2025-01-31 09:31:52,964 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:52,968 INFO Extracting cutcounts from bam file 2025-01-31 09:33:12,630 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:33:12,675 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:33:12,678 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:33:12,678 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:33:12,678 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:33:12,679 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:33:12,679 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:33:16,040 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:33:16,147 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:33:16,158 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:33:16,165 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:33:16,309 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:33:16,333 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:33:16,863 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:33:16,934 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:33:16,945 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:33:16,987 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:33:17,096 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:33:17,173 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:33:17,600 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:33:17,675 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:33:17,688 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:33:18,162 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:33:18,162 INFO Total cutcounts = 10914458 2025-01-31 09:33:18,167 INFO Smoothing signal using MODWT 2025-01-31 09:33:18,168 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:33:18,204 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:18,207 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:18,207 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:18,209 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:18,209 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:18,209 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:32,684 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:34,699 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:35,512 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:35,853 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:04,312 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:19,237 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:17,311 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:19,243 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:23,334 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:25,485 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:30,369 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:56,929 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:39,431 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:45,719 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:46,107 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:58,544 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:39:58,544 INFO Estimating parameters of background model 2025-01-31 09:39:58,544 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:40:02,970 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:40:03,230 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:40:03,297 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:40:03,677 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:40:04,455 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:40:04,609 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:40:20,436 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:40:20,438 DEBUG chr5: Signal quantile: 0.993. signal threshold: 10. Best RMSEA: 0.019 2025-01-31 09:40:21,307 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:40:21,309 DEBUG chr3: Signal quantile: 0.995. signal threshold: 10. Best RMSEA: 0.020 2025-01-31 09:40:22,229 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:40:22,231 DEBUG chr4: Signal quantile: 0.993. signal threshold: 10. Best RMSEA: 0.018 2025-01-31 09:40:22,946 DEBUG chr5 total SNP count: 249896 2025-01-31 09:40:22,946 DEBUG chr5 length: 151834684 2025-01-31 09:40:22,946 DEBUG ----------------------------------------- 2025-01-31 09:40:22,946 INFO Processing SNPs in chr5 2025-01-31 09:40:23,190 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 249896)] 2025-01-31 09:40:23,361 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:23,378 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:40:23,380 DEBUG chrX: Signal quantile: 0.995. signal threshold: 6. Best RMSEA: 0.038 2025-01-31 09:40:23,971 DEBUG chr3 total SNP count: 256301 2025-01-31 09:40:23,972 DEBUG chr3 length: 160039680 2025-01-31 09:40:23,972 DEBUG ----------------------------------------- 2025-01-31 09:40:23,972 INFO Processing SNPs in chr3 2025-01-31 09:40:24,224 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 256301)] 2025-01-31 09:40:24,396 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:25,279 DEBUG chr4 total SNP count: 251928 2025-01-31 09:40:25,279 DEBUG chr4 length: 156508116 2025-01-31 09:40:25,280 DEBUG ----------------------------------------- 2025-01-31 09:40:25,280 INFO Processing SNPs in chr4 2025-01-31 09:40:25,667 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 62523), (62523, 251928)] 2025-01-31 09:40:25,791 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:25,831 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:40:25,834 DEBUG chr2: Signal quantile: 0.993. signal threshold: 10. Best RMSEA: 0.021 2025-01-31 09:40:26,215 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:40:26,218 DEBUG chr1: Signal quantile: 0.994. signal threshold: 10. Best RMSEA: 0.020 2025-01-31 09:40:26,853 DEBUG chrX total SNP count: 240326 2025-01-31 09:40:26,853 DEBUG chrX length: 171031299 2025-01-31 09:40:26,853 DEBUG ----------------------------------------- 2025-01-31 09:40:26,853 INFO Processing SNPs in chrX 2025-01-31 09:40:27,243 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32270), (32270, 32272), (32272, 32324), (32324, 171045), (171045, 240326)] 2025-01-31 09:40:27,357 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:29,492 DEBUG chr2 total SNP count: 307070 2025-01-31 09:40:29,492 DEBUG chr2 length: 182113224 2025-01-31 09:40:29,492 DEBUG ----------------------------------------- 2025-01-31 09:40:29,492 INFO Processing SNPs in chr2 2025-01-31 09:40:29,984 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 299260), (299260, 307070)] 2025-01-31 09:40:30,072 DEBUG chr1 total SNP count: 332770 2025-01-31 09:40:30,072 DEBUG chr1 length: 195471971 2025-01-31 09:40:30,072 DEBUG ----------------------------------------- 2025-01-31 09:40:30,072 INFO Processing SNPs in chr1 2025-01-31 09:40:30,201 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:30,410 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 332770)] 2025-01-31 09:40:30,640 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:31,276 DEBUG Segmenting atomic regions: 2025-01-31 09:40:31,383 DEBUG Processing 1/106 atomic regions from SNP 0 to 602 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:32,975 DEBUG Processing 2/106 atomic regions from SNP 302 to 904 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:33,202 DEBUG Processing 3/106 atomic regions from SNP 604 to 1206 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:33,264 DEBUG Segmenting atomic regions: 2025-01-31 09:40:33,374 DEBUG Processing 1/207 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:33,502 DEBUG Processing 4/106 atomic regions from SNP 906 to 1508 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:33,794 DEBUG Processing 5/106 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:34,063 DEBUG Processing 6/106 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:34,187 DEBUG Processing 2/207 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:34,354 DEBUG Processing 7/106 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:34,482 DEBUG Processing 3/207 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:34,570 DEBUG Processing 8/106 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:34,715 DEBUG Processing 4/207 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:34,786 DEBUG Processing 9/106 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:35,014 DEBUG Processing 5/207 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:35,069 DEBUG Processing 10/106 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:35,282 DEBUG Processing 6/207 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:35,380 DEBUG Processing 11/106 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:35,598 DEBUG Processing 7/207 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:35,663 DEBUG Processing 12/106 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:35,861 DEBUG Processing 8/207 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:35,977 DEBUG Processing 13/106 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:36,111 DEBUG Processing 9/207 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:36,232 DEBUG Processing 14/106 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:36,371 DEBUG Processing 10/207 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:36,534 DEBUG Processing 15/106 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:36,704 DEBUG Processing 11/207 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:36,820 DEBUG Processing 16/106 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:36,938 DEBUG Processing 12/207 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:37,079 DEBUG Processing 17/106 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:37,190 DEBUG Processing 13/207 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:37,375 DEBUG Processing 18/106 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:37,491 DEBUG Processing 14/207 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:37,631 DEBUG Processing 19/106 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:37,781 DEBUG Processing 15/207 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:37,909 DEBUG Processing 20/106 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:38,038 DEBUG Processing 16/207 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:38,148 DEBUG Processing 21/106 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:38,265 DEBUG Processing 17/207 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:38,366 DEBUG Processing 22/106 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:38,487 DEBUG Processing 18/207 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:38,585 DEBUG Processing 23/106 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:38,736 DEBUG Processing 19/207 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:38,847 DEBUG Processing 24/106 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:38,992 DEBUG Processing 20/207 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:39,099 DEBUG Processing 25/106 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:39,215 DEBUG Processing 21/207 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:39,334 DEBUG Processing 26/106 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:39,541 DEBUG Processing 22/207 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:39,650 DEBUG Processing 27/106 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:39,785 DEBUG Processing 23/207 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:39,951 DEBUG Processing 28/106 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:40,081 DEBUG Processing 24/207 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:40,256 DEBUG Processing 29/106 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:40,370 DEBUG Processing 25/207 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:40,533 DEBUG Processing 30/106 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:40,602 DEBUG Processing 26/207 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:40,776 DEBUG Processing 31/106 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:40,866 DEBUG Processing 27/207 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,023 DEBUG Processing 32/106 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:41,085 DEBUG Processing 28/207 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,267 DEBUG Processing 33/106 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:41,315 DEBUG Processing 29/207 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,485 DEBUG Processing 34/106 atomic regions from SNP 9966 to 10568 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:41,533 DEBUG Processing 30/207 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,695 DEBUG Processing 