345 DEBUG Processing 521/784 atomic regions from SNP 156209 to 156809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,440 DEBUG Processing 311/598 atomic regions from SNP 93174 to 93774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:05,457 DEBUG Processing 374/1054 atomic regions from SNP 111987 to 112587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:05,536 DEBUG Processing 6/199 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:05,556 DEBUG Processing 522/784 atomic regions from SNP 156509 to 157109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,560 DEBUG Processing 421/946 atomic regions from SNP 126211 to 126811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:05,564 DEBUG Processing 494/786 atomic regions from SNP 147931 to 148531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,644 DEBUG Processing 312/598 atomic regions from SNP 93474 to 94074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:05,703 DEBUG Processing 375/1054 atomic regions from SNP 112287 to 112887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:05,740 DEBUG Processing 7/199 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:05,768 DEBUG Processing 523/784 atomic regions from SNP 156809 to 157409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,788 DEBUG Processing 495/786 atomic regions from SNP 148231 to 148831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,792 DEBUG Processing 422/946 atomic regions from SNP 126511 to 127111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:05,849 DEBUG Processing 313/598 atomic regions from SNP 93774 to 94374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:05,943 DEBUG Processing 8/199 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:05,952 DEBUG Processing 376/1054 atomic regions from SNP 112587 to 113187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:05,980 DEBUG Processing 524/784 atomic regions from SNP 157109 to 157709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,009 DEBUG Processing 496/786 atomic regions from SNP 148531 to 149131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,025 DEBUG Processing 423/946 atomic regions from SNP 126811 to 127411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:06,055 DEBUG Processing 314/598 atomic regions from SNP 94074 to 94674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:06,143 DEBUG Processing 9/199 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:06,193 DEBUG Processing 525/784 atomic regions from SNP 157409 to 158009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,208 DEBUG Processing 377/1054 atomic regions from SNP 112887 to 113487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:06,246 DEBUG Processing 497/786 atomic regions from SNP 148831 to 149431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,257 DEBUG Processing 424/946 atomic regions from SNP 127111 to 127711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:06,264 DEBUG Processing 315/598 atomic regions from SNP 94374 to 94974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:06,343 DEBUG Processing 10/199 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:06,407 DEBUG Processing 526/784 atomic regions from SNP 157709 to 158309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,469 DEBUG Processing 378/1054 atomic regions from SNP 113187 to 113787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:06,478 DEBUG Processing 316/598 atomic regions from SNP 94674 to 95274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:06,480 DEBUG Processing 498/786 atomic regions from SNP 149131 to 149731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,492 DEBUG Processing 425/946 atomic regions from SNP 127411 to 128011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:06,548 DEBUG Processing 11/199 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:06,616 DEBUG Processing 527/784 atomic regions from SNP 158009 to 158609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,687 DEBUG Processing 317/598 atomic regions from SNP 94974 to 95574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:06,703 DEBUG Processing 499/786 atomic regions from SNP 149431 to 150031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,723 DEBUG Processing 379/1054 atomic regions from SNP 113487 to 114087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:06,726 DEBUG Processing 426/946 atomic regions from SNP 127711 to 128311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:06,749 DEBUG Processing 12/199 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:06,822 DEBUG Processing 528/784 atomic regions from SNP 158309 to 158909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,894 DEBUG Processing 318/598 atomic regions from SNP 95274 to 95874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:06,919 DEBUG Processing 500/786 atomic regions from SNP 149731 to 150331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,953 DEBUG Processing 13/199 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:06,955 DEBUG Processing 427/946 atomic regions from SNP 128011 to 128611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:06,977 DEBUG Processing 380/1054 atomic regions from SNP 113787 to 114387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:07,031 DEBUG Processing 529/784 atomic regions from SNP 158609 to 159209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,099 DEBUG Processing 319/598 atomic regions from SNP 95574 to 96174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:07,145 DEBUG Processing 501/786 atomic regions from SNP 150031 to 150631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,157 DEBUG Processing 14/199 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:07,184 DEBUG Processing 428/946 atomic regions from SNP 128311 to 128911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:07,242 DEBUG Processing 530/784 atomic regions from SNP 158909 to 159509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,251 DEBUG Processing 381/1054 atomic regions from SNP 114087 to 114687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:07,307 DEBUG Processing 320/598 atomic regions from SNP 95874 to 96474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:07,359 DEBUG Processing 15/199 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:07,371 DEBUG Processing 502/786 atomic regions from SNP 150331 to 150931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,411 DEBUG Processing 429/946 atomic regions from SNP 128611 to 129211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:07,453 DEBUG Processing 531/784 atomic regions from SNP 159209 to 159809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,514 DEBUG Processing 321/598 atomic regions from SNP 96174 to 96774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:07,529 DEBUG Processing 382/1054 atomic regions from SNP 114387 to 114987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:07,560 DEBUG Processing 16/199 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:07,582 DEBUG Processing 503/786 atomic regions from SNP 150631 to 151231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,635 DEBUG Processing 430/946 atomic regions from SNP 128911 to 129511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:07,662 DEBUG Processing 532/784 atomic regions from SNP 159509 to 160109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,723 DEBUG Processing 322/598 atomic regions from SNP 96474 to 97074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:07,767 DEBUG Processing 17/199 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:07,799 DEBUG Processing 504/786 atomic regions from SNP 150931 to 151531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,808 DEBUG Processing 383/1054 atomic regions from SNP 114687 to 115287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:07,867 DEBUG Processing 431/946 atomic regions from SNP 129211 to 129811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:07,874 DEBUG Processing 533/784 atomic regions from SNP 159809 to 160409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,934 DEBUG Processing 323/598 atomic regions from SNP 96774 to 97374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:07,970 DEBUG Processing 18/199 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:08,013 DEBUG Processing 505/786 atomic regions from SNP 151231 to 151831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,071 DEBUG Processing 384/1054 atomic regions from SNP 114987 to 115587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:08,085 DEBUG Processing 534/784 atomic regions from SNP 160109 to 160709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,094 DEBUG Processing 432/946 atomic regions from SNP 129511 to 130111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:08,142 DEBUG Processing 324/598 atomic regions from SNP 97074 to 97674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:08,170 DEBUG Processing 19/199 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:08,225 DEBUG Processing 506/786 atomic regions from SNP 151531 to 152131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,294 DEBUG Processing 535/784 atomic regions from SNP 160409 to 161009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,319 DEBUG Processing 385/1054 atomic regions from SNP 115287 to 115887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:08,324 DEBUG Processing 433/946 atomic regions from SNP 129811 to 130411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:08,348 DEBUG Processing 325/598 atomic regions from SNP 97374 to 97974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:08,370 DEBUG Processing 20/199 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:08,453 DEBUG Processing 507/786 atomic regions from SNP 151831 to 152431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,505 DEBUG Processing 536/784 atomic regions from SNP 160709 to 161309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,554 DEBUG Processing 434/946 atomic regions from SNP 130111 to 130711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:08,558 DEBUG Processing 326/598 atomic regions from SNP 97674 to 98274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:08,570 DEBUG Processing 21/199 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:08,598 DEBUG Processing 386/1054 atomic regions from SNP 115587 to 116187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:08,680 DEBUG Processing 508/786 atomic regions from SNP 152131 to 152731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,733 DEBUG Processing 537/784 atomic regions from SNP 161009 to 161609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,773 DEBUG Processing 327/598 atomic regions from SNP 97974 to 98574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:08,775 DEBUG Processing 22/199 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:08,786 DEBUG Processing 435/946 atomic regions from SNP 130411 to 131011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:08,884 DEBUG Processing 387/1054 atomic regions from SNP 115887 to 116487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:08,895 DEBUG Processing 509/786 atomic regions from SNP 152431 to 153031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,958 DEBUG Processing 538/784 atomic regions from SNP 161309 to 161909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,979 DEBUG Processing 23/199 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:08,983 DEBUG Processing 328/598 atomic regions from SNP 98274 to 98874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:09,016 DEBUG Processing 436/946 atomic regions from SNP 130711 to 131311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,105 DEBUG Processing 510/786 atomic regions from SNP 152731 to 153331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,163 DEBUG Processing 388/1054 atomic regions from SNP 116187 to 116787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:09,171 DEBUG Processing 539/784 atomic regions from SNP 161609 to 162209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,184 DEBUG Processing 24/199 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:09,195 DEBUG Processing 329/598 atomic regions from SNP 98574 to 99174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:09,246 DEBUG Processing 437/946 atomic regions from SNP 131011 to 131611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,313 DEBUG Processing 511/786 atomic regions from SNP 153031 to 153631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,384 DEBUG Processing 540/784 atomic regions from SNP 161909 to 162509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,389 DEBUG Processing 25/199 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:09,410 DEBUG Processing 330/598 atomic regions from SNP 98874 to 99474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:09,422 DEBUG Processing 389/1054 atomic regions from SNP 116487 to 117087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:09,478 DEBUG Processing 438/946 atomic regions from SNP 131311 to 131911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,521 DEBUG Processing 512/786 atomic regions from SNP 153331 to 153931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,588 DEBUG Processing 26/199 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:09,594 DEBUG Processing 541/784 atomic regions from SNP 162209 to 162809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,627 DEBUG Processing 331/598 atomic regions from SNP 99174 to 99774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:09,672 DEBUG Processing 390/1054 atomic regions from SNP 116787 to 117387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:09,704 DEBUG Processing 439/946 atomic regions from SNP 131611 to 132211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,733 DEBUG Processing 513/786 atomic regions from SNP 153631 to 154231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,782 DEBUG Processing 27/199 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:09,800 DEBUG Processing 542/784 atomic regions from SNP 162509 to 163109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,832 DEBUG Processing 332/598 atomic regions from SNP 99474 to 100074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:09,922 DEBUG Processing 391/1054 atomic regions from SNP 117087 to 117687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:09,933 DEBUG Processing 440/946 atomic regions from SNP 131911 to 132511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,951 DEBUG Processing 514/786 atomic regions from SNP 153931 to 154531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,979 DEBUG Processing 28/199 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:10,008 DEBUG Processing 543/784 atomic regions from SNP 162809 to 163409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,037 DEBUG Processing 333/598 atomic regions from SNP 99774 to 100374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:10,160 DEBUG Processing 441/946 atomic regions from SNP 132211 to 132811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,163 DEBUG Processing 515/786 atomic regions from SNP 154231 to 154831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,171 DEBUG Processing 392/1054 atomic regions from SNP 117387 to 117987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:10,178 DEBUG Processing 29/199 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:10,216 DEBUG Processing 544/784 atomic regions from SNP 163109 to 163709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,242 DEBUG Processing 334/598 atomic regions from SNP 100074 to 100674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:10,382 DEBUG Processing 30/199 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:10,382 DEBUG Processing 516/786 atomic regions from SNP 154531 to 155131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,391 DEBUG Processing 442/946 atomic regions from SNP 132511 to 133111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,423 DEBUG Processing 393/1054 atomic regions from SNP 117687 to 118287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:10,428 DEBUG Processing 545/784 atomic regions from SNP 163409 to 164009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,450 DEBUG Processing 335/598 atomic regions from SNP 100374 to 100974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:10,582 DEBUG Processing 31/199 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:10,593 DEBUG Processing 517/786 atomic regions from SNP 154831 to 155431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,619 DEBUG Processing 443/946 atomic regions from SNP 132811 to 133411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,640 DEBUG Processing 546/784 atomic regions from SNP 163709 to 164309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,659 DEBUG Processing 336/598 atomic regions from SNP 100674 to 101274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:10,675 DEBUG Processing 394/1054 atomic regions from SNP 117987 to 118587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:10,779 DEBUG Processing 32/199 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:10,803 DEBUG Processing 518/786 atomic regions from SNP 155131 to 155731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,851 DEBUG Processing 444/946 atomic regions from SNP 133111 to 133711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,872 DEBUG Processing 337/598 atomic regions from SNP 100974 to 101574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:10,872 DEBUG Processing 547/784 atomic regions from SNP 164009 to 164609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,926 DEBUG Processing 395/1054 atomic regions from SNP 118287 to 118887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:10,976 DEBUG Processing 33/199 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:11,012 DEBUG Processing 519/786 atomic regions from SNP 155431 to 156031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,083 DEBUG Processing 338/598 atomic regions from SNP 101274 to 101874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:11,083 DEBUG Processing 445/946 atomic regions from SNP 133411 to 134011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,085 DEBUG Processing 548/784 atomic regions from SNP 164309 to 164909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,176 DEBUG Processing 34/199 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:11,178 DEBUG Processing 396/1054 atomic regions from SNP 118587 to 119187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:11,224 DEBUG Processing 520/786 atomic regions from SNP 155731 to 156331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,294 DEBUG Processing 339/598 atomic regions from SNP 101574 to 102174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:11,295 DEBUG Processing 549/784 atomic regions from SNP 164609 to 165209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,314 DEBUG Processing 446/946 atomic regions from SNP 133711 to 134311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,375 DEBUG Processing 35/199 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:11,427 DEBUG Processing 397/1054 atomic regions from SNP 118887 to 119487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:11,436 DEBUG Processing 521/786 atomic regions from SNP 156031 to 156631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,501 DEBUG Processing 340/598 atomic regions from SNP 101874 to 102474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:11,504 DEBUG Processing 550/784 atomic regions from SNP 164909 to 165509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,549 DEBUG Processing 447/946 atomic regions from SNP 134011 to 134611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,574 DEBUG Processing 36/199 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:11,670 DEBUG Processing 522/786 atomic regions from SNP 156331 to 156931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,675 DEBUG Processing 398/1054 atomic regions from SNP 119187 to 119787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:11,707 DEBUG Processing 341/598 atomic regions from SNP 102174 to 102774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:11,714 DEBUG Processing 551/784 atomic regions from SNP 165209 to 165809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,770 DEBUG Processing 37/199 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:11,806 DEBUG Processing 448/946 atomic regions from SNP 134311 to 134911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,903 DEBUG Processing 523/786 atomic regions from SNP 156631 to 157231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,914 DEBUG Processing 342/598 atomic regions from SNP 102474 to 103074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:11,923 DEBUG Processing 552/784 atomic regions from SNP 165509 to 166109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,927 DEBUG Processing 399/1054 atomic regions from SNP 119487 to 120087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:11,967 DEBUG Processing 38/199 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:12,050 DEBUG Processing 449/946 atomic regions from SNP 134611 to 135211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,123 DEBUG Processing 343/598 atomic regions from SNP 102774 to 103374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:12,129 DEBUG Processing 524/786 atomic regions from SNP 156931 to 157531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,136 DEBUG Processing 553/784 atomic regions from SNP 165809 to 166409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,166 DEBUG Processing 39/199 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:12,178 DEBUG Processing 400/1054 atomic regions from SNP 119787 to 120387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:12,276 DEBUG Processing 450/946 atomic regions from SNP 134911 to 135511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,332 DEBUG Processing 344/598 atomic regions from SNP 103074 to 103674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:12,346 DEBUG Processing 554/784 atomic regions from SNP 166109 to 166709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,361 DEBUG Processing 525/786 atomic regions from SNP 157231 to 157831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,369 DEBUG Processing 40/199 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:12,425 DEBUG Processing 401/1054 atomic regions from SNP 120087 to 120687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:12,498 DEBUG Processing 451/946 atomic regions from SNP 135211 to 135811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,540 DEBUG Processing 345/598 atomic regions from SNP 103374 to 103974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:12,558 DEBUG Processing 555/784 atomic regions from SNP 166409 to 167009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,574 DEBUG Processing 41/199 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:12,588 DEBUG Processing 526/786 atomic regions from SNP 157531 to 158131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,672 DEBUG Processing 402/1054 atomic regions from SNP 120387 to 120987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:12,725 DEBUG Processing 452/946 atomic regions from SNP 135511 to 136111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,748 DEBUG Processing 346/598 atomic regions from SNP 103674 to 104274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:12,773 DEBUG Processing 556/784 atomic regions from SNP 166709 to 167309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,781 DEBUG Processing 42/199 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:12,828 DEBUG Processing 527/786 atomic regions from SNP 157831 to 158431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,914 DEBUG Processing 403/1054 atomic regions from SNP 120687 to 121287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:12,952 DEBUG Processing 453/946 atomic regions from SNP 135811 to 136411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,953 DEBUG Processing 347/598 atomic regions from SNP 103974 to 104574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:12,983 DEBUG Processing 43/199 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:12,996 DEBUG Processing 557/784 atomic regions from SNP 167009 to 167609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,069 DEBUG Processing 528/786 atomic regions from SNP 158131 to 158731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,160 DEBUG Processing 348/598 atomic regions from SNP 104274 to 104874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:13,160 DEBUG Processing 404/1054 atomic regions from SNP 120987 to 121587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:13,181 DEBUG Processing 454/946 atomic regions from SNP 136111 to 136711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,183 DEBUG Processing 44/199 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:13,224 DEBUG Processing 558/784 atomic regions from SNP 167309 to 167909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,306 DEBUG Processing 529/786 atomic regions from SNP 158431 to 159031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,370 DEBUG Processing 349/598 atomic regions from SNP 104574 to 105174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:13,383 DEBUG Processing 45/199 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:13,410 DEBUG Processing 405/1054 atomic regions from SNP 121287 to 121887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:13,418 DEBUG Processing 455/946 atomic regions from SNP 136411 to 137011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,452 DEBUG Processing 559/784 atomic regions from SNP 167609 to 168209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,541 DEBUG Processing 530/786 atomic regions from SNP 158731 to 159331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,578 DEBUG Processing 350/598 atomic regions from SNP 104874 to 105474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:13,585 DEBUG Processing 46/199 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:13,650 DEBUG Processing 456/946 atomic regions from SNP 136711 to 137311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,660 DEBUG Processing 560/784 atomic regions from SNP 167909 to 168509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,660 DEBUG Processing 406/1054 atomic regions from SNP 121587 to 122187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:13,766 DEBUG Processing 531/786 atomic regions from SNP 159031 to 159631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,786 DEBUG Processing 351/598 atomic regions from SNP 105174 to 105774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:13,786 DEBUG Processing 47/199 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:13,871 DEBUG Processing 561/784 atomic regions from SNP 168209 to 168809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,882 DEBUG Processing 457/946 atomic regions from SNP 137011 to 137611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,908 DEBUG Processing 407/1054 atomic regions from SNP 121887 to 122487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:13,988 DEBUG Processing 48/199 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:13,993 DEBUG Processing 352/598 atomic regions from SNP 105474 to 106074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:13,994 DEBUG Processing 532/786 atomic regions from SNP 159331 to 159931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,089 DEBUG Processing 562/784 atomic regions from SNP 168509 to 169109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,110 DEBUG Processing 458/946 atomic regions from SNP 137311 to 137911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,151 DEBUG Processing 408/1054 atomic regions from SNP 122187 to 122787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:14,190 DEBUG Processing 49/199 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:14,199 DEBUG Processing 353/598 atomic regions from SNP 105774 to 106374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:14,211 DEBUG Processing 533/786 atomic regions from SNP 159631 to 160231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,304 DEBUG Processing 563/784 atomic regions from SNP 168809 to 169409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,339 DEBUG Processing 459/946 atomic regions from SNP 137611 to 138211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,393 DEBUG Processing 50/199 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:14,398 DEBUG Processing 409/1054 atomic regions from SNP 122487 to 123087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:14,407 DEBUG Processing 354/598 atomic regions from SNP 106074 to 106674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:14,429 DEBUG Processing 534/786 atomic regions from SNP 159931 to 160531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,524 DEBUG Processing 564/784 atomic regions from SNP 169109 to 169709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,566 DEBUG Processing 460/946 atomic regions from SNP 137911 to 138511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,594 DEBUG Processing 51/199 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:14,614 DEBUG Processing 355/598 atomic regions from SNP 106374 to 106974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:14,646 DEBUG Processing 535/786 atomic regions from SNP 160231 to 160831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,649 DEBUG Processing 410/1054 atomic regions from SNP 122787 to 123387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:14,758 DEBUG Processing 565/784 atomic regions from SNP 169409 to 170009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,791 DEBUG Processing 52/199 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:14,792 DEBUG Processing 461/946 atomic regions from SNP 138211 to 138811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,820 DEBUG Processing 356/598 atomic regions from SNP 106674 to 107274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:14,862 DEBUG Processing 536/786 atomic regions from SNP 160531 to 161131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,901 DEBUG Processing 411/1054 atomic regions from SNP 123087 to 123687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:14,986 DEBUG Processing 566/784 atomic regions from SNP 169709 to 170309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,992 DEBUG Processing 53/199 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:15,021 DEBUG Processing 462/946 atomic regions from SNP 138511 to 139111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,027 DEBUG Processing 357/598 atomic regions from SNP 106974 to 107574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:15,078 DEBUG Processing 537/786 atomic regions from SNP 160831 to 161431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,152 DEBUG Processing 412/1054 atomic regions from SNP 123387 to 123987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,191 DEBUG Processing 54/199 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:15,212 DEBUG Processing 567/784 atomic regions from SNP 170009 to 170609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,233 DEBUG Processing 358/598 atomic regions from SNP 107274 to 107874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:15,248 DEBUG Processing 463/946 atomic regions from SNP 138811 to 139411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,292 DEBUG Processing 538/786 atomic regions from SNP 161131 to 161731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,390 DEBUG Processing 55/199 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:15,400 DEBUG Processing 413/1054 atomic regions from SNP 123687 to 124287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,438 DEBUG Processing 568/784 atomic regions from SNP 170309 to 170909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,440 DEBUG Processing 359/598 atomic regions from SNP 107574 to 108174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:15,478 DEBUG Processing 464/946 atomic regions from SNP 139111 to 139711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,502 DEBUG Processing 539/786 atomic regions from SNP 161431 to 162031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,592 DEBUG Processing 56/199 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:15,648 DEBUG Processing 360/598 atomic regions from SNP 107874 to 108474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:15,649 DEBUG Processing 569/784 atomic regions from SNP 170609 to 171209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,651 DEBUG Processing 414/1054 atomic regions from SNP 123987 to 124587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,708 DEBUG Processing 465/946 atomic regions from SNP 139411 to 140011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,712 DEBUG Processing 540/786 atomic regions from SNP 161731 to 162331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,790 DEBUG Processing 57/199 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:15,855 DEBUG Processing 361/598 atomic regions from SNP 108174 to 108774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:15,859 DEBUG Processing 570/784 atomic regions from SNP 170909 to 171509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,901 DEBUG Processing 415/1054 atomic regions from SNP 124287 to 124887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,923 DEBUG Processing 541/786 atomic regions from SNP 162031 to 162631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,938 DEBUG Processing 466/946 atomic regions from SNP 139711 to 140311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,986 DEBUG Processing 58/199 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:16,061 DEBUG Processing 362/598 atomic regions from SNP 108474 to 109074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:16,068 DEBUG Processing 571/784 atomic regions from SNP 171209 to 171809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,135 DEBUG Processing 542/786 atomic regions from SNP 162331 to 162931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,149 DEBUG Processing 416/1054 atomic regions from SNP 124587 to 125187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,166 DEBUG Processing 467/946 atomic regions from SNP 140011 to 140611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,183 DEBUG Processing 59/199 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:16,267 DEBUG Processing 363/598 atomic regions from SNP 108774 to 109374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:16,278 DEBUG Processing 572/784 atomic regions from SNP 171509 to 172109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,350 DEBUG Processing 543/786 atomic regions from SNP 162631 to 163231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,382 DEBUG Processing 60/199 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:16,396 DEBUG Processing 468/946 atomic regions from SNP 140311 to 140911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,402 DEBUG Processing 417/1054 atomic regions from SNP 124887 to 125487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,474 DEBUG Processing 364/598 atomic regions from SNP 109074 to 109674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:16,489 DEBUG Processing 573/784 atomic regions from SNP 171809 to 172409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,570 DEBUG Processing 544/786 atomic regions from SNP 162931 to 163531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,589 DEBUG Processing 61/199 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:16,630 DEBUG Processing 469/946 atomic regions from SNP 140611 to 141211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,658 DEBUG Processing 418/1054 atomic regions from SNP 125187 to 125787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,682 DEBUG Processing 365/598 atomic regions from SNP 109374 to 109974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:16,698 DEBUG Processing 574/784 atomic regions from SNP 172109 to 172709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,784 DEBUG Processing 545/786 atomic regions from SNP 163231 to 163831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,791 DEBUG Processing 62/199 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:16,857 DEBUG Processing 470/946 atomic regions from SNP 140911 to 141511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,885 DEBUG Processing 366/598 atomic regions from SNP 109674 to 110274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:16,903 DEBUG Processing 575/784 atomic regions from SNP 172409 to 173009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,908 DEBUG Processing 419/1054 atomic regions from SNP 125487 to 126087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,989 DEBUG Processing 63/199 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:16,994 DEBUG Processing 546/786 atomic regions from SNP 163531 to 164131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,084 DEBUG Processing 471/946 atomic regions from SNP 141211 to 141811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,106 DEBUG Processing 367/598 atomic regions from SNP 109974 to 110574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:17,109 DEBUG Processing 576/784 atomic regions from SNP 172709 to 173309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,154 DEBUG Processing 420/1054 atomic regions from SNP 125787 to 126387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,187 DEBUG Processing 64/199 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:17,202 DEBUG Processing 547/786 atomic regions from SNP 163831 to 164431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,312 DEBUG Processing 472/946 atomic regions from SNP 141511 to 142111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,316 DEBUG Processing 368/598 atomic regions from SNP 110274 to 110874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:17,318 DEBUG Processing 577/784 atomic regions from SNP 173009 to 173609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,383 DEBUG Processing 65/199 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:17,400 DEBUG Processing 421/1054 atomic regions from SNP 126087 to 126687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,412 DEBUG Processing 548/786 atomic regions from SNP 164131 to 164731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,530 DEBUG Processing 578/784 atomic regions from SNP 173309 to 173909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,541 DEBUG Processing 473/946 atomic regions from SNP 141811 to 142411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,547 DEBUG Processing 369/598 atomic regions from SNP 110574 to 111174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:17,580 DEBUG Processing 66/199 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:17,622 DEBUG Processing 549/786 atomic regions from SNP 164431 to 165031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,645 DEBUG Processing 422/1054 atomic regions from SNP 126387 to 126987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,741 DEBUG Processing 579/784 atomic regions from SNP 173609 to 174209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,755 DEBUG Processing 370/598 atomic regions from SNP 110874 to 111474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:17,770 DEBUG Processing 474/946 atomic regions from SNP 142111 to 142711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,779 DEBUG Processing 67/199 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:17,833 DEBUG Processing 550/786 atomic regions from SNP 164731 to 165331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,891 DEBUG Processing 423/1054 atomic regions from SNP 126687 to 127287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,959 DEBUG Processing 580/784 atomic regions from SNP 173909 to 174509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,972 DEBUG Processing 371/598 atomic regions from SNP 111174 to 111774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:17,976 DEBUG Processing 68/199 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:18,020 DEBUG Processing 475/946 atomic regions from SNP 142411 to 143011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,043 DEBUG Processing 551/786 atomic regions from SNP 165031 to 165631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,136 DEBUG Processing 424/1054 atomic regions from SNP 126987 to 127587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,166 DEBUG Processing 581/784 atomic regions from SNP 174209 to 174809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,172 DEBUG Processing 69/199 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:18,198 DEBUG Processing 372/598 atomic regions from SNP 111474 to 112074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:18,253 DEBUG Processing 552/786 atomic regions from SNP 165331 to 165931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,254 DEBUG Processing 476/946 atomic regions from SNP 142711 to 143311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,371 DEBUG Processing 70/199 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:18,375 DEBUG Processing 582/784 atomic regions from SNP 174509 to 175109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,384 DEBUG Processing 425/1054 atomic regions from SNP 127287 to 127887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,424 DEBUG Processing 373/598 atomic regions from SNP 111774 to 112374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:18,463 DEBUG Processing 553/786 atomic regions from SNP 165631 to 166231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,480 DEBUG Processing 477/946 atomic regions from SNP 143011 to 143611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,568 DEBUG Processing 71/199 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:18,580 DEBUG Processing 583/784 atomic regions from SNP 174809 to 175409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,631 DEBUG Processing 426/1054 atomic regions from SNP 127587 to 128187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,637 DEBUG Processing 374/598 atomic regions from SNP 112074 to 112674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:18,672 DEBUG Processing 554/786 atomic regions from SNP 165931 to 166531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,706 DEBUG Processing 478/946 atomic regions from SNP 143311 to 143911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,766 DEBUG Processing 72/199 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:18,786 DEBUG Processing 584/784 atomic regions from SNP 175109 to 175709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,863 DEBUG Processing 375/598 atomic regions from SNP 112374 to 112974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:18,878 DEBUG Processing 427/1054 atomic regions from SNP 127887 to 128487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,882 DEBUG Processing 555/786 atomic regions from SNP 166231 to 166831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,933 DEBUG Processing 479/946 atomic regions from SNP 143611 to 144211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,964 DEBUG Processing 73/199 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:18,992 DEBUG Processing 585/784 atomic regions from SNP 175409 to 176009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,088 DEBUG Processing 376/598 atomic regions from SNP 112674 to 113274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:19,093 DEBUG Processing 556/786 atomic regions from SNP 166531 to 167131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,124 DEBUG Processing 428/1054 atomic regions from SNP 128187 to 128787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,156 DEBUG Processing 480/946 atomic regions from SNP 143911 to 144511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,160 DEBUG Processing 74/199 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:19,197 DEBUG Processing 586/784 atomic regions from SNP 175709 to 176309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,293 DEBUG Processing 377/598 atomic regions from SNP 112974 to 113574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:19,304 DEBUG Processing 557/786 atomic regions from SNP 166831 to 167431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,360 DEBUG Processing 75/199 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:19,374 DEBUG Processing 429/1054 atomic regions from SNP 128487 to 129087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,397 DEBUG Processing 481/946 atomic regions from SNP 144211 to 144811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,405 DEBUG Processing 587/784 atomic regions from SNP 176009 to 176609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,495 DEBUG Processing 378/598 atomic regions from SNP 113274 to 113874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:19,515 DEBUG Processing 558/786 atomic regions from SNP 167131 to 167731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,562 DEBUG Processing 76/199 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:19,613 DEBUG Processing 588/784 atomic regions from SNP 176309 to 176909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,622 DEBUG Processing 482/946 atomic regions from SNP 144511 to 145111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,627 DEBUG Processing 430/1054 atomic regions from SNP 128787 to 129387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,704 DEBUG Processing 379/598 atomic regions from SNP 113574 to 114174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:19,723 DEBUG Processing 559/786 atomic regions from SNP 167431 to 168031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,762 DEBUG Processing 77/199 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:19,820 DEBUG Processing 589/784 atomic regions from SNP 176609 to 177209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,849 DEBUG Processing 483/946 atomic regions from SNP 144811 to 145411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,875 DEBUG Processing 431/1054 atomic regions from SNP 129087 to 129687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,927 DEBUG Processing 380/598 atomic regions from SNP 113874 to 114474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:19,930 DEBUG Processing 560/786 atomic regions from SNP 167731 to 168331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,958 DEBUG Processing 78/199 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:20,025 DEBUG Processing 590/784 atomic regions from SNP 176909 to 177509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,075 DEBUG Processing 484/946 atomic regions from SNP 145111 to 145711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,120 DEBUG Processing 432/1054 atomic regions from SNP 129387 to 129987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,135 DEBUG Processing 381/598 atomic regions from SNP 114174 to 114774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:20,140 DEBUG Processing 561/786 atomic regions from SNP 168031 to 168631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,154 DEBUG Processing 79/199 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:20,231 DEBUG Processing 591/784 atomic regions from SNP 177209 to 177809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,302 DEBUG Processing 485/946 atomic regions from SNP 145411 to 146011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,340 DEBUG Processing 382/598 atomic regions from SNP 114474 to 115074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:20,353 DEBUG Processing 80/199 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:20,354 DEBUG Processing 562/786 atomic regions from SNP 168331 to 168931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,368 DEBUG Processing 433/1054 atomic regions from SNP 129687 to 130287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,436 DEBUG Processing 592/784 atomic regions from SNP 177509 to 178109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,528 DEBUG Processing 486/946 atomic regions from SNP 145711 to 146311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,544 DEBUG Processing 383/598 atomic regions from SNP 114774 to 115374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:20,555 DEBUG Processing 81/199 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:20,570 DEBUG Processing 563/786 atomic regions from SNP 168631 to 169231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,618 DEBUG Processing 434/1054 atomic regions from SNP 129987 to 130587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,642 DEBUG Processing 593/784 atomic regions from SNP 177809 to 178409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,752 DEBUG Processing 384/598 atomic regions from SNP 115074 to 115674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:20,753 DEBUG Processing 82/199 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:20,756 DEBUG Processing 487/946 atomic regions from SNP 146011 to 146611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,786 DEBUG Processing 564/786 atomic regions from SNP 168931 to 169531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,848 DEBUG Processing 594/784 atomic regions from SNP 178109 to 178709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,868 DEBUG Processing 435/1054 atomic regions from SNP 130287 to 130887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,950 DEBUG Processing 83/199 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:20,958 DEBUG Processing 385/598 atomic regions from SNP 115374 to 115974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:20,984 DEBUG Processing 488/946 atomic regions from SNP 146311 to 146911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,998 DEBUG Processing 565/786 atomic regions from SNP 169231 to 169831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,054 DEBUG Processing 595/784 atomic regions from SNP 178409 to 179009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,114 DEBUG Processing 436/1054 atomic regions from SNP 130587 to 131187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,147 DEBUG Processing 84/199 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:21,165 DEBUG Processing 386/598 atomic regions from SNP 115674 to 116274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:21,208 DEBUG Processing 566/786 atomic regions from SNP 169531 to 170131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,212 DEBUG Processing 489/946 atomic regions from SNP 146611 to 147211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,269 DEBUG Processing 596/784 atomic regions from SNP 178709 to 179309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,346 DEBUG Processing 85/199 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:21,363 DEBUG Processing 437/1054 atomic regions from SNP 130887 to 131487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,390 DEBUG Processing 387/598 atomic regions from SNP 115974 to 116574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:21,419 DEBUG Processing 567/786 atomic regions from SNP 169831 to 170431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,440 DEBUG Processing 490/946 atomic regions from SNP 146911 to 147511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,475 DEBUG Processing 597/784 atomic regions from SNP 179009 to 179609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,543 DEBUG Processing 86/199 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:21,609 DEBUG Processing 438/1054 atomic regions from SNP 131187 to 131787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,622 DEBUG Processing 388/598 atomic regions from SNP 116274 to 116874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:21,646 DEBUG Processing 568/786 atomic regions from SNP 170131 to 170731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,667 DEBUG Processing 491/946 atomic regions from SNP 147211 to 147811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,685 DEBUG Processing 598/784 atomic regions from SNP 179309 to 179909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,739 DEBUG Processing 87/199 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:21,837 DEBUG Processing 389/598 atomic regions from SNP 116574 to 117174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:21,855 DEBUG Processing 439/1054 atomic regions from SNP 131487 to 132087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,872 DEBUG Processing 569/786 atomic regions from SNP 170431 to 171031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,897 DEBUG Processing 492/946 atomic regions from SNP 147511 to 148111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,920 DEBUG Processing 599/784 atomic regions from SNP 179609 to 180209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,934 DEBUG Processing 88/199 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:22,044 DEBUG Processing 390/598 atomic regions from SNP 116874 to 117474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:22,096 DEBUG Processing 570/786 atomic regions from SNP 170731 to 171331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,104 DEBUG Processing 440/1054 atomic regions from SNP 131787 to 132387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,127 DEBUG Processing 493/946 atomic regions from SNP 147811 to 148411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,132 DEBUG Processing 89/199 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:22,132 DEBUG Processing 600/784 atomic regions from SNP 179909 to 180509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,249 DEBUG Processing 391/598 atomic regions from SNP 117174 to 117774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:22,314 DEBUG Processing 571/786 atomic regions from SNP 171031 to 171631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,335 DEBUG Processing 90/199 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:22,344 DEBUG Processing 601/784 atomic regions from SNP 180209 to 180809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,357 DEBUG Processing 441/1054 atomic regions from SNP 132087 to 132687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,360 DEBUG Processing 494/946 atomic regions from SNP 148111 to 148711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,455 DEBUG Processing 392/598 atomic regions from SNP 117474 to 118074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:22,532 DEBUG Processing 572/786 atomic regions from SNP 171331 to 171931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,539 DEBUG Processing 91/199 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:22,556 DEBUG Processing 602/784 atomic regions from SNP 180509 to 181109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,592 DEBUG Processing 495/946 atomic regions from SNP 148411 to 149011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,608 DEBUG Processing 442/1054 atomic regions from SNP 132387 to 132987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,659 DEBUG Processing 393/598 atomic regions from SNP 117774 to 118374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:22,742 DEBUG Processing 92/199 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:22,746 DEBUG Processing 573/786 atomic regions from SNP 171631 to 172231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,783 DEBUG Processing 603/784 atomic regions from SNP 180809 to 181409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,824 DEBUG Processing 496/946 atomic regions from SNP 148711 to 149311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,858 DEBUG Processing 443/1054 atomic regions from SNP 132687 to 133287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,865 DEBUG Processing 394/598 atomic regions from SNP 118074 to 118674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:22,941 DEBUG Processing 93/199 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:22,957 DEBUG Processing 574/786 atomic regions from SNP 171931 to 172531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,993 DEBUG Processing 604/784 atomic regions from SNP 181109 to 181709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,055 DEBUG Processing 497/946 atomic regions from SNP 149011 to 149611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,071 DEBUG Processing 395/598 atomic regions from SNP 118374 to 118974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:23,105 DEBUG Processing 444/1054 atomic regions from SNP 132987 to 133587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,136 DEBUG Processing 94/199 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:23,167 DEBUG Processing 575/786 atomic regions from SNP 172231 to 172831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,206 DEBUG Processing 605/784 atomic regions from SNP 181409 to 182009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,279 DEBUG Processing 396/598 atomic regions from SNP 118674 to 119274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:23,285 DEBUG Processing 498/946 atomic regions from SNP 149311 to 149911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,332 DEBUG Processing 95/199 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:23,351 DEBUG Processing 445/1054 atomic regions from SNP 133287 to 133887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,376 DEBUG Processing 576/786 atomic regions from SNP 172531 to 173131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,420 DEBUG Processing 606/784 atomic regions from SNP 181709 to 182309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,502 DEBUG Processing 397/598 atomic regions from SNP 118974 to 119574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:23,512 DEBUG Processing 499/946 atomic regions from SNP 149611 to 150211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,532 DEBUG Processing 96/199 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:23,586 DEBUG Processing 577/786 atomic regions from SNP 172831 to 173431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,602 DEBUG Processing 446/1054 atomic regions from SNP 133587 to 134187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,645 DEBUG Processing 607/784 atomic regions from SNP 182009 to 182609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,718 DEBUG Processing 398/598 atomic regions from SNP 119274 to 119874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:23,730 DEBUG Processing 97/199 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:23,739 DEBUG Processing 500/946 atomic regions from SNP 149911 to 150511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,798 DEBUG Processing 578/786 atomic regions from SNP 173131 to 173731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,857 DEBUG Processing 608/784 atomic regions from SNP 182309 to 182909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,867 DEBUG Processing 447/1054 atomic regions from SNP 133887 to 134487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,931 DEBUG Processing 399/598 atomic regions from SNP 119574 to 120174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:23,932 DEBUG Processing 98/199 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:23,973 DEBUG Processing 501/946 atomic regions from SNP 150211 to 150811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,011 DEBUG Processing 579/786 atomic regions from SNP 173431 to 174031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,073 DEBUG Processing 609/784 atomic regions from SNP 182609 to 183209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,131 DEBUG Processing 99/199 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:24,139 DEBUG Processing 400/598 atomic regions from SNP 119874 to 120474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:24,150 DEBUG Processing 448/1054 atomic regions from SNP 134187 to 134787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,199 DEBUG Processing 502/946 atomic regions from SNP 150511 to 151111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,220 DEBUG Processing 580/786 atomic regions from SNP 173731 to 174331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,303 DEBUG Processing 610/784 atomic regions from SNP 182909 to 183509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,331 DEBUG Processing 100/199 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:24,348 DEBUG Processing 401/598 atomic regions from SNP 120174 to 120774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:24,414 DEBUG Processing 449/1054 atomic regions from SNP 134487 to 135087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,426 DEBUG Processing 503/946 atomic regions from SNP 150811 to 151411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,430 DEBUG Processing 581/786 atomic regions from SNP 174031 to 174631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,523 DEBUG Processing 611/784 atomic regions from SNP 183209 to 183809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,529 DEBUG Processing 101/199 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:24,560 DEBUG Processing 402/598 atomic regions from SNP 120474 to 121074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:24,646 DEBUG Processing 582/786 atomic regions from SNP 174331 to 174931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,658 DEBUG Processing 504/946 atomic regions from SNP 151111 to 151711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,664 DEBUG Processing 450/1054 atomic regions from SNP 134787 to 135387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,731 DEBUG Processing 102/199 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:24,744 DEBUG Processing 612/784 atomic regions from SNP 183509 to 184109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,771 DEBUG Processing 403/598 atomic regions from SNP 120774 to 121374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:24,861 DEBUG Processing 583/786 atomic regions from SNP 174631 to 175231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,891 DEBUG Processing 505/946 atomic regions from SNP 151411 to 152011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,916 DEBUG Processing 451/1054 atomic regions from SNP 135087 to 135687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,936 DEBUG Processing 103/199 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:24,959 DEBUG Processing 613/784 atomic regions from SNP 183809 to 184409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,983 DEBUG Processing 404/598 atomic regions from SNP 121074 to 121674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:25,071 DEBUG Processing 584/786 atomic regions from SNP 174931 to 175531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,123 DEBUG Processing 506/946 atomic regions from SNP 151711 to 152311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,142 DEBUG Processing 104/199 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:25,171 DEBUG Processing 452/1054 atomic regions from SNP 135387 to 135987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,193 DEBUG Processing 614/784 atomic regions from SNP 184109 to 184709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,194 DEBUG Processing 405/598 atomic regions from SNP 121374 to 121974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:25,280 DEBUG Processing 585/786 atomic regions from SNP 175231 to 175831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,347 DEBUG Processing 105/199 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:25,356 DEBUG Processing 507/946 atomic regions from SNP 152011 to 152611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,407 DEBUG Processing 406/598 atomic regions from SNP 121674 to 122274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:25,423 DEBUG Processing 453/1054 atomic regions from SNP 135687 to 136287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,434 DEBUG Processing 615/784 atomic regions from SNP 184409 to 185009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,490 DEBUG Processing 586/786 atomic regions from SNP 175531 to 176131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,548 DEBUG Processing 106/199 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:25,592 DEBUG Processing 508/946 atomic regions from SNP 152311 to 152911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,623 DEBUG Processing 407/598 atomic regions from SNP 121974 to 122574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:25,651 DEBUG Processing 616/784 atomic regions from SNP 184709 to 185309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,673 DEBUG Processing 454/1054 atomic regions from SNP 135987 to 136587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,705 DEBUG Processing 587/786 atomic regions from SNP 175831 to 176431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,750 DEBUG Processing 107/199 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:25,837 DEBUG Processing 509/946 atomic regions from SNP 152611 to 153211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,847 DEBUG Processing 408/598 atomic regions from SNP 122274 to 122874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:25,873 DEBUG Processing 617/784 atomic regions from SNP 185009 to 185609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,919 DEBUG Processing 588/786 atomic regions from SNP 176131 to 176731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,935 DEBUG Processing 455/1054 atomic regions from SNP 136287 to 136887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,953 DEBUG Processing 108/199 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:26,069 DEBUG Processing 409/598 atomic regions from SNP 122574 to 123174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:26,080 DEBUG Processing 510/946 atomic regions from SNP 152911 to 153511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,097 DEBUG Processing 618/784 atomic regions from SNP 185309 to 185909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,135 DEBUG Processing 589/786 atomic regions from SNP 176431 to 177031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,157 DEBUG Processing 109/199 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:26,190 DEBUG Processing 456/1054 atomic regions from SNP 136587 to 137187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,295 DEBUG Processing 410/598 atomic regions from SNP 122874 to 123474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:26,327 DEBUG Processing 619/784 atomic regions from SNP 185609 to 186209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,331 DEBUG Processing 511/946 atomic regions from SNP 153211 to 153811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,356 DEBUG Processing 590/786 atomic regions from SNP 176731 to 177331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,368 DEBUG Processing 110/199 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:26,452 DEBUG Processing 457/1054 atomic regions from SNP 136887 to 137487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,526 DEBUG Processing 411/598 atomic regions from SNP 123174 to 123774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:26,571 DEBUG Processing 620/784 atomic regions from SNP 185909 to 186509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,581 DEBUG Processing 111/199 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:26,582 DEBUG Processing 591/786 atomic regions from SNP 177031 to 177631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,582 DEBUG Processing 512/946 atomic regions from SNP 153511 to 154111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,716 DEBUG Processing 458/1054 atomic regions from SNP 137187 to 137787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,756 DEBUG Processing 412/598 atomic regions from SNP 123474 to 124074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:26,798 DEBUG Processing 112/199 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:26,815 DEBUG Processing 592/786 atomic regions from SNP 177331 to 177931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,827 DEBUG Processing 621/784 atomic regions from SNP 186209 to 186809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,835 DEBUG Processing 513/946 atomic regions from SNP 153811 to 154411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,979 DEBUG Processing 459/1054 atomic regions from SNP 137487 to 138087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,984 DEBUG Processing 413/598 atomic regions from SNP 123774 to 124374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:27,014 DEBUG Processing 113/199 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:27,049 DEBUG Processing 593/786 atomic regions from SNP 177631 to 178231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,070 DEBUG Processing 622/784 atomic regions from SNP 186509 to 187109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,083 DEBUG Processing 514/946 atomic regions from SNP 154111 to 154711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,206 DEBUG Processing 414/598 atomic regions from SNP 124074 to 124674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:27,229 DEBUG Processing 114/199 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:27,241 DEBUG Processing 460/1054 atomic regions from SNP 137787 to 138387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,281 DEBUG Processing 594/786 atomic regions from SNP 177931 to 178531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,320 DEBUG Processing 623/784 atomic regions from SNP 186809 to 187409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,324 DEBUG Processing 515/946 atomic regions from SNP 154411 to 155011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,428 DEBUG Processing 415/598 atomic regions from SNP 124374 to 124974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:27,440 DEBUG Processing 115/199 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:27,500 DEBUG Processing 461/1054 atomic regions from SNP 138087 to 138687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,519 DEBUG Processing 595/786 atomic regions from SNP 178231 to 178831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,556 DEBUG Processing 624/784 atomic regions from SNP 187109 to 187709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,564 DEBUG Processing 516/946 atomic regions from SNP 154711 to 155311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,643 DEBUG Processing 116/199 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:27,646 DEBUG Processing 416/598 atomic regions from SNP 124674 to 125274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:27,741 DEBUG Processing 596/786 atomic regions from SNP 178531 to 179131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,754 DEBUG Processing 462/1054 atomic regions from SNP 138387 to 138987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,773 DEBUG Processing 625/784 atomic regions from SNP 187409 to 188009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,800 DEBUG Processing 517/946 atomic regions from SNP 155011 to 155611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,847 DEBUG Processing 117/199 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:27,870 DEBUG Processing 417/598 atomic regions from SNP 124974 to 125574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:27,966 DEBUG Processing 597/786 atomic regions from SNP 178831 to 179431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,991 DEBUG Processing 626/784 atomic regions from SNP 187709 to 188309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,019 DEBUG Processing 463/1054 atomic regions from SNP 138687 to 139287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,040 DEBUG Processing 518/946 atomic regions from SNP 155311 to 155911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,064 DEBUG Processing 118/199 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:28,086 DEBUG Processing 418/598 atomic regions from SNP 125274 to 125874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:28,185 DEBUG Processing 598/786 atomic regions from SNP 179131 to 179731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,205 DEBUG Processing 627/784 atomic regions from SNP 188009 to 188609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,268 DEBUG Processing 119/199 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:28,273 DEBUG Processing 464/1054 atomic regions from SNP 138987 to 139587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,278 DEBUG Processing 519/946 atomic regions from SNP 155611 to 156211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,300 DEBUG Processing 419/598 atomic regions from SNP 125574 to 126174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:28,399 DEBUG Processing 599/786 atomic regions from SNP 179431 to 180031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,439 DEBUG Processing 628/784 atomic regions from SNP 188309 to 188909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,469 DEBUG Processing 120/199 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:28,514 DEBUG Processing 420/598 atomic regions from SNP 125874 to 126474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:28,515 DEBUG Processing 520/946 atomic regions from SNP 155911 to 156511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,523 DEBUG Processing 465/1054 atomic regions from SNP 139287 to 139887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,610 DEBUG Processing 600/786 atomic regions from SNP 179731 to 180331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,669 DEBUG Processing 121/199 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:28,676 DEBUG Processing 629/784 atomic regions from SNP 188609 to 189209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,731 DEBUG Processing 421/598 atomic regions from SNP 126174 to 126774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:28,754 DEBUG Processing 521/946 atomic regions from SNP 156211 to 156811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,771 DEBUG Processing 466/1054 atomic regions from SNP 139587 to 140187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,839 DEBUG Processing 601/786 atomic regions from SNP 180031 to 180631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,871 DEBUG Processing 122/199 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:28,895 DEBUG Processing 630/784 atomic regions from SNP 188909 to 189509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,956 DEBUG Processing 422/598 atomic regions from SNP 126474 to 127074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:29,000 DEBUG Processing 522/946 atomic regions from SNP 156511 to 157111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,023 DEBUG Processing 467/1054 atomic regions from SNP 139887 to 140487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,072 DEBUG Processing 602/786 atomic regions from SNP 180331 to 180931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,074 DEBUG Processing 123/199 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:29,113 DEBUG Processing 631/784 atomic regions from SNP 189209 to 189809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,179 DEBUG Processing 423/598 atomic regions from SNP 126774 to 127374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:29,242 DEBUG Processing 523/946 atomic regions from SNP 156811 to 157411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,275 DEBUG Processing 468/1054 atomic regions from SNP 140187 to 140787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,278 DEBUG Processing 124/199 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:29,290 DEBUG Processing 603/786 atomic regions from SNP 180631 to 181231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,327 DEBUG Processing 632/784 atomic regions from SNP 189509 to 190109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,391 DEBUG Processing 424/598 atomic regions from SNP 127074 to 127674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:29,479 DEBUG Processing 524/946 atomic regions from SNP 157111 to 157711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,483 DEBUG Processing 125/199 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:29,509 DEBUG Processing 604/786 atomic regions from SNP 180931 to 181531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,529 DEBUG Processing 469/1054 atomic regions from SNP 140487 to 141087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,545 DEBUG Processing 633/784 atomic regions from SNP 189809 to 190409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,634 DEBUG Processing 425/598 atomic regions from SNP 127374 to 127974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:29,688 DEBUG Processing 126/199 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:29,720 DEBUG Processing 525/946 atomic regions from SNP 157411 to 158011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,728 DEBUG Processing 605/786 atomic regions from SNP 181231 to 181831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,768 DEBUG Processing 634/784 atomic regions from SNP 190109 to 190709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,783 DEBUG Processing 470/1054 atomic regions from SNP 140787 to 141387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,875 DEBUG Processing 426/598 atomic regions from SNP 127674 to 128274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:29,891 DEBUG Processing 127/199 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:29,951 DEBUG Processing 606/786 atomic regions from SNP 181531 to 182131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,964 DEBUG Processing 526/946 atomic regions from SNP 157711 to 158311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,993 DEBUG Processing 635/784 atomic regions from SNP 190409 to 191009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,055 DEBUG Processing 471/1054 atomic regions from SNP 141087 to 141687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,097 DEBUG Processing 128/199 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:30,098 DEBUG Processing 427/598 atomic regions from SNP 127974 to 128574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:30,171 DEBUG Processing 607/786 atomic regions from SNP 181831 to 182431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,210 DEBUG Processing 527/946 atomic regions from SNP 158011 to 158611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,220 DEBUG Processing 636/784 atomic regions from SNP 190709 to 191309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,306 DEBUG Processing 129/199 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:30,317 DEBUG Processing 472/1054 atomic regions from SNP 141387 to 141987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,319 DEBUG Processing 428/598 atomic regions from SNP 128274 to 128874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:30,394 DEBUG Processing 608/786 atomic regions from SNP 182131 to 182731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,446 DEBUG Processing 637/784 atomic regions from SNP 191009 to 191609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,454 DEBUG Processing 528/946 atomic regions from SNP 158311 to 158911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,515 DEBUG Processing 130/199 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:30,539 DEBUG Processing 429/598 atomic regions from SNP 128574 to 129174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:30,574 DEBUG Processing 473/1054 atomic regions from SNP 141687 to 142287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,617 DEBUG Processing 609/786 atomic regions from SNP 182431 to 183031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,672 DEBUG Processing 638/784 atomic regions from SNP 191309 to 191909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,701 DEBUG Processing 529/946 atomic regions from SNP 158611 to 159211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,723 DEBUG Processing 131/199 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:30,761 DEBUG Processing 430/598 atomic regions from SNP 128874 to 129474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:30,829 DEBUG Processing 474/1054 atomic regions from SNP 141987 to 142587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,836 DEBUG Processing 610/786 atomic regions from SNP 182731 to 183331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,898 DEBUG Processing 639/784 atomic regions from SNP 191609 to 192209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,930 DEBUG Processing 132/199 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:30,949 DEBUG Processing 530/946 atomic regions from SNP 158911 to 159511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,988 DEBUG Processing 431/598 atomic regions from SNP 129174 to 129774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:31,057 DEBUG Processing 611/786 atomic regions from SNP 183031 to 183631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,083 DEBUG Processing 475/1054 atomic regions from SNP 142287 to 142887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,123 DEBUG Processing 640/784 atomic regions from SNP 191909 to 192509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,138 DEBUG Processing 133/199 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:31,193 DEBUG Processing 531/946 atomic regions from SNP 159211 to 159811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,207 DEBUG Processing 432/598 atomic regions from SNP 129474 to 130074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:31,282 DEBUG Processing 612/786 atomic regions from SNP 183331 to 183931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,345 DEBUG Processing 641/784 atomic regions from SNP 192209 to 192809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,348 DEBUG Processing 476/1054 atomic regions from SNP 142587 to 143187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,351 DEBUG Processing 134/199 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:31,428 DEBUG Processing 433/598 atomic regions from SNP 129774 to 130374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:31,436 DEBUG Processing 532/946 atomic regions from SNP 159511 to 160111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,509 DEBUG Processing 613/786 atomic regions from SNP 183631 to 184231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,566 DEBUG Processing 135/199 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:31,570 DEBUG Processing 642/784 atomic regions from SNP 192509 to 193109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,613 DEBUG Processing 477/1054 atomic regions from SNP 142887 to 143487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,647 DEBUG Processing 434/598 atomic regions from SNP 130074 to 130674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:31,677 DEBUG Processing 533/946 atomic regions from SNP 159811 to 160411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,731 DEBUG Processing 614/786 atomic regions from SNP 183931 to 184531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,779 DEBUG Processing 136/199 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:31,796 DEBUG Processing 643/784 atomic regions from SNP 192809 to 193409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,867 DEBUG Processing 435/598 atomic regions from SNP 130374 to 130974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:31,894 DEBUG Processing 478/1054 atomic regions from SNP 143187 to 143787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,917 DEBUG Processing 534/946 atomic regions from SNP 160111 to 160711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,955 DEBUG Processing 615/786 atomic regions from SNP 184231 to 184831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,987 DEBUG Processing 137/199 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:32,019 DEBUG Processing 644/784 atomic regions from SNP 193109 to 193709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,088 DEBUG Processing 436/598 atomic regions from SNP 130674 to 131274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:32,157 DEBUG Processing 535/946 atomic regions from SNP 160411 to 161011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,173 DEBUG Processing 479/1054 atomic regions from SNP 143487 to 144087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,181 DEBUG Processing 616/786 atomic regions from SNP 184531 to 185131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,198 DEBUG Processing 138/199 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:32,237 DEBUG Processing 645/784 atomic regions from SNP 193409 to 194009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,301 DEBUG Processing 437/598 atomic regions from SNP 130974 to 131574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:32,398 DEBUG Processing 536/946 atomic regions from SNP 160711 to 161311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,406 DEBUG Processing 617/786 atomic regions from SNP 184831 to 185431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,415 DEBUG Processing 139/199 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:32,447 DEBUG Processing 480/1054 atomic regions from SNP 143787 to 144387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,458 DEBUG Processing 646/784 atomic regions from SNP 193709 to 194309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,514 DEBUG Processing 438/598 atomic regions from SNP 131274 to 131874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:32,628 DEBUG Processing 140/199 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:32,633 DEBUG Processing 618/786 atomic regions from SNP 185131 to 185731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,638 DEBUG Processing 537/946 atomic regions from SNP 161011 to 161611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,680 DEBUG Processing 647/784 atomic regions from SNP 194009 to 194609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,710 DEBUG Processing 481/1054 atomic regions from SNP 144087 to 144687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,729 DEBUG Processing 439/598 atomic regions from SNP 131574 to 132174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:32,838 DEBUG Processing 141/199 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:32,862 DEBUG Processing 619/786 atomic regions from SNP 185431 to 186031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,888 DEBUG Processing 538/946 atomic regions from SNP 161311 to 161911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,907 DEBUG Processing 648/784 atomic regions from SNP 194309 to 194909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,945 DEBUG Processing 440/598 atomic regions from SNP 131874 to 132474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:32,969 DEBUG Processing 482/1054 atomic regions from SNP 144387 to 144987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,045 DEBUG Processing 142/199 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:33,086 DEBUG Processing 620/786 atomic regions from SNP 185731 to 186331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,134 DEBUG Processing 539/946 atomic regions from SNP 161611 to 162211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,135 DEBUG Processing 649/784 atomic regions from SNP 194609 to 195209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,164 DEBUG Processing 441/598 atomic regions from SNP 132174 to 132774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:33,219 DEBUG Processing 483/1054 atomic regions from SNP 144687 to 145287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,245 DEBUG Processing 143/199 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:33,304 DEBUG Processing 621/786 atomic regions from SNP 186031 to 186631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,358 DEBUG Processing 650/784 atomic regions from SNP 194909 to 195509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,379 DEBUG Processing 540/946 atomic regions from SNP 161911 to 162511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,383 DEBUG Processing 442/598 atomic regions from SNP 132474 to 133074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:33,448 DEBUG Processing 144/199 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:33,471 DEBUG Processing 484/1054 atomic regions from SNP 144987 to 145587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,520 DEBUG Processing 622/786 atomic regions from SNP 186331 to 186931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,579 DEBUG Processing 651/784 atomic regions from SNP 195209 to 195809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,603 DEBUG Processing 443/598 atomic regions from SNP 132774 to 133374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:33,619 DEBUG Processing 541/946 atomic regions from SNP 162211 to 162811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,650 DEBUG Processing 145/199 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:33,726 DEBUG Processing 485/1054 atomic regions from SNP 145287 to 145887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,744 DEBUG Processing 623/786 atomic regions from SNP 186631 to 187231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,801 DEBUG Processing 652/784 atomic regions from SNP 195509 to 196109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,827 DEBUG Processing 444/598 atomic regions from SNP 133074 to 133674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:33,856 DEBUG Processing 146/199 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:33,860 DEBUG Processing 542/946 atomic regions from SNP 162511 to 163111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,968 DEBUG Processing 624/786 atomic regions from SNP 186931 to 187531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,986 DEBUG Processing 486/1054 atomic regions from SNP 145587 to 146187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,021 DEBUG Processing 653/784 atomic regions from SNP 195809 to 196409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,055 DEBUG Processing 147/199 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:34,057 DEBUG Processing 445/598 atomic regions from SNP 133374 to 133974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:34,098 DEBUG Processing 543/946 atomic regions from SNP 162811 to 163411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,192 DEBUG Processing 625/786 atomic regions from SNP 187231 to 187831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,249 DEBUG Processing 654/784 atomic regions from SNP 196109 to 196709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,250 DEBUG Processing 487/1054 atomic regions from SNP 145887 to 146487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,260 DEBUG Processing 148/199 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:34,279 DEBUG Processing 446/598 atomic regions from SNP 133674 to 134274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:34,335 DEBUG Processing 544/946 atomic regions from SNP 163111 to 163711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,417 DEBUG Processing 626/786 atomic regions from SNP 187531 to 188131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,470 DEBUG Processing 149/199 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:34,501 DEBUG Processing 655/784 atomic regions from SNP 196409 to 197009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,518 DEBUG Processing 447/598 atomic regions from SNP 133974 to 134574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:34,528 DEBUG Processing 488/1054 atomic regions from SNP 146187 to 146787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,642 DEBUG Processing 627/786 atomic regions from SNP 187831 to 188431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,645 DEBUG Processing 545/946 atomic regions from SNP 163411 to 164011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,683 DEBUG Processing 150/199 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:34,740 DEBUG Processing 448/598 atomic regions from SNP 134274 to 134874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:34,748 DEBUG Processing 656/784 atomic regions from SNP 196709 to 197309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,789 DEBUG Processing 489/1054 atomic regions from SNP 146487 to 147087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,864 DEBUG Processing 628/786 atomic regions from SNP 188131 to 188731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,886 DEBUG Processing 546/946 atomic regions from SNP 163711 to 164311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,896 DEBUG Processing 151/199 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:34,960 DEBUG Processing 449/598 atomic regions from SNP 134574 to 135174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:34,982 DEBUG Processing 657/784 atomic regions from SNP 197009 to 197609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,050 DEBUG Processing 490/1054 atomic regions from SNP 146787 to 147387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,086 DEBUG Processing 629/786 atomic regions from SNP 188431 to 189031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,108 DEBUG Processing 152/199 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:35,128 DEBUG Processing 547/946 atomic regions from SNP 164011 to 164611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,181 DEBUG Processing 450/598 atomic regions from SNP 134874 to 135474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:35,206 DEBUG Processing 658/784 atomic regions from SNP 197309 to 197909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,312 DEBUG Processing 630/786 atomic regions from SNP 188731 to 189331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,315 DEBUG Processing 491/1054 atomic regions from SNP 147087 to 147687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,321 DEBUG Processing 153/199 atomic regions from SNP 45752 to 46353 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:35,372 DEBUG Processing 548/946 atomic regions from SNP 164311 to 164911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,400 DEBUG Processing 451/598 atomic regions from SNP 135174 to 135774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:35,429 DEBUG Processing 659/784 atomic regions from SNP 197609 to 198209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,536 DEBUG Processing 154/199 atomic regions from SNP 46053 to 46654 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:35,555 DEBUG Processing 631/786 atomic regions from SNP 189031 to 189631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,600 DEBUG Processing 492/1054 atomic regions from SNP 147387 to 147987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,624 DEBUG Processing 549/946 atomic regions from SNP 164611 to 165211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,627 DEBUG Processing 452/598 atomic regions from SNP 135474 to 136074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:35,655 DEBUG Processing 660/784 atomic regions from SNP 197909 to 198509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,748 DEBUG Processing 155/199 atomic regions from SNP 46354 to 46955 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:35,793 DEBUG Processing 632/786 atomic regions from SNP 189331 to 189931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,856 DEBUG Processing 453/598 atomic regions from SNP 135774 to 136374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:35,874 DEBUG Processing 550/946 atomic regions from SNP 164911 to 165511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,883 DEBUG Processing 661/784 atomic regions from SNP 198209 to 198809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,902 DEBUG Processing 493/1054 atomic regions from SNP 147687 to 148287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,961 DEBUG Processing 156/199 atomic regions from SNP 46655 to 47256 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:36,039 DEBUG Processing 633/786 atomic regions from SNP 189631 to 190231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,087 DEBUG Processing 454/598 atomic regions from SNP 136074 to 136674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:36,119 DEBUG Processing 662/784 atomic regions from SNP 198509 to 199109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,129 DEBUG Processing 551/946 atomic regions from SNP 165211 to 165811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,190 DEBUG Processing 157/199 atomic regions from SNP 46956 to 47557 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:36,203 DEBUG Processing 494/1054 atomic regions from SNP 147987 to 148587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:36,290 DEBUG Processing 634/786 atomic regions from SNP 189931 to 190531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,320 DEBUG Processing 455/598 atomic regions from SNP 136374 to 136974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:36,359 DEBUG Processing 663/784 atomic regions from SNP 198809 to 199409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,389 DEBUG Processing 552/946 atomic regions from SNP 165511 to 166111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,425 DEBUG Processing 158/199 atomic regions from SNP 47257 to 47858 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:36,493 DEBUG Processing 495/1054 atomic regions from SNP 148287 to 148887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:36,539 DEBUG Processing 635/786 atomic regions from SNP 190231 to 190831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,559 DEBUG Processing 456/598 atomic regions from SNP 136674 to 137274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:36,600 DEBUG Processing 664/784 atomic regions from SNP 199109 to 199709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,653 DEBUG Processing 553/946 atomic regions from SNP 165811 to 166411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,654 DEBUG Processing 159/199 atomic regions from SNP 47558 to 48159 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:36,782 DEBUG Processing 496/1054 atomic regions from SNP 148587 to 149187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:36,791 DEBUG Processing 636/786 atomic regions from SNP 190531 to 191131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,799 DEBUG Processing 457/598 atomic regions from SNP 136974 to 137574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:36,843 DEBUG Processing 665/784 atomic regions from SNP 199409 to 200009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,879 DEBUG Processing 160/199 atomic regions from SNP 47859 to 48460 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:36,915 DEBUG Processing 554/946 atomic regions from SNP 166111 to 166711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,039 DEBUG Processing 458/598 atomic regions from SNP 137274 to 137874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:37,051 DEBUG Processing 637/786 atomic regions from SNP 190831 to 191431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,074 DEBUG Processing 497/1054 atomic regions from SNP 148887 to 149487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,085 DEBUG Processing 666/784 atomic regions from SNP 199709 to 200309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,108 DEBUG Processing 161/199 atomic regions from SNP 48160 to 48761 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:37,185 DEBUG Processing 555/946 atomic regions from SNP 166411 to 167011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,417 DEBUG Processing 638/786 atomic regions from SNP 191131 to 191731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,420 DEBUG Processing 459/598 atomic regions from SNP 137574 to 138174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:37,442 DEBUG Processing 162/199 atomic regions from SNP 48461 to 49062 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:37,454 DEBUG Processing 667/784 atomic regions from SNP 200009 to 200609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,482 DEBUG Processing 498/1054 atomic regions from SNP 149187 to 149787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,497 DEBUG Processing 556/946 atomic regions from SNP 166711 to 167311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,665 DEBUG Processing 639/786 atomic regions from SNP 191431 to 192031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,676 DEBUG Processing 460/598 atomic regions from SNP 137874 to 138474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:37,682 DEBUG Processing 163/199 atomic regions from SNP 48762 to 49363 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:37,707 DEBUG Processing 668/784 atomic regions from SNP 200309 to 200909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,764 DEBUG Processing 499/1054 atomic regions from SNP 149487 to 150087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,766 DEBUG Processing 557/946 atomic regions from SNP 167011 to 167611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,899 DEBUG Processing 640/786 atomic regions from SNP 191731 to 192331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,901 DEBUG Processing 164/199 atomic regions from SNP 49063 to 49664 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:37,917 DEBUG Processing 461/598 atomic regions from SNP 138174 to 138774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:37,945 DEBUG Processing 669/784 atomic regions from SNP 200609 to 201209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,019 DEBUG Processing 558/946 atomic regions from SNP 167311 to 167911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,028 DEBUG Processing 500/1054 atomic regions from SNP 149787 to 150387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,122 DEBUG Processing 165/199 atomic regions from SNP 49364 to 49965 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:38,134 DEBUG Processing 641/786 atomic regions from SNP 192031 to 192631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,175 DEBUG Processing 462/598 atomic regions from SNP 138474 to 139074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:38,185 DEBUG Processing 670/784 atomic regions from SNP 200909 to 201509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,266 DEBUG Processing 559/946 atomic regions from SNP 167611 to 168211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,293 DEBUG Processing 501/1054 atomic regions from SNP 150087 to 150687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,337 DEBUG Processing 166/199 atomic regions from SNP 49665 to 50266 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:38,364 DEBUG Processing 642/786 atomic regions from SNP 192331 to 192931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,418 DEBUG Processing 671/784 atomic regions from SNP 201209 to 201809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,435 DEBUG Processing 463/598 atomic regions from SNP 138774 to 139374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:38,508 DEBUG Processing 560/946 atomic regions from SNP 167911 to 168511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,550 DEBUG Processing 167/199 atomic regions from SNP 49966 to 50567 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:38,553 DEBUG Processing 502/1054 atomic regions from SNP 150387 to 150987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,608 DEBUG Processing 643/786 atomic regions from SNP 192631 to 193231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,644 DEBUG Processing 672/784 atomic regions from SNP 201509 to 202109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,683 DEBUG Processing 464/598 atomic regions from SNP 139074 to 139674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:38,750 DEBUG Processing 561/946 atomic regions from SNP 168211 to 168811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,761 DEBUG Processing 168/199 atomic regions from SNP 50267 to 50868 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:38,812 DEBUG Processing 503/1054 atomic regions from SNP 150687 to 151287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,837 DEBUG Processing 644/786 atomic regions from SNP 192931 to 193531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,867 DEBUG Processing 673/784 atomic regions from SNP 201809 to 202409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,929 DEBUG Processing 465/598 atomic regions from SNP 139374 to 139974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:38,970 DEBUG Processing 169/199 atomic regions from SNP 50568 to 51169 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:38,993 DEBUG Processing 562/946 atomic regions from SNP 168511 to 169111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,071 DEBUG Processing 645/786 atomic regions from SNP 193231 to 193831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,075 DEBUG Processing 504/1054 atomic regions from SNP 150987 to 151587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,087 DEBUG Processing 674/784 atomic regions from SNP 202109 to 202709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,152 DEBUG Processing 466/598 atomic regions from SNP 139674 to 140274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:39,183 DEBUG Processing 170/199 atomic regions from SNP 50869 to 51470 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:39,237 DEBUG Processing 563/946 atomic regions from SNP 168811 to 169411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,315 DEBUG Processing 675/784 atomic regions from SNP 202409 to 203009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,316 DEBUG Processing 646/786 atomic regions from SNP 193531 to 194131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,352 DEBUG Processing 505/1054 atomic regions from SNP 151287 to 151887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,388 DEBUG Processing 467/598 atomic regions from SNP 139974 to 140574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:39,403 DEBUG Processing 171/199 atomic regions from SNP 51170 to 51771 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:39,480 DEBUG Processing 564/946 atomic regions from SNP 169111 to 169711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,542 DEBUG Processing 676/784 atomic regions from SNP 202709 to 203309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,549 DEBUG Processing 647/786 atomic regions from SNP 193831 to 194431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,615 DEBUG Processing 468/598 atomic regions from SNP 140274 to 140874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:39,617 DEBUG Processing 172/199 atomic regions from SNP 51471 to 52072 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:39,620 DEBUG Processing 506/1054 atomic regions from SNP 151587 to 152187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,722 DEBUG Processing 565/946 atomic regions from SNP 169411 to 170011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,770 DEBUG Processing 677/784 atomic regions from SNP 203009 to 203609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,776 DEBUG Processing 648/786 atomic regions from SNP 194131 to 194731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,829 DEBUG Processing 173/199 atomic regions from SNP 51772 to 52373 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:39,855 DEBUG Processing 469/598 atomic regions from SNP 140574 to 141174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:39,886 DEBUG Processing 507/1054 atomic regions from SNP 151887 to 152487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,964 DEBUG Processing 566/946 atomic regions from SNP 169711 to 170311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,993 DEBUG Processing 678/784 atomic regions from SNP 203309 to 203909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,005 DEBUG Processing 649/786 atomic regions from SNP 194431 to 195031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,045 DEBUG Processing 174/199 atomic regions from SNP 52073 to 52673 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:40,092 DEBUG Processing 470/598 atomic regions from SNP 140874 to 141474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:40,151 DEBUG Processing 508/1054 atomic regions from SNP 152187 to 152787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,226 DEBUG Processing 567/946 atomic regions from SNP 170011 to 170611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,236 DEBUG Processing 679/784 atomic regions from SNP 203609 to 204209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,263 DEBUG Processing 650/786 atomic regions from SNP 194731 to 195331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,276 DEBUG Processing 175/199 atomic regions from SNP 52373 to 52973 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:40,338 DEBUG Processing 471/598 atomic regions from SNP 141174 to 141774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:40,458 DEBUG Processing 509/1054 atomic regions from SNP 152487 to 153087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,536 DEBUG Processing 568/946 atomic regions from SNP 170311 to 170911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,550 DEBUG Processing 680/784 atomic regions from SNP 203909 to 204509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,619 DEBUG Processing 176/199 atomic regions from SNP 52673 to 53273 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:40,630 DEBUG Processing 651/786 atomic regions from SNP 195031 to 195631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,674 DEBUG Processing 472/598 atomic regions from SNP 141474 to 142074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:40,757 DEBUG Processing 510/1054 atomic regions from SNP 152787 to 153387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,853 DEBUG Processing 569/946 atomic regions from SNP 170611 to 171211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,854 DEBUG Processing 681/784 atomic regions from SNP 204209 to 204809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,937 DEBUG Processing 177/199 atomic regions from SNP 52973 to 53573 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:40,957 DEBUG Processing 652/786 atomic regions from SNP 195331 to 195931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,967 DEBUG Processing 473/598 atomic regions from SNP 141774 to 142374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:41,100 DEBUG Processing 511/1054 atomic regions from SNP 153087 to 153687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,198 DEBUG Processing 682/784 atomic regions from SNP 204509 to 205109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,224 DEBUG Processing 570/946 atomic regions from SNP 170911 to 171511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,296 DEBUG Processing 178/199 atomic regions from SNP 53273 to 53873 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:41,317 DEBUG Processing 653/786 atomic regions from SNP 195631 to 196231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,321 DEBUG Processing 474/598 atomic regions from SNP 142074 to 142674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:41,432 DEBUG Processing 512/1054 atomic regions from SNP 153387 to 153987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,572 DEBUG Processing 683/784 atomic regions from SNP 204809 to 205409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,600 DEBUG Processing 571/946 atomic regions from SNP 171211 to 171811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,667 DEBUG Processing 179/199 atomic regions from SNP 53573 to 54173 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:41,706 DEBUG Processing 654/786 atomic regions from SNP 195931 to 196531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,723 DEBUG Processing 475/598 atomic regions from SNP 142374 to 142974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:41,791 DEBUG Processing 513/1054 atomic regions from SNP 153687 to 154287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,856 DEBUG Processing 684/784 atomic regions from SNP 205109 to 205709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,930 DEBUG Processing 572/946 atomic regions from SNP 171511 to 172111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,020 DEBUG Processing 180/199 atomic regions from SNP 53873 to 54473 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:42,104 DEBUG Processing 655/786 atomic regions from SNP 196231 to 196831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,122 DEBUG Processing 476/598 atomic regions from SNP 142674 to 143274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:42,169 DEBUG Processing 685/784 atomic regions from SNP 205409 to 206009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,188 DEBUG Processing 514/1054 atomic regions from SNP 153987 to 154587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,219 DEBUG Processing 573/946 atomic regions from SNP 171811 to 172411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,250 DEBUG Processing 181/199 atomic regions from SNP 54173 to 54773 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:42,417 DEBUG Processing 656/786 atomic regions from SNP 196531 to 197131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,477 DEBUG Processing 477/598 atomic regions from SNP 142974 to 143574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:42,532 DEBUG Processing 686/784 atomic regions from SNP 205709 to 206309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,554 DEBUG Processing 182/199 atomic regions from SNP 54473 to 55073 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:42,569 DEBUG Processing 515/1054 atomic regions from SNP 154287 to 154887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,572 DEBUG Processing 574/946 atomic regions from SNP 172111 to 172711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,731 DEBUG Processing 657/786 atomic regions from SNP 196831 to 197431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,807 DEBUG Processing 478/598 atomic regions from SNP 143274 to 143874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:42,830 DEBUG Processing 183/199 atomic regions from SNP 54773 to 55373 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:42,832 DEBUG Processing 687/784 atomic regions from SNP 206009 to 206609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,864 DEBUG Processing 575/946 atomic regions from SNP 172411 to 173011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,872 DEBUG Processing 516/1054 atomic regions from SNP 154587 to 155187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,965 DEBUG Processing 658/786 atomic regions from SNP 197131 to 197731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,136 DEBUG Processing 479/598 atomic regions from SNP 143574 to 144174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:43,143 DEBUG Processing 184/199 atomic regions from SNP 55073 to 55673 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:43,164 DEBUG Processing 688/784 atomic regions from SNP 206309 to 206909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,206 DEBUG Processing 576/946 atomic regions from SNP 172711 to 173311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,230 DEBUG Processing 659/786 atomic regions from SNP 197431 to 198031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,235 DEBUG Processing 517/1054 atomic regions from SNP 154887 to 155487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,359 DEBUG Processing 185/199 atomic regions from SNP 55373 to 55973 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:43,381 DEBUG Processing 480/598 atomic regions from SNP 143874 to 144474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:43,392 DEBUG Processing 689/784 atomic regions from SNP 206609 to 207209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,458 DEBUG Processing 577/946 atomic regions from SNP 173011 to 173611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,480 DEBUG Processing 660/786 atomic regions from SNP 197731 to 198331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,519 DEBUG Processing 518/1054 atomic regions from SNP 155187 to 155787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,574 DEBUG Processing 186/199 atomic regions from SNP 55673 to 56273 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:43,598 DEBUG Processing 481/598 atomic regions from SNP 144174 to 144774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:43,613 DEBUG Processing 690/784 atomic regions from SNP 206909 to 207509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,702 DEBUG Processing 578/946 atomic regions from SNP 173311 to 173911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,716 DEBUG Processing 661/786 atomic regions from SNP 198031 to 198631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,790 DEBUG Processing 519/1054 atomic regions from SNP 155487 to 156087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,791 DEBUG Processing 187/199 atomic regions from SNP 55973 to 56573 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:43,829 DEBUG Processing 482/598 atomic regions from SNP 144474 to 145074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:43,846 DEBUG Processing 691/784 atomic regions from SNP 207209 to 207809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,951 DEBUG Processing 579/946 atomic regions from SNP 173611 to 174211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,954 DEBUG Processing 662/786 atomic regions from SNP 198331 to 198931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,022 DEBUG Processing 188/199 atomic regions from SNP 56273 to 56873 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:44,068 DEBUG Processing 520/1054 atomic regions from SNP 155787 to 156387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,085 DEBUG Processing 483/598 atomic regions from SNP 144774 to 145374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:44,135 DEBUG Processing 692/784 atomic regions from SNP 207509 to 208109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,296 DEBUG Processing 663/786 atomic regions from SNP 198631 to 199231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,298 DEBUG Processing 580/946 atomic regions from SNP 173911 to 174511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,370 DEBUG Processing 189/199 atomic regions from SNP 56573 to 57173 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:44,461 DEBUG Processing 484/598 atomic regions from SNP 145074 to 145674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:44,472 DEBUG Processing 521/1054 atomic regions from SNP 156087 to 156687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,483 DEBUG Processing 693/784 atomic regions from SNP 207809 to 208409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,546 DEBUG Processing 664/786 atomic regions from SNP 198931 to 199531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,561 DEBUG Processing 581/946 atomic regions from SNP 174211 to 174811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,607 DEBUG Processing 190/199 atomic regions from SNP 56873 to 57473 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:44,700 DEBUG Processing 485/598 atomic regions from SNP 145374 to 145974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:44,721 DEBUG Processing 694/784 atomic regions from SNP 208109 to 208709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,752 DEBUG Processing 522/1054 atomic regions from SNP 156387 to 156987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,784 DEBUG Processing 665/786 atomic regions from SNP 199231 to 199831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,808 DEBUG Processing 582/946 atomic regions from SNP 174511 to 175111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,828 DEBUG Processing 191/199 atomic regions from SNP 57173 to 57773 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:44,947 DEBUG Processing 695/784 atomic regions from SNP 208409 to 209009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,947 DEBUG Processing 486/598 atomic regions from SNP 145674 to 146274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,031 DEBUG Processing 666/786 atomic regions from SNP 199531 to 200131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,031 DEBUG Processing 523/1054 atomic regions from SNP 156687 to 157287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,051 DEBUG Processing 583/946 atomic regions from SNP 174811 to 175411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,053 DEBUG Processing 192/199 atomic regions from SNP 57473 to 58073 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:45,177 DEBUG Processing 696/784 atomic regions from SNP 208709 to 209309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,189 DEBUG Processing 487/598 atomic regions from SNP 145974 to 146574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,282 DEBUG Processing 667/786 atomic regions from SNP 199831 to 200431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,293 DEBUG Processing 193/199 atomic regions from SNP 57773 to 58373 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:45,314 DEBUG Processing 584/946 atomic regions from SNP 175111 to 175711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,318 DEBUG Processing 524/1054 atomic regions from SNP 156987 to 157587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,517 DEBUG Processing 697/784 atomic regions from SNP 209009 to 209609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,543 DEBUG Processing 488/598 atomic regions from SNP 146274 to 146874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,610 DEBUG Processing 194/199 atomic regions from SNP 58073 to 58673 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:45,617 DEBUG Processing 668/786 atomic regions from SNP 200131 to 200731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,643 DEBUG Processing 585/946 atomic regions from SNP 175411 to 176011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,672 DEBUG Processing 525/1054 atomic regions from SNP 157287 to 157887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,763 DEBUG Processing 698/784 atomic regions from SNP 209309 to 209909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,797 DEBUG Processing 489/598 atomic regions from SNP 146574 to 147174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,848 DEBUG Processing 195/199 atomic regions from SNP 58373 to 58973 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:45,869 DEBUG Processing 669/786 atomic regions from SNP 200431 to 201031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,898 DEBUG Processing 586/946 atomic regions from SNP 175711 to 176311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,962 DEBUG Processing 526/1054 atomic regions from SNP 157587 to 158187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,005 DEBUG Processing 699/784 atomic regions from SNP 209609 to 210209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,025 DEBUG Processing 490/598 atomic regions from SNP 146874 to 147474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,065 DEBUG Processing 196/199 atomic regions from SNP 58673 to 59273 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:46,107 DEBUG Processing 670/786 atomic regions from SNP 200731 to 201331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,145 DEBUG Processing 587/946 atomic regions from SNP 176011 to 176611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,235 DEBUG Processing 527/1054 atomic regions from SNP 157887 to 158487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,295 DEBUG Processing 700/784 atomic regions from SNP 209909 to 210509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,305 DEBUG Processing 491/598 atomic regions from SNP 147174 to 147774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,342 DEBUG Processing 197/199 atomic regions from SNP 58973 to 59573 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:46,435 DEBUG Processing 671/786 atomic regions from SNP 201031 to 201631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,494 DEBUG Processing 588/946 atomic regions from SNP 176311 to 176911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,549 DEBUG Processing 492/598 atomic regions from SNP 147474 to 148074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,559 DEBUG Processing 701/784 atomic regions from SNP 210209 to 210809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,565 DEBUG Processing 528/1054 atomic regions from SNP 158187 to 158787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,569 DEBUG Processing 198/199 atomic regions from SNP 59273 to 59873 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:46,682 DEBUG Processing 672/786 atomic regions from SNP 201331 to 201931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,790 DEBUG Processing 589/946 atomic regions from SNP 176611 to 177211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,846 DEBUG Processing 493/598 atomic regions from SNP 147774 to 148374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,900 DEBUG Processing 199/199 atomic regions from SNP 59573 to 60173 for chrX (subchromosome 7 of 7). 2025-01-31 09:41:46,926 DEBUG Processing 702/784 atomic regions from SNP 210509 to 211109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,965 DEBUG Processing 529/1054 atomic regions from SNP 158487 to 159087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,004 DEBUG Processing 673/786 atomic regions from SNP 201631 to 202231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,148 DEBUG Unique SNPs positions in subchromosome 7: 60174 2025-01-31 09:41:47,165 DEBUG Processing 590/946 atomic regions from SNP 176911 to 177511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,209 DEBUG Processing 494/598 atomic regions from SNP 148074 to 148674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,228 DEBUG Subchromosome time: 49.737643480999395, subchromosome SNPs: 60174 2025-01-31 09:41:47,229 DEBUG Estimated BADs: [0.41, 2.88, 0.82, 0.41, 0.00, 0.00, 0.41, 0.41, 4.11, 0.41, 0.41, 2.05, 0.41, 0.82, 0.41, 0.14, 0.10, 0.41] SNP counts: [3642, 675, 6544, 19548, 3, 30, 345, 21928, 102, 5945, 26607, 1480, 38558, 7905, 7150, 14571, 9732, 50442] SNP IDs counts: [3642, 675, 6544, 19548, 3, 30, 345, 21928, 102, 5945, 26607, 1480, 38558, 7905, 7150, 14571, 9732, 50442] Critical gap: 794934bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.55Mbp, 7.91Mbp, 11.99Mbp, 26.91Mbp[1.11Mbp], 28.03Mbp[1.53Mbp], 30.24Mbp[0.89Mbp], 34.58Mbp[0.89Mbp], 50.58Mbp, 50.64Mbp, 54.26Mbp[1.02Mbp], 73.47Mbp, 74.25Mbp, 101.25Mbp, 105.97Mbp, 110.81Mbp, 124.25Mbp[1.78Mbp], 134.13Mbp, 171.03Mbp] 2025-01-31 09:41:47,229 DEBUG chrX time: 49.73833799501881 s 2025-01-31 09:41:47,257 DEBUG Processing 703/784 atomic regions from SNP 210809 to 211409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,294 DEBUG Processing 674/786 atomic regions from SNP 201931 to 202531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,310 DEBUG Processing 530/1054 atomic regions from SNP 158787 to 159387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,406 DEBUG chrX: Fitting background model for 16 segments 2025-01-31 09:41:47,425 DEBUG Processing 591/946 atomic regions from SNP 177211 to 177811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,455 DEBUG Processing 495/598 atomic regions from SNP 148374 to 148974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,550 DEBUG Processing 704/784 atomic regions from SNP 211109 to 211709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,597 DEBUG Processing 675/786 atomic regions from SNP 202231 to 202831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,660 DEBUG Processing 531/1054 atomic regions from SNP 159087 to 159687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,740 DEBUG Processing 592/946 atomic regions from SNP 177511 to 178111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,763 DEBUG Processing 496/598 atomic regions from SNP 148674 to 149274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,914 DEBUG Processing 705/784 atomic regions from SNP 211409 to 212009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,971 DEBUG Processing 676/786 atomic regions from SNP 202531 to 203131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,048 DEBUG Processing 532/1054 atomic regions from SNP 159387 to 159987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,104 DEBUG Processing 593/946 atomic regions from SNP 177811 to 178411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,106 DEBUG Processing 497/598 atomic regions from SNP 148974 to 149574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,262 DEBUG Processing 706/784 atomic regions from SNP 211709 to 212309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,319 DEBUG Processing 677/786 atomic regions from SNP 202831 to 203431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,393 DEBUG Processing 498/598 atomic regions from SNP 149274 to 149874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,410 DEBUG Processing 594/946 atomic regions from SNP 178111 to 178711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,413 DEBUG Processing 533/1054 atomic regions from SNP 159687 to 160287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,610 DEBUG Processing 707/784 atomic regions from SNP 212009 to 212609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,629 DEBUG Processing 678/786 atomic regions from SNP 203131 to 203731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,672 DEBUG Processing 499/598 atomic regions from SNP 149574 to 150174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,694 DEBUG Processing 595/946 atomic regions from SNP 178411 to 179011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,732 DEBUG Processing 534/1054 atomic regions from SNP 159987 to 160587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,875 DEBUG Processing 708/784 atomic regions from SNP 212309 to 212909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,947 DEBUG Processing 679/786 atomic regions from SNP 203431 to 204031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,000 DEBUG Processing 500/598 atomic regions from SNP 149874 to 150474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,038 DEBUG Processing 596/946 atomic regions from SNP 178711 to 179311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,110 DEBUG Processing 535/1054 atomic regions from SNP 160287 to 160887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,158 DEBUG Processing 709/784 atomic regions from SNP 212609 to 213209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,208 DEBUG Processing 680/786 atomic regions from SNP 203731 to 204331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,246 DEBUG Processing 501/598 atomic regions from SNP 150174 to 150774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,290 DEBUG Processing 597/946 atomic regions from SNP 179011 to 179611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,439 DEBUG Processing 536/1054 atomic regions from SNP 160587 to 161187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,467 DEBUG Processing 710/784 atomic regions from SNP 212909 to 213509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,557 DEBUG Processing 681/786 atomic regions from SNP 204031 to 204631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,580 DEBUG Processing 502/598 atomic regions from SNP 150474 to 151074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,629 DEBUG Processing 598/946 atomic regions from SNP 179311 to 179911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,793 DEBUG Processing 537/1054 atomic regions from SNP 160887 to 161487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,795 DEBUG Processing 711/784 atomic regions from SNP 213209 to 213809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,945 DEBUG Processing 682/786 atomic regions from SNP 204331 to 204931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,973 DEBUG Processing 503/598 atomic regions from SNP 150774 to 151374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,016 DEBUG Processing 599/946 atomic regions from SNP 179611 to 180211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,091 DEBUG Processing 712/784 atomic regions from SNP 213509 to 214109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,126 DEBUG Processing 538/1054 atomic regions from SNP 161187 to 161787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,194 DEBUG Processing 683/786 atomic regions from SNP 204631 to 205231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,218 DEBUG Processing 504/598 atomic regions from SNP 151074 to 151674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,279 DEBUG Processing 600/946 atomic regions from SNP 179911 to 180511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,334 DEBUG Processing 713/784 atomic regions from SNP 213809 to 214409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,415 DEBUG Processing 539/1054 atomic regions from SNP 161487 to 162087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,440 DEBUG Processing 684/786 atomic regions from SNP 204931 to 205531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,456 DEBUG Processing 505/598 atomic regions from SNP 151374 to 151974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,539 DEBUG Processing 601/946 atomic regions from SNP 180211 to 180811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,592 DEBUG Processing 714/784 atomic regions from SNP 214109 to 214709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,685 DEBUG Processing 506/598 atomic regions from SNP 151674 to 152274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,685 DEBUG Processing 685/786 atomic regions from SNP 205231 to 205831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,697 DEBUG Processing 540/1054 atomic regions from SNP 161787 to 162387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,786 DEBUG Processing 602/946 atomic regions from SNP 180511 to 181111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,825 DEBUG Processing 715/784 atomic regions from SNP 214409 to 215009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,917 DEBUG Processing 507/598 atomic regions from SNP 151974 to 152574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,920 DEBUG Processing 686/786 atomic regions from SNP 205531 to 206131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,968 DEBUG Processing 541/1054 atomic regions from SNP 162087 to 162687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,037 DEBUG Processing 603/946 atomic regions from SNP 180811 to 181411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,056 DEBUG Processing 716/784 atomic regions from SNP 214709 to 215309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,139 DEBUG Processing 508/598 atomic regions from SNP 152274 to 152874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,155 DEBUG Processing 687/786 atomic regions from SNP 205831 to 206431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,231 DEBUG Processing 542/1054 atomic regions from SNP 162387 to 162987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,280 DEBUG Processing 604/946 atomic regions from SNP 181111 to 181711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,285 DEBUG Processing 717/784 atomic regions from SNP 215009 to 215609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,365 DEBUG Processing 509/598 atomic regions from SNP 152574 to 153174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,382 DEBUG Processing 688/786 atomic regions from SNP 206131 to 206731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,488 DEBUG Processing 543/1054 atomic regions from SNP 162687 to 163287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,526 DEBUG Processing 605/946 atomic regions from SNP 181411 to 182011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,539 DEBUG Processing 718/784 atomic regions from SNP 215309 to 215909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,588 DEBUG Processing 510/598 atomic regions from SNP 152874 to 153474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,613 DEBUG Processing 689/786 atomic regions from SNP 206431 to 207031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,749 DEBUG Processing 544/1054 atomic regions from SNP 162987 to 163587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,781 DEBUG Processing 606/946 atomic regions from SNP 181711 to 182311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,789 DEBUG Processing 719/784 atomic regions from SNP 215609 to 216209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,823 DEBUG Processing 511/598 atomic regions from SNP 153174 to 153774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,852 DEBUG Processing 690/786 atomic regions from SNP 206731 to 207331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,020 DEBUG Processing 545/1054 atomic regions from SNP 163287 to 163887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,045 DEBUG Processing 607/946 atomic regions from SNP 182011 to 182611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,055 DEBUG Processing 720/784 atomic regions from SNP 215909 to 216509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,066 DEBUG Processing 512/598 atomic regions from SNP 153474 to 154074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,086 DEBUG Processing 691/786 atomic regions from SNP 207031 to 207631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,355 DEBUG Processing 721/784 atomic regions from SNP 216209 to 216809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,360 DEBUG Processing 513/598 atomic regions from SNP 153774 to 154374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,363 DEBUG Processing 546/1054 atomic regions from SNP 163587 to 164187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,363 DEBUG Processing 608/946 atomic regions from SNP 182311 to 182911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,383 DEBUG Processing 692/786 atomic regions from SNP 207331 to 207931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,676 DEBUG Processing 722/784 atomic regions from SNP 216509 to 217109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,679 DEBUG Processing 514/598 atomic regions from SNP 154074 to 154674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,697 DEBUG Processing 693/786 atomic regions from SNP 207631 to 208231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,706 DEBUG Processing 609/946 atomic regions from SNP 182611 to 183211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,719 DEBUG Processing 547/1054 atomic regions from SNP 163887 to 164487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,946 DEBUG Processing 723/784 atomic regions from SNP 216809 to 217409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,950 DEBUG Processing 515/598 atomic regions from SNP 154374 to 154974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,971 DEBUG Processing 694/786 atomic regions from SNP 207931 to 208531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,994 DEBUG Processing 610/946 atomic regions from SNP 182911 to 183511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,018 DEBUG Processing 548/1054 atomic regions from SNP 164187 to 164787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,181 DEBUG Processing 724/784 atomic regions from SNP 217109 to 217709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,204 DEBUG Processing 516/598 atomic regions from SNP 154674 to 155274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,206 DEBUG Processing 695/786 atomic regions from SNP 208231 to 208831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,249 DEBUG Processing 611/946 atomic regions from SNP 183211 to 183811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,290 DEBUG Processing 549/1054 atomic regions from SNP 164487 to 165087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,411 DEBUG Processing 725/784 atomic regions from SNP 217409 to 218009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,464 DEBUG Processing 696/786 atomic regions from SNP 208531 to 209131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,474 DEBUG Processing 517/598 atomic regions from SNP 154974 to 155574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,524 DEBUG Processing 612/946 atomic regions from SNP 183511 to 184111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,588 DEBUG Processing 550/1054 atomic regions from SNP 164787 to 165387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,632 DEBUG Processing 726/784 atomic regions from SNP 217709 to 218309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,696 DEBUG Processing 697/786 atomic regions from SNP 208831 to 209431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,720 DEBUG Processing 518/598 atomic regions from SNP 155274 to 155874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,773 DEBUG Processing 613/946 atomic regions from SNP 183811 to 184411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,855 DEBUG Processing 727/784 atomic regions from SNP 218009 to 218609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,866 DEBUG Processing 551/1054 atomic regions from SNP 165087 to 165687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,929 DEBUG Processing 698/786 atomic regions from SNP 209131 to 209731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,972 DEBUG Processing 519/598 atomic regions from SNP 155574 to 156174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,025 DEBUG Processing 614/946 atomic regions from SNP 184111 to 184711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,079 DEBUG Processing 728/784 atomic regions from SNP 218309 to 218909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,144 DEBUG Processing 552/1054 atomic regions from SNP 165387 to 165987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,168 DEBUG Processing 699/786 atomic regions from SNP 209431 to 210031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,199 DEBUG Processing 520/598 atomic regions from SNP 155874 to 156474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,268 DEBUG Processing 615/946 atomic regions from SNP 184411 to 185011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,299 DEBUG Processing 729/784 atomic regions from SNP 218609 to 219209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,409 DEBUG Processing 700/786 atomic regions from SNP 209731 to 210331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,428 DEBUG Processing 553/1054 atomic regions from SNP 165687 to 166287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,431 DEBUG Processing 521/598 atomic regions from SNP 156174 to 156774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,515 DEBUG Processing 616/946 atomic regions from SNP 184711 to 185311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,524 DEBUG Processing 730/784 atomic regions from SNP 218909 to 219509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,645 DEBUG Processing 701/786 atomic regions from SNP 210031 to 210631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,677 DEBUG Processing 522/598 atomic regions from SNP 156474 to 157074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,714 DEBUG Processing 554/1054 atomic regions from SNP 165987 to 166587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,752 DEBUG Processing 731/784 atomic regions from SNP 219209 to 219809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,763 DEBUG Processing 617/946 atomic regions from SNP 185011 to 185611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,878 DEBUG Processing 702/786 atomic regions from SNP 210331 to 210931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,922 DEBUG Processing 523/598 atomic regions from SNP 156774 to 157374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,978 DEBUG Processing 732/784 atomic regions from SNP 219509 to 220109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,983 DEBUG Processing 555/1054 atomic regions from SNP 166287 to 166887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,014 DEBUG Processing 618/946 atomic regions from SNP 185311 to 185911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,106 DEBUG Processing 703/786 atomic regions from SNP 210631 to 211231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,153 DEBUG Processing 524/598 atomic regions from SNP 157074 to 157674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,219 DEBUG Processing 733/784 atomic regions from SNP 219809 to 220409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,242 DEBUG Processing 556/1054 atomic regions from SNP 166587 to 167187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,278 DEBUG Processing 619/946 atomic regions from SNP 185611 to 186211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,334 DEBUG Processing 704/786 atomic regions from SNP 210931 to 211531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,369 DEBUG Processing 525/598 atomic regions from SNP 157374 to 157974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,446 DEBUG Processing 734/784 atomic regions from SNP 220109 to 220709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,499 DEBUG Processing 557/1054 atomic regions from SNP 166887 to 167487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,547 DEBUG Processing 620/946 atomic regions from SNP 185911 to 186511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,563 DEBUG Processing 705/786 atomic regions from SNP 211231 to 211831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,587 DEBUG Processing 526/598 atomic regions from SNP 157674 to 158274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,664 DEBUG Processing 735/784 atomic regions from SNP 220409 to 221009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,768 DEBUG Processing 558/1054 atomic regions from SNP 167187 to 167787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,798 DEBUG Processing 621/946 atomic regions from SNP 186211 to 186811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,801 DEBUG Processing 706/786 atomic regions from SNP 211531 to 212131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,816 DEBUG Processing 527/598 atomic regions from SNP 157974 to 158574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,890 DEBUG Processing 736/784 atomic regions from SNP 220709 to 221309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,037 DEBUG Processing 559/1054 atomic regions from SNP 167487 to 168087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,042 DEBUG Processing 707/786 atomic regions from SNP 211831 to 212431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,049 DEBUG Processing 528/598 atomic regions from SNP 158274 to 158874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,072 DEBUG Processing 622/946 atomic regions from SNP 186511 to 187111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,130 DEBUG Processing 737/784 atomic regions from SNP 221009 to 221609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,278 DEBUG Processing 529/598 atomic regions from SNP 158574 to 159174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,286 DEBUG Processing 708/786 atomic regions from SNP 212131 to 212731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,321 DEBUG Processing 560/1054 atomic regions from SNP 167787 to 168387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,328 DEBUG Processing 623/946 atomic regions from SNP 186811 to 187411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,371 DEBUG Processing 738/784 atomic regions from SNP 221309 to 221909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,500 DEBUG Processing 530/598 atomic regions from SNP 158874 to 159474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,524 DEBUG Processing 709/786 atomic regions from SNP 212431 to 213031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,582 DEBUG Processing 624/946 atomic regions from SNP 187111 to 187711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,596 DEBUG Processing 561/1054 atomic regions from SNP 168087 to 168687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,601 DEBUG Processing 739/784 atomic regions from SNP 221609 to 222209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,717 DEBUG Processing 531/598 atomic regions from SNP 159174 to 159774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,756 DEBUG Processing 710/786 atomic regions from SNP 212731 to 213331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,824 DEBUG Processing 625/946 atomic regions from SNP 187411 to 188011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,824 DEBUG Processing 740/784 atomic regions from SNP 221909 to 222509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,862 DEBUG Processing 562/1054 atomic regions from SNP 168387 to 168987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,932 DEBUG Processing 532/598 atomic regions from SNP 159474 to 160074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,985 DEBUG Processing 711/786 atomic regions from SNP 213031 to 213631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,043 DEBUG Processing 741/784 atomic regions from SNP 222209 to 222809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,061 DEBUG Processing 626/946 atomic regions from SNP 187711 to 188311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,126 DEBUG Processing 563/1054 atomic regions from SNP 168687 to 169287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,147 DEBUG Processing 533/598 atomic regions from SNP 159774 to 160374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,219 DEBUG Processing 712/786 atomic regions from SNP 213331 to 213931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,262 DEBUG Processing 742/784 atomic regions from SNP 222509 to 223109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,302 DEBUG Processing 627/946 atomic regions from SNP 188011 to 188611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,374 DEBUG Processing 534/598 atomic regions from SNP 160074 to 160674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,401 DEBUG Processing 564/1054 atomic regions from SNP 168987 to 169587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,464 DEBUG Processing 713/786 atomic regions from SNP 213631 to 214231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,485 DEBUG Processing 743/784 atomic regions from SNP 222809 to 223409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,544 DEBUG Processing 628/946 atomic regions from SNP 188311 to 188911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,660 DEBUG Processing 535/598 atomic regions from SNP 160374 to 160974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,716 DEBUG Processing 565/1054 atomic regions from SNP 169287 to 169887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,727 DEBUG Processing 744/784 atomic regions from SNP 223109 to 223709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,735 DEBUG Processing 714/786 atomic regions from SNP 213931 to 214531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,787 DEBUG Processing 629/946 atomic regions from SNP 188611 to 189211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,890 DEBUG Processing 536/598 atomic regions from SNP 160674 to 161274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,972 DEBUG Processing 745/784 atomic regions from SNP 223409 to 224009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,995 DEBUG Processing 715/786 atomic regions from SNP 214231 to 214831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,005 DEBUG Processing 566/1054 atomic regions from SNP 169587 to 170187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,039 DEBUG Processing 630/946 atomic regions from SNP 188911 to 189511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,113 DEBUG Processing 537/598 atomic regions from SNP 160974 to 161574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,202 DEBUG Processing 746/784 atomic regions from SNP 223709 to 224309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,246 DEBUG Processing 716/786 atomic regions from SNP 214531 to 215131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,292 DEBUG Processing 631/946 atomic regions from SNP 189211 to 189811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,298 DEBUG Processing 567/1054 atomic regions from SNP 169887 to 170487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,340 DEBUG Processing 538/598 atomic regions from SNP 161274 to 161874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,459 DEBUG Processing 747/784 atomic regions from SNP 224009 to 224609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,498 DEBUG Processing 717/786 atomic regions from SNP 214831 to 215431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,550 DEBUG Processing 632/946 atomic regions from SNP 189511 to 190111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,568 DEBUG Processing 539/598 atomic regions from SNP 161574 to 162174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,587 DEBUG Processing 568/1054 atomic regions from SNP 170187 to 170787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,699 DEBUG Processing 748/784 atomic regions from SNP 224309 to 224909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,737 DEBUG Processing 718/786 atomic regions from SNP 215131 to 215731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,791 DEBUG Processing 540/598 atomic regions from SNP 161874 to 162474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,796 DEBUG Processing 633/946 atomic regions from SNP 189811 to 190411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,863 DEBUG Processing 569/1054 atomic regions from SNP 170487 to 171087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,918 DEBUG Processing 749/784 atomic regions from SNP 224609 to 225209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,976 DEBUG Processing 719/786 atomic regions from SNP 215431 to 216031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,013 DEBUG Processing 541/598 atomic regions from SNP 162174 to 162774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,041 DEBUG Processing 634/946 atomic regions from SNP 190111 to 190711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,137 DEBUG Processing 570/1054 atomic regions from SNP 170787 to 171387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,139 DEBUG Processing 750/784 atomic regions from SNP 224909 to 225509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,227 DEBUG Processing 720/786 atomic regions from SNP 215731 to 216331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,235 DEBUG Processing 542/598 atomic regions from SNP 162474 to 163074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,302 DEBUG Processing 635/946 atomic regions from SNP 190411 to 191011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,359 DEBUG Processing 751/784 atomic regions from SNP 225209 to 225809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,421 DEBUG Processing 571/1054 atomic regions from SNP 171087 to 171687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,456 DEBUG Processing 543/598 atomic regions from SNP 162774 to 163374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,480 DEBUG Processing 721/786 atomic regions from SNP 216031 to 216631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,580 DEBUG Processing 636/946 atomic regions from SNP 190711 to 191311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,655 DEBUG Processing 752/784 atomic regions from SNP 225509 to 226109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,797 DEBUG Processing 544/598 atomic regions from SNP 163074 to 163674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,816 DEBUG Processing 572/1054 atomic regions from SNP 171387 to 171987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,840 DEBUG Processing 722/786 atomic regions from SNP 216331 to 216931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,909 DEBUG Processing 637/946 atomic regions from SNP 191011 to 191611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,917 DEBUG Processing 753/784 atomic regions from SNP 225809 to 226409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,055 DEBUG Processing 545/598 atomic regions from SNP 163374 to 163974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,115 DEBUG Processing 723/786 atomic regions from SNP 216631 to 217231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,128 DEBUG Processing 573/1054 atomic regions from SNP 171687 to 172287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,151 DEBUG Processing 754/784 atomic regions from SNP 226109 to 226709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,163 DEBUG Processing 638/946 atomic regions from SNP 191311 to 191911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,277 DEBUG Processing 546/598 atomic regions from SNP 163674 to 164274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,376 DEBUG Processing 724/786 atomic regions from SNP 216931 to 217531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,396 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:42:00,405 DEBUG Processing 755/784 atomic regions from SNP 226409 to 227009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,437 DEBUG Processing 639/946 atomic regions from SNP 191611 to 192211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,445 DEBUG Processing 574/1054 atomic regions from SNP 171987 to 172587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,543 DEBUG Processing 547/598 atomic regions from SNP 163974 to 164574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,625 DEBUG Processing 725/786 atomic regions from SNP 217231 to 217831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,639 DEBUG Processing 756/784 atomic regions from SNP 226709 to 227309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,683 DEBUG Processing 640/946 atomic regions from SNP 191911 to 192511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,752 DEBUG Processing 575/1054 atomic regions from SNP 172287 to 172887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,861 DEBUG Processing 548/598 atomic regions from SNP 164274 to 164874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,902 DEBUG Processing 726/786 atomic regions from SNP 217531 to 218131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,911 DEBUG Processing 757/784 atomic regions from SNP 227009 to 227609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,939 DEBUG Processing 641/946 atomic regions from SNP 192211 to 192811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,030 DEBUG Processing 576/1054 atomic regions from SNP 172587 to 173187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,182 DEBUG Processing 549/598 atomic regions from SNP 164574 to 165174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,202 DEBUG Processing 758/784 atomic regions from SNP 227309 to 227909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,206 DEBUG Processing 727/786 atomic regions from SNP 217831 to 218431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,226 DEBUG Processing 642/946 atomic regions from SNP 192511 to 193111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,304 DEBUG Processing 577/1054 atomic regions from SNP 172887 to 173487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,421 DEBUG Processing 550/598 atomic regions from SNP 164874 to 165474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,444 DEBUG Processing 759/784 atomic regions from SNP 227609 to 228209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,469 DEBUG Processing 728/786 atomic regions from SNP 218131 to 218731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,484 DEBUG Processing 643/946 atomic regions from SNP 192811 to 193411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,581 DEBUG Processing 578/1054 atomic regions from SNP 173187 to 173787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,647 DEBUG Processing 551/598 atomic regions from SNP 165174 to 165774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,675 DEBUG Processing 760/784 atomic regions from SNP 227909 to 228509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,713 DEBUG Processing 729/786 atomic regions from SNP 218431 to 219031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,732 DEBUG Processing 644/946 atomic regions from SNP 193111 to 193711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,852 DEBUG Processing 579/1054 atomic regions from SNP 173487 to 174087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,879 DEBUG Processing 552/598 atomic regions from SNP 165474 to 166074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,903 DEBUG Processing 761/784 atomic regions from SNP 228209 to 228809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,950 DEBUG Processing 730/786 atomic regions from SNP 218731 to 219331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,978 DEBUG Processing 645/946 atomic regions from SNP 193411 to 194011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,103 DEBUG Processing 553/598 atomic regions from SNP 165774 to 166374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,114 DEBUG Processing 580/1054 atomic regions from SNP 173787 to 174387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,122 DEBUG Processing 762/784 atomic regions from SNP 228509 to 229109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,181 DEBUG Processing 731/786 atomic regions from SNP 219031 to 219631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,218 DEBUG Processing 646/946 atomic regions from SNP 193711 to 194311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,325 DEBUG Processing 554/598 atomic regions from SNP 166074 to 166674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,342 DEBUG Processing 763/784 atomic regions from SNP 228809 to 229409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,386 DEBUG Processing 581/1054 atomic regions from SNP 174087 to 174687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,421 DEBUG Processing 732/786 atomic regions from SNP 219331 to 219931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,466 DEBUG Processing 647/946 atomic regions from SNP 194011 to 194611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,551 DEBUG Processing 555/598 atomic regions from SNP 166374 to 166974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,568 DEBUG Processing 764/784 atomic regions from SNP 229109 to 229709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,662 DEBUG Processing 733/786 atomic regions from SNP 219631 to 220231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,663 DEBUG Processing 582/1054 atomic regions from SNP 174387 to 174987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,713 DEBUG Processing 648/946 atomic regions from SNP 194311 to 194911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,782 DEBUG Processing 556/598 atomic regions from SNP 166674 to 167274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,795 DEBUG Processing 765/784 atomic regions from SNP 229409 to 230009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,900 DEBUG Processing 734/786 atomic regions from SNP 219931 to 220531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,939 DEBUG Processing 583/1054 atomic regions from SNP 174687 to 175287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,959 DEBUG Processing 649/946 atomic regions from SNP 194611 to 195211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,016 DEBUG Processing 557/598 atomic regions from SNP 166974 to 167574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,019 DEBUG Processing 766/784 atomic regions from SNP 229709 to 230309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,133 DEBUG Processing 735/786 atomic regions from SNP 220231 to 220831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,203 DEBUG Processing 650/946 atomic regions from SNP 194911 to 195511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,212 DEBUG Processing 584/1054 atomic regions from SNP 174987 to 175587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,245 DEBUG Processing 558/598 atomic regions from SNP 167274 to 167874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,249 DEBUG Processing 767/784 atomic regions from SNP 230009 to 230609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,364 DEBUG Processing 736/786 atomic regions from SNP 220531 to 221131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,450 DEBUG Processing 651/946 atomic regions from SNP 195211 to 195811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,471 DEBUG Processing 559/598 atomic regions from SNP 167574 to 168174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,476 DEBUG Processing 585/1054 atomic regions from SNP 175287 to 175887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,477 DEBUG Processing 768/784 atomic regions from SNP 230309 to 230909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,585 DEBUG Processing 737/786 atomic regions from SNP 220831 to 221431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,697 DEBUG Processing 560/598 atomic regions from SNP 167874 to 168474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,702 DEBUG Processing 652/946 atomic regions from SNP 195511 to 196111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,709 DEBUG Processing 769/784 atomic regions from SNP 230609 to 231209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,736 DEBUG Processing 586/1054 atomic regions from SNP 175587 to 176187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,887 DEBUG Processing 738/786 atomic regions from SNP 221131 to 221731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,955 DEBUG Processing 561/598 atomic regions from SNP 168174 to 168774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,977 DEBUG Processing 770/784 atomic regions from SNP 230909 to 231509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,983 DEBUG Processing 653/946 atomic regions from SNP 195811 to 196411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,012 DEBUG Processing 587/1054 atomic regions from SNP 175887 to 176487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,134 DEBUG Processing 739/786 atomic regions from SNP 221431 to 222031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,237 DEBUG Processing 562/598 atomic regions from SNP 168474 to 169074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,269 DEBUG Processing 771/784 atomic regions from SNP 231209 to 231809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,272 DEBUG Processing 654/946 atomic regions from SNP 196111 to 196711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,303 DEBUG Processing 588/1054 atomic regions from SNP 176187 to 176787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,372 DEBUG Processing 740/786 atomic regions from SNP 221731 to 222331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,465 DEBUG Processing 563/598 atomic regions from SNP 168774 to 169374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,499 DEBUG Processing 772/784 atomic regions from SNP 231509 to 232109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,525 DEBUG Processing 655/946 atomic regions from SNP 196411 to 197011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,563 DEBUG Processing 589/1054 atomic regions from SNP 176487 to 177087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,599 DEBUG Processing 741/786 atomic regions from SNP 222031 to 222631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,688 DEBUG Processing 564/598 atomic regions from SNP 169074 to 169674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,727 DEBUG Processing 773/784 atomic regions from SNP 231809 to 232409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,769 DEBUG Processing 656/946 atomic regions from SNP 196711 to 197311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,821 DEBUG Processing 590/1054 atomic regions from SNP 176787 to 177387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,822 DEBUG Processing 742/786 atomic regions from SNP 222331 to 222931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,906 DEBUG Processing 565/598 atomic regions from SNP 169374 to 169974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,956 