35/106 atomic regions from SNP 10268 to 10870 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:41,749 DEBUG Processing 31/207 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,909 DEBUG Processing 36/106 atomic regions from SNP 10570 to 11172 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:41,966 DEBUG Processing 32/207 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,131 DEBUG Processing 37/106 atomic regions from SNP 10872 to 11474 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:42,182 DEBUG Processing 33/207 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,379 DEBUG Processing 38/106 atomic regions from SNP 11174 to 11776 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:42,403 DEBUG Processing 34/207 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,618 DEBUG Processing 35/207 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,622 DEBUG Processing 39/106 atomic regions from SNP 11476 to 12078 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:42,837 DEBUG Processing 36/207 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,842 DEBUG Processing 40/106 atomic regions from SNP 11778 to 12380 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:43,056 DEBUG Processing 37/207 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,062 DEBUG Processing 41/106 atomic regions from SNP 12080 to 12682 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:43,275 DEBUG Processing 38/207 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,276 DEBUG Processing 42/106 atomic regions from SNP 12382 to 12984 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:43,486 DEBUG Processing 43/106 atomic regions from SNP 12684 to 13286 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:43,489 DEBUG Processing 39/207 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,700 DEBUG Processing 44/106 atomic regions from SNP 12986 to 13588 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:43,702 DEBUG Processing 40/207 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,915 DEBUG Processing 41/207 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,917 DEBUG Processing 45/106 atomic regions from SNP 13288 to 13890 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:44,127 DEBUG Processing 46/106 atomic regions from SNP 13590 to 14192 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:44,130 DEBUG Processing 42/207 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,334 DEBUG Processing 47/106 atomic regions from SNP 13892 to 14494 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:44,342 DEBUG Processing 43/207 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,540 DEBUG Processing 48/106 atomic regions from SNP 14194 to 14796 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:44,560 DEBUG Processing 44/207 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,752 DEBUG Processing 49/106 atomic regions from SNP 14496 to 15098 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:44,783 DEBUG Processing 45/207 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,961 DEBUG Processing 50/106 atomic regions from SNP 14798 to 15400 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:44,996 DEBUG Processing 46/207 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:45,173 DEBUG Processing 51/106 atomic regions from SNP 15100 to 15702 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:45,214 DEBUG Processing 47/207 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:45,386 DEBUG Processing 52/106 atomic regions from SNP 15402 to 16004 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:45,429 DEBUG Processing 48/207 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:45,594 DEBUG Processing 53/106 atomic regions from SNP 15704 to 16306 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:45,642 DEBUG Processing 49/207 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:45,801 DEBUG Processing 54/106 atomic regions from SNP 16006 to 16608 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:45,857 DEBUG Processing 50/207 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,010 DEBUG Processing 55/106 atomic regions from SNP 16308 to 16910 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:46,070 DEBUG Processing 51/207 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,223 DEBUG Processing 56/106 atomic regions from SNP 16610 to 17212 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:46,286 DEBUG Processing 52/207 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,434 DEBUG Processing 57/106 atomic regions from SNP 16912 to 17514 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:46,496 DEBUG Processing 53/207 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,647 DEBUG Processing 58/106 atomic regions from SNP 17214 to 17816 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:46,712 DEBUG Processing 54/207 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,860 DEBUG Processing 59/106 atomic regions from SNP 17516 to 18118 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:46,927 DEBUG Processing 55/207 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,070 DEBUG Processing 60/106 atomic regions from SNP 17818 to 18420 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:47,142 DEBUG Processing 56/207 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,285 DEBUG Processing 61/106 atomic regions from SNP 18120 to 18722 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:47,357 DEBUG Processing 57/207 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,496 DEBUG Processing 62/106 atomic regions from SNP 18422 to 19024 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:47,573 DEBUG Processing 58/207 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,706 DEBUG Processing 63/106 atomic regions from SNP 18724 to 19326 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:47,786 DEBUG Processing 59/207 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,918 DEBUG Processing 64/106 atomic regions from SNP 19026 to 19627 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:48,003 DEBUG Processing 60/207 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,141 DEBUG Processing 65/106 atomic regions from SNP 19327 to 19928 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:48,218 DEBUG Processing 61/207 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,353 DEBUG