DEBUG Processing 774/784 atomic regions from SNP 232109 to 232709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,013 DEBUG Processing 657/946 atomic regions from SNP 197011 to 197611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,056 DEBUG Processing 743/786 atomic regions from SNP 222631 to 223231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,081 DEBUG Processing 591/1054 atomic regions from SNP 177087 to 177687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,125 DEBUG Processing 566/598 atomic regions from SNP 169674 to 170274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,181 DEBUG Processing 775/784 atomic regions from SNP 232409 to 233009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,258 DEBUG Processing 658/946 atomic regions from SNP 197311 to 197911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,285 DEBUG Processing 744/786 atomic regions from SNP 222931 to 223531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,343 DEBUG Processing 567/598 atomic regions from SNP 169974 to 170574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,347 DEBUG Processing 592/1054 atomic regions from SNP 177387 to 177987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,404 DEBUG Processing 776/784 atomic regions from SNP 232709 to 233309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,501 DEBUG Processing 659/946 atomic regions from SNP 197611 to 198211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,515 DEBUG Processing 745/786 atomic regions from SNP 223231 to 223831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,564 DEBUG Processing 568/598 atomic regions from SNP 170274 to 170874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,613 DEBUG Processing 593/1054 atomic regions from SNP 177687 to 178287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,628 DEBUG Processing 777/784 atomic regions from SNP 233009 to 233609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,739 DEBUG Processing 660/946 atomic regions from SNP 197911 to 198511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,740 DEBUG Processing 746/786 atomic regions from SNP 223531 to 224131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,788 DEBUG Processing 569/598 atomic regions from SNP 170574 to 171174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,854 DEBUG Processing 778/784 atomic regions from SNP 233309 to 233909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,878 DEBUG Processing 594/1054 atomic regions from SNP 177987 to 178587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,968 DEBUG Processing 747/786 atomic regions from SNP 223831 to 224431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,988 DEBUG Processing 661/946 atomic regions from SNP 198211 to 198811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,017 DEBUG Processing 570/598 atomic regions from SNP 170874 to 171474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,083 DEBUG Processing 779/784 atomic regions from SNP 233609 to 234209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,142 DEBUG Processing 595/1054 atomic regions from SNP 178287 to 178887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,195 DEBUG Processing 748/786 atomic regions from SNP 224131 to 224731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,233 DEBUG Processing 662/946 atomic regions from SNP 198511 to 199111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,242 DEBUG Processing 571/598 atomic regions from SNP 171174 to 171774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,311 DEBUG Processing 780/784 atomic regions from SNP 233909 to 234509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,412 DEBUG Processing 596/1054 atomic regions from SNP 178587 to 179187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,425 DEBUG Processing 749/786 atomic regions from SNP 224431 to 225031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,468 DEBUG Processing 572/598 atomic regions from SNP 171474 to 172074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,481 DEBUG Processing 663/946 atomic regions from SNP 198811 to 199411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,537 DEBUG Processing 781/784 atomic regions from SNP 234209 to 234809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,661 DEBUG Processing 750/786 atomic regions from SNP 224731 to 225331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,684 DEBUG Processing 597/1054 atomic regions from SNP 178887 to 179487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,714 DEBUG Processing 573/598 atomic regions from SNP 171774 to 172374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,731 DEBUG Processing 664/946 atomic regions from SNP 199111 to 199711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,766 DEBUG Processing 782/784 atomic regions from SNP 234509 to 235109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,892 DEBUG Processing 751/786 atomic regions from SNP 225031 to 225631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,945 DEBUG Processing 574/598 atomic regions from SNP 172074 to 172674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,948 DEBUG Processing 598/1054 atomic regions from SNP 179187 to 179787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,978 DEBUG Processing 665/946 atomic regions from SNP 199411 to 200011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,990 DEBUG Processing 783/784 atomic regions from SNP 234809 to 235409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,113 DEBUG Processing 752/786 atomic regions from SNP 225331 to 225931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,178 DEBUG Processing 575/598 atomic regions from SNP 172374 to 172974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,205 DEBUG Processing 599/1054 atomic regions from SNP 179487 to 180087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,220 DEBUG Processing 666/946 atomic regions from SNP 199711 to 200311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,227 DEBUG Processing 784/784 atomic regions from SNP 235109 to 235709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,333 DEBUG Processing 753/786 atomic regions from SNP 225631 to 226231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,346 DEBUG Unique SNPs positions in subchromosome 1: 235710 2025-01-31 09:42:07,397 DEBUG Processing 576/598 atomic regions from SNP 172674 to 173274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,459 DEBUG Processing 600/1054 atomic regions from SNP 179787 to 180387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,462 DEBUG Processing 667/946 atomic regions from SNP 200011 to 200611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,550 DEBUG Processing 754/786 atomic regions from SNP 225931 to 226531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,616 DEBUG Processing 577/598 atomic regions from SNP 172974 to 173574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,709 DEBUG Processing 668/946 atomic regions from SNP 200311 to 200911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,718 DEBUG Processing 601/1054 atomic regions from SNP 180087 to 180687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,775 DEBUG Processing 755/786 atomic regions from SNP 226231 to 226831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,839 DEBUG Processing 578/598 atomic regions from SNP 173274 to 173874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,966 DEBUG Processing 669/946 atomic regions from SNP 200611 to 201211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,983 DEBUG Processing 602/1054 atomic regions from SNP 180387 to 180987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,000 DEBUG Processing 756/786 atomic regions from SNP 226531 to 227131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,062 DEBUG Processing 579/598 atomic regions from SNP 173574 to 174174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,220 DEBUG Processing 670/946 atomic regions from SNP 200911 to 201511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,222 DEBUG Processing 757/786 atomic regions from SNP 226831 to 227431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,242 DEBUG Processing 603/1054 atomic regions from SNP 180687 to 181287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,277 DEBUG Processing 580/598 atomic regions from SNP 173874 to 174474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,448 DEBUG Processing 758/786 atomic regions from SNP 227131 to 227731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,469 DEBUG Processing 671/946 atomic regions from SNP 201211 to 201811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,502 DEBUG Processing 581/598 atomic regions from SNP 174174 to 174774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,502 DEBUG Processing 604/1054 atomic regions from SNP 180987 to 181587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,672 DEBUG Processing 759/786 atomic regions from SNP 227431 to 228031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,710 DEBUG Processing 672/946 atomic regions from SNP 201511 to 202111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,717 DEBUG Processing 582/598 atomic regions from SNP 174474 to 175074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,759 DEBUG Processing 605/1054 atomic regions from SNP 181287 to 181887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,894 DEBUG Processing 760/786 atomic regions from SNP 227731 to 228331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,933 DEBUG Processing 583/598 atomic regions from SNP 174774 to 175374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,950 DEBUG Processing 673/946 atomic regions from SNP 201811 to 202411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,016 DEBUG Processing 606/1054 atomic regions from SNP 181587 to 182187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,115 DEBUG Processing 761/786 atomic regions from SNP 228031 to 228631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,150 DEBUG Processing 584/598 atomic regions from SNP 175074 to 175674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,185 DEBUG Processing 674/946 atomic regions from SNP 202111 to 202711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,271 DEBUG Processing 607/1054 atomic regions from SNP 181887 to 182487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,338 DEBUG Processing 762/786 atomic regions from SNP 228331 to 228931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,369 DEBUG Processing 585/598 atomic regions from SNP 175374 to 175974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,421 DEBUG Processing 675/946 atomic regions from SNP 202411 to 203011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,525 DEBUG Processing 608/1054 atomic regions from SNP 182187 to 182787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,562 DEBUG Processing 763/786 atomic regions from SNP 228631 to 229231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,601 DEBUG Processing 586/598 atomic regions from SNP 175674 to 176274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,653 DEBUG Processing 676/946 atomic regions from SNP 202711 to 203311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,781 DEBUG Processing 609/1054 atomic regions from SNP 182487 to 183087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,783 DEBUG Processing 764/786 atomic regions from SNP 228931 to 229531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,825 DEBUG Processing 587/598 atomic regions from SNP 175974 to 176574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,890 DEBUG Processing 677/946 atomic regions from SNP 203011 to 203611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,009 DEBUG Processing 765/786 atomic regions from SNP 229231 to 229831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,039 DEBUG Processing 588/598 atomic regions from SNP 176274 to 176874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,046 DEBUG Processing 610/1054 atomic regions from SNP 182787 to 183387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,128 DEBUG Processing 678/946 atomic regions from SNP 203311 to 203911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,231 DEBUG Processing 766/786 atomic regions from SNP 229531 to 230131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,252 DEBUG Processing 589/598 atomic regions from SNP 176574 to 177174 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,315 DEBUG Processing 611/1054 atomic regions from SNP 183087 to 183687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,338 DEBUG Subchromosome time: 209.12771922699176, subchromosome SNPs: 235710 2025-01-31 09:42:10,339 DEBUG Estimated BADs: [0.35, 2.08, 0.52, 2.08, 4.17, 1.04, 3.13, 1.04, 6.25, 0.52, 2.08] SNP counts: [23121, 27673, 98132, 17732, 3468, 8470, 9808, 7823, 699, 7082, 31702] SNP IDs counts: [23121, 27673, 98132, 17732, 3468, 8470, 9808, 7823, 699, 7082, 31702] Critical gap: 703718bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 20.87Mbp, 36.69Mbp, 103.56Mbp, 113.73Mbp, 115.56Mbp, 120.08Mbp, 125.35Mbp, 129.72Mbp, 130.14Mbp, 134.14Mbp, 151.83Mbp] 2025-01-31 09:42:10,339 DEBUG chr5 time: 209.12821141805034 s 2025-01-31 09:42:10,365 DEBUG Processing 679/946 atomic regions from SNP 203611 to 204211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,455 DEBUG Processing 767/786 atomic regions from SNP 229831 to 230431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,467 DEBUG Processing 590/598 atomic regions from SNP 176874 to 177474 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,475 DEBUG chr5: Fitting background model for 11 segments 2025-01-31 09:42:10,586 DEBUG Processing 612/1054 atomic regions from SNP 183387 to 183987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,605 DEBUG Processing 680/946 atomic regions from SNP 203911 to 204511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,678 DEBUG Processing 768/786 atomic regions from SNP 230131 to 230731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,690 DEBUG Processing 591/598 atomic regions from SNP 177174 to 177774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,845 DEBUG Processing 681/946 atomic regions from SNP 204211 to 204811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,850 DEBUG Processing 613/1054 atomic regions from SNP 183687 to 184287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,903 DEBUG Processing 769/786 atomic regions from SNP 230431 to 231031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,922 DEBUG Processing 592/598 atomic regions from SNP 177474 to 178074 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,084 DEBUG Processing 682/946 atomic regions from SNP 204511 to 205111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,116 DEBUG Processing 614/1054 atomic regions from SNP 183987 to 184587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,129 DEBUG Processing 770/786 atomic regions from SNP 230731 to 231331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,137 DEBUG Processing 593/598 atomic regions from SNP 177774 to 178374 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,323 DEBUG Processing 683/946 atomic regions from SNP 204811 to 205411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,353 DEBUG Processing 594/598 atomic regions from SNP 178074 to 178674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,362 DEBUG Processing 771/786 atomic regions from SNP 231031 to 231631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,385 DEBUG Processing 615/1054 atomic regions from SNP 184287 to 184887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,555 DEBUG Processing 684/946 atomic regions from SNP 205111 to 205711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,573 DEBUG Processing 595/598 atomic regions from SNP 178374 to 178974 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,593 DEBUG Processing 772/786 atomic regions from SNP 231331 to 231931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,652 DEBUG Processing 616/1054 atomic regions from SNP 184587 to 185187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,784 DEBUG Processing 685/946 atomic regions from SNP 205411 to 206011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,802 DEBUG Processing 596/598 atomic regions from SNP 178674 to 179274 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,818 DEBUG Processing 773/786 atomic regions from SNP 231631 to 232231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,916 DEBUG Processing 617/1054 atomic regions from SNP 184887 to 185487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,024 DEBUG Processing 686/946 atomic regions from SNP 205711 to 206311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,043 DEBUG Processing 774/786 atomic regions from SNP 231931 to 232531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,047 DEBUG Processing 597/598 atomic regions from SNP 178974 to 179574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,193 DEBUG Processing 618/1054 atomic regions from SNP 185187 to 185787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,262 DEBUG Processing 775/786 atomic regions from SNP 232231 to 232831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,277 DEBUG Processing 598/598 atomic regions from SNP 179274 to 179874 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,289 DEBUG Processing 687/946 atomic regions from SNP 206011 to 206611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,396 DEBUG Unique SNPs positions in subchromosome 2: 179875 2025-01-31 09:42:12,473 DEBUG Processing 619/1054 atomic regions from SNP 185487 to 186087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,487 DEBUG Processing 776/786 atomic regions from SNP 232531 to 233131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,530 DEBUG Processing 688/946 atomic regions from SNP 206311 to 206911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,714 DEBUG Processing 777/786 atomic regions from SNP 232831 to 233431 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,737 DEBUG Processing 620/1054 atomic regions from SNP 185787 to 186387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,771 DEBUG Processing 689/946 atomic regions from SNP 206611 to 207211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,945 DEBUG Processing 778/786 atomic regions from SNP 233131 to 233731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,009 DEBUG Processing 621/1054 atomic regions from SNP 186087 to 186687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,012 DEBUG Processing 690/946 atomic regions from SNP 206911 to 207511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,173 DEBUG Processing 779/786 atomic regions from SNP 233431 to 234031 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,252 DEBUG Processing 691/946 atomic regions from SNP 207211 to 207811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,270 DEBUG Processing 622/1054 atomic regions from SNP 186387 to 186987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,405 DEBUG Processing 780/786 atomic regions from SNP 233731 to 234331 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,508 DEBUG Processing 692/946 atomic regions from SNP 207511 to 208111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,535 DEBUG Processing 623/1054 atomic regions from SNP 186687 to 187287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,625 DEBUG Processing 781/786 atomic regions from SNP 234031 to 234631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,767 DEBUG Processing 693/946 atomic regions from SNP 207811 to 208411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,796 DEBUG Processing 624/1054 atomic regions from SNP 186987 to 187587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,853 DEBUG Processing 782/786 atomic regions from SNP 234331 to 234931 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,005 DEBUG Processing 694/946 atomic regions from SNP 208111 to 208711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,061 DEBUG Processing 625/1054 atomic regions from SNP 187287 to 187887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,082 DEBUG Processing 783/786 atomic regions from SNP 234631 to 235231 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,211 DEBUG Subchromosome time: 157.67911318794359, subchromosome SNPs: 179875 2025-01-31 09:42:14,212 DEBUG Estimated BADs: [0.54, 3.26, 2.18, 0.36, 1.09, 0.54, 1.09, 3.26, 2.18, 3.26, 1.09, 3.26] SNP counts: [54505, 3012, 10968, 5383, 14190, 67060, 12317, 6471, 21279, 19057, 7506, 15644] SNP IDs counts: [54505, 3012, 10968, 5383, 14190, 67060, 12317, 6471, 21279, 19057, 7506, 15644] Critical gap: 718711bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 40.13Mbp, 41.86Mbp[0.87Mbp], 48.72Mbp, 52.52Mbp, 62.50Mbp, 107.07Mbp, 115.73Mbp, 119.23Mbp, 131.71Mbp, 141.72Mbp, 148.04Mbp, 156.51Mbp] 2025-01-31 09:42:14,212 DEBUG chr4 time: 157.67964276194107 s 2025-01-31 09:42:14,246 DEBUG Processing 695/946 atomic regions from SNP 208411 to 209011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,320 DEBUG Processing 784/786 atomic regions from SNP 234931 to 235531 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,334 DEBUG Processing 626/1054 atomic regions from SNP 187587 to 188187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,358 DEBUG chr4: Fitting background model for 12 segments 2025-01-31 09:42:14,493 DEBUG Processing 696/946 atomic regions from SNP 208711 to 209311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,561 DEBUG Processing 785/786 atomic regions from SNP 235231 to 235831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,614 DEBUG Processing 627/1054 atomic regions from SNP 187887 to 188487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,739 DEBUG Processing 697/946 atomic regions from SNP 209011 to 209611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,789 DEBUG Processing 786/786 atomic regions from SNP 235531 to 236131 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,885 DEBUG Processing 628/1054 atomic regions from SNP 188187 to 188787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,912 DEBUG Unique SNPs positions in subchromosome 1: 236132 2025-01-31 09:42:14,982 DEBUG Processing 698/946 atomic regions from SNP 209311 to 209911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,154 DEBUG Processing 629/1054 atomic regions from SNP 188487 to 189087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,223 DEBUG Processing 699/946 atomic regions from SNP 209611 to 210211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,469 DEBUG Processing 630/1054 atomic regions from SNP 188787 to 189387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,500 DEBUG Processing 700/946 atomic regions from SNP 209911 to 210511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,745 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:42:15,748 DEBUG chr6: Signal quantile: 0.995. signal threshold: 8. Best RMSEA: 0.023 2025-01-31 09:42:15,802 DEBUG Processing 631/1054 atomic regions from SNP 189087 to 189687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,817 DEBUG Processing 701/946 atomic regions from SNP 210211 to 210811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,060 DEBUG Processing 702/946 atomic regions from SNP 210511 to 211111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,073 DEBUG Processing 632/1054 atomic regions from SNP 189387 to 189987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,300 DEBUG Processing 703/946 atomic regions from SNP 210811 to 211411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,339 DEBUG Processing 633/1054 atomic regions from SNP 189687 to 190287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,542 DEBUG Processing 704/946 atomic regions from SNP 211111 to 211711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,603 DEBUG Processing 634/1054 atomic regions from SNP 189987 to 190587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,786 DEBUG Processing 705/946 atomic regions from SNP 211411 to 212011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,860 DEBUG Processing 635/1054 atomic regions from SNP 190287 to 190887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,029 DEBUG Processing 706/946 atomic regions from SNP 211711 to 212311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,113 DEBUG Processing 636/1054 atomic regions from SNP 190587 to 191187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,276 DEBUG Processing 707/946 atomic regions from SNP 212011 to 212611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,369 DEBUG Processing 637/1054 atomic regions from SNP 190887 to 191487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,523 DEBUG Processing 708/946 atomic regions from SNP 212311 to 212911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,643 DEBUG Processing 638/1054 atomic regions from SNP 191187 to 191787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,767 DEBUG Processing 709/946 atomic regions from SNP 212611 to 213211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,901 DEBUG Processing 639/1054 atomic regions from SNP 191487 to 192087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,012 DEBUG Processing 710/946 atomic regions from SNP 212911 to 213511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,158 DEBUG Processing 640/1054 atomic regions from SNP 191787 to 192387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,255 DEBUG Processing 711/946 atomic regions from SNP 213211 to 213811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,414 DEBUG chr6 total SNP count: 232950 2025-01-31 09:42:18,415 DEBUG chr6 length: 149736546 2025-01-31 09:42:18,415 DEBUG ----------------------------------------- 2025-01-31 09:42:18,415 INFO Processing SNPs in chr6 2025-01-31 09:42:18,423 DEBUG Processing 641/1054 atomic regions from SNP 192087 to 192687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,505 DEBUG Processing 712/946 atomic regions from SNP 213511 to 214111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,650 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 232950)] 2025-01-31 09:42:18,678 DEBUG Processing 642/1054 atomic regions from SNP 192387 to 192987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,754 DEBUG Processing 713/946 atomic regions from SNP 213811 to 214411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,809 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:18,931 DEBUG Processing 643/1054 atomic regions from SNP 192687 to 193287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,998 DEBUG Processing 714/946 atomic regions from SNP 214111 to 214711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,189 DEBUG Processing 644/1054 atomic regions from SNP 192987 to 193587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,242 DEBUG Processing 715/946 atomic regions from SNP 214411 to 215011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,447 DEBUG Processing 645/1054 atomic regions from SNP 193287 to 193887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,483 DEBUG Processing 716/946 atomic regions from SNP 214711 to 215311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,604 DEBUG Subchromosome time: 213.60601723799482, subchromosome SNPs: 236132 2025-01-31 09:42:19,605 DEBUG Estimated BADs: [0.44, 0.88, 0.44, 7.08, 0.88, 0.44, 1.77, 7.08, 0.88, 7.08, 2.65, 0.29, 1.77, 0.44] SNP counts: [21830, 33446, 10825, 924, 27619, 21908, 6649, 5027, 5400, 3917, 24539, 4539, 39000, 30509] SNP IDs counts: [21830, 33446, 10825, 924, 27619, 21908, 6649, 5027, 5400, 3917, 24539, 4539, 39000, 30509] Critical gap: 741892bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 19.15Mbp, 40.95Mbp, 51.15Mbp, 51.65Mbp, 69.12Mbp, 84.14Mbp, 87.73Mbp, 90.43Mbp, 94.43Mbp, 96.63Mbp, 110.52Mbp, 114.15Mbp, 137.05Mbp, 160.04Mbp] 2025-01-31 09:42:19,605 DEBUG chr3 time: 213.6064890489215 s 2025-01-31 09:42:19,705 DEBUG Processing 646/1054 atomic regions from SNP 193587 to 194187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,717 DEBUG Processing 717/946 atomic regions from SNP 215011 to 215611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,751 DEBUG chr3: Fitting background model for 14 segments 2025-01-31 09:42:19,953 DEBUG Processing 718/946 atomic regions from SNP 215311 to 215911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,968 DEBUG Processing 647/1054 atomic regions from SNP 193887 to 194487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,194 DEBUG Processing 719/946 atomic regions from SNP 215611 to 216211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,230 DEBUG Processing 648/1054 atomic regions from SNP 194187 to 194787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,434 DEBUG Processing 720/946 atomic regions from SNP 215911 to 216511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,493 DEBUG Processing 649/1054 atomic regions from SNP 194487 to 195087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,675 DEBUG Processing 721/946 atomic regions from SNP 216211 to 216811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,751 DEBUG Processing 650/1054 atomic regions from SNP 194787 to 195387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,918 DEBUG Processing 722/946 atomic regions from SNP 216511 to 217111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,009 DEBUG Processing 651/1054 atomic regions from SNP 195087 to 195687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,159 DEBUG Processing 723/946 atomic regions from SNP 216811 to 217411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,278 DEBUG Processing 652/1054 atomic regions from SNP 195387 to 195987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,402 DEBUG Processing 724/946 atomic regions from SNP 217111 to 217711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,543 DEBUG Processing 653/1054 atomic regions from SNP 195687 to 196287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,640 DEBUG Processing 725/946 atomic regions from SNP 217411 to 218011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,805 DEBUG Processing 654/1054 atomic regions from SNP 195987 to 196587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,875 DEBUG Processing 726/946 atomic regions from SNP 217711 to 218311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,059 DEBUG Processing 655/1054 atomic regions from SNP 196287 to 196887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,113 DEBUG Processing 727/946 atomic regions from SNP 218011 to 218611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,313 DEBUG Processing 656/1054 atomic regions from SNP 196587 to 197187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,351 DEBUG Processing 728/946 atomic regions from SNP 218311 to 218911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,566 DEBUG Processing 657/1054 atomic regions from SNP 196887 to 197487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,589 DEBUG Processing 729/946 atomic regions from SNP 218611 to 219211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,822 DEBUG Processing 658/1054 atomic regions from SNP 197187 to 197787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,826 DEBUG Processing 730/946 atomic regions from SNP 218911 to 219511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,067 DEBUG Processing 731/946 atomic regions from SNP 219211 to 219811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,087 DEBUG Processing 659/1054 atomic regions from SNP 197487 to 198087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,305 DEBUG Processing 732/946 atomic regions from SNP 219511 to 220111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,350 DEBUG Processing 660/1054 atomic regions from SNP 197787 to 198387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,539 DEBUG Processing 733/946 atomic regions from SNP 219811 to 220411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,606 DEBUG Processing 661/1054 atomic regions from SNP 198087 to 198687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,770 DEBUG Processing 734/946 atomic regions from SNP 220111 to 220711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,859 DEBUG Processing 662/1054 atomic regions from SNP 198387 to 198987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,002 DEBUG Processing 735/946 atomic regions from SNP 220411 to 221011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,113 DEBUG Processing 663/1054 atomic regions from SNP 198687 to 199287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,238 DEBUG Processing 736/946 atomic regions from SNP 220711 to 221311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,371 DEBUG Processing 664/1054 atomic regions from SNP 198987 to 199587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,475 DEBUG Processing 737/946 atomic regions from SNP 221011 to 221611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,638 DEBUG Processing 665/1054 atomic regions from SNP 199287 to 199887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,711 DEBUG Processing 738/946 atomic regions from SNP 221311 to 221911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,903 DEBUG Processing 666/1054 atomic regions from SNP 199587 to 200187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,951 DEBUG Processing 739/946 atomic regions from SNP 221611 to 222211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,170 DEBUG Processing 667/1054 atomic regions from SNP 199887 to 200487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,196 DEBUG Processing 740/946 atomic regions from SNP 221911 to 222511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,434 DEBUG Processing 668/1054 atomic regions from SNP 200187 to 200787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,434 DEBUG Processing 741/946 atomic regions from SNP 222211 to 222811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,668 DEBUG Processing 742/946 atomic regions from SNP 222511 to 223111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,694 DEBUG Processing 669/1054 atomic regions from SNP 200487 to 201087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,902 DEBUG Processing 743/946 atomic regions from SNP 222811 to 223411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,949 DEBUG Processing 670/1054 atomic regions from SNP 200787 to 201387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,136 DEBUG Processing 744/946 atomic regions from SNP 223111 to 223711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,203 DEBUG Processing 671/1054 atomic regions from SNP 201087 to 201687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,371 DEBUG Processing 745/946 atomic regions from SNP 223411 to 224011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,460 DEBUG Processing 672/1054 atomic regions from SNP 201387 to 201987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,608 DEBUG Processing 746/946 atomic regions from SNP 223711 to 224311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,723 DEBUG Processing 673/1054 atomic regions from SNP 201687 to 202287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,845 DEBUG Processing 747/946 atomic regions from SNP 224011 to 224611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,989 DEBUG Processing 674/1054 atomic regions from SNP 201987 to 202587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,085 DEBUG Processing 748/946 atomic regions from SNP 224311 to 224911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,245 DEBUG Processing 675/1054 atomic regions from SNP 202287 to 202887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,321 DEBUG Processing 749/946 atomic regions from SNP 224611 to 225211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,482 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:42:27,500 DEBUG Processing 676/1054 atomic regions from SNP 202587 to 203187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,562 DEBUG Processing 750/946 atomic regions from SNP 224911 to 225511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,761 DEBUG Processing 677/1054 atomic regions from SNP 202887 to 203487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,808 DEBUG Processing 751/946 atomic regions from SNP 225211 to 225811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,014 DEBUG Processing 678/1054 atomic regions from SNP 203187 to 203787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,053 DEBUG Processing 752/946 atomic regions from SNP 225511 to 226111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,271 DEBUG Processing 679/1054 atomic regions from SNP 203487 to 204087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,297 DEBUG Processing 753/946 atomic regions from SNP 225811 to 226411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,528 DEBUG Processing 680/1054 atomic regions from SNP 203787 to 204387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,542 DEBUG Processing 754/946 atomic regions from SNP 226111 to 226711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,782 DEBUG Processing 755/946 atomic regions from SNP 226411 to 227011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,787 DEBUG Processing 681/1054 atomic regions from SNP 204087 to 204687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,023 DEBUG Processing 756/946 atomic regions from SNP 226711 to 227311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,050 DEBUG Processing 682/1054 atomic regions from SNP 204387 to 204987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,259 DEBUG Processing 757/946 atomic regions from SNP 227011 to 227611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,310 DEBUG Processing 683/1054 atomic regions from SNP 204687 to 205287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,495 DEBUG Processing 758/946 atomic regions from SNP 227311 to 227911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,567 DEBUG Processing 684/1054 atomic regions from SNP 204987 to 205587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,730 DEBUG Processing 759/946 atomic regions from SNP 227611 to 228211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,838 DEBUG Processing 685/1054 atomic regions from SNP 205287 to 205887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,962 DEBUG Processing 760/946 atomic regions from SNP 227911 to 228511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,098 DEBUG Processing 686/1054 atomic regions from SNP 205587 to 206187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,198 DEBUG Processing 761/946 atomic regions from SNP 228211 to 228811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,367 DEBUG Processing 687/1054 atomic regions from SNP 205887 to 206487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,437 DEBUG Processing 762/946 atomic regions from SNP 228511 to 229111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,637 DEBUG Processing 688/1054 atomic regions from SNP 206187 to 206787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,675 DEBUG Processing 763/946 atomic regions from SNP 228811 to 229411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,903 DEBUG Processing 689/1054 atomic regions from SNP 206487 to 207087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,916 DEBUG Processing 764/946 atomic regions from SNP 229111 to 229711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,159 DEBUG Processing 765/946 atomic regions from SNP 229411 to 230011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,175 DEBUG Processing 690/1054 atomic regions from SNP 206787 to 207387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,400 DEBUG Processing 766/946 atomic regions from SNP 229711 to 230311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,439 DEBUG Processing 691/1054 atomic regions from SNP 207087 to 207687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,467 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:42:31,637 DEBUG Processing 767/946 atomic regions from SNP 230011 to 230611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,699 DEBUG Processing 692/1054 atomic regions from SNP 207387 to 207987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,873 DEBUG Processing 768/946 atomic regions from SNP 230311 to 230911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,980 DEBUG Processing 693/1054 atomic regions from SNP 207687 to 208287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,109 DEBUG Processing 769/946 atomic regions from SNP 230611 to 231211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,239 DEBUG Processing 694/1054 atomic regions from SNP 207987 to 208587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,350 DEBUG Processing 770/946 atomic regions from SNP 230911 to 231511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,497 DEBUG Processing 695/1054 atomic regions from SNP 208287 to 208887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,591 DEBUG Processing 771/946 atomic regions from SNP 231211 to 231811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,755 DEBUG Processing 696/1054 atomic regions from SNP 208587 to 209187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,829 DEBUG Processing 772/946 atomic regions from SNP 231511 to 232111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,028 DEBUG Processing 697/1054 atomic regions from SNP 208887 to 209487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,069 DEBUG Processing 773/946 atomic regions from SNP 231811 to 232411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,311 DEBUG Processing 774/946 atomic regions from SNP 232111 to 232711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,315 DEBUG Processing 698/1054 atomic regions from SNP 209187 to 209787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,549 DEBUG Processing 775/946 atomic regions from SNP 232411 to 233011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,577 DEBUG Processing 699/1054 atomic regions from SNP 209487 to 210087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,783 DEBUG Processing 776/946 atomic regions from SNP 232711 to 233311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,835 DEBUG Processing 700/1054 atomic regions from SNP 209787 to 210387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,019 DEBUG Processing 777/946 atomic regions from SNP 233011 to 233611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,103 DEBUG Processing 701/1054 atomic regions from SNP 210087 to 210687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,258 DEBUG Processing 778/946 atomic regions from SNP 233311 to 233911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,382 DEBUG Processing 702/1054 atomic regions from SNP 210387 to 210987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,500 DEBUG Processing 779/946 atomic regions from SNP 233611 to 234211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,656 DEBUG Processing 703/1054 atomic regions from SNP 210687 to 211287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,738 DEBUG Processing 780/946 atomic regions from SNP 233911 to 234511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,934 DEBUG Processing 704/1054 atomic regions from SNP 210987 to 211587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,971 DEBUG Processing 781/946 atomic regions from SNP 234211 to 234811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,198 DEBUG Processing 705/1054 atomic regions from SNP 211287 to 211887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,208 DEBUG Processing 782/946 atomic regions from SNP 234511 to 235111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,451 DEBUG Processing 783/946 atomic regions from SNP 234811 to 235411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,470 DEBUG Processing 706/1054 atomic regions from SNP 211587 to 212187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,694 DEBUG Processing 784/946 atomic regions from SNP 235111 to 235711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,727 DEBUG Processing 707/1054 atomic regions from SNP 211887 to 212487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,941 DEBUG Processing 785/946 atomic regions from SNP 235411 to 236011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,981 DEBUG Processing 708/1054 atomic regions from SNP 212187 to 212787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,184 DEBUG Processing 786/946 atomic regions from SNP 235711 to 236311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,233 DEBUG Processing 709/1054 atomic regions from SNP 212487 to 213087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,422 DEBUG Processing 787/946 atomic regions from SNP 236011 to 236611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,494 DEBUG Processing 710/1054 atomic regions from SNP 212787 to 213387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,655 DEBUG Processing 788/946 atomic regions from SNP 236311 to 236911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,756 DEBUG Processing 711/1054 atomic regions from SNP 213087 to 213687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,884 DEBUG Processing 789/946 atomic regions from SNP 236611 to 237211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,018 DEBUG Processing 712/1054 atomic regions from SNP 213387 to 213987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,115 DEBUG Processing 790/946 atomic regions from SNP 236911 to 237511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,275 DEBUG Processing 713/1054 atomic regions from SNP 213687 to 214287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,344 DEBUG Processing 791/946 atomic regions from SNP 237211 to 237811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,560 DEBUG Processing 714/1054 atomic regions from SNP 213987 to 214587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,575 DEBUG Processing 792/946 atomic regions from SNP 237511 to 238111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,812 DEBUG Processing 793/946 atomic regions from SNP 237811 to 238411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,843 DEBUG Processing 715/1054 atomic regions from SNP 214287 to 214887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,045 DEBUG Processing 794/946 atomic regions from SNP 238111 to 238711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,109 DEBUG Processing 716/1054 atomic regions from SNP 214587 to 215187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,280 DEBUG Processing 795/946 atomic regions from SNP 238411 to 239011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,368 DEBUG Processing 717/1054 atomic regions from SNP 214887 to 215487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,521 DEBUG Processing 796/946 atomic regions from SNP 238711 to 239311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,629 DEBUG Processing 718/1054 atomic regions from SNP 215187 to 215787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,764 DEBUG Processing 797/946 atomic regions from SNP 239011 to 239611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,887 DEBUG Processing 719/1054 atomic regions from SNP 215487 to 216087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,003 DEBUG Processing 798/946 atomic regions from SNP 239311 to 239911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,140 DEBUG Processing 720/1054 atomic regions from SNP 215787 to 216387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,245 DEBUG Processing 799/946 atomic regions from SNP 239611 to 240211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,392 DEBUG Processing 721/1054 atomic regions from SNP 216087 to 216687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,480 DEBUG Processing 800/946 atomic regions from SNP 239911 to 240511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,648 DEBUG Processing 722/1054 atomic regions from SNP 216387 to 216987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,717 DEBUG Processing 801/946 atomic regions from SNP 240211 to 240811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,906 DEBUG Processing 723/1054 atomic regions from SNP 216687 to 217287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,953 DEBUG Processing 802/946 atomic regions from SNP 240511 to 241111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,164 DEBUG Processing 724/1054 atomic regions from SNP 216987 to 217587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,189 DEBUG Processing 803/946 atomic regions from SNP 240811 to 241411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,426 DEBUG Processing 725/1054 atomic regions from SNP 217287 to 217887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,433 DEBUG Processing 804/946 atomic regions from SNP 241111 to 241711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,681 DEBUG Processing 805/946 atomic regions from SNP 241411 to 242011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,690 DEBUG Processing 726/1054 atomic regions from SNP 217587 to 218187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,928 DEBUG Processing 806/946 atomic regions from SNP 241711 to 242311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,946 DEBUG Processing 727/1054 atomic regions from SNP 217887 to 218487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,172 DEBUG Processing 807/946 atomic regions from SNP 242011 to 242611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,203 DEBUG Processing 728/1054 atomic regions from SNP 218187 to 218787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,414 DEBUG Processing 808/946 atomic regions from SNP 242311 to 242911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,463 DEBUG Processing 729/1054 atomic regions from SNP 218487 to 219087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,618 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:42:41,620 DEBUG chr7: Signal quantile: 0.993. signal threshold: 9. Best RMSEA: 0.017 2025-01-31 09:42:41,674 DEBUG Processing 809/946 atomic regions from SNP 242611 to 243211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,724 DEBUG Processing 730/1054 atomic regions from SNP 218787 to 219387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,947 DEBUG Processing 810/946 atomic regions from SNP 242911 to 243511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,986 DEBUG Processing 731/1054 atomic regions from SNP 219087 to 219687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,187 DEBUG Processing 811/946 atomic regions from SNP 243211 to 243811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,244 DEBUG Processing 732/1054 atomic regions from SNP 219387 to 219987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,435 DEBUG Processing 812/946 atomic regions from SNP 243511 to 244111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,501 DEBUG Processing 733/1054 atomic regions from SNP 219687 to 220287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,680 DEBUG Processing 813/946 atomic regions from SNP 243811 to 244411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,755 DEBUG Processing 734/1054 atomic regions from SNP 219987 to 220587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,922 DEBUG Processing 814/946 atomic regions from SNP 244111 to 244711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,010 DEBUG Processing 735/1054 atomic regions from SNP 220287 to 220887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,168 DEBUG Processing 815/946 atomic regions from SNP 244411 to 245011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,267 DEBUG Processing 736/1054 atomic regions from SNP 220587 to 221187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,413 DEBUG Processing 816/946 atomic regions from SNP 244711 to 245311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,523 DEBUG Processing 737/1054 atomic regions from SNP 220887 to 221487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,658 DEBUG Processing 817/946 atomic regions from SNP 245011 to 245611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,780 DEBUG Processing 738/1054 atomic regions from SNP 221187 to 221787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,862 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:42:43,864 DEBUG chr10: Signal quantile: 0.994. signal threshold: 9. Best RMSEA: 0.020 2025-01-31 09:42:43,908 DEBUG Processing 818/946 atomic regions from SNP 245311 to 245911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,040 DEBUG Processing 739/1054 atomic regions from SNP 221487 to 222087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,090 DEBUG chr7 total SNP count: 215425 2025-01-31 09:42:44,090 DEBUG chr7 length: 145441459 2025-01-31 09:42:44,091 DEBUG ----------------------------------------- 2025-01-31 09:42:44,091 INFO Processing SNPs in chr7 2025-01-31 09:42:44,161 DEBUG Processing 819/946 atomic regions from SNP 245611 to 246211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,300 DEBUG Processing 740/1054 atomic regions from SNP 221787 to 222387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,411 DEBUG Processing 820/946 atomic regions from SNP 245911 to 246511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,437 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 6247), (6247, 18664), (18664, 18673), (18673, 215425)] 2025-01-31 09:42:44,534 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:44,562 DEBUG Processing 741/1054 atomic regions from SNP 222087 to 222687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,656 DEBUG Processing 821/946 atomic regions from SNP 246211 to 246811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,825 DEBUG Processing 742/1054 atomic regions from SNP 222387 to 222987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,902 DEBUG Processing 822/946 atomic regions from SNP 246511 to 247111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,079 DEBUG Processing 743/1054 atomic regions from SNP 222687 to 223287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,156 DEBUG Processing 823/946 atomic regions from SNP 246811 to 247411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,267 DEBUG Segmenting atomic regions: 2025-01-31 09:42:45,330 DEBUG Processing 744/1054 atomic regions from SNP 222987 to 223587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,362 DEBUG Processing 1/19 atomic regions from SNP 0 to 613 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:45,417 DEBUG Processing 824/946 atomic regions from SNP 247111 to 247711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,571 DEBUG Processing 2/19 atomic regions from SNP 313 to 926 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:45,590 DEBUG Processing 745/1054 atomic regions from SNP 223287 to 223887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,667 DEBUG Processing 825/946 atomic regions from SNP 247411 to 248011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,775 DEBUG Processing 3/19 atomic regions from SNP 626 to 1239 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:45,845 DEBUG Processing 746/1054 atomic regions from SNP 223587 to 224187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,914 DEBUG Processing 826/946 atomic regions from SNP 247711 to 248311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,009 DEBUG Processing 4/19 atomic regions from SNP 939 to 1552 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:46,077 DEBUG chr10 total SNP count: 205538 2025-01-31 09:42:46,077 DEBUG chr10 length: 130694993 2025-01-31 09:42:46,077 DEBUG ----------------------------------------- 2025-01-31 09:42:46,077 INFO Processing SNPs in chr10 2025-01-31 09:42:46,111 DEBUG Processing 747/1054 atomic regions from SNP 223887 to 224487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,164 DEBUG Processing 827/946 atomic regions from SNP 248011 to 248611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,219 DEBUG Processing 5/19 atomic regions from SNP 1252 to 1865 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:46,288 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 205538)] 2025-01-31 09:42:46,354 DEBUG Segmenting atomic regions: 2025-01-31 09:42:46,384 DEBUG Processing 748/1054 atomic regions from SNP 224187 to 224787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,414 DEBUG Processing 828/946 atomic regions from SNP 248311 to 248911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,431 DEBUG Processing 6/19 atomic regions from SNP 1565 to 2178 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:46,431 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:46,458 DEBUG Processing 1/775 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:46,647 DEBUG Processing 749/1054 atomic regions from SNP 224487 to 225087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,653 DEBUG Processing 7/19 atomic regions from SNP 1878 to 2491 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:46,658 DEBUG Processing 829/946 atomic regions from SNP 248611 to 249211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,675 DEBUG Processing 2/775 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:46,876 DEBUG Processing 8/19 atomic regions from SNP 2191 to 2804 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:46,897 DEBUG Processing 3/775 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:46,902 DEBUG Processing 830/946 atomic regions from SNP 248911 to 249511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,910 DEBUG Processing 750/1054 atomic regions from SNP 224787 to 225387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,113 DEBUG Processing 9/19 atomic regions from SNP 2504 to 3117 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:47,119 DEBUG Processing 4/775 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:47,148 DEBUG Processing 831/946 atomic regions from SNP 249211 to 249811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,175 DEBUG Processing 751/1054 atomic regions from SNP 225087 to 225687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,335 DEBUG Processing 5/775 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:47,346 DEBUG Processing 10/19 atomic regions from SNP 2817 to 3430 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:47,394 DEBUG Processing 832/946 atomic regions from SNP 249511 to 250111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,436 DEBUG Processing 752/1054 atomic regions from SNP 225387 to 225987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,552 DEBUG Processing 6/775 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:47,563 DEBUG Processing 11/19 atomic regions from SNP 3130 to 3743 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:47,643 DEBUG Processing 833/946 atomic regions from SNP 249811 to 250411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,701 DEBUG Processing 753/1054 atomic regions from SNP 225687 to 226287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,770 DEBUG Processing 7/775 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:47,771 DEBUG Processing 12/19 atomic regions from SNP 3443 to 4056 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:47,887 DEBUG Processing 834/946 atomic regions from SNP 250111 to 250711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,968 DEBUG Processing 754/1054 atomic regions from SNP 225987 to 226587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,985 DEBUG Processing 13/19 atomic regions from SNP 3756 to 4369 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:47,995 DEBUG Processing 8/775 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:48,126 DEBUG Processing 835/946 atomic regions from SNP 250411 to 251011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,127 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:42:48,196 DEBUG Processing 14/19 atomic regions from SNP 4069 to 4682 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:48,210 DEBUG Processing 9/775 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:48,228 DEBUG Processing 755/1054 atomic regions from SNP 226287 to 226887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,367 DEBUG Processing 836/946 atomic regions from SNP 250711 to 251311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,427 DEBUG Processing 15/19 atomic regions from SNP 4382 to 4995 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:48,432 DEBUG Processing 10/775 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:48,493 DEBUG Processing 756/1054 atomic regions from SNP 226587 to 227187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,620 DEBUG Processing 837/946 atomic regions from SNP 251011 to 251611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,651 DEBUG Processing 11/775 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:48,652 DEBUG Processing 16/19 atomic regions from SNP 4695 to 5308 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:48,761 DEBUG Processing 757/1054 atomic regions from SNP 226887 to 227487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,869 DEBUG Processing 17/19 atomic regions from SNP 5008 to 5621 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:48,869 DEBUG Processing 12/775 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:48,872 DEBUG Processing 838/946 atomic regions from SNP 251311 to 251911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,033 DEBUG Processing 758/1054 atomic regions from SNP 227187 to 227787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,087 DEBUG Processing 13/775 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:49,104 DEBUG Processing 18/19 atomic regions from SNP 5321 to 5934 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:49,120 DEBUG Processing 839/946 atomic regions from SNP 251611 to 252211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,307 DEBUG Processing 759/1054 atomic regions from SNP 227487 to 228087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,312 DEBUG Processing 14/775 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:49,319 DEBUG Processing 19/19 atomic regions from SNP 5634 to 6246 for chr7 (subchromosome 1 of 4). 2025-01-31 09:42:49,364 DEBUG Processing 840/946 atomic regions from SNP 251911 to 252511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,438 DEBUG Unique SNPs positions in subchromosome 1: 6247 2025-01-31 09:42:49,446 DEBUG Subchromosome time: 4.912262798985466, subchromosome SNPs: 6247 2025-01-31 09:42:49,450 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:49,540 DEBUG Processing 15/775 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:49,578 DEBUG Processing 760/1054 atomic regions from SNP 227787 to 228387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,620 DEBUG Processing 841/946 atomic regions from SNP 252211 to 252811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,769 DEBUG Processing 16/775 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:49,841 DEBUG Processing 761/1054 atomic regions from SNP 228087 to 228687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,874 DEBUG Processing 842/946 atomic regions from SNP 252511 to 253111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,994 DEBUG Processing 17/775 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:50,106 DEBUG Processing 762/1054 atomic regions from SNP 228387 to 228987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,117 DEBUG Processing 843/946 atomic regions from SNP 252811 to 253411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,221 DEBUG Processing 18/775 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:50,363 DEBUG Processing 844/946 atomic regions from SNP 253111 to 253711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,368 DEBUG Processing 763/1054 atomic regions from SNP 228687 to 229287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,448 DEBUG Processing 19/775 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:50,608 DEBUG Processing 845/946 atomic regions from SNP 253411 to 254011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,629 DEBUG Processing 764/1054 atomic regions from SNP 228987 to 229587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,675 DEBUG Processing 20/775 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:50,849 DEBUG Processing 846/946 atomic regions from SNP 253711 to 254311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,886 DEBUG Processing 765/1054 atomic regions from SNP 229287 to 229887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,900 DEBUG Processing 21/775 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:50,930 DEBUG Segmenting atomic regions: 2025-01-31 09:42:51,027 DEBUG Processing 1/40 atomic regions from SNP 0 to 603 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:51,091 DEBUG Processing 847/946 atomic regions from SNP 254011 to 254611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,129 DEBUG Processing 22/775 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:51,155 DEBUG Processing 766/1054 atomic regions from SNP 229587 to 230187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,236 DEBUG Processing 2/40 atomic regions from SNP 303 to 906 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:51,332 DEBUG Processing 848/946 atomic regions from SNP 254311 to 254911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,349 DEBUG Processing 23/775 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:51,424 DEBUG Processing 767/1054 atomic regions from SNP 229887 to 230487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,446 DEBUG Processing 3/40 atomic regions from SNP 606 to 1209 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:51,562 DEBUG Processing 24/775 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:51,571 DEBUG Processing 849/946 atomic regions from SNP 254611 to 255211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,658 DEBUG Processing 4/40 atomic regions from SNP 909 to 1512 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:51,691 DEBUG Processing 768/1054 atomic regions from SNP 230187 to 230787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,775 DEBUG Processing 25/775 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:51,807 DEBUG Processing 850/946 atomic regions from SNP 254911 to 255511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,877 DEBUG Processing 5/40 atomic regions from SNP 1212 to 1815 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:51,964 DEBUG Processing 769/1054 atomic regions from SNP 230487 to 231087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,994 DEBUG Processing 26/775 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:52,048 DEBUG Processing 851/946 atomic regions from SNP 255211 to 255811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,092 DEBUG Processing 6/40 atomic regions from SNP 1515 to 2118 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:52,221 DEBUG Processing 27/775 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:52,238 DEBUG Processing 770/1054 atomic regions from SNP 230787 to 231387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,290 DEBUG Processing 852/946 atomic regions from SNP 255511 to 256111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,304 DEBUG Processing 7/40 atomic regions from SNP 1818 to 2421 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:52,449 DEBUG Processing 28/775 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:52,506 DEBUG Processing 771/1054 atomic regions from SNP 231087 to 231687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,517 DEBUG Processing 8/40 atomic regions from SNP 2121 to 2724 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:52,535 DEBUG Processing 853/946 atomic regions from SNP 255811 to 256411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,676 DEBUG Processing 29/775 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:52,728 DEBUG Processing 9/40 atomic regions from SNP 2424 to 3027 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:52,776 DEBUG Processing 772/1054 atomic regions from SNP 231387 to 231987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,783 DEBUG Processing 854/946 atomic regions from SNP 256111 to 256711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,904 DEBUG Processing 30/775 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:52,938 DEBUG Processing 10/40 atomic regions from SNP 2727 to 3330 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:53,031 DEBUG Processing 855/946 atomic regions from SNP 256411 to 257011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,044 DEBUG Processing 773/1054 atomic regions from SNP 231687 to 232287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,138 DEBUG Processing 31/775 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:53,162 DEBUG Processing 11/40 atomic regions from SNP 3030 to 3633 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:53,279 DEBUG Processing 856/946 atomic regions from SNP 256711 to 257311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,309 DEBUG Processing 774/1054 atomic regions from SNP 231987 to 232587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,370 DEBUG Processing 32/775 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:53,391 DEBUG Processing 12/40 atomic regions from SNP 3333 to 3936 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:53,522 DEBUG Processing 857/946 atomic regions from SNP 257011 to 257611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,572 DEBUG Processing 775/1054 atomic regions from SNP 232287 to 232887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,600 DEBUG Processing 33/775 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:53,603 DEBUG Processing 13/40 atomic regions from SNP 3636 to 4239 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:53,763 DEBUG Processing 858/946 atomic regions from SNP 257311 to 257911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,816 DEBUG Processing 14/40 atomic regions from SNP 3939 to 4542 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:53,827 DEBUG Processing 34/775 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:53,835 DEBUG Processing 776/1054 atomic regions from SNP 232587 to 233187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,006 DEBUG Processing 859/946 atomic regions from SNP 257611 to 258211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,025 DEBUG Processing 15/40 atomic regions from SNP 4242 to 4845 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:54,054 DEBUG Processing 35/775 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:54,105 DEBUG Processing 777/1054 atomic regions from SNP 232887 to 233487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,237 DEBUG Processing 16/40 atomic regions from SNP 4545 to 5148 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:54,253 DEBUG Processing 860/946 atomic regions from SNP 257911 to 258511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,276 DEBUG Processing 36/775 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:54,375 DEBUG Processing 778/1054 atomic regions from SNP 233187 to 233787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,450 DEBUG Processing 17/40 atomic regions from SNP 4848 to 5451 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:54,489 DEBUG Processing 37/775 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:54,502 DEBUG Processing 861/946 atomic regions from SNP 258211 to 258811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,642 DEBUG Processing 779/1054 atomic regions from SNP 233487 to 234087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,664 DEBUG Processing 18/40 atomic regions from SNP 5151 to 5754 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:54,707 DEBUG Processing 38/775 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:54,750 DEBUG Processing 862/946 atomic regions from SNP 258511 to 259111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,876 DEBUG Processing 19/40 atomic regions from SNP 5454 to 6057 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:54,908 DEBUG Processing 780/1054 atomic regions from SNP 233787 to 234387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,928 DEBUG Processing 39/775 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:54,998 DEBUG Processing 863/946 atomic regions from SNP 258811 to 259411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,080 DEBUG Processing 20/40 atomic regions from SNP 5757 to 6360 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:55,151 DEBUG Processing 40/775 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:55,172 DEBUG Processing 781/1054 atomic regions from SNP 234087 to 234687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,246 DEBUG Processing 864/946 atomic regions from SNP 259111 to 259711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,289 DEBUG Processing 21/40 atomic regions from SNP 6060 to 6663 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:55,369 DEBUG Processing 41/775 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:55,433 DEBUG Processing 782/1054 atomic regions from SNP 234387 to 234987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,499 DEBUG Processing 865/946 atomic regions from SNP 259411 to 260011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,512 DEBUG Processing 22/40 atomic regions from SNP 6363 to 6966 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:55,585 DEBUG Processing 42/775 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:55,693 DEBUG Processing 783/1054 atomic regions from SNP 234687 to 235287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,749 DEBUG Processing 866/946 atomic regions from SNP 259711 to 260311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,752 DEBUG Processing 23/40 atomic regions from SNP 6666 to 7269 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:55,809 DEBUG Processing 43/775 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:55,954 DEBUG Processing 784/1054 atomic regions from SNP 234987 to 235587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,995 DEBUG Processing 867/946 atomic regions from SNP 260011 to 260611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,004 DEBUG Processing 24/40 atomic regions from SNP 6969 to 7572 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:56,032 DEBUG Processing 44/775 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:56,215 DEBUG Processing 785/1054 atomic regions from SNP 235287 to 235887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,225 DEBUG Processing 25/40 atomic regions from SNP 7272 to 7875 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:56,238 DEBUG Processing 868/946 atomic regions from SNP 260311 to 260911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,258 DEBUG Processing 45/775 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:56,433 DEBUG Processing 26/40 atomic regions from SNP 7575 to 8178 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:56,474 DEBUG Processing 786/1054 atomic regions from SNP 235587 to 236187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,477 DEBUG Processing 46/775 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:56,482 DEBUG Processing 869/946 atomic regions from SNP 260611 to 261211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,654 DEBUG Processing 27/40 atomic regions from SNP 7878 to 8481 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:56,694 DEBUG Processing 47/775 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:56,724 DEBUG Processing 870/946 atomic regions from SNP 260911 to 261511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,733 DEBUG Processing 787/1054 atomic regions from SNP 235887 to 236487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,865 DEBUG Processing 28/40 atomic regions from SNP 8181 to 8784 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:56,904 DEBUG Processing 48/775 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:56,965 DEBUG Processing 871/946 atomic regions from SNP 261211 to 261811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,994 DEBUG Processing 788/1054 atomic regions from SNP 236187 to 236787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,074 DEBUG Processing 29/40 atomic regions from SNP 8484 to 9087 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:57,116 DEBUG Processing 49/775 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:57,208 DEBUG Processing 872/946 atomic regions from SNP 261511 to 262111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,257 DEBUG Processing 789/1054 atomic regions from SNP 236487 to 237087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,287 DEBUG Processing 30/40 atomic regions from SNP 8787 to 9390 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:57,327 DEBUG Processing 50/775 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:57,452 DEBUG Processing 873/946 atomic regions from SNP 261811 to 262411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,500 DEBUG Processing 31/40 atomic regions from SNP 9090 to 9693 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:57,526 DEBUG Processing 790/1054 atomic regions from SNP 236787 to 237387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,548 DEBUG Processing 51/775 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:57,701 DEBUG Processing 874/946 atomic regions from SNP 262111 to 262711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,719 DEBUG Processing 32/40 atomic regions from SNP 9393 to 9996 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:57,773 DEBUG Processing 52/775 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:57,792 DEBUG Processing 791/1054 atomic regions from SNP 237087 to 237687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,937 DEBUG Processing 33/40 atomic regions from SNP 9696 to 10299 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:57,953 DEBUG Processing 875/946 atomic regions from SNP 262411 to 263011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,000 DEBUG Processing 53/775 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:58,066 DEBUG Processing 792/1054 atomic regions from SNP 237387 to 237987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,151 DEBUG Processing 34/40 atomic regions from SNP 9999 to 10602 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:58,212 DEBUG Processing 876/946 atomic regions from SNP 262711 to 263311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,220 DEBUG Processing 54/775 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:58,335 DEBUG Processing 793/1054 atomic regions from SNP 237687 to 238287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,361 DEBUG Processing 35/40 atomic regions from SNP 10302 to 10905 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:58,443 DEBUG Processing 55/775 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:58,473 DEBUG Processing 877/946 atomic regions from SNP 263011 to 263611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,598 DEBUG Processing 794/1054 atomic regions from SNP 237987 to 238587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,602 DEBUG Processing 36/40 atomic regions from SNP 10605 to 11208 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:58,668 DEBUG Processing 56/775 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:58,724 DEBUG Processing 878/946 atomic regions from SNP 263311 to 263911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,850 DEBUG Processing 37/40 atomic regions from SNP 10908 to 11510 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:58,862 DEBUG Processing 795/1054 atomic regions from SNP 238287 to 238887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,890 DEBUG Processing 57/775 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:58,966 DEBUG Processing 879/946 atomic regions from SNP 263611 to 264211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,094 DEBUG Processing 38/40 atomic regions from SNP 11210 to 11812 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:59,114 DEBUG Processing 58/775 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:59,129 DEBUG Processing 796/1054 atomic regions from SNP 238587 to 239187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,208 DEBUG Processing 880/946 atomic regions from SNP 263911 to 264511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,331 DEBUG Processing 39/40 atomic regions from SNP 11512 to 12114 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:59,338 DEBUG Processing 59/775 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:59,397 DEBUG Processing 797/1054 atomic regions from SNP 238887 to 239487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,448 DEBUG Processing 881/946 atomic regions from SNP 264211 to 264811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,557 DEBUG Processing 60/775 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:59,579 DEBUG Processing 40/40 atomic regions from SNP 11814 to 12416 for chr7 (subchromosome 2 of 4). 2025-01-31 09:42:59,670 DEBUG Processing 798/1054 atomic regions from SNP 239187 to 239787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,690 DEBUG Processing 882/946 atomic regions from SNP 264511 to 265111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,698 DEBUG Unique SNPs positions in subchromosome 2: 12417 2025-01-31 09:42:59,717 DEBUG Subchromosome time: 10.266811258043163, subchromosome SNPs: 12417 2025-01-31 09:42:59,767 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:59,774 DEBUG Processing 61/775 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:42:59,936 DEBUG Processing 883/946 atomic regions from SNP 264811 to 265411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,944 DEBUG Processing 799/1054 atomic regions from SNP 239487 to 240087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,997 DEBUG Processing 62/775 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:00,189 DEBUG Processing 884/946 atomic regions from SNP 265111 to 265711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,217 DEBUG Processing 800/1054 atomic regions from SNP 239787 to 240387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,219 DEBUG Processing 63/775 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:00,444 DEBUG Processing 64/775 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:00,463 DEBUG Processing 885/946 atomic regions from SNP 265411 to 266011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,486 DEBUG Processing 801/1054 atomic regions from SNP 240087 to 240687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,667 DEBUG Processing 65/775 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:00,726 DEBUG Processing 886/946 atomic regions from SNP 265711 to 266311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,753 DEBUG Processing 802/1054 atomic regions from SNP 240387 to 240987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,886 DEBUG Processing 66/775 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:00,906 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:43:00,907 DEBUG chr8: Signal quantile: 0.994. signal threshold: 9. Best RMSEA: 0.021 2025-01-31 09:43:00,973 DEBUG Processing 887/946 atomic regions from SNP 266011 to 266611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,023 DEBUG Processing 803/1054 atomic regions from SNP 240687 to 241287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,110 DEBUG Processing 67/775 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:01,217 DEBUG Processing 888/946 atomic regions from SNP 266311 to 266911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,294 DEBUG Processing 804/1054 atomic regions from SNP 240987 to 241587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,334 DEBUG Processing 68/775 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:01,459 DEBUG Processing 889/946 atomic regions from SNP 266611 to 267211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,560 DEBUG Processing 69/775 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:01,568 DEBUG Processing 805/1054 atomic regions from SNP 241287 to 241887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,703 DEBUG Processing 890/946 atomic regions from SNP 266911 to 267511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,785 DEBUG Processing 70/775 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:01,833 DEBUG Processing 806/1054 atomic regions from SNP 241587 to 242187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,946 DEBUG Processing 891/946 atomic regions from SNP 267211 to 267811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,004 DEBUG Processing 71/775 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:02,100 DEBUG Processing 807/1054 atomic regions from SNP 241887 to 242487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,201 DEBUG Processing 892/946 atomic regions from SNP 267511 to 268111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,221 DEBUG Processing 72/775 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:02,372 DEBUG Processing 808/1054 atomic regions from SNP 242187 to 242787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,453 DEBUG Processing 73/775 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:02,459 DEBUG Processing 893/946 atomic regions from SNP 267811 to 268411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,640 DEBUG Processing 809/1054 atomic regions from SNP 242487 to 243087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,680 DEBUG Processing 74/775 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:02,700 DEBUG Processing 894/946 atomic regions from SNP 268111 to 268711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,908 DEBUG Processing 810/1054 atomic regions from SNP 242787 to 243387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,909 DEBUG Processing 75/775 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:02,942 DEBUG Processing 895/946 atomic regions from SNP 268411 to 269011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,141 DEBUG Processing 76/775 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:03,185 DEBUG Processing 811/1054 atomic regions from SNP 243087 to 243687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,190 DEBUG Processing 896/946 atomic regions from SNP 268711 to 269311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,228 DEBUG chr8 total SNP count: 199782 2025-01-31 09:43:03,229 DEBUG chr8 length: 129401213 2025-01-31 09:43:03,229 DEBUG ----------------------------------------- 2025-01-31 09:43:03,229 INFO Processing SNPs in chr8 2025-01-31 09:43:03,362 DEBUG Processing 77/775 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:03,426 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 199782)] 2025-01-31 09:43:03,430 DEBUG Processing 897/946 atomic regions from SNP 269011 to 269611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,457 DEBUG Processing 812/1054 atomic regions from SNP 243387 to 243987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,562 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:03,578 DEBUG Processing 78/775 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:03,674 DEBUG Processing 898/946 atomic regions from SNP 269311 to 269911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,722 DEBUG Processing 813/1054 atomic regions from SNP 243687 to 244287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,793 DEBUG Processing 79/775 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:03,936 DEBUG Processing 899/946 atomic regions from SNP 269611 to 270211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,984 DEBUG Processing 814/1054 atomic regions from SNP 243987 to 244587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,014 DEBUG Processing 80/775 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:04,190 DEBUG Processing 900/946 atomic regions from SNP 269911 to 270511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,244 DEBUG Processing 81/775 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:04,273 DEBUG Processing 815/1054 atomic regions from SNP 244287 to 244887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,427 DEBUG Processing 901/946 atomic regions from SNP 270211 to 270811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,468 DEBUG Processing 82/775 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:04,555 DEBUG Processing 816/1054 atomic regions from SNP 244587 to 245187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,680 DEBUG Processing 902/946 atomic regions from SNP 270511 to 271111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,687 DEBUG Processing 83/775 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:04,821 DEBUG Processing 817/1054 atomic regions from SNP 244887 to 245487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,900 DEBUG Processing 84/775 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:04,948 DEBUG Processing 903/946 atomic regions from SNP 270811 to 271411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,081 DEBUG Processing 818/1054 atomic regions from SNP 245187 to 245787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,115 DEBUG Processing 85/775 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:05,201 DEBUG Processing 904/946 atomic regions from SNP 271111 to 271711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,331 DEBUG Processing 86/775 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:05,341 DEBUG Processing 819/1054 atomic regions from SNP 245487 to 246087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,454 DEBUG Processing 905/946 atomic regions from SNP 271411 to 272011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,547 DEBUG Processing 87/775 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:05,604 DEBUG Processing 820/1054 atomic regions from SNP 245787 to 246387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,708 DEBUG Processing 906/946 atomic regions from SNP 271711 to 272311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,761 DEBUG Processing 88/775 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:05,891 DEBUG Processing 821/1054 atomic regions from SNP 246087 to 246687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,953 DEBUG Processing 907/946 atomic regions from SNP 272011 to 272611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,975 DEBUG Processing 89/775 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:06,166 DEBUG Processing 822/1054 atomic regions from SNP 246387 to 246987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,194 DEBUG Processing 90/775 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:06,202 DEBUG Processing 908/946 atomic regions from SNP 272311 to 272911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,416 DEBUG Processing 91/775 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:06,431 DEBUG Processing 823/1054 atomic regions from SNP 246687 to 247287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,451 DEBUG Processing 909/946 atomic regions from SNP 272611 to 273211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,635 DEBUG Processing 92/775 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:06,694 DEBUG Processing 910/946 atomic regions from SNP 272911 to 273511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,696 DEBUG Processing 824/1054 atomic regions from SNP 246987 to 247587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,848 DEBUG Processing 93/775 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:06,933 DEBUG Processing 911/946 atomic regions from SNP 273211 to 273811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,969 DEBUG Processing 825/1054 atomic regions from SNP 247287 to 247887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,061 DEBUG Processing 94/775 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:07,169 DEBUG Processing 912/946 atomic regions from SNP 273511 to 274111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,233 DEBUG Processing 826/1054 atomic regions from SNP 247587 to 248187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,276 DEBUG Processing 95/775 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:07,402 DEBUG Processing 913/946 atomic regions from SNP 273811 to 274411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,492 DEBUG Processing 96/775 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:07,504 DEBUG Processing 827/1054 atomic regions from SNP 247887 to 248487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,638 DEBUG Processing 914/946 atomic regions from SNP 274111 to 274711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,710 DEBUG Processing 97/775 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:07,767 DEBUG Processing 828/1054 atomic regions from SNP 248187 to 248787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,871 DEBUG Processing 915/946 atomic regions from SNP 274411 to 275011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,929 DEBUG Processing 98/775 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:08,028 DEBUG Processing 829/1054 atomic regions from SNP 248487 to 249087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,106 DEBUG Processing 916/946 atomic regions from SNP 274711 to 275311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,156 DEBUG Processing 99/775 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:08,298 DEBUG Processing 830/1054 atomic regions from SNP 248787 to 249387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,344 DEBUG Processing 917/946 atomic regions from SNP 275011 to 275611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,376 DEBUG Processing 100/775 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:08,553 DEBUG Processing 831/1054 atomic regions from SNP 249087 to 249687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,585 DEBUG Processing 918/946 atomic regions from SNP 275311 to 275911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,596 DEBUG Processing 101/775 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:08,806 DEBUG Processing 832/1054 atomic regions from SNP 249387 to 249987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,812 DEBUG Processing 102/775 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:08,847 DEBUG Processing 919/946 atomic regions from SNP 275611 to 276211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,025 DEBUG Processing 103/775 atomic regions from SNP 30702 to 31303 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:09,061 DEBUG Processing 833/1054 atomic regions from SNP 249687 to 250287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,089 DEBUG Processing 920/946 atomic regions from SNP 275911 to 276511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,234 DEBUG Processing 104/775 atomic regions from SNP 31003 to 31604 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:09,318 DEBUG Processing 834/1054 atomic regions from SNP 249987 to 250587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,330 DEBUG Processing 921/946 atomic regions from SNP 276211 to 276811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,449 DEBUG Processing 105/775 atomic regions from SNP 31304 to 31905 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:09,566 DEBUG Processing 922/946 atomic regions from SNP 276511 to 277111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,575 DEBUG Processing 835/1054 atomic regions from SNP 250287 to 250887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,670 DEBUG Processing 106/775 atomic regions from SNP 31605 to 32206 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:09,801 DEBUG Processing 923/946 atomic regions from SNP 276811 to 277411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,830 DEBUG Processing 836/1054 atomic regions from SNP 250587 to 251187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,894 DEBUG Processing 107/775 atomic regions from SNP 31906 to 32507 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:10,037 DEBUG Processing 924/946 atomic regions from SNP 277111 to 277711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,088 DEBUG Processing 837/1054 atomic regions from SNP 250887 to 251487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,119 DEBUG Processing 108/775 atomic regions from SNP 32207 to 32808 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:10,278 DEBUG Processing 925/946 atomic regions from SNP 277411 to 278011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,343 DEBUG Processing 109/775 atomic regions from SNP 32508 to 33109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:10,352 DEBUG Processing 838/1054 atomic regions from SNP 251187 to 251787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,522 DEBUG Processing 926/946 atomic regions from SNP 277711 to 278311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,562 DEBUG Processing 110/775 atomic regions from SNP 32809 to 33410 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:10,616 DEBUG Processing 839/1054 atomic regions from SNP 251487 to 252087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,764 DEBUG Processing 927/946 atomic regions from SNP 278011 to 278611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,776 DEBUG Processing 111/775 atomic regions from SNP 33110 to 33711 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:10,879 DEBUG Processing 840/1054 atomic regions from SNP 251787 to 252387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,991 DEBUG Processing 112/775 atomic regions from SNP 33411 to 34012 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:11,008 DEBUG Processing 928/946 atomic regions from SNP 278311 to 278911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,136 DEBUG Processing 841/1054 atomic regions from SNP 252087 to 252687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,211 DEBUG Processing 113/775 atomic regions from SNP 33712 to 34313 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:11,252 DEBUG Processing 929/946 atomic regions from SNP 278611 to 279211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,393 DEBUG Processing 842/1054 atomic regions from SNP 252387 to 252987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,396 DEBUG Segmenting atomic regions: 2025-01-31 09:43:11,432 DEBUG Processing 114/775 atomic regions from SNP 34013 to 34614 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:11,487 DEBUG Processing 1/684 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:11,495 DEBUG Processing 930/946 atomic regions from SNP 278911 to 279511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,649 DEBUG Processing 843/1054 atomic regions from SNP 252687 to 253287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,650 DEBUG Processing 115/775 atomic regions from SNP 34314 to 34915 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:11,690 DEBUG Processing 2/684 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:11,743 DEBUG Processing 931/946 atomic regions from SNP 279211 to 279811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,865 DEBUG Processing 116/775 atomic regions from SNP 34615 to 35216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:11,887 DEBUG Processing 3/684 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:11,909 DEBUG Processing 844/1054 atomic regions from SNP 252987 to 253587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,007 DEBUG Processing 932/946 atomic regions from SNP 279511 to 280111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,079 DEBUG Processing 117/775 atomic regions from SNP 34916 to 35517 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:12,085 DEBUG Processing 4/684 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:12,174 DEBUG Processing 845/1054 atomic regions from SNP 253287 to 253887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,249 DEBUG Processing 933/946 atomic regions from SNP 279811 to 280411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,291 DEBUG Processing 5/684 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:12,294 DEBUG Processing 118/775 atomic regions from SNP 35217 to 35818 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:12,440 DEBUG Processing 846/1054 atomic regions from SNP 253587 to 254187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,489 DEBUG Processing 934/946 atomic regions from SNP 280111 to 280711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,494 DEBUG Processing 6/684 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:12,509 DEBUG Processing 119/775 atomic regions from SNP 35518 to 36119 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:12,696 DEBUG Processing 7/684 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:12,704 DEBUG Processing 847/1054 atomic regions from SNP 253887 to 254487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,728 DEBUG Processing 120/775 atomic regions from SNP 35819 to 36420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:12,733 DEBUG Processing 935/946 atomic regions from SNP 280411 to 281011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,899 DEBUG Processing 8/684 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:12,948 DEBUG Processing 121/775 atomic regions from SNP 36120 to 36721 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:12,967 DEBUG Processing 848/1054 atomic regions from SNP 254187 to 254787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,976 DEBUG Processing 936/946 atomic regions from SNP 280711 to 281311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,101 DEBUG Processing 9/684 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:13,170 DEBUG Processing 122/775 atomic regions from SNP 36421 to 37022 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:13,219 DEBUG Processing 937/946 atomic regions from SNP 281011 to 281611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,230 DEBUG Processing 849/1054 atomic regions from SNP 254487 to 255087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,301 DEBUG Processing 10/684 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:13,389 DEBUG Processing 123/775 atomic regions from SNP 36722 to 37323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:13,465 DEBUG Processing 938/946 atomic regions from SNP 281311 to 281911 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,494 DEBUG Processing 850/1054 atomic regions from SNP 254787 to 255387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,500 DEBUG Processing 11/684 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:13,608 DEBUG Processing 124/775 atomic regions from SNP 37023 to 37624 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:13,698 DEBUG Processing 12/684 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:13,704 DEBUG Processing 939/946 atomic regions from SNP 281611 to 282211 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,752 DEBUG Processing 851/1054 atomic regions from SNP 255087 to 255687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,826 DEBUG Processing 125/775 atomic regions from SNP 37324 to 37925 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:13,902 DEBUG Processing 13/684 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:13,948 DEBUG Processing 940/946 atomic regions from SNP 281911 to 282511 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,016 DEBUG Processing 852/1054 atomic regions from SNP 255387 to 255987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,044 DEBUG Processing 126/775 atomic regions from SNP 37625 to 38226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:14,110 DEBUG Processing 14/684 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:14,189 DEBUG Processing 941/946 atomic regions from SNP 282211 to 282811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,263 DEBUG Processing 127/775 atomic regions from SNP 37926 to 38527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:14,293 DEBUG Processing 853/1054 atomic regions from SNP 255687 to 256287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,317 DEBUG Processing 15/684 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:14,436 DEBUG Processing 942/946 atomic regions from SNP 282511 to 283111 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,481 DEBUG Processing 128/775 atomic regions from SNP 38227 to 38828 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:14,548 DEBUG Processing 16/684 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:14,557 DEBUG Processing 854/1054 atomic regions from SNP 255987 to 256587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,678 DEBUG Processing 943/946 atomic regions from SNP 282811 to 283411 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,700 DEBUG Processing 129/775 atomic regions from SNP 38528 to 39129 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:14,760 DEBUG Processing 17/684 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:14,817 DEBUG Processing 855/1054 atomic regions from SNP 256287 to 256887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,915 DEBUG Processing 130/775 atomic regions from SNP 38829 to 39430 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:14,927 DEBUG Processing 944/946 atomic regions from SNP 283111 to 283711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,963 DEBUG Processing 18/684 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:15,071 DEBUG Processing 856/1054 atomic regions from SNP 256587 to 257187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,136 DEBUG Processing 131/775 atomic regions from SNP 39130 to 39731 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:15,174 DEBUG Processing 19/684 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:15,179 DEBUG Processing 945/946 atomic regions from SNP 283411 to 284011 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,327 DEBUG Processing 857/1054 atomic regions from SNP 256887 to 257487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,360 DEBUG Processing 132/775 atomic regions from SNP 39431 to 40032 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:15,386 DEBUG Processing 20/684 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:15,434 DEBUG Processing 946/946 atomic regions from SNP 283711 to 284311 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,560 DEBUG Unique SNPs positions in subchromosome 1: 284312 2025-01-31 09:43:15,586 DEBUG Processing 133/775 atomic regions from SNP 39732 to 40333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:15,589 DEBUG Processing 858/1054 atomic regions from SNP 257187 to 257787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,592 DEBUG Processing 21/684 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:15,794 DEBUG Processing 22/684 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:15,810 DEBUG Processing 134/775 atomic regions from SNP 40033 to 40634 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:15,857 DEBUG Processing 859/1054 atomic regions from SNP 257487 to 258087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,993 DEBUG Processing 23/684 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:16,055 DEBUG Processing 135/775 atomic regions from SNP 40334 to 40935 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:16,125 DEBUG Processing 860/1054 atomic regions from SNP 257787 to 258387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,190 DEBUG Processing 24/684 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:16,268 DEBUG Processing 136/775 atomic regions from SNP 40635 to 41236 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:16,386 DEBUG Processing 861/1054 atomic regions from SNP 258087 to 258687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,389 DEBUG Processing 25/684 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:16,481 DEBUG Processing 137/775 atomic regions from SNP 40936 to 41537 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:16,592 DEBUG Processing 26/684 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:16,648 DEBUG Processing 862/1054 atomic regions from SNP 258387 to 258987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,700 DEBUG Processing 138/775 atomic regions from SNP 41237 to 41838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:16,796 DEBUG Processing 27/684 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:16,911 DEBUG Processing 863/1054 atomic regions from SNP 258687 to 259287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,918 DEBUG Processing 139/775 atomic regions from SNP 41538 to 42139 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:16,998 DEBUG Processing 28/684 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:17,141 DEBUG Processing 140/775 atomic regions from SNP 41839 to 42440 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:17,176 DEBUG Processing 864/1054 atomic regions from SNP 258987 to 259587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,200 DEBUG Processing 29/684 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:17,360 DEBUG Processing 141/775 atomic regions from SNP 42140 to 42741 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:17,404 DEBUG Processing 30/684 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:17,439 DEBUG Processing 865/1054 atomic regions from SNP 259287 to 259887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,571 DEBUG Processing 142/775 atomic regions from SNP 42441 to 43042 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:17,609 DEBUG Processing 31/684 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:17,703 DEBUG Processing 866/1054 atomic regions from SNP 259587 to 260187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,785 DEBUG Processing 143/775 atomic regions from SNP 42742 to 43343 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:17,807 DEBUG Processing 32/684 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:17,967 DEBUG Processing 867/1054 atomic regions from SNP 259887 to 260487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,003 DEBUG Processing 144/775 atomic regions from SNP 43043 to 43644 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:18,005 DEBUG Processing 33/684 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:18,215 DEBUG Processing 34/684 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:18,234 DEBUG Processing 145/775 atomic regions from SNP 43344 to 43945 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:18,243 DEBUG Processing 868/1054 atomic regions from SNP 260187 to 260787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,430 DEBUG Processing 35/684 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:18,466 DEBUG Processing 146/775 atomic regions from SNP 43645 to 44246 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:18,521 DEBUG Processing 869/1054 atomic regions from SNP 260487 to 261087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,637 DEBUG Processing 36/684 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:18,694 DEBUG Processing 147/775 atomic regions from SNP 43946 to 44547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:18,787 DEBUG Processing 870/1054 atomic regions from SNP 260787 to 261387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,834 DEBUG Processing 37/684 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:18,918 DEBUG Processing 148/775 atomic regions from SNP 44247 to 44848 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:19,032 DEBUG Processing 38/684 atomic regions from SNP 11137 to 11737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:19,047 DEBUG Processing 871/1054 atomic regions from SNP 261087 to 261687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,137 DEBUG Processing 149/775 atomic regions from SNP 44548 to 45149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:19,240 DEBUG Processing 39/684 atomic regions from SNP 11437 to 12037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:19,309 DEBUG Processing 872/1054 atomic regions from SNP 261387 to 261987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,356 DEBUG Processing 150/775 atomic regions from SNP 44849 to 45449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:19,444 DEBUG Processing 40/684 atomic regions from SNP 11737 to 12337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:19,575 DEBUG Processing 873/1054 atomic regions from SNP 261687 to 262287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,580 DEBUG Processing 151/775 atomic regions from SNP 45149 to 45749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:19,642 DEBUG Processing 41/684 atomic regions from SNP 12037 to 12637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:19,810 DEBUG Processing 152/775 atomic regions from SNP 45449 to 46049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:19,842 DEBUG Processing 42/684 atomic regions from SNP 12337 to 12937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:19,846 DEBUG Processing 874/1054 atomic regions from SNP 261987 to 262587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,030 DEBUG Processing 153/775 atomic regions from SNP 45749 to 46349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:20,050 DEBUG Processing 43/684 atomic regions from SNP 12637 to 13237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:20,116 DEBUG Processing 875/1054 atomic regions from SNP 262287 to 262887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,246 DEBUG Processing 154/775 atomic regions from SNP 46049 to 46649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:20,248 DEBUG Processing 44/684 atomic regions from SNP 12937 to 13537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:20,391 DEBUG Processing 876/1054 atomic regions from SNP 262587 to 263187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,442 DEBUG Processing 45/684 atomic regions from SNP 13237 to 13837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:20,451 DEBUG Subchromosome time: 272.676800346002, subchromosome SNPs: 284312 2025-01-31 09:43:20,454 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:20,461 DEBUG Processing 155/775 atomic regions from SNP 46349 to 46949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:20,645 DEBUG Processing 46/684 atomic regions from SNP 13537 to 14137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:20,670 DEBUG Processing 877/1054 atomic regions from SNP 262887 to 263487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,683 DEBUG Processing 156/775 atomic regions from SNP 46649 to 47249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:20,854 DEBUG Processing 47/684 atomic regions from SNP 13837 to 14437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:20,910 DEBUG Processing 157/775 atomic regions from SNP 46949 to 47549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:20,955 DEBUG Processing 878/1054 atomic regions from SNP 263187 to 263787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,054 DEBUG Processing 48/684 atomic regions from SNP 14137 to 14737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:21,137 DEBUG Processing 158/775 atomic regions from SNP 47249 to 47849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:21,228 DEBUG Processing 879/1054 atomic regions from SNP 263487 to 264087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,256 DEBUG Processing 49/684 atomic regions from SNP 14437 to 15037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:21,358 DEBUG Processing 159/775 atomic regions from SNP 47549 to 48149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:21,375 DEBUG Segmenting atomic regions: 2025-01-31 09:43:21,460 DEBUG Processing 50/684 atomic regions from SNP 14737 to 15337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:21,500 DEBUG Processing 1/24 atomic regions from SNP 0 to 610 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:21,516 DEBUG Processing 880/1054 atomic regions from SNP 263787 to 264387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,573 DEBUG Processing 160/775 atomic regions from SNP 47849 to 48449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:21,667 DEBUG Processing 51/684 atomic regions from SNP 15037 to 15637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:21,746 DEBUG Processing 2/24 atomic regions from SNP 310 to 920 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:21,788 DEBUG Processing 161/775 atomic regions from SNP 48149 to 48749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:21,795 DEBUG Processing 881/1054 atomic regions from SNP 264087 to 264687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,867 DEBUG Processing 52/684 atomic regions from SNP 15337 to 15937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:21,984 DEBUG Processing 3/24 atomic regions from SNP 620 to 1230 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:22,004 DEBUG Processing 162/775 atomic regions from SNP 48449 to 49049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:22,066 DEBUG Processing 53/684 atomic regions from SNP 15637 to 16237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:22,077 DEBUG Processing 882/1054 atomic regions from SNP 264387 to 264987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,222 DEBUG Processing 163/775 atomic regions from SNP 48749 to 49349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:22,224 DEBUG Processing 4/24 atomic regions from SNP 930 to 1540 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:22,262 DEBUG Processing 54/684 atomic regions from SNP 15937 to 16537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:22,346 DEBUG Processing 883/1054 atomic regions from SNP 264687 to 265287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,440 DEBUG Processing 164/775 atomic regions from SNP 49049 to 49649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:22,461 DEBUG Processing 55/684 atomic regions from SNP 16237 to 16837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:22,464 DEBUG Processing 5/24 atomic regions from SNP 1240 to 1850 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:22,612 DEBUG Processing 884/1054 atomic regions from SNP 264987 to 265587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,658 DEBUG Processing 165/775 atomic regions from SNP 49349 to 49949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:22,668 DEBUG Processing 56/684 atomic regions from SNP 16537 to 17137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:22,706 DEBUG Processing 6/24 atomic regions from SNP 1550 to 2160 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:22,875 DEBUG Processing 57/684 atomic regions from SNP 16837 to 17437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:22,878 DEBUG Processing 166/775 atomic regions from SNP 49649 to 50249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:22,879 DEBUG Processing 885/1054 atomic regions from SNP 265287 to 265887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,947 DEBUG Processing 7/24 atomic regions from SNP 1860 to 2470 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:23,080 DEBUG Processing 58/684 atomic regions from SNP 17137 to 17737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:23,097 DEBUG Processing 167/775 atomic regions from SNP 49949 to 50549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:23,141 DEBUG Processing 886/1054 atomic regions from SNP 265587 to 266187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,189 DEBUG Processing 8/24 atomic regions from SNP 2170 to 2780 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:23,277 DEBUG Processing 59/684 atomic regions from SNP 17437 to 18037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:23,318 DEBUG Processing 168/775 atomic regions from SNP 50249 to 50849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:23,401 DEBUG Processing 887/1054 atomic regions from SNP 265887 to 266487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,428 DEBUG Processing 9/24 atomic regions from SNP 2480 to 3090 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:23,479 DEBUG Processing 60/684 atomic regions from SNP 17737 to 18337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:23,530 DEBUG Segmenting atomic regions: 2025-01-31 09:43:23,538 DEBUG Processing 169/775 atomic regions from SNP 50549 to 51149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:23,623 DEBUG Processing 1/654 atomic regions from SNP 0 to 601 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:23,660 DEBUG Processing 10/24 atomic regions from SNP 2790 to 3400 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:23,665 DEBUG Processing 888/1054 atomic regions from SNP 266187 to 266787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,682 DEBUG Processing 61/684 atomic regions from SNP 18037 to 18637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:23,764 DEBUG Processing 170/775 atomic regions from SNP 50849 to 51449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:23,823 DEBUG Processing 2/654 atomic regions from SNP 301 to 902 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:23,878 DEBUG Processing 62/684 atomic regions from SNP 18337 to 18937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:23,893 DEBUG Processing 11/24 atomic regions from SNP 3100 to 3709 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:23,950 DEBUG Processing 889/1054 atomic regions from SNP 266487 to 267087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,992 DEBUG Processing 171/775 atomic regions from SNP 51149 to 51749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:24,034 DEBUG Processing 3/654 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:24,076 DEBUG Processing 63/684 atomic regions from SNP 18637 to 19237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:24,127 DEBUG Processing 12/24 atomic regions from SNP 3409 to 4018 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:24,216 DEBUG Processing 890/1054 atomic regions from SNP 266787 to 267387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,220 DEBUG Processing 172/775 atomic regions from SNP 51449 to 52049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:24,252 DEBUG Processing 4/654 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:24,288 DEBUG Processing 64/684 atomic regions from SNP 18937 to 19537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:24,367 DEBUG Processing 13/24 atomic regions from SNP 3718 to 4327 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:24,441 DEBUG Processing 173/775 atomic regions from SNP 51749 to 52349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:24,461 DEBUG Processing 5/654 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:24,482 DEBUG Processing 891/1054 atomic regions from SNP 267087 to 267687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,498 DEBUG Processing 65/684 atomic regions from SNP 19237 to 19837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:24,634 DEBUG Processing 14/24 atomic regions from SNP 4027 to 4636 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:24,658 DEBUG Processing 174/775 atomic regions from SNP 52049 to 52649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:24,689 DEBUG Processing 6/654 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:24,707 DEBUG Processing 66/684 atomic regions from SNP 19537 to 20137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:24,755 DEBUG Processing 892/1054 atomic regions from SNP 267387 to 267987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,874 DEBUG Processing 175/775 atomic regions from SNP 52349 to 52949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:24,910 DEBUG Processing 15/24 atomic regions from SNP 4336 to 4945 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:24,912 DEBUG Processing 67/684 atomic regions from SNP 19837 to 20437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:24,918 DEBUG Processing 7/654 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:25,027 DEBUG Processing 893/1054 atomic regions from SNP 267687 to 268287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,092 DEBUG Processing 176/775 atomic regions from SNP 52649 to 53249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:25,121 DEBUG Processing 68/684 atomic regions from SNP 20137 to 20737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:25,143 DEBUG Processing 8/654 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:25,178 DEBUG Processing 16/24 atomic regions from SNP 4645 to 5254 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:25,300 DEBUG Processing 894/1054 atomic regions from SNP 267987 to 268587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,312 DEBUG Processing 177/775 atomic regions from SNP 52949 to 53549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:25,320 DEBUG Processing 69/684 atomic regions from SNP 20437 to 21037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:25,377 DEBUG Processing 9/654 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:25,433 DEBUG Processing 17/24 atomic regions from SNP 4954 to 5563 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:25,516 DEBUG Processing 70/684 atomic regions from SNP 20737 to 21337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:25,534 DEBUG Processing 178/775 atomic regions from SNP 53249 to 53849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:25,569 DEBUG Processing 895/1054 atomic regions from SNP 268287 to 268887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,581 DEBUG Processing 10/654 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:25,686 DEBUG Processing 18/24 atomic regions from SNP 5263 to 5872 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:25,723 DEBUG Processing 71/684 atomic regions from SNP 21037 to 21637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:25,762 DEBUG Processing 179/775 atomic regions from SNP 53549 to 54149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:25,815 DEBUG Processing 11/654 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:25,832 DEBUG Processing 896/1054 atomic regions from SNP 268587 to 269187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,930 DEBUG Processing 19/24 atomic regions from SNP 5572 to 6181 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:25,930 DEBUG Processing 72/684 atomic regions from SNP 21337 to 21937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:25,990 DEBUG Processing 180/775 atomic regions from SNP 53849 to 54449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:26,032 DEBUG Processing 12/654 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:26,091 DEBUG Processing 897/1054 atomic regions from SNP 268887 to 269487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,131 DEBUG Processing 73/684 atomic regions from SNP 21637 to 22237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:26,175 DEBUG Processing 20/24 atomic regions from SNP 5881 to 6490 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:26,219 DEBUG Processing 181/775 atomic regions from SNP 54149 to 54749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:26,240 DEBUG Processing 13/654 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:26,329 DEBUG Processing 74/684 atomic regions from SNP 21937 to 22537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:26,353 DEBUG Processing 898/1054 atomic regions from SNP 269187 to 269787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,422 DEBUG Processing 21/24 atomic regions from SNP 6190 to 6799 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:26,444 DEBUG Processing 182/775 atomic regions from SNP 54449 to 55049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:26,460 DEBUG Processing 14/654 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:26,530 DEBUG Processing 75/684 atomic regions from SNP 22237 to 22837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:26,613 DEBUG Processing 899/1054 atomic regions from SNP 269487 to 270087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,666 DEBUG Processing 15/654 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:26,670 DEBUG Processing 183/775 atomic regions from SNP 54749 to 55349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:26,671 DEBUG Processing 22/24 atomic regions from SNP 6499 to 7108 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:26,739 DEBUG Processing 76/684 atomic regions from SNP 22537 to 23137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:26,868 DEBUG Processing 16/654 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:26,878 DEBUG Processing 900/1054 atomic regions from SNP 269787 to 270387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,895 DEBUG Processing 184/775 atomic regions from SNP 55049 to 55649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:26,934 DEBUG Processing 23/24 atomic regions from SNP 6808 to 7417 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:26,946 DEBUG Processing 77/684 atomic regions from SNP 22837 to 23437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:27,068 DEBUG Processing 17/654 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:27,122 DEBUG Processing 185/775 atomic regions from SNP 55349 to 55949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:27,144 DEBUG Processing 901/1054 atomic regions from SNP 270087 to 270687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,150 DEBUG Processing 78/684 atomic regions from SNP 23137 to 23737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:27,192 DEBUG Processing 24/24 atomic regions from SNP 7117 to 7726 for chr2 (subchromosome 2 of 2). 2025-01-31 09:43:27,271 DEBUG Processing 18/654 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:27,311 DEBUG Unique SNPs positions in subchromosome 2: 7727 2025-01-31 09:43:27,321 DEBUG Subchromosome time: 6.8675169760826975, subchromosome SNPs: 7727 2025-01-31 09:43:27,322 DEBUG Estimated BADs: [0.53, 1.05, 3.16, 1.05, 0.18, 0.53, 1.05, 0.11, 0.53, 3.16, 1.05, 2.10, 1.05, 2.10, 1.05, 3.16, 1.05, 1.05, 4.21] SNP counts: [24335, 11182, 21468, 5508, 4997, 30286, 54303, 3592, 29699, 5177, 9751, 7301, 35186, 9534, 10193, 8997, 12803, 3617, 4110] SNP IDs counts: [24335, 11182, 21468, 5508, 4997, 30286, 54303, 3592, 29699, 5177, 9751, 7301, 35186, 9534, 10193, 8997, 12803, 3617, 4110] Critical gap: 754439bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 18.02Mbp, 24.92Mbp, 36.29Mbp, 39.70Mbp, 43.71Mbp, 62.97Mbp, 96.91Mbp, 100.26Mbp, 118.66Mbp, 121.41Mbp, 127.20Mbp, 131.13Mbp, 152.33Mbp, 157.44Mbp, 163.21Mbp, 168.02Mbp, 175.18Mbp[1.52Mbp], 179.82Mbp, 182.11Mbp] 2025-01-31 09:43:27,322 DEBUG chr2 time: 6.867996203014627 s 2025-01-31 09:43:27,352 DEBUG Processing 186/775 atomic regions from SNP 55649 to 56249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:27,353 DEBUG Processing 79/684 atomic regions from SNP 23437 to 24037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:27,415 DEBUG Processing 902/1054 atomic regions from SNP 270387 to 270987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,476 DEBUG Processing 19/654 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:27,484 DEBUG chr2: Fitting background model for 19 segments 2025-01-31 09:43:27,500 DEBUG Segmenting atomic regions: 2025-01-31 09:43:27,552 DEBUG Processing 80/684 atomic regions from SNP 23737 to 24337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:27,579 DEBUG Processing 187/775 atomic regions from SNP 55949 to 56549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:27,588 DEBUG Processing 1/664 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:27,681 DEBUG Processing 20/654 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:27,684 DEBUG Processing 903/1054 atomic regions from SNP 270687 to 271287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,756 DEBUG Processing 81/684 atomic regions from SNP 24037 to 24637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:27,792 DEBUG Processing 2/664 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:27,800 DEBUG Processing 188/775 atomic regions from SNP 56249 to 56849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:27,908 DEBUG Processing 21/654 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:27,957 DEBUG Processing 904/1054 atomic regions from SNP 270987 to 271587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,959 DEBUG Processing 82/684 atomic regions from SNP 24337 to 24937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:28,001 DEBUG Processing 3/664 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:28,035 DEBUG Processing 189/775 atomic regions from SNP 56549 to 57149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:28,142 DEBUG Processing 22/654 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:28,162 DEBUG Processing 83/684 atomic regions from SNP 24637 to 25237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:28,222 DEBUG Processing 4/664 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:28,231 DEBUG Processing 905/1054 atomic regions from SNP 271287 to 271887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,261 DEBUG Processing 190/775 atomic regions from SNP 56849 to 57449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:28,375 DEBUG Processing 84/684 atomic regions from SNP 24937 to 25537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:28,385 DEBUG Processing 23/654 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:28,436 DEBUG Processing 5/664 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:28,489 DEBUG Processing 191/775 atomic regions from SNP 57149 to 57749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:28,505 DEBUG Processing 906/1054 atomic regions from SNP 271587 to 272187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,588 DEBUG Processing 85/684 atomic regions from SNP 25237 to 25837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:28,601 DEBUG Processing 24/654 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:28,647 DEBUG Processing 6/664 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:28,715 DEBUG Processing 192/775 atomic regions from SNP 57449 to 58049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:28,778 DEBUG Processing 907/1054 atomic regions from SNP 271887 to 272487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,796 DEBUG Processing 86/684 atomic regions from SNP 25537 to 26137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:28,814 DEBUG Processing 25/654 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:28,880 DEBUG Processing 7/664 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:28,938 DEBUG Processing 193/775 atomic regions from SNP 57749 to 58349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:29,000 DEBUG Processing 87/684 atomic regions from SNP 25837 to 26437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:29,024 DEBUG Processing 26/654 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:29,047 DEBUG Processing 908/1054 atomic regions from SNP 272187 to 272787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,091 DEBUG Processing 8/664 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:29,162 DEBUG Processing 194/775 atomic regions from SNP 58049 to 58649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:29,211 DEBUG Processing 88/684 atomic regions from SNP 26137 to 26737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:29,249 DEBUG Processing 27/654 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:29,299 DEBUG Processing 9/664 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:29,317 DEBUG Processing 909/1054 atomic regions from SNP 272487 to 273087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,383 DEBUG Processing 195/775 atomic regions from SNP 58349 to 58949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:29,428 DEBUG Processing 89/684 atomic regions from SNP 26437 to 27037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:29,494 DEBUG Processing 28/654 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:29,515 DEBUG Processing 10/664 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:29,589 DEBUG Processing 910/1054 atomic regions from SNP 272787 to 273387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,605 DEBUG Processing 196/775 atomic regions from SNP 58649 to 59249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:29,635 DEBUG Processing 90/684 atomic regions from SNP 26737 to 27337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:29,715 DEBUG Processing 29/654 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:29,731 DEBUG Processing 11/664 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:29,825 DEBUG Processing 197/775 atomic regions from SNP 58949 to 59549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:29,839 DEBUG Processing 91/684 atomic regions from SNP 27037 to 27637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:29,874 DEBUG Processing 911/1054 atomic regions from SNP 273087 to 273687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,947 DEBUG Processing 30/654 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:29,948 DEBUG Processing 12/664 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:30,053 DEBUG Processing 198/775 atomic regions from SNP 59249 to 59849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:30,054 DEBUG Processing 92/684 atomic regions from SNP 27337 to 27937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:30,154 DEBUG Processing 13/664 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:30,172 DEBUG Processing 912/1054 atomic regions from SNP 273387 to 273987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,177 DEBUG Processing 31/654 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:30,278 DEBUG Processing 199/775 atomic regions from SNP 59549 to 60149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:30,297 DEBUG Processing 93/684 atomic regions from SNP 27637 to 28237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:30,369 DEBUG Processing 14/664 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:30,388 DEBUG Processing 32/654 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:30,472 DEBUG Processing 913/1054 atomic regions from SNP 273687 to 274287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,502 DEBUG Processing 200/775 atomic regions from SNP 59849 to 60449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:30,512 DEBUG Processing 94/684 atomic regions from SNP 27937 to 28537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:30,585 DEBUG Processing 15/664 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:30,616 DEBUG Processing 33/654 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:30,712 DEBUG Processing 95/684 atomic regions from SNP 28237 to 28837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:30,726 DEBUG Processing 201/775 atomic regions from SNP 60149 to 60749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:30,755 DEBUG Processing 914/1054 atomic regions from SNP 273987 to 274587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,799 DEBUG Processing 16/664 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:30,848 DEBUG Processing 34/654 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:30,917 DEBUG Processing 96/684 atomic regions from SNP 28537 to 29137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:30,951 DEBUG Processing 202/775 atomic regions from SNP 60449 to 61049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:31,008 DEBUG Processing 17/664 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:31,021 DEBUG Processing 915/1054 atomic regions from SNP 274287 to 274887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,062 DEBUG Processing 35/654 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:31,131 DEBUG Processing 97/684 atomic regions from SNP 28837 to 29437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:31,181 DEBUG Processing 203/775 atomic regions from SNP 60749 to 61349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:31,222 DEBUG Processing 18/664 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:31,272 DEBUG Processing 36/654 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:31,293 DEBUG Processing 916/1054 atomic regions from SNP 274587 to 275187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,343 DEBUG Processing 98/684 atomic regions from SNP 29137 to 29737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:31,413 DEBUG Processing 204/775 atomic regions from SNP 61049 to 61649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:31,440 DEBUG Processing 19/664 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:31,485 DEBUG Processing 37/654 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:31,541 DEBUG Processing 99/684 atomic regions from SNP 29437 to 30037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:31,559 DEBUG Processing 917/1054 atomic regions from SNP 274887 to 275487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,637 DEBUG Processing 205/775 atomic regions from SNP 61349 to 61949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:31,653 DEBUG Processing 20/664 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:31,703 DEBUG Processing 38/654 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:31,749 DEBUG Processing 100/684 atomic regions from SNP 29737 to 30337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:31,820 DEBUG Processing 918/1054 atomic regions from SNP 275187 to 275787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,862 DEBUG Processing 206/775 atomic regions from SNP 61649 to 62249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:31,864 DEBUG Processing 21/664 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:31,930 DEBUG Processing 39/654 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:31,962 DEBUG Processing 101/684 atomic regions from SNP 30037 to 30637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:32,076 DEBUG Processing 22/664 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:32,092 DEBUG Processing 207/775 atomic regions from SNP 61949 to 62549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:32,105 DEBUG Processing 919/1054 atomic regions from SNP 275487 to 276087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,149 DEBUG Processing 40/654 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:32,177 DEBUG Processing 102/684 atomic regions from SNP 30337 to 30937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:32,296 DEBUG Processing 23/664 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:32,326 DEBUG Processing 208/775 atomic regions from SNP 62249 to 62849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:32,384 DEBUG Processing 920/1054 atomic regions from SNP 275787 to 276387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,388 DEBUG Processing 41/654 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:32,391 DEBUG Processing 103/684 atomic regions from SNP 30637 to 31237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:32,510 DEBUG Processing 24/664 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:32,557 DEBUG Processing 209/775 atomic regions from SNP 62549 to 63149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:32,602 DEBUG Processing 104/684 atomic regions from SNP 30937 to 31537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:32,612 DEBUG Processing 42/654 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:32,661 DEBUG Processing 921/1054 atomic regions from SNP 276087 to 276687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,720 DEBUG Processing 25/664 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:32,781 DEBUG Processing 210/775 atomic regions from SNP 62849 to 63449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:32,813 DEBUG Processing 105/684 atomic regions from SNP 31237 to 31837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:32,828 DEBUG Processing 43/654 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:32,936 DEBUG Processing 26/664 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:32,938 DEBUG Processing 922/1054 atomic regions from SNP 276387 to 276987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,003 DEBUG Processing 211/775 atomic regions from SNP 63149 to 63749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:33,023 DEBUG Processing 106/684 atomic regions from SNP 31537 to 32137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:33,038 DEBUG Processing 44/654 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:33,156 DEBUG Processing 27/664 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:33,220 DEBUG Processing 923/1054 atomic regions from SNP 276687 to 277287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,235 DEBUG Processing 212/775 atomic regions from SNP 63449 to 64049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:33,236 DEBUG Processing 107/684 atomic regions from SNP 31837 to 32437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:33,255 DEBUG Processing 45/654 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:33,367 DEBUG Processing 28/664 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:33,449 DEBUG Processing 108/684 atomic regions from SNP 32137 to 32737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:33,473 DEBUG Processing 213/775 atomic regions from SNP 63749 to 64349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:33,475 DEBUG Processing 46/654 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:33,502 DEBUG Processing 924/1054 atomic regions from SNP 276987 to 277587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,578 DEBUG Processing 29/664 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:33,654 DEBUG Processing 109/684 atomic regions from SNP 32437 to 33037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:33,687 DEBUG Processing 47/654 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:33,712 DEBUG Processing 214/775 atomic regions from SNP 64049 to 64649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:33,789 DEBUG Processing 925/1054 atomic regions from SNP 277287 to 277887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,808 DEBUG Processing 30/664 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:33,872 DEBUG Processing 110/684 atomic regions from SNP 32737 to 33337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:33,909 DEBUG Processing 48/654 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:33,955 DEBUG Processing 215/775 atomic regions from SNP 64349 to 64949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:34,033 DEBUG Processing 31/664 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:34,074 DEBUG Processing 926/1054 atomic regions from SNP 277587 to 278187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,105 DEBUG Processing 111/684 atomic regions from SNP 33037 to 33637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:34,145 DEBUG Processing 49/654 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:34,204 DEBUG Processing 216/775 atomic regions from SNP 64649 to 65249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:34,263 DEBUG Processing 32/664 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:34,337 DEBUG Processing 112/684 atomic regions from SNP 33337 to 33937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:34,363 DEBUG Processing 927/1054 atomic regions from SNP 277887 to 278487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,378 DEBUG Processing 50/654 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:34,457 DEBUG Processing 217/775 atomic regions from SNP 64949 to 65549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:34,501 DEBUG Processing 33/664 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:34,567 DEBUG Processing 113/684 atomic regions from SNP 33637 to 34237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:34,612 DEBUG Processing 51/654 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:34,652 DEBUG Processing 928/1054 atomic regions from SNP 278187 to 278787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,710 DEBUG Processing 218/775 atomic regions from SNP 65249 to 65849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:34,744 DEBUG Processing 34/664 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:34,800 DEBUG Processing 114/684 atomic regions from SNP 33937 to 34537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:34,849 DEBUG Processing 52/654 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:34,947 DEBUG Processing 929/1054 atomic regions from SNP 278487 to 279087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,963 DEBUG Processing 219/775 atomic regions from SNP 65549 to 66149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:34,986 DEBUG Processing 35/664 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:35,070 DEBUG Processing 115/684 atomic regions from SNP 34237 to 34837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:35,206 DEBUG Processing 53/654 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:35,269 DEBUG Processing 36/664 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:35,280 DEBUG Processing 220/775 atomic regions from SNP 65849 to 66449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:35,309 DEBUG Processing 930/1054 atomic regions from SNP 278787 to 279387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,315 DEBUG Processing 116/684 atomic regions from SNP 34537 to 35137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:35,420 DEBUG Processing 54/654 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:35,504 DEBUG Processing 37/664 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:35,531 DEBUG Processing 221/775 atomic regions from SNP 66149 to 66749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:35,538 DEBUG Processing 117/684 atomic regions from SNP 34837 to 35437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:35,606 DEBUG Processing 931/1054 atomic regions from SNP 279087 to 279687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,638 DEBUG Processing 55/654 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:35,727 DEBUG Processing 38/664 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:35,751 DEBUG Processing 118/684 atomic regions from SNP 35137 to 35737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:35,771 DEBUG Processing 222/775 atomic regions from SNP 66449 to 67049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:35,860 DEBUG Processing 56/654 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:35,896 DEBUG Processing 932/1054 atomic regions from SNP 279387 to 279987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,950 DEBUG Processing 39/664 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:35,958 DEBUG Processing 119/684 atomic regions from SNP 35437 to 36037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:36,005 DEBUG Processing 223/775 atomic regions from SNP 66749 to 67349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:36,072 DEBUG Processing 57/654 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:36,172 DEBUG Processing 40/664 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:36,176 DEBUG Processing 933/1054 atomic regions from SNP 279687 to 280287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,177 DEBUG Processing 120/684 atomic regions from SNP 35737 to 36337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:36,246 DEBUG Processing 224/775 atomic regions from SNP 67049 to 67649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:36,281 DEBUG Processing 58/654 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:36,393 DEBUG Processing 41/664 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:36,396 DEBUG Processing 121/684 atomic regions from SNP 36037 to 36637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:36,458 DEBUG Processing 934/1054 atomic regions from SNP 279987 to 280587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,480 DEBUG Processing 225/775 atomic regions from SNP 67349 to 67949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:36,491 DEBUG Processing 59/654 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:36,611 DEBUG Processing 122/684 atomic regions from SNP 36337 to 36937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:36,633 DEBUG Processing 42/664 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:36,705 DEBUG Processing 60/654 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:36,711 DEBUG Processing 226/775 atomic regions from SNP 67649 to 68249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:36,733 DEBUG Processing 935/1054 atomic regions from SNP 280287 to 280887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,822 DEBUG Processing 123/684 atomic regions from SNP 36637 to 37237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:36,856 DEBUG Processing 43/664 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:36,926 DEBUG Processing 61/654 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:36,943 DEBUG Processing 227/775 atomic regions from SNP 67949 to 68549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:37,012 DEBUG Processing 936/1054 atomic regions from SNP 280587 to 281187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,047 DEBUG Processing 124/684 atomic regions from SNP 36937 to 37537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:37,076 DEBUG Processing 44/664 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:37,149 DEBUG Processing 62/654 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:37,171 DEBUG Processing 228/775 atomic regions from SNP 68249 to 68849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:37,262 DEBUG Processing 125/684 atomic regions from SNP 37237 to 37837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:37,295 DEBUG Processing 937/1054 atomic regions from SNP 280887 to 281487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,303 DEBUG Processing 45/664 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:37,372 DEBUG Processing 63/654 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:37,405 DEBUG Processing 229/775 atomic regions from SNP 68549 to 69149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:37,468 DEBUG Processing 126/684 atomic regions from SNP 37537 to 38137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:37,532 DEBUG Processing 46/664 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:37,585 DEBUG Processing 938/1054 atomic regions from SNP 281187 to 281787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,602 DEBUG Processing 64/654 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:37,641 DEBUG Processing 230/775 atomic regions from SNP 68849 to 69449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:37,678 DEBUG Processing 127/684 atomic regions from SNP 37837 to 38437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:37,748 DEBUG Processing 47/664 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:37,830 DEBUG Processing 65/654 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:37,870 DEBUG Processing 939/1054 atomic regions from SNP 281487 to 282087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,888 DEBUG Processing 231/775 atomic regions from SNP 69149 to 69749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:37,900 DEBUG Processing 128/684 atomic regions from SNP 38137 to 38737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:37,962 DEBUG Processing 48/664 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:38,054 DEBUG Processing 66/654 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:38,127 DEBUG Processing 129/684 atomic regions from SNP 38437 to 39037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:38,146 DEBUG Processing 232/775 atomic regions from SNP 69449 to 70049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:38,172 DEBUG Processing 940/1054 atomic regions from SNP 281787 to 282387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,193 DEBUG Processing 49/664 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:38,280 DEBUG Processing 67/654 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:38,357 DEBUG Processing 130/684 atomic regions from SNP 38737 to 39337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:38,403 DEBUG Processing 233/775 atomic regions from SNP 69749 to 70349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:38,430 DEBUG Processing 50/664 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:38,468 DEBUG Processing 941/1054 atomic regions from SNP 282087 to 282687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,500 DEBUG Processing 68/654 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:38,573 DEBUG Processing 131/684 atomic regions from SNP 39037 to 39637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:38,662 DEBUG Processing 51/664 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:38,663 DEBUG Processing 234/775 atomic regions from SNP 70049 to 70649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:38,725 DEBUG Processing 69/654 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:38,762 DEBUG Processing 942/1054 atomic regions from SNP 282387 to 282987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,802 DEBUG Processing 132/684 atomic regions from SNP 39337 to 39937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:38,932 DEBUG Processing 52/664 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:38,954 DEBUG Processing 235/775 atomic regions from SNP 70349 to 70949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:39,071 DEBUG Processing 70/654 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:39,157 DEBUG Processing 133/684 atomic regions from SNP 39637 to 40237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:39,173 DEBUG Processing 943/1054 atomic regions from SNP 282687 to 283287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,239 DEBUG Processing 53/664 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:39,254 DEBUG Processing 236/775 atomic regions from SNP 70649 to 71249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:39,336 DEBUG Processing 71/654 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:39,437 DEBUG Processing 134/684 atomic regions from SNP 39937 to 40537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:39,533 DEBUG Processing 944/1054 atomic regions from SNP 282987 to 283587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,570 DEBUG Processing 54/664 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:39,621 DEBUG Processing 237/775 atomic regions from SNP 70949 to 71549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:39,654 DEBUG Processing 72/654 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:39,756 DEBUG Processing 135/684 atomic regions from SNP 40237 to 40837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:39,835 DEBUG Processing 55/664 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:39,884 DEBUG Processing 945/1054 atomic regions from SNP 283287 to 283887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,887 DEBUG Processing 73/654 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:39,887 DEBUG Processing 238/775 atomic regions from SNP 71249 to 71849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:39,971 DEBUG Processing 136/684 atomic regions from SNP 40537 to 41137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:40,070 DEBUG Processing 56/664 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:40,111 DEBUG Processing 74/654 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:40,138 DEBUG Processing 239/775 atomic regions from SNP 71549 to 72149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:40,186 DEBUG Processing 946/1054 atomic regions from SNP 283587 to 284187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,211 DEBUG Processing 137/684 atomic regions from SNP 40837 to 41437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:40,314 DEBUG Processing 57/664 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:40,340 DEBUG Processing 75/654 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:40,391 DEBUG Processing 240/775 atomic regions from SNP 71849 to 72449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:40,425 DEBUG Processing 138/684 atomic regions from SNP 41137 to 41737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:40,480 DEBUG Processing 947/1054 atomic regions from SNP 283887 to 284487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,577 DEBUG Processing 58/664 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:40,644 DEBUG Processing 76/654 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:40,733 DEBUG Processing 139/684 atomic regions from SNP 41437 to 42037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:40,749 DEBUG Processing 241/775 atomic regions from SNP 72149 to 72749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:40,823 DEBUG Processing 948/1054 atomic regions from SNP 284187 to 284787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,889 DEBUG Processing 59/664 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:40,972 DEBUG Processing 77/654 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:41,022 DEBUG Processing 140/684 atomic regions from SNP 41737 to 42337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:41,078 DEBUG Processing 242/775 atomic regions from SNP 72449 to 73049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:41,124 DEBUG Processing 60/664 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:41,150 DEBUG Processing 949/1054 atomic regions from SNP 284487 to 285087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,195 DEBUG Processing 78/654 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:41,338 DEBUG Processing 141/684 atomic regions from SNP 42037 to 42637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:41,438 DEBUG Processing 243/775 atomic regions from SNP 72749 to 73349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:41,475 DEBUG Processing 61/664 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:41,530 DEBUG Processing 79/654 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:41,532 DEBUG Processing 950/1054 atomic regions from SNP 284787 to 285387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,588 DEBUG Processing 142/684 atomic regions from SNP 42337 to 42937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:41,693 DEBUG Processing 244/775 atomic regions from SNP 73049 to 73649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:41,744 DEBUG Processing 62/664 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:41,768 DEBUG Processing 80/654 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:41,811 DEBUG Processing 143/684 atomic regions from SNP 42637 to 43237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:41,828 DEBUG Processing 951/1054 atomic regions from SNP 285087 to 285687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,940 DEBUG Processing 245/775 atomic regions from SNP 73349 to 73949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:42,027 DEBUG Processing 63/664 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:42,035 DEBUG Processing 81/654 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:42,100 DEBUG Processing 144/684 atomic regions from SNP 42937 to 43537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:42,193 DEBUG Processing 952/1054 atomic regions from SNP 285387 to 285987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,244 DEBUG Processing 246/775 atomic regions from SNP 73649 to 74249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:42,325 DEBUG Processing 64/664 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:42,332 DEBUG Processing 82/654 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:42,412 DEBUG Processing 145/684 atomic regions from SNP 43237 to 43837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:42,629 DEBUG Processing 247/775 atomic regions from SNP 73949 to 74549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:42,643 DEBUG Processing 953/1054 atomic regions from SNP 285687 to 286287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,685 DEBUG Processing 65/664 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:42,697 DEBUG Processing 83/654 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:42,759 DEBUG Processing 146/684 atomic regions from SNP 43537 to 44137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:43,098 DEBUG Processing 248/775 atomic regions from SNP 74249 to 74849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:43,123 DEBUG Processing 84/654 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:43,134 DEBUG Processing 954/1054 atomic regions from SNP 285987 to 286587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,155 DEBUG Processing 66/664 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:43,186 DEBUG Processing 147/684 atomic regions from SNP 43837 to 44437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:43,502 DEBUG Processing 85/654 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:43,506 DEBUG Processing 249/775 atomic regions from SNP 74549 to 75149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:43,528 DEBUG Processing 67/664 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:43,553 DEBUG Processing 148/684 atomic regions from SNP 44137 to 44737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:43,573 DEBUG Processing 955/1054 atomic regions from SNP 286287 to 286887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,919 DEBUG Processing 68/664 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:43,924 DEBUG Processing 250/775 atomic regions from SNP 74849 to 75449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:43,926 DEBUG Processing 86/654 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:43,960 DEBUG Processing 149/684 atomic regions from SNP 44437 to 45037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:44,022 DEBUG Processing 956/1054 atomic regions from SNP 286587 to 287187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,300 DEBUG Processing 69/664 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:44,323 DEBUG Processing 251/775 atomic regions from SNP 75149 to 75749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:44,340 DEBUG Processing 87/654 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:44,370 DEBUG Processing 150/684 atomic regions from SNP 44737 to 45337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:44,487 DEBUG Processing 957/1054 atomic regions from SNP 286887 to 287487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,710 DEBUG Processing 70/664 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:44,748 DEBUG Processing 252/775 atomic regions from SNP 75449 to 76049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:44,777 DEBUG Processing 88/654 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:44,811 DEBUG Processing 151/684 atomic regions from SNP 45037 to 45637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:45,039 DEBUG Processing 958/1054 atomic regions from SNP 287187 to 287787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,169 DEBUG Processing 71/664 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:45,193 DEBUG Processing 253/775 atomic regions from SNP 75749 to 76349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:45,218 DEBUG Processing 89/654 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:45,266 DEBUG Processing 152/684 atomic regions from SNP 45337 to 45937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:45,560 DEBUG Processing 959/1054 atomic regions from SNP 287487 to 288087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,619 DEBUG Processing 72/664 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:45,639 DEBUG Processing 90/654 atomic regions from SNP 26789 to 27390 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:45,646 DEBUG Processing 254/775 atomic regions from SNP 76049 to 76649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:45,679 DEBUG Processing 153/684 atomic regions from SNP 45637 to 46237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:46,103 DEBUG Processing 73/664 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:46,116 DEBUG Processing 960/1054 atomic regions from SNP 287787 to 288387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,134 DEBUG Processing 91/654 atomic regions from SNP 27090 to 27691 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:46,141 DEBUG Processing 255/775 atomic regions from SNP 76349 to 76949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:46,147 DEBUG Processing 154/684 atomic regions from SNP 45937 to 46537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:46,512 DEBUG Processing 74/664 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:46,573 DEBUG Processing 92/654 atomic regions from SNP 27391 to 27992 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:46,609 DEBUG Processing 155/684 atomic regions from SNP 46237 to 46837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:46,613 DEBUG Processing 256/775 atomic regions