Processing 66/106 atomic regions from SNP 19628 to 20229 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:48,435 DEBUG Processing 62/207 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,569 DEBUG Processing 67/106 atomic regions from SNP 19929 to 20530 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:48,647 DEBUG Processing 63/207 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,793 DEBUG Processing 68/106 atomic regions from SNP 20230 to 20831 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:48,856 DEBUG Processing 64/207 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:49,101 DEBUG Processing 69/106 atomic regions from SNP 20531 to 21132 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:49,137 DEBUG Processing 65/207 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:49,423 DEBUG Processing 70/106 atomic regions from SNP 20832 to 21433 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:49,451 DEBUG Processing 66/207 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:49,641 DEBUG Processing 71/106 atomic regions from SNP 21133 to 21734 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:49,673 DEBUG Processing 67/207 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:49,857 DEBUG Processing 72/106 atomic regions from SNP 21434 to 22035 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:49,887 DEBUG Processing 68/207 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,075 DEBUG Processing 73/106 atomic regions from SNP 21735 to 22336 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:50,103 DEBUG Processing 69/207 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,295 DEBUG Processing 74/106 atomic regions from SNP 22036 to 22637 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:50,319 DEBUG Processing 70/207 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,515 DEBUG Processing 75/106 atomic regions from SNP 22337 to 22938 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:50,535 DEBUG Processing 71/207 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,793 DEBUG Processing 76/106 atomic regions from SNP 22638 to 23239 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:50,805 DEBUG Processing 72/207 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,008 DEBUG Processing 77/106 atomic regions from SNP 22939 to 23540 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:51,030 DEBUG Processing 73/207 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,224 DEBUG Processing 78/106 atomic regions from SNP 23240 to 23841 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:51,247 DEBUG Processing 74/207 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,453 DEBUG Processing 79/106 atomic regions from SNP 23541 to 24142 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:51,481 DEBUG Processing 75/207 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,762 DEBUG Processing 80/106 atomic regions from SNP 23842 to 24443 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:51,805 DEBUG Processing 76/207 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,989 DEBUG Processing 81/106 atomic regions from SNP 24143 to 24744 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:52,029 DEBUG Processing 77/207 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,207 DEBUG Processing 82/106 atomic regions from SNP 24444 to 25045 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:52,250 DEBUG Processing 78/207 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,423 DEBUG Processing 83/106 atomic regions from SNP 24745 to 25346 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:52,467 DEBUG Processing 79/207 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,640 DEBUG Processing 84/106 atomic regions from SNP 25046 to 25647 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:52,688 DEBUG Processing 80/207 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,891 DEBUG Processing 85/106 atomic regions from SNP 25347 to 25948 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:52,923 DEBUG Processing 81/207 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,179 DEBUG Processing 86/106 atomic regions from SNP 25648 to 26249 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:53,183 DEBUG Segmenting atomic regions: 2025-01-31 09:40:53,188 DEBUG Processing 82/207 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,289 DEBUG Processing 1/831 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:53,403 DEBUG Processing 83/207 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,412 DEBUG Processing 87/106 atomic regions from SNP 25949 to 26550 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:53,618 DEBUG Processing 84/207 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,629 DEBUG Processing 88/106 atomic regions from SNP 26250 to 26851 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:53,831 DEBUG Processing 85/207 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,839 DEBUG Processing 89/106 atomic regions from SNP 26551 to 27152 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:54,048 DEBUG Processing 86/207 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,050 DEBUG Processing 90/106 atomic regions from SNP 26852 to 27453 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:54,102 DEBUG Processing 2/831 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,264 DEBUG Processing 91/106 atomic regions from SNP 27153 to 27754 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:54,265 DEBUG Processing 87/207 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,314 DEBUG Processing 3/831 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,478 DEBUG Processing 92/106 atomic regions from SNP 27454 to 28055 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:54,479 DEBUG Processing 88/207 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,525 DEBUG Processing 4/831 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,693 DEBUG Processing 89/207 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,696 DEBUG Processing 93/106 atomic regions from SNP 27755 to 28356 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:54,736 DEBUG Processing 5/831 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,741 DEBUG Segmenting atomic regions: 2025-01-31 09:40:54,852 DEBUG Processing 1/853 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:54,906 DEBUG