from SNP 76649 to 77249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:46,642 DEBUG Processing 961/1054 atomic regions from SNP 288087 to 288687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,956 DEBUG Processing 75/664 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:47,016 DEBUG Processing 93/654 atomic regions from SNP 27692 to 28293 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:47,018 DEBUG Processing 156/684 atomic regions from SNP 46537 to 47137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:47,058 DEBUG Processing 257/775 atomic regions from SNP 76949 to 77549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:47,159 DEBUG Processing 962/1054 atomic regions from SNP 288387 to 288987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,286 DEBUG Processing 76/664 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:47,391 DEBUG Processing 157/684 atomic regions from SNP 46837 to 47437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:47,393 DEBUG Processing 94/654 atomic regions from SNP 27993 to 28594 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:47,482 DEBUG Processing 258/775 atomic regions from SNP 77249 to 77849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:47,636 DEBUG Processing 77/664 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:47,670 DEBUG Processing 963/1054 atomic regions from SNP 288687 to 289287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,717 DEBUG Processing 158/684 atomic regions from SNP 47137 to 47737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:47,726 DEBUG Processing 95/654 atomic regions from SNP 28294 to 28895 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:47,842 DEBUG Processing 259/775 atomic regions from SNP 77549 to 78149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:48,101 DEBUG Processing 78/664 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:48,181 DEBUG Processing 96/654 atomic regions from SNP 28595 to 29196 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:48,194 DEBUG Processing 159/684 atomic regions from SNP 47437 to 48037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:48,205 DEBUG Processing 964/1054 atomic regions from SNP 288987 to 289587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,240 DEBUG Processing 260/775 atomic regions from SNP 77849 to 78449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:48,446 DEBUG Processing 79/664 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:48,635 DEBUG Processing 160/684 atomic regions from SNP 47737 to 48337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:48,650 DEBUG Processing 97/654 atomic regions from SNP 28896 to 29497 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:48,664 DEBUG Processing 261/775 atomic regions from SNP 78149 to 78749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:48,704 DEBUG Processing 965/1054 atomic regions from SNP 289287 to 289887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,720 DEBUG Processing 80/664 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:49,047 DEBUG Processing 161/684 atomic regions from SNP 48037 to 48637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:49,066 DEBUG Processing 98/654 atomic regions from SNP 29197 to 29798 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:49,101 DEBUG Processing 262/775 atomic regions from SNP 78449 to 79049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:49,132 DEBUG Processing 81/664 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:49,182 DEBUG Processing 966/1054 atomic regions from SNP 289587 to 290187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,261 DEBUG Processing 162/684 atomic regions from SNP 48337 to 48937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:49,293 DEBUG Processing 99/654 atomic regions from SNP 29498 to 30099 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:49,357 DEBUG Processing 263/775 atomic regions from SNP 78749 to 79349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:49,462 DEBUG Processing 82/664 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:49,601 DEBUG Processing 163/684 atomic regions from SNP 48637 to 49237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:49,638 DEBUG Processing 100/654 atomic regions from SNP 29799 to 30400 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:49,651 DEBUG Processing 967/1054 atomic regions from SNP 289887 to 290487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,673 DEBUG Processing 264/775 atomic regions from SNP 79049 to 79649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:49,750 DEBUG Processing 83/664 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:50,059 DEBUG Processing 164/684 atomic regions from SNP 48937 to 49537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:50,162 DEBUG Processing 101/654 atomic regions from SNP 30100 to 30701 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:50,189 DEBUG Processing 265/775 atomic regions from SNP 79349 to 79949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:50,216 DEBUG Processing 84/664 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:50,239 DEBUG Processing 968/1054 atomic regions from SNP 290187 to 290787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,451 DEBUG Processing 165/684 atomic regions from SNP 49237 to 49837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:50,544 DEBUG Processing 102/654 atomic regions from SNP 30401 to 31002 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:50,595 DEBUG Processing 266/775 atomic regions from SNP 79649 to 80249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:50,632 DEBUG Processing 85/664 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:50,702 DEBUG Processing 969/1054 atomic regions from SNP 290487 to 291087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,732 DEBUG Processing 166/684 atomic regions from SNP 49537 to 50137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:50,953 DEBUG Processing 103/654 atomic regions from SNP 30702 to 31303 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:51,030 DEBUG Processing 86/664 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:51,042 DEBUG Processing 267/775 atomic regions from SNP 79949 to 80549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:51,080 DEBUG Processing 167/684 atomic regions from SNP 49837 to 50437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:51,143 DEBUG Processing 970/1054 atomic regions from SNP 290787 to 291387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,191 DEBUG Processing 104/654 atomic regions from SNP 31003 to 31604 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:51,302 DEBUG Processing 87/664 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:51,344 DEBUG Processing 268/775 atomic regions from SNP 80249 to 80849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:51,370 DEBUG Processing 168/684 atomic regions from SNP 50137 to 50737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:51,564 DEBUG Processing 105/654 atomic regions from SNP 31304 to 31905 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:51,577 DEBUG Processing 971/1054 atomic regions from SNP 291087 to 291687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,645 DEBUG Processing 88/664 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:51,652 DEBUG Processing 169/684 atomic regions from SNP 50437 to 51037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:51,659 DEBUG Processing 269/775 atomic regions from SNP 80549 to 81149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:51,825 DEBUG Processing 106/654 atomic regions from SNP 31605 to 32206 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:51,885 DEBUG Processing 972/1054 atomic regions from SNP 291387 to 291987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,887 DEBUG Processing 89/664 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:51,892 DEBUG Processing 170/684 atomic regions from SNP 50737 to 51337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:51,918 DEBUG Processing 270/775 atomic regions from SNP 80849 to 81449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:52,070 DEBUG Processing 107/654 atomic regions from SNP 31906 to 32507 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:52,110 DEBUG Processing 171/684 atomic regions from SNP 51037 to 51637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:52,116 DEBUG Processing 90/664 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:52,160 DEBUG Processing 271/775 atomic regions from SNP 81149 to 81749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:52,173 DEBUG Processing 973/1054 atomic regions from SNP 291687 to 292287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,312 DEBUG Processing 108/654 atomic regions from SNP 32207 to 32808 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:52,325 DEBUG Processing 172/684 atomic regions from SNP 51337 to 51937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:52,345 DEBUG Processing 91/664 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:52,401 DEBUG Processing 272/775 atomic regions from SNP 81449 to 82049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:52,458 DEBUG Processing 974/1054 atomic regions from SNP 291987 to 292587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,534 DEBUG Processing 173/684 atomic regions from SNP 51637 to 52237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:52,562 DEBUG Processing 109/654 atomic regions from SNP 32508 to 33109 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:52,571 DEBUG Processing 92/664 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:52,642 DEBUG Processing 273/775 atomic regions from SNP 81749 to 82349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:52,738 DEBUG Processing 975/1054 atomic regions from SNP 292287 to 292887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,748 DEBUG Processing 174/684 atomic regions from SNP 51937 to 52537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:52,797 DEBUG Processing 93/664 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:52,814 DEBUG Processing 110/654 atomic regions from SNP 32809 to 33410 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:52,879 DEBUG Processing 274/775 atomic regions from SNP 82049 to 82649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:52,961 DEBUG Processing 175/684 atomic regions from SNP 52237 to 52837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:53,015 DEBUG Processing 976/1054 atomic regions from SNP 292587 to 293187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,018 DEBUG Processing 94/664 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:53,060 DEBUG Processing 111/654 atomic regions from SNP 33110 to 33711 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:53,116 DEBUG Processing 275/775 atomic regions from SNP 82349 to 82949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:53,169 DEBUG Processing 176/684 atomic regions from SNP 52537 to 53137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:53,254 DEBUG Processing 95/664 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:53,286 DEBUG Processing 112/654 atomic regions from SNP 33411 to 34012 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:53,299 DEBUG Processing 977/1054 atomic regions from SNP 292887 to 293487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,355 DEBUG Processing 276/775 atomic regions from SNP 82649 to 83249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:53,371 DEBUG Processing 177/684 atomic regions from SNP 52837 to 53437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:53,469 DEBUG Processing 96/664 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:53,501 DEBUG Processing 113/654 atomic regions from SNP 33712 to 34313 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:53,585 DEBUG Processing 178/684 atomic regions from SNP 53137 to 53737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:53,586 DEBUG Processing 978/1054 atomic regions from SNP 293187 to 293787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,598 DEBUG Processing 277/775 atomic regions from SNP 82949 to 83549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:53,687 DEBUG Processing 97/664 atomic regions from SNP 28896 to 29497 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:53,707 DEBUG Processing 114/654 atomic regions from SNP 34013 to 34614 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:53,737 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:43:53,794 DEBUG Processing 179/684 atomic regions from SNP 53437 to 54037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:53,837 DEBUG Processing 278/775 atomic regions from SNP 83249 to 83849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:53,873 DEBUG Processing 979/1054 atomic regions from SNP 293487 to 294087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,911 DEBUG Processing 98/664 atomic regions from SNP 29197 to 29798 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:53,918 DEBUG Processing 115/654 atomic regions from SNP 34314 to 34915 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:54,002 DEBUG Processing 180/684 atomic regions from SNP 53737 to 54337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:54,076 DEBUG Processing 279/775 atomic regions from SNP 83549 to 84149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:54,132 DEBUG Processing 116/654 atomic regions from SNP 34615 to 35216 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:54,138 DEBUG Processing 99/664 atomic regions from SNP 29498 to 30099 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:54,159 DEBUG Processing 980/1054 atomic regions from SNP 293787 to 294387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,213 DEBUG Processing 181/684 atomic regions from SNP 54037 to 54637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:54,307 DEBUG Processing 280/775 atomic regions from SNP 83849 to 84449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:54,356 DEBUG Processing 117/654 atomic regions from SNP 34916 to 35517 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:54,359 DEBUG Processing 100/664 atomic regions from SNP 29799 to 30400 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:54,425 DEBUG Processing 182/684 atomic regions from SNP 54337 to 54937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:54,446 DEBUG Processing 981/1054 atomic regions from SNP 294087 to 294687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,536 DEBUG Processing 281/775 atomic regions from SNP 84149 to 84749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:54,574 DEBUG Processing 101/664 atomic regions from SNP 30100 to 30701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:54,583 DEBUG Processing 118/654 atomic regions from SNP 35217 to 35818 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:54,638 DEBUG Processing 183/684 atomic regions from SNP 54637 to 55237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:54,736 DEBUG Processing 982/1054 atomic regions from SNP 294387 to 294987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,775 DEBUG Processing 282/775 atomic regions from SNP 84449 to 85049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:54,794 DEBUG Processing 102/664 atomic regions from SNP 30401 to 31002 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:54,794 DEBUG Processing 119/654 atomic regions from SNP 35518 to 36119 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:54,841 DEBUG Processing 184/684 atomic regions from SNP 54937 to 55537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:55,016 DEBUG Processing 120/654 atomic regions from SNP 35819 to 36420 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:55,022 DEBUG Processing 283/775 atomic regions from SNP 84749 to 85349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:55,023 DEBUG Processing 103/664 atomic regions from SNP 30702 to 31303 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:55,040 DEBUG Processing 983/1054 atomic regions from SNP 294687 to 295287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,048 DEBUG Processing 185/684 atomic regions from SNP 55237 to 55837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:55,246 DEBUG Processing 121/654 atomic regions from SNP 36120 to 36721 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:55,259 DEBUG Processing 104/664 atomic regions from SNP 31003 to 31604 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:55,271 DEBUG Processing 186/684 atomic regions from SNP 55537 to 56137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:55,272 DEBUG Processing 284/775 atomic regions from SNP 85049 to 85649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:55,336 DEBUG Processing 984/1054 atomic regions from SNP 294987 to 295587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,472 DEBUG Processing 122/654 atomic regions from SNP 36421 to 37022 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:55,480 DEBUG Processing 105/664 atomic regions from SNP 31304 to 31905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:55,494 DEBUG Processing 187/684 atomic regions from SNP 55837 to 56437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:55,509 DEBUG Processing 285/775 atomic regions from SNP 85349 to 85949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:55,611 DEBUG Processing 985/1054 atomic regions from SNP 295287 to 295887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,693 DEBUG Processing 123/654 atomic regions from SNP 36722 to 37323 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:55,697 DEBUG Processing 106/664 atomic regions from SNP 31605 to 32206 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:55,717 DEBUG Processing 188/684 atomic regions from SNP 56137 to 56737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:55,746 DEBUG Processing 286/775 atomic regions from SNP 85649 to 86249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:55,890 DEBUG Processing 986/1054 atomic regions from SNP 295587 to 296187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,906 DEBUG Processing 124/654 atomic regions from SNP 37023 to 37624 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:55,915 DEBUG Processing 107/664 atomic regions from SNP 31906 to 32507 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:55,928 DEBUG Processing 189/684 atomic regions from SNP 56437 to 57037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:55,980 DEBUG Processing 287/775 atomic regions from SNP 85949 to 86549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:56,115 DEBUG Processing 125/654 atomic regions from SNP 37324 to 37925 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:56,122 DEBUG Processing 108/664 atomic regions from SNP 32207 to 32808 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:56,132 DEBUG Processing 190/684 atomic regions from SNP 56737 to 57337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:56,160 DEBUG Processing 987/1054 atomic regions from SNP 295887 to 296487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,209 DEBUG Processing 288/775 atomic regions from SNP 86249 to 86849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:56,328 DEBUG Processing 126/654 atomic regions from SNP 37625 to 38226 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:56,332 DEBUG Processing 109/664 atomic regions from SNP 32508 to 33109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:56,339 DEBUG Processing 191/684 atomic regions from SNP 57037 to 57637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:56,433 DEBUG Processing 988/1054 atomic regions from SNP 296187 to 296787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,436 DEBUG Processing 289/775 atomic regions from SNP 86549 to 87149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:56,540 DEBUG Processing 127/654 atomic regions from SNP 37926 to 38527 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:56,543 DEBUG Processing 110/664 atomic regions from SNP 32809 to 33410 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:56,549 DEBUG Processing 192/684 atomic regions from SNP 57337 to 57937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:56,669 DEBUG Processing 290/775 atomic regions from SNP 86849 to 87449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:56,711 DEBUG Processing 989/1054 atomic regions from SNP 296487 to 297087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,748 DEBUG Processing 128/654 atomic regions from SNP 38227 to 38828 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:56,753 DEBUG Processing 193/684 atomic regions from SNP 57637 to 58237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:56,772 DEBUG Processing 111/664 atomic regions from SNP 33110 to 33711 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:56,896 DEBUG Processing 291/775 atomic regions from SNP 87149 to 87749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:56,956 DEBUG Processing 194/684 atomic regions from SNP 57937 to 58537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:56,958 DEBUG Processing 129/654 atomic regions from SNP 38528 to 39129 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:56,987 DEBUG Processing 990/1054 atomic regions from SNP 296787 to 297387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,990 DEBUG Processing 112/664 atomic regions from SNP 33411 to 34012 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:57,124 DEBUG Processing 292/775 atomic regions from SNP 87449 to 88049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:57,171 DEBUG Processing 195/684 atomic regions from SNP 58237 to 58837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:57,177 DEBUG Processing 130/654 atomic regions from SNP 38829 to 39430 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:57,211 DEBUG Processing 113/664 atomic regions from SNP 33712 to 34313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:57,269 DEBUG Processing 991/1054 atomic regions from SNP 297087 to 297687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,360 DEBUG Processing 293/775 atomic regions from SNP 87749 to 88349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:57,391 DEBUG Processing 196/684 atomic regions from SNP 58537 to 59137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:57,401 DEBUG Processing 131/654 atomic regions from SNP 39130 to 39731 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:57,428 DEBUG Processing 114/664 atomic regions from SNP 34013 to 34614 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:57,569 DEBUG Processing 992/1054 atomic regions from SNP 297387 to 297987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,593 DEBUG Processing 294/775 atomic regions from SNP 88049 to 88649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:57,613 DEBUG Processing 197/684 atomic regions from SNP 58837 to 59437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:57,627 DEBUG Processing 132/654 atomic regions from SNP 39431 to 40032 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:57,648 DEBUG Processing 115/664 atomic regions from SNP 34314 to 34915 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:57,835 DEBUG Processing 295/775 atomic regions from SNP 88349 to 88949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:57,858 DEBUG Processing 993/1054 atomic regions from SNP 297687 to 298287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,861 DEBUG Processing 133/654 atomic regions from SNP 39732 to 40333 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:57,861 DEBUG Processing 198/684 atomic regions from SNP 59137 to 59737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:57,880 DEBUG Processing 116/664 atomic regions from SNP 34615 to 35216 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:58,065 DEBUG Processing 296/775 atomic regions from SNP 88649 to 89249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:58,080 DEBUG Processing 134/654 atomic regions from SNP 40033 to 40634 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:58,089 DEBUG Processing 199/684 atomic regions from SNP 59437 to 60037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:58,106 DEBUG Processing 117/664 atomic regions from SNP 34916 to 35517 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:58,140 DEBUG Processing 994/1054 atomic regions from SNP 297987 to 298587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,291 DEBUG Processing 297/775 atomic regions from SNP 88949 to 89549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:58,292 DEBUG Processing 135/654 atomic regions from SNP 40334 to 40935 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:58,299 DEBUG Processing 200/684 atomic regions from SNP 59737 to 60337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:58,325 DEBUG Processing 118/664 atomic regions from SNP 35217 to 35818 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:58,443 DEBUG Processing 995/1054 atomic regions from SNP 298287 to 298887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,506 DEBUG Processing 136/654 atomic regions from SNP 40635 to 41236 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:58,510 DEBUG Processing 201/684 atomic regions from SNP 60037 to 60637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:58,520 DEBUG Processing 298/775 atomic regions from SNP 89249 to 89849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:58,534 DEBUG Processing 119/664 atomic regions from SNP 35518 to 36119 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:58,726 DEBUG Processing 202/684 atomic regions from SNP 60337 to 60937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:58,727 DEBUG Processing 137/654 atomic regions from SNP 40936 to 41537 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:58,744 DEBUG Processing 996/1054 atomic regions from SNP 298587 to 299187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,755 DEBUG Processing 299/775 atomic regions from SNP 89549 to 90149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:58,757 DEBUG Processing 120/664 atomic regions from SNP 35819 to 36420 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:58,937 DEBUG Processing 203/684 atomic regions from SNP 60637 to 61237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:58,942 DEBUG Processing 138/654 atomic regions from SNP 41237 to 41838 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:58,983 DEBUG Processing 121/664 atomic regions from SNP 36120 to 36721 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:58,996 DEBUG Processing 300/775 atomic regions from SNP 89849 to 90449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:59,029 DEBUG Processing 997/1054 atomic regions from SNP 298887 to 299487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,144 DEBUG Processing 204/684 atomic regions from SNP 60937 to 61537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:59,154 DEBUG Processing 139/654 atomic regions from SNP 41538 to 42139 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:59,202 DEBUG Processing 122/664 atomic regions from SNP 36421 to 37022 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:59,234 DEBUG Processing 301/775 atomic regions from SNP 90149 to 90749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:59,318 DEBUG Processing 998/1054 atomic regions from SNP 299187 to 299787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,352 DEBUG Processing 205/684 atomic regions from SNP 61237 to 61837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:59,365 DEBUG Processing 140/654 atomic regions from SNP 41839 to 42440 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:59,419 DEBUG Processing 123/664 atomic regions from SNP 36722 to 37323 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:59,472 DEBUG Processing 302/775 atomic regions from SNP 90449 to 91049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:59,575 DEBUG Processing 206/684 atomic regions from SNP 61537 to 62137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:59,588 DEBUG Processing 141/654 atomic regions from SNP 42140 to 42741 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:59,614 DEBUG Processing 999/1054 atomic regions from SNP 299487 to 300087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,634 DEBUG Processing 124/664 atomic regions from SNP 37023 to 37624 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:59,697 DEBUG Processing 303/775 atomic regions from SNP 90749 to 91349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:43:59,800 DEBUG Processing 207/684 atomic regions from SNP 61837 to 62437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:43:59,817 DEBUG Processing 142/654 atomic regions from SNP 42441 to 43042 for chr7 (subchromosome 4 of 4). 2025-01-31 09:43:59,863 DEBUG Processing 125/664 atomic regions from SNP 37324 to 37925 for chr8 (subchromosome 1 of 1). 2025-01-31 09:43:59,908 DEBUG Processing 1000/1054 atomic regions from SNP 299787 to 300387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,929 DEBUG Processing 304/775 atomic regions from SNP 91049 to 91649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:00,051 DEBUG Processing 208/684 atomic regions from SNP 62137 to 62737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:00,081 DEBUG Processing 143/654 atomic regions from SNP 42742 to 43343 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:00,125 DEBUG Processing 126/664 atomic regions from SNP 37625 to 38226 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:00,196 DEBUG Processing 305/775 atomic regions from SNP 91349 to 91949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:00,225 DEBUG Processing 1001/1054 atomic regions from SNP 300087 to 300687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,267 DEBUG Processing 209/684 atomic regions from SNP 62437 to 63037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:00,300 DEBUG Processing 144/654 atomic regions from SNP 43043 to 43644 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:00,346 DEBUG Processing 127/664 atomic regions from SNP 37926 to 38527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:00,488 DEBUG Processing 306/775 atomic regions from SNP 91649 to 92249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:00,608 DEBUG Processing 1002/1054 atomic regions from SNP 300387 to 300987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,611 DEBUG Processing 210/684 atomic regions from SNP 62737 to 63337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:00,622 DEBUG Processing 145/654 atomic regions from SNP 43344 to 43945 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:00,652 DEBUG Processing 128/664 atomic regions from SNP 38227 to 38828 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:00,822 DEBUG Processing 307/775 atomic regions from SNP 91949 to 92549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:00,977 DEBUG Processing 129/664 atomic regions from SNP 38528 to 39129 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:00,985 DEBUG Processing 146/654 atomic regions from SNP 43645 to 44246 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:00,985 DEBUG Processing 211/684 atomic regions from SNP 63037 to 63637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:01,026 DEBUG Processing 1003/1054 atomic regions from SNP 300687 to 301287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,081 DEBUG Processing 308/775 atomic regions from SNP 92249 to 92849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:01,251 DEBUG Processing 130/664 atomic regions from SNP 38829 to 39430 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:01,291 DEBUG Processing 147/654 atomic regions from SNP 43946 to 44547 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:01,305 DEBUG Processing 212/684 atomic regions from SNP 63337 to 63937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:01,372 DEBUG Processing 309/775 atomic regions from SNP 92549 to 93149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:01,393 DEBUG Processing 1004/1054 atomic regions from SNP 300987 to 301587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,457 DEBUG Processing 131/664 atomic regions from SNP 39130 to 39731 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:01,507 DEBUG Processing 148/654 atomic regions from SNP 44247 to 44848 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:01,523 DEBUG Processing 213/684 atomic regions from SNP 63637 to 64237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:01,620 DEBUG Processing 310/775 atomic regions from SNP 92849 to 93449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:01,687 DEBUG Processing 1005/1054 atomic regions from SNP 301287 to 301887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,689 DEBUG Processing 132/664 atomic regions from SNP 39431 to 40032 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:01,750 DEBUG Processing 149/654 atomic regions from SNP 44548 to 45149 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:01,758 DEBUG Processing 214/684 atomic regions from SNP 63937 to 64537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:01,920 DEBUG Processing 311/775 atomic regions from SNP 93149 to 93749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:01,997 DEBUG Processing 133/664 atomic regions from SNP 39732 to 40333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:02,065 DEBUG Processing 1006/1054 atomic regions from SNP 301587 to 302187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,067 DEBUG Processing 150/654 atomic regions from SNP 44849 to 45450 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:02,090 DEBUG Processing 215/684 atomic regions from SNP 64237 to 64837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:02,254 DEBUG Processing 312/775 atomic regions from SNP 93449 to 94049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:02,293 DEBUG Processing 134/664 atomic regions from SNP 40033 to 40634 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:02,466 DEBUG Processing 151/654 atomic regions from SNP 45150 to 45751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:02,490 DEBUG Processing 216/684 atomic regions from SNP 64537 to 65137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:02,534 DEBUG Processing 1007/1054 atomic regions from SNP 301887 to 302487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,667 DEBUG Processing 135/664 atomic regions from SNP 40334 to 40935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:02,667 DEBUG Processing 313/775 atomic regions from SNP 93749 to 94349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:02,868 DEBUG Processing 152/654 atomic regions from SNP 45451 to 46052 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:02,876 DEBUG Processing 217/684 atomic regions from SNP 64837 to 65437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:03,039 DEBUG Processing 1008/1054 atomic regions from SNP 302187 to 302787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,105 DEBUG Processing 136/664 atomic regions from SNP 40635 to 41236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:03,120 DEBUG Processing 314/775 atomic regions from SNP 94049 to 94649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:03,160 DEBUG Processing 218/684 atomic regions from SNP 65137 to 65737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:03,163 DEBUG Processing 153/654 atomic regions from SNP 45752 to 46353 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:03,323 DEBUG Processing 1009/1054 atomic regions from SNP 302487 to 303087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,360 DEBUG Processing 137/664 atomic regions from SNP 40936 to 41537 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:03,393 DEBUG Processing 315/775 atomic regions from SNP 94349 to 94949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:03,410 DEBUG Processing 154/654 atomic regions from SNP 46053 to 46654 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:03,413 DEBUG Processing 219/684 atomic regions from SNP 65437 to 66037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:03,637 DEBUG Processing 1010/1054 atomic regions from SNP 302787 to 303387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,649 DEBUG Processing 138/664 atomic regions from SNP 41237 to 41838 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:03,724 DEBUG Processing 316/775 atomic regions from SNP 94649 to 95249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:03,733 DEBUG Processing 220/684 atomic regions from SNP 65737 to 66337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:03,735 DEBUG Processing 155/654 atomic regions from SNP 46354 to 46955 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:03,954 DEBUG Processing 139/664 atomic regions from SNP 41538 to 42139 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:04,002 DEBUG Processing 1011/1054 atomic regions from SNP 303087 to 303687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,110 DEBUG Processing 317/775 atomic regions from SNP 94949 to 95549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:04,133 DEBUG Processing 221/684 atomic regions from SNP 66037 to 66637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:04,141 DEBUG Processing 156/654 atomic regions from SNP 46655 to 47256 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:04,290 DEBUG Processing 140/664 atomic regions from SNP 41839 to 42440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:04,378 DEBUG Processing 1012/1054 atomic regions from SNP 303387 to 303987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,568 DEBUG Processing 318/775 atomic regions from SNP 95249 to 95849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:04,575 DEBUG Processing 222/684 atomic regions from SNP 66337 to 66937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:04,593 DEBUG Processing 157/654 atomic regions from SNP 46956 to 47557 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:04,756 DEBUG Processing 141/664 atomic regions from SNP 42140 to 42741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:04,848 DEBUG Processing 1013/1054 atomic regions from SNP 303687 to 304287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,088 DEBUG Processing 223/684 atomic regions from SNP 66637 to 67237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:05,088 DEBUG Processing 158/654 atomic regions from SNP 47257 to 47858 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:05,098 DEBUG Processing 319/775 atomic regions from SNP 95549 to 96149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:05,288 DEBUG Processing 142/664 atomic regions from SNP 42441 to 43042 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:05,394 DEBUG Processing 1014/1054 atomic regions from SNP 303987 to 304587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,609 DEBUG Processing 224/684 atomic regions from SNP 66937 to 67537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:05,624 DEBUG Processing 159/654 atomic regions from SNP 47558 to 48159 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:05,648 DEBUG Processing 320/775 atomic regions from SNP 95849 to 96449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:05,837 DEBUG Processing 143/664 atomic regions from SNP 42742 to 43343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:05,967 DEBUG Processing 1015/1054 atomic regions from SNP 304287 to 304887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,169 DEBUG Processing 225/684 atomic regions from SNP 67237 to 67837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:06,197 DEBUG Processing 160/654 atomic regions from SNP 47859 to 48460 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:06,246 DEBUG Processing 321/775 atomic regions from SNP 96149 to 96749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:06,398 DEBUG Processing 144/664 atomic regions from SNP 43043 to 43644 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:06,537 DEBUG Processing 226/684 atomic regions from SNP 67537 to 68137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:06,544 DEBUG Processing 1016/1054 atomic regions from SNP 304587 to 305187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,549 DEBUG Processing 161/654 atomic regions from SNP 48160 to 48761 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:06,565 DEBUG Processing 322/775 atomic regions from SNP 96449 to 97049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:06,753 DEBUG Processing 145/664 atomic regions from SNP 43344 to 43945 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:06,859 DEBUG Processing 227/684 atomic regions from SNP 67837 to 68437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:06,870 DEBUG Processing 162/654 atomic regions from SNP 48461 to 49062 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:06,894 DEBUG Processing 323/775 atomic regions from SNP 96749 to 97349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:06,933 DEBUG Processing 1017/1054 atomic regions from SNP 304887 to 305487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,985 DEBUG Processing 146/664 atomic regions from SNP 43645 to 44246 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:07,198 DEBUG Processing 228/684 atomic regions from SNP 68137 to 68737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:07,234 DEBUG Processing 163/654 atomic regions from SNP 48762 to 49363 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:07,335 DEBUG Processing 324/775 atomic regions from SNP 97049 to 97649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:07,423 DEBUG Processing 147/664 atomic regions from SNP 43946 to 44547 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:07,438 DEBUG Processing 1018/1054 atomic regions from SNP 305187 to 305787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,549 DEBUG Processing 229/684 atomic regions from SNP 68437 to 69037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:07,612 DEBUG Processing 164/654 atomic regions from SNP 49063 to 49664 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:07,718 DEBUG Processing 325/775 atomic regions from SNP 97349 to 97949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:07,927 DEBUG Processing 148/664 atomic regions from SNP 44247 to 44848 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:08,083 DEBUG Processing 1019/1054 atomic regions from SNP 305487 to 306087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,102 DEBUG Processing 230/684 atomic regions from SNP 68737 to 69337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:08,153 DEBUG Processing 165/654 atomic regions from SNP 49364 to 49965 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:08,214 DEBUG Processing 326/775 atomic regions from SNP 97649 to 98249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:08,328 DEBUG Processing 149/664 atomic regions from SNP 44548 to 45149 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:08,565 DEBUG Processing 231/684 atomic regions from SNP 69037 to 69637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:08,598 DEBUG Processing 166/654 atomic regions from SNP 49665 to 50266 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:08,609 DEBUG Processing 1020/1054 atomic regions from SNP 305787 to 306387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,625 DEBUG Processing 327/775 atomic regions from SNP 97949 to 98549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:08,626 DEBUG Processing 150/664 atomic regions from SNP 44849 to 45450 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:08,665 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:44:08,667 DEBUG chr14: Signal quantile: 0.994. signal threshold: 6. Best RMSEA: 0.036 2025-01-31 09:44:08,790 DEBUG Processing 232/684 atomic regions from SNP 69337 to 69937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:08,831 DEBUG Processing 167/654 atomic regions from SNP 49966 to 50567 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:08,876 DEBUG Processing 151/664 atomic regions from SNP 45150 to 45751 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:08,900 DEBUG Processing 328/775 atomic regions from SNP 98249 to 98849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:08,924 DEBUG Processing 1021/1054 atomic regions from SNP 306087 to 306687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,049 DEBUG Processing 233/684 atomic regions from SNP 69637 to 70237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:09,105 DEBUG Processing 168/654 atomic regions from SNP 50267 to 50868 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:09,213 DEBUG Processing 152/664 atomic regions from SNP 45451 to 46052 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:09,272 DEBUG Processing 329/775 atomic regions from SNP 98549 to 99149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:09,374 DEBUG Processing 1022/1054 atomic regions from SNP 306387 to 306987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,413 DEBUG Processing 234/684 atomic regions from SNP 69937 to 70537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:09,436 DEBUG Processing 169/654 atomic regions from SNP 50568 to 51169 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:09,499 DEBUG Processing 153/664 atomic regions from SNP 45752 to 46353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:09,546 DEBUG Processing 330/775 atomic regions from SNP 98849 to 99449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:09,937 DEBUG Processing 235/684 atomic regions from SNP 70237 to 70837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:09,945 DEBUG Processing 1023/1054 atomic regions from SNP 306687 to 307287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,949 DEBUG Processing 170/654 atomic regions from SNP 50869 to 51470 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:09,991 DEBUG Processing 154/664 atomic regions from SNP 46053 to 46654 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:10,077 DEBUG Processing 331/775 atomic regions from SNP 99149 to 99749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:10,497 DEBUG Processing 236/684 atomic regions from SNP 70537 to 71137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:10,530 DEBUG Processing 171/654 atomic regions from SNP 51170 to 51771 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:10,546 DEBUG Processing 155/664 atomic regions from SNP 46354 to 46955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:10,590 DEBUG Processing 1024/1054 atomic regions from SNP 306987 to 307587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,677 DEBUG Processing 332/775 atomic regions from SNP 99449 to 100049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:10,943 DEBUG Processing 237/684 atomic regions from SNP 70837 to 71437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:11,009 DEBUG Processing 156/664 atomic regions from SNP 46655 to 47256 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:11,013 DEBUG Processing 172/654 atomic regions from SNP 51471 to 52072 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:11,151 DEBUG Processing 1025/1054 atomic regions from SNP 307287 to 307887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,169 DEBUG Processing 333/775 atomic regions from SNP 99749 to 100349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:11,374 DEBUG Processing 238/684 atomic regions from SNP 71137 to 71737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:11,452 DEBUG Processing 173/654 atomic regions from SNP 51772 to 52373 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:11,465 DEBUG Processing 157/664 atomic regions from SNP 46956 to 47557 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:11,610 DEBUG Processing 334/775 atomic regions from SNP 100049 to 100649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:11,632 DEBUG Processing 239/684 atomic regions from SNP 71437 to 72037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:11,656 DEBUG Processing 1026/1054 atomic regions from SNP 307587 to 308187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,676 DEBUG Processing 174/654 atomic regions from SNP 52073 to 52674 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:11,703 DEBUG Processing 158/664 atomic regions from SNP 47257 to 47858 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:11,938 DEBUG Processing 240/684 atomic regions from SNP 71737 to 72337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:11,939 DEBUG Processing 335/775 atomic regions from SNP 100349 to 100949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:11,989 DEBUG Processing 175/654 atomic regions from SNP 52374 to 52975 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:12,013 DEBUG Processing 159/664 atomic regions from SNP 47558 to 48159 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:12,050 DEBUG Processing 1027/1054 atomic regions from SNP 307887 to 308487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,181 DEBUG Processing 241/684 atomic regions from SNP 72037 to 72637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:12,199 DEBUG Processing 336/775 atomic regions from SNP 100649 to 101249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:12,297 DEBUG Processing 176/654 atomic regions from SNP 52675 to 53276 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:12,360 DEBUG Processing 160/664 atomic regions from SNP 47859 to 48460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:12,489 DEBUG Processing 1028/1054 atomic regions from SNP 308187 to 308787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,558 DEBUG Processing 242/684 atomic regions from SNP 72337 to 72937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:12,622 DEBUG Processing 337/775 atomic regions from SNP 100949 to 101549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:12,652 DEBUG Processing 177/654 atomic regions from SNP 52976 to 53577 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:12,662 DEBUG Processing 161/664 atomic regions from SNP 48160 to 48761 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:12,848 DEBUG Processing 243/684 atomic regions from SNP 72637 to 73237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:12,856 DEBUG Processing 1029/1054 atomic regions from SNP 308487 to 309087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,903 DEBUG Processing 338/775 atomic regions from SNP 101249 to 101849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:12,927 DEBUG chr14 total SNP count: 177737 2025-01-31 09:44:12,927 DEBUG chr14 length: 124902244 2025-01-31 09:44:12,927 DEBUG ----------------------------------------- 2025-01-31 09:44:12,927 INFO Processing SNPs in chr14 2025-01-31 09:44:12,937 DEBUG Processing 178/654 atomic regions from SNP 53277 to 53878 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:12,943 DEBUG Processing 162/664 atomic regions from SNP 48461 to 49062 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:13,181 DEBUG Processing 244/684 atomic regions from SNP 72937 to 73537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:13,239 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 84), (84, 177737)] 2025-01-31 09:44:13,289 DEBUG Processing 339/775 atomic regions from SNP 101549 to 102149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:13,292 DEBUG Processing 163/664 atomic regions from SNP 48762 to 49363 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:13,297 DEBUG Processing 179/654 atomic regions from SNP 53578 to 54179 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:13,314 DEBUG Processing 1030/1054 atomic regions from SNP 308787 to 309387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,375 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:13,471 DEBUG Processing 245/684 atomic regions from SNP 73237 to 73837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:13,674 DEBUG Processing 164/664 atomic regions from SNP 49063 to 49664 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:13,678 DEBUG Processing 180/654 atomic regions from SNP 53879 to 54480 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:13,690 DEBUG Processing 340/775 atomic regions from SNP 101849 to 102449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:13,730 DEBUG Processing 246/684 atomic regions from SNP 73537 to 74137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:13,739 DEBUG Processing 1031/1054 atomic regions from SNP 309087 to 309687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,935 DEBUG Processing 165/664 atomic regions from SNP 49364 to 49965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:13,937 DEBUG Processing 181/654 atomic regions from SNP 54180 to 54781 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:13,977 DEBUG Processing 247/684 atomic regions from SNP 73837 to 74437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:13,979 DEBUG Processing 341/775 atomic regions from SNP 102149 to 102749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:14,116 DEBUG Processing 1032/1054 atomic regions from SNP 309387 to 309987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,153 DEBUG Processing 182/654 atomic regions from SNP 54481 to 55082 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:14,159 DEBUG Processing 166/664 atomic regions from SNP 49665 to 50266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:14,196 DEBUG Processing 248/684 atomic regions from SNP 74137 to 74737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:14,234 DEBUG Processing 342/775 atomic regions from SNP 102449 to 103049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:14,364 DEBUG Processing 183/654 atomic regions from SNP 54782 to 55383 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:14,384 DEBUG Processing 167/664 atomic regions from SNP 49966 to 50567 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:14,403 DEBUG Processing 249/684 atomic regions from SNP 74437 to 75037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:14,446 DEBUG Processing 1033/1054 atomic regions from SNP 309687 to 310287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,481 DEBUG Processing 343/775 atomic regions from SNP 102749 to 103349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:14,597 DEBUG Processing 184/654 atomic regions from SNP 55083 to 55684 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:14,626 DEBUG Processing 168/664 atomic regions from SNP 50267 to 50868 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:14,637 DEBUG Processing 250/684 atomic regions from SNP 74737 to 75337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:14,755 DEBUG Processing 344/775 atomic regions from SNP 103049 to 103649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:14,768 DEBUG Processing 1034/1054 atomic regions from SNP 309987 to 310587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,830 DEBUG Processing 185/654 atomic regions from SNP 55384 to 55985 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:14,853 DEBUG Processing 169/664 atomic regions from SNP 50568 to 51169 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:14,857 DEBUG Processing 251/684 atomic regions from SNP 75037 to 75637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:14,992 DEBUG Processing 345/775 atomic regions from SNP 103349 to 103949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:15,043 DEBUG Processing 186/654 atomic regions from SNP 55685 to 56286 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:15,064 DEBUG Processing 1035/1054 atomic regions from SNP 310287 to 310887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,069 DEBUG Processing 252/684 atomic regions from SNP 75337 to 75937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:15,080 DEBUG Processing 170/664 atomic regions from SNP 50869 to 51470 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:15,230 DEBUG Processing 346/775 atomic regions from SNP 103649 to 104249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:15,256 DEBUG Processing 187/654 atomic regions from SNP 55986 to 56587 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:15,276 DEBUG Processing 253/684 atomic regions from SNP 75637 to 76237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:15,308 DEBUG Processing 171/664 atomic regions from SNP 51170 to 51771 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:15,374 DEBUG Processing 1036/1054 atomic regions from SNP 310587 to 311187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,457 DEBUG Processing 347/775 atomic regions from SNP 103949 to 104549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:15,471 DEBUG Processing 188/654 atomic regions from SNP 56287 to 56888 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:15,486 DEBUG Processing 254/684 atomic regions from SNP 75937 to 76537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:15,529 DEBUG Processing 172/664 atomic regions from SNP 51471 to 52072 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:15,666 DEBUG Processing 1037/1054 atomic regions from SNP 310887 to 311487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,694 DEBUG Processing 189/654 atomic regions from SNP 56588 to 57189 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:15,694 DEBUG Processing 348/775 atomic regions from SNP 104249 to 104849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:15,704 DEBUG Processing 255/684 atomic regions from SNP 76237 to 76837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:15,750 DEBUG Processing 173/664 atomic regions from SNP 51772 to 52373 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:15,913 DEBUG Processing 190/654 atomic regions from SNP 56889 to 57490 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:15,921 DEBUG Processing 256/684 atomic regions from SNP 76537 to 77137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:15,935 DEBUG Processing 349/775 atomic regions from SNP 104549 to 105149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:15,953 DEBUG Processing 1038/1054 atomic regions from SNP 311187 to 311787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,970 DEBUG Processing 174/664 atomic regions from SNP 52073 to 52674 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:16,145 DEBUG Processing 191/654 atomic regions from SNP 57190 to 57791 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:16,146 DEBUG Processing 257/684 atomic regions from SNP 76837 to 77437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:16,191 DEBUG Processing 350/775 atomic regions from SNP 104849 to 105449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:16,202 DEBUG Processing 175/664 atomic regions from SNP 52374 to 52975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:16,248 DEBUG Processing 1039/1054 atomic regions from SNP 311487 to 312087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,357 DEBUG Processing 258/684 atomic regions from SNP 77137 to 77737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:16,360 DEBUG Processing 192/654 atomic regions from SNP 57491 to 58092 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:16,426 DEBUG Processing 176/664 atomic regions from SNP 52675 to 53276 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:16,430 DEBUG Processing 351/775 atomic regions from SNP 105149 to 105749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:16,534 DEBUG Processing 1040/1054 atomic regions from SNP 311787 to 312387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,568 DEBUG Processing 259/684 atomic regions from SNP 77437 to 78037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:16,575 DEBUG Processing 193/654 atomic regions from SNP 57792 to 58393 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:16,643 DEBUG Processing 177/664 atomic regions from SNP 52976 to 53577 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:16,689 DEBUG Processing 352/775 atomic regions from SNP 105449 to 106049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:16,778 DEBUG Processing 260/684 atomic regions from SNP 77737 to 78337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:16,788 DEBUG Processing 194/654 atomic regions from SNP 58093 to 58694 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:16,815 DEBUG Processing 1041/1054 atomic regions from SNP 312087 to 312687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,850 DEBUG Processing 178/664 atomic regions from SNP 53277 to 53878 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:16,914 DEBUG Processing 353/775 atomic regions from SNP 105749 to 106349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:16,991 DEBUG Processing 261/684 atomic regions from SNP 78037 to 78637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:17,019 DEBUG Processing 195/654 atomic regions from SNP 58394 to 58995 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:17,063 DEBUG Processing 179/664 atomic regions from SNP 53578 to 54179 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:17,090 DEBUG Processing 1042/1054 atomic regions from SNP 312387 to 312987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,140 DEBUG Processing 354/775 atomic regions from SNP 106049 to 106649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:17,206 DEBUG Processing 262/684 atomic regions from SNP 78337 to 78937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:17,235 DEBUG Processing 196/654 atomic regions from SNP 58695 to 59296 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:17,285 DEBUG Processing 180/664 atomic regions from SNP 53879 to 54480 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:17,362 DEBUG Processing 355/775 atomic regions from SNP 106349 to 106949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:17,366 DEBUG Processing 1043/1054 atomic regions from SNP 312687 to 313287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,422 DEBUG Processing 263/684 atomic regions from SNP 78637 to 79237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:17,456 DEBUG Processing 197/654 atomic regions from SNP 58996 to 59597 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:17,506 DEBUG Processing 181/664 atomic regions from SNP 54180 to 54781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:17,585 DEBUG Processing 356/775 atomic regions from SNP 106649 to 107249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:17,629 DEBUG Processing 264/684 atomic regions from SNP 78937 to 79537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:17,635 DEBUG Processing 1044/1054 atomic regions from SNP 312987 to 313587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,672 DEBUG Processing 198/654 atomic regions from SNP 59297 to 59898 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:17,730 DEBUG Processing 182/664 atomic regions from SNP 54481 to 55082 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:17,821 DEBUG Processing 357/775 atomic regions from SNP 106949 to 107549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:17,835 DEBUG Processing 265/684 atomic regions from SNP 79237 to 79837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:17,883 DEBUG Processing 199/654 atomic regions from SNP 59598 to 60199 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:17,905 DEBUG Processing 1045/1054 atomic regions from SNP 313287 to 313887 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,944 DEBUG Processing 183/664 atomic regions from SNP 54782 to 55383 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:18,052 DEBUG Processing 266/684 atomic regions from SNP 79537 to 80137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:18,070 DEBUG Processing 358/775 atomic regions from SNP 107249 to 107849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:18,097 DEBUG Processing 200/654 atomic regions from SNP 59899 to 60500 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:18,150 DEBUG Processing 184/664 atomic regions from SNP 55083 to 55684 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:18,176 DEBUG Processing 1046/1054 atomic regions from SNP 313587 to 314187 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,266 DEBUG Processing 267/684 atomic regions from SNP 79837 to 80437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:18,314 DEBUG Processing 359/775 atomic regions from SNP 107549 to 108149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:18,322 DEBUG Processing 201/654 atomic regions from SNP 60200 to 60801 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:18,375 DEBUG Processing 185/664 atomic regions from SNP 55384 to 55985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:18,462 DEBUG Processing 1047/1054 atomic regions from SNP 313887 to 314487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,476 DEBUG Processing 268/684 atomic regions from SNP 80137 to 80737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:18,545 DEBUG Processing 202/654 atomic regions from SNP 60501 to 61102 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:18,555 DEBUG Processing 360/775 atomic regions from SNP 107849 to 108449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:18,603 DEBUG Processing 186/664 atomic regions from SNP 55685 to 56286 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:18,675 DEBUG Processing 269/684 atomic regions from SNP 80437 to 81037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:18,736 DEBUG Processing 1048/1054 atomic regions from SNP 314187 to 314787 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,757 DEBUG Processing 203/654 atomic regions from SNP 60802 to 61403 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:18,792 DEBUG Processing 361/775 atomic regions from SNP 108149 to 108749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:18,826 DEBUG Processing 187/664 atomic regions from SNP 55986 to 56587 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:18,889 DEBUG Processing 270/684 atomic regions from SNP 80737 to 81337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:18,965 DEBUG Processing 204/654 atomic regions from SNP 61103 to 61704 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:19,006 DEBUG Processing 1049/1054 atomic regions from SNP 314487 to 315087 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,039 DEBUG Processing 362/775 atomic regions from SNP 108449 to 109049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:19,040 DEBUG Processing 188/664 atomic regions from SNP 56287 to 56888 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:19,108 DEBUG Processing 271/684 atomic regions from SNP 81037 to 81637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:19,179 DEBUG Processing 205/654 atomic regions from SNP 61404 to 62005 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:19,260 DEBUG Processing 189/664 atomic regions from SNP 56588 to 57189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:19,283 DEBUG Processing 363/775 atomic regions from SNP 108749 to 109349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:19,285 DEBUG Processing 1050/1054 atomic regions from SNP 314787 to 315387 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,324 DEBUG Processing 272/684 atomic regions from SNP 81337 to 81937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:19,401 DEBUG Processing 206/654 atomic regions from SNP 61705 to 62306 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:19,479 DEBUG Processing 190/664 atomic regions from SNP 56889 to 57490 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:19,518 DEBUG Processing 364/775 atomic regions from SNP 109049 to 109649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:19,534 DEBUG Processing 273/684 atomic regions from SNP 81637 to 82237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:19,566 DEBUG Processing 1051/1054 atomic regions from SNP 315087 to 315687 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,613 DEBUG Processing 207/654 atomic regions from SNP 62006 to 62607 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:19,699 DEBUG Processing 191/664 atomic regions from SNP 57190 to 57791 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:19,750 DEBUG Processing 274/684 atomic regions from SNP 81937 to 82537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:19,757 DEBUG Processing 365/775 atomic regions from SNP 109349 to 109949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:19,826 DEBUG Processing 208/654 atomic regions from SNP 62307 to 62908 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:19,847 DEBUG Processing 1052/1054 atomic regions from SNP 315387 to 315987 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,913 DEBUG Processing 192/664 atomic regions from SNP 57491 to 58092 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:19,969 DEBUG Processing 275/684 atomic regions from SNP 82237 to 82837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:19,992 DEBUG Processing 366/775 atomic regions from SNP 109649 to 110249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:20,043 DEBUG Processing 209/654 atomic regions from SNP 62608 to 63209 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:20,128 DEBUG Processing 1053/1054 atomic regions from SNP 315687 to 316287 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,129 DEBUG Processing 193/664 atomic regions from SNP 57792 to 58393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:20,181 DEBUG Processing 276/684 atomic regions from SNP 82537 to 83137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:20,223 DEBUG Processing 367/775 atomic regions from SNP 109949 to 110549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:20,264 DEBUG Processing 210/654 atomic regions from SNP 62909 to 63510 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:20,355 DEBUG Processing 194/664 atomic regions from SNP 58093 to 58694 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:20,390 DEBUG Processing 277/684 atomic regions from SNP 82837 to 83437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:20,413 DEBUG Processing 1054/1054 atomic regions from SNP 315987 to 316587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,459 DEBUG Processing 368/775 atomic regions from SNP 110249 to 110849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:20,474 DEBUG Processing 211/654 atomic regions from SNP 63210 to 63811 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:20,560 DEBUG Unique SNPs positions in subchromosome 1: 316588 2025-01-31 09:44:20,573 DEBUG Processing 195/664 atomic regions from SNP 58394 to 58995 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:20,607 DEBUG Processing 278/684 atomic regions from SNP 83137 to 83737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:20,686 DEBUG Processing 212/654 atomic regions from SNP 63511 to 64112 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:20,698 DEBUG Processing 369/775 atomic regions from SNP 110549 to 111149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:20,782 DEBUG Processing 196/664 atomic regions from SNP 58695 to 59296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:20,819 DEBUG Processing 279/684 atomic regions from SNP 83437 to 84037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:20,905 DEBUG Processing 213/654 atomic regions from SNP 63812 to 64413 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:20,930 DEBUG Processing 370/775 atomic regions from SNP 110849 to 111449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:21,003 DEBUG Processing 197/664 atomic regions from SNP 58996 to 59597 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:21,023 DEBUG Processing 280/684 atomic regions from SNP 83737 to 84337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:21,124 DEBUG Processing 214/654 atomic regions from SNP 64113 to 64714 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:21,153 DEBUG Processing 371/775 atomic regions from SNP 111149 to 111749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:21,222 DEBUG Processing 198/664 atomic regions from SNP 59297 to 59898 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:21,228 DEBUG Processing 281/684 atomic regions from SNP 84037 to 84637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:21,337 DEBUG Processing 215/654 atomic regions from SNP 64414 to 65015 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:21,377 DEBUG Processing 372/775 atomic regions from SNP 111449 to 112049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:21,432 DEBUG Processing 199/664 atomic regions from SNP 59598 to 60199 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:21,440 DEBUG Processing 282/684 atomic regions from SNP 84337 to 84937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:21,548 DEBUG Processing 216/654 atomic regions from SNP 64715 to 65316 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:21,606 DEBUG Processing 373/775 atomic regions from SNP 111749 to 112349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:21,644 DEBUG Processing 200/664 atomic regions from SNP 59899 to 60500 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:21,647 DEBUG Processing 283/684 atomic regions from SNP 84637 to 85237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:21,765 DEBUG Processing 217/654 atomic regions from SNP 65016 to 65617 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:21,836 DEBUG Processing 374/775 atomic regions from SNP 112049 to 112649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:21,853 DEBUG Processing 284/684 atomic regions from SNP 84937 to 85537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:21,861 DEBUG Processing 201/664 atomic regions from SNP 60200 to 60801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:21,981 DEBUG Processing 218/654 atomic regions from SNP 65317 to 65918 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:22,062 DEBUG Processing 285/684 atomic regions from SNP 85237 to 85837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:22,066 DEBUG Processing 375/775 atomic regions from SNP 112349 to 112949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:22,076 DEBUG Processing 202/664 atomic regions from SNP 60501 to 61102 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:22,193 DEBUG Processing 219/654 atomic regions from SNP 65618 to 66219 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:22,279 DEBUG Processing 286/684 atomic regions from SNP 85537 to 86137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:22,291 DEBUG Processing 203/664 atomic regions from SNP 60802 to 61403 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:22,294 DEBUG Processing 376/775 atomic regions from SNP 112649 to 113249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:22,402 DEBUG Processing 220/654 atomic regions from SNP 65919 to 66520 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:22,493 DEBUG Processing 287/684 atomic regions from SNP 85837 to 86437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:22,503 DEBUG Processing 204/664 atomic regions from SNP 61103 to 61704 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:22,523 DEBUG Processing 377/775 atomic regions from SNP 112949 to 113549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:22,610 DEBUG Processing 221/654 atomic regions from SNP 66220 to 66821 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:22,706 DEBUG Processing 288/684 atomic regions from SNP 86137 to 86737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:22,715 DEBUG Processing 205/664 atomic regions from SNP 61404 to 62005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:22,750 DEBUG Processing 378/775 atomic regions from SNP 113249 to 113849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:22,821 DEBUG Processing 222/654 atomic regions from SNP 66521 to 67122 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:22,918 DEBUG Processing 289/684 atomic regions from SNP 86437 to 87037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:22,932 DEBUG Processing 206/664 atomic regions from SNP 61705 to 62306 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:22,975 DEBUG Processing 379/775 atomic regions from SNP 113549 to 114149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:23,030 DEBUG Processing 223/654 atomic regions from SNP 66822 to 67423 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:23,129 DEBUG Processing 290/684 atomic regions from SNP 86737 to 87337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:23,158 DEBUG Processing 207/664 atomic regions from SNP 62006 to 62607 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:23,206 DEBUG Processing 380/775 atomic regions from SNP 113849 to 114449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:23,243 DEBUG Processing 224/654 atomic regions from SNP 67123 to 67724 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:23,335 DEBUG Processing 291/684 atomic regions from SNP 87037 to 87637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:23,386 DEBUG Processing 208/664 atomic regions from SNP 62307 to 62908 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:23,443 DEBUG Processing 381/775 atomic regions from SNP 114149 to 114749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:23,460 DEBUG Processing 225/654 atomic regions from SNP 67424 to 68025 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:23,538 DEBUG Processing 292/684 atomic regions from SNP 87337 to 87937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:23,607 DEBUG Processing 209/664 atomic regions from SNP 62608 to 63209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:23,681 DEBUG Processing 226/654 atomic regions from SNP 67725 to 68326 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:23,684 DEBUG Processing 382/775 atomic regions from SNP 114449 to 115049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:23,746 DEBUG Processing 293/684 atomic regions from SNP 87637 to 88237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:23,818 DEBUG Processing 210/664 atomic regions from SNP 62909 to 63510 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:23,900 DEBUG Processing 227/654 atomic regions from SNP 68026 to 68627 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:23,925 DEBUG Processing 383/775 atomic regions from SNP 114749 to 115349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:23,960 DEBUG Processing 294/684 atomic regions from SNP 87937 to 88537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:24,017 DEBUG Processing 211/664 atomic regions from SNP 63210 to 63811 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:24,113 DEBUG Processing 228/654 atomic regions from SNP 68327 to 68928 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:24,169 DEBUG Processing 384/775 atomic regions from SNP 115049 to 115649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:24,172 DEBUG Processing 295/684 atomic regions from SNP 88237 to 88837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:24,225 DEBUG Processing 212/664 atomic regions from SNP 63511 to 64112 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:24,326 DEBUG Processing 229/654 atomic regions from SNP 68628 to 69229 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:24,384 DEBUG Processing 296/684 atomic regions from SNP 88537 to 89137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:24,411 DEBUG Processing 385/775 atomic regions from SNP 115349 to 115949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:24,448 DEBUG Processing 213/664 atomic regions from SNP 63812 to 64413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:24,542 DEBUG Processing 230/654 atomic regions from SNP 68929 to 69530 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:24,598 DEBUG Processing 297/684 atomic regions from SNP 88837 to 89437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:24,647 DEBUG Processing 386/775 atomic regions from SNP 115649 to 116249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:24,676 DEBUG Processing 214/664 atomic regions from SNP 64113 to 64714 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:24,755 DEBUG Processing 231/654 atomic regions from SNP 69230 to 69831 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:24,814 DEBUG Processing 298/684 atomic regions from SNP 89137 to 89737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:24,880 DEBUG Processing 387/775 atomic regions from SNP 115949 to 116549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:24,900 DEBUG Processing 215/664 atomic regions from SNP 64414 to 65015 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:24,964 DEBUG Processing 232/654 atomic regions from SNP 69531 to 70132 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:25,038 DEBUG Processing 299/684 atomic regions from SNP 89437 to 90037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:25,105 DEBUG Processing 388/775 atomic regions from SNP 116249 to 116849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:25,116 DEBUG Processing 216/664 atomic regions from SNP 64715 to 65316 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:25,172 DEBUG Processing 233/654 atomic regions from SNP 69832 to 70433 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:25,246 DEBUG Processing 300/684 atomic regions from SNP 89737 to 90337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:25,326 DEBUG Processing 217/664 atomic regions from SNP 65016 to 65617 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:25,330 DEBUG Processing 389/775 atomic regions from SNP 116549 to 117149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:25,387 DEBUG Processing 234/654 atomic regions from SNP 70133 to 70734 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:25,451 DEBUG Processing 301/684 atomic regions from SNP 90037 to 90637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:25,540 DEBUG Processing 218/664 atomic regions from SNP 65317 to 65918 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:25,555 DEBUG Processing 390/775 atomic regions from SNP 116849 to 117449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:25,605 DEBUG Processing 235/654 atomic regions from SNP 70434 to 71035 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:25,661 DEBUG Processing 302/684 atomic regions from SNP 90337 to 90937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:25,754 DEBUG Processing 219/664 atomic regions from SNP 65618 to 66219 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:25,779 DEBUG Processing 391/775 atomic regions from SNP 117149 to 117749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:25,818 DEBUG Processing 236/654 atomic regions from SNP 70735 to 71336 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:25,876 DEBUG Processing 303/684 atomic regions from SNP 90637 to 91237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:25,974 DEBUG Processing 220/664 atomic regions from SNP 65919 to 66520 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:26,009 DEBUG Processing 392/775 atomic regions from SNP 117449 to 118049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:26,022 DEBUG Processing 237/654 atomic regions from SNP 71036 to 71637 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:26,085 DEBUG Processing 304/684 atomic regions from SNP 90937 to 91537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:26,198 DEBUG Processing 221/664 atomic regions from SNP 66220 to 66821 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:26,235 DEBUG Processing 238/654 atomic regions from SNP 71337 to 71938 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:26,245 DEBUG Processing 393/775 atomic regions from SNP 117749 to 118349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:26,291 DEBUG Processing 305/684 atomic regions from SNP 91237 to 91837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:26,429 DEBUG Processing 222/664 atomic regions from SNP 66521 to 67122 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:26,460 DEBUG Processing 239/654 atomic regions from SNP 71638 to 72239 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:26,485 DEBUG Processing 394/775 atomic regions from SNP 118049 to 118649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:26,501 DEBUG Processing 306/684 atomic regions from SNP 91537 to 92137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:26,656 DEBUG Processing 223/664 atomic regions from SNP 66822 to 67423 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:26,681 DEBUG Processing 240/654 atomic regions from SNP 71939 to 72540 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:26,719 DEBUG Processing 307/684 atomic regions from SNP 91837 to 92437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:26,725 DEBUG Processing 395/775 atomic regions from SNP 118349 to 118949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:26,884 DEBUG Processing 224/664 atomic regions from SNP 67123 to 67724 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:26,897 DEBUG Processing 241/654 atomic regions from SNP 72240 to 72841 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:26,943 DEBUG Processing 308/684 atomic regions from SNP 92137 to 92737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:26,964 DEBUG Processing 396/775 atomic regions from SNP 118649 to 119249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:27,098 DEBUG Processing 225/664 atomic regions from SNP 67424 to 68025 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:27,107 DEBUG Processing 242/654 atomic regions from SNP 72541 to 73142 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:27,159 DEBUG Processing 309/684 atomic regions from SNP 92437 to 93037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:27,205 DEBUG Processing 397/775 atomic regions from SNP 118949 to 119549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:27,312 DEBUG Processing 226/664 atomic regions from SNP 67725 to 68326 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:27,314 DEBUG Processing 243/654 atomic regions from SNP 72842 to 73443 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:27,360 DEBUG Processing 310/684 atomic regions from SNP 92737 to 93337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:27,435 DEBUG Processing 398/775 atomic regions from SNP 119249 to 119849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:27,502 DEBUG Subchromosome time: 338.02630223706365, subchromosome SNPs: 316588 2025-01-31 09:44:27,503 DEBUG Estimated BADs: [0.35, 2.08, 1.04, 0.52, 1.04, 2.08, 1.04, 6.23, 1.04, 3.11, 0.35, 1.04, 3.11, 0.52, 2.08, 8.30, 1.04, 3.11, 2.08, 1.04, 4.15, 2.08] SNP counts: [44350, 9568, 9675, 11708, 18785, 4454, 15501, 1958, 17382, 14512, 35154, 21510, 10771, 22865, 35041, 566, 11681, 5454, 7536, 10118, 1797, 6202] SNP IDs counts: [44350, 9568, 9675, 11708, 18785, 4454, 15501, 1958, 17382, 14512, 35154, 21510, 10771, 22865, 35041, 566, 11681, 5454, 7536, 10118, 1797, 6202] Critical gap: 785633bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 33.58Mbp, 38.75Mbp, 44.10Mbp, 52.10Mbp, 62.74Mbp, 65.18Mbp, 74.23Mbp, 75.34Mbp, 86.05Mbp, 93.85Mbp, 118.31Mbp, 130.71Mbp, 136.41Mbp, 151.73Mbp, 171.03Mbp, 171.34Mbp, 178.30Mbp, 181.21Mbp, 185.41Mbp, 190.90Mbp, 191.85Mbp, 195.47Mbp] 2025-01-31 09:44:27,503 DEBUG chr1 time: 338.02687287097797 s 2025-01-31 09:44:27,526 DEBUG Processing 244/654 atomic regions from SNP 73143 to 73744 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:27,532 DEBUG Processing 227/664 atomic regions from SNP 68026 to 68627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:27,563 DEBUG Processing 311/684 atomic regions from SNP 93037 to 93637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:27,665 DEBUG Processing 399/775 atomic regions from SNP 119549 to 120149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:27,696 DEBUG chr1: Fitting background model for 22 segments 2025-01-31 09:44:27,741 DEBUG Processing 245/654 atomic regions from SNP 73444 to 74045 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:27,758 DEBUG Processing 228/664 atomic regions from SNP 68327 to 68928 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:27,774 DEBUG Processing 312/684 atomic regions from SNP 93337 to 93937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:27,896 DEBUG Processing 400/775 atomic regions from SNP 119849 to 120449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:27,952 DEBUG Processing 246/654 atomic regions from SNP 73745 to 74346 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:27,979 DEBUG Processing 229/664 atomic regions from SNP 68628 to 69229 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:27,989 DEBUG Processing 313/684 atomic regions from SNP 93637 to 94237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:28,133 DEBUG Processing 401/775 atomic regions from SNP 120149 to 120749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:28,174 DEBUG Processing 247/654 atomic regions from SNP 74046 to 74647 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:28,199 DEBUG Processing 230/664 atomic regions from SNP 68929 to 69530 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:28,221 DEBUG Processing 314/684 atomic regions from SNP 93937 to 94537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:28,373 DEBUG Processing 402/775 atomic regions from SNP 120449 to 121049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:28,387 DEBUG Processing 248/654 atomic regions from SNP 74347 to 74948 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:28,421 DEBUG Processing 231/664 atomic regions from SNP 69230 to 69831 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:28,433 DEBUG Processing 315/684 atomic regions from SNP 94237 to 94837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:28,612 DEBUG Processing 403/775 atomic regions from SNP 120749 to 121349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:28,621 DEBUG Processing 249/654 atomic regions from SNP 74648 to 75249 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:28,641 DEBUG Processing 232/664 atomic regions from SNP 69531 to 70132 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:28,646 DEBUG Processing 316/684 atomic regions from SNP 94537 to 95137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:28,838 DEBUG Processing 250/654 atomic regions from SNP 74949 to 75550 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:28,849 DEBUG Processing 404/775 atomic regions from SNP 121049 to 121649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:28,854 DEBUG Processing 317/684 atomic regions from SNP 94837 to 95437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:28,862 DEBUG Processing 233/664 atomic regions from SNP 69832 to 70433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:29,062 DEBUG Processing 251/654 atomic regions from SNP 75250 to 75851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:29,071 DEBUG Processing 318/684 atomic regions from SNP 95137 to 95737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:29,095 DEBUG Processing 234/664 atomic regions from SNP 70133 to 70734 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:29,097 DEBUG Processing 405/775 atomic regions from SNP 121349 to 121949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:29,285 DEBUG Processing 252/654 atomic regions from SNP 75551 to 76151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:29,289 DEBUG Processing 319/684 atomic regions from SNP 95437 to 96037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:29,330 DEBUG Processing 235/664 atomic regions from SNP 70434 to 71035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:29,346 DEBUG Processing 406/775 atomic regions from SNP 121649 to 122249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:29,497 DEBUG Processing 253/654 atomic regions from SNP 75851 to 76451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:29,514 DEBUG Processing 320/684 atomic regions from SNP 95737 to 96337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:29,563 DEBUG Processing 236/664 atomic regions from SNP 70735 to 71336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:29,595 DEBUG Processing 407/775 atomic regions from SNP 121949 to 122549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:29,707 DEBUG Processing 254/654 atomic regions from SNP 76151 to 76751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:29,731 DEBUG Processing 321/684 atomic regions from SNP 96037 to 96637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:29,788 DEBUG Processing 237/664 atomic regions from SNP 71036 to 71637 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:29,838 DEBUG Processing 408/775 atomic regions from SNP 122249 to 122849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:29,924 DEBUG Processing 255/654 atomic regions from SNP 76451 to 77051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:29,945 DEBUG Processing 322/684 atomic regions from SNP 96337 to 96937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:30,012 DEBUG Processing 238/664 atomic regions from SNP 71337 to 71938 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:30,081 DEBUG Processing 409/775 atomic regions from SNP 122549 to 123149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:30,139 DEBUG Processing 256/654 atomic regions from SNP 76751 to 77351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:30,158 DEBUG Processing 323/684 atomic regions from SNP 96637 to 97237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:30,236 DEBUG Processing 239/664 atomic regions from SNP 71638 to 72239 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:30,316 DEBUG Processing 410/775 atomic regions from SNP 122849 to 123449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:30,355 DEBUG Processing 257/654 atomic regions from SNP 77051 to 77651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:30,371 DEBUG Processing 324/684 atomic regions from SNP 96937 to 97537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:30,463 DEBUG Processing 240/664 atomic regions from SNP 71939 to 72540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:30,555 DEBUG Processing 411/775 atomic regions from SNP 123149 to 123749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:30,570 DEBUG Processing 258/654 atomic regions from SNP 77351 to 77951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:30,582 DEBUG Processing 325/684 atomic regions from SNP 97237 to 97837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:30,676 DEBUG Processing 241/664 atomic regions from SNP 72240 to 72841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:30,781 DEBUG Processing 259/654 atomic regions from SNP 77651 to 78251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:30,790 DEBUG Processing 326/684 atomic regions from SNP 97537 to 98137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:30,808 DEBUG Processing 412/775 atomic regions from SNP 123449 to 124049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:30,893 DEBUG Processing 242/664 atomic regions from SNP 72541 to 73142 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:30,991 DEBUG Processing 260/654 atomic regions from SNP 77951 to 78551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:30,998 DEBUG Processing 327/684 atomic regions from SNP 97837 to 98437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:31,062 DEBUG Processing 413/775 atomic regions from SNP 123749 to 124349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:31,114 DEBUG Processing 243/664 atomic regions from SNP 72842 to 73443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:31,201 DEBUG Processing 261/654 atomic regions from SNP 78251 to 78851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:31,204 DEBUG Processing 328/684 atomic regions from SNP 98137 to 98737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:31,298 DEBUG Processing 414/775 atomic regions from SNP 124049 to 124649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:31,334 DEBUG Processing 244/664 atomic regions from SNP 73143 to 73744 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:31,418 DEBUG Processing 329/684 atomic regions from SNP 98437 to 99037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:31,420 DEBUG Processing 262/654 atomic regions from SNP 78551 to 79151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:31,535 DEBUG Processing 415/775 atomic regions from SNP 124349 to 124949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:31,555 DEBUG Processing 245/664 atomic regions from SNP 73444 to 74045 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:31,628 DEBUG Processing 330/684 atomic regions from SNP 98737 to 99337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:31,633 DEBUG Processing 263/654 atomic regions from SNP 78851 to 79451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:31,765 DEBUG Processing 416/775 atomic regions from SNP 124649 to 125249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:31,773 DEBUG Processing 246/664 atomic regions from SNP 73745 to 74346 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:31,834 DEBUG Processing 331/684 atomic regions from SNP 99037 to 99637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:31,841 DEBUG Processing 264/654 atomic regions from SNP 79151 to 79751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:31,995 DEBUG Processing 247/664 atomic regions from SNP 74046 to 74647 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:32,004 DEBUG Processing 417/775 atomic regions from SNP 124949 to 125549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:32,044 DEBUG Processing 332/684 atomic regions from SNP 99337 to 99937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:32,054 DEBUG Processing 265/654 atomic regions from SNP 79451 to 80051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:32,214 DEBUG Processing 248/664 atomic regions from SNP 74347 to 74948 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:32,240 DEBUG Processing 418/775 atomic regions from SNP 125249 to 125849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:32,256 DEBUG Processing 333/684 atomic regions from SNP 99637 to 100237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:32,270 DEBUG Processing 266/654 atomic regions from SNP 79751 to 80351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:32,432 DEBUG Processing 249/664 atomic regions from SNP 74648 to 75249 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:32,464 DEBUG Processing 334/684 atomic regions from SNP 99937 to 100537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:32,476 DEBUG Processing 419/775 atomic regions from SNP 125549 to 126149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:32,483 DEBUG Processing 267/654 atomic regions from SNP 80051 to 80651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:32,655 DEBUG Processing 250/664 atomic regions from SNP 74949 to 75550 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:32,673 DEBUG Processing 335/684 atomic regions from SNP 100237 to 100837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:32,698 DEBUG Processing 268/654 atomic regions from SNP 80351 to 80951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:32,710 DEBUG Processing 420/775 atomic regions from SNP 125849 to 126449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:32,889 DEBUG Processing 336/684 atomic regions from SNP 100537 to 101137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:32,891 DEBUG Processing 251/664 atomic regions from SNP 75250 to 75851 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:32,917 DEBUG Processing 269/654 atomic regions from SNP 80651 to 81251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:32,952 DEBUG Processing 421/775 atomic regions from SNP 126149 to 126749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:33,101 DEBUG Processing 337/684 atomic regions from SNP 100837 to 101437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:33,122 DEBUG Processing 252/664 atomic regions from SNP 75551 to 76152 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:33,135 DEBUG Processing 270/654 atomic regions from SNP 80951 to 81551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:33,198 DEBUG Processing 422/775 atomic regions from SNP 126449 to 127049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:33,314 DEBUG Processing 338/684 atomic regions from SNP 101137 to 101737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:33,349 DEBUG Processing 253/664 atomic regions from SNP 75852 to 76453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:33,351 DEBUG Processing 271/654 atomic regions from SNP 81251 to 81851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:33,444 DEBUG Processing 423/775 atomic regions from SNP 126749 to 127349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:33,526 DEBUG Processing 339/684 atomic regions from SNP 101437 to 102037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:33,565 DEBUG Processing 272/654 atomic regions from SNP 81551 to 82151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:33,569 DEBUG Processing 254/664 atomic regions from SNP 76153 to 76754 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:33,684 DEBUG Processing 424/775 atomic regions from SNP 127049 to 127649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:33,740 DEBUG Processing 340/684 atomic regions from SNP 101737 to 102337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:33,785 DEBUG Processing 273/654 atomic regions from SNP 81851 to 82451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:33,792 DEBUG Processing 255/664 atomic regions from SNP 76454 to 77055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:33,917 DEBUG Processing 425/775 atomic regions from SNP 127349 to 127949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:33,947 DEBUG Processing 341/684 atomic regions from SNP 102037 to 102637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:34,001 DEBUG Processing 274/654 atomic regions from SNP 82151 to 82751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:34,016 DEBUG Processing 256/664 atomic regions from SNP 76755 to 77356 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:34,150 DEBUG Processing 342/684 atomic regions from SNP 102337 to 102937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:34,162 DEBUG Processing 426/775 atomic regions from SNP 127649 to 128249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:34,207 DEBUG Processing 275/654 atomic regions from SNP 82451 to 83051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:34,239 DEBUG Processing 257/664 atomic regions from SNP 77056 to 77657 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:34,364 DEBUG Processing 343/684 atomic regions from SNP 102637 to 103237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:34,399 DEBUG Processing 427/775 atomic regions from SNP 127949 to 128549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:34,419 DEBUG Processing 276/654 atomic regions from SNP 82751 to 83351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:34,452 DEBUG Processing 258/664 atomic regions from SNP 77357 to 77958 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:34,577 DEBUG Processing 344/684 atomic regions from SNP 102937 to 103537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:34,639 DEBUG Processing 277/654 atomic regions from SNP 83051 to 83651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:34,644 DEBUG Processing 428/775 atomic regions from SNP 128249 to 128849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:34,674 DEBUG Processing 259/664 atomic regions from SNP 77658 to 78259 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:34,674 DEBUG Segmenting atomic regions: 2025-01-31 09:44:34,756 DEBUG Processing 1/591 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:34,783 DEBUG Processing 345/684 atomic regions from SNP 103237 to 103837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:34,857 DEBUG Processing 278/654 atomic regions from SNP 83351 to 83951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:34,896 DEBUG Processing 429/775 atomic regions from SNP 128549 to 129149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:34,906 DEBUG Processing 260/664 atomic regions from SNP 77959 to 78560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:34,949 DEBUG Processing 2/591 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:34,989 DEBUG Processing 346/684 atomic regions from SNP 103537 to 104137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:35,063 DEBUG Processing 279/654 atomic regions from SNP 83651 to 84251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:35,140 DEBUG Processing 261/664 atomic regions from SNP 78260 to 78861 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:35,143 DEBUG Processing 430/775 atomic regions from SNP 128849 to 129449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:35,147 DEBUG Processing 3/591 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:35,202 DEBUG Processing 347/684 atomic regions from SNP 103837 to 104437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:35,269 DEBUG Processing 280/654 atomic regions from SNP 83951 to 84551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:35,334 DEBUG Processing 4/591 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:35,367 DEBUG Processing 262/664 atomic regions from SNP 78561 to 79162 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:35,385 DEBUG Processing 431/775 atomic regions from SNP 129149 to 129749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:35,412 DEBUG Processing 348/684 atomic regions from SNP 104137 to 104737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:35,491 DEBUG Processing 281/654 atomic regions from SNP 84251 to 84851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:35,523 DEBUG Processing 5/591 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:35,586 DEBUG Processing 263/664 atomic regions from SNP 78862 to 79463 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:35,613 DEBUG Processing 349/684 atomic regions from SNP 104437 to 105037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:35,637 DEBUG Processing 432/775 atomic regions from SNP 129449 to 130049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:35,711 DEBUG Processing 282/654 atomic regions from SNP 84551 to 85151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:35,727 DEBUG Processing 6/591 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:35,806 DEBUG Processing 264/664 atomic regions from SNP 79163 to 79764 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:35,816 DEBUG Processing 350/684 atomic regions from SNP 104737 to 105337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:35,896 DEBUG Processing 433/775 atomic regions from SNP 129749 to 130349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:35,927 DEBUG Processing 283/654 atomic regions from SNP 84851 to 85451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:35,928 DEBUG Processing 7/591 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:36,027 DEBUG Processing 265/664 atomic regions from SNP 79464 to 80065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:36,031 DEBUG Processing 351/684 atomic regions from SNP 105037 to 105637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:36,120 DEBUG Processing 8/591 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:36,137 DEBUG Processing 284/654 atomic regions from SNP 85151 to 85751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:36,140 DEBUG Processing 434/775 atomic regions from SNP 130049 to 130649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:36,243 DEBUG Processing 352/684 atomic regions from SNP 105337 to 105937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:36,245 DEBUG Processing 266/664 atomic regions from SNP 79765 to 80366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:36,318 DEBUG Processing 9/591 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:36,355 DEBUG Processing 285/654 atomic regions from SNP 85451 to 86051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:36,381 DEBUG Processing 435/775 atomic regions from SNP 130349 to 130949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:36,452 DEBUG Processing 353/684 atomic regions from SNP 105637 to 106237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:36,464 DEBUG Processing 267/664 atomic regions from SNP 80066 to 80667 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:36,518 DEBUG Processing 10/591 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:36,604 DEBUG Processing 286/654 atomic regions from SNP 85751 to 86351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:36,624 DEBUG Processing 436/775 atomic regions from SNP 130649 to 131249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:36,665 DEBUG Processing 354/684 atomic regions from SNP 105937 to 106537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:36,687 DEBUG Processing 268/664 atomic regions from SNP 80367 to 80968 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:36,709 DEBUG Processing 11/591 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:36,855 DEBUG Processing 287/654 atomic regions from SNP 86051 to 86651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:36,872 DEBUG Processing 437/775 atomic regions from SNP 130949 to 131549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:36,887 DEBUG Processing 355/684 atomic regions from SNP 106237 to 106837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:36,910 DEBUG Processing 12/591 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:36,923 DEBUG Processing 269/664 atomic regions from SNP 80668 to 81269 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:37,072 DEBUG Processing 288/654 atomic regions from SNP 86351 to 86951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:37,099 DEBUG Processing 356/684 atomic regions from SNP 106537 to 107137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:37,107 DEBUG Processing 438/775 atomic regions from SNP 131249 to 131849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:37,110 DEBUG Processing 13/591 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:37,155 DEBUG Processing 270/664 atomic regions from SNP 80969 to 81570 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:37,279 DEBUG Processing 289/654 atomic regions from SNP 86651 to 87251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:37,306 DEBUG Processing 14/591 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:37,308 DEBUG Processing 357/684 atomic regions from SNP 106837 to 107437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:37,337 DEBUG Processing 439/775 atomic regions from SNP 131549 to 132149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:37,380 DEBUG Processing 271/664 atomic regions from SNP 81270 to 81871 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:37,486 DEBUG Processing 290/654 atomic regions from SNP 86951 to 87551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:37,497 DEBUG Processing 15/591 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:37,513 DEBUG Processing 358/684 atomic regions from SNP 107137 to 107737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:37,580 DEBUG Processing 440/775 atomic regions from SNP 131849 to 132449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:37,598 DEBUG Processing 272/664 atomic regions from SNP 81571 to 82172 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:37,690 DEBUG Processing 16/591 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:37,695 DEBUG Processing 291/654 atomic regions from SNP 87251 to 87851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:37,718 DEBUG Processing 359/684 atomic regions from SNP 107437 to 108037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:37,818 DEBUG Processing 273/664 atomic regions from SNP 81872 to 82473 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:37,844 DEBUG Processing 441/775 atomic regions from SNP 132149 to 132749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:37,883 DEBUG Processing 17/591 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:37,908 DEBUG Processing 292/654 atomic regions from SNP 87551 to 88151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:37,922 DEBUG Processing 360/684 atomic regions from SNP 107737 to 108337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:38,042 DEBUG Processing 274/664 atomic regions from SNP 82173 to 82774 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:38,079 DEBUG Processing 18/591 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:38,093 DEBUG Processing 442/775 atomic regions from SNP 132449 to 133049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:38,122 DEBUG Processing 293/654 atomic regions from SNP 87851 to 88451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:38,131 DEBUG Processing 361/684 atomic regions from SNP 108037 to 108637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:38,269 DEBUG Processing 275/664 atomic regions from SNP 82474 to 83075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:38,277 DEBUG Processing 19/591 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:38,340 DEBUG Processing 294/654 atomic regions from SNP 88151 to 88751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:38,343 DEBUG Processing 443/775 atomic regions from SNP 132749 to 133349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:38,346 DEBUG Processing 362/684 atomic regions from SNP 108337 to 108937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:38,467 DEBUG Processing 20/591 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:38,480 DEBUG Processing 276/664 atomic regions from SNP 82775 to 83376 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:38,554 DEBUG Processing 295/654 atomic regions from SNP 88451 to 89051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:38,557 DEBUG Processing 363/684 atomic regions from SNP 108637 to 109237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:38,587 DEBUG Processing 444/775 atomic regions from SNP 133049 to 133649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:38,658 DEBUG Processing 21/591 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:38,689 DEBUG Processing 277/664 atomic regions from SNP 83076 to 83677 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:38,760 DEBUG Processing 364/684 atomic regions from SNP 108937 to 109537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:38,761 DEBUG Processing 296/654 atomic regions from SNP 88751 to 89351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:38,827 DEBUG Processing 445/775 atomic regions from SNP 133349 to 133949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:38,856 DEBUG Processing 22/591 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:38,914 DEBUG Processing 278/664 atomic regions from SNP 83377 to 83978 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:38,968 DEBUG Processing 365/684 atomic regions from SNP 109237 to 109837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:38,973 DEBUG Processing 297/654 atomic regions from SNP 89051 to 89651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:39,041 DEBUG Processing 23/591 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:39,055 DEBUG Processing 446/775 atomic regions from SNP 133649 to 134249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:39,141 DEBUG Processing 279/664 atomic regions from SNP 83678 to 84279 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:39,186 DEBUG Processing 366/684 atomic regions from SNP 109537 to 110137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:39,194 DEBUG Processing 298/654 atomic regions from SNP 89351 to 89951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:39,233 DEBUG Processing 24/591 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:39,296 DEBUG Processing 447/775 atomic regions from SNP 133949 to 134549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:39,363 DEBUG Processing 280/664 atomic regions from SNP 83979 to 84580 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:39,405 DEBUG Processing 367/684 atomic regions from SNP 109837 to 110437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:39,421 DEBUG Processing 299/654 atomic regions from SNP 89651 to 90251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:39,442 DEBUG Processing 25/591 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:39,545 DEBUG Processing 448/775 atomic regions from SNP 134249 to 134849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:39,584 DEBUG Processing 281/664 atomic regions from SNP 84280 to 84881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:39,615 DEBUG Processing 368/684 atomic regions from SNP 110137 to 110737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:39,638 DEBUG Processing 300/654 atomic regions from SNP 89951 to 90551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:39,642 DEBUG Processing 26/591 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:39,785 DEBUG Processing 449/775 atomic regions from SNP 134549 to 135149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:39,811 DEBUG Processing 282/664 atomic regions from SNP 84581 to 85181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:39,824 DEBUG Processing 369/684 atomic regions from SNP 110437 to 111037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:39,835 DEBUG Processing 27/591 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:39,851 DEBUG Processing 301/654 atomic regions from SNP 90251 to 90851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:40,032 DEBUG Processing 450/775 atomic regions from SNP 134849 to 135449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:40,042 DEBUG Processing 283/664 atomic regions from SNP 84881 to 85481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:40,043 DEBUG Processing 28/591 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:40,049 DEBUG Processing 370/684 atomic regions from SNP 110737 to 111337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:40,073 DEBUG Processing 302/654 atomic regions from SNP 90551 to 91151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:40,250 DEBUG Processing 29/591 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:40,270 DEBUG Processing 371/684 atomic regions from SNP 111037 to 111637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:40,275 DEBUG Processing 451/775 atomic regions from SNP 135149 to 135749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:40,290 DEBUG Processing 284/664 atomic regions from SNP 85181 to 85781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:40,299 DEBUG Processing 303/654 atomic regions from SNP 90851 to 91451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:40,443 DEBUG Processing 30/591 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:40,483 DEBUG Processing 372/684 atomic regions from SNP 111337 to 111937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:40,510 DEBUG Processing 452/775 atomic regions from SNP 135449 to 136049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:40,523 DEBUG Processing 304/654 atomic regions from SNP 91151 to 91751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:40,537 DEBUG Processing 285/664 atomic regions from SNP 85481 to 86081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:40,636 DEBUG Processing 31/591 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:40,690 DEBUG Processing 373/684 atomic regions from SNP 111637 to 112237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:40,734 DEBUG Processing 305/654 atomic regions from SNP 91451 to 92051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:40,739 DEBUG Processing 453/775 atomic regions from SNP 135749 to 136349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:40,749 DEBUG Processing 286/664 atomic regions from SNP 85781 to 86381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:40,840 DEBUG Processing 32/591 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:40,904 DEBUG Processing 374/684 atomic regions from SNP 111937 to 112537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:40,947 DEBUG Processing 306/654 atomic regions from SNP 91751 to 92351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:40,958 DEBUG Processing 287/664 atomic regions from SNP 86081 to 86681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:40,966 DEBUG Processing 454/775 atomic regions from SNP 136049 to 136649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:41,034 DEBUG Processing 33/591 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:41,121 DEBUG Processing 375/684 atomic regions from SNP 112237 to 112837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:41,168 DEBUG Processing 307/654 atomic regions from SNP 92051 to 92651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:41,181 DEBUG Processing 288/664 atomic regions from SNP 86381 to 86981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:41,203 DEBUG Processing 455/775 atomic regions from SNP 136349 to 136949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:41,227 DEBUG Processing 34/591 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:41,329 DEBUG Processing 376/684 atomic regions from SNP 112537 to 113137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:41,386 DEBUG Processing 308/654 atomic regions from SNP 92351 to 92951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:41,407 DEBUG Processing 289/664 atomic regions from SNP 86681 to 87281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:41,427 DEBUG Processing 35/591 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:41,443 DEBUG Processing 456/775 atomic regions from SNP 136649 to 137249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:41,534 DEBUG Processing 377/684 atomic regions from SNP 112837 to 113437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:41,601 DEBUG Processing 309/654 atomic regions from SNP 92651 to 93251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:41,628 DEBUG Processing 36/591 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:41,632 DEBUG Processing 290/664 atomic regions from SNP 86981 to 87581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:41,686 DEBUG Processing 457/775 atomic regions from SNP 136949 to 137549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:41,748 DEBUG Processing 378/684 atomic regions from SNP 113137 to 113737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:41,818 DEBUG Processing 310/654 atomic regions from SNP 92951 to 93551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:41,825 DEBUG Processing 37/591 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:41,856 DEBUG Processing 291/664 atomic regions from SNP 87281 to 87881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:41,942 DEBUG Processing 458/775 atomic regions from SNP 137249 to 137849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:41,961 DEBUG Processing 379/684 atomic regions from SNP 113437 to 114037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:42,020 DEBUG Processing 38/591 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:42,031 DEBUG Processing 311/654 atomic regions from SNP 93251 to 93851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:42,072 DEBUG Processing 292/664 atomic regions from SNP 87581 to 88181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:42,172 DEBUG Processing 380/684 atomic regions from SNP 113737 to 114337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:42,180 DEBUG Processing 459/775 atomic regions from SNP 137549 to 138149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:42,221 DEBUG Processing 39/591 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:42,248 DEBUG Processing 312/654 atomic regions from SNP 93551 to 94151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:42,296 DEBUG Processing 293/664 atomic regions from SNP 87881 to 88481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:42,393 DEBUG Processing 381/684 atomic regions from SNP 114037 to 114637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:42,419 DEBUG Processing 460/775 atomic regions from SNP 137849 to 138449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:42,430 DEBUG Processing 40/591 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:42,473 DEBUG Processing 313/654 atomic regions from SNP 93851 to 94451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:42,515 DEBUG Processing 294/664 atomic regions from SNP 88181 to 88781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:42,602 DEBUG Processing 382/684 atomic regions from SNP 114337 to 114937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:42,629 DEBUG Processing 41/591 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:42,656 DEBUG Processing 461/775 atomic regions from SNP 138149 to 138749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:42,691 DEBUG Processing 314/654 atomic regions from SNP 94151 to 94751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:42,733 DEBUG Processing 295/664 atomic regions from SNP 88481 to 89081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:42,809 DEBUG Processing 383/684 atomic regions from SNP 114637 to 115237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:42,822 DEBUG Processing 42/591 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:42,888 DEBUG Processing 462/775 atomic regions from SNP 138449 to 139049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:42,903 DEBUG Processing 315/654 atomic regions from SNP 94451 to 95051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:42,953 DEBUG Processing 296/664 atomic regions from SNP 88781 to 89381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:43,017 DEBUG Processing 384/684 atomic regions from SNP 114937 to 115537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:43,017 DEBUG Processing 43/591 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:43,111 DEBUG Processing 316/654 atomic regions from SNP 94751 to 95351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:43,119 DEBUG Processing 463/775 atomic regions from SNP 138749 to 139349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:43,176 DEBUG Processing 297/664 atomic regions from SNP 89081 to 89681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:43,213 DEBUG Processing 44/591 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:43,228 DEBUG Processing 385/684 atomic regions from SNP 115237 to 115837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:43,322 DEBUG Processing 317/654 atomic regions from SNP 95051 to 95651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:43,351 DEBUG Processing 464/775 atomic regions from SNP 139049 to 139649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:43,398 DEBUG Processing 298/664 atomic regions from SNP 89381 to 89981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:43,407 DEBUG Processing 45/591 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:43,438 DEBUG Processing 386/684 atomic regions from SNP 115537 to 116137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:43,540 DEBUG Processing 318/654 atomic regions from SNP 95351 to 95951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:43,587 DEBUG Processing 465/775 atomic regions from SNP 139349 to 139949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:43,602 DEBUG Processing 46/591 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:43,618 DEBUG Processing 299/664 atomic regions from SNP 89681 to 90281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:43,657 DEBUG Processing 387/684 atomic regions from SNP 115837 to 116437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:43,755 DEBUG Processing 319/654 atomic regions from SNP 95651 to 96251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:43,806 DEBUG Processing 47/591 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:43,829 DEBUG Processing 466/775 atomic regions from SNP 139649 to 140249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:43,844 DEBUG Processing 300/664 atomic regions from SNP 89981 to 90581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:43,874 DEBUG Processing 388/684 atomic regions from SNP 116137 to 116737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:43,970 DEBUG Processing 320/654 atomic regions from SNP 95951 to 96551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:44,010 DEBUG Processing 48/591 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:44,073 DEBUG Processing 467/775 atomic regions from SNP 139949 to 140549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:44,078 DEBUG Processing 301/664 atomic regions from SNP 90281 to 90881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:44,102 DEBUG Processing 389/684 atomic regions from SNP 116437 to 117037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:44,194 DEBUG Processing 321/654 atomic regions from SNP 96251 to 96851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:44,215 DEBUG Processing 49/591 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:44,304 DEBUG Processing 302/664 atomic regions from SNP 90581 to 91181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:44,317 DEBUG Processing 390/684 atomic regions from SNP 116737 to 117337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:44,317 DEBUG Processing 468/775 atomic regions from SNP 140249 to 140849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:44,422 DEBUG Processing 322/654 atomic regions from SNP 96551 to 97151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:44,424 DEBUG Processing 50/591 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:44,519 DEBUG Processing 303/664 atomic regions from SNP 90881 to 91481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:44,535 DEBUG Processing 391/684 atomic regions from SNP 117037 to 117637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:44,549 DEBUG Processing 469/775 atomic regions from SNP 140549 to 141149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:44,629 DEBUG Processing 51/591 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:44,645 DEBUG Processing 323/654 atomic regions from SNP 96851 to 97451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:44,734 DEBUG Processing 304/664 atomic regions from SNP 91181 to 91781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:44,756 DEBUG Processing 392/684 atomic regions from SNP 117337 to 117937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:44,787 DEBUG Processing 470/775 atomic regions from SNP 140849 to 141449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:44,830 DEBUG Processing 52/591 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:44,863 DEBUG Processing 324/654 atomic regions from SNP 97151 to 97751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:44,957 DEBUG Processing 305/664 atomic regions from SNP 91481 to 92081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:44,973 DEBUG Processing 393/684 atomic regions from SNP 117637 to 118237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:45,022 DEBUG Processing 471/775 atomic regions from SNP 141149 to 141749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:45,041 DEBUG Processing 53/591 atomic regions from SNP 15652 to 16252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:45,085 DEBUG Processing 325/654 atomic regions from SNP 97451 to 98051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:45,189 DEBUG Processing 306/664 atomic regions from SNP 91781 to 92381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:45,200 DEBUG Processing 394/684 atomic regions from SNP 117937 to 118537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:45,259 DEBUG Processing 54/591 atomic regions from SNP 15952 to 16552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:45,267 DEBUG Processing 472/775 atomic regions from SNP 141449 to 142049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:45,328 DEBUG Processing 326/654 atomic regions from SNP 97751 to 98351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:45,411 DEBUG Processing 395/684 atomic regions from SNP 118237 to 118837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:45,412 DEBUG Processing 307/664 atomic regions from SNP 92081 to 92681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:45,457 DEBUG Processing 55/591 atomic regions from SNP 16252 to 16852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:45,504 DEBUG Processing 473/775 atomic regions from SNP 141749 to 142349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:45,558 DEBUG Processing 327/654 atomic regions from SNP 98051 to 98651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:45,629 DEBUG Processing 396/684 atomic regions from SNP 118537 to 119137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:45,633 DEBUG Processing 308/664 atomic regions from SNP 92381 to 92981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:45,653 DEBUG Processing 56/591 atomic regions from SNP 16552 to 17152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:45,740 DEBUG Processing 474/775 atomic regions from SNP 142049 to 142649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:45,776 DEBUG Processing 328/654 atomic regions from SNP 98351 to 98951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:45,852 DEBUG Processing 397/684 atomic regions from SNP 118837 to 119437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:45,854 DEBUG Processing 309/664 atomic regions from SNP 92681 to 93281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:45,860 DEBUG Processing 57/591 atomic regions from SNP 16852 to 17452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:45,976 DEBUG Processing 475/775 atomic regions from SNP 142349 to 142949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:45,994 DEBUG Processing 329/654 atomic regions from SNP 98651 to 99251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:46,069 DEBUG Processing 58/591 atomic regions from SNP 17152 to 17752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:46,076 DEBUG Processing 310/664 atomic regions from SNP 92981 to 93581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:46,087 DEBUG Processing 398/684 atomic regions from SNP 119137 to 119737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:46,209 DEBUG Processing 476/775 atomic regions from SNP 142649 to 143249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:46,216 DEBUG Processing 330/654 atomic regions from SNP 98951 to 99551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:46,273 DEBUG Processing 59/591 atomic regions from SNP 17452 to 18052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:46,298 DEBUG Processing 311/664 atomic regions from SNP 93281 to 93881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:46,303 DEBUG Processing 399/684 atomic regions from SNP 119437 to 120037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:46,441 DEBUG Processing 477/775 atomic regions from SNP 142949 to 143549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:46,443 DEBUG Processing 331/654 atomic regions from SNP 99251 to 99851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:46,484 DEBUG Processing 60/591 atomic regions from SNP 17752 to 18352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:46,520 DEBUG Processing 312/664 atomic regions from SNP 93581 to 94181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:46,521 DEBUG Processing 400/684 atomic regions from SNP 119737 to 120337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:46,660 DEBUG Processing 332/654 atomic regions from SNP 99551 to 100151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:46,667 DEBUG Processing 478/775 atomic regions from SNP 143249 to 143849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:46,693 DEBUG Processing 61/591 atomic regions from SNP 18052 to 18652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:46,734 DEBUG Processing 313/664 atomic regions from SNP 93881 to 94481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:46,755 DEBUG Processing 401/684 atomic regions from SNP 120037 to 120637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:46,872 DEBUG Processing 333/654 atomic regions from SNP 99851 to 100451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:46,892 DEBUG Processing 62/591 atomic regions from SNP 18352 to 18952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:46,898 DEBUG Processing 479/775 atomic regions from SNP 143549 to 144149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:46,951 DEBUG Processing 314/664 atomic regions from SNP 94181 to 94781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:46,984 DEBUG Processing 402/684 atomic regions from SNP 120337 to 120937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:47,097 DEBUG Processing 334/654 atomic regions from SNP 100151 to 100751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:47,097 DEBUG Processing 63/591 atomic regions from SNP 18652 to 19252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:47,134 DEBUG Processing 480/775 atomic regions from SNP 143849 to 144449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:47,174 DEBUG Processing 315/664 atomic regions from SNP 94481 to 95081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:47,205 DEBUG Processing 403/684 atomic regions from SNP 120637 to 121237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:47,301 DEBUG Processing 64/591 atomic regions from SNP 18952 to 19552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:47,320 DEBUG Processing 335/654 atomic regions from SNP 100451 to 101051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:47,375 DEBUG Processing 481/775 atomic regions from SNP 144149 to 144749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:47,395 DEBUG Processing 316/664 atomic regions from SNP 94781 to 95381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:47,417 DEBUG Processing 404/684 atomic regions from SNP 120937 to 121537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:47,494 DEBUG Processing 65/591 atomic regions from SNP 19252 to 19852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:47,531 DEBUG Processing 336/654 atomic regions from SNP 100751 to 101351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:47,609 DEBUG Processing 482/775 atomic regions from SNP 144449 to 145049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:47,613 DEBUG Processing 317/664 atomic regions from SNP 95081 to 95681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:47,628 DEBUG Processing 405/684 atomic regions from SNP 121237 to 121837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:47,690 DEBUG Processing 66/591 atomic regions from SNP 19552 to 20152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:47,739 DEBUG Processing 337/654 atomic regions from SNP 101051 to 101651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:47,839 DEBUG Processing 318/664 atomic regions from SNP 95381 to 95981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:47,847 DEBUG Processing 406/684 atomic regions from SNP 121537 to 122137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:47,853 DEBUG Processing 483/775 atomic regions from SNP 144749 to 145349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:47,900 DEBUG Processing 67/591 atomic regions from SNP 19852 to 20452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:47,955 DEBUG Processing 338/654 atomic regions from SNP 101351 to 101951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:48,056 DEBUG Processing 407/684 atomic regions from SNP 121837 to 122437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:48,060 DEBUG Processing 319/664 atomic regions from SNP 95681 to 96281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:48,090 DEBUG Processing 484/775 atomic regions from SNP 145049 to 145649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:48,110 DEBUG Processing 68/591 atomic regions from SNP 20152 to 20752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:48,182 DEBUG Processing 339/654 atomic regions from SNP 101651 to 102251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:48,269 DEBUG Processing 408/684 atomic regions from SNP 122137 to 122737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:48,281 DEBUG Processing 320/664 atomic regions from SNP 95981 to 96581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:48,330 DEBUG Processing 485/775 atomic regions from SNP 145349 to 145949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:48,331 DEBUG Processing 69/591 atomic regions from SNP 20452 to 21052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:48,417 DEBUG Processing 340/654 atomic regions from SNP 101951 to 102551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:48,507 DEBUG Processing 321/664 atomic regions from SNP 96281 to 96881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:48,522 DEBUG Processing 409/684 atomic regions from SNP 122437 to 123037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:48,536 DEBUG Processing 70/591 atomic regions from SNP 20752 to 21352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:48,566 DEBUG Processing 486/775 atomic regions from SNP 145649 to 146249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:48,628 DEBUG Processing 341/654 atomic regions from SNP 102251 to 102851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:48,733 DEBUG Processing 322/664 atomic regions from SNP 96581 to 97181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:48,765 DEBUG Processing 71/591 atomic regions from SNP 21052 to 21652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:48,774 DEBUG Processing 410/684 atomic regions from SNP 122737 to 123337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:48,808 DEBUG Processing 487/775 atomic regions from SNP 145949 to 146549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:48,842 DEBUG Processing 342/654 atomic regions from SNP 102551 to 103151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:48,955 DEBUG Processing 323/664 atomic regions from SNP 96881 to 97481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:48,977 DEBUG Processing 72/591 atomic regions from SNP 21352 to 21952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:49,025 DEBUG Processing 411/684 atomic regions from SNP 123037 to 123637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:49,056 DEBUG Processing 488/775 atomic regions from SNP 146249 to 146849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:49,067 DEBUG Processing 343/654 atomic regions from SNP 102851 to 103451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:49,172 DEBUG Processing 324/664 atomic regions from SNP 97181 to 97781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:49,175 DEBUG Processing 73/591 atomic regions from SNP 21652 to 22252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:49,271 DEBUG Processing 412/684 atomic regions from SNP 123337 to 123937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:49,288 DEBUG Processing 344/654 atomic regions from SNP 103151 to 103751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:49,297 DEBUG Processing 489/775 atomic regions from SNP 146549 to 147149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:49,369 DEBUG Processing 74/591 atomic regions from SNP 21952 to 22552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:49,398 DEBUG Processing 325/664 atomic regions from SNP 97481 to 98081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:49,498 DEBUG Processing 345/654 atomic regions from SNP 103451 to 104051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:49,517 DEBUG Processing 413/684 atomic regions from SNP 123637 to 124237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:49,536 DEBUG Processing 490/775 atomic regions from SNP 146849 to 147449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:49,573 DEBUG Processing 75/591 atomic regions from SNP 22252 to 22852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:49,630 DEBUG Processing 326/664 atomic regions from SNP 97781 to 98381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:49,706 DEBUG Processing 346/654 atomic regions from SNP 103751 to 104351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:49,758 DEBUG Processing 414/684 atomic regions from SNP 123937 to 124537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:49,773 DEBUG Processing 491/775 atomic regions from SNP 147149 to 147749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:49,797 DEBUG Processing 76/591 atomic regions from SNP 22552 to 23152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:49,862 DEBUG Processing 327/664 atomic regions from SNP 98081 to 98681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:49,920 DEBUG Processing 347/654 atomic regions from SNP 104051 to 104651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:49,991 DEBUG Processing 77/591 atomic regions from SNP 22852 to 23452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:50,003 DEBUG Processing 415/684 atomic regions from SNP 124237 to 124837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:50,009 DEBUG Processing 492/775 atomic regions from SNP 147449 to 148049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:50,087 DEBUG Processing 328/664 atomic regions from SNP 98381 to 98981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:50,138 DEBUG Processing 348/654 atomic regions from SNP 104351 to 104951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:50,215 DEBUG Processing 78/591 atomic regions from SNP 23152 to 23752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:50,249 DEBUG Processing 493/775 atomic regions from SNP 147749 to 148349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:50,254 DEBUG Processing 416/684 atomic regions from SNP 124537 to 125137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:50,310 DEBUG Processing 329/664 atomic regions from SNP 98681 to 99281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:50,353 DEBUG Processing 349/654 atomic regions from SNP 104651 to 105251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:50,435 DEBUG Processing 79/591 atomic regions from SNP 23452 to 24052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:50,492 DEBUG Processing 494/775 atomic regions from SNP 148049 to 148649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:50,508 DEBUG Processing 417/684 atomic regions from SNP 124837 to 125437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:50,543 DEBUG Processing 330/664 atomic regions from SNP 98981 to 99581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:50,563 DEBUG Processing 350/654 atomic regions from SNP 104951 to 105551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:50,627 DEBUG Processing 80/591 atomic regions from SNP 23752 to 24352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:50,725 DEBUG Processing 495/775 atomic regions from SNP 148349 to 148949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:50,759 DEBUG Processing 418/684 atomic regions from SNP 125137 to 125737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:50,776 DEBUG Processing 351/654 atomic regions from SNP 105251 to 105851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:50,789 DEBUG Processing 331/664 atomic regions from SNP 99281 to 99881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:50,816 DEBUG Processing 81/591 atomic regions from SNP 24052 to 24652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:50,955 DEBUG Processing 496/775 atomic regions from SNP 148649 to 149249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:50,999 DEBUG Processing 352/654 atomic regions from SNP 105551 to 106151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:51,017 DEBUG Processing 419/684 atomic regions from SNP 125437 to 126037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:51,019 DEBUG Processing 82/591 atomic regions from SNP 24352 to 24952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:51,034 DEBUG Processing 332/664 atomic regions from SNP 99581 to 100181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:51,186 DEBUG Processing 497/775 atomic regions from SNP 148949 to 149549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:51,226 DEBUG Processing 353/654 atomic regions from SNP 105851 to 106451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:51,229 DEBUG Processing 83/591 atomic regions from SNP 24652 to 25252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:51,272 DEBUG Processing 333/664 atomic regions from SNP 99881 to 100481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:51,274 DEBUG Processing 420/684 atomic regions from SNP 125737 to 126337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:51,415 DEBUG Processing 498/775 atomic regions from SNP 149249 to 149849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:51,436 DEBUG Processing 84/591 atomic regions from SNP 24952 to 25552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:51,452 DEBUG Processing 354/654 atomic regions from SNP 106151 to 106751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:51,528 DEBUG Processing 334/664 atomic regions from SNP 100181 to 100781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:51,530 DEBUG Processing 421/684 atomic regions from SNP 126037 to 126637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:51,629 DEBUG Processing 85/591 atomic regions from SNP 25252 to 25852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:51,645 DEBUG Processing 499/775 atomic regions from SNP 149549 to 150149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:51,666 DEBUG Processing 355/654 atomic regions from SNP 106451 to 107051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:51,770 DEBUG Processing 422/684 atomic regions from SNP 126337 to 126937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:51,788 DEBUG Processing 335/664 atomic regions from SNP 100481 to 101081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:51,826 DEBUG Processing 86/591 atomic regions from SNP 25552 to 26152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:51,874 DEBUG Processing 500/775 atomic regions from SNP 149849 to 150449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:51,880 DEBUG Processing 356/654 atomic regions from SNP 106751 to 107351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:51,982 DEBUG Processing 423/684 atomic regions from SNP 126637 to 127237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:52,028 DEBUG Processing 87/591 atomic regions from SNP 25852 to 26452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:52,047 DEBUG Processing 336/664 atomic regions from SNP 100781 to 101381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:52,098 DEBUG Processing 357/654 atomic regions from SNP 107051 to 107651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:52,109 DEBUG Processing 501/775 atomic regions from SNP 150149 to 150749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:52,197 DEBUG Processing 424/684 atomic regions from SNP 126937 to 127537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:52,224 DEBUG Processing 88/591 atomic regions from SNP 26152 to 26752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:52,286 DEBUG Processing 337/664 atomic regions from SNP 101081 to 101681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:52,309 DEBUG Processing 358/654 atomic regions from SNP 107351 to 107951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:52,341 DEBUG Processing 502/775 atomic regions from SNP 150449 to 151049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:52,413 DEBUG Processing 425/684 atomic regions from SNP 127237 to 127837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:52,424 DEBUG Processing 89/591 atomic regions from SNP 26452 to 27052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:52,518 DEBUG Processing 359/654 atomic regions from SNP 107651 to 108251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:52,523 DEBUG Processing 338/664 atomic regions from SNP 101381 to 101981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:52,579 DEBUG Processing 503/775 atomic regions from SNP 150749 to 151349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:52,629 DEBUG Processing 90/591 atomic regions from SNP 26752 to 27352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:52,632 DEBUG Processing 426/684 atomic regions from SNP 127537 to 128137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:52,729 DEBUG Processing 360/654 atomic regions from SNP 107951 to 108551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:52,772 DEBUG Processing 339/664 atomic regions from SNP 101681 to 102281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:52,817 DEBUG Processing 504/775 atomic regions from SNP 151049 to 151649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:52,831 DEBUG Processing 91/591 atomic regions from SNP 27052 to 27652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:52,848 DEBUG Processing 427/684 atomic regions from SNP 127837 to 128437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:52,948 DEBUG Processing 361/654 atomic regions from SNP 108251 to 108851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:53,026 DEBUG Processing 340/664 atomic regions from SNP 101981 to 102581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:53,029 DEBUG Processing 92/591 atomic regions from SNP 27352 to 27952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:53,062 DEBUG Processing 505/775 atomic regions from SNP 151349 to 151949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:53,064 DEBUG Processing 428/684 atomic regions from SNP 128137 to 128737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:53,171 DEBUG Processing 362/654 atomic regions from SNP 108551 to 109151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:53,233 DEBUG Processing 93/591 atomic regions from SNP 27652 to 28252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:53,247 DEBUG Processing 341/664 atomic regions from SNP 102281 to 102881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:53,282 DEBUG Processing 429/684 atomic regions from SNP 128437 to 129037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:53,303 DEBUG Processing 506/775 atomic regions from SNP 151649 to 152249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:53,390 DEBUG Processing 363/654 atomic regions from SNP 108851 to 109451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:53,438 DEBUG Processing 94/591 atomic regions from SNP 27952 to 28552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:53,464 DEBUG Processing 342/664 atomic regions from SNP 102581 to 103181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:53,501 DEBUG Processing 430/684 atomic regions from SNP 128737 to 129337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:53,535 DEBUG Processing 507/775 atomic regions from SNP 151949 to 152549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:53,606 DEBUG Processing 364/654 atomic regions from SNP 109151 to 109751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:53,634 DEBUG Processing 95/591 atomic regions from SNP 28252 to 28852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:53,680 DEBUG Processing 343/664 atomic regions from SNP 102881 to 103481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:53,714 DEBUG Processing 431/684 atomic regions from SNP 129037 to 129637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:53,768 DEBUG Processing 508/775 atomic regions from SNP 152249 to 152849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:53,826 DEBUG Processing 365/654 atomic regions from SNP 109451 to 110051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:53,835 DEBUG Processing 96/591 atomic regions from SNP 28552 to 29152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:53,895 DEBUG Processing 344/664 atomic regions from SNP 103181 to 103781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:53,920 DEBUG Processing 432/684 atomic regions from SNP 129337 to 129937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:54,009 DEBUG Processing 509/775 atomic regions from SNP 152549 to 153149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:54,049 DEBUG Processing 97/591 atomic regions from SNP 28852 to 29452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:54,058 DEBUG Processing 366/654 atomic regions from SNP 109751 to 110351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:54,128 DEBUG Processing 345/664 atomic regions from SNP 103481 to 104081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:54,129 DEBUG Processing 433/684 atomic regions from SNP 129637 to 130237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:54,251 DEBUG Processing 510/775 atomic regions from SNP 152849 to 153449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:54,259 DEBUG Processing 98/591 atomic regions from SNP 29152 to 29752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:54,288 DEBUG Processing 367/654 atomic regions from SNP 110051 to 110651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:54,345 DEBUG Processing 346/664 atomic regions from SNP 103781 to 104381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:54,355 DEBUG Processing 434/684 atomic regions from SNP 129937 to 130537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:54,459 DEBUG Processing 99/591 atomic regions from SNP 29452 to 30052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:54,492 DEBUG Processing 511/775 atomic regions from SNP 153149 to 153749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:54,513 DEBUG Processing 368/654 atomic regions from SNP 110351 to 110951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:54,570 DEBUG Processing 347/664 atomic regions from SNP 104081 to 104681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:54,578 DEBUG Processing 435/684 atomic regions from SNP 130237 to 130837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:54,658 DEBUG Processing 100/591 atomic regions from SNP 29752 to 30352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:54,725 DEBUG Processing 512/775 atomic regions from SNP 153449 to 154049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:54,729 DEBUG Processing 369/654 atomic regions from SNP 110651 to 111251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:54,794 DEBUG Processing 436/684 atomic regions from SNP 130537 to 131137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:54,799 DEBUG Processing 348/664 atomic regions from SNP 104381 to 104981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:54,858 DEBUG Processing 101/591 atomic regions from SNP 30052 to 30652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:54,946 DEBUG Processing 370/654 atomic regions from SNP 110951 to 111551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:54,953 DEBUG Processing 513/775 atomic regions from SNP 153749 to 154349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:55,009 DEBUG Processing 437/684 atomic regions from SNP 130837 to 131437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:55,025 DEBUG Processing 349/664 atomic regions from SNP 104681 to 105281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:55,060 DEBUG Processing 102/591 atomic regions from SNP 30352 to 30952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:55,158 DEBUG Processing 371/654 atomic regions from SNP 111251 to 111851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:55,174 DEBUG Processing 514/775 atomic regions from SNP 154049 to 154649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:55,223 DEBUG Processing 438/684 atomic regions from SNP 131137 to 131737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:55,240 DEBUG Processing 350/664 atomic regions from SNP 104981 to 105581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:55,266 DEBUG Processing 103/591 atomic regions from SNP 30652 to 31252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:55,378 DEBUG Processing 372/654 atomic regions from SNP 111551 to 112151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:55,403 DEBUG Processing 515/775 atomic regions from SNP 154349 to 154949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:55,436 DEBUG Processing 439/684 atomic regions from SNP 131437 to 132037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:55,455 DEBUG Processing 351/664 atomic regions from SNP 105281 to 105881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:55,466 DEBUG Processing 104/591 atomic regions from SNP 30952 to 31552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:55,603 DEBUG Processing 373/654 atomic regions from SNP 111851 to 112451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:55,647 DEBUG Processing 516/775 atomic regions from SNP 154649 to 155249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:55,653 DEBUG Processing 440/684 atomic regions from SNP 131737 to 132337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:55,665 DEBUG Processing 105/591 atomic regions from SNP 31252 to 31852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:55,675 DEBUG Processing 352/664 atomic regions from SNP 105581 to 106181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:55,832 DEBUG Processing 374/654 atomic regions from SNP 112151 to 112751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:55,873 DEBUG Processing 106/591 atomic regions from SNP 31552 to 32152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:55,878 DEBUG Processing 441/684 atomic regions from SNP 132037 to 132637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:55,891 DEBUG Processing 517/775 atomic regions from SNP 154949 to 155549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:55,900 DEBUG Processing 353/664 atomic regions from SNP 105881 to 106481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:56,062 DEBUG Processing 375/654 atomic regions from SNP 112451 to 113051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:56,088 DEBUG Processing 107/591 atomic regions from SNP 31852 to 32452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:56,108 DEBUG Processing 442/684 atomic regions from SNP 132337 to 132937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:56,135 DEBUG Processing 354/664 atomic regions from SNP 106181 to 106781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:56,143 DEBUG Processing 518/775 atomic regions from SNP 155249 to 155849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:56,289 DEBUG Processing 376/654 atomic regions from SNP 112751 to 113351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:56,299 DEBUG Processing 108/591 atomic regions from SNP 32152 to 32752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:56,334 DEBUG Processing 443/684 atomic regions from SNP 132637 to 133237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:56,360 DEBUG Processing 355/664 atomic regions from SNP 106481 to 107081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:56,385 DEBUG Processing 519/775 atomic regions from SNP 155549 to 156149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:56,502 DEBUG Processing 109/591 atomic regions from SNP 32452 to 33052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:56,510 DEBUG Processing 377/654 atomic regions from SNP 113051 to 113651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:56,550 DEBUG Processing 444/684 atomic regions from SNP 132937 to 133537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:56,570 DEBUG Processing 356/664 atomic regions from SNP 106781 to 107381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:56,618 DEBUG Processing 520/775 atomic regions from SNP 155849 to 156449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:56,668 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:44:56,705 DEBUG Processing 110/591 atomic regions from SNP 32752 to 33352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:56,731 DEBUG Processing 378/654 atomic regions from SNP 113351 to 113951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:56,766 DEBUG Processing 445/684 atomic regions from SNP 133237 to 133837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:56,779 DEBUG Processing 357/664 atomic regions from SNP 107081 to 107681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:56,844 DEBUG Processing 521/775 atomic regions from SNP 156149 to 156749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:56,905 DEBUG Processing 111/591 atomic regions from SNP 33052 to 33652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:56,954 DEBUG Processing 379/654 atomic regions from SNP 113651 to 114251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:56,985 DEBUG Processing 446/684 atomic regions from SNP 133537 to 134137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:56,995 DEBUG Processing 358/664 atomic regions from SNP 107381 to 107981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:57,072 DEBUG Processing 522/775 atomic regions from SNP 156449 to 157049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:57,099 DEBUG Processing 112/591 atomic regions from SNP 33352 to 33952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:57,170 DEBUG Processing 380/654 atomic regions from SNP 113951 to 114551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:57,203 DEBUG Processing 447/684 atomic regions from SNP 133837 to 134437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:57,224 DEBUG Processing 359/664 atomic regions from SNP 107681 to 108281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:57,301 DEBUG Processing 113/591 atomic regions from SNP 33652 to 34252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:57,306 DEBUG Processing 523/775 atomic regions from SNP 156749 to 157349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:57,387 DEBUG Processing 381/654 atomic regions from SNP 114251 to 114851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:57,417 DEBUG Processing 448/684 atomic regions from SNP 134137 to 134737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:57,453 DEBUG Processing 360/664 atomic regions from SNP 107981 to 108581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:57,506 DEBUG Processing 114/591 atomic regions from SNP 33952 to 34552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:57,542 DEBUG Processing 524/775 atomic regions from SNP 157049 to 157649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:57,609 DEBUG Processing 382/654 atomic regions from SNP 114551 to 115151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:57,663 DEBUG Processing 449/684 atomic regions from SNP 134437 to 135037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:57,676 DEBUG Processing 361/664 atomic regions from SNP 108281 to 108881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:57,701 DEBUG Processing 115/591 atomic regions from SNP 34252 to 34852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:57,775 DEBUG Processing 525/775 atomic regions from SNP 157349 to 157949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:57,828 DEBUG Processing 383/654 atomic regions from SNP 114851 to 115451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:57,885 DEBUG Processing 450/684 atomic regions from SNP 134737 to 135337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:57,898 DEBUG Processing 362/664 atomic regions from SNP 108581 to 109181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:57,905 DEBUG Processing 116/591 atomic regions from SNP 34552 to 35152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:58,007 DEBUG Processing 526/775 atomic regions from SNP 157649 to 158249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:58,042 DEBUG Processing 384/654 atomic regions from SNP 115151 to 115751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:58,101 DEBUG Processing 451/684 atomic regions from SNP 135037 to 135637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:58,110 DEBUG Processing 117/591 atomic regions from SNP 34852 to 35452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:58,117 DEBUG Processing 363/664 atomic regions from SNP 108881 to 109481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:58,240 DEBUG Processing 527/775 atomic regions from SNP 157949 to 158549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:58,253 DEBUG Processing 385/654 atomic regions from SNP 115451 to 116051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:58,309 DEBUG Processing 118/591 atomic regions from SNP 35152 to 35752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:58,314 DEBUG Processing 452/684 atomic regions from SNP 135337 to 135937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:58,336 DEBUG Processing 364/664 atomic regions from SNP 109181 to 109781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:58,479 DEBUG