Processing 94/106 atomic regions from SNP 28056 to 28657 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:54,906 DEBUG Processing 90/207 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,946 DEBUG Processing 6/831 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,118 DEBUG Processing 95/106 atomic regions from SNP 28357 to 28958 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:55,121 DEBUG Processing 91/207 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:55,155 DEBUG Processing 7/831 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,328 DEBUG Processing 96/106 atomic regions from SNP 28658 to 29259 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:55,336 DEBUG Processing 92/207 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:55,368 DEBUG Processing 8/831 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,526 DEBUG Processing 2/853 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:55,538 DEBUG Processing 97/106 atomic regions from SNP 28959 to 29560 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:55,549 DEBUG Processing 93/207 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:55,580 DEBUG Processing 9/831 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,739 DEBUG Processing 3/853 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:55,749 DEBUG Processing 98/106 atomic regions from SNP 29260 to 29861 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:55,766 DEBUG Processing 94/207 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:55,793 DEBUG Processing 10/831 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,953 DEBUG Processing 4/853 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:55,960 DEBUG Processing 99/106 atomic regions from SNP 29561 to 30162 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:55,980 DEBUG Processing 95/207 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,003 DEBUG Processing 11/831 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,166 DEBUG Processing 5/853 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,168 DEBUG Processing 100/106 atomic regions from SNP 29862 to 30463 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:56,195 DEBUG Processing 96/207 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,211 DEBUG Processing 12/831 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,375 DEBUG Processing 101/106 atomic regions from SNP 30163 to 30764 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:56,381 DEBUG Processing 6/853 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,409 DEBUG Processing 97/207 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,421 DEBUG Processing 13/831 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,587 DEBUG Processing 102/106 atomic regions from SNP 30464 to 31065 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:56,596 DEBUG Processing 7/853 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,624 DEBUG Processing 98/207 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,634 DEBUG Processing 14/831 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,795 DEBUG Processing 103/106 atomic regions from SNP 30765 to 31366 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:56,809 DEBUG Processing 8/853 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,837 DEBUG Processing 99/207 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,845 DEBUG Processing 15/831 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,004 DEBUG Processing 104/106 atomic regions from SNP 31066 to 31667 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:57,022 DEBUG Processing 9/853 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:57,049 DEBUG Processing 100/207 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,055 DEBUG Processing 16/831 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,214 DEBUG Processing 105/106 atomic regions from SNP 31367 to 31968 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:57,237 DEBUG Processing 10/853 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:57,261 DEBUG Processing 101/207 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,266 DEBUG Processing 17/831 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,423 DEBUG Processing 106/106 atomic regions from SNP 31668 to 32269 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:57,450 DEBUG Processing 11/853 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:57,475 DEBUG Processing 102/207 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,479 DEBUG Processing 18/831 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,527 DEBUG Unique SNPs positions in subchromosome 1: 32270 2025-01-31 09:40:57,570 DEBUG Subchromosome time: 30.21354666724801, subchromosome SNPs: 32270 2025-01-31 09:40:57,604 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:57,665 DEBUG Processing 12/853 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:57,688 DEBUG Processing 103/207 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,688 DEBUG Processing 19/831 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,878 DEBUG Processing 13/853 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:57,899 DEBUG Processing 20/831 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,902 DEBUG Processing 104/207 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,091 DEBUG Processing 14/853 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,107 DEBUG Processing 21/831 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:58,114 DEBUG Processing 105/207 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,301 DEBUG Processing 15/853 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,315 DEBUG Processing 22/831 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:58,323 DEBUG Processing 106/207 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,513 DEBUG Processing 16/853 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,524 DEBUG Processing 23/831 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:58,533 DEBUG Processing 107/207 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,723 DEBUG Processing 17/853 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,734 DEBUG Processing 24/831 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:58,744 DEBUG Processing 108/207 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,940 DEBUG Processing 18/853 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,945 DEBUG Processing 25/831 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:58,956 DEBUG Processing 109/207 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:59,151 DEBUG Processing 19/853 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,156 DEBUG Processing 26/831 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,168 DEBUG Processing 110/207 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:59,367 DEBUG Processing 20/853 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,367 DEBUG Processing 27/831 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,378 DEBUG Processing 111/207 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:59,576 DEBUG Processing 21/853 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,578 DEBUG Processing 28/831 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,589 DEBUG Processing 112/207 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:59,786 DEBUG Processing 29/831 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,787 DEBUG Processing 22/853 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,800 DEBUG Processing 113/207 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:59,997 DEBUG Processing 30/831 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,998 DEBUG Processing 23/853 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,010 DEBUG Processing 114/207 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:00,206 DEBUG Processing 31/831 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,209 DEBUG Processing 24/853 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,221 DEBUG Processing 115/207 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:00,416 DEBUG Processing 32/831 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,421 DEBUG Processing 25/853 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,433 DEBUG Processing 116/207 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:00,626 DEBUG Processing 33/831 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,635 DEBUG Processing 26/853 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,645 DEBUG Processing 117/207 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:00,839 DEBUG Processing 34/831 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,845 DEBUG Processing 27/853 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,856 DEBUG Processing 118/207 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:01,048 DEBUG Processing 35/831 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,057 DEBUG Processing 28/853 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,069 DEBUG Processing 119/207 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:01,259 DEBUG Processing 36/831 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,270 DEBUG Processing 29/853 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,282 DEBUG Processing 120/207 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:01,471 DEBUG Processing 37/831 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,486 DEBUG Processing 30/853 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,509 DEBUG Processing 121/207 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:01,680 DEBUG Processing 38/831 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,697 DEBUG Processing 31/853 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,720 DEBUG Processing 122/207 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:01,890 DEBUG Processing 39/831 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,911 DEBUG Processing 32/853 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,932 DEBUG Processing 123/207 atomic regions from SNP 36722 to 37322 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:02,101 DEBUG Processing 40/831 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,122 DEBUG Processing 33/853 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,143 DEBUG Processing 124/207 atomic regions from SNP 37022 to 37622 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:02,313 DEBUG Processing 41/831 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,336 DEBUG Processing 34/853 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,354 DEBUG Processing 125/207 atomic regions from SNP 37322 to 37922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:02,524 DEBUG Processing 42/831 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,546 DEBUG Processing 35/853 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,565 DEBUG Processing 126/207 atomic regions from SNP 37622 to 38222 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:02,735 DEBUG Processing 43/831 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,759 DEBUG Processing 36/853 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,776 DEBUG Processing 127/207 atomic regions from SNP 37922 to 38522 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:02,946 DEBUG Processing 44/831 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,970 DEBUG Processing 37/853 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,986 DEBUG Processing 128/207 atomic regions from SNP 38222 to 38822 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,156 DEBUG Processing 45/831 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,181 DEBUG Processing 38/853 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,195 DEBUG Processing 129/207 atomic regions from SNP 38522 to 39122 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,367 DEBUG Processing 46/831 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,390 DEBUG Processing 39/853 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,405 DEBUG Processing 130/207 atomic regions from SNP 38822 to 39422 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,578 DEBUG Processing 47/831 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,602 DEBUG Processing 40/853 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,615 DEBUG Processing 131/207 atomic regions from SNP 39122 to 39722 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,789 DEBUG Processing 48/831 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,812 DEBUG Processing 41/853 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,825 DEBUG Processing 132/207 atomic regions from SNP 39422 to 40022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,999 DEBUG Processing 49/831 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,021 