Processing 386/654 atomic regions from SNP 115751 to 116351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:58,479 DEBUG Processing 528/775 atomic regions from SNP 158249 to 158849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:58,516 DEBUG Processing 119/591 atomic regions from SNP 35452 to 36052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:58,535 DEBUG Processing 453/684 atomic regions from SNP 135637 to 136237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:58,558 DEBUG Processing 365/664 atomic regions from SNP 109481 to 110081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:58,696 DEBUG Processing 387/654 atomic regions from SNP 116051 to 116651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:58,710 DEBUG Processing 529/775 atomic regions from SNP 158549 to 159149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:58,723 DEBUG Processing 120/591 atomic regions from SNP 35752 to 36352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:58,758 DEBUG Processing 454/684 atomic regions from SNP 135937 to 136537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:58,783 DEBUG Processing 366/664 atomic regions from SNP 109781 to 110381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:58,917 DEBUG Processing 388/654 atomic regions from SNP 116351 to 116951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:58,926 DEBUG Processing 121/591 atomic regions from SNP 36052 to 36652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:58,942 DEBUG Processing 530/775 atomic regions from SNP 158849 to 159449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:58,980 DEBUG Processing 455/684 atomic regions from SNP 136237 to 136837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:59,013 DEBUG Processing 367/664 atomic regions from SNP 110081 to 110681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:59,131 DEBUG Processing 122/591 atomic regions from SNP 36352 to 36952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:59,138 DEBUG Processing 389/654 atomic regions from SNP 116651 to 117251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:59,176 DEBUG Processing 531/775 atomic regions from SNP 159149 to 159749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:59,194 DEBUG Processing 456/684 atomic regions from SNP 136537 to 137137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:59,229 DEBUG Processing 368/664 atomic regions from SNP 110381 to 110981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:59,339 DEBUG Processing 123/591 atomic regions from SNP 36652 to 37252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:59,364 DEBUG Processing 390/654 atomic regions from SNP 116951 to 117551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:59,409 DEBUG Processing 457/684 atomic regions from SNP 136837 to 137437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:59,411 DEBUG Processing 532/775 atomic regions from SNP 159449 to 160049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:59,447 DEBUG Processing 369/664 atomic regions from SNP 110681 to 111281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:59,549 DEBUG Processing 124/591 atomic regions from SNP 36952 to 37552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:59,589 DEBUG Processing 391/654 atomic regions from SNP 117251 to 117851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:59,623 DEBUG Processing 458/684 atomic regions from SNP 137137 to 137737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:59,647 DEBUG Processing 533/775 atomic regions from SNP 159749 to 160349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:59,660 DEBUG Processing 370/664 atomic regions from SNP 110981 to 111581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:59,753 DEBUG Processing 125/591 atomic regions from SNP 37252 to 37852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:44:59,815 DEBUG Processing 392/654 atomic regions from SNP 117551 to 118151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:44:59,846 DEBUG Processing 459/684 atomic regions from SNP 137437 to 138037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:44:59,891 DEBUG Processing 371/664 atomic regions from SNP 111281 to 111881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:44:59,894 DEBUG Processing 534/775 atomic regions from SNP 160049 to 160649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:59,950 DEBUG Processing 126/591 atomic regions from SNP 37552 to 38152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:00,037 DEBUG Processing 393/654 atomic regions from SNP 117851 to 118451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:00,067 DEBUG Processing 460/684 atomic regions from SNP 137737 to 138337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:00,123 DEBUG Processing 372/664 atomic regions from SNP 111581 to 112181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:00,139 DEBUG Processing 535/775 atomic regions from SNP 160349 to 160949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:00,161 DEBUG Processing 127/591 atomic regions from SNP 37852 to 38452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:00,254 DEBUG Processing 394/654 atomic regions from SNP 118151 to 118751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:00,279 DEBUG Processing 461/684 atomic regions from SNP 138037 to 138637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:00,341 DEBUG Processing 373/664 atomic regions from SNP 111881 to 112481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:00,376 DEBUG Processing 536/775 atomic regions from SNP 160649 to 161249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:00,388 DEBUG Processing 128/591 atomic regions from SNP 38152 to 38752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:00,481 DEBUG Processing 395/654 atomic regions from SNP 118451 to 119051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:00,491 DEBUG Processing 462/684 atomic regions from SNP 138337 to 138937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:00,555 DEBUG Processing 374/664 atomic regions from SNP 112181 to 112781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:00,587 DEBUG Processing 129/591 atomic regions from SNP 38452 to 39052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:00,601 DEBUG Processing 537/775 atomic regions from SNP 160949 to 161549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:00,703 DEBUG Processing 396/654 atomic regions from SNP 118751 to 119351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:00,711 DEBUG Processing 463/684 atomic regions from SNP 138637 to 139237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:00,777 DEBUG Processing 375/664 atomic regions from SNP 112481 to 113081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:00,803 DEBUG Processing 130/591 atomic regions from SNP 38752 to 39352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:00,838 DEBUG Processing 538/775 atomic regions from SNP 161249 to 161849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:00,920 DEBUG Processing 397/654 atomic regions from SNP 119051 to 119651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:00,925 DEBUG Processing 464/684 atomic regions from SNP 138937 to 139537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:01,000 DEBUG Processing 376/664 atomic regions from SNP 112781 to 113381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:01,023 DEBUG Processing 131/591 atomic regions from SNP 39052 to 39652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:01,078 DEBUG Processing 539/775 atomic regions from SNP 161549 to 162149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:01,134 DEBUG Processing 398/654 atomic regions from SNP 119351 to 119951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:01,136 DEBUG Processing 465/684 atomic regions from SNP 139237 to 139837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:01,216 DEBUG Processing 377/664 atomic regions from SNP 113081 to 113681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:01,246 DEBUG Processing 132/591 atomic regions from SNP 39352 to 39952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:01,317 DEBUG Processing 540/775 atomic regions from SNP 161849 to 162449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:01,356 DEBUG Processing 466/684 atomic regions from SNP 139537 to 140137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:01,357 DEBUG Processing 399/654 atomic regions from SNP 119651 to 120251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:01,432 DEBUG Processing 378/664 atomic regions from SNP 113381 to 113981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:01,454 DEBUG Processing 133/591 atomic regions from SNP 39652 to 40252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:01,554 DEBUG Processing 541/775 atomic regions from SNP 162149 to 162749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:01,580 DEBUG Processing 467/684 atomic regions from SNP 139837 to 140437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:01,590 DEBUG Processing 400/654 atomic regions from SNP 119951 to 120551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:01,656 DEBUG Processing 134/591 atomic regions from SNP 39952 to 40552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:01,658 DEBUG Processing 379/664 atomic regions from SNP 113681 to 114281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:01,781 DEBUG Processing 542/775 atomic regions from SNP 162449 to 163049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:01,800 DEBUG Processing 468/684 atomic regions from SNP 140137 to 140737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:01,819 DEBUG Processing 401/654 atomic regions from SNP 120251 to 120851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:01,860 DEBUG Processing 135/591 atomic regions from SNP 40252 to 40852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:01,882 DEBUG Processing 380/664 atomic regions from SNP 113981 to 114581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:02,014 DEBUG Processing 543/775 atomic regions from SNP 162749 to 163349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:02,021 DEBUG Processing 469/684 atomic regions from SNP 140437 to 141037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:02,044 DEBUG Processing 402/654 atomic regions from SNP 120551 to 121151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:02,068 DEBUG Processing 136/591 atomic regions from SNP 40552 to 41152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:02,102 DEBUG Processing 381/664 atomic regions from SNP 114281 to 114881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:02,240 DEBUG Processing 470/684 atomic regions from SNP 140737 to 141337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:02,244 DEBUG Processing 544/775 atomic regions from SNP 163049 to 163649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:02,283 DEBUG Processing 137/591 atomic regions from SNP 40852 to 41452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:02,286 DEBUG Processing 403/654 atomic regions from SNP 120851 to 121451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:02,313 DEBUG Processing 382/664 atomic regions from SNP 114581 to 115181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:02,459 DEBUG Processing 471/684 atomic regions from SNP 141037 to 141637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:02,477 DEBUG Processing 545/775 atomic regions from SNP 163349 to 163949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:02,488 DEBUG Processing 138/591 atomic regions from SNP 41152 to 41752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:02,508 DEBUG Processing 404/654 atomic regions from SNP 121151 to 121751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:02,521 DEBUG Processing 383/664 atomic regions from SNP 114881 to 115481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:02,678 DEBUG Processing 472/684 atomic regions from SNP 141337 to 141937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:02,699 DEBUG Processing 139/591 atomic regions from SNP 41452 to 42052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:02,707 DEBUG Processing 546/775 atomic regions from SNP 163649 to 164249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:02,731 DEBUG Processing 405/654 atomic regions from SNP 121451 to 122051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:02,735 DEBUG Processing 384/664 atomic regions from SNP 115181 to 115781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:02,891 DEBUG Processing 473/684 atomic regions from SNP 141637 to 142237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:02,901 DEBUG Processing 140/591 atomic regions from SNP 41752 to 42352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:02,937 DEBUG Processing 547/775 atomic regions from SNP 163949 to 164549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:02,946 DEBUG Processing 385/664 atomic regions from SNP 115481 to 116081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:02,949 DEBUG Processing 406/654 atomic regions from SNP 121751 to 122351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:03,109 DEBUG Processing 141/591 atomic regions from SNP 42052 to 42652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:03,126 DEBUG Processing 474/684 atomic regions from SNP 141937 to 142537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:03,166 DEBUG Processing 386/664 atomic regions from SNP 115781 to 116381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:03,172 DEBUG Processing 407/654 atomic regions from SNP 122051 to 122651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:03,173 DEBUG Processing 548/775 atomic regions from SNP 164249 to 164849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:03,323 DEBUG Processing 142/591 atomic regions from SNP 42352 to 42952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:03,355 DEBUG Processing 475/684 atomic regions from SNP 142237 to 142837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:03,391 DEBUG Processing 387/664 atomic regions from SNP 116081 to 116681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:03,399 DEBUG Processing 408/654 atomic regions from SNP 122351 to 122951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:03,411 DEBUG Processing 549/775 atomic regions from SNP 164549 to 165149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:03,534 DEBUG Processing 143/591 atomic regions from SNP 42652 to 43252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:03,581 DEBUG Processing 476/684 atomic regions from SNP 142537 to 143137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:03,616 DEBUG Processing 388/664 atomic regions from SNP 116381 to 116981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:03,626 DEBUG Processing 409/654 atomic regions from SNP 122651 to 123251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:03,656 DEBUG Processing 550/775 atomic regions from SNP 164849 to 165449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:03,739 DEBUG Processing 144/591 atomic regions from SNP 42952 to 43552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:03,806 DEBUG Processing 477/684 atomic regions from SNP 142837 to 143437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:03,836 DEBUG Processing 389/664 atomic regions from SNP 116681 to 117281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:03,856 DEBUG Processing 410/654 atomic regions from SNP 122951 to 123551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:03,894 DEBUG Processing 551/775 atomic regions from SNP 165149 to 165749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:03,939 DEBUG Processing 145/591 atomic regions from SNP 43252 to 43852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:04,020 DEBUG Processing 478/684 atomic regions from SNP 143137 to 143737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:04,041 DEBUG Processing 390/664 atomic regions from SNP 116981 to 117581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:04,075 DEBUG Processing 411/654 atomic regions from SNP 123251 to 123851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:04,123 DEBUG Processing 552/775 atomic regions from SNP 165449 to 166049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:04,143 DEBUG Processing 146/591 atomic regions from SNP 43552 to 44152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:04,241 DEBUG Processing 479/684 atomic regions from SNP 143437 to 144037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:04,253 DEBUG Processing 391/664 atomic regions from SNP 117281 to 117881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:04,294 DEBUG Processing 412/654 atomic regions from SNP 123551 to 124151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:04,338 DEBUG Processing 147/591 atomic regions from SNP 43852 to 44452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:04,348 DEBUG Processing 553/775 atomic regions from SNP 165749 to 166349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:04,469 DEBUG Processing 480/684 atomic regions from SNP 143737 to 144337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:04,480 DEBUG Processing 392/664 atomic regions from SNP 117581 to 118181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:04,524 DEBUG Processing 413/654 atomic regions from SNP 123851 to 124451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:04,544 DEBUG Processing 148/591 atomic regions from SNP 44152 to 44752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:04,577 DEBUG Processing 554/775 atomic regions from SNP 166049 to 166649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:04,693 DEBUG Processing 481/684 atomic regions from SNP 144037 to 144637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:04,700 DEBUG Processing 393/664 atomic regions from SNP 117881 to 118481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:04,759 DEBUG Processing 149/591 atomic regions from SNP 44452 to 45052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:04,762 DEBUG Processing 414/654 atomic regions from SNP 124151 to 124751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:04,812 DEBUG Processing 555/775 atomic regions from SNP 166349 to 166949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:04,907 DEBUG Processing 482/684 atomic regions from SNP 144337 to 144937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:04,917 DEBUG Processing 394/664 atomic regions from SNP 118181 to 118781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:04,975 DEBUG Processing 150/591 atomic regions from SNP 44752 to 45352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:04,996 DEBUG Processing 415/654 atomic regions from SNP 124451 to 125051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:05,053 DEBUG Processing 556/775 atomic regions from SNP 166649 to 167249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,119 DEBUG Processing 483/684 atomic regions from SNP 144637 to 145237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:05,136 DEBUG Processing 395/664 atomic regions from SNP 118481 to 119081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:05,174 DEBUG Processing 151/591 atomic regions from SNP 45052 to 45652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:05,218 DEBUG Processing 416/654 atomic regions from SNP 124751 to 125351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:05,279 DEBUG Processing 557/775 atomic regions from SNP 166949 to 167549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,339 DEBUG Processing 484/684 atomic regions from SNP 144937 to 145537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:05,362 DEBUG Processing 396/664 atomic regions from SNP 118781 to 119381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:05,376 DEBUG Processing 152/591 atomic regions from SNP 45352 to 45952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:05,433 DEBUG Processing 417/654 atomic regions from SNP 125051 to 125651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:05,502 DEBUG Processing 558/775 atomic regions from SNP 167249 to 167849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,562 DEBUG Processing 485/684 atomic regions from SNP 145237 to 145837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:05,584 DEBUG Processing 397/664 atomic regions from SNP 119081 to 119681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:05,600 DEBUG Processing 153/591 atomic regions from SNP 45652 to 46252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:05,658 DEBUG Processing 418/654 atomic regions from SNP 125351 to 125951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:05,728 DEBUG Processing 559/775 atomic regions from SNP 167549 to 168149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,776 DEBUG Processing 486/684 atomic regions from SNP 145537 to 146137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:05,797 DEBUG Processing 398/664 atomic regions from SNP 119381 to 119981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:05,810 DEBUG Processing 154/591 atomic regions from SNP 45952 to 46552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:05,887 DEBUG Processing 419/654 atomic regions from SNP 125651 to 126251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:05,959 DEBUG Processing 560/775 atomic regions from SNP 167849 to 168449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,989 DEBUG Processing 487/684 atomic regions from SNP 145837 to 146437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:06,007 DEBUG Processing 399/664 atomic regions from SNP 119681 to 120281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:06,008 DEBUG Processing 155/591 atomic regions from SNP 46252 to 46852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:06,105 DEBUG Processing 420/654 atomic regions from SNP 125951 to 126551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:06,192 DEBUG Processing 561/775 atomic regions from SNP 168149 to 168749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:06,209 DEBUG Processing 488/684 atomic regions from SNP 146137 to 146737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:06,212 DEBUG Processing 156/591 atomic regions from SNP 46552 to 47152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:06,219 DEBUG Processing 400/664 atomic regions from SNP 119981 to 120581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:06,315 DEBUG Processing 421/654 atomic regions from SNP 126251 to 126851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:06,423 DEBUG Processing 157/591 atomic regions from SNP 46852 to 47452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:06,429 DEBUG Processing 562/775 atomic regions from SNP 168449 to 169049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:06,435 DEBUG Processing 489/684 atomic regions from SNP 146437 to 147037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:06,441 DEBUG Processing 401/664 atomic regions from SNP 120281 to 120881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:06,527 DEBUG Processing 422/654 atomic regions from SNP 126551 to 127151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:06,628 DEBUG Processing 158/591 atomic regions from SNP 47152 to 47752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:06,659 DEBUG Processing 490/684 atomic regions from SNP 146737 to 147337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:06,667 DEBUG Processing 402/664 atomic regions from SNP 120581 to 121181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:06,674 DEBUG Processing 563/775 atomic regions from SNP 168749 to 169349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:06,756 DEBUG Processing 423/654 atomic regions from SNP 126851 to 127451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:06,819 DEBUG Processing 159/591 atomic regions from SNP 47452 to 48052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:06,863 DEBUG Processing 491/684 atomic regions from SNP 147037 to 147637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:06,885 DEBUG Processing 403/664 atomic regions from SNP 120881 to 121481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:06,910 DEBUG Processing 564/775 atomic regions from SNP 169049 to 169649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:06,988 DEBUG Processing 424/654 atomic regions from SNP 127151 to 127751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:07,025 DEBUG Processing 160/591 atomic regions from SNP 47752 to 48352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:07,070 DEBUG Processing 492/684 atomic regions from SNP 147337 to 147937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:07,099 DEBUG Processing 404/664 atomic regions from SNP 121181 to 121781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:07,142 DEBUG Processing 565/775 atomic regions from SNP 169349 to 169949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:07,214 DEBUG Processing 425/654 atomic regions from SNP 127451 to 128051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:07,238 DEBUG Processing 161/591 atomic regions from SNP 48052 to 48652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:07,290 DEBUG Processing 493/684 atomic regions from SNP 147637 to 148237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:07,318 DEBUG Processing 405/664 atomic regions from SNP 121481 to 122081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:07,370 DEBUG Processing 566/775 atomic regions from SNP 169649 to 170249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:07,430 DEBUG Processing 426/654 atomic regions from SNP 127751 to 128351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:07,441 DEBUG Processing 162/591 atomic regions from SNP 48352 to 48952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:07,512 DEBUG Processing 494/684 atomic regions from SNP 147937 to 148537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:07,553 DEBUG Processing 406/664 atomic regions from SNP 121781 to 122381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:07,615 DEBUG Processing 567/775 atomic regions from SNP 169949 to 170549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:07,642 DEBUG Processing 163/591 atomic regions from SNP 48652 to 49252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:07,647 DEBUG Processing 427/654 atomic regions from SNP 128051 to 128651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:07,717 DEBUG Processing 495/684 atomic regions from SNP 148237 to 148837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:07,795 DEBUG Processing 407/664 atomic regions from SNP 122081 to 122681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:07,852 DEBUG Processing 164/591 atomic regions from SNP 48952 to 49552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:07,864 DEBUG Processing 568/775 atomic regions from SNP 170249 to 170849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:07,873 DEBUG Processing 428/654 atomic regions from SNP 128351 to 128951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:07,928 DEBUG Processing 496/684 atomic regions from SNP 148537 to 149137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:08,040 DEBUG Processing 408/664 atomic regions from SNP 122381 to 122981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:08,055 DEBUG Processing 165/591 atomic regions from SNP 49252 to 49852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:08,098 DEBUG Processing 429/654 atomic regions from SNP 128651 to 129251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:08,108 DEBUG Processing 569/775 atomic regions from SNP 170549 to 171149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:08,148 DEBUG Processing 497/684 atomic regions from SNP 148837 to 149437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:08,244 DEBUG Processing 166/591 atomic regions from SNP 49552 to 50152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:08,261 DEBUG Processing 409/664 atomic regions from SNP 122681 to 123281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:08,316 DEBUG Processing 430/654 atomic regions from SNP 128951 to 129551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:08,352 DEBUG Processing 570/775 atomic regions from SNP 170849 to 171449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:08,369 DEBUG Processing 498/684 atomic regions from SNP 149137 to 149737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:08,441 DEBUG Processing 167/591 atomic regions from SNP 49852 to 50452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:08,473 DEBUG Processing 410/664 atomic regions from SNP 122981 to 123581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:08,525 DEBUG Processing 431/654 atomic regions from SNP 129251 to 129851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:08,585 DEBUG Processing 499/684 atomic regions from SNP 149437 to 150037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:08,592 DEBUG Processing 571/775 atomic regions from SNP 171149 to 171749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:08,647 DEBUG Processing 168/591 atomic regions from SNP 50152 to 50752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:08,703 DEBUG Processing 411/664 atomic regions from SNP 123281 to 123881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:08,736 DEBUG Processing 432/654 atomic regions from SNP 129551 to 130151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:08,792 DEBUG Processing 500/684 atomic regions from SNP 149737 to 150337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:08,829 DEBUG Processing 572/775 atomic regions from SNP 171449 to 172049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:08,846 DEBUG Processing 169/591 atomic regions from SNP 50452 to 51052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:08,956 DEBUG Processing 433/654 atomic regions from SNP 129851 to 130451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:08,959 DEBUG Processing 412/664 atomic regions from SNP 123581 to 124181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:09,004 DEBUG Processing 501/684 atomic regions from SNP 150037 to 150637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:09,042 DEBUG Processing 170/591 atomic regions from SNP 50752 to 51352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:09,070 DEBUG Processing 573/775 atomic regions from SNP 171749 to 172349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:09,169 DEBUG Processing 434/654 atomic regions from SNP 130151 to 130751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:09,206 DEBUG Processing 413/664 atomic regions from SNP 123881 to 124481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:09,217 DEBUG Processing 502/684 atomic regions from SNP 150337 to 150937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:09,243 DEBUG Processing 171/591 atomic regions from SNP 51052 to 51652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:09,309 DEBUG Processing 574/775 atomic regions from SNP 172049 to 172649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:09,380 DEBUG Processing 435/654 atomic regions from SNP 130451 to 131051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:09,426 DEBUG Processing 503/684 atomic regions from SNP 150637 to 151237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:09,439 DEBUG Processing 172/591 atomic regions from SNP 51352 to 51952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:09,460 DEBUG Processing 414/664 atomic regions from SNP 124181 to 124781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:09,548 DEBUG Processing 575/775 atomic regions from SNP 172349 to 172949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:09,604 DEBUG Processing 436/654 atomic regions from SNP 130751 to 131351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:09,638 DEBUG Processing 173/591 atomic regions from SNP 51652 to 52252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:09,640 DEBUG Processing 504/684 atomic regions from SNP 150937 to 151537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:09,685 DEBUG Processing 415/664 atomic regions from SNP 124481 to 125081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:09,778 DEBUG Processing 576/775 atomic regions from SNP 172649 to 173249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:09,822 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:45:09,824 DEBUG chr9: Signal quantile: 0.993. signal threshold: 9. Best RMSEA: 0.020 2025-01-31 09:45:09,828 DEBUG Processing 437/654 atomic regions from SNP 131051 to 131651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:09,851 DEBUG Processing 174/591 atomic regions from SNP 51952 to 52552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:09,865 DEBUG Processing 505/684 atomic regions from SNP 151237 to 151837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:09,916 DEBUG Processing 416/664 atomic regions from SNP 124781 to 125381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:10,027 DEBUG Processing 577/775 atomic regions from SNP 172949 to 173549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:10,046 DEBUG Processing 438/654 atomic regions from SNP 131351 to 131951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:10,058 DEBUG Processing 175/591 atomic regions from SNP 52252 to 52852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:10,088 DEBUG Processing 506/684 atomic regions from SNP 151537 to 152137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:10,144 DEBUG Processing 417/664 atomic regions from SNP 125081 to 125681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:10,251 DEBUG Processing 176/591 atomic regions from SNP 52552 to 53152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:10,259 DEBUG Processing 439/654 atomic regions from SNP 131651 to 132251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:10,287 DEBUG Processing 578/775 atomic regions from SNP 173249 to 173849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:10,302 DEBUG Processing 507/684 atomic regions from SNP 151837 to 152437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:10,368 DEBUG Processing 418/664 atomic regions from SNP 125381 to 125981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:10,450 DEBUG Processing 177/591 atomic regions from SNP 52852 to 53452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:10,476 DEBUG Processing 440/654 atomic regions from SNP 131951 to 132551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:10,512 DEBUG Processing 508/684 atomic regions from SNP 152137 to 152737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:10,555 DEBUG Processing 579/775 atomic regions from SNP 173549 to 174149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:10,597 DEBUG Processing 419/664 atomic regions from SNP 125681 to 126281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:10,649 DEBUG Processing 178/591 atomic regions from SNP 53152 to 53752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:10,692 DEBUG Processing 441/654 atomic regions from SNP 132251 to 132851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:10,724 DEBUG Processing 509/684 atomic regions from SNP 152437 to 153037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:10,824 DEBUG Processing 580/775 atomic regions from SNP 173849 to 174449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:10,827 DEBUG Processing 420/664 atomic regions from SNP 125981 to 126581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:10,850 DEBUG Processing 179/591 atomic regions from SNP 53452 to 54052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:10,911 DEBUG Processing 442/654 atomic regions from SNP 132551 to 133151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:10,937 DEBUG Processing 510/684 atomic regions from SNP 152737 to 153337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:11,046 DEBUG Processing 180/591 atomic regions from SNP 53752 to 54352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:11,059 DEBUG Processing 421/664 atomic regions from SNP 126281 to 126881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:11,086 DEBUG Processing 581/775 atomic regions from SNP 174149 to 174749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:11,142 DEBUG Processing 443/654 atomic regions from SNP 132851 to 133451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:11,153 DEBUG Processing 511/684 atomic regions from SNP 153037 to 153637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:11,245 DEBUG Processing 181/591 atomic regions from SNP 54052 to 54652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:11,276 DEBUG Processing 422/664 atomic regions from SNP 126581 to 127181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:11,326 DEBUG Processing 582/775 atomic regions from SNP 174449 to 175049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:11,355 DEBUG Processing 444/654 atomic regions from SNP 133151 to 133751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:11,364 DEBUG Processing 512/684 atomic regions from SNP 153337 to 153937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:11,447 DEBUG Processing 182/591 atomic regions from SNP 54352 to 54952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:11,494 DEBUG Processing 423/664 atomic regions from SNP 126881 to 127481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:11,559 DEBUG Processing 583/775 atomic regions from SNP 174749 to 175349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:11,568 DEBUG Processing 445/654 atomic regions from SNP 133451 to 134051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:11,572 DEBUG Processing 513/684 atomic regions from SNP 153637 to 154237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:11,641 DEBUG Processing 183/591 atomic regions from SNP 54652 to 55252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:11,717 DEBUG Processing 424/664 atomic regions from SNP 127181 to 127781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:11,784 DEBUG Processing 514/684 atomic regions from SNP 153937 to 154537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:11,785 DEBUG Processing 446/654 atomic regions from SNP 133751 to 134351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:11,790 DEBUG Processing 584/775 atomic regions from SNP 175049 to 175649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:11,831 DEBUG Processing 184/591 atomic regions from SNP 54952 to 55552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:11,941 DEBUG Processing 425/664 atomic regions from SNP 127481 to 128081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:12,004 DEBUG Processing 515/684 atomic regions from SNP 154237 to 154837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:12,008 DEBUG Processing 447/654 atomic regions from SNP 134051 to 134651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:12,035 DEBUG Processing 585/775 atomic regions from SNP 175349 to 175949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:12,039 DEBUG Processing 185/591 atomic regions from SNP 55252 to 55852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:12,154 DEBUG Processing 426/664 atomic regions from SNP 127781 to 128381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:12,197 DEBUG chr9 total SNP count: 204389 2025-01-31 09:45:12,198 DEBUG chr9 length: 124595110 2025-01-31 09:45:12,198 DEBUG ----------------------------------------- 2025-01-31 09:45:12,198 INFO Processing SNPs in chr9 2025-01-31 09:45:12,212 DEBUG Processing 516/684 atomic regions from SNP 154537 to 155137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:12,221 DEBUG Processing 448/654 atomic regions from SNP 134351 to 134951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:12,241 DEBUG Processing 186/591 atomic regions from SNP 55552 to 56152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:12,282 DEBUG Processing 586/775 atomic regions from SNP 175649 to 176249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:12,366 DEBUG Processing 427/664 atomic regions from SNP 128081 to 128681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:12,411 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 204389)] 2025-01-31 09:45:12,413 DEBUG Processing 517/684 atomic regions from SNP 154837 to 155437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:12,428 DEBUG Processing 449/654 atomic regions from SNP 134651 to 135251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:12,429 DEBUG Processing 187/591 atomic regions from SNP 55852 to 56452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:12,520 DEBUG Processing 587/775 atomic regions from SNP 175949 to 176549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:12,556 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:12,590 DEBUG Processing 428/664 atomic regions from SNP 128381 to 128981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:12,626 DEBUG Processing 188/591 atomic regions from SNP 56152 to 56752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:12,628 DEBUG Processing 518/684 atomic regions from SNP 155137 to 155737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:12,645 DEBUG Processing 450/654 atomic regions from SNP 134951 to 135551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:12,750 DEBUG Processing 588/775 atomic regions from SNP 176249 to 176849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:12,824 DEBUG Processing 429/664 atomic regions from SNP 128681 to 129281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:12,836 DEBUG Processing 189/591 atomic regions from SNP 56452 to 57052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:12,851 DEBUG Processing 519/684 atomic regions from SNP 155437 to 156037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:12,868 DEBUG Processing 451/654 atomic regions from SNP 135251 to 135851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:12,974 DEBUG Processing 589/775 atomic regions from SNP 176549 to 177149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:13,033 DEBUG Processing 190/591 atomic regions from SNP 56752 to 57352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:13,047 DEBUG Processing 430/664 atomic regions from SNP 128981 to 129581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:13,063 DEBUG Processing 520/684 atomic regions from SNP 155737 to 156337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:13,084 DEBUG Processing 452/654 atomic regions from SNP 135551 to 136151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:13,206 DEBUG Processing 590/775 atomic regions from SNP 176849 to 177449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:13,227 DEBUG Processing 191/591 atomic regions from SNP 57052 to 57652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:13,265 DEBUG Processing 431/664 atomic regions from SNP 129281 to 129881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:13,274 DEBUG Processing 521/684 atomic regions from SNP 156037 to 156637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:13,295 DEBUG Processing 453/654 atomic regions from SNP 135851 to 136451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:13,424 DEBUG Processing 192/591 atomic regions from SNP 57352 to 57952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:13,441 DEBUG Processing 591/775 atomic regions from SNP 177149 to 177749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:13,485 DEBUG Processing 432/664 atomic regions from SNP 129581 to 130181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:13,487 DEBUG Processing 522/684 atomic regions from SNP 156337 to 156937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:13,511 DEBUG Processing 454/654 atomic regions from SNP 136151 to 136751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:13,620 DEBUG Processing 193/591 atomic regions from SNP 57652 to 58252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:13,674 DEBUG Processing 592/775 atomic regions from SNP 177449 to 178049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:13,696 DEBUG Processing 523/684 atomic regions from SNP 156637 to 157237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:13,705 DEBUG Processing 433/664 atomic regions from SNP 129881 to 130481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:13,725 DEBUG Processing 455/654 atomic regions from SNP 136451 to 137051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:13,813 DEBUG Processing 194/591 atomic regions from SNP 57952 to 58552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:13,902 DEBUG Processing 524/684 atomic regions from SNP 156937 to 157537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:13,911 DEBUG Processing 593/775 atomic regions from SNP 177749 to 178349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:13,923 DEBUG Processing 434/664 atomic regions from SNP 130181 to 130781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:13,938 DEBUG Processing 456/654 atomic regions from SNP 136751 to 137351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:14,010 DEBUG Processing 195/591 atomic regions from SNP 58252 to 58852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:14,111 DEBUG Processing 525/684 atomic regions from SNP 157237 to 157837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:14,137 DEBUG Processing 435/664 atomic regions from SNP 130481 to 131081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:14,148 DEBUG Processing 457/654 atomic regions from SNP 137051 to 137651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:14,149 DEBUG Processing 594/775 atomic regions from SNP 178049 to 178649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:14,203 DEBUG Processing 196/591 atomic regions from SNP 58552 to 59152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:14,322 DEBUG Processing 526/684 atomic regions from SNP 157537 to 158137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:14,354 DEBUG Processing 436/664 atomic regions from SNP 130781 to 131381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:14,363 DEBUG Processing 458/654 atomic regions from SNP 137351 to 137951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:14,386 DEBUG Processing 595/775 atomic regions from SNP 178349 to 178949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:14,397 DEBUG Processing 197/591 atomic regions from SNP 58852 to 59452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:14,530 DEBUG Processing 527/684 atomic regions from SNP 157837 to 158437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:14,571 DEBUG Processing 437/664 atomic regions from SNP 131081 to 131681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:14,577 DEBUG Processing 459/654 atomic regions from SNP 137651 to 138251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:14,592 DEBUG Processing 198/591 atomic regions from SNP 59152 to 59752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:14,621 DEBUG Processing 596/775 atomic regions from SNP 178649 to 179249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:14,737 DEBUG Processing 528/684 atomic regions from SNP 158137 to 158737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:14,784 DEBUG Processing 438/664 atomic regions from SNP 131381 to 131981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:14,785 DEBUG Processing 199/591 atomic regions from SNP 59452 to 60052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:14,789 DEBUG Processing 460/654 atomic regions from SNP 137951 to 138551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:14,851 DEBUG Processing 597/775 atomic regions from SNP 178949 to 179549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:14,949 DEBUG Processing 529/684 atomic regions from SNP 158437 to 159037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:14,981 DEBUG Processing 200/591 atomic regions from SNP 59752 to 60352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:15,002 DEBUG Processing 461/654 atomic regions from SNP 138251 to 138851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:15,007 DEBUG Processing 439/664 atomic regions from SNP 131681 to 132281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:15,078 DEBUG Processing 598/775 atomic regions from SNP 179249 to 179849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:15,165 DEBUG Processing 530/684 atomic regions from SNP 158737 to 159337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:15,183 DEBUG Processing 201/591 atomic regions from SNP 60052 to 60652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:15,221 DEBUG Processing 462/654 atomic regions from SNP 138551 to 139151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:15,232 DEBUG Processing 440/664 atomic regions from SNP 131981 to 132581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:15,311 DEBUG Processing 599/775 atomic regions from SNP 179549 to 180149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:15,378 DEBUG Processing 531/684 atomic regions from SNP 159037 to 159637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:15,386 DEBUG Processing 202/591 atomic regions from SNP 60352 to 60952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:15,441 DEBUG Processing 463/654 atomic regions from SNP 138851 to 139451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:15,453 DEBUG Processing 441/664 atomic regions from SNP 132281 to 132881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:15,548 DEBUG Processing 600/775 atomic regions from SNP 179849 to 180449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:15,579 DEBUG Processing 203/591 atomic regions from SNP 60652 to 61252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:15,586 DEBUG Processing 532/684 atomic regions from SNP 159337 to 159937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:15,658 DEBUG Processing 464/654 atomic regions from SNP 139151 to 139751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:15,668 DEBUG Processing 442/664 atomic regions from SNP 132581 to 133181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:15,771 DEBUG Processing 204/591 atomic regions from SNP 60952 to 61552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:15,787 DEBUG Processing 601/775 atomic regions from SNP 180149 to 180749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:15,790 DEBUG Processing 533/684 atomic regions from SNP 159637 to 160237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:15,867 DEBUG Processing 465/654 atomic regions from SNP 139451 to 140051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:15,882 DEBUG Processing 443/664 atomic regions from SNP 132881 to 133481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:15,973 DEBUG Processing 205/591 atomic regions from SNP 61252 to 61852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:16,002 DEBUG Processing 534/684 atomic regions from SNP 159937 to 160537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:16,025 DEBUG Processing 602/775 atomic regions from SNP 180449 to 181049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:16,074 DEBUG Processing 466/654 atomic regions from SNP 139751 to 140351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:16,101 DEBUG Processing 444/664 atomic regions from SNP 133181 to 133781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:16,171 DEBUG Processing 206/591 atomic regions from SNP 61552 to 62152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:16,218 DEBUG Processing 535/684 atomic regions from SNP 160237 to 160837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:16,256 DEBUG Processing 603/775 atomic regions from SNP 180749 to 181349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:16,286 DEBUG Processing 467/654 atomic regions from SNP 140051 to 140651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:16,322 DEBUG Processing 445/664 atomic regions from SNP 133481 to 134081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:16,363 DEBUG Processing 207/591 atomic regions from SNP 61852 to 62452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:16,427 DEBUG Processing 536/684 atomic regions from SNP 160537 to 161137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:16,489 DEBUG Processing 604/775 atomic regions from SNP 181049 to 181649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:16,502 DEBUG Processing 468/654 atomic regions from SNP 140351 to 140951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:16,544 DEBUG Processing 446/664 atomic regions from SNP 133781 to 134381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:16,555 DEBUG Processing 208/591 atomic regions from SNP 62152 to 62752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:16,634 DEBUG Processing 537/684 atomic regions from SNP 160837 to 161437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:16,715 DEBUG Processing 469/654 atomic regions from SNP 140651 to 141251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:16,739 DEBUG Processing 605/775 atomic regions from SNP 181349 to 181949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:16,749 DEBUG Processing 209/591 atomic regions from SNP 62452 to 63052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:16,770 DEBUG Processing 447/664 atomic regions from SNP 134081 to 134681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:16,843 DEBUG Processing 538/684 atomic regions from SNP 161137 to 161737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:16,927 DEBUG Processing 470/654 atomic regions from SNP 140951 to 141551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:16,942 DEBUG Processing 210/591 atomic regions from SNP 62752 to 63352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:16,985 DEBUG Processing 448/664 atomic regions from SNP 134381 to 134981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:16,990 DEBUG Processing 606/775 atomic regions from SNP 181649 to 182249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:17,050 DEBUG Processing 539/684 atomic regions from SNP 161437 to 162037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:17,135 DEBUG Processing 211/591 atomic regions from SNP 63052 to 63652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:17,141 DEBUG Processing 471/654 atomic regions from SNP 141251 to 141851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:17,192 DEBUG Processing 449/664 atomic regions from SNP 134681 to 135281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:17,215 DEBUG Processing 607/775 atomic regions from SNP 181949 to 182549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:17,258 DEBUG Processing 540/684 atomic regions from SNP 161737 to 162337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:17,334 DEBUG Processing 212/591 atomic regions from SNP 63352 to 63952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:17,358 DEBUG Processing 472/654 atomic regions from SNP 141551 to 142151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:17,407 DEBUG Processing 450/664 atomic regions from SNP 134981 to 135581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:17,443 DEBUG Processing 608/775 atomic regions from SNP 182249 to 182849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:17,460 DEBUG Processing 541/684 atomic regions from SNP 162037 to 162637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:17,530 DEBUG Processing 213/591 atomic regions from SNP 63652 to 64252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:17,572 DEBUG Processing 473/654 atomic regions from SNP 141851 to 142451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:17,636 DEBUG Processing 451/664 atomic regions from SNP 135281 to 135881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:17,669 DEBUG Processing 542/684 atomic regions from SNP 162337 to 162937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:17,686 DEBUG Processing 609/775 atomic regions from SNP 182549 to 183149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:17,739 DEBUG Processing 214/591 atomic regions from SNP 63952 to 64552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:17,793 DEBUG Processing 474/654 atomic regions from SNP 142151 to 142751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:17,854 DEBUG Processing 452/664 atomic regions from SNP 135581 to 136181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:17,872 DEBUG Processing 543/684 atomic regions from SNP 162637 to 163237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:17,921 DEBUG Processing 610/775 atomic regions from SNP 182849 to 183449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:17,933 DEBUG Processing 215/591 atomic regions from SNP 64252 to 64852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:18,014 DEBUG Processing 475/654 atomic regions from SNP 142451 to 143051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:18,074 DEBUG Processing 453/664 atomic regions from SNP 135881 to 136481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:18,083 DEBUG Processing 544/684 atomic regions from SNP 162937 to 163537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:18,125 DEBUG Processing 216/591 atomic regions from SNP 64552 to 65152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:18,153 DEBUG Processing 611/775 atomic regions from SNP 183149 to 183749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:18,226 DEBUG Processing 476/654 atomic regions from SNP 142751 to 143351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:18,297 DEBUG Processing 454/664 atomic regions from SNP 136181 to 136781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:18,299 DEBUG Processing 545/684 atomic regions from SNP 163237 to 163837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:18,324 DEBUG Processing 217/591 atomic regions from SNP 64852 to 65452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:18,389 DEBUG Processing 612/775 atomic regions from SNP 183449 to 184049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:18,434 DEBUG Processing 477/654 atomic regions from SNP 143051 to 143651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:18,506 DEBUG Processing 546/684 atomic regions from SNP 163537 to 164137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:18,518 DEBUG Processing 455/664 atomic regions from SNP 136481 to 137081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:18,524 DEBUG Processing 218/591 atomic regions from SNP 65152 to 65752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:18,626 DEBUG Processing 613/775 atomic regions from SNP 183749 to 184349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:18,646 DEBUG Processing 478/654 atomic regions from SNP 143351 to 143951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:18,711 DEBUG Processing 547/684 atomic regions from SNP 163837 to 164437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:18,714 DEBUG Processing 219/591 atomic regions from SNP 65452 to 66052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:18,734 DEBUG Processing 456/664 atomic regions from SNP 136781 to 137381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:18,856 DEBUG Processing 479/654 atomic regions from SNP 143651 to 144251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:18,861 DEBUG Processing 614/775 atomic regions from SNP 184049 to 184649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:18,906 DEBUG Processing 220/591 atomic regions from SNP 65752 to 66352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:18,919 DEBUG Processing 548/684 atomic regions from SNP 164137 to 164737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:18,950 DEBUG Processing 457/664 atomic regions from SNP 137081 to 137681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:19,069 DEBUG Processing 480/654 atomic regions from SNP 143951 to 144551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:19,099 DEBUG Processing 221/591 atomic regions from SNP 66052 to 66652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:19,108 DEBUG Processing 615/775 atomic regions from SNP 184349 to 184949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:19,124 DEBUG Processing 549/684 atomic regions from SNP 164437 to 165037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:19,168 DEBUG Processing 458/664 atomic regions from SNP 137381 to 137981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:19,285 DEBUG Processing 481/654 atomic regions from SNP 144251 to 144851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:19,299 DEBUG Processing 222/591 atomic regions from SNP 66352 to 66952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:19,334 DEBUG Processing 550/684 atomic regions from SNP 164737 to 165337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:19,339 DEBUG Processing 616/775 atomic regions from SNP 184649 to 185249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:19,385 DEBUG Processing 459/664 atomic regions from SNP 137681 to 138281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:19,500 DEBUG Processing 223/591 atomic regions from SNP 66652 to 67252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:19,505 DEBUG Processing 482/654 atomic regions from SNP 144551 to 145151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:19,548 DEBUG Processing 551/684 atomic regions from SNP 165037 to 165637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:19,575 DEBUG Processing 617/775 atomic regions from SNP 184949 to 185549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:19,598 DEBUG Processing 460/664 atomic regions from SNP 137981 to 138581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:19,707 DEBUG Processing 224/591 atomic regions from SNP 66952 to 67552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:19,720 DEBUG Processing 483/654 atomic regions from SNP 144851 to 145451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:19,759 DEBUG Processing 552/684 atomic regions from SNP 165337 to 165937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:19,814 DEBUG Processing 618/775 atomic regions from SNP 185249 to 185849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:19,818 DEBUG Processing 461/664 atomic regions from SNP 138281 to 138881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:19,915 DEBUG Processing 225/591 atomic regions from SNP 67252 to 67852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:19,930 DEBUG Processing 484/654 atomic regions from SNP 145151 to 145751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:19,965 DEBUG Processing 553/684 atomic regions from SNP 165637 to 166237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:20,040 DEBUG Processing 462/664 atomic regions from SNP 138581 to 139181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:20,054 DEBUG Processing 619/775 atomic regions from SNP 185549 to 186149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:20,117 DEBUG Processing 226/591 atomic regions from SNP 67552 to 68152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:20,149 DEBUG Processing 485/654 atomic regions from SNP 145451 to 146051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:20,177 DEBUG Processing 554/684 atomic regions from SNP 165937 to 166537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:20,258 DEBUG Processing 463/664 atomic regions from SNP 138881 to 139481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:20,289 DEBUG Processing 620/775 atomic regions from SNP 185849 to 186449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:20,314 DEBUG Processing 227/591 atomic regions from SNP 67852 to 68452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:20,369 DEBUG Processing 486/654 atomic regions from SNP 145751 to 146351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:20,391 DEBUG Processing 555/684 atomic regions from SNP 166237 to 166837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:20,482 DEBUG Processing 464/664 atomic regions from SNP 139181 to 139781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:20,504 DEBUG Processing 228/591 atomic regions from SNP 68152 to 68752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:20,527 DEBUG Processing 621/775 atomic regions from SNP 186149 to 186749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:20,580 DEBUG Processing 487/654 atomic regions from SNP 146051 to 146651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:20,601 DEBUG Processing 556/684 atomic regions from SNP 166537 to 167137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:20,710 DEBUG Processing 465/664 atomic regions from SNP 139481 to 140081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:20,722 DEBUG Processing 229/591 atomic regions from SNP 68452 to 69052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:20,773 DEBUG Processing 622/775 atomic regions from SNP 186449 to 187049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:20,792 DEBUG Processing 488/654 atomic regions from SNP 146351 to 146951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:20,805 DEBUG Processing 557/684 atomic regions from SNP 166837 to 167437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:20,927 DEBUG Processing 466/664 atomic regions from SNP 139781 to 140381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:20,943 DEBUG Processing 230/591 atomic regions from SNP 68752 to 69352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:21,013 DEBUG Processing 489/654 atomic regions from SNP 146651 to 147251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:21,019 DEBUG Processing 623/775 atomic regions from SNP 186749 to 187349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,020 DEBUG Processing 558/684 atomic regions from SNP 167137 to 167737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:21,140 DEBUG Processing 467/664 atomic regions from SNP 140081 to 140681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:21,159 DEBUG Processing 231/591 atomic regions from SNP 69052 to 69652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:21,226 DEBUG Processing 490/654 atomic regions from SNP 146951 to 147551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:21,229 DEBUG Processing 559/684 atomic regions from SNP 167437 to 168037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:21,268 DEBUG Processing 624/775 atomic regions from SNP 187049 to 187649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,350 DEBUG Processing 232/591 atomic regions from SNP 69352 to 69952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:21,364 DEBUG Processing 468/664 atomic regions from SNP 140381 to 140981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:21,435 DEBUG Processing 560/684 atomic regions from SNP 167737 to 168337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:21,435 DEBUG Processing 491/654 atomic regions from SNP 147251 to 147851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:21,507 DEBUG Processing 625/775 atomic regions from SNP 187349 to 187949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,544 DEBUG Processing 233/591 atomic regions from SNP 69652 to 70252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:21,586 DEBUG Processing 469/664 atomic regions from SNP 140681 to 141281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:21,647 DEBUG Processing 561/684 atomic regions from SNP 168037 to 168637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:21,651 DEBUG Processing 492/654 atomic regions from SNP 147551 to 148151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:21,731 DEBUG Processing 234/591 atomic regions from SNP 69952 to 70552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:21,738 DEBUG Processing 626/775 atomic regions from SNP 187649 to 188249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,806 DEBUG Processing 470/664 atomic regions from SNP 140981 to 141581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:21,858 DEBUG Processing 562/684 atomic regions from SNP 168337 to 168937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:21,867 DEBUG Processing 493/654 atomic regions from SNP 147851 to 148451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:21,924 DEBUG Processing 235/591 atomic regions from SNP 70252 to 70852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:21,970 DEBUG Processing 627/775 atomic regions from SNP 187949 to 188549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:22,027 DEBUG Processing 471/664 atomic regions from SNP 141281 to 141881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:22,063 DEBUG Processing 563/684 atomic regions from SNP 168637 to 169237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:22,079 DEBUG Processing 494/654 atomic regions from SNP 148151 to 148751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:22,121 DEBUG Processing 236/591 atomic regions from SNP 70552 to 71152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:22,202 DEBUG Processing 628/775 atomic regions from SNP 188249 to 188849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:22,258 DEBUG Processing 472/664 atomic regions from SNP 141581 to 142181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:22,270 DEBUG Processing 564/684 atomic regions from SNP 168937 to 169537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:22,290 DEBUG Processing 495/654 atomic regions from SNP 148451 to 149051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:22,315 DEBUG Processing 237/591 atomic regions from SNP 70852 to 71452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:22,439 DEBUG Processing 629/775 atomic regions from SNP 188549 to 189149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:22,481 DEBUG Processing 565/684 atomic regions from SNP 169237 to 169837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:22,485 DEBUG Processing 473/664 atomic regions from SNP 141881 to 142481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:22,506 DEBUG Processing 496/654 atomic regions from SNP 148751 to 149351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:22,510 DEBUG Processing 238/591 atomic regions from SNP 71152 to 71752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:22,669 DEBUG Processing 630/775 atomic regions from SNP 188849 to 189449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:22,689 DEBUG Processing 566/684 atomic regions from SNP 169537 to 170137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:22,705 DEBUG Processing 474/664 atomic regions from SNP 142181 to 142781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:22,722 DEBUG Processing 497/654 atomic regions from SNP 149051 to 149651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:22,724 DEBUG Processing 239/591 atomic regions from SNP 71452 to 72052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:22,895 DEBUG Processing 567/684 atomic regions from SNP 169837 to 170437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:22,897 DEBUG Processing 631/775 atomic regions from SNP 189149 to 189749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:22,933 DEBUG Processing 475/664 atomic regions from SNP 142481 to 143081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:22,933 DEBUG Processing 498/654 atomic regions from SNP 149351 to 149951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:22,945 DEBUG Processing 240/591 atomic regions from SNP 71752 to 72352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:23,103 DEBUG Processing 568/684 atomic regions from SNP 170137 to 170737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:23,129 DEBUG Processing 632/775 atomic regions from SNP 189449 to 190049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:23,145 DEBUG Processing 476/664 atomic regions from SNP 142781 to 143381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:23,146 DEBUG Processing 499/654 atomic regions from SNP 149651 to 150251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:23,151 DEBUG Processing 241/591 atomic regions from SNP 72052 to 72652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:23,315 DEBUG Processing 569/684 atomic regions from SNP 170437 to 171037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:23,360 DEBUG Processing 242/591 atomic regions from SNP 72352 to 72952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:23,364 DEBUG Processing 500/654 atomic regions from SNP 149951 to 150551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:23,365 DEBUG Processing 477/664 atomic regions from SNP 143081 to 143681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:23,366 DEBUG Processing 633/775 atomic regions from SNP 189749 to 190349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:23,523 DEBUG Processing 570/684 atomic regions from SNP 170737 to 171337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:23,580 DEBUG Processing 243/591 atomic regions from SNP 72652 to 73252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:23,587 DEBUG Processing 501/654 atomic regions from SNP 150251 to 150851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:23,590 DEBUG Processing 478/664 atomic regions from SNP 143381 to 143981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:23,609 DEBUG Processing 634/775 atomic regions from SNP 190049 to 190649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:23,724 DEBUG Processing 571/684 atomic regions from SNP 171037 to 171637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:23,776 DEBUG Processing 244/591 atomic regions from SNP 72952 to 73552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:23,802 DEBUG Processing 502/654 atomic regions from SNP 150551 to 151151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:23,808 DEBUG Processing 479/664 atomic regions from SNP 143681 to 144281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:23,866 DEBUG Processing 635/775 atomic regions from SNP 190349 to 190949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:23,927 DEBUG Processing 572/684 atomic regions from SNP 171337 to 171937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:23,972 DEBUG Processing 245/591 atomic regions from SNP 73252 to 73852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:24,012 DEBUG Processing 503/654 atomic regions from SNP 150851 to 151451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:24,021 DEBUG Processing 480/664 atomic regions from SNP 143981 to 144581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:24,098 DEBUG Processing 636/775 atomic regions from SNP 190649 to 191249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:24,137 DEBUG Processing 573/684 atomic regions from SNP 171637 to 172237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:24,200 DEBUG Processing 246/591 atomic regions from SNP 73552 to 74152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:24,220 DEBUG Processing 504/654 atomic regions from SNP 151151 to 151751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:24,237 DEBUG Processing 481/664 atomic regions from SNP 144281 to 144881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:24,327 DEBUG Processing 637/775 atomic regions from SNP 190949 to 191549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:24,345 DEBUG Processing 574/684 atomic regions from SNP 171937 to 172537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:24,418 DEBUG Processing 247/591 atomic regions from SNP 73852 to 74452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:24,431 DEBUG Processing 505/654 atomic regions from SNP 151451 to 152051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:24,457 DEBUG Processing 482/664 atomic regions from SNP 144581 to 145181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:24,554 DEBUG Processing 575/684 atomic regions from SNP 172237 to 172837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:24,556 DEBUG Processing 638/775 atomic regions from SNP 191249 to 191849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:24,613 DEBUG Processing 248/591 atomic regions from SNP 74152 to 74752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:24,643 DEBUG Processing 506/654 atomic regions from SNP 151751 to 152351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:24,677 DEBUG Processing 483/664 atomic regions from SNP 144881 to 145481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:24,760 DEBUG Processing 576/684 atomic regions from SNP 172537 to 173137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:24,786 DEBUG Processing 639/775 atomic regions from SNP 191549 to 192149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:24,806 DEBUG Processing 249/591 atomic regions from SNP 74452 to 75052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:24,873 DEBUG Processing 507/654 atomic regions from SNP 152051 to 152651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:24,900 DEBUG Processing 484/664 atomic regions from SNP 145181 to 145781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:24,966 DEBUG Processing 577/684 atomic regions from SNP 172837 to 173437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:24,998 DEBUG Processing 250/591 atomic regions from SNP 74752 to 75352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:25,018 DEBUG Processing 640/775 atomic regions from SNP 191849 to 192449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:25,097 DEBUG Processing 508/654 atomic regions from SNP 152351 to 152951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:25,114 DEBUG Processing 485/664 atomic regions from SNP 145481 to 146081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:25,174 DEBUG Processing 578/684 atomic regions from SNP 173137 to 173737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:25,189 DEBUG Processing 251/591 atomic regions from SNP 75052 to 75652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:25,249 DEBUG Processing 641/775 atomic regions from SNP 192149 to 192749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:25,310 DEBUG Processing 509/654 atomic regions from SNP 152651 to 153251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:25,330 DEBUG Processing 486/664 atomic regions from SNP 145781 to 146381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:25,385 DEBUG Processing 579/684 atomic regions from SNP 173437 to 174037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:25,397 DEBUG Processing 252/591 atomic regions from SNP 75352 to 75952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:25,484 DEBUG Processing 642/775 atomic regions from SNP 192449 to 193049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:25,519 DEBUG Processing 510/654 atomic regions from SNP 152951 to 153551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:25,548 DEBUG Processing 487/664 atomic regions from SNP 146081 to 146681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:25,597 DEBUG Processing 253/591 atomic regions from SNP 75652 to 76252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:25,598 DEBUG Processing 580/684 atomic regions from SNP 173737 to 174337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:25,726 DEBUG Processing 511/654 atomic regions from SNP 153251 to 153851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:25,738 DEBUG Processing 643/775 atomic regions from SNP 192749 to 193349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:25,768 DEBUG Processing 488/664 atomic regions from SNP 146381 to 146981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:25,792 DEBUG Processing 254/591 atomic regions from SNP 75952 to 76552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:25,808 DEBUG Processing 581/684 atomic regions from SNP 174037 to 174637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:25,935 DEBUG Processing 512/654 atomic regions from SNP 153551 to 154151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:25,985 DEBUG Processing 489/664 atomic regions from SNP 146681 to 147281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:25,987 DEBUG Processing 255/591 atomic regions from SNP 76252 to 76852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:26,003 DEBUG Processing 644/775 atomic regions from SNP 193049 to 193649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:26,015 DEBUG Processing 582/684 atomic regions from SNP 174337 to 174937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:26,148 DEBUG Processing 513/654 atomic regions from SNP 153851 to 154451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:26,180 DEBUG Processing 256/591 atomic regions from SNP 76552 to 77152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:26,197 DEBUG Processing 490/664 atomic regions from SNP 146981 to 147581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:26,220 DEBUG Processing 583/684 atomic regions from SNP 174637 to 175237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:26,260 DEBUG Processing 645/775 atomic regions from SNP 193349 to 193949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:26,363 DEBUG Processing 514/654 atomic regions from SNP 154151 to 154751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:26,380 DEBUG Processing 257/591 atomic regions from SNP 76852 to 77452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:26,417 DEBUG Processing 491/664 atomic regions from SNP 147281 to 147881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:26,431 DEBUG Processing 584/684 atomic regions from SNP 174937 to 175537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:26,518 DEBUG Processing 646/775 atomic regions from SNP 193649 to 194249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:26,577 DEBUG Processing 258/591 atomic regions from SNP 77152 to 77752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:26,578 DEBUG Processing 515/654 atomic regions from SNP 154451 to 155051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:26,640 DEBUG Processing 492/664 atomic regions from SNP 147581 to 148181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:26,642 DEBUG Processing 585/684 atomic regions from SNP 175237 to 175837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:26,745 DEBUG Processing 647/775 atomic regions from SNP 193949 to 194549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:26,771 DEBUG Processing 259/591 atomic regions from SNP 77452 to 78052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:26,788 DEBUG Processing 516/654 atomic regions from SNP 154751 to 155351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:26,851 DEBUG Processing 586/684 atomic regions from SNP 175537 to 176137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:26,868 DEBUG Processing 493/664 atomic regions from SNP 147881 to 148481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:26,961 DEBUG Processing 260/591 atomic regions from SNP 77752 to 78352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:26,974 DEBUG Processing 648/775 atomic regions from SNP 194249 to 194849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:26,999 DEBUG Processing 517/654 atomic regions from SNP 155051 to 155651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:27,058 DEBUG Processing 587/684 atomic regions from SNP 175837 to 176437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:27,093 DEBUG Processing 494/664 atomic regions from SNP 148181 to 148781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:27,156 DEBUG Processing 261/591 atomic regions from SNP 78052 to 78652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:27,207 DEBUG Processing 649/775 atomic regions from SNP 194549 to 195149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:27,210 DEBUG Processing 518/654 atomic regions from SNP 155351 to 155951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:27,266 DEBUG Processing 588/684 atomic regions from SNP 176137 to 176737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:27,311 DEBUG Processing 495/664 atomic regions from SNP 148481 to 149081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:27,349 DEBUG Processing 262/591 atomic regions from SNP 78352 to 78952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:27,422 DEBUG Processing 519/654 atomic regions from SNP 155651 to 156251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:27,443 DEBUG Processing 650/775 atomic regions from SNP 194849 to 195449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:27,473 DEBUG Processing 589/684 atomic regions from SNP 176437 to 177037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:27,523 DEBUG Processing 496/664 atomic regions from SNP 148781 to 149381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:27,544 DEBUG Processing 263/591 atomic regions from SNP 78652 to 79252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:27,633 DEBUG Processing 520/654 atomic regions from SNP 155951 to 156551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:27,678 DEBUG Processing 651/775 atomic regions from SNP 195149 to 195749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:27,681 DEBUG Processing 590/684 atomic regions from SNP 176737 to 177337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:27,736 DEBUG Processing 497/664 atomic regions from SNP 149081 to 149681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:27,744 DEBUG Processing 264/591 atomic regions from SNP 78952 to 79552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:27,853 DEBUG Processing 521/654 atomic regions from SNP 156251 to 156851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:27,896 DEBUG Processing 591/684 atomic regions from SNP 177037 to 177637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:27,922 DEBUG Processing 652/775 atomic regions from SNP 195449 to 196049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:27,941 DEBUG Processing 265/591 atomic regions from SNP 79252 to 79852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:27,952 DEBUG Processing 498/664 atomic regions from SNP 149381 to 149981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:28,069 DEBUG Processing 522/654 atomic regions from SNP 156551 to 157151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:28,107 DEBUG Processing 592/684 atomic regions from SNP 177337 to 177937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:28,135 DEBUG Processing 266/591 atomic regions from SNP 79552 to 80152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:28,157 DEBUG Processing 653/775 atomic regions from SNP 195749 to 196349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,167 DEBUG Processing 499/664 atomic regions from SNP 149681 to 150281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:28,286 DEBUG Processing 523/654 atomic regions from SNP 156851 to 157451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:28,324 DEBUG Processing 593/684 atomic regions from SNP 177637 to 178237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:28,339 DEBUG Processing 267/591 atomic regions from SNP 79852 to 80452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:28,386 DEBUG Processing 500/664 atomic regions from SNP 149981 to 150581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:28,397 DEBUG Processing 654/775 atomic regions from SNP 196049 to 196649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,499 DEBUG Processing 524/654 atomic regions from SNP 157151 to 157751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:28,540 DEBUG Processing 594/684 atomic regions from SNP 177937 to 178537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:28,542 DEBUG Processing 268/591 atomic regions from SNP 80152 to 80752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:28,604 DEBUG Processing 501/664 atomic regions from SNP 150281 to 150881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:28,636 DEBUG Processing 655/775 atomic regions from SNP 196349 to 196949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,707 DEBUG Processing 525/654 atomic regions from SNP 157451 to 158051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:28,736 DEBUG Processing 269/591 atomic regions from SNP 80452 to 81052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:28,748 DEBUG Processing 595/684 atomic regions from SNP 178237 to 178837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:28,817 DEBUG Processing 502/664 atomic regions from SNP 150581 to 151181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:28,871 DEBUG Processing 656/775 atomic regions from SNP 196649 to 197249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,927 DEBUG Processing 526/654 atomic regions from SNP 157751 to 158351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:28,933 DEBUG Processing 270/591 atomic regions from SNP 80752 to 81352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:28,956 DEBUG Processing 596/684 atomic regions from SNP 178537 to 179137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:29,029 DEBUG Processing 503/664 atomic regions from SNP 150881 to 151481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:29,097 DEBUG Processing 657/775 atomic regions from SNP 196949 to 197549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:29,144 DEBUG Processing 271/591 atomic regions from SNP 81052 to 81652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:29,155 DEBUG Processing 527/654 atomic regions from SNP 158051 to 158651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:29,177 DEBUG Processing 597/684 atomic regions from SNP 178837 to 179437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:29,244 DEBUG Processing 504/664 atomic regions from SNP 151181 to 151781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:29,326 DEBUG Processing 658/775 atomic regions from SNP 197249 to 197849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:29,346 DEBUG Processing 272/591 atomic regions from SNP 81352 to 81952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:29,377 DEBUG Processing 528/654 atomic regions from SNP 158351 to 158951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:29,395 DEBUG Processing 598/684 atomic regions from SNP 179137 to 179737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:29,468 DEBUG Processing 505/664 atomic regions from SNP 151481 to 152081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:29,542 DEBUG Processing 273/591 atomic regions from SNP 81652 to 82252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:29,558 DEBUG Processing 659/775 atomic regions from SNP 197549 to 198149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:29,593 DEBUG Processing 529/654 atomic regions from SNP 158651 to 159251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:29,608 DEBUG Processing 599/684 atomic regions from SNP 179437 to 180037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:29,685 DEBUG Processing 506/664 atomic regions from SNP 151781 to 152381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:29,742 DEBUG Processing 274/591 atomic regions from SNP 81952 to 82552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:29,796 DEBUG Processing 660/775 atomic regions from SNP 197849 to 198449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:29,809 DEBUG Processing 530/654 atomic regions from SNP 158951 to 159551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:29,843 DEBUG Processing 600/684 atomic regions from SNP 179737 to 180337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:29,896 DEBUG Processing 507/664 atomic regions from SNP 152081 to 152681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:29,937 DEBUG Processing 275/591 atomic regions from SNP 82252 to 82852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:30,028 DEBUG Processing 531/654 atomic regions from SNP 159251 to 159851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:30,032 DEBUG Processing 661/775 atomic regions from SNP 198149 to 198749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:30,074 DEBUG Processing 601/684 atomic regions from SNP 180037 to 180637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:30,108 DEBUG Processing 508/664 atomic regions from SNP 152381 to 152981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:30,133 DEBUG Processing 276/591 atomic regions from SNP 82552 to 83152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:30,242 DEBUG Processing 532/654 atomic regions from SNP 159551 to 160151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:30,271 DEBUG Processing 662/775 atomic regions from SNP 198449 to 199049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:30,290 DEBUG Processing 602/684 atomic regions from SNP 180337 to 180937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:30,329 DEBUG Processing 509/664 atomic regions from SNP 152681 to 153281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:30,334 DEBUG Processing 277/591 atomic regions from SNP 82852 to 83452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:30,453 DEBUG Processing 533/654 atomic regions from SNP 159851 to 160451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:30,502 DEBUG Processing 603/684 atomic regions from SNP 180637 to 181237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:30,510 DEBUG Processing 663/775 atomic regions from SNP 198749 to 199349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:30,535 DEBUG Processing 278/591 atomic regions from SNP 83152 to 83752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:30,555 DEBUG Processing 510/664 atomic regions from SNP 152981 to 153581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:30,669 DEBUG Processing 534/654 atomic regions from SNP 160151 to 160751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:30,714 DEBUG Processing 604/684 atomic regions from SNP 180937 to 181537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:30,736 DEBUG Processing 279/591 atomic regions from SNP 83452 to 84052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:30,747 DEBUG Processing 664/775 atomic regions from SNP 199049 to 199649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:30,781 DEBUG Processing 511/664 atomic regions from SNP 153281 to 153881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:30,882 DEBUG Processing 535/654 atomic regions from SNP 160451 to 161051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:30,924 DEBUG Processing 605/684 atomic regions from SNP 181237 to 181837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:30,935 DEBUG Processing 280/591 atomic regions from SNP 83752 to 84352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:30,978 DEBUG Processing 665/775 atomic regions from SNP 199349 to 199949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:31,001 DEBUG Processing 512/664 atomic regions from SNP 153581 to 154181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:31,101 DEBUG Processing 536/654 atomic regions from SNP 160751 to 161351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:31,126 DEBUG Processing 281/591 atomic regions from SNP 84052 to 84652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:31,132 DEBUG Processing 606/684 atomic regions from SNP 181537 to 182137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:31,208 DEBUG Processing 513/664 atomic regions from SNP 153881 to 154481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:31,223 DEBUG Processing 666/775 atomic regions from SNP 199649 to 200249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:31,326 DEBUG Processing 537/654 atomic regions from SNP 161051 to 161651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:31,337 DEBUG Processing 282/591 atomic regions from SNP 84352 to 84952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:31,351 DEBUG Processing 607/684 atomic regions from SNP 181837 to 182437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:31,420 DEBUG Processing 514/664 atomic regions from SNP 154181 to 154781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:31,450 DEBUG Processing 667/775 atomic regions from SNP 199949 to 200549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:31,546 DEBUG Processing 283/591 atomic regions from SNP 84652 to 85252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:31,550 DEBUG Processing 538/654 atomic regions from SNP 161351 to 161951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:31,572 DEBUG Processing 608/684 atomic regions from SNP 182137 to 182737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:31,645 DEBUG Processing 515/664 atomic regions from SNP 154481 to 155081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:31,681 DEBUG Processing 668/775 atomic regions from SNP 200249 to 200849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:31,746 DEBUG Processing 284/591 atomic regions from SNP 84952 to 85552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:31,767 DEBUG Processing 539/654 atomic regions from SNP 161651 to 162251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:31,789 DEBUG Processing 609/684 atomic regions from SNP 182437 to 183037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:31,872 DEBUG Processing 516/664 atomic regions from SNP 154781 to 155381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:31,921 DEBUG Processing 669/775 atomic regions from SNP 200549 to 201149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:31,942 DEBUG Processing 285/591 atomic regions from SNP 85252 to 85852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:31,984 DEBUG Processing 540/654 atomic regions from SNP 161951 to 162551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:32,000 DEBUG Processing 610/684 atomic regions from SNP 182737 to 183337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:32,097 DEBUG Processing 517/664 atomic regions from SNP 155081 to 155681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:32,142 DEBUG Processing 286/591 atomic regions from SNP 85552 to 86152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:32,158 DEBUG Processing 670/775 atomic regions from SNP 200849 to 201449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:32,213 DEBUG Processing 611/684 atomic regions from SNP 183037 to 183637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:32,221 DEBUG Processing 541/654 atomic regions from SNP 162251 to 162851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:32,321 DEBUG Processing 518/664 atomic regions from SNP 155381 to 155981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:32,340 DEBUG Processing 287/591 atomic regions from SNP 85852 to 86452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:32,395 DEBUG Processing 671/775 atomic regions from SNP 201149 to 201749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:32,425 DEBUG Processing 612/684 atomic regions from SNP 183337 to 183937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:32,463 DEBUG Processing 542/654 atomic regions from SNP 162551 to 163151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:32,540 DEBUG Processing 288/591 atomic regions from SNP 86152 to 86752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:32,547 DEBUG Processing 519/664 atomic regions from SNP 155681 to 156281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:32,631 DEBUG Processing 672/775 atomic regions from SNP 201449 to 202049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:32,640 DEBUG Processing 613/684 atomic regions from SNP 183637 to 184237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:32,704 DEBUG Processing 543/654 atomic regions from SNP 162851 to 163451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:32,752 DEBUG Processing 289/591 atomic regions from SNP 86452 to 87052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:32,769 DEBUG Processing 520/664 atomic regions from SNP 155981 to 156581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:32,859 DEBUG Processing 614/684 atomic regions from SNP 183937 to 184537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:32,872 DEBUG Processing 673/775 atomic regions from SNP 201749 to 202349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:32,948 DEBUG Processing 544/654 atomic regions from SNP 163151 to 163751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:32,955 DEBUG Processing 290/591 atomic regions from SNP 86752 to 87352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:32,991 DEBUG Processing 521/664 atomic regions from SNP 156281 to 156881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:33,082 DEBUG Processing 615/684 atomic regions from SNP 184237 to 184837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:33,111 DEBUG Processing 674/775 atomic regions from SNP 202049 to 202649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:33,154 DEBUG Processing 291/591 atomic regions from SNP 87052 to 87652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:33,196 DEBUG Processing 545/654 atomic regions from SNP 163451 to 164051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:33,216 DEBUG Processing 522/664 atomic regions from SNP 156581 to 157181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:33,298 DEBUG Processing 616/684 atomic regions from SNP 184537 to 185137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:33,353 DEBUG Processing 675/775 atomic regions from SNP 202349 to 202949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:33,358 DEBUG Processing 292/591 atomic regions from SNP 87352 to 87952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:33,448 DEBUG Processing 546/654 atomic regions from SNP 163751 to 164351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:33,457 DEBUG Processing 523/664 atomic regions from SNP 156881 to 157481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:33,509 DEBUG Processing 617/684 atomic regions from SNP 184837 to 185437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:33,561 DEBUG Processing 293/591 atomic regions from SNP 87652 to 88252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:33,585 DEBUG Processing 676/775 atomic regions from SNP 202649 to 203249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:33,698 DEBUG Processing 524/664 atomic regions from SNP 157181 to 157781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:33,703 DEBUG Processing 547/654 atomic regions from SNP 164051 to 164651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:33,731 DEBUG Processing 618/684 atomic regions from SNP 185137 to 185737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:33,763 DEBUG Processing 294/591 atomic regions from SNP 87952 to 88552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:33,814 DEBUG Processing 677/775 atomic regions from SNP 202949 to 203549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:33,948 DEBUG Processing 525/664 atomic regions from SNP 157481 to 158081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:33,957 DEBUG Processing 548/654 atomic regions from SNP 164351 to 164951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:33,958 DEBUG Processing 619/684 atomic regions from SNP 185437 to 186037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:33,976 DEBUG Processing 295/591 atomic regions from SNP 88252 to 88852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:34,049 DEBUG Processing 678/775 atomic regions from SNP 203249 to 203849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:34,180 DEBUG Processing 526/664 atomic regions from SNP 157781 to 158381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:34,180 DEBUG Processing 620/684 atomic regions from SNP 185737 to 186337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:34,191 DEBUG Processing 296/591 atomic regions from SNP 88552 to 89152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:34,205 DEBUG Processing 549/654 atomic regions from SNP 164651 to 165251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:34,293 DEBUG Processing 679/775 atomic regions from SNP 203549 to 204149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:34,388 DEBUG Processing 297/591 atomic regions from SNP 88852 to 89452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:34,394 DEBUG Processing 621/684 atomic regions from SNP 186037 to 186637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:34,403 DEBUG Processing 527/664 atomic regions from SNP 158081 to 158681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:34,458 DEBUG Processing 550/654 atomic regions from SNP 164951 to 165551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:34,541 DEBUG Processing 680/775 atomic regions from SNP 203849 to 204449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:34,588 DEBUG Processing 298/591 atomic regions from SNP 89152 to 89752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:34,608 DEBUG Processing 622/684 atomic regions from SNP 186337 to 186937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:34,611 DEBUG Processing 528/664 atomic regions from SNP 158381 to 158981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:34,689 DEBUG Processing 551/654 atomic regions from SNP 165251 to 165851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:34,787 DEBUG Processing 681/775 atomic regions from SNP 204149 to 204749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:34,800 DEBUG Processing 299/591 atomic regions from SNP 89452 to 90052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:34,829 DEBUG Processing 529/664 atomic regions from SNP 158681 to 159281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:34,834 DEBUG Processing 623/684 atomic regions from SNP 186637 to 187237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:34,906 DEBUG Processing 552/654 atomic regions from SNP 165551 to 166151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:35,004 DEBUG Processing 300/591 atomic regions from SNP 89752 to 90352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:35,030 DEBUG Processing 682/775 atomic regions from SNP 204449 to 205049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:35,054 DEBUG Processing 530/664 atomic regions from SNP 158981 to 159581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:35,056 DEBUG Processing 624/684 atomic regions from SNP 186937 to 187537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:35,131 DEBUG Processing 553/654 atomic regions from SNP 165851 to 166451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:35,204 DEBUG Processing 301/591 atomic regions from SNP 90052 to 90652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:35,274 DEBUG Processing 625/684 atomic regions from SNP 187237 to 187837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:35,276 DEBUG Processing 683/775 atomic regions from SNP 204749 to 205349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:35,279 DEBUG Processing 531/664 atomic regions from SNP 159281 to 159881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:35,354 DEBUG Processing 554/654 atomic regions from SNP 166151 to 166751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:35,408 DEBUG Processing 302/591 atomic regions from SNP 90352 to 90952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:35,494 DEBUG Processing 626/684 atomic regions from SNP 187537 to 188137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:35,506 DEBUG Processing 532/664 atomic regions from SNP 159581 to 160181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:35,521 DEBUG Processing 684/775 atomic regions from SNP 205049 to 205649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:35,576 DEBUG Processing 555/654 atomic regions from SNP 166451 to 167051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:35,603 DEBUG Processing 303/591 atomic regions from SNP 90652 to 91252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:35,718 DEBUG Processing 627/684 atomic regions from SNP 187837 to 188437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:35,736 DEBUG Processing 533/664 atomic regions from SNP 159881 to 160481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:35,764 DEBUG Processing 685/775 atomic regions from SNP 205349 to 205949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:35,804 DEBUG Processing 556/654 atomic regions from SNP 166751 to 167351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:35,817 DEBUG Processing 304/591 atomic regions from SNP 90952 to 91552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:35,934 DEBUG Processing 628/684 atomic regions from SNP 188137 to 188737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:35,962 DEBUG Processing 534/664 atomic regions from SNP 160181 to 160781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:36,007 DEBUG Processing 686/775 atomic regions from SNP 205649 to 206249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:36,035 DEBUG Processing 557/654 atomic regions from SNP 167051 to 167651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:36,042 DEBUG Processing 305/591 atomic regions from SNP 91252 to 91852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:36,145 DEBUG Processing 629/684 atomic regions from SNP 188437 to 189037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:36,182 DEBUG Processing 535/664 atomic regions from SNP 160481 to 161081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:36,248 DEBUG Processing 687/775 atomic regions from SNP 205949 to 206549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:36,252 DEBUG Processing 306/591 atomic regions from SNP 91552 to 92152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:36,263 DEBUG Processing 558/654 atomic regions from SNP 167351 to 167951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:36,361 DEBUG Processing 630/684 atomic regions from SNP 188737 to 189337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:36,400 DEBUG Processing 536/664 atomic regions from SNP 160781 to 161381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:36,456 DEBUG Processing 307/591 atomic regions from SNP 91852 to 92452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:36,487 DEBUG Processing 559/654 atomic regions from SNP 167651 to 168251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:36,489 DEBUG Processing 688/775 atomic regions from SNP 206249 to 206849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:36,579 DEBUG Processing 631/684 atomic regions from SNP 189037 to 189637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:36,616 DEBUG Processing 537/664 atomic regions from SNP 161081 to 161681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:36,659 DEBUG Processing 308/591 atomic regions from SNP 92152 to 92752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:36,707 DEBUG Processing 560/654 atomic regions from SNP 167951 to 168551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:36,730 DEBUG Processing 689/775 atomic regions from SNP 206549 to 207149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:36,801 DEBUG Processing 632/684 atomic regions from SNP 189337 to 189937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:36,827 DEBUG Processing 538/664 atomic regions from SNP 161381 to 161981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:36,861 DEBUG Processing 309/591 atomic regions from SNP 92452 to 93052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:36,925 DEBUG Processing 561/654 atomic regions from SNP 168251 to 168851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:36,972 DEBUG Processing 690/775 atomic regions from SNP 206849 to 207449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,025 DEBUG Processing 633/684 atomic regions from SNP 189637 to 190237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:37,042 DEBUG Processing 539/664 atomic regions from SNP 161681 to 162281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:37,064 DEBUG Processing 310/591 atomic regions from SNP 92752 to 93352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:37,139 DEBUG Processing 562/654 atomic regions from SNP 168551 to 169151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:37,215 DEBUG Processing 691/775 atomic regions from SNP 207149 to 207749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,248 DEBUG Processing 634/684 atomic regions from SNP 189937 to 190537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:37,266 DEBUG Processing 540/664 atomic regions from SNP 161981 to 162581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:37,275 DEBUG Processing 311/591 atomic regions from SNP 93052 to 93652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:37,358 DEBUG Processing 563/654 atomic regions from SNP 168851 to 169451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:37,444 DEBUG Segmenting atomic regions: 2025-01-31 09:45:37,453 DEBUG Processing 692/775 atomic regions from SNP 207449 to 208049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,475 DEBUG Processing 635/684 atomic regions from SNP 190237 to 190837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:37,488 DEBUG Processing 312/591 atomic regions from SNP 93352 to 93952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:37,498 DEBUG Processing 541/664 atomic regions from SNP 162281 to 162881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:37,536 DEBUG Processing 1/680 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:37,585 DEBUG Processing 564/654 atomic regions from SNP 169151 to 169751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:37,694 DEBUG Processing 693/775 atomic regions from SNP 207749 to 208349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,700 DEBUG Processing 313/591 atomic regions from SNP 93652 to 94252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:37,701 DEBUG Processing 636/684 atomic regions from SNP 190537 to 191137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:37,731 DEBUG Processing 542/664 atomic regions from SNP 162581 to 163181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:37,768 DEBUG Processing 2/680 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:37,810 DEBUG Processing 565/654 atomic regions from SNP 169451 to 170051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:37,922 DEBUG Processing 314/591 atomic regions from SNP 93952 to 94552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:37,935 DEBUG Processing 637/684 atomic regions from SNP 190837 to 191437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:37,946 DEBUG Processing 694/775 atomic regions from SNP 208049 to 208649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,965 DEBUG Processing 543/664 atomic regions from SNP 162881 to 163481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:38,004 DEBUG Processing 3/680 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:38,037 DEBUG Processing 566/654 atomic regions from SNP 169751 to 170351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:38,131 DEBUG Processing 315/591 atomic regions from SNP 94252 to 94852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:38,160 DEBUG Processing 638/684 atomic regions from SNP 191137 to 191737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:38,195 DEBUG Processing 544/664 atomic regions from SNP 163181 to 163781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:38,207 DEBUG Processing 695/775 atomic regions from SNP 208349 to 208949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:38,238 DEBUG Processing 4/680 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:38,268 DEBUG Processing 567/654 atomic regions from SNP 170051 to 170651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:38,335 DEBUG Processing 316/591 atomic regions from SNP 94552 to 95152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:38,382 DEBUG Processing 639/684 atomic regions from SNP 191437 to 192037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:38,421 DEBUG Processing 545/664 atomic regions from SNP 163481 to 164081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:38,453 DEBUG Processing 696/775 atomic regions from SNP 208649 to 209249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:38,474 DEBUG Processing 5/680 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:38,502 DEBUG Processing 568/654 atomic regions from SNP 170351 to 170951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:38,549 DEBUG Processing 317/591 atomic regions from SNP 94852 to 95452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:38,605 DEBUG Processing 640/684 atomic regions from SNP 191737 to 192337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:38,643 DEBUG Processing 546/664 atomic regions from SNP 163781 to 164381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:38,697 DEBUG Processing 697/775 atomic regions from SNP 208949 to 209549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:38,698 DEBUG Processing 6/680 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:38,728 DEBUG Processing 569/654 atomic regions from SNP 170651 to 171251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:38,767 DEBUG Processing 318/591 atomic regions from SNP 95152 to 95752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:38,835 DEBUG Processing 641/684 atomic regions from SNP 192037 to 192637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:38,867 DEBUG Processing 547/664 atomic regions from SNP 164081 to 164681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:38,918 DEBUG Processing 7/680 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:38,932 DEBUG Processing 698/775 atomic regions from SNP 209249 to 209849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:38,947 DEBUG Processing 570/654 atomic regions from SNP 170951 to 171551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:38,970 DEBUG Processing 319/591 atomic regions from SNP 95452 to 96052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:39,065 DEBUG Processing 642/684 atomic regions from SNP 192337 to 192937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:39,100 DEBUG Processing 548/664 atomic regions from SNP 164381 to 164981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:39,144 DEBUG Processing 8/680 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:39,171 DEBUG Processing 699/775 atomic regions from SNP 209549 to 210149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,178 DEBUG Processing 571/654 atomic regions from SNP 171251 to 171851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:39,179 DEBUG Processing 320/591 atomic regions from SNP 95752 to 96352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:39,281 DEBUG Processing 643/684 atomic regions from SNP 192637 to 193237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:39,328 DEBUG Processing 549/664 atomic regions from SNP 164681 to 165281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:39,377 DEBUG Processing 9/680 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:39,395 DEBUG Processing 321/591 atomic regions from SNP 96052 to 96652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:39,411 DEBUG Processing 572/654 atomic regions from SNP 171551 to 172151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:39,416 DEBUG Processing 700/775 atomic regions from SNP 209849 to 210449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,497 DEBUG Processing 644/684 atomic regions from SNP 192937 to 193537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:39,557 DEBUG Processing 550/664 atomic regions from SNP 164981 to 165581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:39,600 DEBUG Processing 322/591 atomic regions from SNP 96352 to 96952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:39,609 DEBUG Processing 10/680 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:39,641 DEBUG Processing 573/654 atomic regions from SNP 171851 to 172451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:39,662 DEBUG Processing 701/775 atomic regions from SNP 210149 to 210749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,728 DEBUG Processing 645/684 atomic regions from SNP 193237 to 193837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:39,779 DEBUG Processing 551/664 atomic regions from SNP 165281 to 165881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:39,798 DEBUG Processing 323/591 atomic regions from SNP 96652 to 97252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:39,835 DEBUG Processing 11/680 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:39,857 DEBUG Processing 574/654 atomic regions from SNP 172151 to 172751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:39,907 DEBUG Processing 702/775 atomic regions from SNP 210449 to 211049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,961 DEBUG Processing 646/684 atomic regions from SNP 193537 to 194137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:40,016 DEBUG Processing 552/664 atomic regions from SNP 165581 to 166181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:40,017 DEBUG Processing 324/591 atomic regions from SNP 96952 to 97552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:40,068 DEBUG Processing 12/680 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:40,079 DEBUG Processing 575/654 atomic regions from SNP 172451 to 173051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:40,150 DEBUG Processing 703/775 atomic regions from SNP 210749 to 211349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,180 DEBUG Processing 647/684 atomic regions from SNP 193837 to 194437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:40,236 DEBUG Processing 325/591 atomic regions from SNP 97252 to 97852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:40,246 DEBUG Processing 553/664 atomic regions from SNP 165881 to 166481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:40,304 DEBUG Processing 13/680 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:40,318 DEBUG Processing 576/654 atomic regions from SNP 172751 to 173351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:40,394 DEBUG Processing 648/684 atomic regions from SNP 194137 to 194737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:40,395 DEBUG Processing 704/775 atomic regions from SNP 211049 to 211649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,436 DEBUG Processing 326/591 atomic regions from SNP 97552 to 98152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:40,471 DEBUG Processing 554/664 atomic regions from SNP 166181 to 166781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:40,533 DEBUG Processing 14/680 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:40,552 DEBUG Processing 577/654 atomic regions from SNP 173051 to 173651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:40,628 DEBUG Processing 649/684 atomic regions from SNP 194437 to 195037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:40,644 DEBUG Processing 327/591 atomic regions from SNP 97852 to 98452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:40,652 DEBUG Processing 705/775 atomic regions from SNP 211349 to 211949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,701 DEBUG Processing 555/664 atomic regions from SNP 166481 to 167081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:40,753 DEBUG Processing 15/680 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:40,773 DEBUG Processing 578/654 atomic regions from SNP 173351 to 173951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:40,863 DEBUG Processing 650/684 atomic regions from SNP 194737 to 195337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:40,865 DEBUG Processing 328/591 atomic regions from SNP 98152 to 98752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:40,903 DEBUG Processing 706/775 atomic regions from SNP 211649 to 212249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,937 DEBUG Processing 556/664 atomic regions from SNP 166781 to 167381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:40,982 DEBUG Processing 16/680 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:40,991 DEBUG Processing 579/654 atomic regions from SNP 173651 to 174251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:41,079 DEBUG Processing 329/591 atomic regions from SNP 98452 to 99052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:41,092 DEBUG Processing 651/684 atomic regions from SNP 195037 to 195637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:41,148 DEBUG Processing 707/775 atomic regions from SNP 211949 to 212549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,177 DEBUG Processing 557/664 atomic regions from SNP 167081 to 167681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:41,220 DEBUG Processing 17/680 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:41,221 DEBUG Processing 580/654 atomic regions from SNP 173951 to 174551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:41,287 DEBUG Processing 330/591 atomic regions from SNP 98752 to 99352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:41,312 DEBUG Processing 652/684 atomic regions from SNP 195337 to 195937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:41,388 DEBUG Processing 708/775 atomic regions from SNP 212249 to 212849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,406 DEBUG Processing 558/664 atomic regions from SNP 167381 to 167981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:41,452 DEBUG Processing 581/654 atomic regions from SNP 174251 to 174851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:41,452 DEBUG Processing 18/680 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:41,501 DEBUG Processing 331/591 atomic regions from SNP 99052 to 99652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:41,538 DEBUG Processing 653/684 atomic regions from SNP 195637 to 196237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:41,627 DEBUG Processing 709/775 atomic regions from SNP 212549 to 213149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,627 DEBUG Processing 559/664 atomic regions from SNP 167681 to 168281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:41,671 DEBUG Processing 19/680 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:41,681 DEBUG Processing 582/654 atomic regions from SNP 174551 to 175151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:41,715 DEBUG Processing 332/591 atomic regions from SNP 99352 to 99952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:41,765 DEBUG Processing 654/684 atomic regions from SNP 195937 to 196537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:41,861 DEBUG Processing 560/664 atomic regions from SNP 167981 to 168581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:41,874 DEBUG Processing 710/775 atomic regions from SNP 212849 to 213449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,898 DEBUG Processing 20/680 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:41,907 DEBUG Processing 583/654 atomic regions from SNP 174851 to 175451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:41,933 DEBUG Processing 333/591 atomic regions from SNP 99652 to 100252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:41,990 DEBUG Processing 655/684 atomic regions from SNP 196237 to 196837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:42,098 DEBUG Processing 561/664 atomic regions from SNP 168281 to 168881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:42,125 DEBUG Processing 711/775 atomic regions from SNP 213149 to 213749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,129 DEBUG Processing 21/680 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:42,136 DEBUG Processing 584/654 atomic regions from SNP 175151 to 175751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:42,147 DEBUG Processing 334/591 atomic regions from SNP 99952 to 100552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:42,211 DEBUG Processing 656/684 atomic regions from SNP 196537 to 197137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:42,356 DEBUG Processing 335/591 atomic regions from SNP 100252 to 100852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:42,360 DEBUG Processing 562/664 atomic regions from SNP 168581 to 169181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:42,362 DEBUG Processing 585/654 atomic regions from SNP 175451 to 176051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:42,366 DEBUG Processing 22/680 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:42,376 DEBUG Processing 712/775 atomic regions from SNP 213449 to 214049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,430 DEBUG Processing 657/684 atomic regions from SNP 196837 to 197437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:42,572 DEBUG Processing 336/591 atomic regions from SNP 100552 to 101152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:42,596 DEBUG Processing 586/654 atomic regions from SNP 175751 to 176351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:42,597 DEBUG Processing 563/664 atomic regions from SNP 168881 to 169481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:42,604 DEBUG Processing 23/680 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:42,632 DEBUG Processing 713/775 atomic regions from SNP 213749 to 214349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,648 DEBUG Processing 658/684 atomic regions from SNP 197137 to 197737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:42,787 DEBUG Processing 337/591 atomic regions from SNP 100852 to 101452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:42,830 DEBUG Processing 587/654 atomic regions from SNP 176051 to 176651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:42,837 DEBUG Processing 564/664 atomic regions from SNP 169181 to 169781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:42,843 DEBUG Processing 24/680 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:42,869 DEBUG Processing 659/684 atomic regions from SNP 197437 to 198037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:42,883 DEBUG Processing 714/775 atomic regions from SNP 214049 to 214649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,998 DEBUG Processing 338/591 atomic regions from SNP 101152 to 101752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:43,066 DEBUG Processing 588/654 atomic regions from SNP 176351 to 176951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:43,078 DEBUG Processing 565/664 atomic regions from SNP 169481 to 170081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:43,083 DEBUG Processing 25/680 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:43,099 DEBUG Processing 660/684 atomic regions from SNP 197737 to 198337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:43,138 DEBUG Processing 715/775 atomic regions from SNP 214349 to 214949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,206 DEBUG Processing 339/591 atomic regions from SNP 101452 to 102052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:43,296 DEBUG Processing 589/654 atomic regions from SNP 176651 to 177251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:43,308 DEBUG Processing 566/664 atomic regions from SNP 169781 to 170381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:43,314 DEBUG Processing 26/680 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:43,324 DEBUG Processing 661/684 atomic regions from SNP 198037 to 198637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:43,394 DEBUG Processing 716/775 atomic regions from SNP 214649 to 215249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,422 DEBUG Processing 340/591 atomic regions from SNP 101752 to 102352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:43,524 DEBUG Processing 590/654 atomic regions from SNP 176951 to 177551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:43,532 DEBUG Processing 567/664 atomic regions from SNP 170081 to 170681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:43,540 DEBUG Processing 27/680 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:43,548 DEBUG Processing 662/684 atomic regions from SNP 198337 to 198937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:43,636 DEBUG Processing 341/591 atomic regions from SNP 102052 to 102652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:43,650 DEBUG Processing 717/775 atomic regions from SNP 214949 to 215549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,757 DEBUG Processing 591/654 atomic regions from SNP 177251 to 177851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:43,762 DEBUG Processing 568/664 atomic regions from SNP 170381 to 170981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:43,770 DEBUG Processing 28/680 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:43,773 DEBUG Processing 663/684 atomic regions from SNP 198637 to 199237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:43,843 DEBUG Processing 342/591 atomic regions from SNP 102352 to 102952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:43,897 DEBUG Processing 718/775 atomic regions from SNP 215249 to 215849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,986 DEBUG Processing 592/654 atomic regions from SNP 177551 to 178151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:43,996 DEBUG Processing 569/664 atomic regions from SNP 170681 to 171281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:43,997 DEBUG Processing 664/684 atomic regions from SNP 198937 to 199537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:44,002 DEBUG Processing 29/680 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:44,051 DEBUG Processing 343/591 atomic regions from SNP 102652 to 103252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:44,141 DEBUG Processing 719/775 atomic regions from SNP 215549 to 216149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,214 DEBUG Processing 593/654 atomic regions from SNP 177851 to 178451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:44,222 DEBUG Processing 665/684 atomic regions from SNP 199237 to 199837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:44,233 DEBUG Processing 570/664 atomic regions from SNP 170981 to 171581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:44,235 DEBUG Processing 30/680 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:44,264 DEBUG Processing 344/591 atomic regions from SNP 102952 to 103552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:44,388 DEBUG Processing 720/775 atomic regions from SNP 215849 to 216449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,443 DEBUG Processing 594/654 atomic regions from SNP 178151 to 178751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:44,462 DEBUG Processing 666/684 atomic regions from SNP 199537 to 200137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:44,462 DEBUG Processing 31/680 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:44,463 DEBUG Processing 571/664 atomic regions from SNP 171281 to 171881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:44,472 DEBUG Processing 345/591 atomic regions from SNP 103252 to 103852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:44,641 DEBUG Processing 721/775 atomic regions from SNP 216149 to 216749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,676 DEBUG Processing 595/654 atomic regions from SNP 178451 to 179051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:44,685 DEBUG Processing 346/591 atomic regions from SNP 103552 to 104152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:44,695 DEBUG Processing 572/664 atomic regions from SNP 171581 to 172181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:44,696 DEBUG Processing 32/680 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:44,714 DEBUG Processing 667/684 atomic regions from SNP 199837 to 200437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:44,894 DEBUG Processing 722/775 atomic regions from SNP 216449 to 217049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,898 DEBUG Processing 347/591 atomic regions from SNP 103852 to 104452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:44,907 DEBUG Processing 596/654 atomic regions from SNP 178751 to 179351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:44,928 DEBUG Processing 573/664 atomic regions from SNP 171881 to 172481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:44,932 DEBUG Processing 33/680 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:44,975 DEBUG Processing 668/684 atomic regions from SNP 200137 to 200737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:45,096 DEBUG Processing 348/591 atomic regions from SNP 104152 to 104752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:45,126 DEBUG Processing 597/654 atomic regions from SNP 179051 to 179651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:45,143 DEBUG Processing 723/775 atomic regions from SNP 216749 to 217349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,163 DEBUG Processing 574/664 atomic regions from SNP 172181 to 172781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:45,168 DEBUG Processing 34/680 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:45,220 DEBUG Processing 669/684 atomic regions from SNP 200437 to 201037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:45,303 DEBUG Processing 349/591 atomic regions from SNP 104452 to 105052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:45,347 DEBUG Processing 598/654 atomic regions from SNP 179351 to 179951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:45,387 DEBUG Processing 724/775 atomic regions from SNP 217049 to 217649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,392 DEBUG Processing 575/664 atomic regions from SNP 172481 to 173081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:45,395 DEBUG Processing 35/680 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:45,448 DEBUG Processing 670/684 atomic regions from SNP 200737 to 201337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:45,519 DEBUG Processing 350/591 atomic regions from SNP 104752 to 105352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:45,579 DEBUG Processing 599/654 atomic regions from SNP 179651 to 180251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:45,620 DEBUG Processing 576/664 atomic regions from SNP 172781 to 173381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:45,626 DEBUG Processing 36/680 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:45,637 DEBUG Processing 725/775 atomic regions from SNP 217349 to 217949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,664 DEBUG Processing 671/684 atomic regions from SNP 201037 to 201637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:45,723 DEBUG Processing 351/591 atomic regions from SNP 105052 to 105652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:45,808 DEBUG Processing 600/654 atomic regions from SNP 179951 to 180551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:45,855 DEBUG Processing 577/664 atomic regions from SNP 173081 to 173681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:45,859 DEBUG Processing 37/680 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:45,885 DEBUG Processing 726/775 atomic regions from SNP 217649 to 218249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,892 DEBUG Processing 672/684 atomic regions from SNP 201337 to 201937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:45,931 DEBUG Processing 352/591 atomic regions from SNP 105352 to 105952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:46,028 DEBUG Processing 601/654 atomic regions from SNP 180251 to 180851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:46,092 DEBUG Processing 578/664 atomic regions from SNP 173381 to 173981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:46,093 DEBUG Processing 38/680 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:46,134 DEBUG Processing 727/775 atomic regions from SNP 217949 to 218549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,143 DEBUG Processing 673/684 atomic regions from SNP 201637 to 202237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:46,150 DEBUG Processing 353/591 atomic regions from SNP 105652 to 106252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:46,248 DEBUG Processing 602/654 atomic regions from SNP 180551 to 181151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:46,323 DEBUG Processing 579/664 atomic regions from SNP 173681 to 174281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:46,327 DEBUG Processing 39/680 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:46,363 DEBUG Processing 354/591 atomic regions from SNP 105952 to 106552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:46,382 DEBUG Processing 674/684 atomic regions from SNP 201937 to 202537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:46,391 DEBUG Processing 728/775 atomic regions from SNP 218249 to 218849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,481 DEBUG Processing 603/654 atomic regions from SNP 180851 to 181451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:46,550 DEBUG Processing 580/664 atomic regions from SNP 173981 to 174581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:46,559 DEBUG Processing 40/680 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:46,563 DEBUG Processing 355/591 atomic regions from SNP 106252 to 106852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:46,628 DEBUG Processing 675/684 atomic regions from SNP 202237 to 202837 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:46,644 DEBUG Processing 729/775 atomic regions from SNP 218549 to 219149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,717 DEBUG Processing 604/654 atomic regions from SNP 181151 to 181751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:46,772 DEBUG Processing 356/591 atomic regions from SNP 106552 to 107152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:46,777 DEBUG Processing 581/664 atomic regions from SNP 174281 to 174881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:46,788 DEBUG Processing 41/680 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:46,880 DEBUG Processing 676/684 atomic regions from SNP 202537 to 203137 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:46,891 DEBUG Processing 730/775 atomic regions from SNP 218849 to 219449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,945 DEBUG Processing 605/654 atomic regions from SNP 181451 to 182051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:46,988 DEBUG Processing 357/591 atomic regions from SNP 106852 to 107452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:47,006 DEBUG Processing 582/664 atomic regions from SNP 174581 to 175181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:47,016 DEBUG Processing 42/680 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:47,132 DEBUG Processing 677/684 atomic regions from SNP 202837 to 203437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:47,139 DEBUG Processing 731/775 atomic regions from SNP 219149 to 219749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,167 DEBUG Processing 606/654 atomic regions from SNP 181751 to 182351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:47,199 DEBUG Processing 358/591 atomic regions from SNP 107152 to 107752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:47,233 DEBUG Processing 583/664 atomic regions from SNP 174881 to 175481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:47,240 DEBUG Processing 43/680 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:47,363 DEBUG Processing 678/684 atomic regions from SNP 203137 to 203737 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:47,391 DEBUG Processing 732/775 atomic regions from SNP 219449 to 220049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,394 DEBUG Processing 607/654 atomic regions from SNP 182051 to 182651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:47,405 DEBUG Processing 359/591 atomic regions from SNP 107452 to 108052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:47,462 DEBUG Processing 584/664 atomic regions from SNP 175181 to 175781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:47,467 DEBUG Processing 44/680 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:47,590 DEBUG Processing 679/684 atomic regions from SNP 203437 to 204037 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:47,623 DEBUG Processing 360/591 atomic regions from SNP 107752 to 108352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:47,629 DEBUG Processing 608/654 atomic regions from SNP 182351 to 182951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:47,649 DEBUG Processing 733/775 atomic regions from SNP 219749 to 220349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,699 DEBUG Processing 585/664 atomic regions from SNP 175481 to 176081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:47,706 DEBUG Processing 45/680 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:47,814 DEBUG Processing 680/684 atomic regions from SNP 203737 to 204337 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:47,834 DEBUG Processing 361/591 atomic regions from SNP 108052 to 108652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:47,862 DEBUG Processing 609/654 atomic regions from SNP 182651 to 183251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:47,907 DEBUG Processing 734/775 atomic regions from SNP 220049 to 220649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,939 DEBUG Processing 586/664 atomic regions from SNP 175781 to 176381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:47,948 DEBUG Processing 46/680 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:48,036 DEBUG Processing 681/684 atomic regions from SNP 204037 to 204637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:48,043 DEBUG Processing 362/591 atomic regions from SNP 108352 to 108952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:48,087 DEBUG Processing 610/654 atomic regions from SNP 182951 to 183551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:48,163 DEBUG Processing 735/775 atomic regions from SNP 220349 to 220949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,181 DEBUG Processing 587/664 atomic regions from SNP 176081 to 176681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:48,192 DEBUG Processing 47/680 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:48,264 DEBUG Processing 682/684 atomic regions from SNP 204337 to 204937 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:48,285 DEBUG Processing 363/591 atomic regions from SNP 108652 to 109252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:48,305 DEBUG Processing 611/654 atomic regions from SNP 183251 to 183851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:48,406 DEBUG Processing 736/775 atomic regions from SNP 220649 to 221249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,413 DEBUG Processing 588/664 atomic regions from SNP 176381 to 176981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:48,427 DEBUG Processing 48/680 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:48,499 DEBUG Processing 683/684 atomic regions from SNP 204637 to 205237 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:48,503 DEBUG Processing 364/591 atomic regions from SNP 108952 to 109552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:48,541 DEBUG Processing 612/654 atomic regions from SNP 183551 to 184151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:48,641 DEBUG Processing 589/664 atomic regions from SNP 176681 to 177281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:48,649 DEBUG Processing 737/775 atomic regions from SNP 220949 to 221549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,653 DEBUG Processing 49/680 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:48,722 DEBUG Processing 365/591 atomic regions from SNP 109252 to 109852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:48,732 DEBUG Processing 684/684 atomic regions from SNP 204937 to 205537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:48,778 DEBUG Processing 613/654 atomic regions from SNP 183851 to 184451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:48,869 DEBUG Unique SNPs positions in subchromosome 1: 205538 2025-01-31 09:45:48,888 DEBUG Processing 50/680 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:48,896 DEBUG Processing 738/775 atomic regions from SNP 221249 to 221849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,905 DEBUG Processing 590/664 atomic regions from SNP 176981 to 177581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:48,932 DEBUG Processing 366/591 atomic regions from SNP 109552 to 110152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:49,015 DEBUG Processing 614/654 atomic regions from SNP 184151 to 184751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:49,121 DEBUG Processing 51/680 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:49,135 DEBUG Processing 367/591 atomic regions from SNP 109852 to 110452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:49,149 DEBUG Processing 739/775 atomic regions from SNP 221549 to 222149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,154 DEBUG Processing 591/664 atomic regions from SNP 177281 to 177881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:49,244 DEBUG Processing 615/654 atomic regions from SNP 184451 to 185051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:49,336 DEBUG Processing 368/591 atomic regions from SNP 110152 to 110752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:49,348 DEBUG Processing 52/680 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:49,393 DEBUG Processing 592/664 atomic regions from SNP 177581 to 178181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:49,397 DEBUG Processing 740/775 atomic regions from SNP 221849 to 222449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,471 DEBUG Processing 616/654 atomic regions from SNP 184751 to 185351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:49,540 DEBUG Processing 369/591 atomic regions from SNP 110452 to 111052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:49,572 DEBUG Processing 53/680 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:49,628 DEBUG Processing 593/664 atomic regions from SNP 177881 to 178481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:49,643 DEBUG Processing 741/775 atomic regions from SNP 222149 to 222749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,681 DEBUG Subchromosome time: 183.24958040600177, subchromosome SNPs: 205538 2025-01-31 09:45:49,681 DEBUG Estimated BADs: [1.05, 2.09, 0.52, 3.14, 1.05, 2.09, 10.46, 1.05, 5.23, 2.09] SNP counts: [59006, 6276, 23889, 6402, 19834, 6927, 3803, 73344, 3149, 2908] SNP IDs counts: [59006, 6276, 23889, 6402, 19834, 6927, 3803, 73344, 3149, 2908] Critical gap: 645880bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 40.13Mbp, 43.52Mbp, 59.86Mbp, 63.24Mbp, 75.63Mbp, 79.63Mbp, 81.61Mbp, 126.90Mbp, 128.57Mbp, 130.69Mbp] 2025-01-31 09:45:49,681 DEBUG chr10 time: 183.25008172704838 s 2025-01-31 09:45:49,694 DEBUG Processing 617/654 atomic regions from SNP 185051 to 185651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:49,750 DEBUG Processing 370/591 atomic regions from SNP 110752 to 111352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:49,799 DEBUG Processing 54/680 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:49,804 DEBUG chr10: Fitting background model for 10 segments 2025-01-31 09:45:49,861 DEBUG Processing 594/664 atomic regions from SNP 178181 to 178781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:49,894 DEBUG Processing 742/775 atomic regions from SNP 222449 to 223049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,916 DEBUG Processing 618/654 atomic regions from SNP 185351 to 185951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:49,959 DEBUG Processing 371/591 atomic regions from SNP 111052 to 111652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:50,029 DEBUG Processing 55/680 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:50,096 DEBUG Processing 595/664 atomic regions from SNP 178481 to 179081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:50,139 DEBUG Processing 619/654 atomic regions from SNP 185651 to 186251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:50,146 DEBUG Processing 743/775 atomic regions from SNP 222749 to 223349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,161 DEBUG Processing 372/591 atomic regions from SNP 111352 to 111952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:50,252 DEBUG Processing 56/680 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:50,328 DEBUG Processing 596/664 atomic regions from SNP 178781 to 179381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:50,366 DEBUG Processing 373/591 atomic regions from SNP 111652 to 112252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:50,368 DEBUG Processing 620/654 atomic regions from SNP 185951 to 186551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:50,396 DEBUG Processing 744/775 atomic regions from SNP 223049 to 223649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,480 DEBUG Processing 57/680 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:50,563 DEBUG Processing 597/664 atomic regions from SNP 179081 to 179681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:50,580 DEBUG Processing 374/591 atomic regions from SNP 111952 to 112552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:50,600 DEBUG Processing 621/654 atomic regions from SNP 186251 to 186851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:50,652 DEBUG Processing 745/775 atomic regions from SNP 223349 to 223949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,712 DEBUG Processing 58/680 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:50,792 DEBUG Processing 375/591 atomic regions from SNP 112252 to 112852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:50,792 DEBUG Processing 598/664 atomic regions from SNP 179381 to 179981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:50,830 DEBUG Processing 622/654 atomic regions from SNP 186551 to 187151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:50,906 DEBUG Processing 746/775 atomic regions from SNP 223649 to 224249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,951 DEBUG Processing 59/680 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:50,997 DEBUG Processing 376/591 atomic regions from SNP 112552 to 113152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:51,019 DEBUG Processing 599/664 atomic regions from SNP 179681 to 180281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:51,052 DEBUG Processing 623/654 atomic regions from SNP 186851 to 187451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:51,161 DEBUG Processing 747/775 atomic regions from SNP 223949 to 224549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,190 DEBUG Processing 60/680 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:51,211 DEBUG Processing 377/591 atomic regions from SNP 112852 to 113452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:51,257 DEBUG Processing 600/664 atomic regions from SNP 179981 to 180581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:51,280 DEBUG Processing 624/654 atomic regions from SNP 187151 to 187751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:51,410 DEBUG Processing 748/775 atomic regions from SNP 224249 to 224849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,426 DEBUG Processing 61/680 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:51,427 DEBUG Processing 378/591 atomic regions from SNP 113152 to 113752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:51,498 DEBUG Processing 601/664 atomic regions from SNP 180281 to 180881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:51,510 DEBUG Processing 625/654 atomic regions from SNP 187451 to 188051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:51,638 DEBUG Processing 379/591 atomic regions from SNP 113452 to 114052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:51,650 DEBUG Processing 749/775 atomic regions from SNP 224549 to 225149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,653 DEBUG Processing 62/680 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:51,741 DEBUG Processing 626/654 atomic regions from SNP 187751 to 188351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:51,747 DEBUG Processing 602/664 atomic regions from SNP 180581 to 181181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:51,850 DEBUG Processing 380/591 atomic regions from SNP 113752 to 114352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:51,872 DEBUG Processing 63/680 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:51,886 DEBUG Processing 750/775 atomic regions from SNP 224849 to 225449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,962 DEBUG Processing 627/654 atomic regions from SNP 188051 to 188651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:51,982 DEBUG Processing 603/664 atomic regions from SNP 180881 to 181481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:52,074 DEBUG Processing 381/591 atomic regions from SNP 114052 to 114652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:52,111 DEBUG Processing 64/680 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:52,138 DEBUG Processing 751/775 atomic regions from SNP 225149 to 225749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,177 DEBUG Processing 628/654 atomic regions from SNP 188351 to 188951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:52,200 DEBUG Processing 604/664 atomic regions from SNP 181181 to 181781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:52,289 DEBUG Processing 382/591 atomic regions from SNP 114352 to 114952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:52,355 DEBUG Processing 65/680 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:52,396 DEBUG Processing 752/775 atomic regions from SNP 225449 to 226049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,414 DEBUG Processing 629/654 atomic regions from SNP 188651 to 189251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:52,445 DEBUG Processing 605/664 atomic regions from SNP 181481 to 182081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:52,489 DEBUG Processing 383/591 atomic regions from SNP 114652 to 115252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:52,590 DEBUG Processing 66/680 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:52,651 DEBUG Processing 753/775 atomic regions from SNP 225749 to 226349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,672 DEBUG Processing 630/654 atomic regions from SNP 188951 to 189551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:52,701 DEBUG Processing 384/591 atomic regions from SNP 114952 to 115552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:52,709 DEBUG Processing 606/664 atomic regions from SNP 181781 to 182381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:52,815 DEBUG Processing 67/680 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:52,899 DEBUG Processing 754/775 atomic regions from SNP 226049 to 226649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,928 DEBUG Processing 385/591 atomic regions from SNP 115252 to 115852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:52,929 DEBUG Processing 631/654 atomic regions from SNP 189251 to 189851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:52,967 DEBUG Processing 607/664 atomic regions from SNP 182081 to 182681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:53,046 DEBUG Processing 68/680 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:53,135 DEBUG Processing 386/591 atomic regions from SNP 115552 to 116152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:53,141 DEBUG Processing 755/775 atomic regions from SNP 226349 to 226949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,188 DEBUG Processing 632/654 atomic regions from SNP 189551 to 190151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:53,212 DEBUG Processing 608/664 atomic regions from SNP 182381 to 182981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:53,280 DEBUG Processing 69/680 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:53,341 DEBUG Processing 387/591 atomic regions from SNP 115852 to 116452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:53,385 DEBUG Processing 756/775 atomic regions from SNP 226649 to 227249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,434 DEBUG Processing 633/654 atomic regions from SNP 189851 to 190451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:53,447 DEBUG Processing 609/664 atomic regions from SNP 182681 to 183281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:53,506 DEBUG Processing 70/680 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:53,557 DEBUG Processing 388/591 atomic regions from SNP 116152 to 116752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:53,638 DEBUG Processing 757/775 atomic regions from SNP 226949 to 227549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,660 DEBUG Processing 634/654 atomic regions from SNP 190151 to 190751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:53,704 DEBUG Processing 610/664 atomic regions from SNP 182981 to 183581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:53,730 DEBUG Processing 71/680 atomic regions from SNP 21070 to 21671 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:53,765 DEBUG Processing 389/591 atomic regions from SNP 116452 to 117052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:53,880 DEBUG Processing 758/775 atomic regions from SNP 227249 to 227849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,894 DEBUG Processing 635/654 atomic regions from SNP 190451 to 191051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:53,963 DEBUG Processing 390/591 atomic regions from SNP 116752 to 117352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:53,967 DEBUG Processing 72/680 atomic regions from SNP 21371 to 21972 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:53,976 DEBUG Processing 611/664 atomic regions from SNP 183281 to 183881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:54,121 DEBUG Processing 759/775 atomic regions from SNP 227549 to 228149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,127 DEBUG Processing 636/654 atomic regions from SNP 190751 to 191351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:54,169 DEBUG Processing 391/591 atomic regions from SNP 117052 to 117652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:54,208 DEBUG Processing 73/680 atomic regions from SNP 21672 to 22273 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:54,256 DEBUG Processing 612/664 atomic regions from SNP 183581 to 184181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:54,358 DEBUG Processing 637/654 atomic regions from SNP 191051 to 191651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:54,365 DEBUG Processing 760/775 atomic regions from SNP 227849 to 228449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,380 DEBUG Processing 392/591 atomic regions from SNP 117352 to 117952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:54,433 DEBUG Processing 74/680 atomic regions from SNP 21973 to 22574 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:54,521 DEBUG Processing 613/664 atomic regions from SNP 183881 to 184481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:54,590 DEBUG Processing 638/654 atomic regions from SNP 191351 to 191951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:54,594 DEBUG Processing 393/591 atomic regions from SNP 117652 to 118252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:54,614 DEBUG Processing 761/775 atomic regions from SNP 228149 to 228749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,661 DEBUG Processing 75/680 atomic regions from SNP 22274 to 22875 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:54,754 DEBUG Processing 614/664 atomic regions from SNP 184181 to 184781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:54,806 DEBUG Processing 394/591 atomic regions from SNP 117952 to 118552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:54,821 DEBUG Processing 639/654 atomic regions from SNP 191651 to 192251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:54,872 DEBUG Processing 762/775 atomic regions from SNP 228449 to 229049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,895 DEBUG Processing 76/680 atomic regions from SNP 22575 to 23176 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:54,982 DEBUG Processing 615/664 atomic regions from SNP 184481 to 185081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,018 DEBUG Processing 395/591 atomic regions from SNP 118252 to 118852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:55,050 DEBUG Processing 640/654 atomic regions from SNP 191951 to 192551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:55,118 DEBUG Processing 763/775 atomic regions from SNP 228749 to 229349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,125 DEBUG Processing 77/680 atomic regions from SNP 22876 to 23477 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:55,216 DEBUG Processing 616/664 atomic regions from SNP 184781 to 185381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,234 DEBUG Processing 396/591 atomic regions from SNP 118552 to 119152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:55,284 DEBUG Processing 641/654 atomic regions from SNP 192251 to 192851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:55,348 DEBUG Processing 78/680 atomic regions from SNP 23177 to 23778 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:55,358 DEBUG Processing 764/775 atomic regions from SNP 229049 to 229649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,441 DEBUG Processing 397/591 atomic regions from SNP 118852 to 119452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:55,445 DEBUG Processing 617/664 atomic regions from SNP 185081 to 185681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,520 DEBUG Processing 642/654 atomic regions from SNP 192551 to 193151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:55,579 DEBUG Processing 79/680 atomic regions from SNP 23478 to 24079 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:55,605 DEBUG Processing 765/775 atomic regions from SNP 229349 to 229949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,637 DEBUG Processing 398/591 atomic regions from SNP 119152 to 119752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:55,667 DEBUG Processing 618/664 atomic regions from SNP 185381 to 185981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,751 DEBUG Processing 643/654 atomic regions from SNP 192851 to 193451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:55,816 DEBUG Processing 80/680 atomic regions from SNP 23779 to 24380 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:55,851 DEBUG Processing 399/591 atomic regions from SNP 119452 to 120052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:55,853 DEBUG Processing 766/775 atomic regions from SNP 229649 to 230249 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,920 DEBUG Processing 619/664 atomic regions from SNP 185681 to 186281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,972 DEBUG Processing 644/654 atomic regions from SNP 193151 to 193751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:56,051 DEBUG Processing 81/680 atomic regions from SNP 24080 to 24681 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:56,069 DEBUG Processing 400/591 atomic regions from SNP 119752 to 120352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:56,101 DEBUG Processing 767/775 atomic regions from SNP 229949 to 230549 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,160 DEBUG Processing 620/664 atomic regions from SNP 185981 to 186581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:56,196 DEBUG Processing 645/654 atomic regions from SNP 193451 to 194051 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:56,280 DEBUG Processing 401/591 atomic regions from SNP 120052 to 120652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:56,284 DEBUG Processing 82/680 atomic regions from SNP 24381 to 24982 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:56,347 DEBUG Processing 768/775 atomic regions from SNP 230249 to 230849 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,423 DEBUG Processing 621/664 atomic regions from SNP 186281 to 186881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:56,424 DEBUG Processing 646/654 atomic regions from SNP 193751 to 194351 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:56,485 DEBUG Processing 402/591 atomic regions from SNP 120352 to 120952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:56,516 DEBUG Processing 83/680 atomic regions from SNP 24682 to 25283 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:56,596 DEBUG Processing 769/775 atomic regions from SNP 230549 to 231149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,650 DEBUG Processing 647/654 atomic regions from SNP 194051 to 194651 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:56,665 DEBUG Processing 622/664 atomic regions from SNP 186581 to 187181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:56,696 DEBUG Processing 403/591 atomic regions from SNP 120652 to 121252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:56,744 DEBUG Processing 84/680 atomic regions from SNP 24983 to 25584 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:56,845 DEBUG Processing 770/775 atomic regions from SNP 230849 to 231449 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,881 DEBUG Processing 648/654 atomic regions from SNP 194351 to 194951 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:56,906 DEBUG Processing 404/591 atomic regions from SNP 120952 to 121552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:56,922 DEBUG Processing 623/664 atomic regions from SNP 186881 to 187481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:56,965 DEBUG Processing 85/680 atomic regions from SNP 25284 to 25885 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:57,092 DEBUG Processing 771/775 atomic regions from SNP 231149 to 231749 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,117 DEBUG Processing 649/654 atomic regions from SNP 194651 to 195251 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:57,122 DEBUG Processing 405/591 atomic regions from SNP 121252 to 121852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:57,194 DEBUG Processing 624/664 atomic regions from SNP 187181 to 187781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:57,224 DEBUG Processing 86/680 atomic regions from SNP 25585 to 26186 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:57,338 DEBUG Processing 772/775 atomic regions from SNP 231449 to 232049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,340 DEBUG Processing 406/591 atomic regions from SNP 121552 to 122152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:57,353 DEBUG Processing 650/654 atomic regions from SNP 194951 to 195551 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:57,460 DEBUG Processing 625/664 atomic regions from SNP 187481 to 188081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:57,492 DEBUG Processing 87/680 atomic regions from SNP 25886 to 26487 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:57,553 DEBUG Processing 407/591 atomic regions from SNP 121852 to 122452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:57,585 DEBUG Processing 651/654 atomic regions from SNP 195251 to 195851 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:57,587 DEBUG Processing 773/775 atomic regions from SNP 231749 to 232349 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,726 DEBUG Processing 626/664 atomic regions from SNP 187781 to 188381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:57,762 DEBUG Processing 88/680 atomic regions from SNP 26187 to 26788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:57,765 DEBUG Processing 408/591 atomic regions from SNP 122152 to 122752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:57,817 DEBUG Processing 652/654 atomic regions from SNP 195551 to 196151 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:57,841 DEBUG Processing 774/775 atomic regions from SNP 232049 to 232649 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,974 DEBUG Processing 409/591 atomic regions from SNP 122452 to 123052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:57,981 DEBUG Processing 627/664 atomic regions from SNP 188081 to 188681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,021 DEBUG Processing 89/680 atomic regions from SNP 26488 to 27088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:58,047 DEBUG Processing 653/654 atomic regions from SNP 195851 to 196451 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:58,098 DEBUG Processing 775/775 atomic regions from SNP 232349 to 232949 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:58,187 DEBUG Processing 410/591 atomic regions from SNP 122752 to 123352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:58,233 DEBUG Processing 628/664 atomic regions from SNP 188381 to 188981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,245 DEBUG Unique SNPs positions in subchromosome 1: 232950 2025-01-31 09:45:58,277 DEBUG Processing 90/680 atomic regions from SNP 26788 to 27388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:58,286 DEBUG Processing 654/654 atomic regions from SNP 196151 to 196751 for chr7 (subchromosome 4 of 4). 2025-01-31 09:45:58,389 DEBUG Processing 411/591 atomic regions from SNP 123052 to 123652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:58,425 DEBUG Unique SNPs positions in subchromosome 4: 196752 2025-01-31 09:45:58,504 DEBUG Processing 629/664 atomic regions from SNP 188681 to 189281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,541 DEBUG Processing 91/680 atomic regions from SNP 27088 to 27688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:58,596 DEBUG Processing 412/591 atomic regions from SNP 123352 to 123952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:58,776 DEBUG Processing 630/664 atomic regions from SNP 188981 to 189581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,796 DEBUG Processing 92/680 atomic regions from SNP 27388 to 27988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:58,810 DEBUG Processing 413/591 atomic regions from SNP 123652 to 124252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:59,014 DEBUG Processing 414/591 atomic regions from SNP 123952 to 124552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:59,047 DEBUG Processing 631/664 atomic regions from SNP 189281 to 189881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:59,066 DEBUG Processing 93/680 atomic regions from SNP 27688 to 28288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:59,212 DEBUG Processing 415/591 atomic regions from SNP 124252 to 124852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:59,294 DEBUG Processing 632/664 atomic regions from SNP 189581 to 190181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:59,321 DEBUG Processing 94/680 atomic regions from SNP 27988 to 28588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:59,425 DEBUG Processing 416/591 atomic regions from SNP 124552 to 125152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:59,554 DEBUG Processing 95/680 atomic regions from SNP 28288 to 28888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:59,555 DEBUG Processing 633/664 atomic regions from SNP 189881 to 190481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:59,638 DEBUG Processing 417/591 atomic regions from SNP 124852 to 125452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:45:59,689 DEBUG Subchromosome time: 220.88061588909477, subchromosome SNPs: 232950 2025-01-31 09:45:59,689 DEBUG Estimated BADs: [0.45, 1.80, 0.90, 2.70, 0.45, 2.70, 0.90, 5.40, 1.80, 0.90] SNP counts: [37565, 12648, 55169, 3162, 14856, 14377, 35042, 1290, 26148, 32693] SNP IDs counts: [37565, 12648, 55169, 3162, 14856, 14377, 35042, 1290, 26148, 32693] Critical gap: 697418bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 28.25Mbp, 35.13Mbp, 70.75Mbp, 72.43Mbp, 83.00Mbp, 90.98Mbp, 112.93Mbp, 113.60Mbp, 128.76Mbp, 149.74Mbp] 2025-01-31 09:45:59,690 DEBUG chr6 time: 220.88105804508086 s 2025-01-31 09:45:59,786 DEBUG Processing 96/680 atomic regions from SNP 28588 to 29188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:45:59,812 DEBUG Processing 634/664 atomic regions from SNP 190181 to 190781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:59,836 DEBUG chr6: Fitting background model for 10 segments 2025-01-31 09:45:59,846 DEBUG Processing 418/591 atomic regions from SNP 125152 to 125752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:00,031 DEBUG Processing 97/680 atomic regions from SNP 28888 to 29488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:00,057 DEBUG Processing 635/664 atomic regions from SNP 190481 to 191081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:00,060 DEBUG Processing 419/591 atomic regions from SNP 125452 to 126052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:00,271 DEBUG Processing 98/680 atomic regions from SNP 29188 to 29788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:00,279 DEBUG Processing 420/591 atomic regions from SNP 125752 to 126352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:00,310 DEBUG Processing 636/664 atomic regions from SNP 190781 to 191381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:00,491 DEBUG Processing 421/591 atomic regions from SNP 126052 to 126652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:00,507 DEBUG Processing 99/680 atomic regions from SNP 29488 to 30088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:00,552 DEBUG Processing 637/664 atomic regions from SNP 191081 to 191681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:00,692 DEBUG Processing 422/591 atomic regions from SNP 126352 to 126952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:00,729 DEBUG Processing 100/680 atomic regions from SNP 29788 to 30388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:00,779 DEBUG Processing 638/664 atomic regions from SNP 191381 to 191981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:00,902 DEBUG Processing 423/591 atomic regions from SNP 126652 to 127252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:00,959 DEBUG Processing 101/680 atomic regions from SNP 30088 to 30688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:01,026 DEBUG Processing 639/664 atomic regions from SNP 191681 to 192281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,113 DEBUG Processing 424/591 atomic regions from SNP 126952 to 127552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:01,188 DEBUG Processing 102/680 atomic regions from SNP 30388 to 30988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:01,267 DEBUG Processing 640/664 atomic regions from SNP 191981 to 192581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,323 DEBUG Processing 425/591 atomic regions from SNP 127252 to 127852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:01,429 DEBUG Processing 103/680 atomic regions from SNP 30688 to 31288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:01,494 DEBUG Processing 641/664 atomic regions from SNP 192281 to 192881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,527 DEBUG Processing 426/591 atomic regions from SNP 127552 to 128152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:01,673 DEBUG Processing 104/680 atomic regions from SNP 30988 to 31588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:01,725 DEBUG Processing 642/664 atomic regions from SNP 192581 to 193181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,733 DEBUG Processing 427/591 atomic regions from SNP 127852 to 128452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:01,914 DEBUG Processing 105/680 atomic regions from SNP 31288 to 31888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:01,942 DEBUG Processing 428/591 atomic regions from SNP 128152 to 128752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:01,964 DEBUG Processing 643/664 atomic regions from SNP 192881 to 193481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,145 DEBUG Processing 106/680 atomic regions from SNP 31588 to 32188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:02,150 DEBUG Processing 429/591 atomic regions from SNP 128452 to 129052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:02,194 DEBUG Processing 644/664 atomic regions from SNP 193181 to 193781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,220 DEBUG Subchromosome time: 182.45230581902433, subchromosome SNPs: 196752 2025-01-31 09:46:02,220 DEBUG Estimated BADs: [0.54, 4.35, 2.18, 0.22, 5.44, 0.22, 4.35, 0.36, 9.79, 1.09, 0.00, 0.54, 3.26, 1.09, 9.79, 3.26, 1.09, 0.36, 1.09, 0.36, 1.09, 0.54, 1.09, 2.18, 1.09, 5.44, 1.09, 6.53, 2.18] SNP counts: [846, 2188, 3213, 2839, 465, 2785, 2223, 2125, 1381, 599, 9, 1258, 11780, 18186, 1703, 2957, 4529, 16852, 9059, 8211, 20247, 13834, 6133, 6000, 41252, 3696, 22763, 1194, 7098] SNP IDs counts: [846, 2188, 3213, 2839, 465, 2785, 2223, 2125, 1381, 599, 9, 1258, 11780, 18186, 1703, 2957, 4529, 16852, 9059, 8211, 20247, 13834, 6133, 6000, 41252, 3696, 22763, 1194, 7098] Critical gap: 688727bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.61Mbp, 5.10Mbp, 9.25Mbp[0.71Mbp], 12.82Mbp, 13.06Mbp, 15.91Mbp, 17.08Mbp, 19.00Mbp, 19.72Mbp, 20.07Mbp[0.71Mbp], 21.05Mbp[1.74Mbp], 24.30Mbp, 31.07Mbp, 44.82Mbp, 45.70Mbp, 47.29Mbp, 50.13Mbp, 63.26Mbp, 68.39Mbp, 73.52Mbp, 85.40Mbp, 94.99Mbp, 98.66Mbp, 101.82Mbp, 126.26Mbp, 128.23Mbp, 140.84Mbp, 141.46Mbp, 145.44Mbp] 2025-01-31 09:46:02,220 DEBUG chr7 time: 182.45295993005857 s 2025-01-31 09:46:02,362 DEBUG Processing 430/591 atomic regions from SNP 128752 to 129352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:02,364 DEBUG chr7: Fitting background model for 28 segments 2025-01-31 09:46:02,379 DEBUG Processing 107/680 atomic regions from SNP 31888 to 32488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:02,422 DEBUG Processing 645/664 atomic regions from SNP 193481 to 194081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,575 DEBUG Processing 431/591 atomic regions from SNP 129052 to 129652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:02,620 DEBUG Processing 108/680 atomic regions from SNP 32188 to 32788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:02,653 DEBUG Processing 646/664 atomic regions from SNP 193781 to 194381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,778 DEBUG Processing 432/591 atomic regions from SNP 129352 to 129952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:02,864 DEBUG Processing 109/680 atomic regions from SNP 32488 to 33088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:02,894 DEBUG Processing 647/664 atomic regions from SNP 194081 to 194681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,982 DEBUG Processing 433/591 atomic regions from SNP 129652 to 130252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:03,102 DEBUG Processing 110/680 atomic regions from SNP 32788 to 33388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:03,139 DEBUG Processing 648/664 atomic regions from SNP 194381 to 194981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:03,201 DEBUG Processing 434/591 atomic regions from SNP 129952 to 130552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:03,336 DEBUG Processing 111/680 atomic regions from SNP 33088 to 33688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:03,380 DEBUG Processing 649/664 atomic regions from SNP 194681 to 195281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:03,415 DEBUG Processing 435/591 atomic regions from SNP 130252 to 130852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:03,564 DEBUG Processing 112/680 atomic regions from SNP 33388 to 33988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:03,625 DEBUG Processing 436/591 atomic regions from SNP 130552 to 131152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:03,643 DEBUG Processing 650/664 atomic regions from SNP 194981 to 195581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:03,790 DEBUG Processing 113/680 atomic regions from SNP 33688 to 34288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:03,830 DEBUG Processing 437/591 atomic regions from SNP 130852 to 131452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:03,885 DEBUG Processing 651/664 atomic regions from SNP 195281 to 195881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,028 DEBUG Processing 114/680 atomic regions from SNP 33988 to 34588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:04,033 DEBUG Processing 438/591 atomic regions from SNP 131152 to 131752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:04,129 DEBUG Processing 652/664 atomic regions from SNP 195581 to 196181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,238 DEBUG Processing 439/591 atomic regions from SNP 131452 to 132052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:04,263 DEBUG Processing 115/680 atomic regions from SNP 34288 to 34888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:04,366 DEBUG Processing 653/664 atomic regions from SNP 195881 to 196481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,449 DEBUG Processing 440/591 atomic regions from SNP 131752 to 132352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:04,495 DEBUG Processing 116/680 atomic regions from SNP 34588 to 35188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:04,603 DEBUG Processing 654/664 atomic regions from SNP 196181 to 196781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,662 DEBUG Processing 441/591 atomic regions from SNP 132052 to 132652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:04,731 DEBUG Processing 117/680 atomic regions from SNP 34888 to 35488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:04,843 DEBUG Processing 655/664 atomic regions from SNP 196481 to 197081 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,871 DEBUG Processing 442/591 atomic regions from SNP 132352 to 132952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:04,967 DEBUG Processing 118/680 atomic regions from SNP 35188 to 35788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:05,078 DEBUG Processing 656/664 atomic regions from SNP 196781 to 197381 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:05,078 DEBUG Processing 443/591 atomic regions from SNP 132652 to 133252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:05,214 DEBUG Processing 119/680 atomic regions from SNP 35488 to 36088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:05,279 DEBUG Processing 444/591 atomic regions from SNP 132952 to 133552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:05,308 DEBUG Processing 657/664 atomic regions from SNP 197081 to 197681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:05,468 DEBUG Processing 120/680 atomic regions from SNP 35788 to 36388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:05,495 DEBUG Processing 445/591 atomic regions from SNP 133252 to 133852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:05,548 DEBUG Processing 658/664 atomic regions from SNP 197381 to 197981 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:05,715 DEBUG Processing 446/591 atomic regions from SNP 133552 to 134152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:05,720 DEBUG Processing 121/680 atomic regions from SNP 36088 to 36688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:05,797 DEBUG Processing 659/664 atomic regions from SNP 197681 to 198281 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:05,929 DEBUG Processing 447/591 atomic regions from SNP 133852 to 134452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:05,958 DEBUG Processing 122/680 atomic regions from SNP 36388 to 36988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:06,042 DEBUG Processing 660/664 atomic regions from SNP 197981 to 198581 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:06,140 DEBUG Processing 448/591 atomic regions from SNP 134152 to 134752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:06,194 DEBUG Processing 123/680 atomic regions from SNP 36688 to 37288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:06,284 DEBUG Processing 661/664 atomic regions from SNP 198281 to 198881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:06,352 DEBUG Processing 449/591 atomic regions from SNP 134452 to 135052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:06,428 DEBUG Processing 124/680 atomic regions from SNP 36988 to 37588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:06,520 DEBUG Processing 662/664 atomic regions from SNP 198581 to 199181 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:06,566 DEBUG Processing 450/591 atomic regions from SNP 134752 to 135352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:06,668 DEBUG Processing 125/680 atomic regions from SNP 37288 to 37888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:06,756 DEBUG Processing 663/664 atomic regions from SNP 198881 to 199481 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:06,779 DEBUG Processing 451/591 atomic regions from SNP 135052 to 135652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:06,909 DEBUG Processing 126/680 atomic regions from SNP 37588 to 38188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:06,993 DEBUG Processing 452/591 atomic regions from SNP 135352 to 135952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:06,994 DEBUG Processing 664/664 atomic regions from SNP 199181 to 199781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:07,138 DEBUG Processing 127/680 atomic regions from SNP 37888 to 38488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:07,148 DEBUG Unique SNPs positions in subchromosome 1: 199782 2025-01-31 09:46:07,208 DEBUG Processing 453/591 atomic regions from SNP 135652 to 136252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:07,373 DEBUG Processing 128/680 atomic regions from SNP 38188 to 38788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:07,419 DEBUG Processing 454/591 atomic regions from SNP 135952 to 136552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:07,601 DEBUG Processing 129/680 atomic regions from SNP 38488 to 39088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:07,624 DEBUG Processing 455/591 atomic regions from SNP 136252 to 136852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:07,821 DEBUG Processing 456/591 atomic regions from SNP 136552 to 137152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:07,827 DEBUG Processing 130/680 atomic regions from SNP 38788 to 39388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:08,024 DEBUG Processing 457/591 atomic regions from SNP 136852 to 137452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:08,056 DEBUG Processing 131/680 atomic regions from SNP 39088 to 39688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:08,234 DEBUG Processing 458/591 atomic regions from SNP 137152 to 137752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:08,291 DEBUG Processing 132/680 atomic regions from SNP 39388 to 39988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:08,439 DEBUG Processing 459/591 atomic regions from SNP 137452 to 138052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:08,531 DEBUG Processing 133/680 atomic regions from SNP 39688 to 40288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:08,647 DEBUG Processing 460/591 atomic regions from SNP 137752 to 138352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:08,753 DEBUG Processing 134/680 atomic regions from SNP 39988 to 40588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:08,858 DEBUG Processing 461/591 atomic regions from SNP 138052 to 138652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:08,987 DEBUG Processing 135/680 atomic regions from SNP 40288 to 40888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:09,066 DEBUG Processing 462/591 atomic regions from SNP 138352 to 138952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:09,137 DEBUG Subchromosome time: 185.57549327099696, subchromosome SNPs: 199782 2025-01-31 09:46:09,138 DEBUG Estimated BADs: [2.23, 0.14, 1.12, 0.56, 10.04, 0.56, 8.93, 3.35, 1.12, 4.46, 1.12, 3.35, 0.37, 2.23, 0.56, 2.23, 6.69, 2.23] SNP counts: [2555, 2003, 31065, 49564, 203, 13430, 2169, 2401, 18064, 2530, 16247, 2838, 12099, 13401, 8243, 4540, 9230, 9200] SNP IDs counts: [2555, 2003, 31065, 49564, 203, 13430, 2169, 2401, 18064, 2530, 16247, 2838, 12099, 13401, 8243, 4540, 9230, 9200] Critical gap: 648600bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.68Mbp, 6.68Mbp, 26.97Mbp, 60.89Mbp, 60.99Mbp, 69.79Mbp, 70.92Mbp, 72.44Mbp, 83.59Mbp, 84.91Mbp, 94.15Mbp, 95.67Mbp, 104.53Mbp, 111.85Mbp, 116.89Mbp, 119.29Mbp, 124.23Mbp, 129.40Mbp] 2025-01-31 09:46:09,138 DEBUG chr8 time: 185.57599423301872 s 2025-01-31 09:46:09,228 DEBUG Processing 136/680 atomic regions from SNP 40588 to 41188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:09,264 DEBUG chr8: Fitting background model for 18 segments 2025-01-31 09:46:09,270 DEBUG Processing 463/591 atomic regions from SNP 138652 to 139252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:09,473 DEBUG Processing 137/680 atomic regions from SNP 40888 to 41488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:09,476 DEBUG Processing 464/591 atomic regions from SNP 138952 to 139552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:09,675 DEBUG Processing 465/591 atomic regions from SNP 139252 to 139852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:09,711 DEBUG Processing 138/680 atomic regions from SNP 41188 to 41788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:09,876 DEBUG Processing 466/591 atomic regions from SNP 139552 to 140152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:09,939 DEBUG Processing 139/680 atomic regions from SNP 41488 to 42088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:10,095 DEBUG Processing 467/591 atomic regions from SNP 139852 to 140452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:10,170 DEBUG Processing 140/680 atomic regions from SNP 41788 to 42388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:10,313 DEBUG Processing 468/591 atomic regions from SNP 140152 to 140752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:10,409 DEBUG Processing 141/680 atomic regions from SNP 42088 to 42688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:10,514 DEBUG Processing 469/591 atomic regions from SNP 140452 to 141052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:10,658 DEBUG Processing 142/680 atomic regions from SNP 42388 to 42988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:10,721 DEBUG Processing 470/591 atomic regions from SNP 140752 to 141352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:10,892 DEBUG Processing 143/680 atomic regions from SNP 42688 to 43288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:10,927 DEBUG Processing 471/591 atomic regions from SNP 141052 to 141652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:11,132 DEBUG Processing 144/680 atomic regions from SNP 42988 to 43588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:11,138 DEBUG Processing 472/591 atomic regions from SNP 141352 to 141952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:11,356 DEBUG Processing 473/591 atomic regions from SNP 141652 to 142252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:11,373 DEBUG Processing 145/680 atomic regions from SNP 43288 to 43888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:11,568 DEBUG Processing 474/591 atomic regions from SNP 141952 to 142552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:11,615 DEBUG Processing 146/680 atomic regions from SNP 43588 to 44188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:11,775 DEBUG Processing 475/591 atomic regions from SNP 142252 to 142852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:11,846 DEBUG Processing 147/680 atomic regions from SNP 43888 to 44488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:11,979 DEBUG Processing 476/591 atomic regions from SNP 142552 to 143152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:12,068 DEBUG Processing 148/680 atomic regions from SNP 44188 to 44788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:12,187 DEBUG Processing 477/591 atomic regions from SNP 142852 to 143452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:12,292 DEBUG Processing 149/680 atomic regions from SNP 44488 to 45088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:12,393 DEBUG Processing 478/591 atomic regions from SNP 143152 to 143752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:12,530 DEBUG Processing 150/680 atomic regions from SNP 44788 to 45388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:12,595 DEBUG Processing 479/591 atomic regions from SNP 143452 to 144052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:12,759 DEBUG Processing 151/680 atomic regions from SNP 45088 to 45688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:12,796 DEBUG Processing 480/591 atomic regions from SNP 143752 to 144352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:12,990 DEBUG Processing 152/680 atomic regions from SNP 45388 to 45988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:13,002 DEBUG Processing 481/591 atomic regions from SNP 144052 to 144652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:13,204 DEBUG Processing 482/591 atomic regions from SNP 144352 to 144952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:13,226 DEBUG Processing 153/680 atomic regions from SNP 45688 to 46288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:13,399 DEBUG Processing 483/591 atomic regions from SNP 144652 to 145252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:13,453 DEBUG Processing 154/680 atomic regions from SNP 45988 to 46588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:13,605 DEBUG Processing 484/591 atomic regions from SNP 144952 to 145552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:13,637 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:46:13,674 DEBUG Processing 155/680 atomic regions from SNP 46288 to 46888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:13,808 DEBUG Processing 485/591 atomic regions from SNP 145252 to 145852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:13,901 DEBUG Processing 156/680 atomic regions from SNP 46588 to 47188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:14,007 DEBUG Processing 486/591 atomic regions from SNP 145552 to 146152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:14,127 DEBUG Processing 157/680 atomic regions from SNP 46888 to 47488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:14,207 DEBUG Processing 487/591 atomic regions from SNP 145852 to 146452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:14,356 DEBUG Processing 158/680 atomic regions from SNP 47188 to 47788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:14,408 DEBUG Processing 488/591 atomic regions from SNP 146152 to 146752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:14,590 DEBUG Processing 159/680 atomic regions from SNP 47488 to 48088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:14,618 DEBUG Processing 489/591 atomic regions from SNP 146452 to 147052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:14,835 DEBUG Processing 490/591 atomic regions from SNP 146752 to 147352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:14,838 DEBUG Processing 160/680 atomic regions from SNP 47788 to 48388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:15,036 DEBUG Processing 491/591 atomic regions from SNP 147052 to 147652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:15,069 DEBUG Processing 161/680 atomic regions from SNP 48088 to 48688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:15,231 DEBUG Processing 492/591 atomic regions from SNP 147352 to 147952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:15,293 DEBUG Processing 162/680 atomic regions from SNP 48388 to 48988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:15,355 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:46:15,436 DEBUG Processing 493/591 atomic regions from SNP 147652 to 148252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:15,523 DEBUG Processing 163/680 atomic regions from SNP 48688 to 49288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:15,639 DEBUG Processing 494/591 atomic regions from SNP 147952 to 148552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:15,757 DEBUG Processing 164/680 atomic regions from SNP 48988 to 49588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:15,839 DEBUG Processing 495/591 atomic regions from SNP 148252 to 148852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:15,996 DEBUG Processing 165/680 atomic regions from SNP 49288 to 49888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:16,053 DEBUG Processing 496/591 atomic regions from SNP 148552 to 149152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:16,219 DEBUG Processing 166/680 atomic regions from SNP 49588 to 50188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:16,262 DEBUG Processing 497/591 atomic regions from SNP 148852 to 149452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:16,440 DEBUG Processing 167/680 atomic regions from SNP 49888 to 50488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:16,457 DEBUG Processing 498/591 atomic regions from SNP 149152 to 149752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:16,654 DEBUG Processing 499/591 atomic regions from SNP 149452 to 150052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:16,671 DEBUG Processing 168/680 atomic regions from SNP 50188 to 50788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:16,858 DEBUG Processing 500/591 atomic regions from SNP 149752 to 150352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:16,906 DEBUG Processing 169/680 atomic regions from SNP 50488 to 51088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:17,067 DEBUG Processing 501/591 atomic regions from SNP 150052 to 150652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:17,137 DEBUG Processing 170/680 atomic regions from SNP 50788 to 51388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:17,272 DEBUG Processing 502/591 atomic regions from SNP 150352 to 150952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:17,368 DEBUG Processing 171/680 atomic regions from SNP 51088 to 51688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:17,519 DEBUG Processing 503/591 atomic regions from SNP 150652 to 151252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:17,687 DEBUG Processing 172/680 atomic regions from SNP 51388 to 51988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:17,876 DEBUG Processing 504/591 atomic regions from SNP 150952 to 151552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:18,066 DEBUG Processing 173/680 atomic regions from SNP 51688 to 52288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:18,126 DEBUG Processing 505/591 atomic regions from SNP 151252 to 151852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:18,367 DEBUG Processing 174/680 atomic regions from SNP 51988 to 52588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:18,389 DEBUG Processing 506/591 atomic regions from SNP 151552 to 152152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:18,638 DEBUG Processing 507/591 atomic regions from SNP 151852 to 152452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:18,664 DEBUG Processing 175/680 atomic regions from SNP 52288 to 52888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:18,843 DEBUG Processing 508/591 atomic regions from SNP 152152 to 152752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:18,889 DEBUG Processing 176/680 atomic regions from SNP 52588 to 53188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:19,065 DEBUG Processing 509/591 atomic regions from SNP 152452 to 153052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:19,141 DEBUG Processing 177/680 atomic regions from SNP 52888 to 53488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:19,273 DEBUG Processing 510/591 atomic regions from SNP 152752 to 153352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:19,369 DEBUG Processing 178/680 atomic regions from SNP 53188 to 53788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:19,482 DEBUG Processing 511/591 atomic regions from SNP 153052 to 153652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:19,591 DEBUG Processing 179/680 atomic regions from SNP 53488 to 54088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:19,693 DEBUG Processing 512/591 atomic regions from SNP 153352 to 153952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:19,813 DEBUG Processing 180/680 atomic regions from SNP 53788 to 54388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:19,897 DEBUG Processing 513/591 atomic regions from SNP 153652 to 154252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:20,053 DEBUG Processing 181/680 atomic regions from SNP 54088 to 54688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:20,108 DEBUG Processing 514/591 atomic regions from SNP 153952 to 154552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:20,304 DEBUG Processing 182/680 atomic regions from SNP 54388 to 54988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:20,320 DEBUG Processing 515/591 atomic regions from SNP 154252 to 154852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:20,526 DEBUG Processing 516/591 atomic regions from SNP 154552 to 155152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:20,545 DEBUG Processing 183/680 atomic regions from SNP 54688 to 55288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:20,729 DEBUG Processing 517/591 atomic regions from SNP 154852 to 155452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:20,785 DEBUG Processing 184/680 atomic regions from SNP 54988 to 55588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:20,934 DEBUG Processing 518/591 atomic regions from SNP 155152 to 155752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:21,021 DEBUG Processing 185/680 atomic regions from SNP 55288 to 55888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:21,137 DEBUG Processing 519/591 atomic regions from SNP 155452 to 156052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:21,256 DEBUG Processing 186/680 atomic regions from SNP 55588 to 56188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:21,335 DEBUG Processing 520/591 atomic regions from SNP 155752 to 156352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:21,487 DEBUG Processing 187/680 atomic regions from SNP 55888 to 56488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:21,530 DEBUG Processing 521/591 atomic regions from SNP 156052 to 156652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:21,714 DEBUG Processing 188/680 atomic regions from SNP 56188 to 56788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:21,731 DEBUG Processing 522/591 atomic regions from SNP 156352 to 156952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:21,935 DEBUG Processing 523/591 atomic regions from SNP 156652 to 157252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:21,939 DEBUG Processing 189/680 atomic regions from SNP 56488 to 57088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:22,139 DEBUG Processing 524/591 atomic regions from SNP 156952 to 157552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:22,159 DEBUG Processing 190/680 atomic regions from SNP 56788 to 57388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:22,353 DEBUG Processing 525/591 atomic regions from SNP 157252 to 157852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:22,384 DEBUG Processing 191/680 atomic regions from SNP 57088 to 57688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:22,557 DEBUG Processing 526/591 atomic regions from SNP 157552 to 158152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:22,612 DEBUG Processing 192/680 atomic regions from SNP 57388 to 57988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:22,756 DEBUG Processing 527/591 atomic regions from SNP 157852 to 158452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:22,834 DEBUG Processing 193/680 atomic regions from SNP 57688 to 58288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:22,967 DEBUG Processing 528/591 atomic regions from SNP 158152 to 158752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:23,067 DEBUG Processing 194/680 atomic regions from SNP 57988 to 58588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:23,178 DEBUG Processing 529/591 atomic regions from SNP 158452 to 159052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:23,287 DEBUG Processing 195/680 atomic regions from SNP 58288 to 58888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:23,374 DEBUG Processing 530/591 atomic regions from SNP 158752 to 159352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:23,525 DEBUG Processing 196/680 atomic regions from SNP 58588 to 59188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:23,569 DEBUG Processing 531/591 atomic regions from SNP 159052 to 159652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:23,764 DEBUG Processing 197/680 atomic regions from SNP 58888 to 59488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:23,776 DEBUG Processing 532/591 atomic regions from SNP 159352 to 159952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:23,988 DEBUG Processing 533/591 atomic regions from SNP 159652 to 160252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:24,001 DEBUG Processing 198/680 atomic regions from SNP 59188 to 59788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:24,192 DEBUG Processing 534/591 atomic regions from SNP 159952 to 160552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:24,229 DEBUG Processing 199/680 atomic regions from SNP 59488 to 60088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:24,392 DEBUG Processing 535/591 atomic regions from SNP 160252 to 160852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:24,460 DEBUG Processing 200/680 atomic regions from SNP 59788 to 60388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:24,590 DEBUG Processing 536/591 atomic regions from SNP 160552 to 161152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:24,685 DEBUG Processing 201/680 atomic regions from SNP 60088 to 60688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:24,793 DEBUG Processing 537/591 atomic regions from SNP 160852 to 161452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:24,900 DEBUG Processing 202/680 atomic regions from SNP 60388 to 60988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:24,994 DEBUG Processing 538/591 atomic regions from SNP 161152 to 161752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:25,118 DEBUG Processing 203/680 atomic regions from SNP 60688 to 61288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:25,200 DEBUG Processing 539/591 atomic regions from SNP 161452 to 162052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:25,346 DEBUG Processing 204/680 atomic regions from SNP 60988 to 61588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:25,408 DEBUG Processing 540/591 atomic regions from SNP 161752 to 162352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:25,574 DEBUG Processing 205/680 atomic regions from SNP 61288 to 61888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:25,611 DEBUG Processing 541/591 atomic regions from SNP 162052 to 162652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:25,793 DEBUG Processing 206/680 atomic regions from SNP 61588 to 62188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:25,812 DEBUG Processing 542/591 atomic regions from SNP 162352 to 162952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:26,016 DEBUG Processing 543/591 atomic regions from SNP 162652 to 163252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:26,022 DEBUG Processing 207/680 atomic regions from SNP 61888 to 62488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:26,222 DEBUG Processing 544/591 atomic regions from SNP 162952 to 163552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:26,249 DEBUG Processing 208/680 atomic regions from SNP 62188 to 62788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:26,428 DEBUG Processing 545/591 atomic regions from SNP 163252 to 163852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:26,479 DEBUG Processing 209/680 atomic regions from SNP 62488 to 63088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:26,645 DEBUG Processing 546/591 atomic regions from SNP 163552 to 164152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:26,704 DEBUG Processing 210/680 atomic regions from SNP 62788 to 63388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:26,867 DEBUG Processing 547/591 atomic regions from SNP 163852 to 164452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:26,952 DEBUG Processing 211/680 atomic regions from SNP 63088 to 63688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:27,103 DEBUG Processing 548/591 atomic regions from SNP 164152 to 164752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:27,239 DEBUG Processing 212/680 atomic regions from SNP 63388 to 63988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:27,378 DEBUG Processing 549/591 atomic regions from SNP 164452 to 165052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:27,580 DEBUG Processing 213/680 atomic regions from SNP 63688 to 64288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:27,742 DEBUG Processing 550/591 atomic regions from SNP 164752 to 165352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:28,018 DEBUG Processing 214/680 atomic regions from SNP 63988 to 64588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:28,168 DEBUG Processing 551/591 atomic regions from SNP 165052 to 165652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:28,276 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:46:28,278 DEBUG chr11: Signal quantile: 0.990. signal threshold: 9. Best RMSEA: 0.016 2025-01-31 09:46:28,375 DEBUG Processing 215/680 atomic regions from SNP 64288 to 64888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:28,420 DEBUG Processing 552/591 atomic regions from SNP 165352 to 165952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:28,670 DEBUG Processing 553/591 atomic regions from SNP 165652 to 166252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:28,689 DEBUG Processing 216/680 atomic regions from SNP 64588 to 65188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:29,008 DEBUG Processing 554/591 atomic regions from SNP 165952 to 166552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:29,058 DEBUG Processing 217/680 atomic regions from SNP 64888 to 65488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:29,248 DEBUG Processing 555/591 atomic regions from SNP 166252 to 166852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:29,299 DEBUG Processing 218/680 atomic regions from SNP 65188 to 65788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:29,453 DEBUG Processing 556/591 atomic regions from SNP 166552 to 167152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:29,527 DEBUG Processing 219/680 atomic regions from SNP 65488 to 66088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:29,646 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:46:29,648 DEBUG chr13: Signal quantile: 0.994. signal threshold: 9. Best RMSEA: 0.021 2025-01-31 09:46:29,741 DEBUG Processing 557/591 atomic regions from SNP 166852 to 167452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:29,831 DEBUG Processing 220/680 atomic regions from SNP 65788 to 66388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:29,992 DEBUG Processing 558/591 atomic regions from SNP 167152 to 167752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:30,132 DEBUG Processing 221/680 atomic regions from SNP 66088 to 66688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:30,242 DEBUG Processing 559/591 atomic regions from SNP 167452 to 168052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:30,385 DEBUG Processing 222/680 atomic regions from SNP 66388 to 66988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:30,538 DEBUG Processing 560/591 atomic regions from SNP 167752 to 168352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:30,728 DEBUG Processing 223/680 atomic regions from SNP 66688 to 67288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:30,914 DEBUG Processing 561/591 atomic regions from SNP 168052 to 168652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:31,031 DEBUG Processing 224/680 atomic regions from SNP 66988 to 67588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:31,142 DEBUG chr11 total SNP count: 204711 2025-01-31 09:46:31,143 DEBUG chr11 length: 122082543 2025-01-31 09:46:31,143 DEBUG ----------------------------------------- 2025-01-31 09:46:31,143 INFO Processing SNPs in chr11 2025-01-31 09:46:31,164 DEBUG Processing 562/591 atomic regions from SNP 168352 to 168952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:31,315 DEBUG Processing 225/680 atomic regions from SNP 67288 to 67888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:31,370 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 204711)] 2025-01-31 09:46:31,419 DEBUG Processing 563/591 atomic regions from SNP 168652 to 169252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:31,543 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:31,641 DEBUG Processing 226/680 atomic regions from SNP 67588 to 68188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:31,672 DEBUG Processing 564/591 atomic regions from SNP 168952 to 169552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:31,875 DEBUG Processing 227/680 atomic regions from SNP 67888 to 68488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:31,880 DEBUG Processing 565/591 atomic regions from SNP 169252 to 169852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:32,084 DEBUG Processing 566/591 atomic regions from SNP 169552 to 170152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:32,092 DEBUG Processing 228/680 atomic regions from SNP 68188 to 68788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:32,295 DEBUG Processing 567/591 atomic regions from SNP 169852 to 170452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:32,320 DEBUG Processing 229/680 atomic regions from SNP 68488 to 69088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:32,506 DEBUG Processing 568/591 atomic regions from SNP 170152 to 170752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:32,565 DEBUG Processing 230/680 atomic regions from SNP 68788 to 69388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:32,571 DEBUG chr13 total SNP count: 193295 2025-01-31 09:46:32,571 DEBUG chr13 length: 120421639 2025-01-31 09:46:32,571 DEBUG ----------------------------------------- 2025-01-31 09:46:32,571 INFO Processing SNPs in chr13 2025-01-31 09:46:32,706 DEBUG Processing 569/591 atomic regions from SNP 170452 to 171052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:32,770 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 193295)] 2025-01-31 09:46:32,802 DEBUG Processing 231/680 atomic regions from SNP 69088 to 69688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:32,897 DEBUG Processing 570/591 atomic regions from SNP 170752 to 171352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:32,906 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:33,033 DEBUG Processing 232/680 atomic regions from SNP 69388 to 69988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:33,105 DEBUG Processing 571/591 atomic regions from SNP 171052 to 171652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:33,253 DEBUG Processing 233/680 atomic regions from SNP 69688 to 70288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:33,319 DEBUG Processing 572/591 atomic regions from SNP 171352 to 171952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:33,472 DEBUG Processing 234/680 atomic regions from SNP 69988 to 70588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:33,529 DEBUG Processing 573/591 atomic regions from SNP 171652 to 172252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:33,688 DEBUG Processing 235/680 atomic regions from SNP 70288 to 70888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:33,726 DEBUG Processing 574/591 atomic regions from SNP 171952 to 172552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:33,905 DEBUG Processing 236/680 atomic regions from SNP 70588 to 71188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:33,924 DEBUG Processing 575/591 atomic regions from SNP 172252 to 172852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:34,122 DEBUG Processing 237/680 atomic regions from SNP 70888 to 71488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:34,124 DEBUG Processing 576/591 atomic regions from SNP 172552 to 173152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:34,326 DEBUG Processing 577/591 atomic regions from SNP 172852 to 173452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:34,345 DEBUG Processing 238/680 atomic regions from SNP 71188 to 71788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:34,522 DEBUG Processing 578/591 atomic regions from SNP 173152 to 173752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:34,566 DEBUG Processing 239/680 atomic regions from SNP 71488 to 72088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:34,719 DEBUG Processing 579/591 atomic regions from SNP 173452 to 174052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:34,786 DEBUG Processing 240/680 atomic regions from SNP 71788 to 72388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:34,916 DEBUG Processing 580/591 atomic regions from SNP 173752 to 174352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:35,000 DEBUG Processing 241/680 atomic regions from SNP 72088 to 72688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:35,111 DEBUG Processing 581/591 atomic regions from SNP 174052 to 174652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:35,220 DEBUG Processing 242/680 atomic regions from SNP 72388 to 72988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:35,305 DEBUG Processing 582/591 atomic regions from SNP 174352 to 174952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:35,437 DEBUG Processing 243/680 atomic regions from SNP 72688 to 73288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:35,509 DEBUG Processing 583/591 atomic regions from SNP 174652 to 175252 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:35,647 DEBUG Processing 244/680 atomic regions from SNP 72988 to 73588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:35,717 DEBUG Processing 584/591 atomic regions from SNP 174952 to 175552 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:35,853 DEBUG Processing 245/680 atomic regions from SNP 73288 to 73888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:35,919 DEBUG Processing 585/591 atomic regions from SNP 175252 to 175852 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:36,065 DEBUG Processing 246/680 atomic regions from SNP 73588 to 74188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:36,112 DEBUG Processing 586/591 atomic regions from SNP 175552 to 176152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:36,290 DEBUG Processing 247/680 atomic regions from SNP 73888 to 74488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:36,320 DEBUG Processing 587/591 atomic regions from SNP 175852 to 176452 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:36,500 DEBUG Processing 248/680 atomic regions from SNP 74188 to 74788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:36,529 DEBUG Processing 588/591 atomic regions from SNP 176152 to 176752 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:36,710 DEBUG Processing 249/680 atomic regions from SNP 74488 to 75088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:36,731 DEBUG Processing 589/591 atomic regions from SNP 176452 to 177052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:36,933 DEBUG Processing 250/680 atomic regions from SNP 74788 to 75388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:36,941 DEBUG Processing 590/591 atomic regions from SNP 176752 to 177352 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:37,149 DEBUG Processing 591/591 atomic regions from SNP 177052 to 177652 for chr14 (subchromosome 2 of 2). 2025-01-31 09:46:37,155 DEBUG Processing 251/680 atomic regions from SNP 75088 to 75688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:37,275 DEBUG Unique SNPs positions in subchromosome 2: 177653 2025-01-31 09:46:37,370 DEBUG Processing 252/680 atomic regions from SNP 75388 to 75988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:37,583 DEBUG Processing 253/680 atomic regions from SNP 75688 to 76288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:37,796 DEBUG Processing 254/680 atomic regions from SNP 75988 to 76588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:38,011 DEBUG Processing 255/680 atomic regions from SNP 76288 to 76888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:38,221 DEBUG Processing 256/680 atomic regions from SNP 76588 to 77188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:38,433 DEBUG Processing 257/680 atomic regions from SNP 76888 to 77488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:38,646 DEBUG Processing 258/680 atomic regions from SNP 77188 to 77788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:38,840 DEBUG Subchromosome time: 145.464228997007, subchromosome SNPs: 177653 2025-01-31 09:46:38,840 DEBUG Estimated BADs: [0.00, 0.68, 2.71, 0.68, 1.35, 0.34, 1.35, 4.06, 1.35, 0.17, 0.34, 0.68] SNP counts: [84, 19268, 3719, 13787, 13480, 7295, 14005, 2098, 42875, 18008, 38447, 4671] SNP IDs counts: [84, 19268, 3719, 13787, 13480, 7295, 14005, 2098, 42875, 18008, 38447, 4671] Critical gap: 658254bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.03Mbp], 4.92Mbp[0.92Mbp], 19.75Mbp, 21.72Mbp, 29.86Mbp, 37.44Mbp, 45.30Mbp, 54.49Mbp, 55.62Mbp, 80.26Mbp, 94.94Mbp, 121.76Mbp, 124.90Mbp] 2025-01-31 09:46:38,840 DEBUG chr14 time: 145.46474517299794 s 2025-01-31 09:46:38,865 DEBUG Processing 259/680 atomic regions from SNP 77488 to 78088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:38,955 DEBUG chr14: Fitting background model for 11 segments 2025-01-31 09:46:39,053 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:46:39,078 DEBUG Processing 260/680 atomic regions from SNP 77788 to 78388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:39,296 DEBUG Processing 261/680 atomic regions from SNP 78088 to 78688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:39,517 DEBUG Processing 262/680 atomic regions from SNP 78388 to 78988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:39,750 DEBUG Processing 263/680 atomic regions from SNP 78688 to 79288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:39,989 DEBUG Processing 264/680 atomic regions from SNP 78988 to 79588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:40,228 DEBUG Processing 265/680 atomic regions from SNP 79288 to 79888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:40,466 DEBUG Processing 266/680 atomic regions from SNP 79588 to 80188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:40,693 DEBUG Processing 267/680 atomic regions from SNP 79888 to 80488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:40,936 DEBUG Processing 268/680 atomic regions from SNP 80188 to 80788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:41,169 DEBUG Processing 269/680 atomic regions from SNP 80488 to 81088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:41,402 DEBUG Processing 270/680 atomic regions from SNP 80788 to 81388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:41,637 DEBUG Processing 271/680 atomic regions from SNP 81088 to 81688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:41,877 DEBUG Processing 272/680 atomic regions from SNP 81388 to 81988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:42,122 DEBUG Processing 273/680 atomic regions from SNP 81688 to 82288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:42,363 DEBUG Processing 274/680 atomic regions from SNP 81988 to 82588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:42,601 DEBUG Processing 275/680 atomic regions from SNP 82288 to 82888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:42,839 DEBUG Processing 276/680 atomic regions from SNP 82588 to 83188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:43,079 DEBUG Processing 277/680 atomic regions from SNP 82888 to 83488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:43,322 DEBUG Processing 278/680 atomic regions from SNP 83188 to 83788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:43,555 DEBUG Processing 279/680 atomic regions from SNP 83488 to 84088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:43,793 DEBUG Processing 280/680 atomic regions from SNP 83788 to 84388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:44,032 DEBUG Processing 281/680 atomic regions from SNP 84088 to 84688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:44,262 DEBUG Processing 282/680 atomic regions from SNP 84388 to 84988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:44,485 DEBUG Processing 283/680 atomic regions from SNP 84688 to 85288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:44,712 DEBUG Processing 284/680 atomic regions from SNP 84988 to 85588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:44,943 DEBUG Processing 285/680 atomic regions from SNP 85288 to 85888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:45,175 DEBUG Processing 286/680 atomic regions from SNP 85588 to 86188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:45,399 DEBUG Processing 287/680 atomic regions from SNP 85888 to 86488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:45,615 DEBUG Processing 288/680 atomic regions from SNP 86188 to 86788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:45,836 DEBUG Processing 289/680 atomic regions from SNP 86488 to 87088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:46,062 DEBUG Processing 290/680 atomic regions from SNP 86788 to 87388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:46,279 DEBUG Processing 291/680 atomic regions from SNP 87088 to 87688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:46,509 DEBUG Processing 292/680 atomic regions from SNP 87388 to 87988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:46,755 DEBUG Processing 293/680 atomic regions from SNP 87688 to 88288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:46,979 DEBUG Processing 294/680 atomic regions from SNP 87988 to 88588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:47,213 DEBUG Processing 295/680 atomic regions from SNP 88288 to 88888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:47,448 DEBUG Processing 296/680 atomic regions from SNP 88588 to 89188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:47,676 DEBUG Processing 297/680 atomic regions from SNP 88888 to 89488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:47,903 DEBUG Processing 298/680 atomic regions from SNP 89188 to 89788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:48,130 DEBUG Processing 299/680 atomic regions from SNP 89488 to 90088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:48,351 DEBUG Processing 300/680 atomic regions from SNP 89788 to 90388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:48,571 DEBUG Processing 301/680 atomic regions from SNP 90088 to 90688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:48,803 DEBUG Processing 302/680 atomic regions from SNP 90388 to 90988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:48,951 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:46:49,037 DEBUG Processing 303/680 atomic regions from SNP 90688 to 91288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:49,272 DEBUG Processing 304/680 atomic regions from SNP 90988 to 91588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:49,504 DEBUG Processing 305/680 atomic regions from SNP 91288 to 91888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:49,732 DEBUG Processing 306/680 atomic regions from SNP 91588 to 92188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:49,962 DEBUG Processing 307/680 atomic regions from SNP 91888 to 92488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:50,194 DEBUG Processing 308/680 atomic regions from SNP 92188 to 92788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:50,459 DEBUG Processing 309/680 atomic regions from SNP 92488 to 93088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:50,697 DEBUG Processing 310/680 atomic regions from SNP 92788 to 93388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:50,767 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:46:50,935 DEBUG Processing 311/680 atomic regions from SNP 93088 to 93688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:51,171 DEBUG Processing 312/680 atomic regions from SNP 93388 to 93988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:51,300 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:46:51,302 DEBUG chr12: Signal quantile: 0.995. signal threshold: 7. Best RMSEA: 0.028 2025-01-31 09:46:51,409 DEBUG Processing 313/680 atomic regions from SNP 93688 to 94288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:51,648 DEBUG Processing 314/680 atomic regions from SNP 93988 to 94588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:51,882 DEBUG Processing 315/680 atomic regions from SNP 94288 to 94888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:52,120 DEBUG Processing 316/680 atomic regions from SNP 94588 to 95188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:52,360 DEBUG Processing 317/680 atomic regions from SNP 94888 to 95488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:52,603 DEBUG Processing 318/680 atomic regions from SNP 95188 to 95788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:52,845 DEBUG Processing 319/680 atomic regions from SNP 95488 to 96088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:53,083 DEBUG Processing 320/680 atomic regions from SNP 95788 to 96388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:53,316 DEBUG Processing 321/680 atomic regions from SNP 96088 to 96688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:53,551 DEBUG Processing 322/680 atomic regions from SNP 96388 to 96988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:53,642 DEBUG chr12 total SNP count: 180203 2025-01-31 09:46:53,642 DEBUG chr12 length: 120129022 2025-01-31 09:46:53,642 DEBUG ----------------------------------------- 2025-01-31 09:46:53,642 INFO Processing SNPs in chr12 2025-01-31 09:46:53,781 DEBUG Processing 323/680 atomic regions from SNP 96688 to 97288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:53,827 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 180203)] 2025-01-31 09:46:53,954 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:54,009 DEBUG Processing 324/680 atomic regions from SNP 96988 to 97588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:54,250 DEBUG Processing 325/680 atomic regions from SNP 97288 to 97888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:54,486 DEBUG Processing 326/680 atomic regions from SNP 97588 to 98188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:54,715 DEBUG Processing 327/680 atomic regions from SNP 97888 to 98488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:54,938 DEBUG Processing 328/680 atomic regions from SNP 98188 to 98788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:55,159 DEBUG Processing 329/680 atomic regions from SNP 98488 to 99088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:55,387 DEBUG Processing 330/680 atomic regions from SNP 98788 to 99388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:55,619 DEBUG Processing 331/680 atomic regions from SNP 99088 to 99688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:55,852 DEBUG Processing 332/680 atomic regions from SNP 99388 to 99988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:56,074 DEBUG Processing 333/680 atomic regions from SNP 99688 to 100288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:56,300 DEBUG Processing 334/680 atomic regions from SNP 99988 to 100588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:56,301 DEBUG Segmenting atomic regions: 2025-01-31 09:46:56,390 DEBUG Processing 1/643 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:56,537 DEBUG Processing 335/680 atomic regions from SNP 100288 to 100888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:56,598 DEBUG Processing 2/643 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:56,639 DEBUG Segmenting atomic regions: 2025-01-31 09:46:56,733 DEBUG Processing 1/681 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:56,789 DEBUG Processing 336/680 atomic regions from SNP 100588 to 101188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:56,814 DEBUG Processing 3/643 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:56,966 DEBUG Processing 2/681 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:57,034 DEBUG Processing 4/643 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:57,041 DEBUG Processing 337/680 atomic regions from SNP 100888 to 101488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:57,184 DEBUG Processing 3/681 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:57,257 DEBUG Processing 5/643 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:57,276 DEBUG Processing 338/680 atomic regions from SNP 101188 to 101788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:57,411 DEBUG Processing 4/681 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:57,478 DEBUG Processing 6/643 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:57,506 DEBUG Processing 339/680 atomic regions from SNP 101488 to 102088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:57,636 DEBUG Processing 5/681 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:57,700 DEBUG Processing 7/643 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:57,735 DEBUG Processing 340/680 atomic regions from SNP 101788 to 102388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:57,859 DEBUG Processing 6/681 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:57,926 DEBUG Processing 8/643 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:57,979 DEBUG Processing 341/680 atomic regions from SNP 102088 to 102688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:58,080 DEBUG Processing 7/681 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:58,149 DEBUG Processing 9/643 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:58,220 DEBUG Processing 342/680 atomic regions from SNP 102388 to 102988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:58,297 DEBUG Processing 8/681 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:58,360 DEBUG Processing 10/643 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:58,456 DEBUG Processing 343/680 atomic regions from SNP 102688 to 103288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:58,523 DEBUG Processing 9/681 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:58,567 DEBUG Processing 11/643 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:58,708 DEBUG Processing 344/680 atomic regions from SNP 102988 to 103588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:58,748 DEBUG Processing 10/681 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:58,789 DEBUG Processing 12/643 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:58,935 DEBUG Processing 345/680 atomic regions from SNP 103288 to 103888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:58,963 DEBUG Processing 11/681 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:59,004 DEBUG Processing 13/643 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:59,180 DEBUG Processing 346/680 atomic regions from SNP 103588 to 104188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:59,186 DEBUG Processing 12/681 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:59,218 DEBUG Processing 14/643 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:59,423 DEBUG Processing 347/680 atomic regions from SNP 103888 to 104488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:59,426 DEBUG Processing 13/681 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:59,440 DEBUG Processing 15/643 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:59,519 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:46:59,521 DEBUG chr15: Signal quantile: 0.994. signal threshold: 10. Best RMSEA: 0.018 2025-01-31 09:46:59,666 DEBUG Processing 14/681 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:59,670 DEBUG Processing 348/680 atomic regions from SNP 104188 to 104788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:46:59,676 DEBUG Processing 16/643 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:59,894 DEBUG Processing 15/681 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:46:59,895 DEBUG Processing 17/643 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:46:59,901 DEBUG Processing 349/680 atomic regions from SNP 104488 to 105088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:00,108 DEBUG Processing 18/643 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:00,111 DEBUG Processing 16/681 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:00,128 DEBUG Processing 350/680 atomic regions from SNP 104788 to 105388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:00,328 DEBUG Processing 19/643 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:00,333 DEBUG Processing 17/681 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:00,362 DEBUG Processing 351/680 atomic regions from SNP 105088 to 105688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:00,490 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:47:00,492 DEBUG chr16: Signal quantile: 0.995. signal threshold: 8. Best RMSEA: 0.025 2025-01-31 09:47:00,545 DEBUG Processing 20/643 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:00,559 DEBUG Processing 18/681 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:00,595 DEBUG Processing 352/680 atomic regions from SNP 105388 to 105988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:00,765 DEBUG Processing 21/643 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:00,781 DEBUG Processing 19/681 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:00,831 DEBUG Processing 353/680 atomic regions from SNP 105688 to 106288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:00,989 DEBUG Processing 22/643 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:01,037 DEBUG Processing 20/681 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:01,055 DEBUG Processing 354/680 atomic regions from SNP 105988 to 106588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:01,222 DEBUG Processing 23/643 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:01,272 DEBUG Processing 21/681 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:01,288 DEBUG Processing 355/680 atomic regions from SNP 106288 to 106888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:01,441 DEBUG chr15 total SNP count: 168870 2025-01-31 09:47:01,441 DEBUG chr15 length: 104043685 2025-01-31 09:47:01,441 DEBUG ----------------------------------------- 2025-01-31 09:47:01,441 INFO Processing SNPs in chr15 2025-01-31 09:47:01,454 DEBUG Processing 24/643 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:01,514 DEBUG Processing 22/681 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:01,529 DEBUG Processing 356/680 atomic regions from SNP 106588 to 107188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:01,617 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 168870)] 2025-01-31 09:47:01,671 DEBUG Processing 25/643 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:01,738 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:01,738 DEBUG Processing 23/681 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:01,762 DEBUG Processing 357/680 atomic regions from SNP 106888 to 107488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:01,899 DEBUG Processing 26/643 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:01,951 DEBUG Processing 24/681 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:01,994 DEBUG Processing 358/680 atomic regions from SNP 107188 to 107788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:02,130 DEBUG Processing 27/643 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:02,176 DEBUG Processing 25/681 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:02,235 DEBUG Processing 359/680 atomic regions from SNP 107488 to 108088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:02,259 DEBUG chr16 total SNP count: 154357 2025-01-31 09:47:02,259 DEBUG chr16 length: 98207768 2025-01-31 09:47:02,259 DEBUG ----------------------------------------- 2025-01-31 09:47:02,259 INFO Processing SNPs in chr16 2025-01-31 09:47:02,352 DEBUG Processing 28/643 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:02,406 DEBUG Processing 26/681 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:02,419 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 154357)] 2025-01-31 09:47:02,476 DEBUG Processing 360/680 atomic regions from SNP 107788 to 108388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:02,529 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:02,567 DEBUG Processing 29/643 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:02,629 DEBUG Processing 27/681 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:02,717 DEBUG Processing 361/680 atomic regions from SNP 108088 to 108688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:02,792 DEBUG Processing 30/643 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:02,835 DEBUG Processing 28/681 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:02,944 DEBUG Processing 362/680 atomic regions from SNP 108388 to 108988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:03,017 DEBUG Processing 31/643 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:03,049 DEBUG Processing 29/681 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:03,169 DEBUG Processing 363/680 atomic regions from SNP 108688 to 109288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:03,239 DEBUG Processing 32/643 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:03,262 DEBUG Processing 30/681 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:03,400 DEBUG Processing 364/680 atomic regions from SNP 108988 to 109588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:03,458 DEBUG Processing 33/643 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:03,473 DEBUG Processing 31/681 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:03,627 DEBUG Processing 365/680 atomic regions from SNP 109288 to 109888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:03,682 DEBUG Processing 32/681 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:03,683 DEBUG Processing 34/643 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:03,850 DEBUG Processing 366/680 atomic regions from SNP 109588 to 110188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:03,901 DEBUG Processing 33/681 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:03,903 DEBUG Processing 35/643 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:04,079 DEBUG Processing 367/680 atomic regions from SNP 109888 to 110488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:04,116 DEBUG Processing 36/643 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:04,120 DEBUG Processing 34/681 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:04,309 DEBUG Processing 368/680 atomic regions from SNP 110188 to 110788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:04,332 DEBUG Processing 37/643 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:04,332 DEBUG Processing 35/681 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:04,535 DEBUG Processing 369/680 atomic regions from SNP 110488 to 111088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:04,540 DEBUG Processing 36/681 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:04,545 DEBUG Processing 38/643 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:04,755 DEBUG Processing 37/681 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:04,764 DEBUG Processing 39/643 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:04,769 DEBUG Processing 370/680 atomic regions from SNP 110788 to 111388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:04,975 DEBUG Processing 38/681 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:04,985 DEBUG Processing 40/643 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:05,005 DEBUG Processing 371/680 atomic regions from SNP 111088 to 111688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:05,189 DEBUG Processing 39/681 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:05,204 DEBUG Processing 41/643 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:05,235 DEBUG Processing 372/680 atomic regions from SNP 111388 to 111988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:05,393 DEBUG Processing 40/681 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:05,418 DEBUG Processing 42/643 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:05,464 DEBUG Processing 373/680 atomic regions from SNP 111688 to 112288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:05,598 DEBUG Processing 41/681 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:05,638 DEBUG Processing 43/643 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:05,697 DEBUG Processing 374/680 atomic regions from SNP 111988 to 112588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:05,813 DEBUG Processing 42/681 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:05,859 DEBUG Processing 44/643 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:05,939 DEBUG Processing 375/680 atomic regions from SNP 112288 to 112888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:06,028 DEBUG Processing 43/681 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:06,064 DEBUG Processing 45/643 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:06,164 DEBUG Processing 376/680 atomic regions from SNP 112588 to 113188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:06,237 DEBUG Processing 44/681 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:06,272 DEBUG Processing 46/643 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:06,394 DEBUG Processing 377/680 atomic regions from SNP 112888 to 113488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:06,443 DEBUG Processing 45/681 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:06,483 DEBUG Processing 47/643 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:06,629 DEBUG Processing 378/680 atomic regions from SNP 113188 to 113788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:06,662 DEBUG Processing 46/681 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:06,695 DEBUG Processing 48/643 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:06,865 DEBUG Processing 379/680 atomic regions from SNP 113488 to 114088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:06,883 DEBUG Processing 47/681 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:06,916 DEBUG Processing 49/643 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:07,084 DEBUG Processing 380/680 atomic regions from SNP 113788 to 114388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:07,100 DEBUG Processing 48/681 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:07,132 DEBUG Processing 50/643 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:07,304 DEBUG Processing 381/680 atomic regions from SNP 114088 to 114688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:07,307 DEBUG Processing 49/681 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:07,339 DEBUG Processing 51/643 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:07,522 DEBUG Processing 50/681 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:07,527 DEBUG Processing 382/680 atomic regions from SNP 114388 to 114988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:07,553 DEBUG Processing 52/643 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:07,733 DEBUG Processing 51/681 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:07,755 DEBUG Processing 383/680 atomic regions from SNP 114688 to 115288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:07,776 DEBUG Processing 53/643 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:07,948 DEBUG Processing 52/681 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:07,983 DEBUG Processing 384/680 atomic regions from SNP 114988 to 115588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:07,993 DEBUG Processing 54/643 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:08,164 DEBUG Processing 53/681 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:08,203 DEBUG Processing 55/643 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:08,205 DEBUG Processing 385/680 atomic regions from SNP 115288 to 115888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:08,376 DEBUG Processing 54/681 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:08,416 DEBUG Processing 56/643 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:08,430 DEBUG Processing 386/680 atomic regions from SNP 115588 to 116188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:08,583 DEBUG Processing 55/681 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:08,632 DEBUG Processing 57/643 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:08,662 DEBUG Processing 387/680 atomic regions from SNP 115888 to 116488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:08,796 DEBUG Processing 56/681 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:08,845 DEBUG Processing 58/643 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:08,885 DEBUG Processing 388/680 atomic regions from SNP 116188 to 116788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:09,017 DEBUG Processing 57/681 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:09,063 DEBUG Processing 59/643 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:09,117 DEBUG Processing 389/680 atomic regions from SNP 116488 to 117088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:09,235 DEBUG Processing 58/681 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:09,283 DEBUG Processing 60/643 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:09,350 DEBUG Processing 390/680 atomic regions from SNP 116788 to 117388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:09,446 DEBUG Processing 59/681 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:09,503 DEBUG Processing 61/643 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:09,585 DEBUG Processing 391/680 atomic regions from SNP 117088 to 117688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:09,657 DEBUG Processing 60/681 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:09,728 DEBUG Processing 62/643 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:09,819 DEBUG Processing 392/680 atomic regions from SNP 117388 to 117988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:09,874 DEBUG Processing 61/681 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:09,955 DEBUG Processing 63/643 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:10,059 DEBUG Processing 393/680 atomic regions from SNP 117688 to 118288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:10,094 DEBUG Processing 62/681 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:10,170 DEBUG Processing 64/643 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:10,299 DEBUG Processing 394/680 atomic regions from SNP 117988 to 118588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:10,314 DEBUG Processing 63/681 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:10,390 DEBUG Processing 65/643 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:10,526 DEBUG Processing 395/680 atomic regions from SNP 118288 to 118888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:10,527 DEBUG Processing 64/681 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:10,610 DEBUG Processing 66/643 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:10,739 DEBUG Processing 65/681 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:10,756 DEBUG Processing 396/680 atomic regions from SNP 118588 to 119188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:10,833 DEBUG Processing 67/643 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:10,954 DEBUG Processing 66/681 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:10,982 DEBUG Processing 397/680 atomic regions from SNP 118888 to 119488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:11,048 DEBUG Processing 68/643 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:11,177 DEBUG Processing 67/681 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:11,217 DEBUG Processing 398/680 atomic regions from SNP 119188 to 119788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:11,276 DEBUG Processing 69/643 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:11,405 DEBUG Processing 68/681 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:11,452 DEBUG Processing 399/680 atomic regions from SNP 119488 to 120088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:11,505 DEBUG Processing 70/643 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:11,629 DEBUG Processing 69/681 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:11,688 DEBUG Processing 400/680 atomic regions from SNP 119788 to 120388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:11,734 DEBUG Processing 71/643 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:11,847 DEBUG Processing 70/681 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:11,915 DEBUG Processing 401/680 atomic regions from SNP 120088 to 120688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:11,955 DEBUG Processing 72/643 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:12,069 DEBUG Processing 71/681 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:12,143 DEBUG Processing 402/680 atomic regions from SNP 120388 to 120988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:12,168 DEBUG Processing 73/643 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:12,293 DEBUG Processing 72/681 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:12,385 DEBUG Processing 403/680 atomic regions from SNP 120688 to 121288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:12,392 DEBUG Processing 74/643 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:12,509 DEBUG Processing 73/681 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:12,619 DEBUG Processing 75/643 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:12,626 DEBUG Processing 404/680 atomic regions from SNP 120988 to 121588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:12,718 DEBUG Processing 74/681 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:12,845 DEBUG Processing 76/643 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:12,869 DEBUG Processing 405/680 atomic regions from SNP 121288 to 121888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:12,934 DEBUG Processing 75/681 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:13,064 DEBUG Processing 77/643 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:13,104 DEBUG Processing 406/680 atomic regions from SNP 121588 to 122188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:13,145 DEBUG Processing 76/681 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:13,286 DEBUG Processing 78/643 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:13,343 DEBUG Processing 407/680 atomic regions from SNP 121888 to 122488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:13,359 DEBUG Processing 77/681 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:13,513 DEBUG Processing 79/643 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:13,581 DEBUG Processing 78/681 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:13,589 DEBUG Processing 408/680 atomic regions from SNP 122188 to 122788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:13,733 DEBUG Processing 80/643 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:13,797 DEBUG Processing 79/681 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:13,832 DEBUG Processing 409/680 atomic regions from SNP 122488 to 123088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:13,946 DEBUG Processing 81/643 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:14,002 DEBUG Processing 80/681 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:14,073 DEBUG Processing 410/680 atomic regions from SNP 122788 to 123388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:14,174 DEBUG Processing 82/643 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:14,210 DEBUG Processing 81/681 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:14,305 DEBUG Processing 411/680 atomic regions from SNP 123088 to 123688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:14,404 DEBUG Processing 83/643 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:14,426 DEBUG Processing 82/681 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:14,533 DEBUG Processing 412/680 atomic regions from SNP 123388 to 123988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:14,632 DEBUG Processing 84/643 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:14,648 DEBUG Processing 83/681 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:14,772 DEBUG Processing 413/680 atomic regions from SNP 123688 to 124288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:14,856 DEBUG Processing 85/643 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:14,867 DEBUG Processing 84/681 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:15,018 DEBUG Processing 414/680 atomic regions from SNP 123988 to 124588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:15,086 DEBUG Processing 86/643 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:15,090 DEBUG Processing 85/681 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:15,247 DEBUG Processing 415/680 atomic regions from SNP 124288 to 124888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:15,304 DEBUG Processing 86/681 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:15,307 DEBUG Processing 87/643 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:15,477 DEBUG Processing 416/680 atomic regions from SNP 124588 to 125188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:15,519 DEBUG Processing 87/681 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:15,531 DEBUG Processing 88/643 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:15,702 DEBUG Segmenting atomic regions: 2025-01-31 09:47:15,708 DEBUG Processing 417/680 atomic regions from SNP 124888 to 125488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:15,733 DEBUG Processing 88/681 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:15,750 DEBUG Processing 89/643 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:15,784 DEBUG Processing 1/599 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:15,947 DEBUG Processing 89/681 atomic regions from SNP 26488 to 27089 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:15,951 DEBUG Processing 418/680 atomic regions from SNP 125188 to 125788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:15,979 DEBUG Processing 90/643 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:16,016 DEBUG Processing 2/599 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:16,160 DEBUG Processing 90/681 atomic regions from SNP 26789 to 27390 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:16,195 DEBUG Processing 419/680 atomic regions from SNP 125488 to 126088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:16,211 DEBUG Processing 91/643 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:16,250 DEBUG Processing 3/599 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:16,371 DEBUG Processing 91/681 atomic regions from SNP 27090 to 27691 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:16,440 DEBUG Processing 92/643 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:16,441 DEBUG Processing 420/680 atomic regions from SNP 125788 to 126388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:16,486 DEBUG Processing 4/599 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:16,590 DEBUG Processing 92/681 atomic regions from SNP 27391 to 27992 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:16,670 DEBUG Processing 93/643 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:16,687 DEBUG Processing 421/680 atomic regions from SNP 126088 to 126688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:16,720 DEBUG Processing 5/599 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:16,809 DEBUG Processing 93/681 atomic regions from SNP 27692 to 28293 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:16,921 DEBUG Processing 94/643 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:16,938 DEBUG Processing 422/680 atomic regions from SNP 126388 to 126988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:16,956 DEBUG Processing 6/599 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:17,026 DEBUG Processing 94/681 atomic regions from SNP 27993 to 28594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:17,158 DEBUG Processing 95/643 atomic regions from SNP 28294 to 28894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:17,193 DEBUG Processing 423/680 atomic regions from SNP 126688 to 127288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:17,196 DEBUG Processing 7/599 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:17,251 DEBUG Processing 95/681 atomic regions from SNP 28294 to 28895 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:17,394 DEBUG Processing 96/643 atomic regions from SNP 28594 to 29194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:17,430 DEBUG Processing 8/599 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:17,438 DEBUG Processing 424/680 atomic regions from SNP 126988 to 127588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:17,478 DEBUG Processing 96/681 atomic regions from SNP 28595 to 29196 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:17,651 DEBUG Processing 97/643 atomic regions from SNP 28894 to 29494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:17,664 DEBUG Processing 9/599 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:17,684 DEBUG Processing 425/680 atomic regions from SNP 127288 to 127888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:17,702 DEBUG Processing 97/681 atomic regions from SNP 28896 to 29497 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:17,899 DEBUG Processing 10/599 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:17,920 DEBUG Processing 98/643 atomic regions from SNP 29194 to 29794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:17,920 DEBUG Processing 98/681 atomic regions from SNP 29197 to 29798 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:17,936 DEBUG Processing 426/680 atomic regions from SNP 127588 to 128188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:18,132 DEBUG Processing 11/599 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:18,142 DEBUG Processing 99/681 atomic regions from SNP 29498 to 30099 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:18,181 DEBUG Processing 99/643 atomic regions from SNP 29494 to 30094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:18,191 DEBUG Processing 427/680 atomic regions from SNP 127888 to 128488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:18,360 DEBUG Processing 100/681 atomic regions from SNP 29799 to 30400 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:18,367 DEBUG Processing 12/599 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:18,414 DEBUG Processing 100/643 atomic regions from SNP 29794 to 30394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:18,437 DEBUG Processing 428/680 atomic regions from SNP 128188 to 128788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:18,588 DEBUG Processing 101/681 atomic regions from SNP 30100 to 30701 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:18,608 DEBUG Processing 13/599 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:18,653 DEBUG Processing 101/643 atomic regions from SNP 30094 to 30694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:18,684 DEBUG Processing 429/680 atomic regions from SNP 128488 to 129088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:18,811 DEBUG Processing 102/681 atomic regions from SNP 30401 to 31002 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:18,846 DEBUG Processing 14/599 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:18,894 DEBUG Processing 102/643 atomic regions from SNP 30394 to 30994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:18,932 DEBUG Processing 430/680 atomic regions from SNP 128788 to 129388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:19,026 DEBUG Processing 103/681 atomic regions from SNP 30702 to 31303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:19,060 DEBUG Processing 15/599 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:19,120 DEBUG Processing 103/643 atomic regions from SNP 30694 to 31294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:19,175 DEBUG Processing 431/680 atomic regions from SNP 129088 to 129688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:19,253 DEBUG Processing 104/681 atomic regions from SNP 31003 to 31604 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:19,279 DEBUG Processing 16/599 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:19,372 DEBUG Processing 104/643 atomic regions from SNP 30994 to 31594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:19,414 DEBUG Processing 432/680 atomic regions from SNP 129388 to 129988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:19,482 DEBUG Processing 105/681 atomic regions from SNP 31304 to 31905 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:19,510 DEBUG Processing 17/599 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:19,632 DEBUG Processing 105/643 atomic regions from SNP 31294 to 31894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:19,647 DEBUG Processing 433/680 atomic regions from SNP 129688 to 130288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:19,701 DEBUG Processing 106/681 atomic regions from SNP 31605 to 32206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:19,734 DEBUG Processing 18/599 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:19,888 DEBUG Processing 434/680 atomic regions from SNP 129988 to 130588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:19,896 DEBUG Processing 106/643 atomic regions from SNP 31594 to 32194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:19,922 DEBUG Processing 107/681 atomic regions from SNP 31906 to 32507 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:19,964 DEBUG Processing 19/599 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:20,138 DEBUG Processing 435/680 atomic regions from SNP 130288 to 130888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:20,145 DEBUG Processing 108/681 atomic regions from SNP 32207 to 32808 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:20,155 DEBUG Processing 107/643 atomic regions from SNP 31894 to 32494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:20,207 DEBUG Processing 20/599 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:20,365 DEBUG Processing 109/681 atomic regions from SNP 32508 to 33109 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:20,388 DEBUG Processing 436/680 atomic regions from SNP 130588 to 131188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:20,389 DEBUG Processing 108/643 atomic regions from SNP 32194 to 32794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:20,445 DEBUG Processing 21/599 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:20,583 DEBUG Processing 110/681 atomic regions from SNP 32809 to 33410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:20,606 DEBUG Processing 109/643 atomic regions from SNP 32494 to 33094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:20,618 DEBUG Processing 437/680 atomic regions from SNP 130888 to 131488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:20,665 DEBUG Processing 22/599 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:20,813 DEBUG Processing 111/681 atomic regions from SNP 33110 to 33710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:20,841 DEBUG Processing 110/643 atomic regions from SNP 32794 to 33394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:20,862 DEBUG Processing 438/680 atomic regions from SNP 131188 to 131788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:20,888 DEBUG Processing 23/599 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:21,037 DEBUG Processing 112/681 atomic regions from SNP 33410 to 34010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:21,076 DEBUG Processing 111/643 atomic regions from SNP 33094 to 33694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:21,111 DEBUG Processing 439/680 atomic regions from SNP 131488 to 132088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:21,116 DEBUG Processing 24/599 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:21,254 DEBUG Processing 113/681 atomic regions from SNP 33710 to 34310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:21,300 DEBUG Processing 112/643 atomic regions from SNP 33394 to 33994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:21,341 DEBUG Processing 25/599 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:21,350 DEBUG Processing 440/680 atomic regions from SNP 131788 to 132388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:21,470 DEBUG Processing 114/681 atomic regions from SNP 34010 to 34610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:21,517 DEBUG Processing 113/643 atomic regions from SNP 33694 to 34294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:21,553 DEBUG Segmenting atomic regions: 2025-01-31 09:47:21,555 DEBUG Processing 26/599 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:21,578 DEBUG Processing 441/680 atomic regions from SNP 132088 to 132688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:21,624 DEBUG Processing 1/513 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:21,692 DEBUG Processing 115/681 atomic regions from SNP 34310 to 34910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:21,747 DEBUG Processing 114/643 atomic regions from SNP 33994 to 34594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:21,775 DEBUG Processing 27/599 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:21,808 DEBUG Processing 442/680 atomic regions from SNP 132388 to 132988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:21,808 DEBUG Processing 2/513 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:21,907 DEBUG Processing 116/681 atomic regions from SNP 34610 to 35210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:21,977 DEBUG Processing 115/643 atomic regions from SNP 34294 to 34894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:22,004 DEBUG Processing 28/599 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:22,006 DEBUG Processing 3/513 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:22,046 DEBUG Processing 443/680 atomic regions from SNP 132688 to 133288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:22,118 DEBUG Processing 117/681 atomic regions from SNP 34910 to 35510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:22,193 DEBUG Processing 116/643 atomic regions from SNP 34594 to 35194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:22,195 DEBUG Processing 4/513 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:22,221 DEBUG Processing 29/599 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:22,281 DEBUG Processing 444/680 atomic regions from SNP 132988 to 133588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:22,334 DEBUG Processing 118/681 atomic regions from SNP 35210 to 35810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:22,381 DEBUG Processing 5/513 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:22,404 DEBUG Processing 117/643 atomic regions from SNP 34894 to 35494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:22,433 DEBUG Processing 30/599 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:22,518 DEBUG Processing 445/680 atomic regions from SNP 133288 to 133888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:22,554 DEBUG Processing 119/681 atomic regions from SNP 35510 to 36110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:22,571 DEBUG Segmenting atomic regions: 2025-01-31 09:47:22,580 DEBUG Processing 6/513 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:22,630 DEBUG Processing 118/643 atomic regions from SNP 35194 to 35794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:22,648 DEBUG Processing 1/561 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:22,653 DEBUG Processing 31/599 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:22,752 DEBUG Processing 446/680 atomic regions from SNP 133588 to 134188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:22,768 DEBUG Processing 120/681 atomic regions from SNP 35810 to 36410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:22,779 DEBUG Processing 7/513 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:22,856 DEBUG Processing 2/561 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:22,857 DEBUG Processing 119/643 atomic regions from SNP 35494 to 36094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:22,882 DEBUG Processing 32/599 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:22,986 DEBUG Processing 121/681 atomic regions from SNP 36110 to 36710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:22,988 DEBUG Processing 447/680 atomic regions from SNP 133888 to 134488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:22,994 DEBUG Processing 8/513 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:23,055 DEBUG Processing 3/561 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:23,078 DEBUG Processing 120/643 atomic regions from SNP 35794 to 36394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:23,107 DEBUG Processing 33/599 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:23,209 DEBUG Processing 122/681 atomic regions from SNP 36410 to 37010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:23,210 DEBUG Processing 9/513 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:23,234 DEBUG Processing 448/680 atomic regions from SNP 134188 to 134788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:23,261 DEBUG Processing 4/561 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:23,309 DEBUG Processing 121/643 atomic regions from SNP 36094 to 36694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:23,334 DEBUG Processing 34/599 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:23,431 DEBUG Processing 10/513 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:23,434 DEBUG Processing 123/681 atomic regions from SNP 36710 to 37310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:23,467 DEBUG Processing 5/561 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:23,486 DEBUG Processing 449/680 atomic regions from SNP 134488 to 135088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:23,548 DEBUG Processing 122/643 atomic regions from SNP 36394 to 36994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:23,570 DEBUG Processing 35/599 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:23,640 DEBUG Processing 11/513 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:23,659 DEBUG Processing 124/681 atomic regions from SNP 37010 to 37610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:23,671 DEBUG Processing 6/561 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:23,732 DEBUG Processing 450/680 atomic regions from SNP 134788 to 135388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:23,791 DEBUG Processing 123/643 atomic regions from SNP 36694 to 37294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:23,809 DEBUG Processing 36/599 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:23,870 DEBUG Processing 12/513 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:23,884 DEBUG Processing 7/561 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:23,891 DEBUG Processing 125/681 atomic regions from SNP 37310 to 37910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:23,972 DEBUG Processing 451/680 atomic regions from SNP 135088 to 135688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:24,020 DEBUG Processing 124/643 atomic regions from SNP 36994 to 37594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:24,035 DEBUG Processing 37/599 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:24,074 DEBUG Processing 13/513 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:24,098 DEBUG Processing 8/561 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:24,124 DEBUG Processing 126/681 atomic regions from SNP 37610 to 38210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:24,218 DEBUG Processing 452/680 atomic regions from SNP 135388 to 135988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:24,257 DEBUG Processing 125/643 atomic regions from SNP 37294 to 37894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:24,267 DEBUG Processing 38/599 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:24,272 DEBUG Processing 14/513 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:24,307 DEBUG Processing 9/561 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:24,350 DEBUG Processing 127/681 atomic regions from SNP 37910 to 38510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:24,468 DEBUG Processing 453/680 atomic regions from SNP 135688 to 136288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:24,470 DEBUG Processing 15/513 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:24,497 DEBUG Processing 126/643 atomic regions from SNP 37594 to 38194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:24,505 DEBUG Processing 39/599 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:24,516 DEBUG Processing 10/561 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:24,572 DEBUG Processing 128/681 atomic regions from SNP 38210 to 38810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:24,661 DEBUG Processing 16/513 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:24,715 DEBUG Processing 454/680 atomic regions from SNP 135988 to 136588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:24,725 DEBUG Processing 11/561 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:24,735 DEBUG Processing 127/643 atomic regions from SNP 37894 to 38494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:24,744 DEBUG Processing 40/599 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:24,797 DEBUG Processing 129/681 atomic regions from SNP 38510 to 39110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:24,850 DEBUG Processing 17/513 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:24,950 DEBUG Processing 12/561 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:24,959 DEBUG Processing 455/680 atomic regions from SNP 136288 to 136888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:24,970 DEBUG Processing 128/643 atomic regions from SNP 38194 to 38794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:24,973 DEBUG Processing 41/599 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:25,020 DEBUG Processing 130/681 atomic regions from SNP 38810 to 39410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:25,049 DEBUG Processing 18/513 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:25,171 DEBUG Processing 13/561 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:25,203 DEBUG Processing 456/680 atomic regions from SNP 136588 to 137188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:25,205 DEBUG Processing 129/643 atomic regions from SNP 38494 to 39094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:25,207 DEBUG Processing 42/599 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:25,238 DEBUG Processing 131/681 atomic regions from SNP 39110 to 39710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:25,241 DEBUG Processing 19/513 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:25,380 DEBUG Processing 14/561 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:25,441 DEBUG Processing 20/513 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:25,445 DEBUG Processing 43/599 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:25,446 DEBUG Processing 130/643 atomic regions from SNP 38794 to 39394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:25,454 DEBUG Processing 457/680 atomic regions from SNP 136888 to 137488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:25,463 DEBUG Processing 132/681 atomic regions from SNP 39410 to 40010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:25,585 DEBUG Processing 15/561 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:25,644 DEBUG Processing 21/513 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:25,684 DEBUG Processing 44/599 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:25,688 DEBUG Processing 131/643 atomic regions from SNP 39094 to 39694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:25,691 DEBUG Processing 133/681 atomic regions from SNP 39710 to 40310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:25,707 DEBUG Processing 458/680 atomic regions from SNP 137188 to 137788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:25,782 DEBUG Processing 16/561 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:25,839 DEBUG Processing 22/513 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:25,917 DEBUG Processing 134/681 atomic regions from SNP 40010 to 40610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:25,922 DEBUG Processing 45/599 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:25,930 DEBUG Processing 132/643 atomic regions from SNP 39394 to 39994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:25,955 DEBUG Processing 459/680 atomic regions from SNP 137488 to 138088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:25,988 DEBUG Processing 17/561 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:26,026 DEBUG Processing 23/513 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:26,137 DEBUG Processing 135/681 atomic regions from SNP 40310 to 40910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:26,163 DEBUG Processing 46/599 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:26,175 DEBUG Processing 133/643 atomic regions from SNP 39694 to 40294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:26,201 DEBUG Processing 18/561 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:26,203 DEBUG Processing 460/680 atomic regions from SNP 137788 to 138388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:26,224 DEBUG Processing 24/513 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:26,351 DEBUG Processing 136/681 atomic regions from SNP 40610 to 41210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:26,404 DEBUG Processing 47/599 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:26,414 DEBUG Processing 19/561 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:26,422 DEBUG Processing 134/643 atomic regions from SNP 39994 to 40594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:26,423 DEBUG Processing 25/513 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:26,458 DEBUG Processing 461/680 atomic regions from SNP 138088 to 138688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:26,569 DEBUG Processing 137/681 atomic regions from SNP 40910 to 41510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:26,617 DEBUG Processing 26/513 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:26,619 DEBUG Processing 20/561 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:26,641 DEBUG Processing 48/599 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:26,663 DEBUG Processing 135/643 atomic regions from SNP 40294 to 40894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:26,708 DEBUG Processing 462/680 atomic regions from SNP 138388 to 138988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:26,796 DEBUG Processing 138/681 atomic regions from SNP 41210 to 41810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:26,815 DEBUG Processing 27/513 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:26,852 DEBUG Processing 21/561 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:26,879 DEBUG Processing 49/599 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:26,900 DEBUG Processing 136/643 atomic regions from SNP 40594 to 41194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:26,959 DEBUG Processing 463/680 atomic regions from SNP 138688 to 139288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:27,013 DEBUG Processing 28/513 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:27,019 DEBUG Processing 139/681 atomic regions from SNP 41510 to 42110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:27,077 DEBUG Processing 22/561 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:27,109 DEBUG Processing 50/599 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:27,141 DEBUG Processing 137/643 atomic regions from SNP 40894 to 41494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:27,213 DEBUG Processing 464/680 atomic regions from SNP 138988 to 139588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:27,213 DEBUG Processing 29/513 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:27,246 DEBUG Processing 140/681 atomic regions from SNP 41810 to 42410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:27,286 DEBUG Processing 23/561 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:27,334 DEBUG Processing 51/599 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:27,372 DEBUG Processing 138/643 atomic regions from SNP 41194 to 41794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:27,410 DEBUG Processing 30/513 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:27,474 DEBUG Processing 465/680 atomic regions from SNP 139288 to 139888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:27,478 DEBUG Processing 141/681 atomic regions from SNP 42110 to 42710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:27,505 DEBUG Processing 24/561 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:27,572 DEBUG Processing 52/599 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:27,603 DEBUG Processing 139/643 atomic regions from SNP 41494 to 42094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:27,609 DEBUG Processing 31/513 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:27,703 DEBUG Processing 142/681 atomic regions from SNP 42410 to 43010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:27,718 DEBUG Processing 25/561 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:27,727 DEBUG Processing 466/680 atomic regions from SNP 139588 to 140188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:27,803 DEBUG Processing 32/513 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:27,813 DEBUG Processing 53/599 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:27,839 DEBUG Processing 140/643 atomic regions from SNP 41794 to 42394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:27,915 DEBUG Processing 143/681 atomic regions from SNP 42710 to 43310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:27,919 DEBUG Processing 26/561 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:27,968 DEBUG Processing 467/680 atomic regions from SNP 139888 to 140488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:28,005 DEBUG Processing 33/513 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:28,048 DEBUG Processing 54/599 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:28,078 DEBUG Processing 141/643 atomic regions from SNP 42094 to 42694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:28,123 DEBUG Processing 27/561 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:28,132 DEBUG Processing 144/681 atomic regions from SNP 43010 to 43610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:28,199 DEBUG Processing 34/513 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:28,211 DEBUG Processing 468/680 atomic regions from SNP 140188 to 140788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:28,294 DEBUG Processing 55/599 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:28,328 DEBUG Processing 142/643 atomic regions from SNP 42394 to 42994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:28,339 DEBUG Processing 28/561 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:28,361 DEBUG Processing 145/681 atomic regions from SNP 43310 to 43910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:28,393 DEBUG Processing 35/513 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:28,450 DEBUG Processing 469/680 atomic regions from SNP 140488 to 141088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:28,539 DEBUG Processing 56/599 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:28,563 DEBUG Processing 29/561 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:28,577 DEBUG Processing 143/643 atomic regions from SNP 42694 to 43294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:28,595 DEBUG Processing 146/681 atomic regions from SNP 43610 to 44210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:28,602 DEBUG Processing 36/513 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:28,697 DEBUG Processing 470/680 atomic regions from SNP 140788 to 141388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:28,778 DEBUG Processing 57/599 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:28,799 DEBUG Processing 30/561 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:28,809 DEBUG Processing 37/513 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:28,826 DEBUG Processing 147/681 atomic regions from SNP 43910 to 44510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:28,826 DEBUG Processing 144/643 atomic regions from SNP 42994 to 43594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:28,945 DEBUG Processing 471/680 atomic regions from SNP 141088 to 141688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:28,994 DEBUG Processing 38/513 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:29,002 DEBUG Processing 58/599 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:29,010 DEBUG Processing 31/561 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:29,039 DEBUG Processing 148/681 atomic regions from SNP 44210 to 44810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:29,059 DEBUG Processing 145/643 atomic regions from SNP 43294 to 43894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:29,189 DEBUG Processing 472/680 atomic regions from SNP 141388 to 141988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:29,191 DEBUG Processing 39/513 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:29,227 DEBUG Processing 59/599 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:29,240 DEBUG Processing 32/561 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:29,252 DEBUG Processing 149/681 atomic regions from SNP 44510 to 45110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:29,286 DEBUG Processing 146/643 atomic regions from SNP 43594 to 44194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:29,396 DEBUG Processing 40/513 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:29,441 DEBUG Processing 473/680 atomic regions from SNP 141688 to 142288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:29,460 DEBUG Processing 60/599 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:29,473 DEBUG Processing 150/681 atomic regions from SNP 44810 to 45410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:29,476 DEBUG Processing 33/561 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:29,517 DEBUG Processing 147/643 atomic regions from SNP 43894 to 44494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:29,592 DEBUG Processing 41/513 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:29,698 DEBUG Processing 61/599 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:29,700 DEBUG Processing 474/680 atomic regions from SNP 141988 to 142588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:29,702 DEBUG Processing 151/681 atomic regions from SNP 45110 to 45710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:29,706 DEBUG Processing 34/561 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:29,750 DEBUG Processing 148/643 atomic regions from SNP 44194 to 44794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:29,783 DEBUG Processing 42/513 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:29,924 DEBUG Processing 152/681 atomic regions from SNP 45410 to 46010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:29,931 DEBUG Processing 35/561 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:29,935 DEBUG Processing 62/599 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:29,953 DEBUG Processing 475/680 atomic regions from SNP 142288 to 142888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:29,983 DEBUG Processing 43/513 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:29,989 DEBUG Processing 149/643 atomic regions from SNP 44494 to 45094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:30,145 DEBUG Processing 153/681 atomic regions from SNP 45710 to 46310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:30,155 DEBUG Processing 36/561 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:30,169 DEBUG Processing 63/599 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:30,190 DEBUG Processing 44/513 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:30,201 DEBUG Processing 476/680 atomic regions from SNP 142588 to 143188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:30,223 DEBUG Processing 150/643 atomic regions from SNP 44794 to 45394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:30,361 DEBUG Processing 37/561 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:30,375 DEBUG Processing 154/681 atomic regions from SNP 46010 to 46610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:30,382 DEBUG Processing 45/513 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:30,391 DEBUG Processing 64/599 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:30,444 DEBUG Processing 477/680 atomic regions from SNP 142888 to 143488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:30,457 DEBUG Processing 151/643 atomic regions from SNP 45094 to 45694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:30,574 DEBUG Processing 46/513 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:30,576 DEBUG Processing 38/561 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:30,593 DEBUG Processing 155/681 atomic regions from SNP 46310 to 46910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:30,610 DEBUG Processing 65/599 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:30,689 DEBUG Processing 478/680 atomic regions from SNP 143188 to 143788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:30,690 DEBUG Processing 152/643 atomic regions from SNP 45394 to 45994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:30,768 DEBUG Processing 47/513 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:30,786 DEBUG Processing 39/561 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:30,813 DEBUG Processing 156/681 atomic regions from SNP 46610 to 47210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:30,825 DEBUG Processing 66/599 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:30,920 DEBUG Processing 153/643 atomic regions from SNP 45694 to 46294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:30,933 DEBUG Processing 479/680 atomic regions from SNP 143488 to 144088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:30,961 DEBUG Processing 48/513 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:30,987 DEBUG Processing 40/561 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:31,032 DEBUG Processing 157/681 atomic regions from SNP 46910 to 47510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:31,042 DEBUG Processing 67/599 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:31,153 DEBUG Processing 154/643 atomic regions from SNP 45994 to 46594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:31,157 DEBUG Processing 49/513 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:31,178 DEBUG Processing 480/680 atomic regions from SNP 143788 to 144388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:31,191 DEBUG Processing 41/561 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:31,251 DEBUG Processing 158/681 atomic regions from SNP 47210 to 47810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:31,264 DEBUG Processing 68/599 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:31,345 DEBUG Processing 50/513 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:31,377 DEBUG Processing 155/643 atomic regions from SNP 46294 to 46894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:31,391 DEBUG Processing 42/561 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:31,419 DEBUG Processing 481/680 atomic regions from SNP 144088 to 144688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:31,474 DEBUG Processing 159/681 atomic regions from SNP 47510 to 48110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:31,493 DEBUG Processing 69/599 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:31,532 DEBUG Processing 51/513 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:31,598 DEBUG Processing 156/643 atomic regions from SNP 46594 to 47194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:31,600 DEBUG Processing 43/561 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:31,657 DEBUG Processing 482/680 atomic regions from SNP 144388 to 144988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:31,695 DEBUG Processing 160/681 atomic regions from SNP 47810 to 48410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:31,725 DEBUG Processing 70/599 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:31,728 DEBUG Processing 52/513 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:31,822 DEBUG Processing 44/561 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:31,824 DEBUG Processing 157/643 atomic regions from SNP 46894 to 47494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:31,892 DEBUG Processing 483/680 atomic regions from SNP 144688 to 145288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:31,912 DEBUG Processing 161/681 atomic regions from SNP 48110 to 48710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:31,924 DEBUG Processing 53/513 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:31,952 DEBUG Processing 71/599 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:32,025 DEBUG Processing 45/561 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:32,059 DEBUG Processing 158/643 atomic regions from SNP 47194 to 47794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:32,120 DEBUG Processing 54/513 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:32,132 DEBUG Processing 484/680 atomic regions from SNP 144988 to 145588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:32,135 DEBUG Processing 162/681 atomic regions from SNP 48410 to 49010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:32,175 DEBUG Processing 72/599 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:32,243 DEBUG Processing 46/561 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:32,287 DEBUG Processing 159/643 atomic regions from SNP 47494 to 48094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:32,312 DEBUG Processing 55/513 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:32,350 DEBUG Processing 163/681 atomic regions from SNP 48710 to 49310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:32,366 DEBUG Processing 485/680 atomic regions from SNP 145288 to 145888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:32,393 DEBUG Processing 73/599 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:32,457 DEBUG Processing 47/561 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:32,513 DEBUG Processing 56/513 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:32,517 DEBUG Processing 160/643 atomic regions from SNP 47794 to 48394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:32,570 DEBUG Processing 164/681 atomic regions from SNP 49010 to 49610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:32,601 DEBUG Processing 486/680 atomic regions from SNP 145588 to 146188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:32,614 DEBUG Processing 74/599 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:32,646 DEBUG Processing 48/561 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:32,703 DEBUG Processing 57/513 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:32,750 DEBUG Processing 161/643 atomic regions from SNP 48094 to 48694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:32,793 DEBUG Processing 165/681 atomic regions from SNP 49310 to 49910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:32,830 DEBUG Processing 75/599 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:32,838 DEBUG Processing 487/680 atomic regions from SNP 145888 to 146488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:32,867 DEBUG Processing 49/561 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:32,887 DEBUG Processing 58/513 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:32,983 DEBUG Processing 162/643 atomic regions from SNP 48394 to 48994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:33,013 DEBUG Processing 166/681 atomic regions from SNP 49610 to 50210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:33,062 DEBUG Processing 76/599 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:33,082 DEBUG Processing 50/561 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:33,083 DEBUG Processing 59/513 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:33,084 DEBUG Processing 488/680 atomic regions from SNP 146188 to 146788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:33,218 DEBUG Processing 163/643 atomic regions from SNP 48694 to 49294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:33,227 DEBUG Processing 167/681 atomic regions from SNP 49910 to 50510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:33,280 DEBUG Processing 60/513 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:33,287 DEBUG Processing 51/561 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:33,296 DEBUG Processing 77/599 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:33,332 DEBUG Processing 489/680 atomic regions from SNP 146488 to 147088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:33,447 DEBUG Processing 168/681 atomic regions from SNP 50210 to 50810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:33,450 DEBUG Processing 164/643 atomic regions from SNP 48994 to 49594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:33,471 DEBUG Processing 61/513 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:33,498 DEBUG Processing 52/561 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:33,517 DEBUG Processing 78/599 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:33,570 DEBUG Processing 490/680 atomic regions from SNP 146788 to 147388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:33,669 DEBUG Processing 62/513 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:33,670 DEBUG Processing 169/681 atomic regions from SNP 50510 to 51110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:33,681 DEBUG Processing 165/643 atomic regions from SNP 49294 to 49894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:33,734 DEBUG Processing 53/561 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:33,737 DEBUG Processing 79/599 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:33,802 DEBUG Processing 491/680 atomic regions from SNP 147088 to 147688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:33,877 DEBUG Processing 63/513 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:33,897 DEBUG Processing 170/681 atomic regions from SNP 50810 to 51410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:33,915 DEBUG Processing 166/643 atomic regions from SNP 49594 to 50194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:33,966 DEBUG Processing 80/599 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:33,979 DEBUG Processing 54/561 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:34,038 DEBUG Processing 492/680 atomic regions from SNP 147388 to 147988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:34,111 DEBUG Processing 64/513 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:34,113 DEBUG Processing 171/681 atomic regions from SNP 51110 to 51710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:34,144 DEBUG Processing 167/643 atomic regions from SNP 49894 to 50494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:34,191 DEBUG Processing 81/599 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:34,215 DEBUG Processing 55/561 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:34,280 DEBUG Processing 493/680 atomic regions from SNP 147688 to 148288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:34,308 DEBUG Processing 65/513 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:34,337 DEBUG Processing 172/681 atomic regions from SNP 51410 to 52010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:34,374 DEBUG Processing 168/643 atomic regions from SNP 50194 to 50794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:34,413 DEBUG Processing 82/599 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:34,432 DEBUG Processing 56/561 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:34,499 DEBUG Processing 66/513 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:34,516 DEBUG Processing 494/680 atomic regions from SNP 147988 to 148588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:34,560 DEBUG Processing 173/681 atomic regions from SNP 51710 to 52310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:34,608 DEBUG Processing 169/643 atomic regions from SNP 50494 to 51094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:34,639 DEBUG Processing 83/599 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:34,651 DEBUG Processing 57/561 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:34,683 DEBUG Processing 67/513 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:34,746 DEBUG Processing 495/680 atomic regions from SNP 148288 to 148888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:34,776 DEBUG Processing 174/681 atomic regions from SNP 52010 to 52610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:34,841 DEBUG Processing 170/643 atomic regions from SNP 50794 to 51394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:34,872 DEBUG Processing 84/599 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:34,876 DEBUG Processing 68/513 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:34,885 DEBUG Processing 58/561 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:34,983 DEBUG Processing 496/680 atomic regions from SNP 148588 to 149188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:34,990 DEBUG Processing 175/681 atomic regions from SNP 52310 to 52910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:35,066 DEBUG Processing 171/643 atomic regions from SNP 51094 to 51694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:35,069 DEBUG Processing 69/513 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:35,094 DEBUG Processing 85/599 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:35,096 DEBUG Processing 59/561 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:35,207 DEBUG Processing 176/681 atomic regions from SNP 52610 to 53210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:35,227 DEBUG Processing 497/680 atomic regions from SNP 148888 to 149488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:35,267 DEBUG Processing 70/513 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:35,296 DEBUG Processing 172/643 atomic regions from SNP 51394 to 51994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:35,300 DEBUG Processing 60/561 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:35,318 DEBUG Processing 86/599 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:35,420 DEBUG Processing 177/681 atomic regions from SNP 52910 to 53510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:35,469 DEBUG Processing 71/513 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:35,473 DEBUG Processing 498/680 atomic regions from SNP 149188 to 149788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:35,513 DEBUG Processing 61/561 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:35,537 DEBUG Processing 173/643 atomic regions from SNP 51694 to 52294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:35,550 DEBUG Processing 87/599 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:35,625 DEBUG Processing 178/681 atomic regions from SNP 53210 to 53810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:35,657 DEBUG Processing 72/513 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:35,711 DEBUG Processing 499/680 atomic regions from SNP 149488 to 150088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:35,718 DEBUG Processing 62/561 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:35,778 DEBUG Processing 174/643 atomic regions from SNP 51994 to 52594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:35,786 DEBUG Processing 88/599 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:35,844 DEBUG Processing 179/681 atomic regions from SNP 53510 to 54110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:35,847 DEBUG Processing 73/513 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:35,910 DEBUG Processing 63/561 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:35,945 DEBUG Processing 500/680 atomic regions from SNP 149788 to 150388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:36,009 DEBUG Processing 175/643 atomic regions from SNP 52294 to 52894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:36,017 DEBUG Processing 89/599 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:36,050 DEBUG Processing 74/513 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:36,070 DEBUG Processing 180/681 atomic regions from SNP 53810 to 54410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:36,111 DEBUG Processing 64/561 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:36,182 DEBUG Processing 501/680 atomic regions from SNP 150088 to 150688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:36,243 DEBUG Processing 176/643 atomic regions from SNP 52594 to 53194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:36,244 DEBUG Processing 75/513 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:36,244 DEBUG Processing 90/599 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:36,293 DEBUG Processing 181/681 atomic regions from SNP 54110 to 54710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:36,317 DEBUG Processing 65/561 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:36,419 DEBUG Processing 502/680 atomic regions from SNP 150388 to 150988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:36,433 DEBUG Processing 76/513 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:36,471 DEBUG Processing 177/643 atomic regions from SNP 52894 to 53494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:36,491 DEBUG Processing 91/599 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:36,511 DEBUG Processing 182/681 atomic regions from SNP 54410 to 55010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:36,518 DEBUG Processing 66/561 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:36,623 DEBUG Processing 77/513 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:36,661 DEBUG Processing 503/680 atomic regions from SNP 150688 to 151288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:36,700 DEBUG Processing 178/643 atomic regions from SNP 53194 to 53794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:36,720 DEBUG Processing 67/561 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:36,732 DEBUG Processing 183/681 atomic regions from SNP 54710 to 55310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:36,733 DEBUG Processing 92/599 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:36,810 DEBUG Processing 78/513 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:36,908 DEBUG Processing 504/680 atomic regions from SNP 150988 to 151588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:36,925 DEBUG Processing 68/561 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:36,934 DEBUG Processing 179/643 atomic regions from SNP 53494 to 54094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:36,959 DEBUG Processing 184/681 atomic regions from SNP 55010 to 55610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:36,962 DEBUG Processing 93/599 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:37,005 DEBUG Processing 79/513 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:37,124 DEBUG Processing 69/561 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:37,158 DEBUG Processing 505/680 atomic regions from SNP 151288 to 151888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:37,172 DEBUG Processing 180/643 atomic regions from SNP 53794 to 54394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:37,183 DEBUG Processing 185/681 atomic regions from SNP 55310 to 55910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:37,194 DEBUG Processing 94/599 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:37,230 DEBUG Processing 80/513 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:37,320 DEBUG Processing 70/561 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:37,403 DEBUG Processing 186/681 atomic regions from SNP 55610 to 56210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:37,408 DEBUG Processing 506/680 atomic regions from SNP 151588 to 152188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:37,410 DEBUG Processing 181/643 atomic regions from SNP 54094 to 54694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:37,428 DEBUG Processing 95/599 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:37,441 DEBUG Processing 81/513 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:37,519 DEBUG Processing 71/561 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:37,627 DEBUG Processing 187/681 atomic regions from SNP 55910 to 56510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:37,650 DEBUG Processing 182/643 atomic regions from SNP 54394 to 54994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:37,657 DEBUG Processing 507/680 atomic regions from SNP 151888 to 152488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:37,663 DEBUG Processing 96/599 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:37,664 DEBUG Processing 82/513 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:37,715 DEBUG Processing 72/561 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:37,847 DEBUG Processing 188/681 atomic regions from SNP 56210 to 56810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:37,869 DEBUG Processing 83/513 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:37,889 DEBUG Processing 183/643 atomic regions from SNP 54694 to 55294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:37,898 DEBUG Processing 97/599 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:37,906 DEBUG Processing 508/680 atomic regions from SNP 152188 to 152788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:37,919 DEBUG Processing 73/561 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:38,067 DEBUG Processing 189/681 atomic regions from SNP 56510 to 57110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:38,073 DEBUG Processing 84/513 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:38,121 DEBUG Processing 74/561 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:38,124 DEBUG Processing 184/643 atomic regions from SNP 54994 to 55594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:38,128 DEBUG Processing 98/599 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:38,151 DEBUG Processing 509/680 atomic regions from SNP 152488 to 153088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:38,298 DEBUG Processing 190/681 atomic regions from SNP 56810 to 57410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:38,300 DEBUG Processing 85/513 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:38,338 DEBUG Processing 75/561 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:38,364 DEBUG Processing 185/643 atomic regions from SNP 55294 to 55894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:38,365 DEBUG Processing 99/599 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:38,398 DEBUG Processing 510/680 atomic regions from SNP 152788 to 153388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:38,507 DEBUG Processing 86/513 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:38,520 DEBUG Processing 191/681 atomic regions from SNP 57110 to 57710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:38,550 DEBUG Processing 76/561 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:38,595 DEBUG Processing 100/599 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:38,624 DEBUG Processing 186/643 atomic regions from SNP 55594 to 56194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:38,648 DEBUG Processing 511/680 atomic regions from SNP 153088 to 153688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:38,707 DEBUG Processing 87/513 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:38,730 DEBUG Processing 192/681 atomic regions from SNP 57410 to 58010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:38,744 DEBUG Processing 77/561 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:38,816 DEBUG Processing 101/599 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:38,858 DEBUG Processing 187/643 atomic regions from SNP 55894 to 56494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:38,892 DEBUG Processing 512/680 atomic regions from SNP 153388 to 153988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:38,922 DEBUG Processing 88/513 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:38,944 DEBUG Processing 78/561 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:38,949 DEBUG Processing 193/681 atomic regions from SNP 57710 to 58310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:39,043 DEBUG Processing 102/599 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:39,088 DEBUG Processing 188/643 atomic regions from SNP 56194 to 56794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:39,118 DEBUG Processing 89/513 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:39,133 DEBUG Processing 513/680 atomic regions from SNP 153688 to 154288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:39,149 DEBUG Processing 79/561 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:39,173 DEBUG Processing 194/681 atomic regions from SNP 58010 to 58610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:39,273 DEBUG Processing 103/599 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:39,312 DEBUG Processing 90/513 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:39,321 DEBUG Processing 189/643 atomic regions from SNP 56494 to 57094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:39,350 DEBUG Processing 80/561 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:39,372 DEBUG Processing 514/680 atomic regions from SNP 153988 to 154588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:39,390 DEBUG Processing 195/681 atomic regions from SNP 58310 to 58910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:39,504 DEBUG Processing 104/599 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:39,506 DEBUG Processing 91/513 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:39,553 DEBUG Processing 81/561 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:39,569 DEBUG Processing 190/643 atomic regions from SNP 56794 to 57394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:39,605 DEBUG Processing 196/681 atomic regions from SNP 58610 to 59210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:39,611 DEBUG Processing 515/680 atomic regions from SNP 154288 to 154888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:39,702 DEBUG Processing 92/513 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:39,739 DEBUG Processing 105/599 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:39,760 DEBUG Processing 82/561 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:39,817 DEBUG Processing 191/643 atomic regions from SNP 57094 to 57694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:39,825 DEBUG Processing 197/681 atomic regions from SNP 58910 to 59510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:39,849 DEBUG Processing 516/680 atomic regions from SNP 154588 to 155188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:39,889 DEBUG Processing 93/513 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:39,965 DEBUG Processing 83/561 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:39,980 DEBUG Processing 106/599 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:40,050 DEBUG Processing 198/681 atomic regions from SNP 59210 to 59810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:40,055 DEBUG Processing 192/643 atomic regions from SNP 57394 to 57994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:40,079 DEBUG Processing 94/513 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:40,095 DEBUG Processing 517/680 atomic regions from SNP 154888 to 155488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:40,155 DEBUG Processing 84/561 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:40,212 DEBUG Processing 107/599 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:40,277 DEBUG Processing 199/681 atomic regions from SNP 59510 to 60110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:40,283 DEBUG Processing 95/513 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:40,298 DEBUG Processing 193/643 atomic regions from SNP 57694 to 58294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:40,346 DEBUG Processing 518/680 atomic regions from SNP 155188 to 155788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:40,354 DEBUG Processing 85/561 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:40,430 DEBUG Processing 108/599 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:40,476 DEBUG Processing 96/513 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:40,494 DEBUG Processing 200/681 atomic regions from SNP 59810 to 60410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:40,534 DEBUG Processing 194/643 atomic regions from SNP 57994 to 58594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:40,564 DEBUG Processing 86/561 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:40,596 DEBUG Processing 519/680 atomic regions from SNP 155488 to 156088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:40,659 DEBUG Processing 109/599 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:40,666 DEBUG Processing 97/513 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:40,708 DEBUG Processing 201/681 atomic regions from SNP 60110 to 60710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:40,765 DEBUG Processing 195/643 atomic regions from SNP 58294 to 58894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:40,767 DEBUG Processing 87/561 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:40,840 DEBUG Processing 520/680 atomic regions from SNP 155788 to 156388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:40,870 DEBUG Processing 98/513 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:40,893 DEBUG Processing 110/599 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:40,927 DEBUG Processing 202/681 atomic regions from SNP 60410 to 61010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:40,966 DEBUG Processing 88/561 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:41,002 DEBUG Processing 196/643 atomic regions from SNP 58594 to 59194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:41,087 DEBUG Processing 99/513 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:41,087 DEBUG Processing 521/680 atomic regions from SNP 156088 to 156688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:41,124 DEBUG Processing 111/599 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:41,150 DEBUG Processing 203/681 atomic regions from SNP 60710 to 61310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:41,166 DEBUG Processing 89/561 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:41,237 DEBUG Processing 197/643 atomic regions from SNP 58894 to 59494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:41,296 DEBUG Processing 100/513 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:41,329 DEBUG Processing 522/680 atomic regions from SNP 156388 to 156988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:41,351 DEBUG Processing 112/599 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:41,372 DEBUG Processing 90/561 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:41,377 DEBUG Processing 204/681 atomic regions from SNP 61010 to 61610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:41,467 DEBUG Processing 198/643 atomic regions from SNP 59194 to 59794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:41,479 DEBUG Processing 101/513 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:41,576 DEBUG Processing 91/561 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:41,579 DEBUG Processing 523/680 atomic regions from SNP 156688 to 157288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:41,586 DEBUG Processing 113/599 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:41,601 DEBUG Processing 205/681 atomic regions from SNP 61310 to 61910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:41,667 DEBUG Processing 102/513 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:41,697 DEBUG Processing 199/643 atomic regions from SNP 59494 to 60094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:41,768 DEBUG Processing 92/561 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:41,813 DEBUG Processing 114/599 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:41,814 DEBUG Processing 206/681 atomic regions from SNP 61610 to 62210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:41,826 DEBUG Processing 524/680 atomic regions from SNP 156988 to 157588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:41,868 DEBUG Processing 103/513 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:41,928 DEBUG Processing 200/643 atomic regions from SNP 59794 to 60394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:41,963 DEBUG Processing 93/561 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:42,021 DEBUG Processing 207/681 atomic regions from SNP 61910 to 62510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:42,037 DEBUG Processing 115/599 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:42,060 DEBUG Processing 525/680 atomic regions from SNP 157288 to 157888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:42,069 DEBUG Processing 104/513 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:42,163 DEBUG Processing 94/561 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:42,164 DEBUG Processing 201/643 atomic regions from SNP 60094 to 60694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:42,240 DEBUG Processing 208/681 atomic regions from SNP 62210 to 62810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:42,259 DEBUG Processing 105/513 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:42,263 DEBUG Processing 116/599 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:42,299 DEBUG Processing 526/680 atomic regions from SNP 157588 to 158188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:42,356 DEBUG Processing 95/561 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:42,393 DEBUG Processing 202/643 atomic regions from SNP 60394 to 60994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:42,457 DEBUG Processing 106/513 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:42,461 DEBUG Processing 209/681 atomic regions from SNP 62510 to 63110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:42,496 DEBUG Processing 117/599 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:42,547 DEBUG Processing 527/680 atomic regions from SNP 157888 to 158488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:42,558 DEBUG Processing 96/561 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:42,618 DEBUG Processing 203/643 atomic regions from SNP 60694 to 61294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:42,636 DEBUG Processing 107/513 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:42,665 DEBUG Processing 210/681 atomic regions from SNP 62810 to 63410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:42,721 DEBUG Processing 118/599 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:42,764 DEBUG Processing 97/561 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:42,796 DEBUG Processing 528/680 atomic regions from SNP 158188 to 158788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:42,833 DEBUG Processing 108/513 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:42,857 DEBUG Processing 204/643 atomic regions from SNP 60994 to 61594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:42,879 DEBUG Processing 211/681 atomic regions from SNP 63110 to 63710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:42,933 DEBUG Processing 119/599 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:42,947 DEBUG Processing 98/561 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:43,029 DEBUG Processing 109/513 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:43,042 DEBUG Processing 529/680 atomic regions from SNP 158488 to 159088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:43,099 DEBUG Processing 205/643 atomic regions from SNP 61294 to 61894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:43,105 DEBUG Processing 212/681 atomic regions from SNP 63410 to 64010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:43,140 DEBUG Processing 99/561 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:43,159 DEBUG Processing 120/599 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:43,204 DEBUG Processing 110/513 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:43,275 DEBUG Processing 530/680 atomic regions from SNP 158788 to 159388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:43,326 DEBUG Processing 213/681 atomic regions from SNP 63710 to 64310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:43,337 DEBUG Processing 206/643 atomic regions from SNP 61594 to 62194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:43,345 DEBUG Processing 100/561 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:43,392 DEBUG Processing 111/513 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:43,396 DEBUG Processing 121/599 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:43,510 DEBUG Processing 531/680 atomic regions from SNP 159088 to 159688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:43,534 DEBUG Processing 214/681 atomic regions from SNP 64010 to 64610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:43,541 DEBUG Processing 101/561 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:43,568 DEBUG Processing 207/643 atomic regions from SNP 61894 to 62494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:43,580 DEBUG Processing 112/513 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:43,627 DEBUG Processing 122/599 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:43,741 DEBUG Processing 102/561 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:43,750 DEBUG Processing 215/681 atomic regions from SNP 64310 to 64910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:43,754 DEBUG Processing 532/680 atomic regions from SNP 159388 to 159988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:43,769 DEBUG Processing 113/513 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:43,797 DEBUG Processing 208/643 atomic regions from SNP 62194 to 62794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:43,848 DEBUG Processing 123/599 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:43,942 DEBUG Processing 103/561 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:43,967 DEBUG Processing 114/513 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:43,972 DEBUG Processing 216/681 atomic regions from SNP 64610 to 65210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:44,003 DEBUG Processing 533/680 atomic regions from SNP 159688 to 160288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:44,035 DEBUG Processing 209/643 atomic regions from SNP 62494 to 63094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:44,074 DEBUG Processing 124/599 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:44,128 DEBUG Processing 104/561 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:44,154 DEBUG Processing 115/513 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:44,183 DEBUG Processing 217/681 atomic regions from SNP 64910 to 65510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:44,249 DEBUG Processing 534/680 atomic regions from SNP 159988 to 