DEBUG Processing 42/853 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,036 DEBUG Processing 133/207 atomic regions from SNP 39722 to 40322 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,210 DEBUG Processing 50/831 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,231 DEBUG Processing 43/853 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,244 DEBUG Processing 134/207 atomic regions from SNP 40022 to 40622 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,419 DEBUG Processing 51/831 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,441 DEBUG Processing 44/853 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,454 DEBUG Processing 135/207 atomic regions from SNP 40322 to 40922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,628 DEBUG Processing 52/831 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,650 DEBUG Processing 45/853 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,663 DEBUG Processing 136/207 atomic regions from SNP 40622 to 41222 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,835 DEBUG Processing 53/831 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,861 DEBUG Processing 46/853 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,873 DEBUG Processing 137/207 atomic regions from SNP 40922 to 41522 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,045 DEBUG Processing 54/831 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,070 DEBUG Processing 47/853 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,082 DEBUG Processing 138/207 atomic regions from SNP 41222 to 41822 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,255 DEBUG Processing 55/831 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,283 DEBUG Processing 48/853 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,291 DEBUG Processing 139/207 atomic regions from SNP 41522 to 42122 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,465 DEBUG Processing 56/831 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,492 DEBUG Processing 49/853 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,503 DEBUG Processing 140/207 atomic regions from SNP 41822 to 42422 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,682 DEBUG Processing 57/831 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,706 DEBUG Processing 50/853 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,713 DEBUG Processing 141/207 atomic regions from SNP 42122 to 42722 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,890 DEBUG Processing 58/831 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,914 DEBUG Processing 51/853 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,924 DEBUG Processing 142/207 atomic regions from SNP 42422 to 43022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,921 DEBUG Segmenting atomic regions: 2025-01-31 09:41:06,058 DEBUG Processing 1/996 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:06,100 DEBUG Processing 59/831 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,125 DEBUG Processing 52/853 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,136 DEBUG Processing 143/207 atomic regions from SNP 42722 to 43322 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:06,313 DEBUG Processing 60/831 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,336 DEBUG Processing 53/853 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,349 DEBUG Processing 144/207 atomic regions from SNP 43022 to 43622 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:06,523 DEBUG Processing 61/831 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,548 DEBUG Processing 54/853 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,560 DEBUG Processing 145/207 atomic regions from SNP 43322 to 43922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:06,734 DEBUG Processing 62/831 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,757 DEBUG Processing 55/853 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,769 DEBUG Processing 2/996 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:06,770 DEBUG Processing 146/207 atomic regions from SNP 43622 to 44222 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:06,944 DEBUG Processing 63/831 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,969 DEBUG Processing 56/853 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,983 DEBUG Processing 147/207 atomic regions from SNP 43922 to 44522 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,004 DEBUG Processing 3/996 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:07,155 DEBUG Processing 64/831 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,178 DEBUG Processing 57/853 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,196 DEBUG Processing 148/207 atomic regions from SNP 44222 to 44822 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,239 DEBUG Processing 4/996 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:07,365 DEBUG Processing 65/831 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,389 DEBUG Processing 58/853 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,408 DEBUG Processing 149/207 atomic regions from SNP 44522 to 45122 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,475 DEBUG Processing 5/996 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:07,576 DEBUG Processing 66/831 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,598 DEBUG Processing 59/853 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,619 DEBUG Processing 150/207 atomic regions from SNP 44822 to 45422 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,709 DEBUG Processing 6/996 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:07,785 DEBUG Processing 67/831 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,809 DEBUG Processing 60/853 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,829 DEBUG Processing 151/207 atomic regions from SNP 45122 to 45722 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,943 DEBUG Processing 7/996 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:07,997 DEBUG Processing 68/831 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,020 DEBUG Processing 61/853 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,039 DEBUG Processing 152/207 atomic regions from SNP 45422 to 46022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,183 DEBUG Processing 8/996 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:08,208 DEBUG