160588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:44,274 DEBUG Processing 210/643 atomic regions from SNP 62794 to 63394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:44,310 DEBUG Processing 125/599 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:44,322 DEBUG Processing 105/561 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:44,336 DEBUG Processing 116/513 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:44,386 DEBUG Processing 218/681 atomic regions from SNP 65210 to 65810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:44,492 DEBUG Processing 535/680 atomic regions from SNP 160288 to 160888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:44,502 DEBUG Processing 211/643 atomic regions from SNP 63094 to 63694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:44,527 DEBUG Processing 106/561 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:44,534 DEBUG Processing 117/513 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:44,544 DEBUG Processing 126/599 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:44,602 DEBUG Processing 219/681 atomic regions from SNP 65510 to 66110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:44,723 DEBUG Processing 118/513 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:44,723 DEBUG Processing 107/561 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:44,732 DEBUG Processing 212/643 atomic regions from SNP 63394 to 63994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:44,733 DEBUG Processing 536/680 atomic regions from SNP 160588 to 161188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:44,772 DEBUG Processing 127/599 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:44,825 DEBUG Processing 220/681 atomic regions from SNP 65810 to 66410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:44,910 DEBUG Processing 119/513 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:44,918 DEBUG Processing 108/561 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:44,965 DEBUG Processing 213/643 atomic regions from SNP 63694 to 64294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:44,979 DEBUG Processing 537/680 atomic regions from SNP 160888 to 161488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:45,000 DEBUG Processing 128/599 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:45,037 DEBUG Processing 221/681 atomic regions from SNP 66110 to 66710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:45,103 DEBUG Processing 120/513 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:45,118 DEBUG Processing 109/561 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:45,201 DEBUG Processing 214/643 atomic regions from SNP 63994 to 64594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:45,228 DEBUG Processing 538/680 atomic regions from SNP 161188 to 161788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:45,231 DEBUG Processing 129/599 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:45,251 DEBUG Processing 222/681 atomic regions from SNP 66410 to 67010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:45,294 DEBUG Processing 121/513 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:45,312 DEBUG Processing 110/561 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:45,434 DEBUG Processing 215/643 atomic regions from SNP 64294 to 64894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:45,464 DEBUG Processing 130/599 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:45,472 DEBUG Processing 223/681 atomic regions from SNP 66710 to 67310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:45,477 DEBUG Processing 539/680 atomic regions from SNP 161488 to 162088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:45,493 DEBUG Processing 122/513 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:45,515 DEBUG Processing 111/561 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:45,661 DEBUG Processing 216/643 atomic regions from SNP 64594 to 65194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:45,690 DEBUG Processing 123/513 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:45,692 DEBUG Processing 224/681 atomic regions from SNP 67010 to 67610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:45,693 DEBUG Processing 131/599 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:45,720 DEBUG Processing 112/561 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:45,721 DEBUG Processing 540/680 atomic regions from SNP 161788 to 162388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:45,883 DEBUG Processing 124/513 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:45,893 DEBUG Processing 217/643 atomic regions from SNP 64894 to 65494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:45,907 DEBUG Processing 225/681 atomic regions from SNP 67310 to 67910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:45,923 DEBUG Processing 132/599 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:45,923 DEBUG Processing 113/561 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:45,964 DEBUG Processing 541/680 atomic regions from SNP 162088 to 162688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:46,070 DEBUG Processing 125/513 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:46,121 DEBUG Processing 114/561 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:46,122 DEBUG Processing 226/681 atomic regions from SNP 67610 to 68210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:46,127 DEBUG Processing 218/643 atomic regions from SNP 65194 to 65794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:46,154 DEBUG Processing 133/599 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:46,209 DEBUG Processing 542/680 atomic regions from SNP 162388 to 162988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:46,262 DEBUG Processing 126/513 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:46,321 DEBUG Processing 115/561 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:46,340 DEBUG Processing 227/681 atomic regions from SNP 67910 to 68510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:46,359 DEBUG Processing 219/643 atomic regions from SNP 65494 to 66094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:46,394 DEBUG Processing 134/599 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:46,454 DEBUG Processing 127/513 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:46,456 DEBUG Processing 543/680 atomic regions from SNP 162688 to 163288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:46,522 DEBUG Processing 116/561 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:46,558 DEBUG Processing 228/681 atomic regions from SNP 68210 to 68810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:46,585 DEBUG Processing 220/643 atomic regions from SNP 65794 to 66394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:46,618 DEBUG Processing 135/599 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:46,641 DEBUG Processing 128/513 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:46,698 DEBUG Processing 544/680 atomic regions from SNP 162988 to 163588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:46,718 DEBUG Processing 117/561 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:46,774 DEBUG Processing 229/681 atomic regions from SNP 68510 to 69110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:46,817 DEBUG Processing 221/643 atomic regions from SNP 66094 to 66694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:46,838 DEBUG Processing 129/513 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:46,844 DEBUG Processing 136/599 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:46,914 DEBUG Processing 118/561 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:46,934 DEBUG Processing 545/680 atomic regions from SNP 163288 to 163888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:46,986 DEBUG Processing 230/681 atomic regions from SNP 68810 to 69410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:47,030 DEBUG Processing 130/513 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:47,061 DEBUG Processing 222/643 atomic regions from SNP 66394 to 66994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:47,081 DEBUG Processing 137/599 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:47,118 DEBUG Processing 119/561 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:47,170 DEBUG Processing 546/680 atomic regions from SNP 163588 to 164188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:47,201 DEBUG Processing 231/681 atomic regions from SNP 69110 to 69710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:47,215 DEBUG Processing 131/513 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:47,293 DEBUG Processing 223/643 atomic regions from SNP 66694 to 67294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:47,312 DEBUG Processing 138/599 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:47,315 DEBUG Processing 120/561 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:47,412 DEBUG Processing 132/513 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:47,416 DEBUG Processing 547/680 atomic regions from SNP 163888 to 164488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:47,424 DEBUG Processing 232/681 atomic regions from SNP 69410 to 70010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:47,508 DEBUG Processing 121/561 atomic regions from SNP 36120 to 36721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:47,519 DEBUG Processing 224/643 atomic regions from SNP 66994 to 67594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:47,536 DEBUG Processing 139/599 atomic regions from SNP 41538 to 42139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:47,606 DEBUG Processing 133/513 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:47,646 DEBUG Processing 233/681 atomic regions from SNP 69710 to 70310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:47,664 DEBUG Processing 548/680 atomic regions from SNP 164188 to 164788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:47,708 DEBUG Processing 122/561 atomic regions from SNP 36421 to 37022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:47,752 DEBUG Processing 225/643 atomic regions from SNP 67294 to 67894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:47,764 DEBUG Processing 140/599 atomic regions from SNP 41839 to 42440 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:47,793 DEBUG Processing 134/513 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:47,863 DEBUG Processing 234/681 atomic regions from SNP 70010 to 70610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:47,908 DEBUG Processing 549/680 atomic regions from SNP 164488 to 165088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:47,910 DEBUG Processing 123/561 atomic regions from SNP 36722 to 37323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:47,984 DEBUG Processing 135/513 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:47,992 DEBUG Processing 226/643 atomic regions from SNP 67594 to 68194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:47,999 DEBUG Processing 141/599 atomic regions from SNP 42140 to 42741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:48,078 DEBUG Processing 235/681 atomic regions from SNP 70310 to 70910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:48,107 DEBUG Processing 124/561 atomic regions from SNP 37023 to 37624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:48,146 DEBUG Processing 550/680 atomic regions from SNP 164788 to 165388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:48,174 DEBUG Processing 136/513 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:48,234 DEBUG Processing 142/599 atomic regions from SNP 42441 to 43042 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:48,241 DEBUG Processing 227/643 atomic regions from SNP 67894 to 68494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:48,294 DEBUG Processing 236/681 atomic regions from SNP 70610 to 71210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:48,307 DEBUG Processing 125/561 atomic regions from SNP 37324 to 37925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:48,368 DEBUG Processing 137/513 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:48,391 DEBUG Processing 551/680 atomic regions from SNP 165088 to 165688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:48,464 DEBUG Processing 143/599 atomic regions from SNP 42742 to 43343 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:48,475 DEBUG Processing 228/643 atomic regions from SNP 68194 to 68794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:48,513 DEBUG Processing 126/561 atomic regions from SNP 37625 to 38226 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:48,517 DEBUG Processing 237/681 atomic regions from SNP 70910 to 71510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:48,567 DEBUG Processing 138/513 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:48,640 DEBUG Processing 552/680 atomic regions from SNP 165388 to 165988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:48,695 DEBUG Processing 144/599 atomic regions from SNP 43043 to 43644 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:48,710 DEBUG Processing 229/643 atomic regions from SNP 68494 to 69094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:48,712 DEBUG Processing 127/561 atomic regions from SNP 37926 to 38527 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:48,733 DEBUG Processing 238/681 atomic regions from SNP 71210 to 71810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:48,762 DEBUG Processing 139/513 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:48,891 DEBUG Processing 553/680 atomic regions from SNP 165688 to 166288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:48,913 DEBUG Processing 128/561 atomic regions from SNP 38227 to 38828 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:48,931 DEBUG Processing 145/599 atomic regions from SNP 43344 to 43945 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:48,950 DEBUG Processing 230/643 atomic regions from SNP 68794 to 69394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:48,951 DEBUG Processing 239/681 atomic regions from SNP 71510 to 72110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:48,954 DEBUG Processing 140/513 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:49,110 DEBUG Processing 129/561 atomic regions from SNP 38528 to 39129 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:49,136 DEBUG Processing 554/680 atomic regions from SNP 165988 to 166588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:49,143 DEBUG Processing 141/513 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:49,164 DEBUG Processing 240/681 atomic regions from SNP 71810 to 72410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:49,166 DEBUG Processing 146/599 atomic regions from SNP 43645 to 44246 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:49,192 DEBUG Processing 231/643 atomic regions from SNP 69094 to 69694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:49,313 DEBUG Processing 130/561 atomic regions from SNP 38829 to 39430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:49,337 DEBUG Processing 142/513 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:49,376 DEBUG Processing 555/680 atomic regions from SNP 166288 to 166888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:49,378 DEBUG Processing 241/681 atomic regions from SNP 72110 to 72710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:49,389 DEBUG Processing 147/599 atomic regions from SNP 43946 to 44547 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:49,420 DEBUG Processing 232/643 atomic regions from SNP 69394 to 69994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:49,513 DEBUG Processing 131/561 atomic regions from SNP 39130 to 39731 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:49,533 DEBUG Processing 143/513 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:49,614 DEBUG Processing 242/681 atomic regions from SNP 72410 to 73010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:49,618 DEBUG Processing 148/599 atomic regions from SNP 44247 to 44848 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:49,621 DEBUG Processing 556/680 atomic regions from SNP 166588 to 167188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:49,649 DEBUG Processing 233/643 atomic regions from SNP 69694 to 70294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:49,707 DEBUG Processing 132/561 atomic regions from SNP 39431 to 40032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:49,719 DEBUG Processing 144/513 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:49,846 DEBUG Processing 243/681 atomic regions from SNP 72710 to 73310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:49,855 DEBUG Processing 149/599 atomic regions from SNP 44548 to 45149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:49,874 DEBUG Processing 557/680 atomic regions from SNP 166888 to 167488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:49,886 DEBUG Processing 234/643 atomic regions from SNP 69994 to 70594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:49,910 DEBUG Processing 133/561 atomic regions from SNP 39732 to 40333 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:49,913 DEBUG Processing 145/513 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:50,053 DEBUG Processing 244/681 atomic regions from SNP 73010 to 73610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:50,082 DEBUG Processing 150/599 atomic regions from SNP 44849 to 45450 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:50,109 DEBUG Processing 146/513 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:50,114 DEBUG Processing 134/561 atomic regions from SNP 40033 to 40634 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:50,125 DEBUG Processing 558/680 atomic regions from SNP 167188 to 167788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:50,141 DEBUG Processing 235/643 atomic regions from SNP 70294 to 70894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:50,262 DEBUG Processing 245/681 atomic regions from SNP 73310 to 73910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:50,298 DEBUG Processing 147/513 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:50,299 DEBUG Processing 151/599 atomic regions from SNP 45150 to 45751 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:50,312 DEBUG Processing 135/561 atomic regions from SNP 40334 to 40935 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:50,366 DEBUG Processing 559/680 atomic regions from SNP 167488 to 168088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:50,370 DEBUG Processing 236/643 atomic regions from SNP 70594 to 71194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:50,475 DEBUG Processing 246/681 atomic regions from SNP 73610 to 74210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:50,490 DEBUG Processing 148/513 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:50,509 DEBUG Processing 136/561 atomic regions from SNP 40635 to 41236 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:50,519 DEBUG Processing 152/599 atomic regions from SNP 45451 to 46052 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:50,592 DEBUG Processing 237/643 atomic regions from SNP 70894 to 71494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:50,600 DEBUG Processing 560/680 atomic regions from SNP 167788 to 168388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:50,678 DEBUG Processing 149/513 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:50,687 DEBUG Processing 247/681 atomic regions from SNP 73910 to 74510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:50,709 DEBUG Processing 137/561 atomic regions from SNP 40936 to 41537 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:50,746 DEBUG Processing 153/599 atomic regions from SNP 45752 to 46353 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:50,821 DEBUG Processing 238/643 atomic regions from SNP 71194 to 71794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:50,839 DEBUG Processing 561/680 atomic regions from SNP 168088 to 168688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:50,872 DEBUG Processing 150/513 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:50,906 DEBUG Processing 138/561 atomic regions from SNP 41237 to 41838 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:50,907 DEBUG Processing 248/681 atomic regions from SNP 74210 to 74810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:50,970 DEBUG Processing 154/599 atomic regions from SNP 46053 to 46654 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:51,051 DEBUG Processing 239/643 atomic regions from SNP 71494 to 72094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:51,072 DEBUG Processing 151/513 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:51,079 DEBUG Processing 562/680 atomic regions from SNP 168388 to 168988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:51,107 DEBUG Processing 139/561 atomic regions from SNP 41538 to 42139 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:51,126 DEBUG Processing 249/681 atomic regions from SNP 74510 to 75110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:51,184 DEBUG Processing 155/599 atomic regions from SNP 46354 to 46955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:51,269 DEBUG Processing 152/513 atomic regions from SNP 45451 to 46052 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:51,277 DEBUG Processing 240/643 atomic regions from SNP 71794 to 72394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:51,311 DEBUG Processing 140/561 atomic regions from SNP 41839 to 42440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:51,320 DEBUG Processing 563/680 atomic regions from SNP 168688 to 169288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:51,351 DEBUG Processing 250/681 atomic regions from SNP 74810 to 75410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:51,404 DEBUG Processing 156/599 atomic regions from SNP 46655 to 47256 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:51,461 DEBUG Processing 153/513 atomic regions from SNP 45752 to 46353 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:51,505 DEBUG Processing 241/643 atomic regions from SNP 72094 to 72694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:51,511 DEBUG Processing 141/561 atomic regions from SNP 42140 to 42741 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:51,559 DEBUG Processing 564/680 atomic regions from SNP 168988 to 169588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:51,567 DEBUG Processing 251/681 atomic regions from SNP 75110 to 75710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:51,627 DEBUG Processing 157/599 atomic regions from SNP 46956 to 47557 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:51,655 DEBUG Processing 154/513 atomic regions from SNP 46053 to 46654 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:51,713 DEBUG Processing 142/561 atomic regions from SNP 42441 to 43042 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:51,735 DEBUG Processing 242/643 atomic regions from SNP 72394 to 72994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:51,776 DEBUG Processing 252/681 atomic regions from SNP 75410 to 76010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:51,799 DEBUG Processing 565/680 atomic regions from SNP 169288 to 169888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:51,846 DEBUG Processing 155/513 atomic regions from SNP 46354 to 46955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:51,852 DEBUG Processing 158/599 atomic regions from SNP 47257 to 47858 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:51,915 DEBUG Processing 143/561 atomic regions from SNP 42742 to 43343 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:51,961 DEBUG Processing 243/643 atomic regions from SNP 72694 to 73294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:51,988 DEBUG Processing 253/681 atomic regions from SNP 75710 to 76310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:52,025 DEBUG Processing 156/513 atomic regions from SNP 46655 to 47256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:52,036 DEBUG Processing 566/680 atomic regions from SNP 169588 to 170188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:52,072 DEBUG Processing 159/599 atomic regions from SNP 47558 to 48159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:52,113 DEBUG Processing 144/561 atomic regions from SNP 43043 to 43644 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:52,184 DEBUG Processing 244/643 atomic regions from SNP 72994 to 73594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:52,203 DEBUG Processing 254/681 atomic regions from SNP 76010 to 76610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:52,211 DEBUG Processing 157/513 atomic regions from SNP 46956 to 47556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:52,271 DEBUG Processing 567/680 atomic regions from SNP 169888 to 170488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:52,291 DEBUG Processing 160/599 atomic regions from SNP 47859 to 48460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:52,306 DEBUG Processing 145/561 atomic regions from SNP 43344 to 43945 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:52,406 DEBUG Processing 158/513 atomic regions from SNP 47256 to 47856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:52,412 DEBUG Processing 245/643 atomic regions from SNP 73294 to 73894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:52,425 DEBUG Processing 255/681 atomic regions from SNP 76310 to 76910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:52,499 DEBUG Processing 146/561 atomic regions from SNP 43645 to 44246 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:52,510 DEBUG Processing 568/680 atomic regions from SNP 170188 to 170788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:52,514 DEBUG Processing 161/599 atomic regions from SNP 48160 to 48761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:52,595 DEBUG Processing 159/513 atomic regions from SNP 47556 to 48156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:52,637 DEBUG Processing 246/643 atomic regions from SNP 73594 to 74194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:52,643 DEBUG Processing 256/681 atomic regions from SNP 76610 to 77210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:52,696 DEBUG Processing 147/561 atomic regions from SNP 43946 to 44547 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:52,741 DEBUG Processing 162/599 atomic regions from SNP 48461 to 49062 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:52,755 DEBUG Processing 569/680 atomic regions from SNP 170488 to 171088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:52,781 DEBUG Processing 160/513 atomic regions from SNP 47856 to 48456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:52,856 DEBUG Processing 257/681 atomic regions from SNP 76910 to 77510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:52,861 DEBUG Processing 247/643 atomic regions from SNP 73894 to 74494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:52,891 DEBUG Processing 148/561 atomic regions from SNP 44247 to 44848 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:52,969 DEBUG Processing 161/513 atomic regions from SNP 48156 to 48756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:52,970 DEBUG Processing 163/599 atomic regions from SNP 48762 to 49363 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:53,002 DEBUG Processing 570/680 atomic regions from SNP 170788 to 171388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:53,085 DEBUG Processing 149/561 atomic regions from SNP 44548 to 45149 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:53,090 DEBUG Processing 258/681 atomic regions from SNP 77210 to 77810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:53,093 DEBUG Processing 248/643 atomic regions from SNP 74194 to 74794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:53,153 DEBUG Processing 162/513 atomic regions from SNP 48456 to 49056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:53,189 DEBUG Processing 164/599 atomic regions from SNP 49063 to 49664 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:53,239 DEBUG Processing 571/680 atomic regions from SNP 171088 to 171688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:53,280 DEBUG Processing 150/561 atomic regions from SNP 44849 to 45450 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:53,317 DEBUG Processing 259/681 atomic regions from SNP 77510 to 78110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:53,330 DEBUG Processing 249/643 atomic regions from SNP 74494 to 75094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:53,340 DEBUG Processing 163/513 atomic regions from SNP 48756 to 49356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:53,411 DEBUG Processing 165/599 atomic regions from SNP 49364 to 49965 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:53,472 DEBUG Processing 572/680 atomic regions from SNP 171388 to 171988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:53,473 DEBUG Processing 151/561 atomic regions from SNP 45150 to 45751 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:53,528 DEBUG Processing 164/513 atomic regions from SNP 49056 to 49656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:53,533 DEBUG Processing 260/681 atomic regions from SNP 77810 to 78410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:53,555 DEBUG Processing 250/643 atomic regions from SNP 74794 to 75394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:53,637 DEBUG Processing 166/599 atomic regions from SNP 49665 to 50266 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:53,674 DEBUG Processing 152/561 atomic regions from SNP 45451 to 46052 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:53,716 DEBUG Processing 573/680 atomic regions from SNP 171688 to 172288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:53,725 DEBUG Processing 165/513 atomic regions from SNP 49356 to 49956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:53,755 DEBUG Processing 261/681 atomic regions from SNP 78110 to 78710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:53,782 DEBUG Processing 251/643 atomic regions from SNP 75094 to 75694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:53,859 DEBUG Processing 167/599 atomic regions from SNP 49966 to 50567 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:53,869 DEBUG Processing 153/561 atomic regions from SNP 45752 to 46353 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:53,925 DEBUG Processing 166/513 atomic regions from SNP 49656 to 50256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:53,969 DEBUG Processing 574/680 atomic regions from SNP 171988 to 172588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:53,979 DEBUG Processing 262/681 atomic regions from SNP 78410 to 79010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:54,017 DEBUG Processing 252/643 atomic regions from SNP 75394 to 75994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:54,058 DEBUG Processing 154/561 atomic regions from SNP 46053 to 46654 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:54,073 DEBUG Processing 168/599 atomic regions from SNP 50267 to 50868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:54,118 DEBUG Processing 167/513 atomic regions from SNP 49956 to 50556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:54,194 DEBUG Processing 263/681 atomic regions from SNP 78710 to 79310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:54,227 DEBUG Processing 575/680 atomic regions from SNP 172288 to 172888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:54,258 DEBUG Processing 155/561 atomic regions from SNP 46354 to 46955 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:54,258 DEBUG Processing 253/643 atomic regions from SNP 75694 to 76294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:54,303 DEBUG Processing 169/599 atomic regions from SNP 50568 to 51169 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:54,305 DEBUG Processing 168/513 atomic regions from SNP 50256 to 50856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:54,402 DEBUG Processing 264/681 atomic regions from SNP 79010 to 79610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:54,456 DEBUG Processing 156/561 atomic regions from SNP 46655 to 47256 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:54,486 DEBUG Processing 576/680 atomic regions from SNP 172588 to 173188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:54,493 DEBUG Processing 169/513 atomic regions from SNP 50556 to 51156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:54,498 DEBUG Processing 254/643 atomic regions from SNP 75994 to 76594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:54,528 DEBUG Processing 170/599 atomic regions from SNP 50869 to 51470 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:54,615 DEBUG Processing 265/681 atomic regions from SNP 79310 to 79910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:54,656 DEBUG Processing 157/561 atomic regions from SNP 46956 to 47557 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:54,685 DEBUG Processing 170/513 atomic regions from SNP 50856 to 51456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:54,724 DEBUG Processing 577/680 atomic regions from SNP 172888 to 173488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:54,734 DEBUG Processing 255/643 atomic regions from SNP 76294 to 76894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:54,749 DEBUG Processing 171/599 atomic regions from SNP 51170 to 51771 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:54,829 DEBUG Processing 266/681 atomic regions from SNP 79610 to 80210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:54,860 DEBUG Processing 158/561 atomic regions from SNP 47257 to 47858 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:54,883 DEBUG Processing 171/513 atomic regions from SNP 51156 to 51756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:54,968 DEBUG Processing 578/680 atomic regions from SNP 173188 to 173788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:54,972 DEBUG Processing 256/643 atomic regions from SNP 76594 to 77194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:54,974 DEBUG Processing 172/599 atomic regions from SNP 51471 to 52072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:55,042 DEBUG Processing 267/681 atomic regions from SNP 79910 to 80510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:55,059 DEBUG Processing 159/561 atomic regions from SNP 47558 to 48159 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:55,077 DEBUG Processing 172/513 atomic regions from SNP 51456 to 52056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:55,205 DEBUG Processing 257/643 atomic regions from SNP 76894 to 77494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:55,205 DEBUG Processing 173/599 atomic regions from SNP 51772 to 52373 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:55,213 DEBUG Processing 579/680 atomic regions from SNP 173488 to 174088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:55,253 DEBUG Processing 160/561 atomic regions from SNP 47859 to 48460 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:55,256 DEBUG Processing 268/681 atomic regions from SNP 80210 to 80810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:55,262 DEBUG Processing 173/513 atomic regions from SNP 51756 to 52356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:55,440 DEBUG Processing 174/599 atomic regions from SNP 52073 to 52674 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:55,441 DEBUG Processing 258/643 atomic regions from SNP 77194 to 77794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:55,457 DEBUG Processing 174/513 atomic regions from SNP 52056 to 52656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:55,457 DEBUG Processing 161/561 atomic regions from SNP 48160 to 48761 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:55,461 DEBUG Processing 580/680 atomic regions from SNP 173788 to 174388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:55,477 DEBUG Processing 269/681 atomic regions from SNP 80510 to 81110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:55,661 DEBUG Processing 175/513 atomic regions from SNP 52356 to 52956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:55,668 DEBUG Processing 162/561 atomic regions from SNP 48461 to 49062 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:55,678 DEBUG Processing 175/599 atomic regions from SNP 52374 to 52975 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:55,683 DEBUG Processing 259/643 atomic regions from SNP 77494 to 78094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:55,702 DEBUG Processing 270/681 atomic regions from SNP 80810 to 81410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:55,718 DEBUG Processing 581/680 atomic regions from SNP 174088 to 174688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:55,859 DEBUG Processing 176/513 atomic regions from SNP 52656 to 53256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:55,874 DEBUG Processing 163/561 atomic regions from SNP 48762 to 49363 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:55,913 DEBUG Processing 176/599 atomic regions from SNP 52675 to 53276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:55,922 DEBUG Processing 260/643 atomic regions from SNP 77794 to 78394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:55,929 DEBUG Processing 271/681 atomic regions from SNP 81110 to 81710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:55,997 DEBUG Processing 582/680 atomic regions from SNP 174388 to 174988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:56,047 DEBUG Processing 177/513 atomic regions from SNP 52956 to 53556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:56,071 DEBUG Processing 164/561 atomic regions from SNP 49063 to 49664 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:56,132 DEBUG Processing 177/599 atomic regions from SNP 52976 to 53577 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:56,144 DEBUG Processing 272/681 atomic regions from SNP 81410 to 82010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:56,145 DEBUG Processing 261/643 atomic regions from SNP 78094 to 78694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:56,240 DEBUG Processing 178/513 atomic regions from SNP 53256 to 53856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:56,251 DEBUG Processing 583/680 atomic regions from SNP 174688 to 175288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:56,274 DEBUG Processing 165/561 atomic regions from SNP 49364 to 49965 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:56,357 DEBUG Processing 273/681 atomic regions from SNP 81710 to 82310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:56,359 DEBUG Processing 178/599 atomic regions from SNP 53277 to 53878 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:56,372 DEBUG Processing 262/643 atomic regions from SNP 78394 to 78994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:56,428 DEBUG Processing 179/513 atomic regions from SNP 53556 to 54156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:56,470 DEBUG Processing 166/561 atomic regions from SNP 49665 to 50266 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:56,491 DEBUG Processing 584/680 atomic regions from SNP 174988 to 175588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:56,577 DEBUG Processing 274/681 atomic regions from SNP 82010 to 82610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:56,582 DEBUG Processing 179/599 atomic regions from SNP 53578 to 54179 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:56,599 DEBUG Processing 263/643 atomic regions from SNP 78694 to 79294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:56,619 DEBUG Processing 180/513 atomic regions from SNP 53856 to 54456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:56,665 DEBUG Processing 167/561 atomic regions from SNP 49966 to 50567 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:56,739 DEBUG Processing 585/680 atomic regions from SNP 175288 to 175888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:56,792 DEBUG Processing 275/681 atomic regions from SNP 82310 to 82910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:56,794 DEBUG Processing 180/599 atomic regions from SNP 53879 to 54480 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:56,814 DEBUG Processing 181/513 atomic regions from SNP 54156 to 54756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:56,819 DEBUG Processing 264/643 atomic regions from SNP 78994 to 79594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:56,865 DEBUG Processing 168/561 atomic regions from SNP 50267 to 50868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:56,976 DEBUG Processing 586/680 atomic regions from SNP 175588 to 176188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:57,001 DEBUG Processing 276/681 atomic regions from SNP 82610 to 83210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:57,002 DEBUG Processing 181/599 atomic regions from SNP 54180 to 54781 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:57,003 DEBUG Processing 182/513 atomic regions from SNP 54456 to 55056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:57,031 DEBUG Processing 265/643 atomic regions from SNP 79294 to 79894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:57,065 DEBUG Processing 169/561 atomic regions from SNP 50568 to 51169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:57,190 DEBUG Processing 183/513 atomic regions from SNP 54756 to 55356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:57,213 DEBUG Processing 277/681 atomic regions from SNP 82910 to 83510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:57,214 DEBUG Processing 182/599 atomic regions from SNP 54481 to 55082 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:57,219 DEBUG Processing 587/680 atomic regions from SNP 175888 to 176488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:57,244 DEBUG Processing 266/643 atomic regions from SNP 79594 to 80194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:57,260 DEBUG Processing 170/561 atomic regions from SNP 50869 to 51470 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:57,378 DEBUG Processing 184/513 atomic regions from SNP 55056 to 55656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:57,427 DEBUG Processing 183/599 atomic regions from SNP 54782 to 55383 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:57,437 DEBUG Processing 278/681 atomic regions from SNP 83210 to 83810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:57,456 DEBUG Processing 171/561 atomic regions from SNP 51170 to 51771 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:57,461 DEBUG Processing 267/643 atomic regions from SNP 79894 to 80494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:57,467 DEBUG Processing 588/680 atomic regions from SNP 176188 to 176788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:57,569 DEBUG Processing 185/513 atomic regions from SNP 55356 to 55956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:57,638 DEBUG Processing 184/599 atomic regions from SNP 55083 to 55684 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:57,658 DEBUG Processing 172/561 atomic regions from SNP 51471 to 52072 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:57,669 DEBUG Processing 279/681 atomic regions from SNP 83510 to 84110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:57,681 DEBUG Processing 268/643 atomic regions from SNP 80194 to 80794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:57,714 DEBUG Processing 589/680 atomic regions from SNP 176488 to 177088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:57,756 DEBUG Processing 186/513 atomic regions from SNP 55656 to 56256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:57,853 DEBUG Processing 173/561 atomic regions from SNP 51772 to 52373 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:57,855 DEBUG Processing 185/599 atomic regions from SNP 55384 to 55985 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:57,884 DEBUG Processing 280/681 atomic regions from SNP 83810 to 84410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:57,901 DEBUG Processing 269/643 atomic regions from SNP 80494 to 81094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:57,948 DEBUG Processing 187/513 atomic regions from SNP 55956 to 56556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:57,958 DEBUG Processing 590/680 atomic regions from SNP 176788 to 177388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:58,049 DEBUG Processing 174/561 atomic regions from SNP 52073 to 52674 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:58,078 DEBUG Processing 186/599 atomic regions from SNP 55685 to 56286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:58,099 DEBUG Processing 281/681 atomic regions from SNP 84110 to 84710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:58,124 DEBUG Processing 270/643 atomic regions from SNP 80794 to 81394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:58,137 DEBUG Processing 188/513 atomic regions from SNP 56256 to 56856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:58,209 DEBUG Processing 591/680 atomic regions from SNP 177088 to 177688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:58,251 DEBUG Processing 175/561 atomic regions from SNP 52374 to 52975 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:58,307 DEBUG Processing 187/599 atomic regions from SNP 55986 to 56587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:58,318 DEBUG Processing 282/681 atomic regions from SNP 84410 to 85010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:58,327 DEBUG Processing 189/513 atomic regions from SNP 56556 to 57156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:58,352 DEBUG Processing 271/643 atomic regions from SNP 81094 to 81694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:58,445 DEBUG Processing 592/680 atomic regions from SNP 177388 to 177988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:58,453 DEBUG Processing 176/561 atomic regions from SNP 52675 to 53276 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:58,524 DEBUG Processing 190/513 atomic regions from SNP 56856 to 57456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:58,531 DEBUG Processing 188/599 atomic regions from SNP 56287 to 56888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:58,542 DEBUG Processing 283/681 atomic regions from SNP 84710 to 85310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:58,580 DEBUG Processing 272/643 atomic regions from SNP 81394 to 81994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:58,647 DEBUG Processing 177/561 atomic regions from SNP 52976 to 53577 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:58,678 DEBUG Processing 593/680 atomic regions from SNP 177688 to 178288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:58,718 DEBUG Processing 191/513 atomic regions from SNP 57156 to 57756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:58,751 DEBUG Processing 189/599 atomic regions from SNP 56588 to 57189 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:58,762 DEBUG Processing 284/681 atomic regions from SNP 85010 to 85610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:58,800 DEBUG Processing 273/643 atomic regions from SNP 81694 to 82294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:58,848 DEBUG Processing 178/561 atomic regions from SNP 53277 to 53878 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:58,912 DEBUG Processing 192/513 atomic regions from SNP 57456 to 58056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:58,917 DEBUG Processing 594/680 atomic regions from SNP 177988 to 178588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:58,973 DEBUG Processing 190/599 atomic regions from SNP 56889 to 57490 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:58,980 DEBUG Processing 285/681 atomic regions from SNP 85310 to 85910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:59,015 DEBUG Processing 274/643 atomic regions from SNP 81994 to 82594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:59,043 DEBUG Processing 179/561 atomic regions from SNP 53578 to 54179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:59,104 DEBUG Processing 193/513 atomic regions from SNP 57756 to 58356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:59,152 DEBUG Processing 595/680 atomic regions from SNP 178288 to 178888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:59,194 DEBUG Processing 191/599 atomic regions from SNP 57190 to 57791 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:59,194 DEBUG Processing 286/681 atomic regions from SNP 85610 to 86210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:59,233 DEBUG Processing 275/643 atomic regions from SNP 82294 to 82894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:59,234 DEBUG Processing 180/561 atomic regions from SNP 53879 to 54480 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:59,289 DEBUG Processing 194/513 atomic regions from SNP 58056 to 58656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:59,387 DEBUG Processing 596/680 atomic regions from SNP 178588 to 179188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:59,413 DEBUG Processing 287/681 atomic regions from SNP 85910 to 86510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:59,418 DEBUG Processing 192/599 atomic regions from SNP 57491 to 58092 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:59,433 DEBUG Processing 181/561 atomic regions from SNP 54180 to 54781 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:59,455 DEBUG Processing 276/643 atomic regions from SNP 82594 to 83194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:59,472 DEBUG Processing 195/513 atomic regions from SNP 58356 to 58956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:59,621 DEBUG Processing 597/680 atomic regions from SNP 178888 to 179488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:59,635 DEBUG Processing 288/681 atomic regions from SNP 86210 to 86810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:59,637 DEBUG Processing 182/561 atomic regions from SNP 54481 to 55082 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:59,646 DEBUG Processing 193/599 atomic regions from SNP 57792 to 58393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:59,665 DEBUG Processing 196/513 atomic regions from SNP 58656 to 59256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:59,681 DEBUG Processing 277/643 atomic regions from SNP 82894 to 83494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:47:59,840 DEBUG Processing 183/561 atomic regions from SNP 54782 to 55383 for chr15 (subchromosome 1 of 1). 2025-01-31 09:47:59,850 DEBUG Processing 598/680 atomic regions from SNP 179188 to 179788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:59,856 DEBUG Processing 289/681 atomic regions from SNP 86510 to 87110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:47:59,860 DEBUG Processing 197/513 atomic regions from SNP 58956 to 59556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:47:59,867 DEBUG Processing 194/599 atomic regions from SNP 58093 to 58694 for chr12 (subchromosome 1 of 1). 2025-01-31 09:47:59,911 DEBUG Processing 278/643 atomic regions from SNP 83194 to 83794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:00,037 DEBUG Processing 184/561 atomic regions from SNP 55083 to 55684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:00,054 DEBUG Processing 198/513 atomic regions from SNP 59256 to 59856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:00,075 DEBUG Processing 290/681 atomic regions from SNP 86810 to 87410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:00,081 DEBUG Processing 599/680 atomic regions from SNP 179488 to 180088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:00,084 DEBUG Processing 195/599 atomic regions from SNP 58394 to 58995 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:00,136 DEBUG Processing 279/643 atomic regions from SNP 83494 to 84094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:00,234 DEBUG Processing 185/561 atomic regions from SNP 55384 to 55985 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:00,246 DEBUG Processing 199/513 atomic regions from SNP 59556 to 60156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:00,293 DEBUG Processing 291/681 atomic regions from SNP 87110 to 87710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:00,303 DEBUG Processing 196/599 atomic regions from SNP 58695 to 59296 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:00,326 DEBUG Processing 600/680 atomic regions from SNP 179788 to 180388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:00,362 DEBUG Processing 280/643 atomic regions from SNP 83794 to 84394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:00,433 DEBUG Processing 186/561 atomic regions from SNP 55685 to 56286 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:00,437 DEBUG Processing 200/513 atomic regions from SNP 59856 to 60456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:00,507 DEBUG Processing 292/681 atomic regions from SNP 87410 to 88010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:00,520 DEBUG Processing 197/599 atomic regions from SNP 58996 to 59597 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:00,567 DEBUG Processing 601/680 atomic regions from SNP 180088 to 180688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:00,584 DEBUG Processing 281/643 atomic regions from SNP 84094 to 84694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:00,631 DEBUG Processing 201/513 atomic regions from SNP 60156 to 60756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:00,636 DEBUG Processing 187/561 atomic regions from SNP 55986 to 56587 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:00,719 DEBUG Processing 293/681 atomic regions from SNP 87710 to 88310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:00,742 DEBUG Processing 198/599 atomic regions from SNP 59297 to 59898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:00,802 DEBUG Processing 602/680 atomic regions from SNP 180388 to 180988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:00,809 DEBUG Processing 282/643 atomic regions from SNP 84394 to 84994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:00,821 DEBUG Processing 202/513 atomic regions from SNP 60456 to 61056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:00,860 DEBUG Processing 188/561 atomic regions from SNP 56287 to 56888 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:00,939 DEBUG Processing 294/681 atomic regions from SNP 88010 to 88610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:00,970 DEBUG Processing 199/599 atomic regions from SNP 59598 to 60199 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:01,011 DEBUG Processing 203/513 atomic regions from SNP 60756 to 61356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:01,037 DEBUG Processing 283/643 atomic regions from SNP 84694 to 85294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:01,043 DEBUG Processing 603/680 atomic regions from SNP 180688 to 181288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:01,059 DEBUG Processing 189/561 atomic regions from SNP 56588 to 57189 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:01,155 DEBUG Processing 295/681 atomic regions from SNP 88310 to 88910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:01,197 DEBUG Processing 200/599 atomic regions from SNP 59899 to 60500 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:01,210 DEBUG Processing 204/513 atomic regions from SNP 61056 to 61656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:01,262 DEBUG Processing 190/561 atomic regions from SNP 56889 to 57490 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:01,266 DEBUG Processing 284/643 atomic regions from SNP 84994 to 85594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:01,282 DEBUG Processing 604/680 atomic regions from SNP 180988 to 181588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:01,364 DEBUG Processing 296/681 atomic regions from SNP 88610 to 89210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:01,401 DEBUG Processing 205/513 atomic regions from SNP 61356 to 61956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:01,417 DEBUG Processing 201/599 atomic regions from SNP 60200 to 60801 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:01,464 DEBUG Processing 191/561 atomic regions from SNP 57190 to 57791 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:01,512 DEBUG Processing 285/643 atomic regions from SNP 85294 to 85894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:01,525 DEBUG Processing 605/680 atomic regions from SNP 181288 to 181888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:01,584 DEBUG Processing 297/681 atomic regions from SNP 88910 to 89510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:01,592 DEBUG Processing 206/513 atomic regions from SNP 61656 to 62256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:01,638 DEBUG Processing 202/599 atomic regions from SNP 60501 to 61102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:01,663 DEBUG Processing 192/561 atomic regions from SNP 57491 to 58092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:01,772 DEBUG Processing 286/643 atomic regions from SNP 85594 to 86194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:01,775 DEBUG Processing 606/680 atomic regions from SNP 181588 to 182188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:01,789 DEBUG Processing 207/513 atomic regions from SNP 61956 to 62556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:01,829 DEBUG Processing 298/681 atomic regions from SNP 89210 to 89810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:01,853 DEBUG Processing 203/599 atomic regions from SNP 60802 to 61402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:01,858 DEBUG Processing 193/561 atomic regions from SNP 57792 to 58393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:01,986 DEBUG Processing 208/513 atomic regions from SNP 62256 to 62856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:02,012 DEBUG Processing 287/643 atomic regions from SNP 85894 to 86494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:02,022 DEBUG Processing 607/680 atomic regions from SNP 181888 to 182488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:02,053 DEBUG Processing 299/681 atomic regions from SNP 89510 to 90110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:02,060 DEBUG Processing 194/561 atomic regions from SNP 58093 to 58694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:02,076 DEBUG Processing 204/599 atomic regions from SNP 61102 to 61702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:02,175 DEBUG Processing 209/513 atomic regions from SNP 62556 to 63156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:02,244 DEBUG Processing 288/643 atomic regions from SNP 86194 to 86794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:02,266 DEBUG Processing 195/561 atomic regions from SNP 58394 to 58995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:02,268 DEBUG Processing 608/680 atomic regions from SNP 182188 to 182788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:02,277 DEBUG Processing 300/681 atomic regions from SNP 89810 to 90410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:02,301 DEBUG Processing 205/599 atomic regions from SNP 61402 to 62002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:02,357 DEBUG Processing 210/513 atomic regions from SNP 62856 to 63456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:02,468 DEBUG Processing 196/561 atomic regions from SNP 58695 to 59296 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:02,486 DEBUG Processing 289/643 atomic regions from SNP 86494 to 87094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:02,499 DEBUG Processing 301/681 atomic regions from SNP 90110 to 90710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:02,513 DEBUG Processing 609/680 atomic regions from SNP 182488 to 183088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:02,529 DEBUG Processing 206/599 atomic regions from SNP 61702 to 62302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:02,547 DEBUG Processing 211/513 atomic regions from SNP 63156 to 63756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:02,664 DEBUG Processing 197/561 atomic regions from SNP 58996 to 59597 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:02,735 DEBUG Processing 290/643 atomic regions from SNP 86794 to 87394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:02,740 DEBUG Processing 302/681 atomic regions from SNP 90410 to 91010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:02,747 DEBUG Processing 212/513 atomic regions from SNP 63456 to 64056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:02,760 DEBUG Processing 207/599 atomic regions from SNP 62002 to 62602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:02,763 DEBUG Processing 610/680 atomic regions from SNP 182788 to 183388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:02,866 DEBUG Processing 198/561 atomic regions from SNP 59297 to 59898 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:02,942 DEBUG Processing 213/513 atomic regions from SNP 63756 to 64356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:02,966 DEBUG Processing 303/681 atomic regions from SNP 90710 to 91310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:02,990 DEBUG Processing 208/599 atomic regions from SNP 62302 to 62902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:02,996 DEBUG Processing 291/643 atomic regions from SNP 87094 to 87694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:03,011 DEBUG Processing 611/680 atomic regions from SNP 183088 to 183688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:03,063 DEBUG Processing 199/561 atomic regions from SNP 59598 to 60199 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:03,131 DEBUG Processing 214/513 atomic regions from SNP 64056 to 64656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:03,181 DEBUG Processing 304/681 atomic regions from SNP 91010 to 91610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:03,216 DEBUG Processing 209/599 atomic regions from SNP 62602 to 63202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:03,250 DEBUG Processing 292/643 atomic regions from SNP 87394 to 87994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:03,254 DEBUG Processing 612/680 atomic regions from SNP 183388 to 183988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:03,261 DEBUG Processing 200/561 atomic regions from SNP 59899 to 60500 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:03,332 DEBUG Processing 215/513 atomic regions from SNP 64356 to 64956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:03,404 DEBUG Processing 305/681 atomic regions from SNP 91310 to 91910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:03,437 DEBUG Processing 210/599 atomic regions from SNP 62902 to 63502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:03,452 DEBUG Processing 201/561 atomic regions from SNP 60200 to 60801 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:03,479 DEBUG Processing 293/643 atomic regions from SNP 87694 to 88294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:03,492 DEBUG Processing 613/680 atomic regions from SNP 183688 to 184288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:03,520 DEBUG Processing 216/513 atomic regions from SNP 64656 to 65256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:03,632 DEBUG Processing 306/681 atomic regions from SNP 91610 to 92210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:03,657 DEBUG Processing 202/561 atomic regions from SNP 60501 to 61102 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:03,660 DEBUG Processing 211/599 atomic regions from SNP 63202 to 63802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:03,704 DEBUG Processing 217/513 atomic regions from SNP 64956 to 65556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:03,709 DEBUG Processing 294/643 atomic regions from SNP 87994 to 88594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:03,731 DEBUG Processing 614/680 atomic regions from SNP 183988 to 184588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:03,855 DEBUG Processing 307/681 atomic regions from SNP 91910 to 92510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:03,866 DEBUG Processing 203/561 atomic regions from SNP 60802 to 61403 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:03,888 DEBUG Processing 212/599 atomic regions from SNP 63502 to 64102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:03,903 DEBUG Processing 218/513 atomic regions from SNP 65256 to 65856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:03,940 DEBUG Processing 295/643 atomic regions from SNP 88294 to 88894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:03,976 DEBUG Processing 615/680 atomic regions from SNP 184288 to 184888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:04,066 DEBUG Processing 204/561 atomic regions from SNP 61103 to 61704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:04,073 DEBUG Processing 308/681 atomic regions from SNP 92210 to 92810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:04,099 DEBUG Processing 219/513 atomic regions from SNP 65556 to 66156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:04,104 DEBUG Processing 213/599 atomic regions from SNP 63802 to 64402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:04,164 DEBUG Processing 296/643 atomic regions from SNP 88594 to 89194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:04,220 DEBUG Processing 616/680 atomic regions from SNP 184588 to 185188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:04,268 DEBUG Processing 205/561 atomic regions from SNP 61404 to 62005 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:04,294 DEBUG Processing 309/681 atomic regions from SNP 92510 to 93110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:04,295 DEBUG Processing 220/513 atomic regions from SNP 65856 to 66456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:04,322 DEBUG Processing 214/599 atomic regions from SNP 64102 to 64702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:04,377 DEBUG Processing 297/643 atomic regions from SNP 88894 to 89494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:04,457 DEBUG Processing 617/680 atomic regions from SNP 184888 to 185488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:04,467 DEBUG Processing 206/561 atomic regions from SNP 61705 to 62306 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:04,490 DEBUG Processing 221/513 atomic regions from SNP 66156 to 66756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:04,523 DEBUG Processing 310/681 atomic regions from SNP 92810 to 93410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:04,553 DEBUG Processing 215/599 atomic regions from SNP 64402 to 65002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:04,599 DEBUG Processing 298/643 atomic regions from SNP 89194 to 89794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:04,668 DEBUG Processing 207/561 atomic regions from SNP 62006 to 62607 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:04,685 DEBUG Processing 222/513 atomic regions from SNP 66456 to 67056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:04,691 DEBUG Processing 618/680 atomic regions from SNP 185188 to 185788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:04,741 DEBUG Processing 311/681 atomic regions from SNP 93110 to 93710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:04,784 DEBUG Processing 216/599 atomic regions from SNP 64702 to 65302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:04,829 DEBUG Processing 299/643 atomic regions from SNP 89494 to 90094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:04,867 DEBUG Processing 208/561 atomic regions from SNP 62307 to 62908 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:04,880 DEBUG Processing 223/513 atomic regions from SNP 66756 to 67356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:04,926 DEBUG Processing 619/680 atomic regions from SNP 185488 to 186088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:04,962 DEBUG Processing 312/681 atomic regions from SNP 93410 to 94010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:05,008 DEBUG Processing 217/599 atomic regions from SNP 65002 to 65602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:05,053 DEBUG Processing 300/643 atomic regions from SNP 89794 to 90394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:05,060 DEBUG Processing 209/561 atomic regions from SNP 62608 to 63209 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:05,066 DEBUG Processing 224/513 atomic regions from SNP 67056 to 67656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:05,155 DEBUG Processing 620/680 atomic regions from SNP 185788 to 186388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:05,179 DEBUG Processing 313/681 atomic regions from SNP 93710 to 94310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:05,233 DEBUG Processing 218/599 atomic regions from SNP 65302 to 65902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:05,260 DEBUG Processing 225/513 atomic regions from SNP 67356 to 67956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:05,264 DEBUG Processing 210/561 atomic regions from SNP 62909 to 63510 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:05,278 DEBUG Processing 301/643 atomic regions from SNP 90094 to 90694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:05,382 DEBUG Processing 621/680 atomic regions from SNP 186088 to 186688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:05,391 DEBUG Processing 314/681 atomic regions from SNP 94010 to 94610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:05,459 DEBUG Processing 219/599 atomic regions from SNP 65602 to 66202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:05,459 DEBUG Processing 226/513 atomic regions from SNP 67656 to 68256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:05,469 DEBUG Processing 211/561 atomic regions from SNP 63210 to 63811 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:05,508 DEBUG Processing 302/643 atomic regions from SNP 90394 to 90994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:05,602 DEBUG Processing 315/681 atomic regions from SNP 94310 to 94910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:05,606 DEBUG Processing 622/680 atomic regions from SNP 186388 to 186988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:05,653 DEBUG Processing 227/513 atomic regions from SNP 67956 to 68556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:05,670 DEBUG Processing 212/561 atomic regions from SNP 63511 to 64112 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:05,688 DEBUG Processing 220/599 atomic regions from SNP 65902 to 66502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:05,745 DEBUG Processing 303/643 atomic regions from SNP 90694 to 91294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:05,821 DEBUG Processing 316/681 atomic regions from SNP 94610 to 95210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:05,841 DEBUG Processing 623/680 atomic regions from SNP 186688 to 187288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:05,845 DEBUG Processing 228/513 atomic regions from SNP 68256 to 68856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:05,869 DEBUG Processing 213/561 atomic regions from SNP 63812 to 64413 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:05,907 DEBUG Processing 221/599 atomic regions from SNP 66202 to 66802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:05,980 DEBUG Processing 304/643 atomic regions from SNP 90994 to 91594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:06,046 DEBUG Processing 229/513 atomic regions from SNP 68556 to 69156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:06,047 DEBUG Processing 317/681 atomic regions from SNP 94910 to 95510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:06,074 DEBUG Processing 214/561 atomic regions from SNP 64113 to 64714 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:06,082 DEBUG Processing 624/680 atomic regions from SNP 186988 to 187588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:06,124 DEBUG Processing 222/599 atomic regions from SNP 66502 to 67102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:06,204 DEBUG Processing 305/643 atomic regions from SNP 91294 to 91894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:06,252 DEBUG Processing 230/513 atomic regions from SNP 68856 to 69456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:06,274 DEBUG Processing 318/681 atomic regions from SNP 95210 to 95810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:06,284 DEBUG Processing 215/561 atomic regions from SNP 64414 to 65015 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:06,334 DEBUG Processing 625/680 atomic regions from SNP 187288 to 187888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:06,353 DEBUG Processing 223/599 atomic regions from SNP 66802 to 67402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:06,423 DEBUG Processing 306/643 atomic regions from SNP 91594 to 92194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:06,438 DEBUG Processing 231/513 atomic regions from SNP 69156 to 69756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:06,485 DEBUG Processing 216/561 atomic regions from SNP 64715 to 65316 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:06,491 DEBUG Processing 319/681 atomic regions from SNP 95510 to 96110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:06,583 DEBUG Processing 626/680 atomic regions from SNP 187588 to 188188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:06,585 DEBUG Processing 224/599 atomic regions from SNP 67102 to 67702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:06,631 DEBUG Processing 232/513 atomic regions from SNP 69456 to 70056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:06,659 DEBUG Processing 307/643 atomic regions from SNP 91894 to 92494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:06,679 DEBUG Processing 217/561 atomic regions from SNP 65016 to 65617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:06,701 DEBUG Processing 320/681 atomic regions from SNP 95810 to 96410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:06,816 DEBUG Processing 225/599 atomic regions from SNP 67402 to 68002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:06,828 DEBUG Processing 627/680 atomic regions from SNP 187888 to 188488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:06,833 DEBUG Processing 233/513 atomic regions from SNP 69756 to 70356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:06,887 DEBUG Processing 218/561 atomic regions from SNP 65317 to 65918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:06,918 DEBUG Processing 308/643 atomic regions from SNP 92194 to 92794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:06,923 DEBUG Processing 321/681 atomic regions from SNP 96110 to 96710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:07,024 DEBUG Processing 234/513 atomic regions from SNP 70056 to 70656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:07,036 DEBUG Processing 226/599 atomic regions from SNP 67702 to 68302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:07,065 DEBUG Processing 628/680 atomic regions from SNP 188188 to 188788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:07,086 DEBUG Processing 219/561 atomic regions from SNP 65618 to 66219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:07,143 DEBUG Processing 322/681 atomic regions from SNP 96410 to 97010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:07,154 DEBUG Processing 309/643 atomic regions from SNP 92494 to 93094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:07,216 DEBUG Processing 235/513 atomic regions from SNP 70356 to 70956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:07,251 DEBUG Processing 227/599 atomic regions from SNP 68002 to 68602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:07,280 DEBUG Processing 220/561 atomic regions from SNP 65919 to 66520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:07,295 DEBUG Processing 629/680 atomic regions from SNP 188488 to 189088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:07,350 DEBUG Processing 323/681 atomic regions from SNP 96710 to 97310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:07,386 DEBUG Processing 310/643 atomic regions from SNP 92794 to 93394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:07,413 DEBUG Processing 236/513 atomic regions from SNP 70656 to 71256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:07,470 DEBUG Processing 228/599 atomic regions from SNP 68302 to 68902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:07,483 DEBUG Processing 221/561 atomic regions from SNP 66220 to 66821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:07,528 DEBUG Processing 630/680 atomic regions from SNP 188788 to 189388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:07,571 DEBUG Processing 324/681 atomic regions from SNP 97010 to 97610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:07,599 DEBUG Processing 237/513 atomic regions from SNP 70956 to 71556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:07,612 DEBUG Processing 311/643 atomic regions from SNP 93094 to 93694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:07,687 DEBUG Processing 222/561 atomic regions from SNP 66521 to 67122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:07,690 DEBUG Processing 229/599 atomic regions from SNP 68602 to 69202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:07,762 DEBUG Processing 631/680 atomic regions from SNP 189088 to 189688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:07,789 DEBUG Processing 325/681 atomic regions from SNP 97310 to 97910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:07,790 DEBUG Processing 238/513 atomic regions from SNP 71256 to 71856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:07,846 DEBUG Processing 312/643 atomic regions from SNP 93394 to 93994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:07,882 DEBUG Processing 223/561 atomic regions from SNP 66822 to 67423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:07,905 DEBUG Processing 230/599 atomic regions from SNP 68902 to 69502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:07,981 DEBUG Processing 239/513 atomic regions from SNP 71556 to 72156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:07,985 DEBUG Processing 632/680 atomic regions from SNP 189388 to 189988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:08,006 DEBUG Processing 326/681 atomic regions from SNP 97610 to 98210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:08,083 DEBUG Processing 313/643 atomic regions from SNP 93694 to 94294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:08,088 DEBUG Processing 224/561 atomic regions from SNP 67123 to 67724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:08,133 DEBUG Processing 231/599 atomic regions from SNP 69202 to 69802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:08,167 DEBUG Processing 240/513 atomic regions from SNP 71856 to 72456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:08,209 DEBUG Processing 633/680 atomic regions from SNP 189688 to 190288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:08,214 DEBUG Processing 327/681 atomic regions from SNP 97910 to 98510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:08,285 DEBUG Processing 225/561 atomic regions from SNP 67424 to 68025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:08,310 DEBUG Processing 314/643 atomic regions from SNP 93994 to 94594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:08,364 DEBUG Processing 241/513 atomic regions from SNP 72156 to 72756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:08,373 DEBUG Processing 232/599 atomic regions from SNP 69502 to 70102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:08,430 DEBUG Processing 328/681 atomic regions from SNP 98210 to 98810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:08,443 DEBUG Processing 634/680 atomic regions from SNP 189988 to 190588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:08,475 DEBUG Processing 226/561 atomic regions from SNP 67725 to 68326 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:08,519 DEBUG Processing 315/643 atomic regions from SNP 94294 to 94894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:08,557 DEBUG Processing 242/513 atomic regions from SNP 72456 to 73056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:08,602 DEBUG Processing 233/599 atomic regions from SNP 69802 to 70402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:08,648 DEBUG Processing 329/681 atomic regions from SNP 98510 to 99110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:08,677 DEBUG Processing 227/561 atomic regions from SNP 68026 to 68627 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:08,682 DEBUG Processing 635/680 atomic regions from SNP 190288 to 190888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:08,735 DEBUG Processing 316/643 atomic regions from SNP 94594 to 95194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:08,745 DEBUG Processing 243/513 atomic regions from SNP 72756 to 73356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:08,816 DEBUG Processing 234/599 atomic regions from SNP 70102 to 70702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:08,862 DEBUG Processing 330/681 atomic regions from SNP 98810 to 99410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:08,872 DEBUG Processing 228/561 atomic regions from SNP 68327 to 68928 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:08,922 DEBUG Processing 636/680 atomic regions from SNP 190588 to 191188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:08,941 DEBUG Processing 244/513 atomic regions from SNP 73056 to 73656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:08,963 DEBUG Processing 317/643 atomic regions from SNP 94894 to 95494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:09,036 DEBUG Processing 235/599 atomic regions from SNP 70402 to 71002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:09,068 DEBUG Processing 229/561 atomic regions from SNP 68628 to 69229 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:09,074 DEBUG Processing 331/681 atomic regions from SNP 99110 to 99710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:09,127 DEBUG Processing 245/513 atomic regions from SNP 73356 to 73956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:09,154 DEBUG Processing 637/680 atomic regions from SNP 190888 to 191488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:09,195 DEBUG Processing 318/643 atomic regions from SNP 95194 to 95794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:09,264 DEBUG Processing 236/599 atomic regions from SNP 70702 to 71302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:09,276 DEBUG Processing 230/561 atomic regions from SNP 68929 to 69530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:09,301 DEBUG Processing 332/681 atomic regions from SNP 99410 to 100010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:09,318 DEBUG Processing 246/513 atomic regions from SNP 73656 to 74256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:09,394 DEBUG Processing 638/680 atomic regions from SNP 191188 to 191788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:09,420 DEBUG Processing 319/643 atomic regions from SNP 95494 to 96094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:09,483 DEBUG Processing 231/561 atomic regions from SNP 69230 to 69831 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:09,483 DEBUG Processing 237/599 atomic regions from SNP 71002 to 71602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:09,521 DEBUG Processing 247/513 atomic regions from SNP 73956 to 74556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:09,533 DEBUG Processing 333/681 atomic regions from SNP 99710 to 100310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:09,639 DEBUG Processing 639/680 atomic regions from SNP 191488 to 192088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:09,652 DEBUG Processing 320/643 atomic regions from SNP 95794 to 96394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:09,686 DEBUG Processing 232/561 atomic regions from SNP 69531 to 70132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:09,704 DEBUG Processing 238/599 atomic regions from SNP 71302 to 71902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:09,718 DEBUG Processing 248/513 atomic regions from SNP 74256 to 74856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:09,755 DEBUG Processing 334/681 atomic regions from SNP 100010 to 100610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:09,887 DEBUG Processing 640/680 atomic regions from SNP 191788 to 192388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:09,888 DEBUG Processing 321/643 atomic regions from SNP 96094 to 96694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:09,895 DEBUG Processing 233/561 atomic regions from SNP 69832 to 70433 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:09,921 DEBUG Processing 249/513 atomic regions from SNP 74556 to 75156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:09,938 DEBUG Processing 239/599 atomic regions from SNP 71602 to 72202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:09,978 DEBUG Processing 335/681 atomic regions from SNP 100310 to 100910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:10,094 DEBUG Processing 234/561 atomic regions from SNP 70133 to 70734 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:10,119 DEBUG Processing 250/513 atomic regions from SNP 74856 to 75456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:10,120 DEBUG Processing 322/643 atomic regions from SNP 96394 to 96994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:10,131 DEBUG Processing 641/680 atomic regions from SNP 192088 to 192688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:10,171 DEBUG Processing 240/599 atomic regions from SNP 71902 to 72502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:10,203 DEBUG Processing 336/681 atomic regions from SNP 100610 to 101210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:10,284 DEBUG Processing 235/561 atomic regions from SNP 70434 to 71035 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:10,304 DEBUG Processing 251/513 atomic regions from SNP 75156 to 75756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:10,341 DEBUG Processing 323/643 atomic regions from SNP 96694 to 97294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:10,366 DEBUG Processing 642/680 atomic regions from SNP 192388 to 192988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:10,392 DEBUG Processing 241/599 atomic regions from SNP 72202 to 72802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:10,425 DEBUG Processing 337/681 atomic regions from SNP 100910 to 101510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:10,485 DEBUG Processing 236/561 atomic regions from SNP 70735 to 71336 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:10,492 DEBUG Processing 252/513 atomic regions from SNP 75456 to 76056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:10,567 DEBUG Processing 324/643 atomic regions from SNP 96994 to 97594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:10,600 DEBUG Processing 643/680 atomic regions from SNP 192688 to 193288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:10,610 DEBUG Processing 242/599 atomic regions from SNP 72502 to 73102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:10,638 DEBUG Processing 338/681 atomic regions from SNP 101210 to 101810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:10,688 DEBUG Processing 253/513 atomic regions from SNP 75756 to 76356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:10,688 DEBUG Processing 237/561 atomic regions from SNP 71036 to 71637 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:10,802 DEBUG Processing 325/643 atomic regions from SNP 97294 to 97894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:10,839 DEBUG Processing 243/599 atomic regions from SNP 72802 to 73402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:10,844 DEBUG Processing 644/680 atomic regions from SNP 192988 to 193588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:10,855 DEBUG Processing 339/681 atomic regions from SNP 101510 to 102110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:10,877 DEBUG Processing 254/513 atomic regions from SNP 76056 to 76656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:10,885 DEBUG Processing 238/561 atomic regions from SNP 71337 to 71938 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:11,028 DEBUG Processing 326/643 atomic regions from SNP 97594 to 98194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:11,074 DEBUG Processing 255/513 atomic regions from SNP 76356 to 76956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:11,075 DEBUG Processing 244/599 atomic regions from SNP 73102 to 73702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:11,083 DEBUG Processing 340/681 atomic regions from SNP 101810 to 102410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:11,089 DEBUG Processing 239/561 atomic regions from SNP 71638 to 72239 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:11,095 DEBUG Processing 645/680 atomic regions from SNP 193288 to 193888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:11,241 DEBUG Processing 327/643 atomic regions from SNP 97894 to 98494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:11,270 DEBUG Processing 256/513 atomic regions from SNP 76656 to 77256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:11,292 DEBUG Processing 240/561 atomic regions from SNP 71939 to 72540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:11,296 DEBUG Processing 245/599 atomic regions from SNP 73402 to 74002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:11,303 DEBUG Processing 341/681 atomic regions from SNP 102110 to 102710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:11,336 DEBUG Processing 646/680 atomic regions from SNP 193588 to 194188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:11,460 DEBUG Processing 257/513 atomic regions from SNP 76956 to 77556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:11,460 DEBUG Processing 328/643 atomic regions from SNP 98194 to 98794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:11,490 DEBUG Processing 241/561 atomic regions from SNP 72240 to 72841 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:11,509 DEBUG Processing 246/599 atomic regions from SNP 73702 to 74302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:11,521 DEBUG Processing 342/681 atomic regions from SNP 102410 to 103010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:11,560 DEBUG Processing 647/680 atomic regions from SNP 193888 to 194488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:11,649 DEBUG Processing 258/513 atomic regions from SNP 77256 to 77856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:11,685 DEBUG Processing 329/643 atomic regions from SNP 98494 to 99094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:11,691 DEBUG Processing 242/561 atomic regions from SNP 72541 to 73142 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:11,732 DEBUG Processing 247/599 atomic regions from SNP 74002 to 74602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:11,737 DEBUG Processing 343/681 atomic regions from SNP 102710 to 103310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:11,792 DEBUG Processing 648/680 atomic regions from SNP 194188 to 194788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:11,838 DEBUG Processing 259/513 atomic regions from SNP 77556 to 78156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:11,892 DEBUG Processing 243/561 atomic regions from SNP 72842 to 73443 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:11,907 DEBUG Processing 330/643 atomic regions from SNP 98794 to 99394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:11,956 DEBUG Processing 344/681 atomic regions from SNP 103010 to 103610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:11,957 DEBUG Processing 248/599 atomic regions from SNP 74302 to 74902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:12,026 DEBUG Processing 260/513 atomic regions from SNP 77856 to 78456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:12,027 DEBUG Processing 649/680 atomic regions from SNP 194488 to 195088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:12,090 DEBUG Processing 244/561 atomic regions from SNP 73143 to 73744 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:12,129 DEBUG Processing 331/643 atomic regions from SNP 99094 to 99694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:12,175 DEBUG Processing 345/681 atomic regions from SNP 103310 to 103910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:12,178 DEBUG Processing 249/599 atomic regions from SNP 74602 to 75202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:12,221 DEBUG Processing 261/513 atomic regions from SNP 78156 to 78756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:12,270 DEBUG Processing 650/680 atomic regions from SNP 194788 to 195388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:12,291 DEBUG Processing 245/561 atomic regions from SNP 73444 to 74045 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:12,360 DEBUG Processing 332/643 atomic regions from SNP 99394 to 99994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:12,393 DEBUG Processing 346/681 atomic regions from SNP 103610 to 104210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:12,398 DEBUG Processing 250/599 atomic regions from SNP 74902 to 75502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:12,414 DEBUG Processing 262/513 atomic regions from SNP 78456 to 79056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:12,490 DEBUG Processing 246/561 atomic regions from SNP 73745 to 74346 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:12,505 DEBUG Processing 651/680 atomic regions from SNP 195088 to 195688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:12,597 DEBUG Processing 333/643 atomic regions from SNP 99694 to 100294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:12,613 DEBUG Processing 263/513 atomic regions from SNP 78756 to 79356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:12,616 DEBUG Processing 347/681 atomic regions from SNP 103910 to 104510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:12,632 DEBUG Processing 251/599 atomic regions from SNP 75202 to 75802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:12,687 DEBUG Processing 247/561 atomic regions from SNP 74046 to 74647 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:12,743 DEBUG Processing 652/680 atomic regions from SNP 195388 to 195988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:12,812 DEBUG Processing 264/513 atomic regions from SNP 79056 to 79656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:12,825 DEBUG Processing 334/643 atomic regions from SNP 99994 to 100594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:12,843 DEBUG Processing 348/681 atomic regions from SNP 104210 to 104810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:12,867 DEBUG Processing 252/599 atomic regions from SNP 75502 to 76102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:12,896 DEBUG Processing 248/561 atomic regions from SNP 74347 to 74948 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:12,984 DEBUG Processing 653/680 atomic regions from SNP 195688 to 196288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,000 DEBUG Processing 265/513 atomic regions from SNP 79356 to 79956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:13,057 DEBUG Processing 335/643 atomic regions from SNP 100294 to 100894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:13,060 DEBUG Processing 349/681 atomic regions from SNP 104510 to 105110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:13,089 DEBUG Processing 253/599 atomic regions from SNP 75802 to 76402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:13,095 DEBUG Processing 249/561 atomic regions from SNP 74648 to 75249 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:13,195 DEBUG Processing 266/513 atomic regions from SNP 79656 to 80256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:13,229 DEBUG Processing 654/680 atomic regions from SNP 195988 to 196588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,277 DEBUG Processing 350/681 atomic regions from SNP 104810 to 105410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:13,289 DEBUG Processing 250/561 atomic regions from SNP 74949 to 75550 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:13,295 DEBUG Processing 336/643 atomic regions from SNP 100594 to 101194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:13,311 DEBUG Processing 254/599 atomic regions from SNP 76102 to 76702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:13,378 DEBUG Processing 267/513 atomic regions from SNP 79956 to 80556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:13,468 DEBUG Processing 655/680 atomic regions from SNP 196288 to 196888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,491 DEBUG Processing 251/561 atomic regions from SNP 75250 to 75851 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:13,498 DEBUG Processing 351/681 atomic regions from SNP 105110 to 105710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:13,534 DEBUG Processing 337/643 atomic regions from SNP 100894 to 101494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:13,544 DEBUG Processing 255/599 atomic regions from SNP 76402 to 77002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:13,561 DEBUG Processing 268/513 atomic regions from SNP 80256 to 80856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:13,689 DEBUG Processing 252/561 atomic regions from SNP 75551 to 76152 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:13,706 DEBUG Processing 656/680 atomic regions from SNP 196588 to 197188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,715 DEBUG Processing 352/681 atomic regions from SNP 105410 to 106010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:13,753 DEBUG Processing 269/513 atomic regions from SNP 80556 to 81156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:13,776 DEBUG Processing 338/643 atomic regions from SNP 101194 to 101794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:13,782 DEBUG Processing 256/599 atomic regions from SNP 76702 to 77302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:13,884 DEBUG Processing 253/561 atomic regions from SNP 75852 to 76453 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:13,931 DEBUG Processing 353/681 atomic regions from SNP 105710 to 106310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:13,941 DEBUG Processing 657/680 atomic regions from SNP 196888 to 197488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,944 DEBUG Processing 270/513 atomic regions from SNP 80856 to 81456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:14,006 DEBUG Processing 339/643 atomic regions from SNP 101494 to 102094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:14,007 DEBUG Processing 257/599 atomic regions from SNP 77002 to 77602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:14,079 DEBUG Processing 254/561 atomic regions from SNP 76153 to 76754 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:14,142 DEBUG Processing 271/513 atomic regions from SNP 81156 to 81756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:14,153 DEBUG Processing 354/681 atomic regions from SNP 106010 to 106610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:14,182 DEBUG Processing 658/680 atomic regions from SNP 197188 to 197788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:14,236 DEBUG Processing 258/599 atomic regions from SNP 77302 to 77902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:14,265 DEBUG Processing 340/643 atomic regions from SNP 101794 to 102394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:14,267 DEBUG Processing 255/561 atomic regions from SNP 76454 to 77055 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:14,335 DEBUG Processing 272/513 atomic regions from SNP 81456 to 82056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:14,374 DEBUG Processing 355/681 atomic regions from SNP 106310 to 106910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:14,432 DEBUG Processing 659/680 atomic regions from SNP 197488 to 198088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:14,468 DEBUG Processing 256/561 atomic regions from SNP 76755 to 77356 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:14,471 DEBUG Processing 259/599 atomic regions from SNP 77602 to 78202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:14,508 DEBUG Processing 341/643 atomic regions from SNP 102094 to 102694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:14,518 DEBUG Processing 273/513 atomic regions from SNP 81756 to 82356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:14,584 DEBUG Processing 356/681 atomic regions from SNP 106610 to 107210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:14,667 DEBUG Processing 660/680 atomic regions from SNP 197788 to 198388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:14,670 DEBUG Processing 257/561 atomic regions from SNP 77056 to 77657 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:14,693 DEBUG Processing 260/599 atomic regions from SNP 77902 to 78502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:14,709 DEBUG Processing 274/513 atomic regions from SNP 82056 to 82656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:14,737 DEBUG Processing 342/643 atomic regions from SNP 102394 to 102994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:14,790 DEBUG Processing 357/681 atomic regions from SNP 106910 to 107510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:14,866 DEBUG Processing 258/561 atomic regions from SNP 77357 to 77958 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:14,901 DEBUG Processing 275/513 atomic regions from SNP 82356 to 82956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:14,902 DEBUG Processing 661/680 atomic regions from SNP 198088 to 198688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:14,914 DEBUG Processing 261/599 atomic regions from SNP 78202 to 78802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:14,968 DEBUG Processing 343/643 atomic regions from SNP 102694 to 103294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:15,002 DEBUG Processing 358/681 atomic regions from SNP 107210 to 107810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:15,057 DEBUG Processing 259/561 atomic regions from SNP 77658 to 78259 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:15,082 DEBUG Processing 276/513 atomic regions from SNP 82656 to 83256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:15,131 DEBUG Processing 262/599 atomic regions from SNP 78502 to 79102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:15,133 DEBUG Processing 662/680 atomic regions from SNP 198388 to 198988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,198 DEBUG Processing 344/643 atomic regions from SNP 102994 to 103594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:15,218 DEBUG Processing 359/681 atomic regions from SNP 107510 to 108110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:15,262 DEBUG Processing 260/561 atomic regions from SNP 77959 to 78560 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:15,277 DEBUG Processing 277/513 atomic regions from SNP 82956 to 83556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:15,352 DEBUG Processing 263/599 atomic regions from SNP 78802 to 79402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:15,369 DEBUG Processing 663/680 atomic regions from SNP 198688 to 199288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,419 DEBUG Processing 345/643 atomic regions from SNP 103294 to 103894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:15,427 DEBUG Processing 360/681 atomic regions from SNP 107810 to 108410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:15,463 DEBUG Processing 261/561 atomic regions from SNP 78260 to 78861 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:15,473 DEBUG Processing 278/513 atomic regions from SNP 83256 to 83856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:15,585 DEBUG Processing 264/599 atomic regions from SNP 79102 to 79702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:15,611 DEBUG Processing 664/680 atomic regions from SNP 198988 to 199588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,637 DEBUG Processing 361/681 atomic regions from SNP 108110 to 108710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:15,639 DEBUG Processing 346/643 atomic regions from SNP 103594 to 104194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:15,657 DEBUG Processing 262/561 atomic regions from SNP 78561 to 79162 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:15,660 DEBUG Processing 279/513 atomic regions from SNP 83556 to 84156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:15,819 DEBUG Processing 265/599 atomic regions from SNP 79402 to 80002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:15,856 DEBUG Processing 280/513 atomic regions from SNP 83856 to 84456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:15,856 DEBUG Processing 362/681 atomic regions from SNP 108410 to 109010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:15,861 DEBUG Processing 263/561 atomic regions from SNP 78862 to 79463 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:15,863 DEBUG Processing 665/680 atomic regions from SNP 199288 to 199888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,874 DEBUG Processing 347/643 atomic regions from SNP 103894 to 104494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:16,041 DEBUG Processing 266/599 atomic regions from SNP 79702 to 80302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:16,046 DEBUG Processing 281/513 atomic regions from SNP 84156 to 84756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:16,061 DEBUG Processing 264/561 atomic regions from SNP 79163 to 79764 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:16,101 DEBUG Processing 363/681 atomic regions from SNP 108710 to 109310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:16,105 DEBUG Processing 348/643 atomic regions from SNP 104194 to 104794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:16,106 DEBUG Processing 666/680 atomic regions from SNP 199588 to 200188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:16,234 DEBUG Processing 282/513 atomic regions from SNP 84456 to 85056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:16,252 DEBUG Processing 267/599 atomic regions from SNP 80002 to 80602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:16,257 DEBUG Processing 265/561 atomic regions from SNP 79464 to 80065 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:16,328 DEBUG Processing 349/643 atomic regions from SNP 104494 to 105094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:16,346 DEBUG Processing 364/681 atomic regions from SNP 109010 to 109610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:16,349 DEBUG Processing 667/680 atomic regions from SNP 199888 to 200488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:16,424 DEBUG Processing 283/513 atomic regions from SNP 84756 to 85356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:16,457 DEBUG Processing 266/561 atomic regions from SNP 79765 to 80366 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:16,465 DEBUG Processing 268/599 atomic regions from SNP 80302 to 80902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:16,557 DEBUG Processing 350/643 atomic regions from SNP 104794 to 105394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:16,577 DEBUG Processing 365/681 atomic regions from SNP 109310 to 109910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:16,590 DEBUG Processing 668/680 atomic regions from SNP 200188 to 200788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:16,611 DEBUG Processing 284/513 atomic regions from SNP 85056 to 85656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:16,650 DEBUG Processing 267/561 atomic regions from SNP 80066 to 80667 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:16,676 DEBUG Processing 269/599 atomic regions from SNP 80602 to 81202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:16,787 DEBUG Processing 351/643 atomic regions from SNP 105094 to 105694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:16,801 DEBUG Processing 285/513 atomic regions from SNP 85356 to 85956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:16,814 DEBUG Processing 366/681 atomic regions from SNP 109610 to 110210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:16,833 DEBUG Processing 669/680 atomic regions from SNP 200488 to 201088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:16,843 DEBUG Processing 268/561 atomic regions from SNP 80367 to 80968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:16,890 DEBUG Processing 270/599 atomic regions from SNP 80902 to 81502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:16,999 DEBUG Processing 286/513 atomic regions from SNP 85656 to 86256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:17,013 DEBUG Processing 352/643 atomic regions from SNP 105394 to 105994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:17,045 DEBUG Processing 269/561 atomic regions from SNP 80668 to 81269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:17,060 DEBUG Processing 367/681 atomic regions from SNP 109910 to 110510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:17,073 DEBUG Processing 670/680 atomic regions from SNP 200788 to 201388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,114 DEBUG Processing 271/599 atomic regions from SNP 81202 to 81802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:17,188 DEBUG Processing 287/513 atomic regions from SNP 85956 to 86556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:17,236 DEBUG Processing 353/643 atomic regions from SNP 105694 to 106294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:17,251 DEBUG Processing 270/561 atomic regions from SNP 80969 to 81569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:17,313 DEBUG Processing 368/681 atomic regions from SNP 110210 to 110810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:17,321 DEBUG Processing 671/680 atomic regions from SNP 201088 to 201688 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,344 DEBUG Processing 272/599 atomic regions from SNP 81502 to 82102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:17,375 DEBUG Processing 288/513 atomic regions from SNP 86256 to 86856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:17,448 DEBUG Processing 271/561 atomic regions from SNP 81269 to 81869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:17,458 DEBUG Processing 354/643 atomic regions from SNP 105994 to 106594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:17,565 DEBUG Processing 672/680 atomic regions from SNP 201388 to 201988 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,570 DEBUG Processing 369/681 atomic regions from SNP 110510 to 111110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:17,574 DEBUG Processing 289/513 atomic regions from SNP 86556 to 87156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:17,578 DEBUG Processing 273/599 atomic regions from SNP 81802 to 82402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:17,651 DEBUG Processing 272/561 atomic regions from SNP 81569 to 82169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:17,689 DEBUG Processing 355/643 atomic regions from SNP 106294 to 106894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:17,782 DEBUG Processing 290/513 atomic regions from SNP 86856 to 87456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:17,808 DEBUG Processing 370/681 atomic regions from SNP 110810 to 111410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:17,809 DEBUG Processing 274/599 atomic regions from SNP 82102 to 82702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:17,815 DEBUG Processing 673/680 atomic regions from SNP 201688 to 202288 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,857 DEBUG Processing 273/561 atomic regions from SNP 81869 to 82469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:17,927 DEBUG Processing 356/643 atomic regions from SNP 106594 to 107194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:17,984 DEBUG Processing 291/513 atomic regions from SNP 87156 to 87756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:18,027 DEBUG Processing 371/681 atomic regions from SNP 111110 to 111710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:18,028 DEBUG Processing 275/599 atomic regions from SNP 82402 to 83002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:18,051 DEBUG Processing 674/680 atomic regions from SNP 201988 to 202588 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,056 DEBUG Processing 274/561 atomic regions from SNP 82169 to 82769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:18,151 DEBUG Processing 357/643 atomic regions from SNP 106894 to 107494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:18,188 DEBUG Processing 292/513 atomic regions from SNP 87456 to 88056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:18,254 DEBUG Processing 276/599 atomic regions from SNP 82702 to 83302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:18,262 DEBUG Processing 275/561 atomic regions from SNP 82469 to 83069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:18,288 DEBUG Processing 372/681 atomic regions from SNP 111410 to 112010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:18,289 DEBUG Processing 675/680 atomic regions from SNP 202288 to 202888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,372 DEBUG Processing 358/643 atomic regions from SNP 107194 to 107794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:18,378 DEBUG Processing 293/513 atomic regions from SNP 87756 to 88356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:18,466 DEBUG Processing 277/599 atomic regions from SNP 83002 to 83602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:18,473 DEBUG Processing 276/561 atomic regions from SNP 82769 to 83369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:18,519 DEBUG Processing 676/680 atomic regions from SNP 202588 to 203188 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,537 DEBUG Processing 373/681 atomic regions from SNP 111710 to 112310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:18,565 DEBUG Processing 294/513 atomic regions from SNP 88056 to 88656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:18,585 DEBUG Processing 359/643 atomic regions from SNP 107494 to 108094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:18,666 DEBUG Processing 278/599 atomic regions from SNP 83302 to 83902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:18,667 DEBUG Processing 277/561 atomic regions from SNP 83069 to 83669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:18,740 DEBUG Processing 677/680 atomic regions from SNP 202888 to 203488 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,771 DEBUG Processing 295/513 atomic regions from SNP 88356 to 88956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:18,788 DEBUG Processing 374/681 atomic regions from SNP 112010 to 112610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:18,816 DEBUG Processing 360/643 atomic regions from SNP 107794 to 108394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:18,854 DEBUG Processing 278/561 atomic regions from SNP 83369 to 83969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:18,869 DEBUG Processing 279/599 atomic regions from SNP 83602 to 84202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:18,958 DEBUG Processing 678/680 atomic regions from SNP 203188 to 203788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,970 DEBUG Processing 296/513 atomic regions from SNP 88656 to 89256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:19,015 DEBUG Processing 375/681 atomic regions from SNP 112310 to 112910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:19,044 DEBUG Processing 361/643 atomic regions from SNP 108094 to 108694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:19,061 DEBUG Processing 279/561 atomic regions from SNP 83669 to 84269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:19,084 DEBUG Processing 280/599 atomic regions from SNP 83902 to 84502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:19,155 DEBUG Processing 297/513 atomic regions from SNP 88956 to 89556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:19,172 DEBUG Processing 679/680 atomic regions from SNP 203488 to 204088 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:19,238 DEBUG Processing 376/681 atomic regions from SNP 112610 to 113210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:19,266 DEBUG Processing 362/643 atomic regions from SNP 108394 to 108994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:19,272 DEBUG Processing 280/561 atomic regions from SNP 83969 to 84569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:19,302 DEBUG Processing 281/599 atomic regions from SNP 84202 to 84802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:19,346 DEBUG Processing 298/513 atomic regions from SNP 89256 to 89856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:19,388 DEBUG Processing 680/680 atomic regions from SNP 203788 to 204388 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:19,454 DEBUG Processing 377/681 atomic regions from SNP 112910 to 113510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:19,476 DEBUG Processing 281/561 atomic regions from SNP 84269 to 84869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:19,482 DEBUG Processing 363/643 atomic regions from SNP 108694 to 109294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:19,518 DEBUG Processing 282/599 atomic regions from SNP 84502 to 85102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:19,527 DEBUG Unique SNPs positions in subchromosome 1: 204389 2025-01-31 09:48:19,549 DEBUG Processing 299/513 atomic regions from SNP 89556 to 90156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:19,674 DEBUG Processing 378/681 atomic regions from SNP 113210 to 113810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:19,677 DEBUG Processing 282/561 atomic regions from SNP 84569 to 85169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:19,701 DEBUG Processing 364/643 atomic regions from SNP 108994 to 109594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:19,733 DEBUG Processing 283/599 atomic regions from SNP 84802 to 85402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:19,743 DEBUG Processing 300/513 atomic regions from SNP 89856 to 90456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:19,884 DEBUG Processing 283/561 atomic regions from SNP 84869 to 85469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:19,900 DEBUG Processing 379/681 atomic regions from SNP 113510 to 114110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:19,922 DEBUG Processing 365/643 atomic regions from SNP 109294 to 109894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:19,942 DEBUG Processing 301/513 atomic regions from SNP 90156 to 90756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:19,949 DEBUG Processing 284/599 atomic regions from SNP 85102 to 85702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:20,076 DEBUG Processing 284/561 atomic regions from SNP 85169 to 85769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:20,116 DEBUG Processing 380/681 atomic regions from SNP 113810 to 114410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:20,137 DEBUG Processing 302/513 atomic regions from SNP 90456 to 91056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:20,140 DEBUG Processing 366/643 atomic regions from SNP 109594 to 110194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:20,165 DEBUG Processing 285/599 atomic regions from SNP 85402 to 86002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:20,275 DEBUG Processing 285/561 atomic regions from SNP 85469 to 86069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:20,328 DEBUG Processing 303/513 atomic regions from SNP 90756 to 91356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:20,332 DEBUG Processing 381/681 atomic regions from SNP 114110 to 114710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:20,358 DEBUG Processing 367/643 atomic regions from SNP 109894 to 110494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:20,381 DEBUG Processing 286/599 atomic regions from SNP 85702 to 86302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:20,487 DEBUG Processing 286/561 atomic regions from SNP 85769 to 86369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:20,535 DEBUG Processing 304/513 atomic regions from SNP 91056 to 91656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:20,562 DEBUG Processing 382/681 atomic regions from SNP 114410 to 115010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:20,581 DEBUG Processing 368/643 atomic regions from SNP 110194 to 110794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:20,598 DEBUG Processing 287/599 atomic regions from SNP 86002 to 86602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:20,688 DEBUG Processing 287/561 atomic regions from SNP 86069 to 86669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:20,739 DEBUG Processing 305/513 atomic regions from SNP 91356 to 91956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:20,767 DEBUG Subchromosome time: 188.21095013606828, subchromosome SNPs: 204389 2025-01-31 09:48:20,768 DEBUG Estimated BADs: [0.33, 1.00, 0.50, 5.97, 0.50, 1.00, 5.97, 1.00, 1.99, 1.00, 2.99, 1.00, 1.99] SNP counts: [14261, 2988, 7932, 2697, 30104, 6150, 568, 22900, 17952, 66335, 7728, 15680, 9094] SNP IDs counts: [14261, 2988, 7932, 2697, 30104, 6150, 568, 22900, 17952, 66335, 7728, 15680, 9094] Critical gap: 617207bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.29Mbp, 15.03Mbp, 20.63Mbp, 22.05Mbp, 40.76Mbp, 44.07Mbp, 44.38Mbp, 57.07Mbp, 66.59Mbp, 106.16Mbp, 110.53Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:48:20,768 DEBUG chr9 time: 188.21151829999872 s 2025-01-31 09:48:20,793 DEBUG Processing 383/681 atomic regions from SNP 114710 to 115310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:20,798 DEBUG Processing 369/643 atomic regions from SNP 110494 to 111094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:20,815 DEBUG Processing 288/599 atomic regions from SNP 86302 to 86902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:20,890 DEBUG Processing 288/561 atomic regions from SNP 86369 to 86969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:20,891 DEBUG chr9: Fitting background model for 13 segments 2025-01-31 09:48:20,937 DEBUG Processing 306/513 atomic regions from SNP 91656 to 92256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:21,023 DEBUG Processing 370/643 atomic regions from SNP 110794 to 111394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:21,025 DEBUG Processing 384/681 atomic regions from SNP 115010 to 115610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:21,035 DEBUG Processing 289/599 atomic regions from SNP 86602 to 87202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:21,101 DEBUG Processing 289/561 atomic regions from SNP 86669 to 87269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:21,136 DEBUG Processing 307/513 atomic regions from SNP 91956 to 92556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:21,242 DEBUG Processing 371/643 atomic regions from SNP 111094 to 111694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:21,249 DEBUG Processing 385/681 atomic regions from SNP 115310 to 115910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:21,250 DEBUG Processing 290/599 atomic regions from SNP 86902 to 87502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:21,311 DEBUG Processing 290/561 atomic regions from SNP 86969 to 87569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:21,337 DEBUG Processing 308/513 atomic regions from SNP 92256 to 92856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:21,461 DEBUG Processing 372/643 atomic regions from SNP 111394 to 111994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:21,464 DEBUG Processing 291/599 atomic regions from SNP 87202 to 87802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:21,471 DEBUG Processing 386/681 atomic regions from SNP 115610 to 116210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:21,519 DEBUG Processing 291/561 atomic regions from SNP 87269 to 87869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:21,538 DEBUG Processing 309/513 atomic regions from SNP 92556 to 93156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:21,683 DEBUG Processing 292/599 atomic regions from SNP 87502 to 88102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:21,684 DEBUG Processing 373/643 atomic regions from SNP 111694 to 112294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:21,689 DEBUG Processing 387/681 atomic regions from SNP 115910 to 116510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:21,724 DEBUG Processing 292/561 atomic regions from SNP 87569 to 88169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:21,736 DEBUG Processing 310/513 atomic regions from SNP 92856 to 93456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:21,906 DEBUG Processing 293/599 atomic regions from SNP 87802 to 88402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:21,911 DEBUG Processing 388/681 atomic regions from SNP 116210 to 116810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:21,911 DEBUG Processing 374/643 atomic regions from SNP 111994 to 112594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:21,924 DEBUG Processing 293/561 atomic regions from SNP 87869 to 88469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:21,931 DEBUG Processing 311/513 atomic regions from SNP 93156 to 93756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:22,126 DEBUG Processing 294/599 atomic regions from SNP 88102 to 88702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:22,129 DEBUG Processing 312/513 atomic regions from SNP 93456 to 94056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:22,130 DEBUG Processing 294/561 atomic regions from SNP 88169 to 88769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:22,133 DEBUG Processing 375/643 atomic regions from SNP 112294 to 112894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:22,135 DEBUG Processing 389/681 atomic regions from SNP 116510 to 117110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:22,329 DEBUG Processing 313/513 atomic regions from SNP 93756 to 94356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:22,336 DEBUG Processing 295/561 atomic regions from SNP 88469 to 89069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:22,352 DEBUG Processing 295/599 atomic regions from SNP 88402 to 89002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:22,359 DEBUG Processing 390/681 atomic regions from SNP 116810 to 117410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:22,363 DEBUG Processing 376/643 atomic regions from SNP 112594 to 113194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:22,519 DEBUG Processing 314/513 atomic regions from SNP 94056 to 94656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:22,535 DEBUG Processing 296/561 atomic regions from SNP 88769 to 89369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:22,569 DEBUG Processing 296/599 atomic regions from SNP 88702 to 89302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:22,579 DEBUG Processing 391/681 atomic regions from SNP 117110 to 117710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:22,591 DEBUG Processing 377/643 atomic regions from SNP 112894 to 113494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:22,714 DEBUG Processing 315/513 atomic regions from SNP 94356 to 94956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:22,735 DEBUG Processing 297/561 atomic regions from SNP 89069 to 89669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:22,784 DEBUG Processing 297/599 atomic regions from SNP 89002 to 89602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:22,798 DEBUG Processing 392/681 atomic regions from SNP 117410 to 118010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:22,816 DEBUG Processing 378/643 atomic regions from SNP 113194 to 113794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:22,911 DEBUG Processing 316/513 atomic regions from SNP 94656 to 95256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:22,941 DEBUG Processing 298/561 atomic regions from SNP 89369 to 89969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:23,002 DEBUG Processing 298/599 atomic regions from SNP 89302 to 89902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:23,018 DEBUG Processing 393/681 atomic regions from SNP 117710 to 118310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:23,044 DEBUG Processing 379/643 atomic regions from SNP 113494 to 114094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:23,106 DEBUG Processing 317/513 atomic regions from SNP 94956 to 95556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:23,144 DEBUG Processing 299/561 atomic regions from SNP 89669 to 90269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:23,224 DEBUG Processing 299/599 atomic regions from SNP 89602 to 90202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:23,241 DEBUG Processing 394/681 atomic regions from SNP 118010 to 118610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:23,268 DEBUG Processing 380/643 atomic regions from SNP 113794 to 114394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:23,306 DEBUG Processing 318/513 atomic regions from SNP 95256 to 95856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:23,349 DEBUG Processing 300/561 atomic regions from SNP 89969 to 90569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:23,446 DEBUG Processing 300/599 atomic regions from SNP 89902 to 90502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:23,458 DEBUG Processing 395/681 atomic regions from SNP 118310 to 118910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:23,493 DEBUG Processing 381/643 atomic regions from SNP 114094 to 114694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:23,504 DEBUG Processing 319/513 atomic regions from SNP 95556 to 96156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:23,555 DEBUG Processing 301/561 atomic regions from SNP 90269 to 90869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:23,662 DEBUG Processing 301/599 atomic regions from SNP 90202 to 90802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:23,685 DEBUG Processing 396/681 atomic regions from SNP 118610 to 119210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:23,697 DEBUG Processing 320/513 atomic regions from SNP 95856 to 96456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:23,717 DEBUG Processing 382/643 atomic regions from SNP 114394 to 114994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:23,754 DEBUG Processing 302/561 atomic regions from SNP 90569 to 91169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:23,886 DEBUG Processing 302/599 atomic regions from SNP 90502 to 91102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:23,901 DEBUG Processing 321/513 atomic regions from SNP 96156 to 96756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:23,942 DEBUG Processing 397/681 atomic regions from SNP 118910 to 119510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:23,955 DEBUG Processing 303/561 atomic regions from SNP 90869 to 91469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:23,956 DEBUG Processing 383/643 atomic regions from SNP 114694 to 115294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:24,102 DEBUG Processing 322/513 atomic regions from SNP 96456 to 97056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:24,106 DEBUG Processing 303/599 atomic regions from SNP 90802 to 91402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:24,162 DEBUG Processing 304/561 atomic regions from SNP 91169 to 91769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:24,170 DEBUG Processing 398/681 atomic regions from SNP 119210 to 119810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:24,197 DEBUG Processing 384/643 atomic regions from SNP 114994 to 115594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:24,289 DEBUG Processing 323/513 atomic regions from SNP 96756 to 97356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:24,321 DEBUG Processing 304/599 atomic regions from SNP 91102 to 91702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:24,361 DEBUG Processing 305/561 atomic regions from SNP 91469 to 92069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:24,390 DEBUG Processing 399/681 atomic regions from SNP 119510 to 120110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:24,428 DEBUG Processing 385/643 atomic regions from SNP 115294 to 115894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:24,480 DEBUG Processing 324/513 atomic regions from SNP 97056 to 97656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:24,534 DEBUG Processing 305/599 atomic regions from SNP 91402 to 92002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:24,563 DEBUG Processing 306/561 atomic regions from SNP 91769 to 92369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:24,613 DEBUG Processing 400/681 atomic regions from SNP 119810 to 120410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:24,651 DEBUG Processing 386/643 atomic regions from SNP 115594 to 116194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:24,666 DEBUG Processing 325/513 atomic regions from SNP 97356 to 97956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:24,754 DEBUG Processing 306/599 atomic regions from SNP 91702 to 92302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:24,763 DEBUG Processing 307/561 atomic regions from SNP 92069 to 92669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:24,858 DEBUG Processing 401/681 atomic regions from SNP 120110 to 120710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:24,866 DEBUG Processing 326/513 atomic regions from SNP 97656 to 98256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:24,890 DEBUG Processing 387/643 atomic regions from SNP 115894 to 116494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:24,961 DEBUG Processing 308/561 atomic regions from SNP 92369 to 92969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:24,972 DEBUG Processing 307/599 atomic regions from SNP 92002 to 92602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:25,070 DEBUG Processing 327/513 atomic regions from SNP 97956 to 98556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:25,096 DEBUG Processing 402/681 atomic regions from SNP 120410 to 121010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:25,127 DEBUG Processing 388/643 atomic regions from SNP 116194 to 116794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:25,162 DEBUG Processing 309/561 atomic regions from SNP 92669 to 93269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:25,188 DEBUG Processing 308/599 atomic regions from SNP 92302 to 92902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:25,257 DEBUG Processing 328/513 atomic regions from SNP 98256 to 98856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:25,319 DEBUG Processing 403/681 atomic regions from SNP 120710 to 121310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:25,354 DEBUG Processing 389/643 atomic regions from SNP 116494 to 117094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:25,369 DEBUG Processing 310/561 atomic regions from SNP 92969 to 93569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:25,410 DEBUG Processing 309/599 atomic regions from SNP 92602 to 93202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:25,448 DEBUG Processing 329/513 atomic regions from SNP 98556 to 99156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:25,536 DEBUG Processing 404/681 atomic regions from SNP 121010 to 121610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:25,574 DEBUG Processing 311/561 atomic regions from SNP 93269 to 93869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:25,585 DEBUG Processing 390/643 atomic regions from SNP 116794 to 117394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:25,638 DEBUG Processing 310/599 atomic regions from SNP 92902 to 93502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:25,646 DEBUG Processing 330/513 atomic regions from SNP 98856 to 99456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:25,757 DEBUG Processing 405/681 atomic regions from SNP 121310 to 121910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:25,778 DEBUG Processing 312/561 atomic regions from SNP 93569 to 94169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:25,811 DEBUG Processing 391/643 atomic regions from SNP 117094 to 117694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:25,843 DEBUG Processing 331/513 atomic regions from SNP 99156 to 99756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:25,859 DEBUG Processing 311/599 atomic regions from SNP 93202 to 93802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:25,973 DEBUG Processing 406/681 atomic regions from SNP 121610 to 122210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:25,977 DEBUG Processing 313/561 atomic regions from SNP 93869 to 94469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:26,035 DEBUG Processing 392/643 atomic regions from SNP 117394 to 117994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:26,040 DEBUG Processing 332/513 atomic regions from SNP 99456 to 100056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:26,081 DEBUG Processing 312/599 atomic regions from SNP 93502 to 94102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:26,178 DEBUG Processing 314/561 atomic regions from SNP 94169 to 94769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:26,193 DEBUG Processing 407/681 atomic regions from SNP 121910 to 122510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:26,234 DEBUG Processing 333/513 atomic regions from SNP 99756 to 100356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:26,253 DEBUG Processing 393/643 atomic regions from SNP 117694 to 118294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:26,297 DEBUG Processing 313/599 atomic regions from SNP 93802 to 94402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:26,379 DEBUG Processing 315/561 atomic regions from SNP 94469 to 95069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:26,416 DEBUG Processing 408/681 atomic regions from SNP 122210 to 122810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:26,431 DEBUG Processing 334/513 atomic regions from SNP 100056 to 100656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:26,477 DEBUG Processing 394/643 atomic regions from SNP 117994 to 118594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:26,516 DEBUG Processing 314/599 atomic regions from SNP 94102 to 94702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:26,574 DEBUG Processing 316/561 atomic regions from SNP 94769 to 95369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:26,626 DEBUG Processing 335/513 atomic regions from SNP 100356 to 100956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:26,634 DEBUG Processing 409/681 atomic regions from SNP 122510 to 123110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:26,704 DEBUG Processing 395/643 atomic regions from SNP 118294 to 118894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:26,738 DEBUG Processing 315/599 atomic regions from SNP 94402 to 95002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:26,775 DEBUG Processing 317/561 atomic regions from SNP 95069 to 95669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:26,815 DEBUG Processing 336/513 atomic regions from SNP 100656 to 101256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:26,847 DEBUG Processing 410/681 atomic regions from SNP 122810 to 123410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:26,931 DEBUG Processing 396/643 atomic regions from SNP 118594 to 119194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:26,961 DEBUG Processing 316/599 atomic regions from SNP 94702 to 95302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:26,974 DEBUG Processing 318/561 atomic regions from SNP 95369 to 95969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:27,009 DEBUG Processing 337/513 atomic regions from SNP 100956 to 101556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:27,064 DEBUG Processing 411/681 atomic regions from SNP 123110 to 123710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:27,156 DEBUG Processing 397/643 atomic regions from SNP 118894 to 119494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:27,173 DEBUG Processing 319/561 atomic regions from SNP 95669 to 96269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:27,186 DEBUG Processing 317/599 atomic regions from SNP 95002 to 95602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:27,203 DEBUG Processing 338/513 atomic regions from SNP 101256 to 101856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:27,278 DEBUG Processing 412/681 atomic regions from SNP 123410 to 124010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:27,381 DEBUG Processing 320/561 atomic regions from SNP 95969 to 96569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:27,383 DEBUG Processing 398/643 atomic regions from SNP 119194 to 119794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:27,404 DEBUG Processing 339/513 atomic regions from SNP 101556 to 102156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:27,427 DEBUG Processing 318/599 atomic regions from SNP 95302 to 95902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:27,510 DEBUG Processing 413/681 atomic regions from SNP 123710 to 124310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:27,583 DEBUG Processing 321/561 atomic regions from SNP 96269 to 96869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:27,602 DEBUG Processing 340/513 atomic regions from SNP 101856 to 102456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:27,613 DEBUG Processing 399/643 atomic regions from SNP 119494 to 120094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:27,669 DEBUG Processing 319/599 atomic regions from SNP 95602 to 96202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:27,746 DEBUG Processing 414/681 atomic regions from SNP 124010 to 124610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:27,784 DEBUG Processing 322/561 atomic regions from SNP 96569 to 97169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:27,795 DEBUG Processing 341/513 atomic regions from SNP 102156 to 102756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:27,841 DEBUG Processing 400/643 atomic regions from SNP 119794 to 120394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:27,892 DEBUG Processing 320/599 atomic regions from SNP 95902 to 96502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:27,975 DEBUG Processing 415/681 atomic regions from SNP 124310 to 124910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:27,994 DEBUG Processing 323/561 atomic regions from SNP 96869 to 97469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:27,997 DEBUG Processing 342/513 atomic regions from SNP 102456 to 103056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:28,071 DEBUG Processing 401/643 atomic regions from SNP 120094 to 120694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:28,115 DEBUG Processing 321/599 atomic regions from SNP 96202 to 96802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:28,210 DEBUG Processing 343/513 atomic regions from SNP 102756 to 103356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:28,211 DEBUG Processing 324/561 atomic regions from SNP 97169 to 97769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:28,215 DEBUG Processing 416/681 atomic regions from SNP 124610 to 125210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:28,300 DEBUG Processing 402/643 atomic regions from SNP 120394 to 120994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:28,339 DEBUG Processing 322/599 atomic regions from SNP 96502 to 97102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:28,417 DEBUG Processing 344/513 atomic regions from SNP 103056 to 103656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:28,424 DEBUG Processing 325/561 atomic regions from SNP 97469 to 98069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:28,458 DEBUG Processing 417/681 atomic regions from SNP 124910 to 125510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:28,530 DEBUG Processing 403/643 atomic regions from SNP 120694 to 121294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:28,562 DEBUG Processing 323/599 atomic regions from SNP 96802 to 97402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:28,613 DEBUG Processing 345/513 atomic regions from SNP 103356 to 103956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:28,626 DEBUG Processing 326/561 atomic regions from SNP 97769 to 98369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:28,712 DEBUG Processing 418/681 atomic regions from SNP 125210 to 125810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:28,761 DEBUG Processing 404/643 atomic regions from SNP 120994 to 121594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:28,793 DEBUG Processing 324/599 atomic regions from SNP 97102 to 97702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:28,810 DEBUG Processing 346/513 atomic regions from SNP 103656 to 104256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:28,828 DEBUG Processing 327/561 atomic regions from SNP 98069 to 98669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:28,934 DEBUG Processing 419/681 atomic regions from SNP 125510 to 126110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:28,990 DEBUG Processing 405/643 atomic regions from SNP 121294 to 121894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:29,012 DEBUG Processing 347/513 atomic regions from SNP 103956 to 104556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:29,025 DEBUG Processing 325/599 atomic regions from SNP 97402 to 98002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:29,036 DEBUG Processing 328/561 atomic regions from SNP 98369 to 98969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:29,162 DEBUG Processing 420/681 atomic regions from SNP 125810 to 126410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:29,216 DEBUG Processing 406/643 atomic regions from SNP 121594 to 122194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:29,218 DEBUG Processing 348/513 atomic regions from SNP 104256 to 104856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:29,244 DEBUG Processing 329/561 atomic regions from SNP 98669 to 99269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:29,247 DEBUG Processing 326/599 atomic regions from SNP 97702 to 98302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:29,383 DEBUG Processing 421/681 atomic regions from SNP 126110 to 126710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:29,429 DEBUG Processing 349/513 atomic regions from SNP 104556 to 105156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:29,450 DEBUG Processing 407/643 atomic regions from SNP 121894 to 122494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:29,460 DEBUG Processing 330/561 atomic regions from SNP 98969 to 99569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:29,479 DEBUG Processing 327/599 atomic regions from SNP 98002 to 98602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:29,600 DEBUG Processing 422/681 atomic regions from SNP 126410 to 127010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:29,631 DEBUG Processing 350/513 atomic regions from SNP 104856 to 105456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:29,675 DEBUG Processing 331/561 atomic regions from SNP 99269 to 99869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:29,690 DEBUG Processing 408/643 atomic regions from SNP 122194 to 122794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:29,712 DEBUG Processing 328/599 atomic regions from SNP 98302 to 98902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:29,824 DEBUG Processing 423/681 atomic regions from SNP 126710 to 127310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:29,828 DEBUG Processing 351/513 atomic regions from SNP 105156 to 105756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:29,880 DEBUG Processing 332/561 atomic regions from SNP 99569 to 100169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:29,929 DEBUG Processing 409/643 atomic regions from SNP 122494 to 123094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:29,966 DEBUG Processing 329/599 atomic regions from SNP 98602 to 99202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:30,036 DEBUG Processing 352/513 atomic regions from SNP 105456 to 106056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:30,059 DEBUG Processing 424/681 atomic regions from SNP 127010 to 127610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:30,091 DEBUG Processing 333/561 atomic regions from SNP 99869 to 100469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:30,193 DEBUG Processing 410/643 atomic regions from SNP 122794 to 123394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:30,218 DEBUG Processing 330/599 atomic regions from SNP 98902 to 99502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:30,240 DEBUG Processing 353/513 atomic regions from SNP 105756 to 106356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:30,288 DEBUG Processing 425/681 atomic regions from SNP 127310 to 127910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:30,302 DEBUG Processing 334/561 atomic regions from SNP 100169 to 100769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:30,420 DEBUG Processing 411/643 atomic regions from SNP 123094 to 123694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:30,441 DEBUG Processing 354/513 atomic regions from SNP 106056 to 106656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:30,441 DEBUG Processing 331/599 atomic regions from SNP 99202 to 99802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:30,505 DEBUG Processing 335/561 atomic regions from SNP 100469 to 101069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:30,511 DEBUG Processing 426/681 atomic regions from SNP 127610 to 128210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:30,641 DEBUG Processing 412/643 atomic regions from SNP 123394 to 123994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:30,644 DEBUG Processing 355/513 atomic regions from SNP 106356 to 106956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:30,662 DEBUG Processing 332/599 atomic regions from SNP 99502 to 100102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:30,710 DEBUG Processing 336/561 atomic regions from SNP 100769 to 101369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:30,737 DEBUG Processing 427/681 atomic regions from SNP 127910 to 128510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:30,844 DEBUG Processing 356/513 atomic regions from SNP 106656 to 107256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:30,866 DEBUG Processing 413/643 atomic regions from SNP 123694 to 124294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:30,885 DEBUG Processing 333/599 atomic regions from SNP 99802 to 100402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:30,920 DEBUG Processing 337/561 atomic regions from SNP 101069 to 101669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:30,977 DEBUG Processing 428/681 atomic regions from SNP 128210 to 128810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:31,040 DEBUG Processing 357/513 atomic regions from SNP 106956 to 107556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:31,090 DEBUG Processing 414/643 atomic regions from SNP 123994 to 124594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:31,105 DEBUG Processing 334/599 atomic regions from SNP 100102 to 100702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:31,125 DEBUG Processing 338/561 atomic regions from SNP 101369 to 101969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:31,197 DEBUG Processing 429/681 atomic regions from SNP 128510 to 129110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:31,235 DEBUG Processing 358/513 atomic regions from SNP 107256 to 107856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:31,309 DEBUG Processing 415/643 atomic regions from SNP 124294 to 124894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:31,322 DEBUG Processing 335/599 atomic regions from SNP 100402 to 101002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:31,330 DEBUG Processing 339/561 atomic regions from SNP 101669 to 102269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:31,423 DEBUG Processing 430/681 atomic regions from SNP 128810 to 129410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:31,434 DEBUG Processing 359/513 atomic regions from SNP 107556 to 108156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:31,530 DEBUG Processing 416/643 atomic regions from SNP 124594 to 125194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:31,540 DEBUG Processing 340/561 atomic regions from SNP 101969 to 102569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:31,541 DEBUG Processing 336/599 atomic regions from SNP 100702 to 101302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:31,639 DEBUG Processing 360/513 atomic regions from SNP 107856 to 108456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:31,655 DEBUG Processing 431/681 atomic regions from SNP 129110 to 129710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:31,745 DEBUG Processing 341/561 atomic regions from SNP 102269 to 102869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:31,753 DEBUG Processing 417/643 atomic regions from SNP 124894 to 125494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:31,759 DEBUG Processing 337/599 atomic regions from SNP 101002 to 101602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:31,851 DEBUG Processing 361/513 atomic regions from SNP 108156 to 108756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:31,895 DEBUG Processing 432/681 atomic regions from SNP 129410 to 130010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:31,960 DEBUG Processing 342/561 atomic regions from SNP 102569 to 103169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:31,986 DEBUG Processing 418/643 atomic regions from SNP 125194 to 125794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:31,988 DEBUG Processing 338/599 atomic regions from SNP 101302 to 101902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:32,051 DEBUG Processing 362/513 atomic regions from SNP 108456 to 109056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:32,126 DEBUG Processing 433/681 atomic regions from SNP 129710 to 130310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:32,174 DEBUG Processing 343/561 atomic regions from SNP 102869 to 103469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:32,219 DEBUG Processing 339/599 atomic regions from SNP 101602 to 102202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:32,220 DEBUG Processing 419/643 atomic regions from SNP 125494 to 126094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:32,252 DEBUG Processing 363/513 atomic regions from SNP 108756 to 109356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:32,352 DEBUG Processing 434/681 atomic regions from SNP 130010 to 130610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:32,382 DEBUG Processing 344/561 atomic regions from SNP 103169 to 103769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:32,447 DEBUG Processing 340/599 atomic regions from SNP 101902 to 102502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:32,453 DEBUG Processing 420/643 atomic regions from SNP 125794 to 126394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:32,459 DEBUG Processing 364/513 atomic regions from SNP 109056 to 109656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:32,577 DEBUG Processing 435/681 atomic regions from SNP 130310 to 130910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:32,587 DEBUG Processing 345/561 atomic regions from SNP 103469 to 104069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:32,663 DEBUG Processing 365/513 atomic regions from SNP 109356 to 109956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:32,677 DEBUG Processing 341/599 atomic regions from SNP 102202 to 102802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:32,684 DEBUG Processing 421/643 atomic regions from SNP 126094 to 126694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:32,791 DEBUG Processing 346/561 atomic regions from SNP 103769 to 104369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:32,800 DEBUG Processing 436/681 atomic regions from SNP 130610 to 131210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:32,861 DEBUG Processing 366/513 atomic regions from SNP 109656 to 110256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:32,906 DEBUG Processing 342/599 atomic regions from SNP 102502 to 103102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:32,918 DEBUG Processing 422/643 atomic regions from SNP 126394 to 126994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:33,003 DEBUG Processing 347/561 atomic regions from SNP 104069 to 104669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:33,033 DEBUG Processing 437/681 atomic regions from SNP 130910 to 131510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:33,063 DEBUG Processing 367/513 atomic regions from SNP 109956 to 110556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:33,125 DEBUG Processing 343/599 atomic regions from SNP 102802 to 103402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:33,190 DEBUG Processing 423/643 atomic regions from SNP 126694 to 127294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:33,221 DEBUG Processing 348/561 atomic regions from SNP 104369 to 104969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:33,267 DEBUG Processing 438/681 atomic regions from SNP 131210 to 131810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:33,268 DEBUG Processing 368/513 atomic regions from SNP 110256 to 110856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:33,339 DEBUG Processing 344/599 atomic regions from SNP 103102 to 103702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:33,440 DEBUG Processing 349/561 atomic regions from SNP 104669 to 105269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:33,469 DEBUG Processing 424/643 atomic regions from SNP 126994 to 127594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:33,480 DEBUG Processing 369/513 atomic regions from SNP 110556 to 111156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:33,503 DEBUG Processing 439/681 atomic regions from SNP 131510 to 132110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:33,556 DEBUG Processing 345/599 atomic regions from SNP 103402 to 104002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:33,653 DEBUG Processing 350/561 atomic regions from SNP 104969 to 105569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:33,693 DEBUG Processing 370/513 atomic regions from SNP 110856 to 111456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:33,699 DEBUG Processing 425/643 atomic regions from SNP 127294 to 127894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:33,741 DEBUG Processing 440/681 atomic regions from SNP 131810 to 132410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:33,777 DEBUG Processing 346/599 atomic regions from SNP 103702 to 104302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:33,855 DEBUG Processing 351/561 atomic regions from SNP 105269 to 105869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:33,898 DEBUG Processing 371/513 atomic regions from SNP 111156 to 111756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:33,918 DEBUG Processing 426/643 atomic regions from SNP 127594 to 128194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:33,981 DEBUG Processing 441/681 atomic regions from SNP 132110 to 132710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:33,999 DEBUG Processing 347/599 atomic regions from SNP 104002 to 104602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:34,061 DEBUG Processing 352/561 atomic regions from SNP 105569 to 106169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:34,097 DEBUG Processing 372/513 atomic regions from SNP 111456 to 112056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:34,132 DEBUG Processing 427/643 atomic regions from SNP 127894 to 128494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:34,214 DEBUG Processing 442/681 atomic regions from SNP 132410 to 133010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:34,220 DEBUG Processing 348/599 atomic regions from SNP 104302 to 104902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:34,272 DEBUG Processing 353/561 atomic regions from SNP 105869 to 106469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:34,300 DEBUG Processing 373/513 atomic regions from SNP 111756 to 112356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:34,366 DEBUG Processing 428/643 atomic regions from SNP 128194 to 128794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:34,432 DEBUG Processing 349/599 atomic regions from SNP 104602 to 105202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:34,443 DEBUG Processing 443/681 atomic regions from SNP 132710 to 133310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:34,484 DEBUG Processing 354/561 atomic regions from SNP 106169 to 106769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:34,505 DEBUG Processing 374/513 atomic regions from SNP 112056 to 112656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:34,592 DEBUG Processing 429/643 atomic regions from SNP 128494 to 129094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:34,642 DEBUG Processing 350/599 atomic regions from SNP 104902 to 105502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:34,667 DEBUG Processing 444/681 atomic regions from SNP 133010 to 133610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:34,693 DEBUG Processing 355/561 atomic regions from SNP 106469 to 107069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:34,708 DEBUG Processing 375/513 atomic regions from SNP 112356 to 112956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:34,817 DEBUG Processing 430/643 atomic regions from SNP 128794 to 129394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:34,858 DEBUG Processing 351/599 atomic regions from SNP 105202 to 105802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:34,895 DEBUG Processing 445/681 atomic regions from SNP 133310 to 133910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:34,902 DEBUG Processing 356/561 atomic regions from SNP 106769 to 107369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:34,907 DEBUG Processing 376/513 atomic regions from SNP 112656 to 113256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:35,042 DEBUG Processing 431/643 atomic regions from SNP 129094 to 129694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:35,073 DEBUG Processing 352/599 atomic regions from SNP 105502 to 106102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:35,110 DEBUG Processing 377/513 atomic regions from SNP 112956 to 113556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:35,111 DEBUG Processing 357/561 atomic regions from SNP 107069 to 107669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:35,124 DEBUG Processing 446/681 atomic regions from SNP 133610 to 134210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:35,270 DEBUG Processing 432/643 atomic regions from SNP 129394 to 129994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:35,296 DEBUG Processing 353/599 atomic regions from SNP 105802 to 106402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:35,320 DEBUG Processing 378/513 atomic regions from SNP 113256 to 113856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:35,326 DEBUG Processing 358/561 atomic regions from SNP 107369 to 107969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:35,358 DEBUG Processing 447/681 atomic regions from SNP 133910 to 134510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:35,494 DEBUG Processing 433/643 atomic regions from SNP 129694 to 130294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:35,519 DEBUG Processing 354/599 atomic regions from SNP 106102 to 106702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:35,522 DEBUG Processing 379/513 atomic regions from SNP 113556 to 114156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:35,537 DEBUG Processing 359/561 atomic regions from SNP 107669 to 108269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:35,595 DEBUG Processing 448/681 atomic regions from SNP 134210 to 134810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:35,717 DEBUG Processing 434/643 atomic regions from SNP 129994 to 130594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:35,720 DEBUG Processing 380/513 atomic regions from SNP 113856 to 114456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:35,739 DEBUG Processing 355/599 atomic regions from SNP 106402 to 107002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:35,742 DEBUG Processing 360/561 atomic regions from SNP 107969 to 108569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:35,826 DEBUG Processing 449/681 atomic regions from SNP 134510 to 135110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:35,921 DEBUG Processing 381/513 atomic regions from SNP 114156 to 114756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:35,942 DEBUG Processing 435/643 atomic regions from SNP 130294 to 130894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:35,946 DEBUG Processing 361/561 atomic regions from SNP 108269 to 108869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:35,957 DEBUG Processing 356/599 atomic regions from SNP 106702 to 107302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:36,051 DEBUG Processing 450/681 atomic regions from SNP 134810 to 135410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:36,128 DEBUG Processing 382/513 atomic regions from SNP 114456 to 115056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:36,158 DEBUG Processing 362/561 atomic regions from SNP 108569 to 109169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:36,174 DEBUG Processing 436/643 atomic regions from SNP 130594 to 131194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:36,184 DEBUG Processing 357/599 atomic regions from SNP 107002 to 107602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:36,275 DEBUG Processing 451/681 atomic regions from SNP 135110 to 135710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:36,337 DEBUG Processing 383/513 atomic regions from SNP 114756 to 115356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:36,374 DEBUG Processing 363/561 atomic regions from SNP 108869 to 109469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:36,412 DEBUG Processing 437/643 atomic regions from SNP 130894 to 131494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:36,414 DEBUG Processing 358/599 atomic regions from SNP 107302 to 107902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:36,500 DEBUG Processing 452/681 atomic regions from SNP 135410 to 136010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:36,542 DEBUG Processing 384/513 atomic regions from SNP 115056 to 115656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:36,583 DEBUG Processing 364/561 atomic regions from SNP 109169 to 109769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:36,633 DEBUG Processing 359/599 atomic regions from SNP 107602 to 108202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:36,637 DEBUG Processing 438/643 atomic regions from SNP 131194 to 131794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:36,730 DEBUG Processing 453/681 atomic regions from SNP 135710 to 136310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:36,745 DEBUG Processing 385/513 atomic regions from SNP 115356 to 115956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:36,791 DEBUG Processing 365/561 atomic regions from SNP 109469 to 110069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:36,850 DEBUG Processing 360/599 atomic regions from SNP 107902 to 108502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:36,867 DEBUG Processing 439/643 atomic regions from SNP 131494 to 132094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:36,950 DEBUG Processing 386/513 atomic regions from SNP 115656 to 116256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:36,959 DEBUG Processing 454/681 atomic regions from SNP 136010 to 136610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:37,002 DEBUG Processing 366/561 atomic regions from SNP 109769 to 110369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:37,087 DEBUG Processing 361/599 atomic regions from SNP 108202 to 108802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:37,092 DEBUG Processing 440/643 atomic regions from SNP 131794 to 132394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:37,153 DEBUG Processing 387/513 atomic regions from SNP 115956 to 116556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:37,188 DEBUG Processing 455/681 atomic regions from SNP 136310 to 136910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:37,213 DEBUG Processing 367/561 atomic regions from SNP 110069 to 110669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:37,325 DEBUG Processing 441/643 atomic regions from SNP 132094 to 132694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:37,334 DEBUG Processing 362/599 atomic regions from SNP 108502 to 109102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:37,360 DEBUG Processing 388/513 atomic regions from SNP 116256 to 116856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:37,421 DEBUG Processing 456/681 atomic regions from SNP 136610 to 137210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:37,424 DEBUG Processing 368/561 atomic regions from SNP 110369 to 110969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:37,556 DEBUG Processing 442/643 atomic regions from SNP 132394 to 132994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:37,566 DEBUG Processing 389/513 atomic regions from SNP 116556 to 117156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:37,579 DEBUG Processing 363/599 atomic regions from SNP 108802 to 109402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:37,642 DEBUG Processing 369/561 atomic regions from SNP 110669 to 111269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:37,658 DEBUG Processing 457/681 atomic regions from SNP 136910 to 137510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:37,769 DEBUG Processing 390/513 atomic regions from SNP 116856 to 117456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:37,787 DEBUG Processing 443/643 atomic regions from SNP 132694 to 133294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:37,819 DEBUG Processing 364/599 atomic regions from SNP 109102 to 109702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:37,860 DEBUG Processing 370/561 atomic regions from SNP 110969 to 111569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:37,910 DEBUG Processing 458/681 atomic regions from SNP 137210 to 137810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:37,973 DEBUG Processing 391/513 atomic regions from SNP 117156 to 117756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:38,015 DEBUG Processing 444/643 atomic regions from SNP 132994 to 133594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:38,040 DEBUG Processing 365/599 atomic regions from SNP 109402 to 110002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:38,076 DEBUG Processing 371/561 atomic regions from SNP 111269 to 111869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:38,166 DEBUG Processing 459/681 atomic regions from SNP 137510 to 138110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:38,183 DEBUG Processing 392/513 atomic regions from SNP 117456 to 118056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:38,244 DEBUG Processing 445/643 atomic regions from SNP 133294 to 133894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:38,262 DEBUG Processing 366/599 atomic regions from SNP 109702 to 110302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:38,282 DEBUG Processing 372/561 atomic regions from SNP 111569 to 112169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:38,391 DEBUG Processing 393/513 atomic regions from SNP 117756 to 118356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:38,400 DEBUG Processing 460/681 atomic regions from SNP 137810 to 138410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:38,475 DEBUG Processing 446/643 atomic regions from SNP 133594 to 134194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:38,489 DEBUG Processing 367/599 atomic regions from SNP 110002 to 110602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:38,497 DEBUG Processing 373/561 atomic regions from SNP 111869 to 112469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:38,601 DEBUG Processing 394/513 atomic regions from SNP 118056 to 118656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:38,634 DEBUG Processing 461/681 atomic regions from SNP 138110 to 138710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:38,705 DEBUG Processing 447/643 atomic regions from SNP 133894 to 134494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:38,711 DEBUG Processing 374/561 atomic regions from SNP 112169 to 112769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:38,715 DEBUG Processing 368/599 atomic regions from SNP 110302 to 110902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:38,808 DEBUG Processing 395/513 atomic regions from SNP 118356 to 118956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:38,868 DEBUG Processing 462/681 atomic regions from SNP 138410 to 139010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:38,923 DEBUG Processing 375/561 atomic regions from SNP 112469 to 113069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:38,938 DEBUG Processing 448/643 atomic regions from SNP 134194 to 134794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:38,942 DEBUG Processing 369/599 atomic regions from SNP 110602 to 111202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:39,018 DEBUG Processing 396/513 atomic regions from SNP 118656 to 119256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:39,103 DEBUG Processing 463/681 atomic regions from SNP 138710 to 139310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:39,166 DEBUG Processing 376/561 atomic regions from SNP 112769 to 113369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:39,174 DEBUG Processing 370/599 atomic regions from SNP 110902 to 111502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:39,176 DEBUG Processing 449/643 atomic regions from SNP 134494 to 135094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:39,222 DEBUG Processing 397/513 atomic regions from SNP 118956 to 119556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:39,340 DEBUG Processing 464/681 atomic regions from SNP 139010 to 139610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:39,402 DEBUG Processing 377/561 atomic regions from SNP 113069 to 113669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:39,410 DEBUG Processing 371/599 atomic regions from SNP 111202 to 111802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:39,415 DEBUG Processing 450/643 atomic regions from SNP 134794 to 135394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:39,429 DEBUG Processing 398/513 atomic regions from SNP 119256 to 119856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:39,574 DEBUG Processing 465/681 atomic regions from SNP 139310 to 139910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:39,620 DEBUG Processing 378/561 atomic regions from SNP 113369 to 113969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:39,634 DEBUG Processing 372/599 atomic regions from SNP 111502 to 112102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:39,639 DEBUG Processing 399/513 atomic regions from SNP 119556 to 120156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:39,643 DEBUG Processing 451/643 atomic regions from SNP 135094 to 135694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:39,807 DEBUG Processing 466/681 atomic regions from SNP 139610 to 140210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:39,842 DEBUG Processing 379/561 atomic regions from SNP 113669 to 114269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:39,855 DEBUG Processing 400/513 atomic regions from SNP 119856 to 120456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:39,857 DEBUG Processing 373/599 atomic regions from SNP 111802 to 112402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:39,868 DEBUG Processing 452/643 atomic regions from SNP 135394 to 135994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:40,042 DEBUG Processing 467/681 atomic regions from SNP 139910 to 140510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:40,064 DEBUG Processing 380/561 atomic regions from SNP 113969 to 114569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:40,070 DEBUG Processing 401/513 atomic regions from SNP 120156 to 120756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:40,073 DEBUG Processing 374/599 atomic regions from SNP 112102 to 112702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:40,088 DEBUG Processing 453/643 atomic regions from SNP 135694 to 136294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:40,277 DEBUG Processing 468/681 atomic regions from SNP 140210 to 140810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:40,283 DEBUG Processing 381/561 atomic regions from SNP 114269 to 114869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:40,285 DEBUG Processing 402/513 atomic regions from SNP 120456 to 121056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:40,296 DEBUG Processing 375/599 atomic regions from SNP 112402 to 113002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:40,316 DEBUG Processing 454/643 atomic regions from SNP 135994 to 136594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:40,501 DEBUG Processing 403/513 atomic regions from SNP 120756 to 121356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:40,506 DEBUG Processing 382/561 atomic regions from SNP 114569 to 115169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:40,520 DEBUG Processing 469/681 atomic regions from SNP 140510 to 141110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:40,531 DEBUG Processing 376/599 atomic regions from SNP 112702 to 113302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:40,550 DEBUG Processing 455/643 atomic regions from SNP 136294 to 136894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:40,718 DEBUG Processing 404/513 atomic regions from SNP 121056 to 121656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:40,730 DEBUG Processing 383/561 atomic regions from SNP 114869 to 115469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:40,761 DEBUG Processing 377/599 atomic regions from SNP 113002 to 113602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:40,765 DEBUG Processing 470/681 atomic regions from SNP 140810 to 141410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:40,782 DEBUG Processing 456/643 atomic regions from SNP 136594 to 137194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:40,932 DEBUG Processing 405/513 atomic regions from SNP 121356 to 121956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:40,951 DEBUG Processing 384/561 atomic regions from SNP 115169 to 115769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:40,990 DEBUG Processing 378/599 atomic regions from SNP 113302 to 113902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:41,005 DEBUG Processing 471/681 atomic regions from SNP 141110 to 141710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:41,016 DEBUG Processing 457/643 atomic regions from SNP 136894 to 137494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:41,149 DEBUG Processing 406/513 atomic regions from SNP 121656 to 122256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:41,174 DEBUG Processing 385/561 atomic regions from SNP 115469 to 116069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:41,218 DEBUG Processing 379/599 atomic regions from SNP 113602 to 114202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:41,250 DEBUG Processing 472/681 atomic regions from SNP 141410 to 142010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:41,252 DEBUG Processing 458/643 atomic regions from SNP 137194 to 137794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:41,363 DEBUG Processing 407/513 atomic regions from SNP 121956 to 122556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:41,396 DEBUG Processing 386/561 atomic regions from SNP 115769 to 116369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:41,436 DEBUG Processing 380/599 atomic regions from SNP 113902 to 114502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:41,481 DEBUG Processing 459/643 atomic regions from SNP 137494 to 138094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:41,489 DEBUG Processing 473/681 atomic regions from SNP 141710 to 142310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:41,572 DEBUG Processing 408/513 atomic regions from SNP 122256 to 122856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:41,611 DEBUG Processing 387/561 atomic regions from SNP 116069 to 116669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:41,649 DEBUG Processing 381/599 atomic regions from SNP 114202 to 114802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:41,709 DEBUG Processing 460/643 atomic regions from SNP 137794 to 138394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:41,725 DEBUG Processing 474/681 atomic regions from SNP 142010 to 142610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:41,778 DEBUG Processing 409/513 atomic regions from SNP 122556 to 123156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:41,822 DEBUG Processing 388/561 atomic regions from SNP 116369 to 116969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:41,857 DEBUG Processing 382/599 atomic regions from SNP 114502 to 115102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:41,934 DEBUG Processing 461/643 atomic regions from SNP 138094 to 138694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:41,965 DEBUG Processing 475/681 atomic regions from SNP 142310 to 142910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:41,989 DEBUG Processing 410/513 atomic regions from SNP 122856 to 123456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:42,031 DEBUG Processing 389/561 atomic regions from SNP 116669 to 117269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:42,087 DEBUG Processing 383/599 atomic regions from SNP 114802 to 115402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:42,154 DEBUG Processing 462/643 atomic regions from SNP 138394 to 138994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:42,206 DEBUG Processing 411/513 atomic regions from SNP 123156 to 123756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:42,216 DEBUG Processing 476/681 atomic regions from SNP 142610 to 143210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:42,249 DEBUG Processing 390/561 atomic regions from SNP 116969 to 117569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:42,320 DEBUG Processing 384/599 atomic regions from SNP 115102 to 115702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:42,368 DEBUG Processing 463/643 atomic regions from SNP 138694 to 139294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:42,414 DEBUG Processing 412/513 atomic regions from SNP 123456 to 124056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:42,451 DEBUG Processing 477/681 atomic regions from SNP 142910 to 143510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:42,463 DEBUG Processing 391/561 atomic regions from SNP 117269 to 117869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:42,537 DEBUG Processing 385/599 atomic regions from SNP 115402 to 116002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:42,580 DEBUG Processing 464/643 atomic regions from SNP 138994 to 139594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:42,616 DEBUG Processing 413/513 atomic regions from SNP 123756 to 124356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:42,675 DEBUG Processing 392/561 atomic regions from SNP 117569 to 118169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:42,682 DEBUG Processing 478/681 atomic regions from SNP 143210 to 143810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:42,747 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:48:42,764 DEBUG Processing 386/599 atomic regions from SNP 115702 to 116302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:42,802 DEBUG Processing 465/643 atomic regions from SNP 139294 to 139894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:42,820 DEBUG Processing 414/513 atomic regions from SNP 124056 to 124656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:42,908 DEBUG Processing 393/561 atomic regions from SNP 117869 to 118469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:42,920 DEBUG Processing 479/681 atomic regions from SNP 143510 to 144110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:42,999 DEBUG Processing 387/599 atomic regions from SNP 116002 to 116602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:43,027 DEBUG Processing 415/513 atomic regions from SNP 124356 to 124956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:43,035 DEBUG Processing 466/643 atomic regions from SNP 139594 to 140194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:43,136 DEBUG Processing 394/561 atomic regions from SNP 118169 to 118769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:43,153 DEBUG Processing 480/681 atomic regions from SNP 143810 to 144410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:43,224 DEBUG Processing 388/599 atomic regions from SNP 116302 to 116902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:43,233 DEBUG Processing 416/513 atomic regions from SNP 124656 to 125256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:43,270 DEBUG Processing 467/643 atomic regions from SNP 139894 to 140494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:43,373 DEBUG Processing 395/561 atomic regions from SNP 118469 to 119069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:43,389 DEBUG Processing 481/681 atomic regions from SNP 144110 to 144710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:43,439 DEBUG Processing 417/513 atomic regions from SNP 124956 to 125556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:43,450 DEBUG Processing 389/599 atomic regions from SNP 116602 to 117202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:43,499 DEBUG Processing 468/643 atomic regions from SNP 140194 to 140794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:43,622 DEBUG Processing 396/561 atomic regions from SNP 118769 to 119369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:43,622 DEBUG Processing 482/681 atomic regions from SNP 144410 to 145010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:43,649 DEBUG Processing 418/513 atomic regions from SNP 125256 to 125856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:43,672 DEBUG Processing 390/599 atomic regions from SNP 116902 to 117502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:43,731 DEBUG Processing 469/643 atomic regions from SNP 140494 to 141094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:43,855 DEBUG Processing 483/681 atomic regions from SNP 144710 to 145310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:43,856 DEBUG Processing 397/561 atomic regions from SNP 119069 to 119669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:43,857 DEBUG Processing 419/513 atomic regions from SNP 125556 to 126156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:43,889 DEBUG Processing 391/599 atomic regions from SNP 117202 to 117802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:43,966 DEBUG Processing 470/643 atomic regions from SNP 140794 to 141394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:44,080 DEBUG Processing 420/513 atomic regions from SNP 125856 to 126456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:44,109 DEBUG Processing 484/681 atomic regions from SNP 145010 to 145610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:44,119 DEBUG Processing 392/599 atomic regions from SNP 117502 to 118102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:44,127 DEBUG Processing 398/561 atomic regions from SNP 119369 to 119969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:44,242 DEBUG Processing 471/643 atomic regions from SNP 141094 to 141694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:44,301 DEBUG Processing 421/513 atomic regions from SNP 126156 to 126756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:44,342 DEBUG Processing 393/599 atomic regions from SNP 117802 to 118402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:44,350 DEBUG Processing 485/681 atomic regions from SNP 145310 to 145910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:44,375 DEBUG Processing 399/561 atomic regions from SNP 119669 to 120269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:44,452 DEBUG Processing 472/643 atomic regions from SNP 141394 to 141994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:44,512 DEBUG Processing 422/513 atomic regions from SNP 126456 to 127056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:44,564 DEBUG Processing 394/599 atomic regions from SNP 118102 to 118702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:44,588 DEBUG Processing 486/681 atomic regions from SNP 145610 to 146210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:44,605 DEBUG Processing 400/561 atomic regions from SNP 119969 to 120569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:44,669 DEBUG Processing 473/643 atomic regions from SNP 141694 to 142294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:44,717 DEBUG Processing 423/513 atomic regions from SNP 126756 to 127356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:44,779 DEBUG Processing 395/599 atomic regions from SNP 118402 to 119002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:44,821 DEBUG Processing 401/561 atomic regions from SNP 120269 to 120869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:44,823 DEBUG Processing 487/681 atomic regions from SNP 145910 to 146510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:44,888 DEBUG Processing 474/643 atomic regions from SNP 141994 to 142594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:44,920 DEBUG Processing 424/513 atomic regions from SNP 127056 to 127656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:44,984 DEBUG Processing 396/599 atomic regions from SNP 118702 to 119302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:45,033 DEBUG Processing 402/561 atomic regions from SNP 120569 to 121169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:45,053 DEBUG Processing 488/681 atomic regions from SNP 146210 to 146810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:45,107 DEBUG Processing 475/643 atomic regions from SNP 142294 to 142894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:45,124 DEBUG Processing 425/513 atomic regions from SNP 127356 to 127956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:45,199 DEBUG Processing 397/599 atomic regions from SNP 119002 to 119602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:45,244 DEBUG Processing 403/561 atomic regions from SNP 120869 to 121469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:45,282 DEBUG Processing 489/681 atomic regions from SNP 146510 to 147110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:45,329 DEBUG Processing 426/513 atomic regions from SNP 127656 to 128256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:45,329 DEBUG Processing 476/643 atomic regions from SNP 142594 to 143194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:45,414 DEBUG Processing 398/599 atomic regions from SNP 119302 to 119902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:45,458 DEBUG Processing 404/561 atomic regions from SNP 121169 to 121769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:45,517 DEBUG Processing 490/681 atomic regions from SNP 146810 to 147410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:45,534 DEBUG Processing 427/513 atomic regions from SNP 127956 to 128556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:45,551 DEBUG Processing 477/643 atomic regions from SNP 142894 to 143494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:45,633 DEBUG Processing 399/599 atomic regions from SNP 119602 to 120202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:45,685 DEBUG Processing 405/561 atomic regions from SNP 121469 to 122069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:45,740 DEBUG Processing 428/513 atomic regions from SNP 128256 to 128856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:45,750 DEBUG Processing 491/681 atomic regions from SNP 147110 to 147710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:45,768 DEBUG Processing 478/643 atomic regions from SNP 143194 to 143794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:45,850 DEBUG Processing 400/599 atomic regions from SNP 119902 to 120502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:45,909 DEBUG Processing 406/561 atomic regions from SNP 121769 to 122369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:45,954 DEBUG Processing 429/513 atomic regions from SNP 128556 to 129156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:45,986 DEBUG Processing 479/643 atomic regions from SNP 143494 to 144094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:45,989 DEBUG Processing 492/681 atomic regions from SNP 147410 to 148010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:46,061 DEBUG Processing 401/599 atomic regions from SNP 120202 to 120802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:46,121 DEBUG Processing 407/561 atomic regions from SNP 122069 to 122669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:46,168 DEBUG Processing 430/513 atomic regions from SNP 128856 to 129456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:46,212 DEBUG Processing 480/643 atomic regions from SNP 143794 to 144394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:46,228 DEBUG Processing 493/681 atomic regions from SNP 147710 to 148310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:46,269 DEBUG Processing 402/599 atomic regions from SNP 120502 to 121102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:46,337 DEBUG Processing 408/561 atomic regions from SNP 122369 to 122969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:46,376 DEBUG Processing 431/513 atomic regions from SNP 129156 to 129756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:46,445 DEBUG Processing 481/643 atomic regions from SNP 144094 to 144694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:46,464 DEBUG Processing 494/681 atomic regions from SNP 148010 to 148610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:46,502 DEBUG Processing 403/599 atomic regions from SNP 120802 to 121402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:46,551 DEBUG Processing 409/561 atomic regions from SNP 122669 to 123269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:46,575 DEBUG Processing 432/513 atomic regions from SNP 129456 to 130056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:46,668 DEBUG Processing 482/643 atomic regions from SNP 144394 to 144994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:46,699 DEBUG Processing 495/681 atomic regions from SNP 148310 to 148910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:46,740 DEBUG Processing 404/599 atomic regions from SNP 121102 to 121702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:46,763 DEBUG Processing 410/561 atomic regions from SNP 122969 to 123569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:46,778 DEBUG Processing 433/513 atomic regions from SNP 129756 to 130356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:46,889 DEBUG Processing 483/643 atomic regions from SNP 144694 to 145294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:46,932 DEBUG Processing 496/681 atomic regions from SNP 148610 to 149210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:46,960 DEBUG Processing 405/599 atomic regions from SNP 121402 to 122002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:46,984 DEBUG Processing 434/513 atomic regions from SNP 130056 to 130656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:46,987 DEBUG Processing 411/561 atomic regions from SNP 123269 to 123869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:47,114 DEBUG Processing 484/643 atomic regions from SNP 144994 to 145594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:47,173 DEBUG Processing 497/681 atomic regions from SNP 148910 to 149510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:47,185 DEBUG Processing 406/599 atomic regions from SNP 121702 to 122302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:47,197 DEBUG Processing 435/513 atomic regions from SNP 130356 to 130956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:47,232 DEBUG Processing 412/561 atomic regions from SNP 123569 to 124169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:47,326 DEBUG Processing 485/643 atomic regions from SNP 145294 to 145894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:47,405 DEBUG Processing 407/599 atomic regions from SNP 122002 to 122602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:47,410 DEBUG Processing 498/681 atomic regions from SNP 149210 to 149810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:47,410 DEBUG Processing 436/513 atomic regions from SNP 130656 to 131256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:47,463 DEBUG Processing 413/561 atomic regions from SNP 123869 to 124469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:47,543 DEBUG Processing 486/643 atomic regions from SNP 145594 to 146194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:47,617 DEBUG Processing 437/513 atomic regions from SNP 130956 to 131556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:47,639 DEBUG Processing 408/599 atomic regions from SNP 122302 to 122902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:47,643 DEBUG Processing 499/681 atomic regions from SNP 149510 to 150110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:47,703 DEBUG Processing 414/561 atomic regions from SNP 124169 to 124769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:47,758 DEBUG Processing 487/643 atomic regions from SNP 145894 to 146494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:47,823 DEBUG Processing 438/513 atomic regions from SNP 131256 to 131856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:47,867 DEBUG Processing 409/599 atomic regions from SNP 122602 to 123202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:47,877 DEBUG Processing 500/681 atomic regions from SNP 149810 to 150410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:47,939 DEBUG Processing 415/561 atomic regions from SNP 124469 to 125069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:47,972 DEBUG Processing 488/643 atomic regions from SNP 146194 to 146794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:48,031 DEBUG Processing 439/513 atomic regions from SNP 131556 to 132156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:48,090 DEBUG Processing 410/599 atomic regions from SNP 122902 to 123502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:48,115 DEBUG Processing 501/681 atomic regions from SNP 150110 to 150710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:48,179 DEBUG Processing 416/561 atomic regions from SNP 124769 to 125369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:48,199 DEBUG Processing 489/643 atomic regions from SNP 146494 to 147094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:48,239 DEBUG Processing 440/513 atomic regions from SNP 131856 to 132456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:48,302 DEBUG Processing 411/599 atomic regions from SNP 123202 to 123802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:48,347 DEBUG Processing 502/681 atomic regions from SNP 150410 to 151010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:48,413 DEBUG Processing 490/643 atomic regions from SNP 146794 to 147394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:48,413 DEBUG Processing 417/561 atomic regions from SNP 125069 to 125669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:48,444 DEBUG Processing 441/513 atomic regions from SNP 132156 to 132756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:48,507 DEBUG Processing 412/599 atomic regions from SNP 123502 to 124102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:48,576 DEBUG Processing 503/681 atomic regions from SNP 150710 to 151310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:48,626 DEBUG Processing 418/561 atomic regions from SNP 125369 to 125969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:48,629 DEBUG Processing 491/643 atomic regions from SNP 147094 to 147694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:48,647 DEBUG Processing 442/513 atomic regions from SNP 132456 to 133056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:48,706 DEBUG Processing 413/599 atomic regions from SNP 123802 to 124402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:48,804 DEBUG Processing 504/681 atomic regions from SNP 151010 to 151610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:48,848 DEBUG Processing 492/643 atomic regions from SNP 147394 to 147994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:48,857 DEBUG Processing 443/513 atomic regions from SNP 132756 to 133356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:48,862 DEBUG Processing 419/561 atomic regions from SNP 125669 to 126269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:48,914 DEBUG Processing 414/599 atomic regions from SNP 124102 to 124702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:49,036 DEBUG Processing 505/681 atomic regions from SNP 151310 to 151910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:49,070 DEBUG Processing 444/513 atomic regions from SNP 133056 to 133656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:49,070 DEBUG Processing 493/643 atomic regions from SNP 147694 to 148294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:49,109 DEBUG Processing 420/561 atomic regions from SNP 125969 to 126569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:49,124 DEBUG Processing 415/599 atomic regions from SNP 124402 to 125002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:49,261 DEBUG Processing 506/681 atomic regions from SNP 151610 to 152210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:49,277 DEBUG Processing 445/513 atomic regions from SNP 133356 to 133956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:49,289 DEBUG Processing 494/643 atomic regions from SNP 147994 to 148594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:49,329 DEBUG Processing 421/561 atomic regions from SNP 126269 to 126869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:49,339 DEBUG Processing 416/599 atomic regions from SNP 124702 to 125302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:49,479 DEBUG Processing 446/513 atomic regions from SNP 133656 to 134256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:49,487 DEBUG Processing 507/681 atomic regions from SNP 151910 to 152510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:49,501 DEBUG Processing 495/643 atomic regions from SNP 148294 to 148894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:49,539 DEBUG Processing 422/561 atomic regions from SNP 126569 to 127169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:49,549 DEBUG Processing 417/599 atomic regions from SNP 125002 to 125602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:49,686 DEBUG Processing 447/513 atomic regions from SNP 133956 to 134556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:49,712 DEBUG Processing 496/643 atomic regions from SNP 148594 to 149194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:49,721 DEBUG Processing 508/681 atomic regions from SNP 152210 to 152810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:49,756 DEBUG Processing 418/599 atomic regions from SNP 125302 to 125902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:49,757 DEBUG Processing 423/561 atomic regions from SNP 126869 to 127469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:49,887 DEBUG Processing 448/513 atomic regions from SNP 134256 to 134856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:49,921 DEBUG Processing 497/643 atomic regions from SNP 148894 to 149494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:49,954 DEBUG Processing 509/681 atomic regions from SNP 152510 to 153110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:49,960 DEBUG Processing 419/599 atomic regions from SNP 125602 to 126202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:49,971 DEBUG Processing 424/561 atomic regions from SNP 127169 to 127769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:50,086 DEBUG Processing 449/513 atomic regions from SNP 134556 to 135156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:50,129 DEBUG Processing 498/643 atomic regions from SNP 149194 to 149794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:50,163 DEBUG Processing 420/599 atomic regions from SNP 125902 to 126502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:50,184 DEBUG Processing 425/561 atomic regions from SNP 127469 to 128069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:50,187 DEBUG Processing 510/681 atomic regions from SNP 152810 to 153410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:50,303 DEBUG Processing 450/513 atomic regions from SNP 134856 to 135456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:50,341 DEBUG Processing 499/643 atomic regions from SNP 149494 to 150094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:50,371 DEBUG Processing 421/599 atomic regions from SNP 126202 to 126802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:50,400 DEBUG Processing 426/561 atomic regions from SNP 127769 to 128369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:50,424 DEBUG Processing 511/681 atomic regions from SNP 153110 to 153710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:50,509 DEBUG Processing 451/513 atomic regions from SNP 135156 to 135756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:50,558 DEBUG Processing 500/643 atomic regions from SNP 149794 to 150394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:50,583 DEBUG Processing 422/599 atomic regions from SNP 126502 to 127102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:50,615 DEBUG Processing 427/561 atomic regions from SNP 128069 to 128669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:50,658 DEBUG Processing 512/681 atomic regions from SNP 153410 to 154010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:50,718 DEBUG Processing 452/513 atomic regions from SNP 135456 to 136056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:50,774 DEBUG Processing 501/643 atomic regions from SNP 150094 to 150694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:50,795 DEBUG Processing 423/599 atomic regions from SNP 126802 to 127402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:50,845 DEBUG Processing 428/561 atomic regions from SNP 128369 to 128969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:50,906 DEBUG Processing 513/681 atomic regions from SNP 153710 to 154310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:50,928 DEBUG Processing 453/513 atomic regions from SNP 135756 to 136356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:50,995 DEBUG Processing 502/643 atomic regions from SNP 150394 to 150994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:51,013 DEBUG Processing 424/599 atomic regions from SNP 127102 to 127702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:51,068 DEBUG Processing 429/561 atomic regions from SNP 128669 to 129269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:51,139 DEBUG Processing 454/513 atomic regions from SNP 136056 to 136656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:51,142 DEBUG Processing 514/681 atomic regions from SNP 154010 to 154610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:51,218 DEBUG Processing 503/643 atomic regions from SNP 150694 to 151294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:51,256 DEBUG Processing 425/599 atomic regions from SNP 127402 to 128002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:51,318 DEBUG Processing 430/561 atomic regions from SNP 128969 to 129569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:51,356 DEBUG Processing 455/513 atomic regions from SNP 136356 to 136956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:51,384 DEBUG Processing 515/681 atomic regions from SNP 154310 to 154910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:51,438 DEBUG Processing 504/643 atomic regions from SNP 150994 to 151594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:51,475 DEBUG Processing 426/599 atomic regions from SNP 127702 to 128302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:51,549 DEBUG Processing 431/561 atomic regions from SNP 129269 to 129869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:51,563 DEBUG Processing 456/513 atomic regions from SNP 136656 to 137256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:51,617 DEBUG Processing 516/681 atomic regions from SNP 154610 to 155210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:51,650 DEBUG Processing 505/643 atomic regions from SNP 151294 to 151894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:51,699 DEBUG Processing 427/599 atomic regions from SNP 128002 to 128602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:51,767 DEBUG Processing 457/513 atomic regions from SNP 136956 to 137556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:51,784 DEBUG Processing 432/561 atomic regions from SNP 129569 to 130169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:51,848 DEBUG Processing 517/681 atomic regions from SNP 154910 to 155510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:51,862 DEBUG Processing 506/643 atomic regions from SNP 151594 to 152194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:51,904 DEBUG Processing 428/599 atomic regions from SNP 128302 to 128902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:51,978 DEBUG Processing 458/513 atomic regions from SNP 137256 to 137856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:52,031 DEBUG Processing 433/561 atomic regions from SNP 129869 to 130469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:52,083 DEBUG Processing 507/643 atomic regions from SNP 151894 to 152494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:52,085 DEBUG Processing 518/681 atomic regions from SNP 155210 to 155810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:52,114 DEBUG Processing 429/599 atomic regions from SNP 128602 to 129202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:52,186 DEBUG Processing 459/513 atomic regions from SNP 137556 to 138156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:52,264 DEBUG Processing 434/561 atomic regions from SNP 130169 to 130769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:52,308 DEBUG Processing 508/643 atomic regions from SNP 152194 to 152794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:52,325 DEBUG Processing 519/681 atomic regions from SNP 155510 to 156110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:52,335 DEBUG Processing 430/599 atomic regions from SNP 128902 to 129502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:52,401 DEBUG Processing 460/513 atomic regions from SNP 137856 to 138456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:52,481 DEBUG Processing 435/561 atomic regions from SNP 130469 to 131069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:52,535 DEBUG Processing 509/643 atomic regions from SNP 152494 to 153094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:52,556 DEBUG Processing 431/599 atomic regions from SNP 129202 to 129802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:52,567 DEBUG Processing 520/681 atomic regions from SNP 155810 to 156410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:52,612 DEBUG Processing 461/513 atomic regions from SNP 138156 to 138756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:52,700 DEBUG Processing 436/561 atomic regions from SNP 130769 to 131369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:52,766 DEBUG Processing 510/643 atomic regions from SNP 152794 to 153394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:52,785 DEBUG Processing 432/599 atomic regions from SNP 129502 to 130102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:52,806 DEBUG Processing 521/681 atomic regions from SNP 156110 to 156710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:52,827 DEBUG Processing 462/513 atomic regions from SNP 138456 to 139056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:52,925 DEBUG Processing 437/561 atomic regions from SNP 131069 to 131669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:52,969 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:48:52,971 DEBUG chr17: Signal quantile: 0.992. signal threshold: 8. Best RMSEA: 0.021 2025-01-31 09:48:53,013 DEBUG Processing 511/643 atomic regions from SNP 153094 to 153694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:53,046 DEBUG Processing 433/599 atomic regions from SNP 129802 to 130402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:53,065 DEBUG Processing 463/513 atomic regions from SNP 138756 to 139356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:53,069 DEBUG Processing 522/681 atomic regions from SNP 156410 to 157010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:53,153 DEBUG Processing 438/561 atomic regions from SNP 131369 to 131969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:53,231 DEBUG Processing 512/643 atomic regions from SNP 153394 to 153994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:53,264 DEBUG Processing 434/599 atomic regions from SNP 130102 to 130702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:53,281 DEBUG Processing 464/513 atomic regions from SNP 139056 to 139656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:53,305 DEBUG Processing 523/681 atomic regions from SNP 156710 to 157310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:53,372 DEBUG Processing 439/561 atomic regions from SNP 131669 to 132269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:53,458 DEBUG Processing 513/643 atomic regions from SNP 153694 to 154294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:53,473 DEBUG Processing 435/599 atomic regions from SNP 130402 to 131002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:53,509 DEBUG Processing 465/513 atomic regions from SNP 139356 to 139956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:53,541 DEBUG Processing 524/681 atomic regions from SNP 157010 to 157610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:53,595 DEBUG Processing 440/561 atomic regions from SNP 131969 to 132569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:53,680 DEBUG Processing 436/599 atomic regions from SNP 130702 to 131302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:53,697 DEBUG Processing 514/643 atomic regions from SNP 153994 to 154594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:53,742 DEBUG Processing 466/513 atomic regions from SNP 139656 to 140256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:53,780 DEBUG Processing 525/681 atomic regions from SNP 157310 to 157910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:53,812 DEBUG Processing 441/561 atomic regions from SNP 132269 to 132869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:53,890 DEBUG Processing 437/599 atomic regions from SNP 131002 to 131602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:53,916 DEBUG Processing 515/643 atomic regions from SNP 154294 to 154894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:53,958 DEBUG Processing 467/513 atomic regions from SNP 139956 to 140556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:54,027 DEBUG Processing 526/681 atomic regions from SNP 157610 to 158210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:54,042 DEBUG Processing 442/561 atomic regions from SNP 132569 to 133169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:54,118 DEBUG Processing 438/599 atomic regions from SNP 131302 to 131902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:54,142 DEBUG Processing 516/643 atomic regions from SNP 154594 to 155194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:54,170 DEBUG Processing 468/513 atomic regions from SNP 140256 to 140856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:54,261 DEBUG Processing 443/561 atomic regions from SNP 132869 to 133469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:54,266 DEBUG Processing 527/681 atomic regions from SNP 157910 to 158510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:54,348 DEBUG Processing 439/599 atomic regions from SNP 131602 to 132202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:54,373 DEBUG Processing 517/643 atomic regions from SNP 154894 to 155494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:54,406 DEBUG Processing 469/513 atomic regions from SNP 140556 to 141156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:54,479 DEBUG Processing 444/561 atomic regions from SNP 133169 to 133769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:54,512 DEBUG Processing 528/681 atomic regions from SNP 158210 to 158810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:54,572 DEBUG Processing 440/599 atomic regions from SNP 131902 to 132502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:54,601 DEBUG Processing 518/643 atomic regions from SNP 155194 to 155794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:54,633 DEBUG Processing 470/513 atomic regions from SNP 140856 to 141456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:54,709 DEBUG Processing 445/561 atomic regions from SNP 133469 to 134069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:54,769 DEBUG Processing 529/681 atomic regions from SNP 158510 to 159110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:54,798 DEBUG Processing 441/599 atomic regions from SNP 132202 to 132802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:54,839 DEBUG Processing 519/643 atomic regions from SNP 155494 to 156094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:54,854 DEBUG Processing 471/513 atomic regions from SNP 141156 to 141756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:54,857 DEBUG chr17 total SNP count: 147550 2025-01-31 09:48:54,857 DEBUG chr17 length: 94987271 2025-01-31 09:48:54,857 DEBUG ----------------------------------------- 2025-01-31 09:48:54,857 INFO Processing SNPs in chr17 2025-01-31 09:48:54,926 DEBUG Processing 446/561 atomic regions from SNP 133769 to 134369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:55,008 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 147550)] 2025-01-31 09:48:55,025 DEBUG Processing 530/681 atomic regions from SNP 158810 to 159410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:55,025 DEBUG Processing 442/599 atomic regions from SNP 132502 to 133102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:55,068 DEBUG Processing 472/513 atomic regions from SNP 141456 to 142056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:55,087 DEBUG Processing 520/643 atomic regions from SNP 155794 to 156394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:55,112 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:55,135 DEBUG Processing 447/561 atomic regions from SNP 134069 to 134669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:55,243 DEBUG Processing 443/599 atomic regions from SNP 132802 to 133402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:55,274 DEBUG Processing 531/681 atomic regions from SNP 159110 to 159710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:55,299 DEBUG Processing 473/513 atomic regions from SNP 141756 to 142356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:55,314 DEBUG Processing 521/643 atomic regions from SNP 156094 to 156694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:55,351 DEBUG Processing 448/561 atomic regions from SNP 134369 to 134969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:55,447 DEBUG Processing 444/599 atomic regions from SNP 133102 to 133702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:55,516 DEBUG Processing 532/681 atomic regions from SNP 159410 to 160010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:55,534 DEBUG Processing 522/643 atomic regions from SNP 156394 to 156994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:55,540 DEBUG Processing 474/513 atomic regions from SNP 142056 to 142656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:55,566 DEBUG Processing 449/561 atomic regions from SNP 134669 to 135269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:55,648 DEBUG Processing 445/599 atomic regions from SNP 133402 to 134002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:55,749 DEBUG Processing 523/643 atomic regions from SNP 156694 to 157294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:55,769 DEBUG Processing 533/681 atomic regions from SNP 159710 to 160310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:55,780 DEBUG Processing 475/513 atomic regions from SNP 142356 to 142956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:55,781 DEBUG Processing 450/561 atomic regions from SNP 134969 to 135569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:55,863 DEBUG Processing 446/599 atomic regions from SNP 133702 to 134302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:55,982 DEBUG Processing 524/643 atomic regions from SNP 156994 to 157594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:55,994 DEBUG Processing 451/561 atomic regions from SNP 135269 to 135869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:56,020 DEBUG Processing 476/513 atomic regions from SNP 142656 to 143256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:56,022 DEBUG Processing 534/681 atomic regions from SNP 160010 to 160610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:56,080 DEBUG Processing 447/599 atomic regions from SNP 134002 to 134602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:56,200 DEBUG Processing 525/643 atomic regions from SNP 157294 to 157894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:56,204 DEBUG Processing 452/561 atomic regions from SNP 135569 to 136169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:56,251 DEBUG Processing 477/513 atomic regions from SNP 142956 to 143556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:56,279 DEBUG Processing 535/681 atomic regions from SNP 160310 to 160910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:56,290 DEBUG Processing 448/599 atomic regions from SNP 134302 to 134902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:56,416 DEBUG Processing 526/643 atomic regions from SNP 157594 to 158194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:56,417 DEBUG Processing 453/561 atomic regions from SNP 135869 to 136469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:56,459 DEBUG Processing 478/513 atomic regions from SNP 143256 to 143856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:56,497 DEBUG Processing 449/599 atomic regions from SNP 134602 to 135202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:56,513 DEBUG Processing 536/681 atomic regions from SNP 160610 to 161210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:56,629 DEBUG Processing 527/643 atomic regions from SNP 157894 to 158494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:56,634 DEBUG Processing 454/561 atomic regions from SNP 136169 to 136769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:56,681 DEBUG Processing 479/513 atomic regions from SNP 143556 to 144156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:56,708 DEBUG Processing 450/599 atomic regions from SNP 134902 to 135502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:56,748 DEBUG Processing 537/681 atomic regions from SNP 160910 to 161510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:56,843 DEBUG Processing 455/561 atomic regions from SNP 136469 to 137069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:56,844 DEBUG Processing 528/643 atomic regions from SNP 158194 to 158794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:56,913 DEBUG Processing 480/513 atomic regions from SNP 143856 to 144456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:56,926 DEBUG Processing 451/599 atomic regions from SNP 135202 to 135802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:56,986 DEBUG Processing 538/681 atomic regions from SNP 161210 to 161810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:57,058 DEBUG Processing 456/561 atomic regions from SNP 136769 to 137369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:57,063 DEBUG Processing 529/643 atomic regions from SNP 158494 to 159094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:57,127 DEBUG Processing 481/513 atomic regions from SNP 144156 to 144756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:57,140 DEBUG Processing 452/599 atomic regions from SNP 135502 to 136102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:57,215 DEBUG Processing 539/681 atomic regions from SNP 161510 to 162110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:57,266 DEBUG Processing 457/561 atomic regions from SNP 137069 to 137669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:57,276 DEBUG Processing 530/643 atomic regions from SNP 158794 to 159394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:57,346 DEBUG Processing 453/599 atomic regions from SNP 135802 to 136402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:57,347 DEBUG Processing 482/513 atomic regions from SNP 144456 to 145056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:57,444 DEBUG Processing 540/681 atomic regions from SNP 161810 to 162410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:57,473 DEBUG Processing 458/561 atomic regions from SNP 137369 to 137969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:57,484 DEBUG Processing 531/643 atomic regions from SNP 159094 to 159694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:57,545 DEBUG Processing 483/513 atomic regions from SNP 144756 to 145356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:57,551 DEBUG Processing 454/599 atomic regions from SNP 136102 to 136702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:57,683 DEBUG Processing 459/561 atomic regions from SNP 137669 to 138269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:57,694 DEBUG Processing 532/643 atomic regions from SNP 159394 to 159994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:57,704 DEBUG Processing 541/681 atomic regions from SNP 162110 to 162710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:57,744 DEBUG Processing 484/513 atomic regions from SNP 145056 to 145656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:57,758 DEBUG Processing 455/599 atomic regions from SNP 136402 to 137002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:57,894 DEBUG Processing 460/561 atomic regions from SNP 137969 to 138569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:57,908 DEBUG Processing 533/643 atomic regions from SNP 159694 to 160294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:57,951 DEBUG Processing 485/513 atomic regions from SNP 145356 to 145956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:57,963 DEBUG Processing 456/599 atomic regions from SNP 136702 to 137302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:57,964 DEBUG Processing 542/681 atomic regions from SNP 162410 to 163010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:58,105 DEBUG Processing 461/561 atomic regions from SNP 138269 to 138869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:58,130 DEBUG Processing 534/643 atomic regions from SNP 159994 to 160594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:58,163 DEBUG Processing 486/513 atomic regions from SNP 145656 to 146256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:58,180 DEBUG Processing 457/599 atomic regions from SNP 137002 to 137602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:58,204 DEBUG Processing 543/681 atomic regions from SNP 162710 to 163310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:58,314 DEBUG Processing 462/561 atomic regions from SNP 138569 to 139169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:58,378 DEBUG Processing 535/643 atomic regions from SNP 160294 to 160894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:58,389 DEBUG Processing 487/513 atomic regions from SNP 145956 to 146556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:58,398 DEBUG Processing 458/599 atomic regions from SNP 137302 to 137902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:58,435 DEBUG Processing 544/681 atomic regions from SNP 163010 to 163610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:58,521 DEBUG Processing 463/561 atomic regions from SNP 138869 to 139469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:58,611 DEBUG Processing 536/643 atomic regions from SNP 160594 to 161194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:58,621 DEBUG Processing 459/599 atomic regions from SNP 137602 to 138202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:58,630 DEBUG Processing 488/513 atomic regions from SNP 146256 to 146856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:58,666 DEBUG Processing 545/681 atomic regions from SNP 163310 to 163910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:58,723 DEBUG Processing 464/561 atomic regions from SNP 139169 to 139769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:58,833 DEBUG Processing 537/643 atomic regions from SNP 160894 to 161494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:58,838 DEBUG Processing 460/599 atomic regions from SNP 137902 to 138502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:58,857 DEBUG Processing 489/513 atomic regions from SNP 146556 to 147156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:58,901 DEBUG Processing 546/681 atomic regions from SNP 163610 to 164210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:58,931 DEBUG Processing 465/561 atomic regions from SNP 139469 to 140069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:59,050 DEBUG Processing 461/599 atomic regions from SNP 138202 to 138802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:59,050 DEBUG Processing 538/643 atomic regions from SNP 161194 to 161794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:59,059 DEBUG Processing 490/513 atomic regions from SNP 146856 to 147456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:59,133 DEBUG Processing 547/681 atomic regions from SNP 163910 to 164510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:59,142 DEBUG Processing 466/561 atomic regions from SNP 139769 to 140369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:59,255 DEBUG Processing 462/599 atomic regions from SNP 138502 to 139102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:59,260 DEBUG Processing 539/643 atomic regions from SNP 161494 to 162094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:59,275 DEBUG Processing 491/513 atomic regions from SNP 147156 to 147756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:59,349 DEBUG Processing 467/561 atomic regions from SNP 140069 to 140669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:59,360 DEBUG Processing 548/681 atomic regions from SNP 164210 to 164810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:59,465 DEBUG Processing 463/599 atomic regions from SNP 138802 to 139402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:59,476 DEBUG Processing 540/643 atomic regions from SNP 161794 to 162394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:59,500 DEBUG Processing 492/513 atomic regions from SNP 147456 to 148056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:59,556 DEBUG Processing 468/561 atomic regions from SNP 140369 to 140969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:59,584 DEBUG Processing 549/681 atomic regions from SNP 164510 to 165110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:59,675 DEBUG Processing 464/599 atomic regions from SNP 139102 to 139702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:59,692 DEBUG Processing 541/643 atomic regions from SNP 162094 to 162694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:59,717 DEBUG Processing 493/513 atomic regions from SNP 147756 to 148356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:59,758 DEBUG Processing 469/561 atomic regions from SNP 140669 to 141269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:48:59,804 DEBUG Processing 550/681 atomic regions from SNP 164810 to 165410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:48:59,881 DEBUG Processing 465/599 atomic regions from SNP 139402 to 140002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:48:59,903 DEBUG Processing 542/643 atomic regions from SNP 162394 to 162994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:48:59,916 DEBUG Processing 494/513 atomic regions from SNP 148056 to 148656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:48:59,964 DEBUG Processing 470/561 atomic regions from SNP 140969 to 141569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:00,041 DEBUG Processing 551/681 atomic regions from SNP 165110 to 165710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:00,082 DEBUG Processing 466/599 atomic regions from SNP 139702 to 140302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:00,109 DEBUG Processing 495/513 atomic regions from SNP 148356 to 148956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:00,112 DEBUG Processing 543/643 atomic regions from SNP 162694 to 163294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:00,167 DEBUG Processing 471/561 atomic regions from SNP 141269 to 141869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:00,284 DEBUG Processing 552/681 atomic regions from SNP 165410 to 166010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:00,291 DEBUG Processing 467/599 atomic regions from SNP 140002 to 140602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:00,308 DEBUG Processing 496/513 atomic regions from SNP 148656 to 149256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:00,322 DEBUG Processing 544/643 atomic regions from SNP 162994 to 163594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:00,363 DEBUG Processing 472/561 atomic regions from SNP 141569 to 142169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:00,502 DEBUG Processing 468/599 atomic regions from SNP 140302 to 140902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:00,513 DEBUG Processing 497/513 atomic regions from SNP 148956 to 149556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:00,527 DEBUG Processing 553/681 atomic regions from SNP 165710 to 166310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:00,540 DEBUG Processing 545/643 atomic regions from SNP 163294 to 163894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:00,596 DEBUG Processing 473/561 atomic regions from SNP 141869 to 142469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:00,706 DEBUG Processing 469/599 atomic regions from SNP 140602 to 141202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:00,711 DEBUG Processing 498/513 atomic regions from SNP 149256 to 149856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:00,751 DEBUG Processing 546/643 atomic regions from SNP 163594 to 164194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:00,752 DEBUG Processing 554/681 atomic regions from SNP 166010 to 166610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:00,808 DEBUG Processing 474/561 atomic regions from SNP 142169 to 142769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:00,907 DEBUG Processing 470/599 atomic regions from SNP 140902 to 141502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:00,909 DEBUG Processing 499/513 atomic regions from SNP 149556 to 150156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:00,959 DEBUG Processing 547/643 atomic regions from SNP 163894 to 164494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:00,999 DEBUG Processing 555/681 atomic regions from SNP 166310 to 166910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:01,016 DEBUG Processing 475/561 atomic regions from SNP 142469 to 143069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:01,109 DEBUG Processing 500/513 atomic regions from SNP 149856 to 150456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:01,113 DEBUG Processing 471/599 atomic regions from SNP 141202 to 141802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:01,166 DEBUG Processing 548/643 atomic regions from SNP 164194 to 164794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:01,237 DEBUG Processing 556/681 atomic regions from SNP 166610 to 167210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:01,242 DEBUG Processing 476/561 atomic regions from SNP 142769 to 143369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:01,310 DEBUG Processing 501/513 atomic regions from SNP 150156 to 150756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:01,316 DEBUG Processing 472/599 atomic regions from SNP 141502 to 142102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:01,378 DEBUG Processing 549/643 atomic regions from SNP 164494 to 165094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:01,459 DEBUG Processing 477/561 atomic regions from SNP 143069 to 143669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:01,468 DEBUG Processing 557/681 atomic regions from SNP 166910 to 167510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:01,521 DEBUG Processing 502/513 atomic regions from SNP 150456 to 151056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:01,526 DEBUG Processing 473/599 atomic regions from SNP 141802 to 142402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:01,589 DEBUG Processing 550/643 atomic regions from SNP 164794 to 165394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:01,664 DEBUG Processing 478/561 atomic regions from SNP 143369 to 143969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:01,707 DEBUG Processing 558/681 atomic regions from SNP 167210 to 167810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:01,738 DEBUG Processing 474/599 atomic regions from SNP 142102 to 142702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:01,752 DEBUG Processing 503/513 atomic regions from SNP 150756 to 151356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:01,803 DEBUG Processing 551/643 atomic regions from SNP 165094 to 165694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:01,868 DEBUG Processing 479/561 atomic regions from SNP 143669 to 144269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:01,949 DEBUG Processing 559/681 atomic regions from SNP 167510 to 168110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:01,952 DEBUG Processing 475/599 atomic regions from SNP 142402 to 143002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:01,960 DEBUG Processing 504/513 atomic regions from SNP 151056 to 151656 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:02,017 DEBUG Processing 552/643 atomic regions from SNP 165394 to 165994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:02,076 DEBUG Processing 480/561 atomic regions from SNP 143969 to 144569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:02,160 DEBUG Processing 476/599 atomic regions from SNP 142702 to 143302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:02,162 DEBUG Processing 505/513 atomic regions from SNP 151356 to 151956 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:02,176 DEBUG Processing 560/681 atomic regions from SNP 167810 to 168410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:02,228 DEBUG Processing 553/643 atomic regions from SNP 165694 to 166294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:02,281 DEBUG Processing 481/561 atomic regions from SNP 144269 to 144869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:02,366 DEBUG Processing 506/513 atomic regions from SNP 151656 to 152256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:02,369 DEBUG Processing 477/599 atomic regions from SNP 143002 to 143602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:02,419 DEBUG Processing 561/681 atomic regions from SNP 168110 to 168710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:02,454 DEBUG Processing 554/643 atomic regions from SNP 165994 to 166594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:02,493 DEBUG Processing 482/561 atomic regions from SNP 144569 to 145169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:02,572 DEBUG Processing 507/513 atomic regions from SNP 151956 to 152556 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:02,575 DEBUG Processing 478/599 atomic regions from SNP 143302 to 143902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:02,664 DEBUG Processing 562/681 atomic regions from SNP 168410 to 169010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:02,668 DEBUG Processing 555/643 atomic regions from SNP 166294 to 166894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:02,700 DEBUG Processing 483/561 atomic regions from SNP 144869 to 145469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:02,768 DEBUG Processing 508/513 atomic regions from SNP 152256 to 152856 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:02,773 DEBUG Processing 479/599 atomic regions from SNP 143602 to 144202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:02,877 DEBUG Processing 556/643 atomic regions from SNP 166594 to 167194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:02,914 DEBUG Processing 484/561 atomic regions from SNP 145169 to 145769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:02,931 DEBUG Processing 563/681 atomic regions from SNP 168710 to 169310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:02,974 DEBUG Processing 509/513 atomic regions from SNP 152556 to 153156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:02,979 DEBUG Processing 480/599 atomic regions from SNP 143902 to 144502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:03,082 DEBUG Processing 557/643 atomic regions from SNP 166894 to 167494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:03,126 DEBUG Processing 485/561 atomic regions from SNP 145469 to 146069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:03,180 DEBUG Processing 564/681 atomic regions from SNP 169010 to 169610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:03,184 DEBUG Processing 510/513 atomic regions from SNP 152856 to 153456 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:03,187 DEBUG Processing 481/599 atomic regions from SNP 144202 to 144802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:03,290 DEBUG Processing 558/643 atomic regions from SNP 167194 to 167794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:03,330 DEBUG Processing 486/561 atomic regions from SNP 145769 to 146369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:03,390 DEBUG Processing 482/599 atomic regions from SNP 144502 to 145102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:03,393 DEBUG Processing 511/513 atomic regions from SNP 153156 to 153756 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:03,415 DEBUG Processing 565/681 atomic regions from SNP 169310 to 169910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:03,500 DEBUG Processing 559/643 atomic regions from SNP 167494 to 168094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:03,539 DEBUG Processing 487/561 atomic regions from SNP 146069 to 146669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:03,593 DEBUG Processing 483/599 atomic regions from SNP 144802 to 145402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:03,596 DEBUG Processing 512/513 atomic regions from SNP 153456 to 154056 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:03,644 DEBUG Processing 566/681 atomic regions from SNP 169610 to 170210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:03,709 DEBUG Processing 560/643 atomic regions from SNP 167794 to 168394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:03,748 DEBUG Processing 488/561 atomic regions from SNP 146369 to 146969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:03,798 DEBUG Processing 484/599 atomic regions from SNP 145102 to 145702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:03,801 DEBUG Processing 513/513 atomic regions from SNP 153756 to 154356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:49:03,876 DEBUG Processing 567/681 atomic regions from SNP 169910 to 170510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:03,922 DEBUG Processing 561/643 atomic regions from SNP 168094 to 168694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:03,947 DEBUG Unique SNPs positions in subchromosome 1: 154357 2025-01-31 09:49:03,959 DEBUG Processing 489/561 atomic regions from SNP 146669 to 147269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:04,000 DEBUG Processing 485/599 atomic regions from SNP 145402 to 146002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:04,129 DEBUG Processing 568/681 atomic regions from SNP 170210 to 170810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:04,138 DEBUG Processing 562/643 atomic regions from SNP 168394 to 168994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:04,161 DEBUG Processing 490/561 atomic regions from SNP 146969 to 147569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:04,205 DEBUG Processing 486/599 atomic regions from SNP 145702 to 146302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:04,360 DEBUG Processing 563/643 atomic regions from SNP 168694 to 169294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:04,367 DEBUG Processing 569/681 atomic regions from SNP 170510 to 171110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:04,370 DEBUG Processing 491/561 atomic regions from SNP 147269 to 147869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:04,412 DEBUG Processing 487/599 atomic regions from SNP 146002 to 146602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:04,573 DEBUG Processing 564/643 atomic regions from SNP 168994 to 169594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:04,574 DEBUG Processing 492/561 atomic regions from SNP 147569 to 148169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:04,590 DEBUG Processing 570/681 atomic regions from SNP 170810 to 171410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:04,621 DEBUG Processing 488/599 atomic regions from SNP 146302 to 146902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:04,780 DEBUG Processing 493/561 atomic regions from SNP 147869 to 148469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:04,782 DEBUG Processing 565/643 atomic regions from SNP 169294 to 169894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:04,819 DEBUG Processing 571/681 atomic regions from SNP 171110 to 171710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:04,857 DEBUG Processing 489/599 atomic regions from SNP 146602 to 147202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:04,990 DEBUG Processing 566/643 atomic regions from SNP 169594 to 170194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:04,991 DEBUG Processing 494/561 atomic regions from SNP 148169 to 148769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:05,054 DEBUG Processing 572/681 atomic regions from SNP 171410 to 172010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:05,068 DEBUG Processing 490/599 atomic regions from SNP 146902 to 147502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:05,145 DEBUG Subchromosome time: 122.61670857900754, subchromosome SNPs: 154357 2025-01-31 09:49:05,146 DEBUG Estimated BADs: [2.73, 0.30, 1.82, 0.30, 1.82, 0.46, 0.91, 3.64, 1.82] SNP counts: [4009, 3302, 29205, 7210, 18303, 72705, 4159, 8796, 6668] SNP IDs counts: [4009, 3302, 29205, 7210, 18303, 72705, 4159, 8796, 6668] Critical gap: 555160bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 5.62Mbp, 7.57Mbp, 24.44Mbp, 29.15Mbp, 39.21Mbp, 87.43Mbp, 89.85Mbp, 94.52Mbp, 98.21Mbp] 2025-01-31 09:49:05,146 DEBUG chr16 time: 122.61720720201265 s 2025-01-31 09:49:05,201 DEBUG Processing 567/643 atomic regions from SNP 169894 to 170494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:05,203 DEBUG Processing 495/561 atomic regions from SNP 148469 to 149069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:05,244 DEBUG chr16: Fitting background model for 9 segments 2025-01-31 09:49:05,271 DEBUG Processing 491/599 atomic regions from SNP 147202 to 147802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:05,288 DEBUG Processing 573/681 atomic regions from SNP 171710 to 172310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:05,412 DEBUG Processing 496/561 atomic regions from SNP 148769 to 149369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:05,420 DEBUG Processing 568/643 atomic regions from SNP 170194 to 170794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:05,479 DEBUG Processing 492/599 atomic regions from SNP 147502 to 148102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:05,518 DEBUG Processing 574/681 atomic regions from SNP 172010 to 172610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:05,624 DEBUG Processing 497/561 atomic regions from SNP 149069 to 149669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:05,640 DEBUG Processing 569/643 atomic regions from SNP 170494 to 171094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:05,682 DEBUG Processing 493/599 atomic regions from SNP 147802 to 148402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:05,747 DEBUG Processing 575/681 atomic regions from SNP 172310 to 172910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:05,842 DEBUG Processing 498/561 atomic regions from SNP 149369 to 149969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:05,863 DEBUG Processing 570/643 atomic regions from SNP 170794 to 171394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:05,890 DEBUG Processing 494/599 atomic regions from SNP 148102 to 148702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:05,968 DEBUG Processing 576/681 atomic regions from SNP 172610 to 173210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:06,054 DEBUG Processing 499/561 atomic regions from SNP 149669 to 150269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:06,095 DEBUG Processing 571/643 atomic regions from SNP 171094 to 171694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:06,107 DEBUG Processing 495/599 atomic regions from SNP 148402 to 149002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:06,195 DEBUG Processing 577/681 atomic regions from SNP 172910 to 173510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:06,263 DEBUG Processing 500/561 atomic regions from SNP 149969 to 150569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:06,318 DEBUG Processing 572/643 atomic regions from SNP 171394 to 171994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:06,326 DEBUG Processing 496/599 atomic regions from SNP 148702 to 149302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:06,430 DEBUG Processing 578/681 atomic regions from SNP 173210 to 173810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:06,473 DEBUG Processing 501/561 atomic regions from SNP 150269 to 150869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:06,535 DEBUG Processing 573/643 atomic regions from SNP 171694 to 172294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:06,537 DEBUG Processing 497/599 atomic regions from SNP 149002 to 149602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:06,667 DEBUG Processing 579/681 atomic regions from SNP 173510 to 174110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:06,692 DEBUG Processing 502/561 atomic regions from SNP 150569 to 151169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:06,742 DEBUG Processing 498/599 atomic regions from SNP 149302 to 149902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:06,746 DEBUG Processing 574/643 atomic regions from SNP 171994 to 172594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:06,900 DEBUG Processing 580/681 atomic regions from SNP 173810 to 174410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:06,905 DEBUG Processing 503/561 atomic regions from SNP 150869 to 151469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:06,949 DEBUG Processing 499/599 atomic regions from SNP 149602 to 150202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:06,956 DEBUG Processing 575/643 atomic regions from SNP 172294 to 172894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:07,112 DEBUG Processing 504/561 atomic regions from SNP 151169 to 151769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:07,129 DEBUG Processing 581/681 atomic regions from SNP 174110 to 174710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:07,152 DEBUG Processing 500/599 atomic regions from SNP 149902 to 150502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:07,162 DEBUG Processing 576/643 atomic regions from SNP 172594 to 173194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:07,324 DEBUG Processing 505/561 atomic regions from SNP 151469 to 152069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:07,359 DEBUG Processing 501/599 atomic regions from SNP 150202 to 150802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:07,363 DEBUG Processing 582/681 atomic regions from SNP 174410 to 175010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:07,372 DEBUG Processing 577/643 atomic regions from SNP 172894 to 173494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:07,536 DEBUG Processing 506/561 atomic regions from SNP 151769 to 152369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:07,570 DEBUG Processing 502/599 atomic regions from SNP 150502 to 151102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:07,589 DEBUG Processing 578/643 atomic regions from SNP 173194 to 173794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:07,596 DEBUG Processing 583/681 atomic regions from SNP 174710 to 175310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:07,750 DEBUG Processing 507/561 atomic regions from SNP 152069 to 152669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:07,794 DEBUG Processing 503/599 atomic regions from SNP 150802 to 151402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:07,811 DEBUG Processing 579/643 atomic regions from SNP 173494 to 174094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:07,827 DEBUG Processing 584/681 atomic regions from SNP 175010 to 175610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:07,963 DEBUG Processing 508/561 atomic regions from SNP 152369 to 152969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:08,006 DEBUG Processing 504/599 atomic regions from SNP 151102 to 151702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:08,023 DEBUG Processing 580/643 atomic regions from SNP 173794 to 174394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:08,057 DEBUG Processing 585/681 atomic regions from SNP 175310 to 175910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:08,172 DEBUG Processing 509/561 atomic regions from SNP 152669 to 153269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:08,213 DEBUG Processing 505/599 atomic regions from SNP 151402 to 152002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:08,233 DEBUG Processing 581/643 atomic regions from SNP 174094 to 174694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:08,290 DEBUG Processing 586/681 atomic regions from SNP 175610 to 176210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:08,385 DEBUG Processing 510/561 atomic regions from SNP 152969 to 153569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:08,424 DEBUG Processing 506/599 atomic regions from SNP 151702 to 152302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:08,450 DEBUG Processing 582/643 atomic regions from SNP 174394 to 174994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:08,540 DEBUG Processing 587/681 atomic regions from SNP 175910 to 176510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:08,597 DEBUG Processing 511/561 atomic regions from SNP 153269 to 153869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:08,633 DEBUG Processing 507/599 atomic regions from SNP 152002 to 152602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:08,665 DEBUG Processing 583/643 atomic regions from SNP 174694 to 175294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:08,785 DEBUG Processing 588/681 atomic regions from SNP 176210 to 176810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:08,812 DEBUG Processing 512/561 atomic regions from SNP 153569 to 154169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:08,841 DEBUG Processing 508/599 atomic regions from SNP 152302 to 152902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:08,877 DEBUG Processing 584/643 atomic regions from SNP 174994 to 175594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:09,020 DEBUG Processing 589/681 atomic regions from SNP 176510 to 177110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:09,029 DEBUG Processing 513/561 atomic regions from SNP 153869 to 154469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:09,056 DEBUG Processing 509/599 atomic regions from SNP 152602 to 153202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:09,094 DEBUG Processing 585/643 atomic regions from SNP 175294 to 175894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:09,239 DEBUG Processing 514/561 atomic regions from SNP 154169 to 154769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:09,257 DEBUG Processing 590/681 atomic regions from SNP 176810 to 177410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:09,264 DEBUG Processing 510/599 atomic regions from SNP 152902 to 153502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:09,311 DEBUG Processing 586/643 atomic regions from SNP 175594 to 176194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:09,449 DEBUG Processing 515/561 atomic regions from SNP 154469 to 155069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:09,467 DEBUG Processing 511/599 atomic regions from SNP 153202 to 153802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:09,491 DEBUG Processing 591/681 atomic regions from SNP 177110 to 177710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:09,524 DEBUG Processing 587/643 atomic regions from SNP 175894 to 176494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:09,663 DEBUG Processing 516/561 atomic regions from SNP 154769 to 155369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:09,670 DEBUG Processing 512/599 atomic regions from SNP 153502 to 154102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:09,725 DEBUG Processing 592/681 atomic regions from SNP 177410 to 178010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:09,737 DEBUG Processing 588/643 atomic regions from SNP 176194 to 176794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:09,873 DEBUG Processing 513/599 atomic regions from SNP 153802 to 154402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:09,876 DEBUG Processing 517/561 atomic regions from SNP 155069 to 155669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:09,948 DEBUG Processing 589/643 atomic regions from SNP 176494 to 177094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:09,958 DEBUG Processing 593/681 atomic regions from SNP 177710 to 178310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:10,076 DEBUG Processing 514/599 atomic regions from SNP 154102 to 154702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:10,091 DEBUG Processing 518/561 atomic regions from SNP 155369 to 155969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:10,160 DEBUG Processing 590/643 atomic regions from SNP 176794 to 177394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:10,198 DEBUG Processing 594/681 atomic regions from SNP 178010 to 178610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:10,286 DEBUG Processing 515/599 atomic regions from SNP 154402 to 155002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:10,310 DEBUG Processing 519/561 atomic regions from SNP 155669 to 156269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:10,371 DEBUG Processing 591/643 atomic regions from SNP 177094 to 177694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:10,439 DEBUG Processing 595/681 atomic regions from SNP 178310 to 178910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:10,521 DEBUG Processing 516/599 atomic regions from SNP 154702 to 155302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:10,528 DEBUG Processing 520/561 atomic regions from SNP 155969 to 156569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:10,579 DEBUG Processing 592/643 atomic regions from SNP 177394 to 177994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:10,675 DEBUG Processing 596/681 atomic regions from SNP 178610 to 179210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:10,746 DEBUG Processing 521/561 atomic regions from SNP 156269 to 156869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:10,752 DEBUG Processing 517/599 atomic regions from SNP 155002 to 155602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:10,794 DEBUG Processing 593/643 atomic regions from SNP 177694 to 178294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:10,913 DEBUG Processing 597/681 atomic regions from SNP 178910 to 179510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:10,968 DEBUG Processing 518/599 atomic regions from SNP 155302 to 155902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:10,968 DEBUG Processing 522/561 atomic regions from SNP 156569 to 157169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:11,012 DEBUG Processing 594/643 atomic regions from SNP 177994 to 178594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:11,149 DEBUG Processing 598/681 atomic regions from SNP 179210 to 179810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:11,185 DEBUG Processing 519/599 atomic regions from SNP 155602 to 156202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:11,191 DEBUG Processing 523/561 atomic regions from SNP 156869 to 157469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:11,231 DEBUG Processing 595/643 atomic regions from SNP 178294 to 178894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:11,381 DEBUG Processing 599/681 atomic regions from SNP 179510 to 180110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:11,400 DEBUG Processing 520/599 atomic regions from SNP 155902 to 156502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:11,410 DEBUG Processing 524/561 atomic regions from SNP 157169 to 157769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:11,450 DEBUG Processing 596/643 atomic regions from SNP 178594 to 179194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:11,610 DEBUG Processing 521/599 atomic regions from SNP 156202 to 156802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:11,616 DEBUG Processing 600/681 atomic regions from SNP 179810 to 180410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:11,624 DEBUG Processing 525/561 atomic regions from SNP 157469 to 158069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:11,675 DEBUG Processing 597/643 atomic regions from SNP 178894 to 179494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:11,820 DEBUG Processing 522/599 atomic regions from SNP 156502 to 157102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:11,842 DEBUG Processing 526/561 atomic regions from SNP 157769 to 158369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:11,855 DEBUG Processing 601/681 atomic regions from SNP 180110 to 180710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:11,898 DEBUG Processing 598/643 atomic regions from SNP 179194 to 179794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:12,028 DEBUG Processing 523/599 atomic regions from SNP 156802 to 157402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:12,057 DEBUG Processing 527/561 atomic regions from SNP 158069 to 158669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:12,092 DEBUG Processing 602/681 atomic regions from SNP 180410 to 181010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:12,135 DEBUG Processing 599/643 atomic regions from SNP 179494 to 180094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:12,239 DEBUG Processing 524/599 atomic regions from SNP 157102 to 157702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:12,270 DEBUG Processing 528/561 atomic regions from SNP 158369 to 158969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:12,326 DEBUG Processing 603/681 atomic regions from SNP 180710 to 181310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:12,358 DEBUG Processing 600/643 atomic regions from SNP 179794 to 180394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:12,446 DEBUG Processing 525/599 atomic regions from SNP 157402 to 158002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:12,491 DEBUG Processing 529/561 atomic regions from SNP 158669 to 159269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:12,569 DEBUG Processing 604/681 atomic regions from SNP 181010 to 181610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:12,582 DEBUG Processing 601/643 atomic regions from SNP 180094 to 180694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:12,657 DEBUG Processing 526/599 atomic regions from SNP 157702 to 158302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:12,684 DEBUG Segmenting atomic regions: 2025-01-31 09:49:12,732 DEBUG Processing 530/561 atomic regions from SNP 158969 to 159569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:12,749 DEBUG Processing 1/490 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:12,806 DEBUG Processing 602/643 atomic regions from SNP 180394 to 180994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:12,813 DEBUG Processing 605/681 atomic regions from SNP 181310 to 181910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:12,871 DEBUG Processing 527/599 atomic regions from SNP 158002 to 158602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:12,944 DEBUG Processing 2/490 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:12,971 DEBUG Processing 531/561 atomic regions from SNP 159269 to 159869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:13,031 DEBUG Processing 603/643 atomic regions from SNP 180694 to 181294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:13,055 DEBUG Processing 606/681 atomic regions from SNP 181610 to 182210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:13,083 DEBUG Processing 528/599 atomic regions from SNP 158302 to 158902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:13,137 DEBUG Processing 3/490 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:13,213 DEBUG Processing 532/561 atomic regions from SNP 159569 to 160169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:13,256 DEBUG Processing 604/643 atomic regions from SNP 180994 to 181594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:13,297 DEBUG Processing 529/599 atomic regions from SNP 158602 to 159202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:13,300 DEBUG Processing 607/681 atomic regions from SNP 181910 to 182510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:13,330 DEBUG Processing 4/490 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:13,457 DEBUG Processing 533/561 atomic regions from SNP 159869 to 160469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:13,479 DEBUG Processing 605/643 atomic regions from SNP 181294 to 181894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:13,514 DEBUG Processing 530/599 atomic regions from SNP 158902 to 159502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:13,529 DEBUG Processing 5/490 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:13,548 DEBUG Processing 608/681 atomic regions from SNP 182210 to 182810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:13,688 DEBUG Processing 534/561 atomic regions from SNP 160169 to 160769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:13,706 DEBUG Processing 606/643 atomic regions from SNP 181594 to 182194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:13,733 DEBUG Processing 6/490 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:13,735 DEBUG Processing 531/599 atomic regions from SNP 159202 to 159802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:13,786 DEBUG Processing 609/681 atomic regions from SNP 182510 to 183110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:13,908 DEBUG Processing 535/561 atomic regions from SNP 160469 to 161069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:13,928 DEBUG Processing 607/643 atomic regions from SNP 181894 to 182494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:13,934 DEBUG Processing 7/490 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:13,952 DEBUG Processing 532/599 atomic regions from SNP 159502 to 160102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:14,013 DEBUG Processing 610/681 atomic regions from SNP 182810 to 183410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:14,120 DEBUG Processing 536/561 atomic regions from SNP 160769 to 161369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:14,133 DEBUG Processing 8/490 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:14,153 DEBUG Processing 608/643 atomic regions from SNP 182194 to 182794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:14,169 DEBUG Processing 533/599 atomic regions from SNP 159802 to 160402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:14,246 DEBUG Processing 611/681 atomic regions from SNP 183110 to 183710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:14,335 DEBUG Processing 9/490 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:14,351 DEBUG Processing 537/561 atomic regions from SNP 161069 to 161669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:14,376 DEBUG Processing 609/643 atomic regions from SNP 182494 to 183094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:14,388 DEBUG Processing 534/599 atomic regions from SNP 160102 to 160702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:14,473 DEBUG Processing 612/681 atomic regions from SNP 183410 to 184010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:14,528 DEBUG Processing 10/490 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:14,568 DEBUG Processing 538/561 atomic regions from SNP 161369 to 161969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:14,589 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:49:14,597 DEBUG Processing 610/643 atomic regions from SNP 182794 to 183394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:14,601 DEBUG Processing 535/599 atomic regions from SNP 160402 to 161002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:14,697 DEBUG Processing 613/681 atomic regions from SNP 183710 to 184310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:14,719 DEBUG Processing 11/490 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:14,782 DEBUG Processing 539/561 atomic regions from SNP 161669 to 162269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:14,811 DEBUG Processing 536/599 atomic regions from SNP 160702 to 161302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:14,814 DEBUG Processing 611/643 atomic regions from SNP 183094 to 183694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:14,916 DEBUG Processing 12/490 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:14,925 DEBUG Processing 614/681 atomic regions from SNP 184010 to 184610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:14,990 DEBUG Processing 540/561 atomic regions from SNP 161969 to 162569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:15,019 DEBUG Processing 537/599 atomic regions from SNP 161002 to 161602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:15,031 DEBUG Processing 612/643 atomic regions from SNP 183394 to 183994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:15,115 DEBUG Processing 13/490 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:15,162 DEBUG Processing 615/681 atomic regions from SNP 184310 to 184910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:15,205 DEBUG Processing 541/561 atomic regions from SNP 162269 to 162869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:15,235 DEBUG Processing 538/599 atomic regions from SNP 161302 to 161902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:15,253 DEBUG Processing 613/643 atomic regions from SNP 183694 to 184294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:15,310 DEBUG Processing 14/490 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:15,401 DEBUG Processing 616/681 atomic regions from SNP 184610 to 185210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:15,445 DEBUG Processing 542/561 atomic regions from SNP 162569 to 163169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:15,451 DEBUG Processing 539/599 atomic regions from SNP 161602 to 162202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:15,477 DEBUG Processing 614/643 atomic regions from SNP 183994 to 184594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:15,511 DEBUG Processing 15/490 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:15,641 DEBUG Processing 617/681 atomic regions from SNP 184910 to 185510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:15,666 DEBUG Processing 540/599 atomic regions from SNP 161902 to 162502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:15,690 DEBUG Processing 543/561 atomic regions from SNP 162869 to 163469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:15,698 DEBUG Processing 615/643 atomic regions from SNP 184294 to 184894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:15,710 DEBUG Processing 16/490 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:15,875 DEBUG Processing 618/681 atomic regions from SNP 185210 to 185810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:15,880 DEBUG Processing 541/599 atomic regions from SNP 162202 to 162802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:15,904 DEBUG Processing 544/561 atomic regions from SNP 163169 to 163769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:15,910 DEBUG Processing 17/490 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:15,923 DEBUG Processing 616/643 atomic regions from SNP 184594 to 185194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:16,091 DEBUG Processing 542/599 atomic regions from SNP 162502 to 163102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:16,104 DEBUG Processing 18/490 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:16,107 DEBUG Processing 619/681 atomic regions from SNP 185510 to 186110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:16,115 DEBUG Processing 545/561 atomic regions from SNP 163469 to 164069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:16,142 DEBUG Processing 617/643 atomic regions from SNP 184894 to 185494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:16,302 DEBUG Processing 19/490 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:16,304 DEBUG Processing 543/599 atomic regions from SNP 162802 to 163402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:16,328 DEBUG Processing 546/561 atomic regions from SNP 163769 to 164369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:16,339 DEBUG Processing 620/681 atomic regions from SNP 185810 to 186410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:16,360 DEBUG Processing 618/643 atomic regions from SNP 185194 to 185794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:16,501 DEBUG Processing 20/490 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:16,521 DEBUG Processing 544/599 atomic regions from SNP 163102 to 163702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:16,554 DEBUG Processing 547/561 atomic regions from SNP 164069 to 164669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:16,574 DEBUG Processing 621/681 atomic regions from SNP 186110 to 186710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:16,576 DEBUG Processing 619/643 atomic regions from SNP 185494 to 186094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:16,701 DEBUG Processing 21/490 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:16,736 DEBUG Processing 545/599 atomic regions from SNP 163402 to 164002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:16,773 DEBUG Processing 548/561 atomic regions from SNP 164369 to 164969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:16,798 DEBUG Processing 620/643 atomic regions from SNP 185794 to 186394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:16,813 DEBUG Processing 622/681 atomic regions from SNP 186410 to 187010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:16,897 DEBUG Processing 22/490 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:16,944 DEBUG Processing 546/599 atomic regions from SNP 163702 to 164302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:16,981 DEBUG Processing 549/561 atomic regions from SNP 164669 to 165269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:17,013 DEBUG Processing 621/643 atomic regions from SNP 186094 to 186694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:17,044 DEBUG Processing 623/681 atomic regions from SNP 186710 to 187310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:17,098 DEBUG Processing 23/490 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:17,154 DEBUG Processing 547/599 atomic regions from SNP 164002 to 164602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:17,190 DEBUG Processing 550/561 atomic regions from SNP 164969 to 165569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:17,227 DEBUG Processing 622/643 atomic regions from SNP 186394 to 186994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:17,275 DEBUG Processing 624/681 atomic regions from SNP 187010 to 187610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:17,303 DEBUG Processing 24/490 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:17,372 DEBUG Processing 548/599 atomic regions from SNP 164302 to 164902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:17,405 DEBUG Processing 551/561 atomic regions from SNP 165269 to 165869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:17,444 DEBUG Processing 623/643 atomic regions from SNP 186694 to 187294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:17,501 DEBUG Processing 25/490 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:17,512 DEBUG Processing 625/681 atomic regions from SNP 187310 to 187910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:17,597 DEBUG Processing 549/599 atomic regions from SNP 164602 to 165202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:17,633 DEBUG Processing 552/561 atomic regions from SNP 165569 to 166169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:17,667 DEBUG Processing 624/643 atomic regions from SNP 186994 to 187594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:17,693 DEBUG Processing 26/490 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:17,741 DEBUG Processing 626/681 atomic regions from SNP 187610 to 188210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:17,818 DEBUG Processing 550/599 atomic regions from SNP 164902 to 165502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:17,856 DEBUG Processing 553/561 atomic regions from SNP 165869 to 166469 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:17,884 DEBUG Processing 625/643 atomic regions from SNP 187294 to 187894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:17,884 DEBUG Processing 27/490 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:17,969 DEBUG Processing 627/681 atomic regions from SNP 187910 to 188510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:18,061 DEBUG Processing 551/599 atomic regions from SNP 165202 to 165802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:18,086 DEBUG Processing 28/490 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:18,087 DEBUG Processing 554/561 atomic regions from SNP 166169 to 166769 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:18,108 DEBUG Processing 626/643 atomic regions from SNP 187594 to 188194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:18,197 DEBUG Processing 628/681 atomic regions from SNP 188210 to 188810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:18,299 DEBUG Processing 29/490 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:18,304 DEBUG Processing 552/599 atomic regions from SNP 165502 to 166102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:18,321 DEBUG Processing 555/561 atomic regions from SNP 166469 to 167069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:18,343 DEBUG Processing 627/643 atomic regions from SNP 187894 to 188494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:18,423 DEBUG Processing 629/681 atomic regions from SNP 188510 to 189110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:18,503 DEBUG Processing 30/490 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:18,531 DEBUG Processing 556/561 atomic regions from SNP 166769 to 167369 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:18,554 DEBUG Processing 553/599 atomic regions from SNP 165802 to 166402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:18,579 DEBUG Processing 628/643 atomic regions from SNP 188194 to 188794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:18,654 DEBUG Processing 630/681 atomic regions from SNP 188810 to 189410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:18,698 DEBUG Processing 31/490 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:18,737 DEBUG Processing 557/561 atomic regions from SNP 167069 to 167669 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:18,773 DEBUG Processing 554/599 atomic regions from SNP 166102 to 166702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:18,810 DEBUG Processing 629/643 atomic regions from SNP 188494 to 189094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:18,883 DEBUG Processing 631/681 atomic regions from SNP 189110 to 189710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:18,897 DEBUG Processing 32/490 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:18,948 DEBUG Processing 558/561 atomic regions from SNP 167369 to 167969 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:18,991 DEBUG Processing 555/599 atomic regions from SNP 166402 to 167002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:19,032 DEBUG Processing 630/643 atomic regions from SNP 188794 to 189394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:19,093 DEBUG Processing 33/490 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:19,111 DEBUG Processing 632/681 atomic regions from SNP 189410 to 190010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:19,181 DEBUG Processing 559/561 atomic regions from SNP 167669 to 168269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:19,224 DEBUG Processing 556/599 atomic regions from SNP 166702 to 167302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:19,255 DEBUG Processing 631/643 atomic regions from SNP 189094 to 189694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:19,290 DEBUG Processing 34/490 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:19,338 DEBUG Processing 633/681 atomic regions from SNP 189710 to 190310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:19,411 DEBUG Processing 560/561 atomic regions from SNP 167969 to 168569 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:19,439 DEBUG Processing 557/599 atomic regions from SNP 167002 to 167602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:19,481 DEBUG Processing 632/643 atomic regions from SNP 189394 to 189994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:19,490 DEBUG Processing 35/490 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:19,574 DEBUG Processing 634/681 atomic regions from SNP 190010 to 190610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:19,622 DEBUG Processing 561/561 atomic regions from SNP 168269 to 168869 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:19,660 DEBUG Processing 558/599 atomic regions from SNP 167302 to 167902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:19,688 DEBUG Processing 36/490 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:19,706 DEBUG Processing 633/643 atomic regions from SNP 189694 to 190294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:19,759 DEBUG Unique SNPs positions in subchromosome 1: 168870 2025-01-31 09:49:19,806 DEBUG Processing 635/681 atomic regions from SNP 190310 to 190910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:19,874 DEBUG Processing 559/599 atomic regions from SNP 167602 to 168202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:19,886 DEBUG Processing 37/490 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:19,926 DEBUG Processing 634/643 atomic regions from SNP 189994 to 190594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:20,025 DEBUG Processing 636/681 atomic regions from SNP 190610 to 191210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:20,086 DEBUG Processing 38/490 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:20,092 DEBUG Processing 560/599 atomic regions from SNP 167902 to 168502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:20,152 DEBUG Processing 635/643 atomic regions from SNP 190294 to 190894 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:20,239 DEBUG Processing 637/681 atomic regions from SNP 190910 to 191510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:20,288 DEBUG Processing 39/490 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:20,310 DEBUG Processing 561/599 atomic regions from SNP 168202 to 168802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:20,377 DEBUG Processing 636/643 atomic regions from SNP 190594 to 191194 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:20,453 DEBUG Processing 638/681 atomic regions from SNP 191210 to 191810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:20,481 DEBUG Processing 40/490 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:20,522 DEBUG Processing 562/599 atomic regions from SNP 168502 to 169102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:20,604 DEBUG Processing 637/643 atomic regions from SNP 190894 to 191494 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:20,674 DEBUG Processing 639/681 atomic regions from SNP 191510 to 192110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:20,682 DEBUG Processing 41/490 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:20,756 DEBUG Processing 563/599 atomic regions from SNP 168802 to 169402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:20,824 DEBUG Processing 638/643 atomic regions from SNP 191194 to 191794 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:20,882 DEBUG Processing 42/490 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:20,893 DEBUG Processing 640/681 atomic regions from SNP 191810 to 192410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:20,990 DEBUG Processing 564/599 atomic regions from SNP 169102 to 169702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:21,037 DEBUG Processing 639/643 atomic regions from SNP 191494 to 192094 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:21,068 DEBUG Processing 43/490 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:21,115 DEBUG Processing 641/681 atomic regions from SNP 192110 to 192710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:21,223 DEBUG Processing 565/599 atomic regions from SNP 169402 to 170002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:21,258 DEBUG Processing 640/643 atomic regions from SNP 191794 to 192394 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:21,264 DEBUG Processing 44/490 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:21,357 DEBUG Processing 642/681 atomic regions from SNP 192410 to 193010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:21,474 DEBUG Processing 45/490 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:21,477 DEBUG Processing 566/599 atomic regions from SNP 169702 to 170302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:21,492 DEBUG Processing 641/643 atomic regions from SNP 192094 to 192694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:21,594 DEBUG Processing 643/681 atomic regions from SNP 192710 to 193310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:21,678 DEBUG Processing 46/490 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:21,718 DEBUG Processing 567/599 atomic regions from SNP 170002 to 170602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:21,726 DEBUG Processing 642/643 atomic regions from SNP 192394 to 192994 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:21,828 DEBUG Processing 644/681 atomic regions from SNP 193010 to 193610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:21,869 DEBUG Processing 47/490 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:21,931 DEBUG Processing 568/599 atomic regions from SNP 170302 to 170902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:21,961 DEBUG Processing 643/643 atomic regions from SNP 192694 to 193294 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:22,067 DEBUG Processing 645/681 atomic regions from SNP 193310 to 193910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:22,068 DEBUG Processing 48/490 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:22,113 DEBUG Unique SNPs positions in subchromosome 1: 193295 2025-01-31 09:49:22,144 DEBUG Processing 569/599 atomic regions from SNP 170602 to 171202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:22,270 DEBUG Processing 49/490 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:22,309 DEBUG Processing 646/681 atomic regions from SNP 193610 to 194210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:22,355 DEBUG Processing 570/599 atomic regions from SNP 170902 to 171502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:22,471 DEBUG Processing 50/490 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:22,548 DEBUG Processing 647/681 atomic regions from SNP 193910 to 194510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:22,574 DEBUG Processing 571/599 atomic regions from SNP 171202 to 171802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:22,664 DEBUG Processing 51/490 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:22,778 DEBUG Processing 572/599 atomic regions from SNP 171502 to 172102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:22,780 DEBUG Processing 648/681 atomic regions from SNP 194210 to 194810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:22,854 DEBUG Processing 52/490 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:22,988 DEBUG Processing 573/599 atomic regions from SNP 171802 to 172402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:23,017 DEBUG Processing 649/681 atomic regions from SNP 194510 to 195110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:23,019 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:49:23,021 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:49:23,047 DEBUG Processing 53/490 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:23,207 DEBUG Processing 574/599 atomic regions from SNP 172102 to 172702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:23,245 DEBUG Processing 54/490 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:23,255 DEBUG Subchromosome time: 170.34926494490355, subchromosome SNPs: 193295 2025-01-31 09:49:23,255 DEBUG Estimated BADs: [0.48, 3.85, 0.19, 9.63, 1.93, 0.12, 0.96, 2.89, 0.96, 1.93, 0.96, 9.63, 0.24, 0.96, 0.24, 0.96, 1.93, 0.96] SNP counts: [27843, 1507, 1464, 573, 3888, 1194, 18946, 1584, 28208, 9795, 27706, 100, 3964, 4947, 6144, 15498, 6770, 33164] SNP IDs counts: [27843, 1507, 1464, 573, 3888, 1194, 18946, 1584, 28208, 9795, 27706, 100, 3964, 4947, 6144, 15498, 6770, 33164] Critical gap: 612826bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 21.16Mbp, 22.05Mbp, 23.26Mbp, 23.58Mbp, 25.82Mbp, 26.64Mbp, 37.84Mbp, 38.67Mbp, 54.45Mbp, 59.66Mbp, 78.16Mbp, 78.21Mbp, 80.85Mbp, 83.74Mbp, 88.14Mbp, 96.93Mbp, 100.65Mbp, 120.42Mbp] 2025-01-31 09:49:23,255 DEBUG chr13 time: 170.34977888991125 s 2025-01-31 09:49:23,267 DEBUG Processing 650/681 atomic regions from SNP 194810 to 195410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:23,379 DEBUG chr13: Fitting background model for 18 segments 2025-01-31 09:49:23,435 DEBUG Processing 575/599 atomic regions from SNP 172402 to 173002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:23,453 DEBUG Processing 55/490 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:23,499 DEBUG Processing 651/681 atomic regions from SNP 195110 to 195710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:23,503 DEBUG Subchromosome time: 141.76511095801834, subchromosome SNPs: 168870 2025-01-31 09:49:23,504 DEBUG Estimated BADs: [1.22, 3.67, 0.61, 1.22, 0.12, 0.61, 1.22, 3.67, 1.22, 3.67, 0.41] SNP counts: [3318, 15744, 31883, 20159, 4517, 37275, 5008, 16294, 24716, 9157, 799] SNP IDs counts: [3318, 15744, 31883, 20159, 4517, 37275, 5008, 16294, 24716, 9157, 799] Critical gap: 563747bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.09Mbp, 13.85Mbp, 33.62Mbp, 45.76Mbp, 49.67Mbp, 73.06Mbp, 75.88Mbp, 84.67Mbp, 98.50Mbp, 103.36Mbp, 104.04Mbp] 2025-01-31 09:49:23,504 DEBUG chr15 time: 141.76563650509343 s 2025-01-31 09:49:23,610 DEBUG chr15: Fitting background model for 11 segments 2025-01-31 09:49:23,659 DEBUG Processing 576/599 atomic regions from SNP 172702 to 173302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:23,663 DEBUG Processing 56/490 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:23,733 DEBUG Processing 652/681 atomic regions from SNP 195410 to 196010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:23,871 DEBUG Processing 57/490 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:23,886 DEBUG Processing 577/599 atomic regions from SNP 173002 to 173602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:23,974 DEBUG Processing 653/681 atomic regions from SNP 195710 to 196310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:24,074 DEBUG Processing 58/490 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:24,107 DEBUG Processing 578/599 atomic regions from SNP 173302 to 173902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:24,224 DEBUG Processing 654/681 atomic regions from SNP 196010 to 196610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:24,285 DEBUG Processing 59/490 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:24,330 DEBUG Processing 579/599 atomic regions from SNP 173602 to 174202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:24,462 DEBUG Processing 655/681 atomic regions from SNP 196310 to 196910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:24,489 DEBUG Processing 60/490 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:24,552 DEBUG Processing 580/599 atomic regions from SNP 173902 to 174502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:24,689 DEBUG Processing 656/681 atomic regions from SNP 196610 to 197210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:24,692 DEBUG Processing 61/490 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:24,774 DEBUG Processing 581/599 atomic regions from SNP 174202 to 174802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:24,860 DEBUG chrY total SNP count: 62 2025-01-31 09:49:24,860 DEBUG chrY length: 91744698 2025-01-31 09:49:24,860 DEBUG ----------------------------------------- 2025-01-31 09:49:24,860 INFO Processing SNPs in chrY 2025-01-31 09:49:24,892 DEBUG Processing 62/490 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:24,940 DEBUG Processing 657/681 atomic regions from SNP 196910 to 197510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:24,994 DEBUG Processing 582/599 atomic regions from SNP 174502 to 175102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:25,098 DEBUG Processing 63/490 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:25,179 DEBUG Processing 658/681 atomic regions from SNP 197210 to 197810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:25,214 DEBUG Processing 583/599 atomic regions from SNP 174802 to 175402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:25,299 DEBUG Processing 64/490 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:25,416 DEBUG Processing 659/681 atomic regions from SNP 197510 to 198110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:25,439 DEBUG Processing 584/599 atomic regions from SNP 175102 to 175702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:25,500 DEBUG Processing 65/490 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:25,652 DEBUG Processing 660/681 atomic regions from SNP 197810 to 198410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:25,668 DEBUG Processing 585/599 atomic regions from SNP 175402 to 176002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:25,709 DEBUG Processing 66/490 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:25,893 DEBUG Processing 661/681 atomic regions from SNP 198110 to 198710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:25,895 DEBUG Processing 586/599 atomic regions from SNP 175702 to 176302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:25,920 DEBUG Processing 67/490 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:26,129 DEBUG Processing 587/599 atomic regions from SNP 176002 to 176602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:26,131 DEBUG Processing 662/681 atomic regions from SNP 198410 to 199010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:26,135 DEBUG Processing 68/490 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:26,343 DEBUG Processing 69/490 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:26,351 DEBUG Processing 663/681 atomic regions from SNP 198710 to 199310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:26,353 DEBUG Processing 588/599 atomic regions from SNP 176302 to 176902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:26,546 DEBUG Processing 70/490 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:26,570 DEBUG Processing 664/681 atomic regions from SNP 199010 to 199610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:26,575 DEBUG Processing 589/599 atomic regions from SNP 176602 to 177202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:26,742 DEBUG Processing 71/490 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:26,789 DEBUG Processing 590/599 atomic regions from SNP 176902 to 177502 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:26,797 DEBUG Processing 665/681 atomic regions from SNP 199310 to 199910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:26,948 DEBUG Processing 72/490 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:27,009 DEBUG Processing 591/599 atomic regions from SNP 177202 to 177802 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:27,026 DEBUG Processing 666/681 atomic regions from SNP 199610 to 200210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:27,152 DEBUG Processing 73/490 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:27,204 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:49:27,231 DEBUG Processing 592/599 atomic regions from SNP 177502 to 178102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:27,254 DEBUG Processing 667/681 atomic regions from SNP 199910 to 200510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:27,356 DEBUG Processing 74/490 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:27,452 DEBUG Processing 593/599 atomic regions from SNP 177802 to 178402 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:27,490 DEBUG Processing 668/681 atomic regions from SNP 200210 to 200810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:27,575 DEBUG Processing 75/490 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:27,675 DEBUG Processing 594/599 atomic regions from SNP 178102 to 178702 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:27,729 DEBUG Processing 669/681 atomic regions from SNP 200510 to 201110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:27,785 DEBUG Processing 76/490 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:27,902 DEBUG Processing 595/599 atomic regions from SNP 178402 to 179002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:27,961 DEBUG Processing 670/681 atomic regions from SNP 200810 to 201410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:27,984 DEBUG Processing 77/490 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:28,127 DEBUG Processing 596/599 atomic regions from SNP 178702 to 179302 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:28,180 DEBUG Processing 78/490 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:28,187 DEBUG Processing 671/681 atomic regions from SNP 201110 to 201710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:28,354 DEBUG Processing 597/599 atomic regions from SNP 179002 to 179602 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:28,382 DEBUG Processing 79/490 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:28,412 DEBUG Processing 672/681 atomic regions from SNP 201410 to 202010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:28,589 DEBUG Processing 598/599 atomic regions from SNP 179302 to 179902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:28,594 DEBUG Processing 80/490 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:28,648 DEBUG Processing 673/681 atomic regions from SNP 201710 to 202310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:28,809 DEBUG Processing 81/490 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:28,820 DEBUG Processing 599/599 atomic regions from SNP 179602 to 180202 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:28,901 DEBUG Processing 674/681 atomic regions from SNP 202010 to 202610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:28,966 DEBUG Unique SNPs positions in subchromosome 1: 180203 2025-01-31 09:49:29,014 DEBUG Processing 82/490 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:29,165 DEBUG Processing 675/681 atomic regions from SNP 202310 to 202910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:29,213 DEBUG Processing 83/490 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:29,419 DEBUG Processing 676/681 atomic regions from SNP 202610 to 203210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:29,421 DEBUG Processing 84/490 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:29,628 DEBUG Processing 85/490 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:29,673 DEBUG Processing 677/681 atomic regions from SNP 202910 to 203510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:29,840 DEBUG Processing 86/490 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:29,906 DEBUG Processing 678/681 atomic regions from SNP 203210 to 203810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:29,909 DEBUG Subchromosome time: 155.95527311507612, subchromosome SNPs: 180203 2025-01-31 09:49:29,909 DEBUG Estimated BADs: [1.62, 0.81, 0.41, 1.62, 2.43, 0.41, 1.62, 0.81, 3.24, 0.81] SNP counts: [4575, 70684, 20141, 25252, 7154, 17095, 10000, 9721, 5352, 10229] SNP IDs counts: [4575, 70684, 20141, 25252, 7154, 17095, 10000, 9721, 5352, 10229] Critical gap: 633063bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.65Mbp, 55.30Mbp, 69.16Mbp, 83.31Mbp, 87.10Mbp, 99.27Mbp, 105.05Mbp, 110.40Mbp, 113.23Mbp, 120.13Mbp] 2025-01-31 09:49:29,909 DEBUG chr12 time: 155.95571071305312 s 2025-01-31 09:49:30,037 DEBUG chr12: Fitting background model for 10 segments 2025-01-31 09:49:30,055 DEBUG Processing 87/490 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:30,147 DEBUG Processing 679/681 atomic regions from SNP 203510 to 204110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:30,266 DEBUG Processing 88/490 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:30,393 DEBUG Processing 680/681 atomic regions from SNP 203810 to 204410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:30,476 DEBUG Processing 89/490 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:30,630 DEBUG Processing 681/681 atomic regions from SNP 204110 to 204710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:30,699 DEBUG Processing 90/490 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:30,772 DEBUG Unique SNPs positions in subchromosome 1: 204711 2025-01-31 09:49:30,907 DEBUG Processing 91/490 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:31,110 DEBUG Processing 92/490 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:31,319 DEBUG Processing 93/490 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:31,515 DEBUG Processing 94/490 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:31,725 DEBUG Processing 95/490 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:31,931 DEBUG Processing 96/490 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:32,141 DEBUG Processing 97/490 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:32,361 DEBUG Processing 98/490 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:32,589 DEBUG Processing 99/490 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:32,810 DEBUG Processing 100/490 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:33,020 DEBUG Processing 101/490 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:33,245 DEBUG Processing 102/490 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:33,484 DEBUG Processing 103/490 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:33,722 DEBUG Processing 104/490 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:33,967 DEBUG Processing 105/490 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:34,211 DEBUG Processing 106/490 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:34,441 DEBUG Processing 107/490 atomic regions from SNP 31906 to 32507 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:34,665 DEBUG Processing 108/490 atomic regions from SNP 32207 to 32808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:34,797 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:49:34,912 DEBUG Processing 109/490 atomic regions from SNP 32508 to 33109 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:35,136 DEBUG Processing 110/490 atomic regions from SNP 32809 to 33410 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:35,352 DEBUG Processing 111/490 atomic regions from SNP 33110 to 33711 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:35,571 DEBUG Processing 112/490 atomic regions from SNP 33411 to 34012 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:35,739 DEBUG Subchromosome time: 184.1962747540092, subchromosome SNPs: 204711 2025-01-31 09:49:35,740 DEBUG Estimated BADs: [2.24, 0.37, 1.12, 0.56, 8.98, 1.12, 2.24, 1.12, 5.61, 1.12, 2.24, 1.12, 0.37, 2.24, 1.12, 0.37, 3.37] SNP counts: [6749, 16809, 8209, 40676, 191, 16629, 7583, 11795, 3189, 7054, 8999, 21405, 4262, 23430, 8006, 6939, 12786] SNP IDs counts: [6749, 16809, 8209, 40676, 191, 16629, 7583, 11795, 3189, 7054, 8999, 21405, 4262, 23430, 8006, 6939, 12786] Critical gap: 603466bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 6.79Mbp, 18.53Mbp, 23.25Mbp, 48.77Mbp, 48.88Mbp, 58.30Mbp, 62.45Mbp, 68.97Mbp, 70.65Mbp, 74.83Mbp, 79.62Mbp, 91.45Mbp, 94.21Mbp, 106.77Mbp, 111.20Mbp, 115.15Mbp, 122.08Mbp] 2025-01-31 09:49:35,740 DEBUG chr11 time: 184.1967214239994 s 2025-01-31 09:49:35,816 DEBUG Processing 113/490 atomic regions from SNP 33712 to 34313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:35,857 DEBUG chr11: Fitting background model for 17 segments 2025-01-31 09:49:36,058 DEBUG Processing 114/490 atomic regions from SNP 34013 to 34614 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:36,289 DEBUG Processing 115/490 atomic regions from SNP 34314 to 34915 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:36,399 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:49:36,400 DEBUG chr18: Signal quantile: 0.995. signal threshold: 7. Best RMSEA: 0.027 2025-01-31 09:49:36,507 DEBUG Processing 116/490 atomic regions from SNP 34615 to 35216 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:36,722 DEBUG Processing 117/490 atomic regions from SNP 34916 to 35517 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:36,948 DEBUG Processing 118/490 atomic regions from SNP 35217 to 35818 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:37,179 DEBUG Processing 119/490 atomic regions from SNP 35518 to 36119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:37,427 DEBUG Processing 120/490 atomic regions from SNP 35819 to 36420 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:37,658 DEBUG Processing 121/490 atomic regions from SNP 36120 to 36721 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:37,876 DEBUG Processing 122/490 atomic regions from SNP 36421 to 37022 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:38,084 DEBUG Processing 123/490 atomic regions from SNP 36722 to 37323 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:38,099 DEBUG chr18 total SNP count: 142171 2025-01-31 09:49:38,099 DEBUG chr18 length: 90702639 2025-01-31 09:49:38,099 DEBUG ----------------------------------------- 2025-01-31 09:49:38,099 INFO Processing SNPs in chr18 2025-01-31 09:49:38,247 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 142171)] 2025-01-31 09:49:38,316 DEBUG Processing 124/490 atomic regions from SNP 37023 to 37624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:38,347 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:38,527 DEBUG Processing 125/490 atomic regions from SNP 37324 to 37925 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:38,751 DEBUG Processing 126/490 atomic regions from SNP 37625 to 38226 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:38,965 DEBUG Processing 127/490 atomic regions from SNP 37926 to 38527 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:39,180 DEBUG Processing 128/490 atomic regions from SNP 38227 to 38828 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:39,400 DEBUG Processing 129/490 atomic regions from SNP 38528 to 39129 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:39,602 DEBUG Processing 130/490 atomic regions from SNP 38829 to 39430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:39,805 DEBUG Processing 131/490 atomic regions from SNP 39130 to 39731 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:40,007 DEBUG Processing 132/490 atomic regions from SNP 39431 to 40032 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:40,212 DEBUG Processing 133/490 atomic regions from SNP 39732 to 40333 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:40,411 DEBUG Processing 134/490 atomic regions from SNP 40033 to 40634 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:40,610 DEBUG Processing 135/490 atomic regions from SNP 40334 to 40935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:40,827 DEBUG Processing 136/490 atomic regions from SNP 40635 to 41236 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:41,024 DEBUG Processing 137/490 atomic regions from SNP 40936 to 41537 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:41,220 DEBUG Processing 138/490 atomic regions from SNP 41237 to 41838 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:41,345 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:49:41,346 DEBUG chr19: Signal quantile: 0.991. signal threshold: 9. Best RMSEA: 0.017 2025-01-31 09:49:41,429 DEBUG Processing 139/490 atomic regions from SNP 41538 to 42139 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:41,637 DEBUG Processing 140/490 atomic regions from SNP 41839 to 42440 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:41,841 DEBUG Processing 141/490 atomic regions from SNP 42140 to 42741 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:42,052 DEBUG Processing 142/490 atomic regions from SNP 42441 to 43042 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:42,257 DEBUG Processing 143/490 atomic regions from SNP 42742 to 43343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:42,450 DEBUG Processing 144/490 atomic regions from SNP 43043 to 43644 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:42,459 DEBUG chr19 total SNP count: 99457 2025-01-31 09:49:42,459 DEBUG chr19 length: 61431566 2025-01-31 09:49:42,459 DEBUG ----------------------------------------- 2025-01-31 09:49:42,459 INFO Processing SNPs in chr19 2025-01-31 09:49:42,563 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 99457)] 2025-01-31 09:49:42,632 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:42,645 DEBUG Processing 145/490 atomic regions from SNP 43344 to 43945 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:42,854 DEBUG Processing 146/490 atomic regions from SNP 43645 to 44246 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:43,063 DEBUG Processing 147/490 atomic regions from SNP 43946 to 44547 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:43,261 DEBUG Processing 148/490 atomic regions from SNP 44247 to 44848 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:43,461 DEBUG Processing 149/490 atomic regions from SNP 44548 to 45149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:43,658 DEBUG Processing 150/490 atomic regions from SNP 44849 to 45450 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:43,855 DEBUG Processing 151/490 atomic regions from SNP 45150 to 45751 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:44,060 DEBUG Processing 152/490 atomic regions from SNP 45451 to 46052 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:44,263 DEBUG Processing 153/490 atomic regions from SNP 45752 to 46353 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:44,459 DEBUG Processing 154/490 atomic regions from SNP 46053 to 46654 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:44,655 DEBUG Processing 155/490 atomic regions from SNP 46354 to 46955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:44,860 DEBUG Processing 156/490 atomic regions from SNP 46655 to 47256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:45,068 DEBUG Processing 157/490 atomic regions from SNP 46956 to 47557 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:45,273 DEBUG Processing 158/490 atomic regions from SNP 47257 to 47858 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:45,476 DEBUG Processing 159/490 atomic regions from SNP 47558 to 48159 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:45,671 DEBUG Processing 160/490 atomic regions from SNP 47859 to 48460 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:45,866 DEBUG Processing 161/490 atomic regions from SNP 48160 to 48761 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:46,104 DEBUG Processing 162/490 atomic regions from SNP 48461 to 49062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:46,349 DEBUG Processing 163/490 atomic regions from SNP 48762 to 49363 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:46,582 DEBUG Processing 164/490 atomic regions from SNP 49063 to 49664 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:46,787 DEBUG Processing 165/490 atomic regions from SNP 49364 to 49965 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:47,012 DEBUG Processing 166/490 atomic regions from SNP 49665 to 50266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:47,250 DEBUG Processing 167/490 atomic regions from SNP 49966 to 50567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:47,468 DEBUG Processing 168/490 atomic regions from SNP 50267 to 50868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:47,688 DEBUG Processing 169/490 atomic regions from SNP 50568 to 51169 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:47,925 DEBUG Processing 170/490 atomic regions from SNP 50869 to 51470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:48,127 DEBUG Processing 171/490 atomic regions from SNP 51170 to 51771 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:48,325 DEBUG Processing 172/490 atomic regions from SNP 51471 to 52072 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:48,537 DEBUG Processing 173/490 atomic regions from SNP 51772 to 52373 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:48,770 DEBUG Processing 174/490 atomic regions from SNP 52073 to 52674 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:48,991 DEBUG Processing 175/490 atomic regions from SNP 52374 to 52975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:49,195 DEBUG Processing 176/490 atomic regions from SNP 52675 to 53276 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:49,383 DEBUG Processing 177/490 atomic regions from SNP 52976 to 53577 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:49,584 DEBUG Processing 178/490 atomic regions from SNP 53277 to 53878 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:49,784 DEBUG Processing 179/490 atomic regions from SNP 53578 to 54179 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:49,986 DEBUG Processing 180/490 atomic regions from SNP 53879 to 54480 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:50,185 DEBUG Processing 181/490 atomic regions from SNP 54180 to 54781 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:50,381 DEBUG Processing 182/490 atomic regions from SNP 54481 to 55082 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:50,574 DEBUG Processing 183/490 atomic regions from SNP 54782 to 55383 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:50,775 DEBUG Processing 184/490 atomic regions from SNP 55083 to 55684 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:50,978 DEBUG Processing 185/490 atomic regions from SNP 55384 to 55985 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:51,177 DEBUG Processing 186/490 atomic regions from SNP 55685 to 56286 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:51,370 DEBUG Processing 187/490 atomic regions from SNP 55986 to 56587 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:51,563 DEBUG Processing 188/490 atomic regions from SNP 56287 to 56888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:51,758 DEBUG Processing 189/490 atomic regions from SNP 56588 to 57189 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:51,953 DEBUG Processing 190/490 atomic regions from SNP 56889 to 57490 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:52,144 DEBUG Processing 191/490 atomic regions from SNP 57190 to 57791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:52,341 DEBUG Processing 192/490 atomic regions from SNP 57491 to 58092 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:52,540 DEBUG Processing 193/490 atomic regions from SNP 57792 to 58393 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:52,746 DEBUG Processing 194/490 atomic regions from SNP 58093 to 58694 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:52,954 DEBUG Processing 195/490 atomic regions from SNP 58394 to 58995 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:53,146 DEBUG Processing 196/490 atomic regions from SNP 58695 to 59296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:53,333 DEBUG Processing 197/490 atomic regions from SNP 58996 to 59597 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:53,524 DEBUG Processing 198/490 atomic regions from SNP 59297 to 59898 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:53,721 DEBUG Processing 199/490 atomic regions from SNP 59598 to 60199 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:53,923 DEBUG Processing 200/490 atomic regions from SNP 59899 to 60500 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:54,112 DEBUG Processing 201/490 atomic regions from SNP 60200 to 60801 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:54,298 DEBUG Processing 202/490 atomic regions from SNP 60501 to 61102 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:54,499 DEBUG Processing 203/490 atomic regions from SNP 60802 to 61403 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:54,602 DEBUG Segmenting atomic regions: 2025-01-31 09:49:54,648 DEBUG Processing 1/330 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:54,705 DEBUG Processing 204/490 atomic regions from SNP 61103 to 61704 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:54,811 DEBUG Processing 2/330 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:54,905 DEBUG Processing 205/490 atomic regions from SNP 61404 to 62005 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:54,979 DEBUG Processing 3/330 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:55,097 DEBUG Processing 206/490 atomic regions from SNP 61705 to 62306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:55,151 DEBUG Processing 4/330 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:55,295 DEBUG Processing 207/490 atomic regions from SNP 62006 to 62607 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:55,324 DEBUG Processing 5/330 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:55,432 DEBUG Segmenting atomic regions: 2025-01-31 09:49:55,496 DEBUG Processing 208/490 atomic regions from SNP 62307 to 62908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:55,497 DEBUG Processing 1/472 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:55,511 DEBUG Processing 6/330 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:55,693 DEBUG Processing 2/472 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:55,702 DEBUG Processing 209/490 atomic regions from SNP 62608 to 63209 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:55,715 DEBUG Processing 7/330 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:55,893 DEBUG Processing 3/472 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:55,902 DEBUG Processing 8/330 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:55,909 DEBUG Processing 210/490 atomic regions from SNP 62909 to 63510 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:56,081 DEBUG Processing 9/330 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:56,088 DEBUG Processing 4/472 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:56,111 DEBUG Processing 211/490 atomic regions from SNP 63210 to 63811 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:56,241 DEBUG Processing 10/330 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:56,271 DEBUG Processing 5/472 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:56,300 DEBUG Processing 212/490 atomic regions from SNP 63511 to 64112 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:56,417 DEBUG Processing 11/330 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:56,466 DEBUG Processing 6/472 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:56,496 DEBUG Processing 213/490 atomic regions from SNP 63812 to 64413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:56,598 DEBUG Processing 12/330 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:56,663 DEBUG Processing 7/472 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:56,706 DEBUG Processing 214/490 atomic regions from SNP 64113 to 64714 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:56,790 DEBUG Processing 13/330 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:56,859 DEBUG Processing 8/472 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:56,921 DEBUG Processing 215/490 atomic regions from SNP 64414 to 65015 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:56,962 DEBUG Processing 14/330 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:57,045 DEBUG Processing 9/472 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:57,133 DEBUG Processing 216/490 atomic regions from SNP 64715 to 65316 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:57,159 DEBUG Processing 15/330 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:57,234 DEBUG Processing 10/472 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:57,331 DEBUG Processing 217/490 atomic regions from SNP 65016 to 65617 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:57,352 DEBUG Processing 16/330 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:57,432 DEBUG Processing 11/472 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:57,527 DEBUG Processing 218/490 atomic regions from SNP 65317 to 65918 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:57,544 DEBUG Processing 17/330 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:57,632 DEBUG Processing 12/472 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:57,733 DEBUG Processing 219/490 atomic regions from SNP 65618 to 66219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:57,745 DEBUG Processing 18/330 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:57,823 DEBUG Processing 13/472 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:57,954 DEBUG Processing 19/330 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:57,966 DEBUG Processing 220/490 atomic regions from SNP 65919 to 66520 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:58,016 DEBUG Processing 14/472 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:58,157 DEBUG Processing 20/330 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:58,214 DEBUG Processing 15/472 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:58,214 DEBUG Processing 221/490 atomic regions from SNP 66220 to 66821 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:58,348 DEBUG Processing 21/330 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:58,411 DEBUG Processing 16/472 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:58,440 DEBUG Processing 222/490 atomic regions from SNP 66521 to 67122 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:58,522 DEBUG Processing 22/330 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:58,614 DEBUG Processing 17/472 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:58,651 DEBUG Processing 223/490 atomic regions from SNP 66822 to 67423 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:58,703 DEBUG Processing 23/330 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:58,828 DEBUG Processing 18/472 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:58,864 DEBUG Processing 224/490 atomic regions from SNP 67123 to 67724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:58,904 DEBUG Processing 24/330 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:59,012 DEBUG Processing 19/472 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:59,067 DEBUG Processing 225/490 atomic regions from SNP 67424 to 68025 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:59,097 DEBUG Processing 25/330 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:59,197 DEBUG Processing 20/472 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:59,268 DEBUG Processing 226/490 atomic regions from SNP 67725 to 68326 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:59,293 DEBUG Processing 26/330 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:59,386 DEBUG Processing 21/472 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:59,476 DEBUG Processing 27/330 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:59,484 DEBUG Processing 227/490 atomic regions from SNP 68026 to 68627 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:59,585 DEBUG Processing 22/472 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:59,644 DEBUG Processing 28/330 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:59,710 DEBUG Processing 228/490 atomic regions from SNP 68327 to 68928 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:59,783 DEBUG Processing 23/472 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:59,819 DEBUG Processing 29/330 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:49:59,917 DEBUG Processing 229/490 atomic regions from SNP 68628 to 69229 for chr17 (subchromosome 1 of 1). 2025-01-31 09:49:59,980 DEBUG Processing 24/472 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:49:59,992 DEBUG Processing 30/330 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:00,126 DEBUG Processing 230/490 atomic regions from SNP 68929 to 69530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:00,168 DEBUG Processing 31/330 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:00,178 DEBUG Processing 25/472 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:00,326 DEBUG Processing 231/490 atomic regions from SNP 69230 to 69831 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:00,343 DEBUG Processing 32/330 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:00,378 DEBUG Processing 26/472 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:00,529 DEBUG Processing 232/490 atomic regions from SNP 69531 to 70132 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:00,542 DEBUG Processing 33/330 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:00,576 DEBUG Processing 27/472 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:00,746 DEBUG Processing 34/330 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:00,754 DEBUG Processing 233/490 atomic regions from SNP 69832 to 70433 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:00,768 DEBUG Processing 28/472 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:01,030 DEBUG Processing 35/330 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:01,072 DEBUG Processing 29/472 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:01,096 DEBUG Processing 234/490 atomic regions from SNP 70133 to 70734 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:01,185 DEBUG Processing 36/330 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:01,253 DEBUG Processing 30/472 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:01,307 DEBUG Processing 235/490 atomic regions from SNP 70434 to 71035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:01,347 DEBUG Processing 37/330 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:01,430 DEBUG Processing 31/472 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:01,506 DEBUG Processing 38/330 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:01,518 DEBUG Processing 236/490 atomic regions from SNP 70735 to 71336 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:01,615 DEBUG Processing 32/472 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:01,684 DEBUG Processing 39/330 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:01,722 DEBUG Processing 237/490 atomic regions from SNP 71036 to 71637 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:01,793 DEBUG Processing 33/472 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:01,860 DEBUG Processing 40/330 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:01,924 DEBUG Processing 238/490 atomic regions from SNP 71337 to 71938 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:01,969 DEBUG Processing 34/472 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:02,032 DEBUG Processing 41/330 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:02,130 DEBUG Processing 239/490 atomic regions from SNP 71638 to 72239 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:02,151 DEBUG Processing 35/472 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:02,187 DEBUG Processing 42/330 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:02,333 DEBUG Processing 240/490 atomic regions from SNP 71939 to 72540 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:02,339 DEBUG Processing 36/472 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:02,351 DEBUG Processing 43/330 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:02,514 DEBUG Processing 44/330 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:02,527 DEBUG Processing 37/472 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:02,530 DEBUG Processing 241/490 atomic regions from SNP 72240 to 72841 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:02,677 DEBUG Processing 45/330 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:02,715 DEBUG Processing 38/472 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:02,737 DEBUG Processing 242/490 atomic regions from SNP 72541 to 73142 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:02,836 DEBUG Processing 46/330 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:02,899 DEBUG Processing 39/472 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:02,950 DEBUG Processing 243/490 atomic regions from SNP 72842 to 73443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:03,000 DEBUG Processing 47/330 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:03,082 DEBUG Processing 40/472 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:03,153 DEBUG Processing 244/490 atomic regions from SNP 73143 to 73744 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:03,161 DEBUG Processing 48/330 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:03,273 DEBUG Processing 41/472 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:03,323 DEBUG Processing 49/330 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:03,355 DEBUG Processing 245/490 atomic regions from SNP 73444 to 74045 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:03,461 DEBUG Processing 42/472 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:03,491 DEBUG Processing 50/330 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:03,566 DEBUG Processing 246/490 atomic regions from SNP 73745 to 74346 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:03,653 DEBUG Processing 43/472 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:03,663 DEBUG Processing 51/330 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:03,768 DEBUG Processing 247/490 atomic regions from SNP 74046 to 74647 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:03,830 DEBUG Processing 52/330 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:03,842 DEBUG Processing 44/472 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:03,973 DEBUG Processing 248/490 atomic regions from SNP 74347 to 74948 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:03,988 DEBUG Processing 53/330 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:04,023 DEBUG Processing 45/472 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:04,157 DEBUG Processing 54/330 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:04,194 DEBUG Processing 249/490 atomic regions from SNP 74648 to 75249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:04,206 DEBUG Processing 46/472 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:04,325 DEBUG Processing 55/330 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:04,399 DEBUG Processing 47/472 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:04,417 DEBUG Processing 250/490 atomic regions from SNP 74949 to 75549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:04,482 DEBUG Processing 56/330 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:04,587 DEBUG Processing 48/472 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:04,624 DEBUG Processing 251/490 atomic regions from SNP 75249 to 75849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:04,647 DEBUG Processing 57/330 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:04,769 DEBUG Processing 49/472 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:04,814 DEBUG Processing 58/330 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:04,815 DEBUG Processing 252/490 atomic regions from SNP 75549 to 76149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:04,952 DEBUG Processing 50/472 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:04,980 DEBUG Processing 59/330 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:05,023 DEBUG Processing 253/490 atomic regions from SNP 75849 to 76449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:05,135 DEBUG Processing 51/472 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:05,139 DEBUG Processing 60/330 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:05,238 DEBUG Processing 254/490 atomic regions from SNP 76149 to 76749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:05,307 DEBUG Processing 61/330 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:05,327 DEBUG Processing 52/472 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:05,451 DEBUG Processing 255/490 atomic regions from SNP 76449 to 77049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:05,479 DEBUG Processing 62/330 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:05,522 DEBUG Processing 53/472 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:05,640 DEBUG Processing 63/330 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:05,654 DEBUG Processing 256/490 atomic regions from SNP 76749 to 77349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:05,719 DEBUG Processing 54/472 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:05,801 DEBUG Processing 64/330 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:05,862 DEBUG Processing 257/490 atomic regions from SNP 77049 to 77649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:05,906 DEBUG Processing 55/472 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:05,973 DEBUG Processing 65/330 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:06,073 DEBUG Processing 258/490 atomic regions from SNP 77349 to 77949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:06,096 DEBUG Processing 56/472 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:06,141 DEBUG Processing 66/330 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:06,290 DEBUG Processing 57/472 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:06,291 DEBUG Processing 259/490 atomic regions from SNP 77649 to 78249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:06,309 DEBUG Processing 67/330 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:06,482 DEBUG Processing 68/330 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:06,486 DEBUG Processing 58/472 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:06,503 DEBUG Processing 260/490 atomic regions from SNP 77949 to 78549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:06,649 DEBUG Processing 69/330 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:06,677 DEBUG Processing 59/472 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:06,712 DEBUG Processing 261/490 atomic regions from SNP 78249 to 78849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:06,816 DEBUG Processing 70/330 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:06,864 DEBUG Processing 60/472 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:06,911 DEBUG Processing 262/490 atomic regions from SNP 78549 to 79149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:06,987 DEBUG Processing 71/330 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:07,060 DEBUG Processing 61/472 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:07,122 DEBUG Processing 263/490 atomic regions from SNP 78849 to 79449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:07,154 DEBUG Processing 72/330 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:07,256 DEBUG Processing 62/472 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:07,323 DEBUG Processing 73/330 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:07,332 DEBUG Processing 264/490 atomic regions from SNP 79149 to 79749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:07,453 DEBUG Processing 63/472 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:07,494 DEBUG Processing 74/330 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:07,537 DEBUG Processing 265/490 atomic regions from SNP 79449 to 80049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:07,645 DEBUG Processing 64/472 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:07,665 DEBUG Processing 75/330 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:07,749 DEBUG Processing 266/490 atomic regions from SNP 79749 to 80349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:07,833 DEBUG Processing 76/330 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:07,834 DEBUG Processing 65/472 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:07,962 DEBUG Processing 267/490 atomic regions from SNP 80049 to 80649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:08,008 DEBUG Processing 77/330 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:08,033 DEBUG Processing 66/472 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:08,156 DEBUG Processing 268/490 atomic regions from SNP 80349 to 80949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:08,183 DEBUG Processing 78/330 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:08,235 DEBUG Processing 67/472 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:08,345 DEBUG Processing 79/330 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:08,356 DEBUG Processing 269/490 atomic regions from SNP 80649 to 81249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:08,420 DEBUG Processing 68/472 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:08,516 DEBUG Processing 80/330 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:08,569 DEBUG Processing 270/490 atomic regions from SNP 80949 to 81549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:08,605 DEBUG Processing 69/472 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:08,680 DEBUG Processing 81/330 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:08,780 DEBUG Processing 271/490 atomic regions from SNP 81249 to 81849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:08,795 DEBUG Processing 70/472 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:08,843 DEBUG Processing 82/330 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:08,986 DEBUG Processing 272/490 atomic regions from SNP 81549 to 82149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:08,994 DEBUG Processing 71/472 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:09,008 DEBUG Processing 83/330 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:09,176 DEBUG Processing 84/330 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:09,187 DEBUG Processing 72/472 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:09,188 DEBUG Processing 273/490 atomic regions from SNP 81849 to 82449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:09,342 DEBUG Processing 85/330 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:09,376 DEBUG Processing 73/472 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:09,394 DEBUG Processing 274/490 atomic regions from SNP 82149 to 82749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:09,501 DEBUG Processing 86/330 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:09,562 DEBUG Processing 74/472 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:09,604 DEBUG Processing 275/490 atomic regions from SNP 82449 to 83049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:09,667 DEBUG Processing 87/330 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:09,745 DEBUG Processing 75/472 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:09,811 DEBUG Processing 276/490 atomic regions from SNP 82749 to 83349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:09,839 DEBUG Processing 88/330 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:09,932 DEBUG Processing 76/472 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:10,006 DEBUG Processing 89/330 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:10,019 DEBUG Processing 277/490 atomic regions from SNP 83049 to 83649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:10,124 DEBUG Processing 77/472 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:10,168 DEBUG Processing 90/330 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:10,250 DEBUG Processing 278/490 atomic regions from SNP 83349 to 83949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:10,315 DEBUG Processing 78/472 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:10,338 DEBUG Processing 91/330 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:10,474 DEBUG Processing 279/490 atomic regions from SNP 83649 to 84249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:10,507 DEBUG Processing 79/472 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:10,509 DEBUG Processing 92/330 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:10,675 DEBUG Processing 93/330 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:10,696 DEBUG Processing 80/472 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:10,700 DEBUG Processing 280/490 atomic regions from SNP 83949 to 84549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:10,843 DEBUG Processing 94/330 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:10,885 DEBUG Processing 81/472 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:10,921 DEBUG Processing 281/490 atomic regions from SNP 84249 to 84849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:11,005 DEBUG Processing 95/330 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:11,071 DEBUG Processing 82/472 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:11,156 DEBUG Processing 282/490 atomic regions from SNP 84549 to 85149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:11,163 DEBUG Processing 96/330 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:11,258 DEBUG Processing 83/472 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:11,323 DEBUG Processing 97/330 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:11,378 DEBUG Processing 283/490 atomic regions from SNP 84849 to 85449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:11,441 DEBUG Processing 84/472 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:11,484 DEBUG Processing 98/330 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:11,610 DEBUG Processing 284/490 atomic regions from SNP 85149 to 85749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:11,625 DEBUG Processing 85/472 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:11,645 DEBUG Processing 99/330 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:11,809 DEBUG Processing 100/330 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:11,813 DEBUG Processing 86/472 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:11,838 DEBUG Processing 285/490 atomic regions from SNP 85449 to 86049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:11,973 DEBUG Processing 101/330 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:12,000 DEBUG Processing 87/472 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:12,043 DEBUG Processing 286/490 atomic regions from SNP 85749 to 86349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:12,138 DEBUG Processing 102/330 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:12,189 DEBUG Processing 88/472 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:12,246 DEBUG Processing 287/490 atomic regions from SNP 86049 to 86649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:12,302 DEBUG Processing 103/330 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:12,375 DEBUG Processing 89/472 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:12,449 DEBUG Processing 288/490 atomic regions from SNP 86349 to 86949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:12,463 DEBUG Processing 104/330 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:12,562 DEBUG Processing 90/472 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:12,622 DEBUG Processing 105/330 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:12,646 DEBUG Processing 289/490 atomic regions from SNP 86649 to 87249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:12,752 DEBUG Processing 91/472 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:12,794 DEBUG Processing 106/330 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:12,857 DEBUG Processing 290/490 atomic regions from SNP 86949 to 87549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:12,936 DEBUG Processing 92/472 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:12,966 DEBUG Processing 107/330 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:13,069 DEBUG Processing 291/490 atomic regions from SNP 87249 to 87849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:13,119 DEBUG Processing 93/472 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:13,128 DEBUG Processing 108/330 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:13,280 DEBUG Processing 292/490 atomic regions from SNP 87549 to 88149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:13,293 DEBUG Processing 109/330 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:13,308 DEBUG Processing 94/472 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:13,465 DEBUG Processing 110/330 atomic regions from SNP 32809 to 33410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:13,488 DEBUG Processing 293/490 atomic regions from SNP 87849 to 88449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:13,503 DEBUG Processing 95/472 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:13,678 DEBUG Processing 111/330 atomic regions from SNP 33110 to 33711 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:13,694 DEBUG Processing 96/472 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:13,694 DEBUG Processing 294/490 atomic regions from SNP 88149 to 88749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:13,842 DEBUG Processing 112/330 atomic regions from SNP 33411 to 34012 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:13,883 DEBUG Processing 97/472 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:13,899 DEBUG Processing 295/490 atomic regions from SNP 88449 to 89049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:14,006 DEBUG Processing 113/330 atomic regions from SNP 33712 to 34313 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:14,068 DEBUG Processing 98/472 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:14,105 DEBUG Processing 296/490 atomic regions from SNP 88749 to 89349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:14,167 DEBUG Processing 114/330 atomic regions from SNP 34013 to 34614 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:14,257 DEBUG Processing 99/472 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:14,314 DEBUG Processing 297/490 atomic regions from SNP 89049 to 89649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:14,327 DEBUG Processing 115/330 atomic regions from SNP 34314 to 34915 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:14,444 DEBUG Processing 100/472 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:14,492 DEBUG Processing 116/330 atomic regions from SNP 34615 to 35216 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:14,525 DEBUG Processing 298/490 atomic regions from SNP 89349 to 89949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:14,625 DEBUG Processing 101/472 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:14,656 DEBUG Processing 117/330 atomic regions from SNP 34916 to 35517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:14,729 DEBUG Processing 299/490 atomic regions from SNP 89649 to 90249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:14,810 DEBUG Processing 102/472 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:14,820 DEBUG Processing 118/330 atomic regions from SNP 35217 to 35818 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:14,924 DEBUG Processing 300/490 atomic regions from SNP 89949 to 90549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:14,984 DEBUG Processing 119/330 atomic regions from SNP 35518 to 36119 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:14,995 DEBUG Processing 103/472 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:15,131 DEBUG Processing 301/490 atomic regions from SNP 90249 to 90849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:15,144 DEBUG Processing 120/330 atomic regions from SNP 35819 to 36420 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:15,178 DEBUG Processing 104/472 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:15,312 DEBUG Processing 121/330 atomic regions from SNP 36120 to 36721 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:15,344 DEBUG Processing 302/490 atomic regions from SNP 90549 to 91149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:15,366 DEBUG Processing 105/472 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:15,477 DEBUG Processing 122/330 atomic regions from SNP 36421 to 37022 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:15,543 DEBUG Processing 303/490 atomic regions from SNP 90849 to 91449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:15,552 DEBUG Processing 106/472 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:15,644 DEBUG Processing 123/330 atomic regions from SNP 36722 to 37323 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:15,739 DEBUG Processing 304/490 atomic regions from SNP 91149 to 91749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:15,740 DEBUG Processing 107/472 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:15,804 DEBUG Processing 124/330 atomic regions from SNP 37023 to 37624 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:15,937 DEBUG Processing 108/472 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:15,950 DEBUG Processing 305/490 atomic regions from SNP 91449 to 92049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:15,973 DEBUG Processing 125/330 atomic regions from SNP 37324 to 37925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:16,128 DEBUG Processing 109/472 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:16,143 DEBUG Processing 126/330 atomic regions from SNP 37625 to 38226 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:16,158 DEBUG Processing 306/490 atomic regions from SNP 91749 to 92349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:16,311 DEBUG Processing 127/330 atomic regions from SNP 37926 to 38527 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:16,320 DEBUG Processing 110/472 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:16,367 DEBUG Processing 307/490 atomic regions from SNP 92049 to 92649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:16,477 DEBUG Processing 128/330 atomic regions from SNP 38227 to 38828 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:16,516 DEBUG Processing 111/472 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:16,572 DEBUG Processing 308/490 atomic regions from SNP 92349 to 92949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:16,652 DEBUG Processing 129/330 atomic regions from SNP 38528 to 39129 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:16,710 DEBUG Processing 112/472 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:16,774 DEBUG Processing 309/490 atomic regions from SNP 92649 to 93249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:16,817 DEBUG Processing 130/330 atomic regions from SNP 38829 to 39430 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:16,902 DEBUG Processing 113/472 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:16,977 DEBUG Processing 131/330 atomic regions from SNP 39130 to 39731 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:16,984 DEBUG Processing 310/490 atomic regions from SNP 92949 to 93549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:17,096 DEBUG Processing 114/472 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:17,142 DEBUG Processing 132/330 atomic regions from SNP 39431 to 40032 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:17,186 DEBUG Processing 311/490 atomic regions from SNP 93249 to 93849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:17,292 DEBUG Processing 115/472 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:17,318 DEBUG Processing 133/330 atomic regions from SNP 39732 to 40333 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:17,384 DEBUG Processing 312/490 atomic regions from SNP 93549 to 94149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:17,483 DEBUG Processing 116/472 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:17,484 DEBUG Processing 134/330 atomic regions from SNP 40033 to 40634 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:17,588 DEBUG Processing 313/490 atomic regions from SNP 93849 to 94449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:17,652 DEBUG Processing 135/330 atomic regions from SNP 40334 to 40935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:17,672 DEBUG Processing 117/472 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:17,785 DEBUG Processing 314/490 atomic regions from SNP 94149 to 94749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:17,817 DEBUG Processing 136/330 atomic regions from SNP 40635 to 41236 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:17,862 DEBUG Processing 118/472 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:17,983 DEBUG Processing 137/330 atomic regions from SNP 40936 to 41537 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:17,993 DEBUG Processing 315/490 atomic regions from SNP 94449 to 95049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:18,055 DEBUG Processing 119/472 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:18,148 DEBUG Processing 138/330 atomic regions from SNP 41237 to 41838 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:18,198 DEBUG Processing 316/490 atomic regions from SNP 94749 to 95349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:18,255 DEBUG Processing 120/472 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:18,326 DEBUG Processing 139/330 atomic regions from SNP 41538 to 42139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:18,392 DEBUG Processing 317/490 atomic regions from SNP 95049 to 95649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:18,443 DEBUG Processing 121/472 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:18,498 DEBUG Processing 140/330 atomic regions from SNP 41839 to 42440 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:18,602 DEBUG Processing 318/490 atomic regions from SNP 95349 to 95949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:18,636 DEBUG Processing 122/472 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:18,663 DEBUG Processing 141/330 atomic regions from SNP 42140 to 42741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:18,817 DEBUG Processing 319/490 atomic regions from SNP 95649 to 96249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:18,837 DEBUG Processing 123/472 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:18,841 DEBUG Processing 142/330 atomic regions from SNP 42441 to 43042 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:19,017 DEBUG Processing 143/330 atomic regions from SNP 42742 to 43343 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:19,020 DEBUG Processing 320/490 atomic regions from SNP 95949 to 96549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:19,037 DEBUG Processing 124/472 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:19,182 DEBUG Processing 144/330 atomic regions from SNP 43043 to 43644 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:19,219 DEBUG Processing 321/490 atomic regions from SNP 96249 to 96849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:19,227 DEBUG Processing 125/472 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:19,350 DEBUG Processing 145/330 atomic regions from SNP 43344 to 43945 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:19,410 DEBUG Processing 126/472 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:19,410 DEBUG Processing 322/490 atomic regions from SNP 96549 to 97149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:19,523 DEBUG Processing 146/330 atomic regions from SNP 43645 to 44246 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:19,596 DEBUG Processing 127/472 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:19,609 DEBUG Processing 323/490 atomic regions from SNP 96849 to 97449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:19,684 DEBUG Processing 147/330 atomic regions from SNP 43946 to 44547 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:19,791 DEBUG Processing 128/472 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:19,820 DEBUG Processing 324/490 atomic regions from SNP 97149 to 97749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:19,846 DEBUG Processing 148/330 atomic regions from SNP 44247 to 44848 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:19,979 DEBUG Processing 129/472 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:20,013 DEBUG Processing 149/330 atomic regions from SNP 44548 to 45149 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:20,026 DEBUG Processing 325/490 atomic regions from SNP 97449 to 98049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:20,163 DEBUG Processing 130/472 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:20,178 DEBUG Processing 150/330 atomic regions from SNP 44849 to 45450 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:20,229 DEBUG Processing 326/490 atomic regions from SNP 97749 to 98349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:20,342 DEBUG Processing 151/330 atomic regions from SNP 45150 to 45751 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:20,351 DEBUG Processing 131/472 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:20,437 DEBUG Processing 327/490 atomic regions from SNP 98049 to 98649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:20,509 DEBUG Processing 152/330 atomic regions from SNP 45451 to 46052 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:20,540 DEBUG Processing 132/472 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:20,639 DEBUG Processing 328/490 atomic regions from SNP 98349 to 98949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:20,676 DEBUG Processing 153/330 atomic regions from SNP 45752 to 46353 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:20,731 DEBUG Processing 133/472 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:20,837 DEBUG Processing 154/330 atomic regions from SNP 46053 to 46654 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:20,838 DEBUG Processing 329/490 atomic regions from SNP 98649 to 99249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:20,921 DEBUG Processing 134/472 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:21,000 DEBUG Processing 155/330 atomic regions from SNP 46354 to 46955 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:21,034 DEBUG Processing 330/490 atomic regions from SNP 98949 to 99549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:21,102 DEBUG Processing 135/472 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:21,167 DEBUG Processing 156/330 atomic regions from SNP 46655 to 47256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:21,235 DEBUG Processing 331/490 atomic regions from SNP 99249 to 99849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:21,284 DEBUG Processing 136/472 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:21,327 DEBUG Processing 157/330 atomic regions from SNP 46956 to 47556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:21,440 DEBUG Processing 332/490 atomic regions from SNP 99549 to 100149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:21,473 DEBUG Processing 137/472 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:21,490 DEBUG Processing 158/330 atomic regions from SNP 47256 to 47856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:21,655 DEBUG Processing 333/490 atomic regions from SNP 99849 to 100449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:21,660 DEBUG Processing 159/330 atomic regions from SNP 47556 to 48156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:21,663 DEBUG Processing 138/472 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:21,824 DEBUG Processing 160/330 atomic regions from SNP 47856 to 48456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:21,856 DEBUG Processing 139/472 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:21,877 DEBUG Processing 334/490 atomic regions from SNP 100149 to 100749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:21,994 DEBUG Processing 161/330 atomic regions from SNP 48156 to 48756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:22,048 DEBUG Processing 140/472 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:22,090 DEBUG Processing 335/490 atomic regions from SNP 100449 to 101049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:22,160 DEBUG Processing 162/330 atomic regions from SNP 48456 to 49056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:22,238 DEBUG Processing 141/472 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:22,308 DEBUG Processing 336/490 atomic regions from SNP 100749 to 101349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:22,328 DEBUG Processing 163/330 atomic regions from SNP 48756 to 49356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:22,427 DEBUG Processing 142/472 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:22,498 DEBUG Processing 164/330 atomic regions from SNP 49056 to 49656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:22,516 DEBUG Processing 337/490 atomic regions from SNP 101049 to 101649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:22,614 DEBUG Processing 143/472 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:22,658 DEBUG Processing 165/330 atomic regions from SNP 49356 to 49956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:22,707 DEBUG Processing 338/490 atomic regions from SNP 101349 to 101949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:22,801 DEBUG Processing 144/472 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:22,825 DEBUG Processing 166/330 atomic regions from SNP 49656 to 50256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:22,906 DEBUG Processing 339/490 atomic regions from SNP 101649 to 102249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:22,987 DEBUG Processing 167/330 atomic regions from SNP 49956 to 50556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:22,990 DEBUG Processing 145/472 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:23,123 DEBUG Processing 340/490 atomic regions from SNP 101949 to 102549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:23,157 DEBUG Processing 168/330 atomic regions from SNP 50256 to 50856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:23,179 DEBUG Processing 146/472 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:23,330 DEBUG Processing 169/330 atomic regions from SNP 50556 to 51156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:23,339 DEBUG Processing 341/490 atomic regions from SNP 102249 to 102849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:23,376 DEBUG Processing 147/472 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:23,493 DEBUG Processing 170/330 atomic regions from SNP 50856 to 51456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:23,545 DEBUG Processing 342/490 atomic regions from SNP 102549 to 103149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:23,579 DEBUG Processing 148/472 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:23,653 DEBUG Processing 171/330 atomic regions from SNP 51156 to 51756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:23,749 DEBUG Processing 343/490 atomic regions from SNP 102849 to 103449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:23,772 DEBUG Processing 149/472 atomic regions from SNP 44548 to 45149 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:23,819 DEBUG Processing 172/330 atomic regions from SNP 51456 to 52056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:23,954 DEBUG Processing 344/490 atomic regions from SNP 103149 to 103749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:23,956 DEBUG Processing 150/472 atomic regions from SNP 44849 to 45450 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:23,983 DEBUG Processing 173/330 atomic regions from SNP 51756 to 52356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:24,144 DEBUG Processing 151/472 atomic regions from SNP 45150 to 45751 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:24,148 DEBUG Processing 174/330 atomic regions from SNP 52056 to 52656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:24,159 DEBUG Processing 345/490 atomic regions from SNP 103449 to 104049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:24,318 DEBUG Processing 175/330 atomic regions from SNP 52356 to 52956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:24,337 DEBUG Processing 152/472 atomic regions from SNP 45451 to 46052 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:24,369 DEBUG Processing 346/490 atomic regions from SNP 103749 to 104349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:24,489 DEBUG Processing 176/330 atomic regions from SNP 52656 to 53256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:24,532 DEBUG Processing 153/472 atomic regions from SNP 45752 to 46353 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:24,578 DEBUG Processing 347/490 atomic regions from SNP 104049 to 104649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:24,656 DEBUG Processing 177/330 atomic regions from SNP 52956 to 53556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:24,725 DEBUG Processing 154/472 atomic regions from SNP 46053 to 46654 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:24,785 DEBUG Processing 348/490 atomic regions from SNP 104349 to 104949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:24,822 DEBUG Processing 178/330 atomic regions from SNP 53256 to 53856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:24,915 DEBUG Processing 155/472 atomic regions from SNP 46354 to 46955 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:24,996 DEBUG Processing 179/330 atomic regions from SNP 53556 to 54156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:25,000 DEBUG Processing 349/490 atomic regions from SNP 104649 to 105249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:25,106 DEBUG Processing 156/472 atomic regions from SNP 46655 to 47256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:25,166 DEBUG Processing 180/330 atomic regions from SNP 53856 to 54456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:25,213 DEBUG Processing 350/490 atomic regions from SNP 104949 to 105549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:25,298 DEBUG Processing 157/472 atomic regions from SNP 46956 to 47557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:25,335 DEBUG Processing 181/330 atomic regions from SNP 54156 to 54756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:25,422 DEBUG Processing 351/490 atomic regions from SNP 105249 to 105849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:25,493 DEBUG Processing 158/472 atomic regions from SNP 47257 to 47858 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:25,508 DEBUG Processing 182/330 atomic regions from SNP 54456 to 55056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:25,631 DEBUG Processing 352/490 atomic regions from SNP 105549 to 106149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:25,679 DEBUG Processing 183/330 atomic regions from SNP 54756 to 55356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:25,684 DEBUG Processing 159/472 atomic regions from SNP 47558 to 48159 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:25,837 DEBUG Processing 353/490 atomic regions from SNP 105849 to 106449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:25,847 DEBUG Processing 184/330 atomic regions from SNP 55056 to 55656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:25,872 DEBUG Processing 160/472 atomic regions from SNP 47859 to 48460 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:26,023 DEBUG Processing 185/330 atomic regions from SNP 55356 to 55956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:26,051 DEBUG Processing 354/490 atomic regions from SNP 106149 to 106749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:26,069 DEBUG Processing 161/472 atomic regions from SNP 48160 to 48761 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:26,197 DEBUG Processing 186/330 atomic regions from SNP 55656 to 56256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:26,270 DEBUG Processing 355/490 atomic regions from SNP 106449 to 107049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:26,273 DEBUG Processing 162/472 atomic regions from SNP 48461 to 49062 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:26,367 DEBUG Processing 187/330 atomic regions from SNP 55956 to 56556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:26,466 DEBUG Processing 163/472 atomic regions from SNP 48762 to 49363 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:26,479 DEBUG Processing 356/490 atomic regions from SNP 106749 to 107349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:26,554 DEBUG Processing 188/330 atomic regions from SNP 56256 to 56856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:26,654 DEBUG Processing 164/472 atomic regions from SNP 49063 to 49664 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:26,677 DEBUG Processing 357/490 atomic regions from SNP 107049 to 107649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:26,728 DEBUG Processing 189/330 atomic regions from SNP 56556 to 57156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:26,859 DEBUG Processing 165/472 atomic regions from SNP 49364 to 49965 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:26,887 DEBUG Processing 190/330 atomic regions from SNP 56856 to 57456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:26,894 DEBUG Processing 358/490 atomic regions from SNP 107349 to 107949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:27,060 DEBUG Processing 191/330 atomic regions from SNP 57156 to 57756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:27,077 DEBUG Processing 166/472 atomic regions from SNP 49665 to 50266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:27,114 DEBUG Processing 359/490 atomic regions from SNP 107649 to 108249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:27,239 DEBUG Processing 192/330 atomic regions from SNP 57456 to 58056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:27,288 DEBUG Processing 167/472 atomic regions from SNP 49966 to 50567 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:27,330 DEBUG Processing 360/490 atomic regions from SNP 107949 to 108549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:27,413 DEBUG Processing 193/330 atomic regions from SNP 57756 to 58356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:27,492 DEBUG Processing 168/472 atomic regions from SNP 50267 to 50868 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:27,549 DEBUG Processing 361/490 atomic regions from SNP 108249 to 108849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:27,586 DEBUG Processing 194/330 atomic regions from SNP 58056 to 58656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:27,691 DEBUG Processing 169/472 atomic regions from SNP 50568 to 51169 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:27,765 DEBUG Processing 362/490 atomic regions from SNP 108549 to 109149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:27,767 DEBUG Processing 195/330 atomic regions from SNP 58356 to 58956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:27,884 DEBUG Processing 170/472 atomic regions from SNP 50869 to 51470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:27,942 DEBUG Processing 196/330 atomic regions from SNP 58656 to 59256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:27,980 DEBUG Processing 363/490 atomic regions from SNP 108849 to 109449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:28,091 DEBUG Processing 171/472 atomic regions from SNP 51170 to 51771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:28,106 DEBUG Processing 197/330 atomic regions from SNP 58956 to 59556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:28,198 DEBUG Processing 364/490 atomic regions from SNP 109149 to 109749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:28,284 DEBUG Processing 198/330 atomic regions from SNP 59256 to 59856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:28,298 DEBUG Processing 172/472 atomic regions from SNP 51471 to 52072 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:28,417 DEBUG Processing 365/490 atomic regions from SNP 109449 to 110049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:28,470 DEBUG Processing 199/330 atomic regions from SNP 59556 to 60156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:28,509 DEBUG Processing 173/472 atomic regions from SNP 51772 to 52373 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:28,627 DEBUG Processing 366/490 atomic regions from SNP 109749 to 110349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:28,640 DEBUG Processing 200/330 atomic regions from SNP 59856 to 60456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:28,713 DEBUG Processing 174/472 atomic regions from SNP 52073 to 52674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:28,808 DEBUG Processing 201/330 atomic regions from SNP 60156 to 60756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:28,839 DEBUG Processing 367/490 atomic regions from SNP 110049 to 110649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:28,918 DEBUG Processing 175/472 atomic regions from SNP 52374 to 52975 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:28,992 DEBUG Processing 202/330 atomic regions from SNP 60456 to 61056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:29,057 DEBUG Processing 368/490 atomic regions from SNP 110349 to 110949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:29,109 DEBUG Processing 176/472 atomic regions from SNP 52675 to 53276 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:29,162 DEBUG Processing 203/330 atomic regions from SNP 60756 to 61356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:29,277 DEBUG Processing 369/490 atomic regions from SNP 110649 to 111249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:29,301 DEBUG Processing 177/472 atomic regions from SNP 52976 to 53577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:29,325 DEBUG Processing 204/330 atomic regions from SNP 61056 to 61656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:29,497 DEBUG Processing 370/490 atomic regions from SNP 110949 to 111549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:29,501 DEBUG Processing 205/330 atomic regions from SNP 61356 to 61956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:29,517 DEBUG Processing 178/472 atomic regions from SNP 53277 to 53878 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:29,677 DEBUG Processing 206/330 atomic regions from SNP 61656 to 62256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:29,713 DEBUG Processing 371/490 atomic regions from SNP 111249 to 111849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:29,721 DEBUG Processing 179/472 atomic regions from SNP 53578 to 54179 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:29,844 DEBUG Processing 207/330 atomic regions from SNP 61956 to 62556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:29,909 DEBUG Processing 180/472 atomic regions from SNP 53879 to 54480 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:29,929 DEBUG Processing 372/490 atomic regions from SNP 111549 to 112149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:30,015 DEBUG Processing 208/330 atomic regions from SNP 62256 to 62856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:30,099 DEBUG Processing 181/472 atomic regions from SNP 54180 to 54781 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:30,144 DEBUG Processing 373/490 atomic regions from SNP 111849 to 112449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:30,183 DEBUG Processing 209/330 atomic regions from SNP 62556 to 63156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:30,293 DEBUG Processing 182/472 atomic regions from SNP 54481 to 55082 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:30,353 DEBUG Processing 210/330 atomic regions from SNP 62856 to 63456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:30,365 DEBUG Processing 374/490 atomic regions from SNP 112149 to 112749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:30,479 DEBUG Processing 183/472 atomic regions from SNP 54782 to 55383 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:30,526 DEBUG Processing 211/330 atomic regions from SNP 63156 to 63756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:30,578 DEBUG Processing 375/490 atomic regions from SNP 112449 to 113049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:30,666 DEBUG Processing 184/472 atomic regions from SNP 55083 to 55684 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:30,692 DEBUG Processing 212/330 atomic regions from SNP 63456 to 64056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:30,785 DEBUG Processing 376/490 atomic regions from SNP 112749 to 113349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:30,854 DEBUG Processing 213/330 atomic regions from SNP 63756 to 64356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:30,862 DEBUG Processing 185/472 atomic regions from SNP 55384 to 55985 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:30,995 DEBUG Processing 377/490 atomic regions from SNP 113049 to 113649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:31,024 DEBUG Processing 214/330 atomic regions from SNP 64056 to 64656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:31,056 DEBUG Processing 186/472 atomic regions from SNP 55685 to 56286 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:31,200 DEBUG Processing 215/330 atomic regions from SNP 64356 to 64956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:31,217 DEBUG Processing 378/490 atomic regions from SNP 113349 to 113949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:31,259 DEBUG Processing 187/472 atomic regions from SNP 55986 to 56587 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:31,366 DEBUG Processing 216/330 atomic regions from SNP 64656 to 65256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:31,442 DEBUG Processing 379/490 atomic regions from SNP 113649 to 114249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:31,456 DEBUG Processing 188/472 atomic regions from SNP 56287 to 56888 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:31,544 DEBUG Processing 217/330 atomic regions from SNP 64956 to 65556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:31,640 DEBUG Processing 189/472 atomic regions from SNP 56588 to 57189 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:31,655 DEBUG Processing 380/490 atomic regions from SNP 113949 to 114549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:31,739 DEBUG Processing 218/330 atomic regions from SNP 65256 to 65856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:31,817 DEBUG Processing 190/472 atomic regions from SNP 56889 to 57490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:31,860 DEBUG Processing 381/490 atomic regions from SNP 114249 to 114849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:31,910 DEBUG Processing 219/330 atomic regions from SNP 65556 to 66156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:32,010 DEBUG Processing 191/472 atomic regions from SNP 57190 to 57791 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:32,068 DEBUG Processing 382/490 atomic regions from SNP 114549 to 115149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:32,071 DEBUG Processing 220/330 atomic regions from SNP 65856 to 66456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:32,203 DEBUG Processing 192/472 atomic regions from SNP 57491 to 58092 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:32,242 DEBUG Processing 221/330 atomic regions from SNP 66156 to 66756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:32,283 DEBUG Processing 383/490 atomic regions from SNP 114849 to 115449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:32,394 DEBUG Processing 193/472 atomic regions from SNP 57792 to 58393 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:32,413 DEBUG Processing 222/330 atomic regions from SNP 66456 to 67056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:32,502 DEBUG Processing 384/490 atomic regions from SNP 115149 to 115749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:32,582 DEBUG Processing 223/330 atomic regions from SNP 66756 to 67356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:32,586 DEBUG Processing 194/472 atomic regions from SNP 58093 to 58694 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:32,717 DEBUG Processing 385/490 atomic regions from SNP 115449 to 116049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:32,761 DEBUG Processing 224/330 atomic regions from SNP 67056 to 67656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:32,786 DEBUG Processing 195/472 atomic regions from SNP 58394 to 58995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:32,919 DEBUG Processing 386/490 atomic regions from SNP 115749 to 116349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:32,931 DEBUG Processing 225/330 atomic regions from SNP 67356 to 67956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:32,980 DEBUG Processing 196/472 atomic regions from SNP 58695 to 59296 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:33,090 DEBUG Processing 226/330 atomic regions from SNP 67656 to 68256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:33,117 DEBUG Processing 387/490 atomic regions from SNP 116049 to 116649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:33,164 DEBUG Processing 197/472 atomic regions from SNP 58996 to 59597 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:33,263 DEBUG Processing 227/330 atomic regions from SNP 67956 to 68556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:33,336 DEBUG Processing 388/490 atomic regions from SNP 116349 to 116949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:33,348 DEBUG Processing 198/472 atomic regions from SNP 59297 to 59898 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:33,448 DEBUG Processing 228/330 atomic regions from SNP 68256 to 68856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:33,538 DEBUG Processing 199/472 atomic regions from SNP 59598 to 60199 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:33,559 DEBUG Processing 389/490 atomic regions from SNP 116649 to 117249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:33,618 DEBUG Processing 229/330 atomic regions from SNP 68556 to 69156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:33,719 DEBUG Processing 200/472 atomic regions from SNP 59899 to 60500 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:33,777 DEBUG Processing 390/490 atomic regions from SNP 116949 to 117549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:33,792 DEBUG Processing 230/330 atomic regions from SNP 68856 to 69456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:33,897 DEBUG Processing 201/472 atomic regions from SNP 60200 to 60801 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:33,962 DEBUG Processing 231/330 atomic regions from SNP 69156 to 69756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:33,982 DEBUG Processing 391/490 atomic regions from SNP 117249 to 117849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:34,081 DEBUG Processing 202/472 atomic regions from SNP 60501 to 61102 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:34,154 DEBUG Processing 232/330 atomic regions from SNP 69456 to 70056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:34,186 DEBUG Processing 392/490 atomic regions from SNP 117549 to 118149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:34,271 DEBUG Processing 203/472 atomic regions from SNP 60802 to 61403 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:34,331 DEBUG Processing 233/330 atomic regions from SNP 69756 to 70356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:34,392 DEBUG Processing 393/490 atomic regions from SNP 117849 to 118449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:34,455 DEBUG Processing 204/472 atomic regions from SNP 61103 to 61704 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:34,501 DEBUG Processing 234/330 atomic regions from SNP 70056 to 70656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:34,607 DEBUG Processing 394/490 atomic regions from SNP 118149 to 118749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:34,635 DEBUG Processing 205/472 atomic regions from SNP 61404 to 62005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:34,663 DEBUG Processing 235/330 atomic regions from SNP 70356 to 70956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:34,823 DEBUG Processing 206/472 atomic regions from SNP 61705 to 62306 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:34,826 DEBUG Processing 395/490 atomic regions from SNP 118449 to 119049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:34,830 DEBUG Processing 236/330 atomic regions from SNP 70656 to 71256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:35,010 DEBUG Processing 207/472 atomic regions from SNP 62006 to 62607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:35,014 DEBUG Processing 237/330 atomic regions from SNP 70956 to 71556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:35,035 DEBUG Processing 396/490 atomic regions from SNP 118749 to 119349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:35,181 DEBUG Processing 238/330 atomic regions from SNP 71256 to 71856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:35,197 DEBUG Processing 208/472 atomic regions from SNP 62307 to 62908 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:35,241 DEBUG Processing 397/490 atomic regions from SNP 119049 to 119649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:35,345 DEBUG Processing 239/330 atomic regions from SNP 71556 to 72156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:35,383 DEBUG Processing 209/472 atomic regions from SNP 62608 to 63209 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:35,452 DEBUG Processing 398/490 atomic regions from SNP 119349 to 119949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:35,512 DEBUG Processing 240/330 atomic regions from SNP 71856 to 72456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:35,571 DEBUG Processing 210/472 atomic regions from SNP 62909 to 63510 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:35,670 DEBUG Processing 399/490 atomic regions from SNP 119649 to 120249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:35,684 DEBUG Processing 241/330 atomic regions from SNP 72156 to 72756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:35,760 DEBUG Processing 211/472 atomic regions from SNP 63210 to 63811 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:35,853 DEBUG Processing 242/330 atomic regions from SNP 72456 to 73056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:35,887 DEBUG Processing 400/490 atomic regions from SNP 119949 to 120549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:35,945 DEBUG Processing 212/472 atomic regions from SNP 63511 to 64112 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:36,035 DEBUG Processing 243/330 atomic regions from SNP 72756 to 73356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:36,105 DEBUG Processing 401/490 atomic regions from SNP 120249 to 120849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:36,136 DEBUG Processing 213/472 atomic regions from SNP 63812 to 64413 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:36,204 DEBUG Processing 244/330 atomic regions from SNP 73056 to 73656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:36,316 DEBUG Processing 402/490 atomic regions from SNP 120549 to 121149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:36,328 DEBUG Processing 214/472 atomic regions from SNP 64113 to 64714 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:36,396 DEBUG Processing 245/330 atomic regions from SNP 73356 to 73956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:36,519 DEBUG Processing 215/472 atomic regions from SNP 64414 to 65015 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:36,531 DEBUG Processing 403/490 atomic regions from SNP 120849 to 121449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:36,584 DEBUG Processing 246/330 atomic regions from SNP 73656 to 74256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:36,705 DEBUG Processing 216/472 atomic regions from SNP 64715 to 65316 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:36,754 DEBUG Processing 404/490 atomic regions from SNP 121149 to 121749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:36,759 DEBUG Processing 247/330 atomic regions from SNP 73956 to 74556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:36,893 DEBUG Processing 217/472 atomic regions from SNP 65016 to 65617 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:36,921 DEBUG Processing 248/330 atomic regions from SNP 74256 to 74856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:36,964 DEBUG Processing 405/490 atomic regions from SNP 121449 to 122049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:37,089 DEBUG Processing 218/472 atomic regions from SNP 65317 to 65918 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:37,091 DEBUG Processing 249/330 atomic regions from SNP 74556 to 75156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:37,164 DEBUG Processing 406/490 atomic regions from SNP 121749 to 122349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:37,269 DEBUG Processing 250/330 atomic regions from SNP 74856 to 75456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:37,286 DEBUG Processing 219/472 atomic regions from SNP 65618 to 66219 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:37,372 DEBUG Processing 407/490 atomic regions from SNP 122049 to 122649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:37,436 DEBUG Processing 251/330 atomic regions from SNP 75156 to 75756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:37,478 DEBUG Processing 220/472 atomic regions from SNP 65919 to 66520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:37,587 DEBUG Processing 408/490 atomic regions from SNP 122349 to 122949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:37,600 DEBUG Processing 252/330 atomic regions from SNP 75456 to 76056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:37,664 DEBUG Processing 221/472 atomic regions from SNP 66220 to 66821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:37,773 DEBUG Processing 253/330 atomic regions from SNP 75756 to 76356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:37,806 DEBUG Processing 409/490 atomic regions from SNP 122649 to 123249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:37,856 DEBUG Processing 222/472 atomic regions from SNP 66521 to 67122 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:37,941 DEBUG Processing 254/330 atomic regions from SNP 76056 to 76656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:38,021 DEBUG Processing 410/490 atomic regions from SNP 122949 to 123549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:38,050 DEBUG Processing 223/472 atomic regions from SNP 66822 to 67423 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:38,113 DEBUG Processing 255/330 atomic regions from SNP 76356 to 76956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:38,242 DEBUG Processing 224/472 atomic regions from SNP 67123 to 67724 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:38,242 DEBUG Processing 411/490 atomic regions from SNP 123249 to 123849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:38,288 DEBUG Processing 256/330 atomic regions from SNP 76656 to 77256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:38,431 DEBUG Processing 225/472 atomic regions from SNP 67424 to 68025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:38,460 DEBUG Processing 412/490 atomic regions from SNP 123549 to 124149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:38,463 DEBUG Processing 257/330 atomic regions from SNP 76956 to 77556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:38,617 DEBUG Processing 226/472 atomic regions from SNP 67725 to 68326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:38,627 DEBUG Processing 258/330 atomic regions from SNP 77256 to 77856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:38,663 DEBUG Processing 413/490 atomic regions from SNP 123849 to 124449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:38,799 DEBUG Processing 259/330 atomic regions from SNP 77556 to 78156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:38,813 DEBUG Processing 227/472 atomic regions from SNP 68026 to 68627 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:38,874 DEBUG Processing 414/490 atomic regions from SNP 124149 to 124749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:38,976 DEBUG Processing 260/330 atomic regions from SNP 77856 to 78456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:39,010 DEBUG Processing 228/472 atomic regions from SNP 68327 to 68928 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:39,080 DEBUG Processing 415/490 atomic regions from SNP 124449 to 125049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:39,148 DEBUG Processing 261/330 atomic regions from SNP 78156 to 78756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:39,204 DEBUG Processing 229/472 atomic regions from SNP 68628 to 69229 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:39,282 DEBUG Processing 416/490 atomic regions from SNP 124749 to 125349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:39,315 DEBUG Processing 262/330 atomic regions from SNP 78456 to 79056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:39,395 DEBUG Processing 230/472 atomic regions from SNP 68929 to 69530 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:39,486 DEBUG Processing 263/330 atomic regions from SNP 78756 to 79356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:39,495 DEBUG Processing 417/490 atomic regions from SNP 125049 to 125649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:39,583 DEBUG Processing 231/472 atomic regions from SNP 69230 to 69831 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:39,657 DEBUG Processing 264/330 atomic regions from SNP 79056 to 79656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:39,708 DEBUG Processing 418/490 atomic regions from SNP 125349 to 125949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:39,779 DEBUG Processing 232/472 atomic regions from SNP 69531 to 70132 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:39,822 DEBUG Processing 265/330 atomic regions from SNP 79356 to 79956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:39,911 DEBUG Processing 419/490 atomic regions from SNP 125649 to 126249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:39,978 DEBUG Processing 233/472 atomic regions from SNP 69832 to 70433 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:39,999 DEBUG Processing 266/330 atomic regions from SNP 79656 to 80256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:40,114 DEBUG Processing 420/490 atomic regions from SNP 125949 to 126549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:40,171 DEBUG Processing 234/472 atomic regions from SNP 70133 to 70734 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:40,172 DEBUG Processing 267/330 atomic regions from SNP 79956 to 80556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:40,324 DEBUG Processing 421/490 atomic regions from SNP 126249 to 126849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:40,339 DEBUG Processing 268/330 atomic regions from SNP 80256 to 80856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:40,359 DEBUG Processing 235/472 atomic regions from SNP 70434 to 71035 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:40,506 DEBUG Processing 269/330 atomic regions from SNP 80556 to 81156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:40,536 DEBUG Processing 422/490 atomic regions from SNP 126549 to 127149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:40,546 DEBUG Processing 236/472 atomic regions from SNP 70735 to 71336 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:40,679 DEBUG Processing 270/330 atomic regions from SNP 80856 to 81456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:40,738 DEBUG Processing 237/472 atomic regions from SNP 71036 to 71637 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:40,751 DEBUG Processing 423/490 atomic regions from SNP 126849 to 127449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:40,845 DEBUG Processing 271/330 atomic regions from SNP 81156 to 81756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:40,932 DEBUG Processing 238/472 atomic regions from SNP 71337 to 71938 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:40,964 DEBUG Processing 424/490 atomic regions from SNP 127149 to 127749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:41,016 DEBUG Processing 272/330 atomic regions from SNP 81456 to 82056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:41,121 DEBUG Processing 239/472 atomic regions from SNP 71638 to 72239 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:41,164 DEBUG Processing 425/490 atomic regions from SNP 127449 to 128049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:41,190 DEBUG Processing 273/330 atomic regions from SNP 81756 to 82356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:41,311 DEBUG Processing 240/472 atomic regions from SNP 71939 to 72540 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:41,359 DEBUG Processing 274/330 atomic regions from SNP 82056 to 82656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:41,362 DEBUG Processing 426/490 atomic regions from SNP 127749 to 128349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:41,499 DEBUG Processing 241/472 atomic regions from SNP 72240 to 72841 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:41,531 DEBUG Processing 275/330 atomic regions from SNP 82356 to 82956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:41,574 DEBUG Processing 427/490 atomic regions from SNP 128049 to 128649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:41,689 DEBUG Processing 242/472 atomic regions from SNP 72541 to 73142 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:41,700 DEBUG Processing 276/330 atomic regions from SNP 82656 to 83256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:41,790 DEBUG Processing 428/490 atomic regions from SNP 128349 to 128949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:41,869 DEBUG Processing 277/330 atomic regions from SNP 82956 to 83556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:41,878 DEBUG Processing 243/472 atomic regions from SNP 72842 to 73443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:42,010 DEBUG Processing 429/490 atomic regions from SNP 128649 to 129249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:42,045 DEBUG Processing 278/330 atomic regions from SNP 83256 to 83856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:42,073 DEBUG Processing 244/472 atomic regions from SNP 73143 to 73744 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:42,222 DEBUG Processing 279/330 atomic regions from SNP 83556 to 84156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:42,229 DEBUG Processing 430/490 atomic regions from SNP 128949 to 129549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:42,275 DEBUG Processing 245/472 atomic regions from SNP 73444 to 74045 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:42,388 DEBUG Processing 280/330 atomic regions from SNP 83856 to 84456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:42,431 DEBUG Processing 431/490 atomic regions from SNP 129249 to 129849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:42,469 DEBUG Processing 246/472 atomic regions from SNP 73745 to 74346 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:42,563 DEBUG Processing 281/330 atomic regions from SNP 84156 to 84756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:42,641 DEBUG Processing 432/490 atomic regions from SNP 129549 to 130149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:42,659 DEBUG Processing 247/472 atomic regions from SNP 74046 to 74647 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:42,731 DEBUG Processing 282/330 atomic regions from SNP 84456 to 85056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:42,857 DEBUG Processing 248/472 atomic regions from SNP 74347 to 74948 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:42,860 DEBUG Processing 433/490 atomic regions from SNP 129849 to 130449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:42,921 DEBUG Processing 283/330 atomic regions from SNP 84756 to 85356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:43,058 DEBUG Processing 249/472 atomic regions from SNP 74648 to 75249 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:43,081 DEBUG Processing 434/490 atomic regions from SNP 130149 to 130749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:43,102 DEBUG Processing 284/330 atomic regions from SNP 85056 to 85656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:43,252 DEBUG Processing 250/472 atomic regions from SNP 74949 to 75550 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:43,279 DEBUG Processing 285/330 atomic regions from SNP 85356 to 85956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:43,289 DEBUG Processing 435/490 atomic regions from SNP 130449 to 131049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:43,448 DEBUG Processing 251/472 atomic regions from SNP 75250 to 75851 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:43,455 DEBUG Processing 286/330 atomic regions from SNP 85656 to 86256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:43,511 DEBUG Processing 436/490 atomic regions from SNP 130749 to 131349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:43,626 DEBUG Processing 287/330 atomic regions from SNP 85956 to 86556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:43,638 DEBUG Processing 252/472 atomic regions from SNP 75551 to 76152 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:43,726 DEBUG Processing 437/490 atomic regions from SNP 131049 to 131649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:43,799 DEBUG Processing 288/330 atomic regions from SNP 86256 to 86856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:43,832 DEBUG Processing 253/472 atomic regions from SNP 75852 to 76453 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:43,940 DEBUG Processing 438/490 atomic regions from SNP 131349 to 131949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:43,972 DEBUG Processing 289/330 atomic regions from SNP 86556 to 87156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:44,025 DEBUG Processing 254/472 atomic regions from SNP 76153 to 76754 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:44,148 DEBUG Processing 290/330 atomic regions from SNP 86856 to 87456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:44,161 DEBUG Processing 439/490 atomic regions from SNP 131649 to 132249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:44,219 DEBUG Processing 255/472 atomic regions from SNP 76454 to 77055 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:44,319 DEBUG Processing 291/330 atomic regions from SNP 87156 to 87756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:44,375 DEBUG Processing 440/490 atomic regions from SNP 131949 to 132549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:44,417 DEBUG Processing 256/472 atomic regions from SNP 76755 to 77356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:44,493 DEBUG Processing 292/330 atomic regions from SNP 87456 to 88056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:44,583 DEBUG Processing 441/490 atomic regions from SNP 132249 to 132849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:44,604 DEBUG Processing 257/472 atomic regions from SNP 77056 to 77657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:44,672 DEBUG Processing 293/330 atomic regions from SNP 87756 to 88356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:44,793 DEBUG Processing 258/472 atomic regions from SNP 77357 to 77958 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:44,799 DEBUG Processing 442/490 atomic regions from SNP 132549 to 133149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:44,840 DEBUG Processing 294/330 atomic regions from SNP 88056 to 88656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:44,983 DEBUG Processing 259/472 atomic regions from SNP 77658 to 78259 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:45,005 DEBUG Processing 295/330 atomic regions from SNP 88356 to 88956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:45,009 DEBUG Processing 443/490 atomic regions from SNP 132849 to 133449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:45,176 DEBUG Processing 296/330 atomic regions from SNP 88656 to 89256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:45,178 DEBUG Processing 260/472 atomic regions from SNP 77959 to 78560 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:45,221 DEBUG Processing 444/490 atomic regions from SNP 133149 to 133749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:45,350 DEBUG Processing 297/330 atomic regions from SNP 88956 to 89556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:45,376 DEBUG Processing 261/472 atomic regions from SNP 78260 to 78861 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:45,432 DEBUG Processing 445/490 atomic regions from SNP 133449 to 134049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:45,520 DEBUG Processing 298/330 atomic regions from SNP 89256 to 89856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:45,570 DEBUG Processing 262/472 atomic regions from SNP 78561 to 79162 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:45,643 DEBUG Processing 446/490 atomic regions from SNP 133749 to 134349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:45,686 DEBUG Processing 299/330 atomic regions from SNP 89556 to 90156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:45,762 DEBUG Processing 263/472 atomic regions from SNP 78862 to 79463 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:45,854 DEBUG Processing 300/330 atomic regions from SNP 89856 to 90456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:45,856 DEBUG Processing 447/490 atomic regions from SNP 134049 to 134649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:45,950 DEBUG Processing 264/472 atomic regions from SNP 79163 to 79764 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:46,025 DEBUG Processing 301/330 atomic regions from SNP 90156 to 90756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:46,069 DEBUG Processing 448/490 atomic regions from SNP 134349 to 134949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:46,137 DEBUG Processing 265/472 atomic regions from SNP 79464 to 80065 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:46,193 DEBUG Processing 302/330 atomic regions from SNP 90456 to 91056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:46,281 DEBUG Processing 449/490 atomic regions from SNP 134649 to 135249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:46,329 DEBUG Processing 266/472 atomic regions from SNP 79765 to 80366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:46,360 DEBUG Processing 303/330 atomic regions from SNP 90756 to 91356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:46,497 DEBUG Processing 450/490 atomic regions from SNP 134949 to 135549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:46,525 DEBUG Processing 267/472 atomic regions from SNP 80066 to 80667 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:46,534 DEBUG Processing 304/330 atomic regions from SNP 91056 to 91656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:46,706 DEBUG Processing 451/490 atomic regions from SNP 135249 to 135849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:46,707 DEBUG Processing 305/330 atomic regions from SNP 91356 to 91956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:46,719 DEBUG Processing 268/472 atomic regions from SNP 80367 to 80968 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:46,879 DEBUG Processing 306/330 atomic regions from SNP 91656 to 92256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:46,911 DEBUG Processing 269/472 atomic regions from SNP 80668 to 81269 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:46,911 DEBUG Processing 452/490 atomic regions from SNP 135549 to 136149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:47,055 DEBUG Processing 307/330 atomic regions from SNP 91956 to 92556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:47,106 DEBUG Processing 270/472 atomic regions from SNP 80969 to 81570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:47,127 DEBUG Processing 453/490 atomic regions from SNP 135849 to 136449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:47,222 DEBUG Processing 308/330 atomic regions from SNP 92256 to 92856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:47,301 DEBUG Processing 271/472 atomic regions from SNP 81270 to 81870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:47,354 DEBUG Processing 454/490 atomic regions from SNP 136149 to 136749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:47,392 DEBUG Processing 309/330 atomic regions from SNP 92556 to 93156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:47,489 DEBUG Processing 272/472 atomic regions from SNP 81570 to 82170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:47,577 DEBUG Processing 455/490 atomic regions from SNP 136449 to 137049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:47,577 DEBUG Processing 310/330 atomic regions from SNP 92856 to 93456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:47,684 DEBUG Processing 273/472 atomic regions from SNP 81870 to 82470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:47,748 DEBUG Processing 311/330 atomic regions from SNP 93156 to 93756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:47,788 DEBUG Processing 456/490 atomic regions from SNP 136749 to 137349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:47,881 DEBUG Processing 274/472 atomic regions from SNP 82170 to 82770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:47,922 DEBUG Processing 312/330 atomic regions from SNP 93456 to 94056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:47,995 DEBUG Processing 457/490 atomic regions from SNP 137049 to 137649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:48,083 DEBUG Processing 275/472 atomic regions from SNP 82470 to 83070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:48,100 DEBUG Processing 313/330 atomic regions from SNP 93756 to 94356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:48,207 DEBUG Processing 458/490 atomic regions from SNP 137349 to 137949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:48,277 DEBUG Processing 314/330 atomic regions from SNP 94056 to 94656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:48,280 DEBUG Processing 276/472 atomic regions from SNP 82770 to 83370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:48,425 DEBUG Processing 459/490 atomic regions from SNP 137649 to 138249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:48,446 DEBUG Processing 315/330 atomic regions from SNP 94356 to 94956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:48,472 DEBUG Processing 277/472 atomic regions from SNP 83070 to 83670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:48,613 DEBUG Processing 316/330 atomic regions from SNP 94656 to 95256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:48,645 DEBUG Processing 460/490 atomic regions from SNP 137949 to 138549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:48,659 DEBUG Processing 278/472 atomic regions from SNP 83370 to 83970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:48,780 DEBUG Processing 317/330 atomic regions from SNP 94956 to 95556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:48,849 DEBUG Processing 279/472 atomic regions from SNP 83670 to 84270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:48,858 DEBUG Processing 461/490 atomic regions from SNP 138249 to 138849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:48,951 DEBUG Processing 318/330 atomic regions from SNP 95256 to 95856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:49,037 DEBUG Processing 280/472 atomic regions from SNP 83970 to 84570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:49,066 DEBUG Processing 462/490 atomic regions from SNP 138549 to 139149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:49,119 DEBUG Processing 319/330 atomic regions from SNP 95556 to 96156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:49,229 DEBUG Processing 281/472 atomic regions from SNP 84270 to 84870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:49,278 DEBUG Processing 463/490 atomic regions from SNP 138849 to 139449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:49,286 DEBUG Processing 320/330 atomic regions from SNP 95856 to 96456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:49,418 DEBUG Processing 282/472 atomic regions from SNP 84570 to 85170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:49,458 DEBUG Processing 321/330 atomic regions from SNP 96156 to 96756 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:49,489 DEBUG Processing 464/490 atomic regions from SNP 139149 to 139749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:49,605 DEBUG Processing 283/472 atomic regions from SNP 84870 to 85470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:49,629 DEBUG Processing 322/330 atomic regions from SNP 96456 to 97056 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:49,710 DEBUG Processing 465/490 atomic regions from SNP 139449 to 140049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:49,797 DEBUG Processing 323/330 atomic regions from SNP 96756 to 97356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:49,802 DEBUG Processing 284/472 atomic regions from SNP 85170 to 85770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:49,929 DEBUG Processing 466/490 atomic regions from SNP 139749 to 140349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:49,980 DEBUG Processing 324/330 atomic regions from SNP 97056 to 97656 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:50,008 DEBUG Processing 285/472 atomic regions from SNP 85470 to 86070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:50,135 DEBUG Processing 467/490 atomic regions from SNP 140049 to 140649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:50,162 DEBUG Processing 325/330 atomic regions from SNP 97356 to 97956 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:50,209 DEBUG Processing 286/472 atomic regions from SNP 85770 to 86370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:50,333 DEBUG Processing 326/330 atomic regions from SNP 97656 to 98256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:50,339 DEBUG Processing 468/490 atomic regions from SNP 140349 to 140949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:50,407 DEBUG Processing 287/472 atomic regions from SNP 86070 to 86670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:50,498 DEBUG Processing 327/330 atomic regions from SNP 97956 to 98556 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:50,546 DEBUG Processing 469/490 atomic regions from SNP 140649 to 141249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:50,598 DEBUG Processing 288/472 atomic regions from SNP 86370 to 86970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:50,671 DEBUG Processing 328/330 atomic regions from SNP 98256 to 98856 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:50,752 DEBUG Processing 470/490 atomic regions from SNP 140949 to 141549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:50,789 DEBUG Processing 289/472 atomic regions from SNP 86670 to 87270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:50,841 DEBUG Processing 329/330 atomic regions from SNP 98556 to 99156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:50,960 DEBUG Processing 471/490 atomic regions from SNP 141249 to 141849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:50,982 DEBUG Processing 290/472 atomic regions from SNP 86970 to 87570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:51,010 DEBUG Processing 330/330 atomic regions from SNP 98856 to 99456 for chr19 (subchromosome 1 of 1). 2025-01-31 09:50:51,146 DEBUG Unique SNPs positions in subchromosome 1: 99457 2025-01-31 09:50:51,170 DEBUG Processing 472/490 atomic regions from SNP 141549 to 142149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:51,183 DEBUG Processing 291/472 atomic regions from SNP 87270 to 87870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:51,375 DEBUG Processing 292/472 atomic regions from SNP 87570 to 88170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:51,376 DEBUG Processing 473/490 atomic regions from SNP 141849 to 142449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:51,566 DEBUG Processing 293/472 atomic regions from SNP 87870 to 88470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:51,586 DEBUG Processing 474/490 atomic regions from SNP 142149 to 142749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:51,761 DEBUG Processing 294/472 atomic regions from SNP 88170 to 88770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:51,796 DEBUG Processing 475/490 atomic regions from SNP 142449 to 143049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:51,826 DEBUG Subchromosome time: 69.19404469896108, subchromosome SNPs: 99457 2025-01-31 09:50:51,827 DEBUG Estimated BADs: [4.27, 0.53, 3.20, 0.53, 1.07, 0.36, 1.07, 2.13, 0.36, 1.07] SNP counts: [8227, 848, 4289, 18910, 4541, 3916, 24268, 11458, 8203, 14797] SNP IDs counts: [8227, 848, 4289, 18910, 4541, 3916, 24268, 11458, 8203, 14797] Critical gap: 423757bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 7.62Mbp, 8.28Mbp, 10.99Mbp, 22.66Mbp, 25.17Mbp, 27.47Mbp, 41.83Mbp, 48.01Mbp, 53.25Mbp, 61.43Mbp] 2025-01-31 09:50:51,827 DEBUG chr19 time: 69.19458692893386 s 2025-01-31 09:50:51,892 DEBUG chr19: Fitting background model for 10 segments 2025-01-31 09:50:51,961 DEBUG Processing 295/472 atomic regions from SNP 88470 to 89070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:52,011 DEBUG Processing 476/490 atomic regions from SNP 142749 to 143349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:52,159 DEBUG Processing 296/472 atomic regions from SNP 88770 to 89370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:52,226 DEBUG Processing 477/490 atomic regions from SNP 143049 to 143649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:52,359 DEBUG Processing 297/472 atomic regions from SNP 89070 to 89670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:52,439 DEBUG Processing 478/490 atomic regions from SNP 143349 to 143949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:52,556 DEBUG Processing 298/472 atomic regions from SNP 89370 to 89970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:52,657 DEBUG Processing 479/490 atomic regions from SNP 143649 to 144249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:52,754 DEBUG Processing 299/472 atomic regions from SNP 89670 to 90270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:52,876 DEBUG Processing 480/490 atomic regions from SNP 143949 to 144549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:52,952 DEBUG Processing 300/472 atomic regions from SNP 89970 to 90570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:53,087 DEBUG Processing 481/490 atomic regions from SNP 144249 to 144849 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:53,154 DEBUG Processing 301/472 atomic regions from SNP 90270 to 90870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:53,293 DEBUG Processing 482/490 atomic regions from SNP 144549 to 145149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:53,357 DEBUG Processing 302/472 atomic regions from SNP 90570 to 91170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:53,495 DEBUG Processing 483/490 atomic regions from SNP 144849 to 145449 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:53,557 DEBUG Processing 303/472 atomic regions from SNP 90870 to 91470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:53,704 DEBUG Processing 484/490 atomic regions from SNP 145149 to 145749 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:53,756 DEBUG Processing 304/472 atomic regions from SNP 91170 to 91770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:53,918 DEBUG Processing 485/490 atomic regions from SNP 145449 to 146049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:53,950 DEBUG Processing 305/472 atomic regions from SNP 91470 to 92070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:54,133 DEBUG Processing 486/490 atomic regions from SNP 145749 to 146349 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:54,155 DEBUG Processing 306/472 atomic regions from SNP 91770 to 92370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:54,350 DEBUG Processing 487/490 atomic regions from SNP 146049 to 146649 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:54,363 DEBUG Processing 307/472 atomic regions from SNP 92070 to 92670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:54,564 DEBUG Processing 488/490 atomic regions from SNP 146349 to 146949 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:54,564 DEBUG Processing 308/472 atomic regions from SNP 92370 to 92970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:54,762 DEBUG Processing 309/472 atomic regions from SNP 92670 to 93270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:54,775 DEBUG Processing 489/490 atomic regions from SNP 146649 to 147249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:54,962 DEBUG Processing 310/472 atomic regions from SNP 92970 to 93570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:54,988 DEBUG Processing 490/490 atomic regions from SNP 146949 to 147549 for chr17 (subchromosome 1 of 1). 2025-01-31 09:50:55,139 DEBUG Unique SNPs positions in subchromosome 1: 147550 2025-01-31 09:50:55,170 DEBUG Processing 311/472 atomic regions from SNP 93270 to 93870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:55,381 DEBUG Processing 312/472 atomic regions from SNP 93570 to 94170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:55,600 DEBUG Processing 313/472 atomic regions from SNP 93870 to 94470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:55,794 DEBUG Processing 314/472 atomic regions from SNP 94170 to 94770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:55,988 DEBUG Processing 315/472 atomic regions from SNP 94470 to 95070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:56,185 DEBUG Processing 316/472 atomic regions from SNP 94770 to 95370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:56,388 DEBUG Processing 317/472 atomic regions from SNP 95070 to 95670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:56,399 DEBUG Subchromosome time: 121.28735505102668, subchromosome SNPs: 147550 2025-01-31 09:50:56,400 DEBUG Estimated BADs: [0.95, 0.32, 2.84, 0.14, 0.47, 1.90, 0.47, 4.74, 0.32, 0.95, 0.14] SNP counts: [24141, 5300, 24638, 3775, 8216, 7472, 9608, 2699, 7193, 47999, 6509] SNP IDs counts: [24141, 5300, 24638, 3775, 8216, 7472, 9608, 2699, 7193, 47999, 6509] Critical gap: 549110bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 19.04Mbp, 23.53Mbp, 37.07Mbp, 40.40Mbp, 45.55Mbp, 49.56Mbp, 55.93Mbp, 57.35Mbp, 62.06Mbp, 89.77Mbp, 94.99Mbp] 2025-01-31 09:50:56,400 DEBUG chr17 time: 121.28782511502504 s 2025-01-31 09:50:56,493 DEBUG chr17: Fitting background model for 11 segments 2025-01-31 09:50:56,593 DEBUG Processing 318/472 atomic regions from SNP 95370 to 95970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:56,796 DEBUG Processing 319/472 atomic regions from SNP 95670 to 96270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:56,995 DEBUG Processing 320/472 atomic regions from SNP 95970 to 96570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:57,193 DEBUG Processing 321/472 atomic regions from SNP 96270 to 96870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:57,389 DEBUG Processing 322/472 atomic regions from SNP 96570 to 97170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:57,589 DEBUG Processing 323/472 atomic regions from SNP 96870 to 97470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:57,798 DEBUG Processing 324/472 atomic regions from SNP 97170 to 97770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:57,996 DEBUG Processing 325/472 atomic regions from SNP 97470 to 98070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:58,178 DEBUG Processing 326/472 atomic regions from SNP 97770 to 98370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:58,366 DEBUG Processing 327/472 atomic regions from SNP 98070 to 98670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:58,569 DEBUG Processing 328/472 atomic regions from SNP 98370 to 98970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:58,770 DEBUG Processing 329/472 atomic regions from SNP 98670 to 99270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:58,963 DEBUG Processing 330/472 atomic regions from SNP 98970 to 99570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:59,159 DEBUG Processing 331/472 atomic regions from SNP 99270 to 99870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:59,357 DEBUG Processing 332/472 atomic regions from SNP 99570 to 100170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:59,551 DEBUG Processing 333/472 atomic regions from SNP 99870 to 100470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:59,746 DEBUG Processing 334/472 atomic regions from SNP 100170 to 100770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:50:59,937 DEBUG Processing 335/472 atomic regions from SNP 100470 to 101070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:00,130 DEBUG Processing 336/472 atomic regions from SNP 100770 to 101370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:00,322 DEBUG Processing 337/472 atomic regions from SNP 101070 to 101670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:00,518 DEBUG Processing 338/472 atomic regions from SNP 101370 to 101970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:00,711 DEBUG Processing 339/472 atomic regions from SNP 101670 to 102270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:00,901 DEBUG Processing 340/472 atomic regions from SNP 101970 to 102570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:01,090 DEBUG Processing 341/472 atomic regions from SNP 102270 to 102870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:01,282 DEBUG Processing 342/472 atomic regions from SNP 102570 to 103170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:01,473 DEBUG Processing 343/472 atomic regions from SNP 102870 to 103470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:01,663 DEBUG Processing 344/472 atomic regions from SNP 103170 to 103770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:01,850 DEBUG Processing 345/472 atomic regions from SNP 103470 to 104070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:02,037 DEBUG Processing 346/472 atomic regions from SNP 103770 to 104370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:02,231 DEBUG Processing 347/472 atomic regions from SNP 104070 to 104670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:02,421 DEBUG Processing 348/472 atomic regions from SNP 104370 to 104970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:02,619 DEBUG Processing 349/472 atomic regions from SNP 104670 to 105270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:02,804 DEBUG Processing 350/472 atomic regions from SNP 104970 to 105570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:02,990 DEBUG Processing 351/472 atomic regions from SNP 105270 to 105870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:03,175 DEBUG Processing 352/472 atomic regions from SNP 105570 to 106170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:03,366 DEBUG Processing 353/472 atomic regions from SNP 105870 to 106470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:03,553 DEBUG Processing 354/472 atomic regions from SNP 106170 to 106770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:03,737 DEBUG Processing 355/472 atomic regions from SNP 106470 to 107070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:03,922 DEBUG Processing 356/472 atomic regions from SNP 106770 to 107370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:04,115 DEBUG Processing 357/472 atomic regions from SNP 107070 to 107670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:04,306 DEBUG Processing 358/472 atomic regions from SNP 107370 to 107970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:04,496 DEBUG Processing 359/472 atomic regions from SNP 107670 to 108270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:04,685 DEBUG Processing 360/472 atomic regions from SNP 107970 to 108570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:04,873 DEBUG Processing 361/472 atomic regions from SNP 108270 to 108870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:05,060 DEBUG Processing 362/472 atomic regions from SNP 108570 to 109170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:05,248 DEBUG Processing 363/472 atomic regions from SNP 108870 to 109470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:05,441 DEBUG Processing 364/472 atomic regions from SNP 109170 to 109770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:05,637 DEBUG Processing 365/472 atomic regions from SNP 109470 to 110070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:05,838 DEBUG Processing 366/472 atomic regions from SNP 109770 to 110370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:06,026 DEBUG Processing 367/472 atomic regions from SNP 110070 to 110670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:06,210 DEBUG Processing 368/472 atomic regions from SNP 110370 to 110970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:06,396 DEBUG Processing 369/472 atomic regions from SNP 110670 to 111270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:06,587 DEBUG Processing 370/472 atomic regions from SNP 110970 to 111570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:06,775 DEBUG Processing 371/472 atomic regions from SNP 111270 to 111870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:06,963 DEBUG Processing 372/472 atomic regions from SNP 111570 to 112170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:07,151 DEBUG Processing 373/472 atomic regions from SNP 111870 to 112470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:07,339 DEBUG Processing 374/472 atomic regions from SNP 112170 to 112770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:07,523 DEBUG Processing 375/472 atomic regions from SNP 112470 to 113070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:07,705 DEBUG Processing 376/472 atomic regions from SNP 112770 to 113370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:07,898 DEBUG Processing 377/472 atomic regions from SNP 113070 to 113670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:08,089 DEBUG Processing 378/472 atomic regions from SNP 113370 to 113970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:08,276 DEBUG Processing 379/472 atomic regions from SNP 113670 to 114270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:08,460 DEBUG Processing 380/472 atomic regions from SNP 113970 to 114570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:08,651 DEBUG Processing 381/472 atomic regions from SNP 114270 to 114870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:08,844 DEBUG Processing 382/472 atomic regions from SNP 114570 to 115170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:09,039 DEBUG Processing 383/472 atomic regions from SNP 114870 to 115470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:09,232 DEBUG Processing 384/472 atomic regions from SNP 115170 to 115770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:09,419 DEBUG Processing 385/472 atomic regions from SNP 115470 to 116070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:09,607 DEBUG Processing 386/472 atomic regions from SNP 115770 to 116370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:09,795 DEBUG Processing 387/472 atomic regions from SNP 116070 to 116670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:09,984 DEBUG Processing 388/472 atomic regions from SNP 116370 to 116970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:10,172 DEBUG Processing 389/472 atomic regions from SNP 116670 to 117270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:10,359 DEBUG Processing 390/472 atomic regions from SNP 116970 to 117570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:10,536 DEBUG Processing 391/472 atomic regions from SNP 117270 to 117870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:10,716 DEBUG Processing 392/472 atomic regions from SNP 117570 to 118170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:10,902 DEBUG Processing 393/472 atomic regions from SNP 117870 to 118470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:11,099 DEBUG Processing 394/472 atomic regions from SNP 118170 to 118770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:11,294 DEBUG Processing 395/472 atomic regions from SNP 118470 to 119070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:11,481 DEBUG Processing 396/472 atomic regions from SNP 118770 to 119370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:11,664 DEBUG Processing 397/472 atomic regions from SNP 119070 to 119670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:11,855 DEBUG Processing 398/472 atomic regions from SNP 119370 to 119970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:12,053 DEBUG Processing 399/472 atomic regions from SNP 119670 to 120270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:12,254 DEBUG Processing 400/472 atomic regions from SNP 119970 to 120570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:12,446 DEBUG Processing 401/472 atomic regions from SNP 120270 to 120870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:12,626 DEBUG Processing 402/472 atomic regions from SNP 120570 to 121170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:12,812 DEBUG Processing 403/472 atomic regions from SNP 120870 to 121470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:13,012 DEBUG Processing 404/472 atomic regions from SNP 121170 to 121770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:13,212 DEBUG Processing 405/472 atomic regions from SNP 121470 to 122070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:13,433 DEBUG Processing 406/472 atomic regions from SNP 121770 to 122370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:13,631 DEBUG Processing 407/472 atomic regions from SNP 122070 to 122670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:13,837 DEBUG Processing 408/472 atomic regions from SNP 122370 to 122970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:14,030 DEBUG Processing 409/472 atomic regions from SNP 122670 to 123270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:14,224 DEBUG Processing 410/472 atomic regions from SNP 122970 to 123570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:14,420 DEBUG Processing 411/472 atomic regions from SNP 123270 to 123870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:14,614 DEBUG Processing 412/472 atomic regions from SNP 123570 to 124170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:14,806 DEBUG Processing 413/472 atomic regions from SNP 123870 to 124470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:14,989 DEBUG Processing 414/472 atomic regions from SNP 124170 to 124770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:15,166 DEBUG Processing 415/472 atomic regions from SNP 124470 to 125070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:15,346 DEBUG Processing 416/472 atomic regions from SNP 124770 to 125370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:15,531 DEBUG Processing 417/472 atomic regions from SNP 125070 to 125670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:15,720 DEBUG Processing 418/472 atomic regions from SNP 125370 to 125970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:15,912 DEBUG Processing 419/472 atomic regions from SNP 125670 to 126270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:16,109 DEBUG Processing 420/472 atomic regions from SNP 125970 to 126570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:16,292 DEBUG Processing 421/472 atomic regions from SNP 126270 to 126870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:16,475 DEBUG Processing 422/472 atomic regions from SNP 126570 to 127170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:16,660 DEBUG Processing 423/472 atomic regions from SNP 126870 to 127470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:16,844 DEBUG Processing 424/472 atomic regions from SNP 127170 to 127770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:17,022 DEBUG Processing 425/472 atomic regions from SNP 127470 to 128070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:17,204 DEBUG Processing 426/472 atomic regions from SNP 127770 to 128370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:17,384 DEBUG Processing 427/472 atomic regions from SNP 128070 to 128670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:17,559 DEBUG Processing 428/472 atomic regions from SNP 128370 to 128970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:17,740 DEBUG Processing 429/472 atomic regions from SNP 128670 to 129270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:17,926 DEBUG Processing 430/472 atomic regions from SNP 128970 to 129570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:18,105 DEBUG Processing 431/472 atomic regions from SNP 129270 to 129870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:18,279 DEBUG Processing 432/472 atomic regions from SNP 129570 to 130170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:18,462 DEBUG Processing 433/472 atomic regions from SNP 129870 to 130470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:18,651 DEBUG Processing 434/472 atomic regions from SNP 130170 to 130770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:18,838 DEBUG Processing 435/472 atomic regions from SNP 130470 to 131070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:19,018 DEBUG Processing 436/472 atomic regions from SNP 130770 to 131370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:19,205 DEBUG Processing 437/472 atomic regions from SNP 131070 to 131670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:19,392 DEBUG Processing 438/472 atomic regions from SNP 131370 to 131970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:19,575 DEBUG Processing 439/472 atomic regions from SNP 131670 to 132270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:19,755 DEBUG Processing 440/472 atomic regions from SNP 131970 to 132570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:19,939 DEBUG Processing 441/472 atomic regions from SNP 132270 to 132870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:20,124 DEBUG Processing 442/472 atomic regions from SNP 132570 to 133170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:20,300 DEBUG Processing 443/472 atomic regions from SNP 132870 to 133470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:20,474 DEBUG Processing 444/472 atomic regions from SNP 133170 to 133770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:20,664 DEBUG Processing 445/472 atomic regions from SNP 133470 to 134070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:20,858 DEBUG Processing 446/472 atomic regions from SNP 133770 to 134370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:21,046 DEBUG Processing 447/472 atomic regions from SNP 134070 to 134670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:21,231 DEBUG Processing 448/472 atomic regions from SNP 134370 to 134970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:21,415 DEBUG Processing 449/472 atomic regions from SNP 134670 to 135270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:21,610 DEBUG Processing 450/472 atomic regions from SNP 134970 to 135570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:21,803 DEBUG Processing 451/472 atomic regions from SNP 135270 to 135870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:21,991 DEBUG Processing 452/472 atomic regions from SNP 135570 to 136170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:22,176 DEBUG Processing 453/472 atomic regions from SNP 135870 to 136470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:22,361 DEBUG Processing 454/472 atomic regions from SNP 136170 to 136770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:22,551 DEBUG Processing 455/472 atomic regions from SNP 136470 to 137070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:22,744 DEBUG Processing 456/472 atomic regions from SNP 136770 to 137370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:22,934 DEBUG Processing 457/472 atomic regions from SNP 137070 to 137670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:23,117 DEBUG Processing 458/472 atomic regions from SNP 137370 to 137970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:23,294 DEBUG Processing 459/472 atomic regions from SNP 137670 to 138270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:23,478 DEBUG Processing 460/472 atomic regions from SNP 137970 to 138570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:23,667 DEBUG Processing 461/472 atomic regions from SNP 138270 to 138870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:23,861 DEBUG Processing 462/472 atomic regions from SNP 138570 to 139170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:24,049 DEBUG Processing 463/472 atomic regions from SNP 138870 to 139470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:24,234 DEBUG Processing 464/472 atomic regions from SNP 139170 to 139770 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:24,414 DEBUG Processing 465/472 atomic regions from SNP 139470 to 140070 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:24,600 DEBUG Processing 466/472 atomic regions from SNP 139770 to 140370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:24,790 DEBUG Processing 467/472 atomic regions from SNP 140070 to 140670 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:24,979 DEBUG Processing 468/472 atomic regions from SNP 140370 to 140970 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:25,159 DEBUG Processing 469/472 atomic regions from SNP 140670 to 141270 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:25,336 DEBUG Processing 470/472 atomic regions from SNP 140970 to 141570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:25,518 DEBUG Processing 471/472 atomic regions from SNP 141270 to 141870 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:25,704 DEBUG Processing 472/472 atomic regions from SNP 141570 to 142170 for chr18 (subchromosome 1 of 1). 2025-01-31 09:51:25,827 DEBUG Unique SNPs positions in subchromosome 1: 142171 2025-01-31 09:51:26,267 DEBUG Subchromosome time: 107.91970629896969, subchromosome SNPs: 142171 2025-01-31 09:51:26,267 DEBUG Estimated BADs: [0.79, 2.36, 0.79, 3.15, 0.79, 1.57, 0.79] SNP counts: [48882, 6936, 35709, 2161, 20497, 8232, 19754] SNP IDs counts: [48882, 6936, 35709, 2161, 20497, 8232, 19754] Critical gap: 533321bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 34.41Mbp, 38.25Mbp, 60.48Mbp, 61.61Mbp, 73.57Mbp, 78.12Mbp, 90.70Mbp] 2025-01-31 09:51:26,268 DEBUG chr18 time: 107.92018929193728 s 2025-01-31 09:51:26,353 DEBUG chr18: Fitting background model for 7 segments 2025-01-31 09:51:31,129 DEBUG Results of fit_background_model emitted. 2025-01-31 09:51:31,460 INFO Signal to noise fit: SPOT=0.36±0.10 2025-01-31 09:51:31,468 INFO Final SPOT score: 0.36±0.10. Refitted 0 segments. 2025-01-31 09:51:31,551 INFO Estimating per-bp parameters of background model 2025-01-31 09:51:31,566 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:51:31,566 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 09:51:38,573 DEBUG chrX:3055000-7552751: Successfully fit background model for 1,988,851 bp. Use segment r for 17,446 bp 2025-01-31 09:51:38,628 DEBUG chrX:7552751-7906001: Successfully fit background model for 345,740 bp. Use segment r for 0 bp 2025-01-31 09:51:39,090 DEBUG chrX:7906001-11985751: Successfully fit background model for 3,482,703 bp. Use segment r for 0 bp 2025-01-31 09:51:39,765 DEBUG chr2:3051000-18019251: Successfully fit background model for 13,696,595 bp. Use segment r for 0 bp 2025-01-31 09:51:40,584 DEBUG chr3:3000000-19147751: Successfully fit background model for 13,794,812 bp. Use segment r for 40,336 bp 2025-01-31 09:51:40,639 DEBUG chr2:18019251-24916751: Successfully fit background model for 6,147,568 bp. Use segment r for 0 bp 2025-01-31 09:51:40,709 DEBUG chr5:3003500-20871251: Successfully fit background model for 14,397,687 bp. Use segment r for 78,996 bp 2025-01-31 09:51:41,939 DEBUG chrX:11985751-26910501: Successfully fit background model for 11,113,472 bp. Use segment r for 32,893 bp 2025-01-31 09:51:42,185 DEBUG chr2:24916751-36285251: Successfully fit background model for 11,047,490 bp. Use segment r for 0 bp 2025-01-31 09:51:42,506 DEBUG chrX:31132500-34577501: Successfully fit background model for 188,235 bp. Use segment r for 27,951 bp 2025-01-31 09:51:42,749 DEBUG chr2:36285251-39698751: Successfully fit background model for 3,069,810 bp. Use segment r for 1,519 bp 2025-01-31 09:51:43,393 DEBUG chr2:39698751-43708751: Successfully fit background model for 3,657,662 bp. Use segment r for 7,753 bp 2025-01-31 09:51:43,554 DEBUG chr1:3000500-33584251: Successfully fit background model for 27,176,934 bp. Use segment r for 35,950 bp 2025-01-31 09:51:43,718 DEBUG chr4:3050000-40134751: Successfully fit background model for 32,827,050 bp. Use segment r for 70,106 bp 2025-01-31 09:51:43,984 DEBUG chr4:40134751-41855501: Successfully fit background model for 1,561,554 bp. Use segment r for 0 bp 2025-01-31 09:51:44,033 DEBUG chr5:20871251-36692251: Successfully fit background model for 14,666,823 bp. Use segment r for 173 bp 2025-01-31 09:51:44,168 DEBUG chr1:33584251-38745751: Successfully fit background model for 4,918,487 bp. Use segment r for 0 bp 2025-01-31 09:51:44,680 DEBUG chr4:42724000-48715251: Successfully fit background model for 5,700,798 bp. Use segment r for 0 bp 2025-01-31 09:51:44,740 DEBUG chr1:38745751-44098751: Successfully fit background model for 5,130,173 bp. Use segment r for 0 bp 2025-01-31 09:51:45,069 DEBUG chr3:19147751-40949251: Successfully fit background model for 19,647,338 bp. Use segment r for 49,504 bp 2025-01-31 09:51:45,071 DEBUG chr4:48715251-52515251: Successfully fit background model for 3,339,541 bp. Use segment r for 0 bp 2025-01-31 09:51:45,248 DEBUG chrX:35471500-50579751: Successfully fit background model for 12,673,857 bp. Use segment r for 5,587 bp 2025-01-31 09:51:45,284 DEBUG chrX:50579751-50635751: Successfully fit background model for 50,847 bp. Use segment r for 0 bp 2025-01-31 09:51:45,685 DEBUG chrX:50635751-54261001: Successfully fit background model for 3,212,687 bp. Use segment r for 0 bp 2025-01-31 09:51:45,966 DEBUG chr1:44098751-52097751: Successfully fit background model for 6,962,106 bp. Use segment r for 2,588 bp 2025-01-31 09:51:46,912 DEBUG chr3:40949251-51154251: Successfully fit background model for 8,704,373 bp. Use segment r for 372,002 bp 2025-01-31 09:51:46,946 DEBUG chr4:52515251-62495251: Successfully fit background model for 7,739,326 bp. Use segment r for 10,382 bp 2025-01-31 09:51:46,993 DEBUG chr3:51154251-51648501: Successfully fit background model for 473,559 bp. Use segment r for 0 bp 2025-01-31 09:51:47,103 DEBUG chr1:52097751-62739751: Successfully fit background model for 9,881,272 bp. Use segment r for 0 bp 2025-01-31 09:51:47,243 DEBUG chr2:43708751-62967751: Successfully fit background model for 17,667,099 bp. Use segment r for 53,800 bp 2025-01-31 09:51:47,362 DEBUG chr1:62739751-65177751: Successfully fit background model for 2,288,868 bp. Use segment r for 0 bp 2025-01-31 09:51:48,272 DEBUG chr1:65177751-74232251: Successfully fit background model for 8,403,074 bp. Use segment r for 0 bp 2025-01-31 09:51:48,404 DEBUG chr1:74232251-75336251: Successfully fit background model for 1,008,290 bp. Use segment r for 0 bp 2025-01-31 09:51:49,041 DEBUG chrX:55283500-73466251: Successfully fit background model for 15,320,188 bp. Use segment r for 4,857 bp 2025-01-31 09:51:49,216 DEBUG chrX:73466251-74248751: Successfully fit background model for 758,295 bp. Use segment r for 0 bp 2025-01-31 09:51:50,574 DEBUG chr1:75336251-86046751: Successfully fit background model for 9,445,274 bp. Use segment r for 681 bp 2025-01-31 09:51:50,717 DEBUG chr3:51648501-69120251: Successfully fit background model for 15,820,431 bp. Use segment r for 848 bp 2025-01-31 09:51:51,373 DEBUG chr1:86046751-93845251: Successfully fit background model for 7,487,125 bp. Use segment r for 0 bp 2025-01-31 09:51:54,188 DEBUG chr3:69120251-84135251: Successfully fit background model for 13,519,861 bp. Use segment r for 36,367 bp 2025-01-31 09:51:54,608 DEBUG chr3:84135251-87728251: Successfully fit background model for 3,419,593 bp. Use segment r for 0 bp 2025-01-31 09:51:54,906 DEBUG chr3:87728251-90433501: Successfully fit background model for 2,569,605 bp. Use segment r for 0 bp 2025-01-31 09:51:54,928 DEBUG chrX:74248751-101253251: Successfully fit background model for 22,777,081 bp. Use segment r for 100,820 bp 2025-01-31 09:51:55,067 DEBUG chr2:62967751-96906001: Successfully fit background model for 31,157,189 bp. Use segment r for 39 bp 2025-01-31 09:51:55,479 DEBUG chrX:101253251-105970751: Successfully fit background model for 4,161,850 bp. Use segment r for 0 bp 2025-01-31 09:51:55,573 DEBUG chr3:90433501-94425251: Successfully fit background model for 3,068,637 bp. Use segment r for 12,096 bp 2025-01-31 09:51:55,661 DEBUG chr2:96906001-100256251: Successfully fit background model for 2,814,374 bp. Use segment r for 89,964 bp 2025-01-31 09:51:55,812 DEBUG chr3:94425251-96628751: Successfully fit background model for 2,004,381 bp. Use segment r for 0 bp 2025-01-31 09:51:56,129 DEBUG chr4:62495251-107065751: Successfully fit background model for 40,376,786 bp. Use segment r for 36,436 bp 2025-01-31 09:51:56,198 DEBUG chrX:105970751-110810251: Successfully fit background model for 4,136,990 bp. Use segment r for 11,546 bp 2025-01-31 09:51:56,458 DEBUG chr1:93845251-118310251: Successfully fit background model for 21,377,051 bp. Use segment r for 32,960 bp 2025-01-31 09:51:57,620 DEBUG chr3:96628751-110515751: Successfully fit background model for 12,890,142 bp. Use segment r for 0 bp 2025-01-31 09:51:57,849 DEBUG chr4:107065751-115728751: Successfully fit background model for 7,661,120 bp. Use segment r for 123,282 bp 2025-01-31 09:51:58,208 DEBUG chr3:110515751-114152251: Successfully fit background model for 2,942,495 bp. Use segment r for 22,546 bp 2025-01-31 09:51:58,234 DEBUG chr4:115728751-119232251: Successfully fit background model for 3,343,565 bp. Use segment r for 0 bp 2025-01-31 09:51:58,538 DEBUG chr5:36692251-103563251: Successfully fit background model for 59,022,936 bp. Use segment r for 199,509 bp 2025-01-31 09:51:58,680 DEBUG chrX:110810251-124247501: Successfully fit background model for 10,467,992 bp. Use segment r for 96,685 bp 2025-01-31 09:51:58,693 DEBUG chr1:118310251-130712751: Successfully fit background model for 11,601,015 bp. Use segment r for 699 bp 2025-01-31 09:51:59,273 DEBUG chr1:130712751-136413251: Successfully fit background model for 5,546,166 bp. Use segment r for 0 bp 2025-01-31 09:51:59,325 DEBUG chr2:100256251-118655751: Successfully fit background model for 16,728,729 bp. Use segment r for 17,013 bp 2025-01-31 09:51:59,649 DEBUG chr2:118655751-121406751: Successfully fit background model for 2,663,714 bp. Use segment r for 0 bp 2025-01-31 09:51:59,957 DEBUG chrX:126025000-134129251: Successfully fit background model for 7,003,071 bp. Use segment r for 1,048 bp 2025-01-31 09:52:00,373 DEBUG chr2:121406751-127200751: Successfully fit background model for 5,378,239 bp. Use segment r for 0 bp 2025-01-31 09:52:00,582 DEBUG chr4:119232251-131710251: Successfully fit background model for 11,135,387 bp. Use segment r for 7,670 bp 2025-01-31 09:52:00,640 DEBUG chr5:103563251-113728751: Successfully fit background model for 9,384,355 bp. Use segment r for 76 bp 2025-01-31 09:52:00,784 DEBUG chr2:127200751-131134251: Successfully fit background model for 3,786,206 bp. Use segment r for 0 bp 2025-01-31 09:52:00,858 DEBUG chr5:113728751-115555251: Successfully fit background model for 1,776,908 bp. Use segment r for 0 bp 2025-01-31 09:52:01,390 DEBUG chr5:115555251-120084251: Successfully fit background model for 4,433,996 bp. Use segment r for 0 bp 2025-01-31 09:52:01,802 DEBUG chr4:131710251-141722251: Successfully fit background model for 9,778,046 bp. Use segment r for 0 bp 2025-01-31 09:52:01,907 DEBUG chr1:136413251-151728251: Successfully fit background model for 13,613,785 bp. Use segment r for 7,309 bp 2025-01-31 09:52:01,960 DEBUG chr5:120084251-125354251: Successfully fit background model for 5,048,596 bp. Use segment r for 0 bp 2025-01-31 09:52:02,399 DEBUG chr5:125354251-129724251: Successfully fit background model for 4,178,921 bp. Use segment r for 0 bp 2025-01-31 09:52:02,463 DEBUG chr5:129724251-130142251: Successfully fit background model for 357,997 bp. Use segment r for 0 bp 2025-01-31 09:52:02,817 DEBUG chr4:141722251-148038251: Successfully fit background model for 4,067,663 bp. Use segment r for 13,388 bp 2025-01-31 09:52:02,818 DEBUG chr3:114152251-137048751: Successfully fit background model for 21,228,320 bp. Use segment r for 2,386 bp 2025-01-31 09:52:02,908 DEBUG chr5:130142251-134138251: Successfully fit background model for 3,831,458 bp. Use segment r for 0 bp 2025-01-31 09:52:03,735 DEBUG chr4:148038251-156508116: Successfully fit background model for 8,056,509 bp. Use segment r for 0 bp 2025-01-31 09:52:04,087 DEBUG chr1:151728251-171029251: Successfully fit background model for 18,158,202 bp. Use segment r for 0 bp 2025-01-31 09:52:04,159 DEBUG chr1:171029251-171340751: Successfully fit background model for 285,232 bp. Use segment r for 0 bp 2025-01-31 09:52:04,920 DEBUG chr1:171340751-178303251: Successfully fit background model for 6,311,165 bp. Use segment r for 0 bp 2025-01-31 09:52:05,100 DEBUG chr2:131134251-152329751: Successfully fit background model for 19,471,655 bp. Use segment r for 3,974 bp 2025-01-31 09:52:05,172 DEBUG chr5:134138251-151834684: Successfully fit background model for 16,468,986 bp. Use segment r for 0 bp 2025-01-31 09:52:05,212 DEBUG chr1:178303251-181209751: Successfully fit background model for 2,807,283 bp. Use segment r for 0 bp 2025-01-31 09:52:05,685 DEBUG chr1:181209751-185405251: Successfully fit background model for 3,909,289 bp. Use segment r for 0 bp 2025-01-31 09:52:05,713 DEBUG chr2:152329751-157443251: Successfully fit background model for 4,909,459 bp. Use segment r for 0 bp 2025-01-31 09:52:06,278 DEBUG chr1:185405251-190903751: Successfully fit background model for 5,297,331 bp. Use segment r for 0 bp 2025-01-31 09:52:06,396 DEBUG chr1:190903751-191852251: Successfully fit background model for 918,903 bp. Use segment r for 0 bp 2025-01-31 09:52:06,403 DEBUG chr2:157443251-163209251: Successfully fit background model for 5,519,856 bp. Use segment r for 0 bp 2025-01-31 09:52:06,749 DEBUG chr1:191852251-195471971: Successfully fit background model for 3,256,239 bp. Use segment r for 0 bp 2025-01-31 09:52:06,804 DEBUG chrX:134129251-171031299: Successfully fit background model for 29,635,237 bp. Use segment r for 68,547 bp 2025-01-31 09:52:06,901 DEBUG chr2:163209251-168018251: Successfully fit background model for 4,636,388 bp. Use segment r for 0 bp 2025-01-31 09:52:07,705 DEBUG chr3:137048751-160039680: Successfully fit background model for 20,935,886 bp. Use segment r for 377,144 bp 2025-01-31 09:52:08,381 DEBUG chr2:168018251-175179501: Successfully fit background model for 6,817,157 bp. Use segment r for 546 bp 2025-01-31 09:52:08,884 DEBUG chr2:176700000-179817751: Successfully fit background model for 1,923,863 bp. Use segment r for 3,376 bp 2025-01-31 09:52:09,148 DEBUG chr2:179817751-182113224: Successfully fit background model for 2,105,974 bp. Use segment r for 0 bp 2025-01-31 09:53:41,077 DEBUG chr6:3050000-28249251: Successfully fit background model for 22,300,825 bp. Use segment r for 31,474 bp 2025-01-31 09:53:41,886 DEBUG chr6:28249251-35132751: Successfully fit background model for 6,584,702 bp. Use segment r for 0 bp 2025-01-31 09:53:43,112 DEBUG chr7:3004000-3612751: Successfully fit background model for 460,970 bp. Use segment r for 0 bp 2025-01-31 09:53:43,343 DEBUG chr7:3612751-5100251: Successfully fit background model for 1,164,223 bp. Use segment r for 22,966 bp 2025-01-31 09:53:44,010 DEBUG chr7:5100251-9248001: Successfully fit background model for 1,899,241 bp. Use segment r for 49,813 bp 2025-01-31 09:53:44,454 DEBUG chr7:9956500-12815251: Successfully fit background model for 1,890,232 bp. Use segment r for 23,125 bp 2025-01-31 09:53:44,490 DEBUG chr7:12815251-13064251: Successfully fit background model for 239,593 bp. Use segment r for 0 bp 2025-01-31 09:53:44,968 DEBUG chr7:13064251-15911751: Successfully fit background model for 1,739,375 bp. Use segment r for 22,450 bp 2025-01-31 09:53:45,107 DEBUG chr7:15911751-17081751: Successfully fit background model for 1,134,701 bp. Use segment r for 0 bp 2025-01-31 09:53:45,442 DEBUG chr7:17081751-19001251: Successfully fit background model for 1,363,008 bp. Use segment r for 21,985 bp 2025-01-31 09:53:45,528 DEBUG chr7:19001251-19717751: Successfully fit background model for 702,869 bp. Use segment r for 0 bp 2025-01-31 09:53:45,579 DEBUG chr7:19717751-20073001: Successfully fit background model for 317,839 bp. Use segment r for 0 bp 2025-01-31 09:53:45,835 DEBUG chr7:22793000-24298251: Successfully fit background model for 829,157 bp. Use segment r for 14,780 bp 2025-01-31 09:53:46,923 DEBUG chr7:24298251-31065751: Successfully fit background model for 6,171,553 bp. Use segment r for 53 bp 2025-01-31 09:53:48,747 DEBUG chr6:35132751-70752251: Successfully fit background model for 32,022,034 bp. Use segment r for 26,530 bp 2025-01-31 09:53:48,991 DEBUG chr6:70752251-72432001: Successfully fit background model for 1,621,525 bp. Use segment r for 0 bp 2025-01-31 09:53:49,278 DEBUG chr8:3072000-4679251: Successfully fit background model for 1,411,206 bp. Use segment r for 1,589 bp 2025-01-31 09:53:49,367 DEBUG chr7:31065751-44815251: Successfully fit background model for 10,330,560 bp. Use segment r for 82,034 bp 2025-01-31 09:53:49,482 DEBUG chr7:44815251-45699251: Successfully fit background model for 867,583 bp. Use segment r for 0 bp 2025-01-31 09:53:49,594 DEBUG chr8:4679251-6676251: Successfully fit background model for 1,698,361 bp. Use segment r for 48,983 bp 2025-01-31 09:53:49,725 DEBUG chr7:45699251-47288501: Successfully fit background model for 1,520,220 bp. Use segment r for 5,471 bp 2025-01-31 09:53:50,143 DEBUG chr7:47288501-50125501: Successfully fit background model for 2,512,365 bp. Use segment r for 1,357 bp 2025-01-31 09:53:50,934 DEBUG chr6:72432001-82996251: Successfully fit background model for 9,566,261 bp. Use segment r for 13,442 bp 2025-01-31 09:53:51,796 DEBUG chr6:82996251-90983251: Successfully fit background model for 7,512,999 bp. Use segment r for 0 bp 2025-01-31 09:53:52,573 DEBUG chr7:50125501-63257251: Successfully fit background model for 11,119,353 bp. Use segment r for 40,278 bp 2025-01-31 09:53:53,102 DEBUG chr7:63257251-68391751: Successfully fit background model for 4,844,775 bp. Use segment r for 0 bp 2025-01-31 09:53:53,359 DEBUG chr8:6676251-26974251: Successfully fit background model for 17,453,272 bp. Use segment r for 109,886 bp 2025-01-31 09:53:53,839 DEBUG chr7:68391751-73517251: Successfully fit background model for 4,790,224 bp. Use segment r for 6,821 bp 2025-01-31 09:53:53,904 DEBUG chr10:3101500-40125251: Successfully fit background model for 33,618,548 bp. Use segment r for 40,170 bp 2025-01-31 09:53:54,337 DEBUG chr10:40125251-43515751: Successfully fit background model for 3,254,376 bp. Use segment r for 0 bp 2025-01-31 09:53:55,178 DEBUG chr7:73517251-85397251: Successfully fit background model for 11,112,028 bp. Use segment r for 0 bp 2025-01-31 09:53:55,646 DEBUG chr6:90983251-112928751: Successfully fit background model for 20,403,731 bp. Use segment r for 10,336 bp 2025-01-31 09:53:55,766 DEBUG chr6:112928751-113602751: Successfully fit background model for 660,621 bp. Use segment r for 0 bp 2025-01-31 09:53:56,796 DEBUG chr7:85397251-94991751: Successfully fit background model for 8,697,741 bp. Use segment r for 8,549 bp 2025-01-31 09:53:57,152 DEBUG chr7:94991751-98655251: Successfully fit background model for 3,433,517 bp. Use segment r for 0 bp 2025-01-31 09:53:57,439 DEBUG chr10:43515751-59863251: Successfully fit background model for 14,402,186 bp. Use segment r for 8,161 bp 2025-01-31 09:53:57,473 DEBUG chr7:98655251-101821251: Successfully fit background model for 3,099,604 bp. Use segment r for 0 bp 2025-01-31 09:53:57,801 DEBUG chr10:59863251-63243751: Successfully fit background model for 3,292,035 bp. Use segment r for 0 bp 2025-01-31 09:53:58,482 DEBUG chr6:113602751-128757251: Successfully fit background model for 13,825,612 bp. Use segment r for 585 bp 2025-01-31 09:53:59,654 DEBUG chr8:26974251-60889751: Successfully fit background model for 30,482,195 bp. Use segment r for 24,545 bp 2025-01-31 09:53:59,736 DEBUG chr8:60889751-60993751: Successfully fit background model for 102,608 bp. Use segment r for 0 bp 2025-01-31 09:54:00,224 DEBUG chr10:63243751-75627751: Successfully fit background model for 11,371,654 bp. Use segment r for 91,797 bp 2025-01-31 09:54:00,671 DEBUG chr10:75627751-79633251: Successfully fit background model for 3,713,597 bp. Use segment r for 0 bp 2025-01-31 09:54:00,887 DEBUG chr10:79633251-81610251: Successfully fit background model for 1,943,485 bp. Use segment r for 0 bp 2025-01-31 09:54:01,614 DEBUG chr8:60993751-69789251: Successfully fit background model for 7,826,363 bp. Use segment r for 17,792 bp 2025-01-31 09:54:01,759 DEBUG chr8:69789251-70916751: Successfully fit background model for 1,109,965 bp. Use segment r for 0 bp 2025-01-31 09:54:01,905 DEBUG chr7:101821251-126258751: Successfully fit background model for 22,356,737 bp. Use segment r for 5,120 bp 2025-01-31 09:54:02,034 DEBUG chr8:70916751-72442751: Successfully fit background model for 1,263,641 bp. Use segment r for 16,073 bp 2025-01-31 09:54:02,143 DEBUG chr7:126258751-128231751: Successfully fit background model for 1,898,551 bp. Use segment r for 0 bp 2025-01-31 09:54:02,272 DEBUG chr6:128757251-149736546: Successfully fit background model for 18,932,370 bp. Use segment r for 39,090 bp 2025-01-31 09:54:03,572 DEBUG chr7:128231751-140840751: Successfully fit background model for 12,042,278 bp. Use segment r for 0 bp 2025-01-31 09:54:03,664 DEBUG chr7:140840751-141462251: Successfully fit background model for 607,605 bp. Use segment r for 0 bp 2025-01-31 09:54:04,090 DEBUG chr7:141462251-145441459: Successfully fit background model for 3,706,319 bp. Use segment r for 0 bp 2025-01-31 09:54:04,190 DEBUG chr8:72442751-83588251: Successfully fit background model for 10,107,129 bp. Use segment r for 14,679 bp 2025-01-31 09:54:04,344 DEBUG chr8:83588251-84908501: Successfully fit background model for 1,296,195 bp. Use segment r for 0 bp 2025-01-31 09:54:05,461 DEBUG chr8:84908501-94150501: Successfully fit background model for 8,832,340 bp. Use segment r for 0 bp 2025-01-31 09:54:05,637 DEBUG chr8:94150501-95674251: Successfully fit background model for 1,469,834 bp. Use segment r for 0 bp 2025-01-31 09:54:07,497 DEBUG chr8:95674251-104532251: Successfully fit background model for 8,110,791 bp. Use segment r for 49,772 bp 2025-01-31 09:54:08,096 DEBUG chr14:5838000-19745251: Successfully fit background model for 10,958,528 bp. Use segment r for 31,163 bp 2025-01-31 09:54:08,312 DEBUG chr8:104532251-111850751: Successfully fit background model for 7,013,974 bp. Use segment r for 0 bp 2025-01-31 09:54:08,325 DEBUG chr14:19745251-21719751: Successfully fit background model for 1,910,269 bp. Use segment r for 0 bp 2025-01-31 09:54:09,100 DEBUG chr8:111850751-116885751: Successfully fit background model for 4,606,678 bp. Use segment r for 244,024 bp 2025-01-31 09:54:09,284 DEBUG chr14:21719751-29861751: Successfully fit background model for 7,362,656 bp. Use segment r for 0 bp 2025-01-31 09:54:09,363 DEBUG chr8:116885751-119290251: Successfully fit background model for 2,339,868 bp. Use segment r for 0 bp 2025-01-31 09:54:09,930 DEBUG chr8:119290251-124230251: Successfully fit background model for 4,714,552 bp. Use segment r for 0 bp 2025-01-31 09:54:10,046 DEBUG chr14:29861751-37441251: Successfully fit background model for 7,190,717 bp. Use segment r for 0 bp 2025-01-31 09:54:10,155 DEBUG chr10:81610251-126900251: Successfully fit background model for 41,788,649 bp. Use segment r for 23,401 bp 2025-01-31 09:54:10,427 DEBUG chr10:126900251-128565251: Successfully fit background model for 1,616,539 bp. Use segment r for 0 bp 2025-01-31 09:54:10,482 DEBUG chr8:124230251-129401213: Successfully fit background model for 4,803,534 bp. Use segment r for 0 bp 2025-01-31 09:54:10,671 DEBUG chr10:128565251-130694993: Successfully fit background model for 1,733,041 bp. Use segment r for 0 bp 2025-01-31 09:54:11,282 DEBUG chr9:3002500-13293751: Successfully fit background model for 8,971,622 bp. Use segment r for 37,762 bp 2025-01-31 09:54:11,390 DEBUG chr14:37441251-45304751: Successfully fit background model for 4,571,404 bp. Use segment r for 55,379 bp 2025-01-31 09:54:11,460 DEBUG chr9:13293751-15028751: Successfully fit background model for 1,565,282 bp. Use segment r for 0 bp 2025-01-31 09:54:12,035 DEBUG chr9:15028751-20632751: Successfully fit background model for 4,971,444 bp. Use segment r for 0 bp 2025-01-31 09:54:12,183 DEBUG chr9:20632751-22054251: Successfully fit background model for 1,376,929 bp. Use segment r for 0 bp 2025-01-31 09:54:13,003 DEBUG chr14:45304751-54491001: Successfully fit background model for 7,766,414 bp. Use segment r for 3,502 bp 2025-01-31 09:54:13,149 DEBUG chr14:54491001-55618751: Successfully fit background model for 1,077,134 bp. Use segment r for 0 bp 2025-01-31 09:54:15,331 DEBUG chr9:22054251-40757251: Successfully fit background model for 17,332,121 bp. Use segment r for 34,911 bp 2025-01-31 09:54:15,655 DEBUG chr9:40757251-44067001: Successfully fit background model for 3,248,368 bp. Use segment r for 0 bp 2025-01-31 09:54:15,699 DEBUG chr9:44067001-44378751: Successfully fit background model for 292,082 bp. Use segment r for 0 bp 2025-01-31 09:54:17,273 DEBUG chr9:44378751-57069751: Successfully fit background model for 12,135,248 bp. Use segment r for 0 bp 2025-01-31 09:54:17,981 DEBUG chr14:55618751-80260751: Successfully fit background model for 22,884,052 bp. Use segment r for 75 bp 2025-01-31 09:54:18,375 DEBUG chr9:57069751-66591751: Successfully fit background model for 9,271,775 bp. Use segment r for 0 bp 2025-01-31 09:54:20,497 DEBUG chr14:80260751-94938751: Successfully fit background model for 13,189,639 bp. Use segment r for 67,019 bp 2025-01-31 09:54:25,000 DEBUG chr14:94938751-121761751: Successfully fit background model for 24,564,317 bp. Use segment r for 38,132 bp 2025-01-31 09:54:25,379 DEBUG chr14:121761751-124902244: Successfully fit background model for 2,660,599 bp. Use segment r for 0 bp 2025-01-31 09:54:25,642 DEBUG chr9:66591751-106156251: Successfully fit background model for 36,473,637 bp. Use segment r for 5,029 bp 2025-01-31 09:54:26,346 DEBUG chr9:106156251-110530251: Successfully fit background model for 4,022,005 bp. Use segment r for 65 bp 2025-01-31 09:54:27,399 DEBUG chr9:110530251-119320751: Successfully fit background model for 8,312,953 bp. Use segment r for 0 bp 2025-01-31 09:54:28,134 DEBUG chr9:119320751-124595110: Successfully fit background model for 4,731,653 bp. Use segment r for 0 bp 2025-01-31 09:55:26,776 DEBUG chr11:3101000-6791251: Successfully fit background model for 3,508,400 bp. Use segment r for 4,918 bp 2025-01-31 09:55:28,830 DEBUG chr11:6791251-18525251: Successfully fit background model for 10,494,161 bp. Use segment r for 17,085 bp 2025-01-31 09:55:29,571 DEBUG chr11:18525251-23254251: Successfully fit background model for 4,423,698 bp. Use segment r for 10,908 bp 2025-01-31 09:55:30,101 DEBUG chr12:3000500-5648251: Successfully fit background model for 2,431,961 bp. Use segment r for 0 bp 2025-01-31 09:55:30,313 DEBUG chr15:3050500-5088251: Successfully fit background model for 1,734,531 bp. Use segment r for 0 bp 2025-01-31 09:55:31,476 DEBUG chr15:5088251-13853001: Successfully fit background model for 8,081,912 bp. Use segment r for 0 bp 2025-01-31 09:55:31,870 DEBUG chr13:3002000-21159751: Successfully fit background model for 15,897,105 bp. Use segment r for 28,219 bp 2025-01-31 09:55:31,995 DEBUG chr13:21159751-22052251: Successfully fit background model for 799,365 bp. Use segment r for 0 bp 2025-01-31 09:55:32,123 DEBUG chr13:22052251-23263251: Successfully fit background model for 909,404 bp. Use segment r for 0 bp 2025-01-31 09:55:32,164 DEBUG chr13:23263251-23580751: Successfully fit background model for 294,296 bp. Use segment r for 0 bp 2025-01-31 09:55:32,396 DEBUG chr13:23580751-25815251: Successfully fit background model for 2,088,942 bp. Use segment r for 0 bp 2025-01-31 09:55:32,527 DEBUG chr13:25815251-26640251: Successfully fit background model for 751,372 bp. Use segment r for 2,117 bp 2025-01-31 09:55:33,887 DEBUG chr15:13853001-33623751: Successfully fit background model for 17,820,351 bp. Use segment r for 0 bp 2025-01-31 09:55:34,029 DEBUG chr16:3101000-5620251: Successfully fit background model for 2,079,998 bp. Use segment r for 2,388 bp 2025-01-31 09:55:34,211 DEBUG chr11:23254251-48773251: Successfully fit background model for 23,588,909 bp. Use segment r for 11,321 bp 2025-01-31 09:55:34,256 DEBUG chr16:5620251-7569251: Successfully fit background model for 1,905,996 bp. Use segment r for 0 bp 2025-01-31 09:55:34,261 DEBUG chr11:48773251-48875751: Successfully fit background model for 99,533 bp. Use segment r for 0 bp 2025-01-31 09:55:34,551 DEBUG chr13:26640251-37843751: Successfully fit background model for 10,170,373 bp. Use segment r for 6,298 bp 2025-01-31 09:55:34,662 DEBUG chr13:37843751-38671251: Successfully fit background model for 810,526 bp. Use segment r for 0 bp 2025-01-31 09:55:36,285 DEBUG chr11:48875751-58301251: Successfully fit background model for 8,863,681 bp. Use segment r for 370 bp 2025-01-31 09:55:36,454 DEBUG chr15:33623751-45763751: Successfully fit background model for 11,022,185 bp. Use segment r for 7,493 bp 2025-01-31 09:55:36,773 DEBUG chr16:7569251-24443751: Successfully fit background model for 15,633,478 bp. Use segment r for 0 bp 2025-01-31 09:55:36,828 DEBUG chr13:38671251-54445251: Successfully fit background model for 14,765,209 bp. Use segment r for 0 bp 2025-01-31 09:55:36,841 DEBUG chr11:58301251-62454251: Successfully fit background model for 3,926,418 bp. Use segment r for 0 bp 2025-01-31 09:55:37,137 DEBUG chr15:45763751-49673251: Successfully fit background model for 3,463,764 bp. Use segment r for 31,934 bp 2025-01-31 09:55:37,358 DEBUG chr13:54445251-59660251: Successfully fit background model for 5,067,531 bp. Use segment r for 0 bp 2025-01-31 09:55:37,483 DEBUG chr11:62454251-68965751: Successfully fit background model for 6,283,098 bp. Use segment r for 0 bp 2025-01-31 09:55:37,511 DEBUG chr16:24443751-29151251: Successfully fit background model for 4,388,135 bp. Use segment r for 158 bp 2025-01-31 09:55:37,664 DEBUG chr11:68965751-70645251: Successfully fit background model for 1,640,045 bp. Use segment r for 0 bp 2025-01-31 09:55:38,137 DEBUG chr11:70645251-74825251: Successfully fit background model for 3,843,365 bp. Use segment r for 0 bp 2025-01-31 09:55:38,639 DEBUG chr11:74825251-79621251: Successfully fit background model for 4,662,489 bp. Use segment r for 0 bp 2025-01-31 09:55:38,886 DEBUG chr16:29151251-39213001: Successfully fit background model for 9,610,498 bp. Use segment r for 0 bp 2025-01-31 09:55:39,587 DEBUG chr12:5648251-55299751: Successfully fit background model for 41,409,389 bp. Use segment r for 242,469 bp 2025-01-31 09:55:39,940 DEBUG chr11:79621251-91448251: Successfully fit background model for 11,318,414 bp. Use segment r for 0 bp 2025-01-31 09:55:40,339 DEBUG chr11:91448251-94208751: Successfully fit background model for 2,592,239 bp. Use segment r for 1,279 bp 2025-01-31 09:55:40,696 DEBUG chr13:59660251-78162751: Successfully fit background model for 15,190,051 bp. Use segment r for 116,871 bp 2025-01-31 09:55:40,729 DEBUG chr13:78162751-78214251: Successfully fit background model for 51,397 bp. Use segment r for 0 bp 2025-01-31 09:55:41,017 DEBUG chr13:78214251-80854251: Successfully fit background model for 2,368,538 bp. Use segment r for 0 bp 2025-01-31 09:55:41,300 DEBUG chr13:80854251-83738251: Successfully fit background model for 2,671,932 bp. Use segment r for 0 bp 2025-01-31 09:55:41,736 DEBUG chr13:83738251-88142751: Successfully fit background model for 3,829,176 bp. Use segment r for 0 bp 2025-01-31 09:55:41,755 DEBUG chr11:94208751-106770251: Successfully fit background model for 12,158,803 bp. Use segment r for 0 bp 2025-01-31 09:55:41,798 DEBUG chr15:49673251-73059751: Successfully fit background model for 21,466,629 bp. Use segment r for 24,352 bp 2025-01-31 09:55:42,030 DEBUG chr12:55299751-69156751: Successfully fit background model for 12,404,266 bp. Use segment r for 42,442 bp 2025-01-31 09:55:42,145 DEBUG chr15:73059751-75882251: Successfully fit background model for 2,645,705 bp. Use segment r for 0 bp 2025-01-31 09:55:42,186 DEBUG chr11:106770251-111197751: Successfully fit background model for 4,255,963 bp. Use segment r for 0 bp 2025-01-31 09:55:42,741 DEBUG chr11:111197751-115153751: Successfully fit background model for 3,809,808 bp. Use segment r for 1,395 bp 2025-01-31 09:55:42,752 DEBUG chr13:88142751-96925751: Successfully fit background model for 8,246,874 bp. Use segment r for 0 bp 2025-01-31 09:55:43,109 DEBUG chr13:96925751-100647251: Successfully fit background model for 3,490,401 bp. Use segment r for 0 bp 2025-01-31 09:55:43,233 DEBUG chr15:75882251-84665751: Successfully fit background model for 8,373,195 bp. Use segment r for 0 bp 2025-01-31 09:55:43,430 DEBUG chr11:115153751-122082543: Successfully fit background model for 6,613,205 bp. Use segment r for 0 bp 2025-01-31 09:55:43,582 DEBUG chr17:3002000-19044251: Successfully fit background model for 13,485,296 bp. Use segment r for 11,500 bp 2025-01-31 09:55:43,602 DEBUG chr12:69156751-83308751: Successfully fit background model for 13,392,255 bp. Use segment r for 0 bp 2025-01-31 09:55:43,971 DEBUG chr12:83308751-87103751: Successfully fit background model for 3,699,873 bp. Use segment r for 0 bp 2025-01-31 09:55:44,303 DEBUG chr17:19044251-23531251: Successfully fit background model for 3,642,787 bp. Use segment r for 20,963 bp 2025-01-31 09:55:44,935 DEBUG chr15:84665751-98502251: Successfully fit background model for 13,186,655 bp. Use segment r for 0 bp 2025-01-31 09:55:45,444 DEBUG chr15:98502251-103362751: Successfully fit background model for 4,706,964 bp. Use segment r for 0 bp 2025-01-31 09:55:45,540 DEBUG chr15:103362751-104043685: Successfully fit background model for 434,099 bp. Use segment r for 0 bp 2025-01-31 09:55:45,879 DEBUG chr12:87103751-99274251: Successfully fit background model for 10,749,452 bp. Use segment r for 16,013 bp 2025-01-31 09:55:45,993 DEBUG chr17:23531251-37069751: Successfully fit background model for 12,739,834 bp. Use segment r for 0 bp 2025-01-31 09:55:46,524 DEBUG chr17:37069751-40398001: Successfully fit background model for 2,777,507 bp. Use segment r for 49,133 bp 2025-01-31 09:55:46,550 DEBUG chr13:100647251-120421639: Successfully fit background model for 17,881,050 bp. Use segment r for 971 bp 2025-01-31 09:55:46,699 DEBUG chr12:99274251-105051251: Successfully fit background model for 5,398,624 bp. Use segment r for 11,910 bp 2025-01-31 09:55:47,082 DEBUG chr17:40398001-45551251: Successfully fit background model for 4,700,606 bp. Use segment r for 0 bp 2025-01-31 09:55:47,212 DEBUG chr12:105051251-110398251: Successfully fit background model for 5,167,285 bp. Use segment r for 0 bp 2025-01-31 09:55:47,507 DEBUG chr17:45551251-49557751: Successfully fit background model for 3,890,825 bp. Use segment r for 0 bp 2025-01-31 09:55:47,522 DEBUG chr12:110398251-113231251: Successfully fit background model for 2,752,138 bp. Use segment r for 0 bp 2025-01-31 09:55:48,246 DEBUG chr12:113231251-120129022: Successfully fit background model for 5,969,961 bp. Use segment r for 0 bp 2025-01-31 09:55:48,322 DEBUG chr16:39213001-87431751: Successfully fit background model for 43,660,873 bp. Use segment r for 60,872 bp 2025-01-31 09:55:48,499 DEBUG chr17:49557751-55931251: Successfully fit background model for 5,719,903 bp. Use segment r for 33,167 bp 2025-01-31 09:55:48,654 DEBUG chr16:87431751-89845251: Successfully fit background model for 2,256,015 bp. Use segment r for 0 bp 2025-01-31 09:55:48,672 DEBUG chr17:55931251-57346001: Successfully fit background model for 1,386,543 bp. Use segment r for 0 bp 2025-01-31 09:55:49,190 DEBUG chr17:57346001-62060251: Successfully fit background model for 4,224,470 bp. Use segment r for 0 bp 2025-01-31 09:55:49,190 DEBUG chr16:89845251-94515751: Successfully fit background model for 4,526,608 bp. Use segment r for 0 bp 2025-01-31 09:55:49,567 DEBUG chr16:94515751-98207768: Successfully fit background model for 3,435,479 bp. Use segment r for 0 bp 2025-01-31 09:55:56,986 DEBUG chr17:62060251-89767751: Successfully fit background model for 26,093,713 bp. Use segment r for 4,223 bp 2025-01-31 09:55:57,748 DEBUG chr17:89767751-94987271: Successfully fit background model for 4,568,704 bp. Use segment r for 52,722 bp 2025-01-31 09:56:47,344 DEBUG chr19:3080000-7621251: Successfully fit background model for 4,237,014 bp. Use segment r for 0 bp 2025-01-31 09:56:47,433 DEBUG chr19:7621251-8283751: Successfully fit background model for 491,022 bp. Use segment r for 0 bp 2025-01-31 09:56:47,748 DEBUG chr19:8283751-10994251: Successfully fit background model for 2,283,213 bp. Use segment r for 0 bp 2025-01-31 09:56:49,935 DEBUG chr19:10994251-22657751: Successfully fit background model for 10,787,500 bp. Use segment r for 6,129 bp 2025-01-31 09:56:50,205 DEBUG chr19:22657751-25168751: Successfully fit background model for 2,423,872 bp. Use segment r for 0 bp 2025-01-31 09:56:50,442 DEBUG chr19:25168751-27467751: Successfully fit background model for 2,173,586 bp. Use segment r for 0 bp 2025-01-31 09:56:52,205 DEBUG chr18:3002000-34407251: Successfully fit background model for 28,708,288 bp. Use segment r for 8,293 bp 2025-01-31 09:56:52,870 DEBUG chr18:34407251-38247751: Successfully fit background model for 3,646,890 bp. Use segment r for 1,667 bp 2025-01-31 09:56:53,188 DEBUG chr19:27467751-41829251: Successfully fit background model for 13,322,497 bp. Use segment r for 1,864 bp 2025-01-31 09:56:53,836 DEBUG chr19:41829251-48009751: Successfully fit background model for 5,972,958 bp. Use segment r for 0 bp 2025-01-31 09:56:54,356 DEBUG chr19:48009751-53247751: Successfully fit background model for 4,877,472 bp. Use segment r for 0 bp 2025-01-31 09:56:55,515 DEBUG chr19:53247751-61431566: Successfully fit background model for 7,769,610 bp. Use segment r for 0 bp 2025-01-31 09:56:55,980 DEBUG chr18:38247751-60476751: Successfully fit background model for 20,601,728 bp. Use segment r for 0 bp 2025-01-31 09:56:56,144 DEBUG chr18:60476751-61610251: Successfully fit background model for 1,110,693 bp. Use segment r for 0 bp 2025-01-31 09:56:58,894 DEBUG chr18:61610251-73571251: Successfully fit background model for 11,272,960 bp. Use segment r for 20,536 bp 2025-01-31 09:56:59,385 DEBUG chr18:73571251-78121251: Successfully fit background model for 4,277,190 bp. Use segment r for 0 bp 2025-01-31 09:57:01,605 DEBUG chr18:78121251-90702639: Successfully fit background model for 11,318,102 bp. Use segment r for 12,742 bp 2025-01-31 09:58:02,853 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 09:58:02,854 INFO Calculating per-bp p-values 2025-01-31 09:58:02,855 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 09:58:02,950 DEBUG chr1: Calculating p-values 2025-01-31 09:58:02,956 DEBUG chr4: Calculating p-values 2025-01-31 09:58:02,957 DEBUG chr5: Calculating p-values 2025-01-31 09:58:02,957 DEBUG chrX: Calculating p-values 2025-01-31 09:58:02,957 DEBUG chr2: Calculating p-values 2025-01-31 09:58:02,958 DEBUG chr3: Calculating p-values 2025-01-31 09:58:24,896 DEBUG Saving p-values for chr5 2025-01-31 09:58:25,591 DEBUG Saving p-values for chr4 2025-01-31 09:58:25,760 DEBUG Saving p-values for chr3 2025-01-31 09:58:26,641 DEBUG Saving p-values for chrX 2025-01-31 09:58:29,077 DEBUG Saving p-values for chr2 2025-01-31 09:58:30,524 DEBUG Saving p-values for chr1 2025-01-31 09:58:48,874 DEBUG chr6: Calculating p-values 2025-01-31 09:58:50,488 DEBUG chr7: Calculating p-values 2025-01-31 09:58:50,937 DEBUG chr10: Calculating p-values 2025-01-31 09:58:53,478 DEBUG chr8: Calculating p-values 2025-01-31 09:59:00,632 DEBUG chr14: Calculating p-values 2025-01-31 09:59:03,296 DEBUG chr9: Calculating p-values 2025-01-31 09:59:08,879 DEBUG Saving p-values for chr10 2025-01-31 09:59:09,385 DEBUG Saving p-values for chr6 2025-01-31 09:59:11,523 DEBUG Saving p-values for chr7 2025-01-31 09:59:12,327 DEBUG Saving p-values for chr8 2025-01-31 09:59:18,962 DEBUG Saving p-values for chr14 2025-01-31 09:59:20,628 DEBUG Saving p-values for chr9 2025-01-31 09:59:30,356 DEBUG chr11: Calculating p-values 2025-01-31 09:59:32,117 DEBUG chr13: Calculating p-values 2025-01-31 09:59:34,420 DEBUG chr12: Calculating p-values 2025-01-31 09:59:35,500 DEBUG chr15: Calculating p-values 2025-01-31 09:59:37,404 DEBUG chr16: Calculating p-values 2025-01-31 09:59:43,876 DEBUG chr17: Calculating p-values 2025-01-31 09:59:48,309 DEBUG Saving p-values for chr13 2025-01-31 09:59:48,955 DEBUG Saving p-values for chr11 2025-01-31 09:59:50,281 DEBUG Saving p-values for chr16 2025-01-31 09:59:50,796 DEBUG Saving p-values for chr12 2025-01-31 09:59:50,896 DEBUG Saving p-values for chr15 2025-01-31 09:59:56,313 DEBUG Saving p-values for chr17 2025-01-31 10:00:03,647 DEBUG chrY: Calculating p-values 2025-01-31 10:00:06,188 DEBUG chr18: Calculating p-values 2025-01-31 10:00:06,524 DEBUG chr19: Calculating p-values 2025-01-31 10:00:13,383 DEBUG Saving p-values for chr19 2025-01-31 10:00:14,812 DEBUG Saving p-values for chr18 2025-01-31 10:00:33,105 DEBUG Results of calc_pvals emitted. 2025-01-31 10:00:33,106 INFO Converting threshold values to bigwig 2025-01-31 10:00:33,106 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:00:48,806 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:01:20,060 INFO Converting background quantile values to bigwig 2025-01-31 10:01:20,060 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:01:59,433 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:02:29,067 INFO Calculating per-bp FDRs 2025-01-31 10:02:29,070 DEBUG AG81957: Extracting raw P-values 2025-01-31 10:03:06,201 DEBUG AG81957: Computing FDR 2025-01-31 10:03:18,950 DEBUG AG81957: Saving FDRs to parquet 2025-01-31 10:04:11,270 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:04:11,272 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:04:11,272 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:04:14,257 DEBUG chr4: Calling hotspots 2025-01-31 10:04:14,577 DEBUG chr3: Calling hotspots 2025-01-31 10:04:14,648 DEBUG chr5: Calling hotspots 2025-01-31 10:04:14,741 DEBUG chrX: Calling hotspots 2025-01-31 10:04:14,883 DEBUG chr2: Calling hotspots 2025-01-31 10:04:14,991 DEBUG chr1: Calling hotspots 2025-01-31 10:04:17,934 DEBUG chr4: 2961 hotspots called 2025-01-31 10:04:18,420 DEBUG chr5: 2848 hotspots called 2025-01-31 10:04:18,593 DEBUG chrX: 2565 hotspots called 2025-01-31 10:04:18,796 DEBUG chr3: 2316 hotspots called 2025-01-31 10:04:19,110 DEBUG chr2: 3526 hotspots called 2025-01-31 10:04:19,777 DEBUG chr1: 3010 hotspots called 2025-01-31 10:04:20,525 DEBUG chr6: Calling hotspots 2025-01-31 10:04:20,916 DEBUG chr10: Calling hotspots 2025-01-31 10:04:20,998 DEBUG chr7: Calling hotspots 2025-01-31 10:04:21,080 DEBUG chr8: Calling hotspots 2025-01-31 10:04:21,397 DEBUG chr14: Calling hotspots 2025-01-31 10:04:22,194 DEBUG chr9: Calling hotspots 2025-01-31 10:04:23,811 DEBUG chr6: 2229 hotspots called 2025-01-31 10:04:23,852 DEBUG chr10: 2196 hotspots called 2025-01-31 10:04:24,219 DEBUG chr8: 2244 hotspots called 2025-01-31 10:04:24,270 DEBUG chr7: 2923 hotspots called 2025-01-31 10:04:24,616 DEBUG chr14: 1562 hotspots called 2025-01-31 10:04:25,756 DEBUG chr9: 2494 hotspots called 2025-01-31 10:04:26,007 DEBUG chr11: Calling hotspots 2025-01-31 10:04:26,104 DEBUG chr13: Calling hotspots 2025-01-31 10:04:26,195 DEBUG chr15: Calling hotspots 2025-01-31 10:04:26,385 DEBUG chr12: Calling hotspots 2025-01-31 10:04:26,577 DEBUG chr16: Calling hotspots 2025-01-31 10:04:27,258 DEBUG chr17: Calling hotspots 2025-01-31 10:04:28,835 DEBUG chr16: 1436 hotspots called 2025-01-31 10:04:28,866 DEBUG chr15: 1875 hotspots called 2025-01-31 10:04:28,872 DEBUG chr13: 2130 hotspots called 2025-01-31 10:04:29,139 DEBUG chr11: 3550 hotspots called 2025-01-31 10:04:29,627 DEBUG chr12: 1700 hotspots called 2025-01-31 10:04:29,630 DEBUG chr17: 2007 hotspots called 2025-01-31 10:04:29,811 DEBUG chr19: Calling hotspots 2025-01-31 10:04:29,982 DEBUG chr18: Calling hotspots 2025-01-31 10:04:31,296 DEBUG chr19: 1592 hotspots called 2025-01-31 10:04:31,987 DEBUG chr18: 1241 hotspots called 2025-01-31 10:04:32,165 DEBUG Results of call_hotspots emitted. 2025-01-31 10:04:32,193 INFO There are 46405 hotspots called at FDR=0.05 2025-01-31 10:04:40,475 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:04:40,476 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:04:49,292 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:04:49,853 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:04:49,897 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:04:50,203 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:04:51,199 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:04:51,343 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:04:54,679 DEBUG chr5: 3410 peaks called 2025-01-31 10:04:54,730 DEBUG chr3: 2768 peaks called 2025-01-31 10:04:55,406 DEBUG chr4: 3492 peaks called 2025-01-31 10:04:55,467 DEBUG chrX: 2763 peaks called 2025-01-31 10:04:57,261 DEBUG chr1: 3599 peaks called 2025-01-31 10:04:57,290 DEBUG chr2: 4190 peaks called 2025-01-31 10:05:01,431 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:05:01,794 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:05:01,815 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:05:01,845 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:05:03,028 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:05:03,559 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:05:05,578 DEBUG chr8: 2750 peaks called 2025-01-31 10:05:05,674 DEBUG chr10: 2661 peaks called 2025-01-31 10:05:06,017 DEBUG chr7: 3594 peaks called 2025-01-31 10:05:06,701 DEBUG chr6: 2631 peaks called 2025-01-31 10:05:07,113 DEBUG chr14: 1825 peaks called 2025-01-31 10:05:07,458 DEBUG chr9: 2985 peaks called 2025-01-31 10:05:10,771 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:05:11,296 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:05:11,331 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:05:11,346 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:05:11,507 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:05:11,831 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:05:14,149 DEBUG chr11: 4403 peaks called 2025-01-31 10:05:14,256 DEBUG chr15: 2227 peaks called 2025-01-31 10:05:14,743 DEBUG chr12: 2014 peaks called 2025-01-31 10:05:14,780 DEBUG chr16: 1723 peaks called 2025-01-31 10:05:15,025 DEBUG chr17: 2469 peaks called 2025-01-31 10:05:15,371 DEBUG chr13: 2590 peaks called 2025-01-31 10:05:16,471 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:05:16,743 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:05:18,343 DEBUG chr19: 1955 peaks called 2025-01-31 10:05:19,115 DEBUG chr18: 1466 peaks called 2025-01-31 10:05:19,415 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:05:19,446 INFO There are 55515 peaks called at FDR=0.05 2025-01-31 10:05:20,581 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:05:20,582 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:05:23,874 DEBUG chr3: Calling hotspots 2025-01-31 10:05:24,024 DEBUG chr4: Calling hotspots 2025-01-31 10:05:24,104 DEBUG chr5: Calling hotspots 2025-01-31 10:05:24,310 DEBUG chrX: Calling hotspots 2025-01-31 10:05:24,464 DEBUG chr2: Calling hotspots 2025-01-31 10:05:24,706 DEBUG chr1: Calling hotspots 2025-01-31 10:05:27,653 DEBUG chr3: 1969 hotspots called 2025-01-31 10:05:28,132 DEBUG chr5: 2522 hotspots called 2025-01-31 10:05:28,155 DEBUG chr4: 2570 hotspots called 2025-01-31 10:05:28,858 DEBUG chr2: 3086 hotspots called 2025-01-31 10:05:28,950 DEBUG chrX: 1723 hotspots called 2025-01-31 10:05:29,418 DEBUG chr1: 2534 hotspots called 2025-01-31 10:05:30,188 DEBUG chr6: Calling hotspots 2025-01-31 10:05:30,775 DEBUG chr10: Calling hotspots 2025-01-31 10:05:31,015 DEBUG chr7: Calling hotspots 2025-01-31 10:05:31,206 DEBUG chr8: Calling hotspots 2025-01-31 10:05:31,273 DEBUG chr14: Calling hotspots 2025-01-31 10:05:31,816 DEBUG chr9: Calling hotspots 2025-01-31 10:05:33,535 DEBUG chr6: 1933 hotspots called 2025-01-31 10:05:33,956 DEBUG chr10: 1901 hotspots called 2025-01-31 10:05:34,159 DEBUG chr8: 1985 hotspots called 2025-01-31 10:05:34,328 DEBUG chr14: 1310 hotspots called 2025-01-31 10:05:34,550 DEBUG chr7: 2582 hotspots called 2025-01-31 10:05:34,695 DEBUG chr9: 2211 hotspots called 2025-01-31 10:05:35,763 DEBUG chr11: Calling hotspots 2025-01-31 10:05:36,289 DEBUG chr13: Calling hotspots 2025-01-31 10:05:36,323 DEBUG chr15: Calling hotspots 2025-01-31 10:05:36,342 DEBUG chr12: Calling hotspots 2025-01-31 10:05:36,365 DEBUG chr16: Calling hotspots 2025-01-31 10:05:36,369 DEBUG chr17: Calling hotspots 2025-01-31 10:05:38,591 DEBUG chr16: 1264 hotspots called 2025-01-31 10:05:38,725 DEBUG chr17: 1782 hotspots called 2025-01-31 10:05:38,861 DEBUG chr15: 1633 hotspots called 2025-01-31 10:05:38,896 DEBUG chr11: 3196 hotspots called 2025-01-31 10:05:39,006 DEBUG chr13: 1812 hotspots called 2025-01-31 10:05:39,089 DEBUG chr12: 1440 hotspots called 2025-01-31 10:05:39,481 DEBUG chr19: Calling hotspots 2025-01-31 10:05:39,683 DEBUG chr18: Calling hotspots 2025-01-31 10:05:40,812 DEBUG chr19: 1399 hotspots called 2025-01-31 10:05:41,586 DEBUG chr18: 1072 hotspots called 2025-01-31 10:05:41,758 DEBUG Results of call_hotspots emitted. 2025-01-31 10:05:41,790 INFO There are 39924 hotspots called at FDR=0.01 2025-01-31 10:05:43,662 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:05:43,662 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:05:51,419 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:05:51,609 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:05:51,696 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:05:52,067 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:05:52,647 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:05:52,982 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:05:55,842 DEBUG chr4: 3002 peaks called 2025-01-31 10:05:56,818 DEBUG chr5: 2960 peaks called 2025-01-31 10:05:57,004 DEBUG chr3: 2362 peaks called 2025-01-31 10:05:57,087 DEBUG chrX: 1881 peaks called 2025-01-31 10:05:58,459 DEBUG chr1: 3073 peaks called 2025-01-31 10:05:59,062 DEBUG chr2: 3621 peaks called 2025-01-31 10:06:02,128 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:06:02,849 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:06:02,921 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:06:03,117 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:06:03,724 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:06:04,168 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:06:06,371 DEBUG chr6: 2251 peaks called 2025-01-31 10:06:06,777 DEBUG chr8: 2379 peaks called 2025-01-31 10:06:06,907 DEBUG chr10: 2302 peaks called 2025-01-31 10:06:07,422 DEBUG chr7: 3142 peaks called 2025-01-31 10:06:07,626 DEBUG chr9: 2587 peaks called 2025-01-31 10:06:07,667 DEBUG chr14: 1521 peaks called 2025-01-31 10:06:11,429 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:06:11,873 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:06:11,874 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:06:12,009 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:06:12,197 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:06:12,198 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:06:14,729 DEBUG chr11: 3877 peaks called 2025-01-31 10:06:15,010 DEBUG chr17: 2146 peaks called 2025-01-31 10:06:15,073 DEBUG chr15: 1915 peaks called 2025-01-31 10:06:15,153 DEBUG chr12: 1707 peaks called 2025-01-31 10:06:15,294 DEBUG chr16: 1504 peaks called 2025-01-31 10:06:15,473 DEBUG chr13: 2204 peaks called 2025-01-31 10:06:16,749 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:06:17,124 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:06:18,298 DEBUG chr19: 1691 peaks called 2025-01-31 10:06:19,593 DEBUG chr18: 1250 peaks called 2025-01-31 10:06:19,884 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:06:19,908 INFO There are 47375 peaks called at FDR=0.01 2025-01-31 10:06:20,759 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:06:20,759 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:06:24,027 DEBUG chr5: Calling hotspots 2025-01-31 10:06:24,194 DEBUG chr3: Calling hotspots 2025-01-31 10:06:24,491 DEBUG chr4: Calling hotspots 2025-01-31 10:06:24,531 DEBUG chr2: Calling hotspots 2025-01-31 10:06:24,773 DEBUG chrX: Calling hotspots 2025-01-31 10:06:24,994 DEBUG chr1: Calling hotspots 2025-01-31 10:06:27,754 DEBUG chr3: 1710 hotspots called 2025-01-31 10:06:27,879 DEBUG chr5: 2130 hotspots called 2025-01-31 10:06:28,025 DEBUG chr4: 2181 hotspots called 2025-01-31 10:06:28,989 DEBUG chrX: 1227 hotspots called 2025-01-31 10:06:29,330 DEBUG chr2: 2605 hotspots called 2025-01-31 10:06:29,554 DEBUG chr1: 2146 hotspots called 2025-01-31 10:06:30,250 DEBUG chr10: Calling hotspots 2025-01-31 10:06:30,520 DEBUG chr6: Calling hotspots 2025-01-31 10:06:30,641 DEBUG chr7: Calling hotspots 2025-01-31 10:06:31,342 DEBUG chr8: Calling hotspots 2025-01-31 10:06:31,619 DEBUG chr14: Calling hotspots 2025-01-31 10:06:31,925 DEBUG chr9: Calling hotspots 2025-01-31 10:06:33,131 DEBUG chr10: 1651 hotspots called 2025-01-31 10:06:34,252 DEBUG chr7: 2238 hotspots called 2025-01-31 10:06:34,374 DEBUG chr14: 1082 hotspots called 2025-01-31 10:06:34,385 DEBUG chr6: 1626 hotspots called 2025-01-31 10:06:34,933 DEBUG chr8: 1705 hotspots called 2025-01-31 10:06:35,009 DEBUG chr9: 1865 hotspots called 2025-01-31 10:06:35,200 DEBUG chr11: Calling hotspots 2025-01-31 10:06:36,220 DEBUG chr15: Calling hotspots 2025-01-31 10:06:36,504 DEBUG chr12: Calling hotspots 2025-01-31 10:06:36,523 DEBUG chr13: Calling hotspots 2025-01-31 10:06:36,671 DEBUG chr16: Calling hotspots 2025-01-31 10:06:36,676 DEBUG chr17: Calling hotspots 2025-01-31 10:06:38,101 DEBUG chr11: 2766 hotspots called 2025-01-31 10:06:38,956 DEBUG chr15: 1394 hotspots called 2025-01-31 10:06:38,970 DEBUG chr17: 1564 hotspots called 2025-01-31 10:06:39,140 DEBUG chr16: 1071 hotspots called 2025-01-31 10:06:39,223 DEBUG chr12: 1208 hotspots called 2025-01-31 10:06:39,405 DEBUG chr13: 1529 hotspots called 2025-01-31 10:06:39,473 DEBUG chr18: Calling hotspots 2025-01-31 10:06:39,668 DEBUG chr19: Calling hotspots 2025-01-31 10:06:41,088 DEBUG chr19: 1210 hotspots called 2025-01-31 10:06:41,531 DEBUG chr18: 878 hotspots called 2025-01-31 10:06:41,706 DEBUG Results of call_hotspots emitted. 2025-01-31 10:06:41,729 INFO There are 33786 hotspots called at FDR=0.001 2025-01-31 10:06:43,310 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:06:43,311 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:06:50,549 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:06:50,651 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:06:51,203 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:06:51,297 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:06:51,637 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:06:52,615 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:06:54,841 DEBUG chr4: 2520 peaks called 2025-01-31 10:06:55,286 DEBUG chr5: 2462 peaks called 2025-01-31 10:06:56,119 DEBUG chr3: 2014 peaks called 2025-01-31 10:06:56,611 DEBUG chr2: 3018 peaks called 2025-01-31 10:06:56,616 DEBUG chrX: 1376 peaks called 2025-01-31 10:06:57,884 DEBUG chr1: 2565 peaks called 2025-01-31 10:07:01,545 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:07:02,256 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:07:02,466 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:07:03,233 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:07:03,263 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:07:03,561 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:07:06,646 DEBUG chr6: 1885 peaks called 2025-01-31 10:07:07,109 DEBUG chr10: 1931 peaks called 2025-01-31 10:07:07,565 DEBUG chr9: 2154 peaks called 2025-01-31 10:07:07,761 DEBUG chr7: 2672 peaks called 2025-01-31 10:07:07,851 DEBUG chr14: 1250 peaks called 2025-01-31 10:07:08,217 DEBUG chr8: 2000 peaks called 2025-01-31 10:07:12,137 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:07:12,390 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:07:12,590 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:07:12,597 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:07:12,630 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:07:13,102 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:07:19,058 DEBUG chr17: 1832 peaks called 2025-01-31 10:07:19,165 DEBUG chr16: 1250 peaks called 2025-01-31 10:07:19,222 DEBUG chr11: 3302 peaks called 2025-01-31 10:07:19,461 DEBUG chr15: 1618 peaks called 2025-01-31 10:07:20,006 DEBUG chr13: 1829 peaks called 2025-01-31 10:07:20,779 DEBUG chr12: 1419 peaks called 2025-01-31 10:07:21,440 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:07:22,008 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:07:23,427 DEBUG chr19: 1423 peaks called 2025-01-31 10:07:24,622 DEBUG chr18: 1020 peaks called 2025-01-31 10:07:25,030 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:07:25,056 INFO There are 39540 peaks called at FDR=0.001 2025-01-31 10:07:26,235 INFO Saving density 2025-01-31 10:07:26,236 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:07:42,890 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:07:45,151 DEBUG Converting density to bigwig 2025-01-31 10:08:14,956 INFO Program finished