Processing 69/831 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,235 DEBUG Processing 62/853 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,249 DEBUG Processing 153/207 atomic regions from SNP 45722 to 46322 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,418 DEBUG Processing 70/831 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,426 DEBUG Processing 9/996 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:08,446 DEBUG Processing 63/853 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,460 DEBUG Processing 154/207 atomic regions from SNP 46022 to 46622 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,632 DEBUG Processing 71/831 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,661 DEBUG Processing 64/853 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,664 DEBUG Processing 10/996 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:08,673 DEBUG Processing 155/207 atomic regions from SNP 46322 to 46922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,841 DEBUG Processing 72/831 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,872 DEBUG Processing 65/853 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,884 DEBUG Processing 156/207 atomic regions from SNP 46622 to 47222 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,898 DEBUG Processing 11/996 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,050 DEBUG Processing 73/831 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,083 DEBUG Processing 66/853 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,095 DEBUG Processing 157/207 atomic regions from SNP 46922 to 47522 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:09,132 DEBUG Processing 12/996 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,258 DEBUG Processing 74/831 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,293 DEBUG Processing 67/853 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,306 DEBUG Processing 158/207 atomic regions from SNP 47222 to 47822 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:09,366 DEBUG Processing 13/996 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,466 DEBUG Processing 75/831 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,502 DEBUG Processing 68/853 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,519 DEBUG Segmenting atomic regions: 2025-01-31 09:41:09,520 DEBUG Processing 159/207 atomic regions from SNP 47522 to 48122 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:09,605 DEBUG Processing 14/996 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,661 DEBUG Processing 1/1108 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:09,675 DEBUG Processing 76/831 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,727 DEBUG Processing 69/853 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,735 DEBUG Processing 160/207 atomic regions from SNP 47822 to 48422 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:09,841 DEBUG Processing 15/996 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,899 DEBUG Processing 77/831 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,943 DEBUG Processing 70/853 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,953 DEBUG Processing 161/207 atomic regions from SNP 48122 to 48722 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,079 DEBUG Processing 16/996 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,112 DEBUG Processing 78/831 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,156 DEBUG Processing 71/853 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,168 DEBUG Processing 162/207 atomic regions from SNP 48422 to 49022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,317 DEBUG Processing 17/996 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,321 DEBUG Processing 79/831 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,370 DEBUG Processing 72/853 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,387 DEBUG Processing 163/207 atomic regions from SNP 48722 to 49322 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,463 DEBUG Processing 2/1108 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:10,536 DEBUG Processing 80/831 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,556 DEBUG Processing 18/996 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,585 DEBUG Processing 73/853 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,603 DEBUG Processing 164/207 atomic regions from SNP 49022 to 49622 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,710 DEBUG Processing 3/1108 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:10,748 DEBUG Processing 81/831 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,793 DEBUG Processing 19/996 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,797 DEBUG Processing 74/853 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,816 DEBUG Processing 165/207 atomic regions from SNP 49322 to 49922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,956 DEBUG Processing 4/1108 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:10,961 DEBUG Processing 82/831 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,009 DEBUG Processing 75/853 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,028 DEBUG Processing 166/207 atomic regions from SNP 49622 to 50222 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,032 DEBUG Processing 20/996 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,174 DEBUG Processing 83/831 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,205 DEBUG Processing 5/1108 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:11,220 DEBUG Processing 76/853 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,242 DEBUG Processing 167/207 atomic regions from SNP 49922 to 50522 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,268 DEBUG Processing 21/996 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,386 DEBUG Processing 84/831 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,431 DEBUG Processing 77/853 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,454 DEBUG Processing 6/1108 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:11,455 DEBUG Processing 168/207 atomic regions from SNP 50222 to 50822 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,506 DEBUG Processing 22/996 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,597 DEBUG Processing 85/831 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,645 DEBUG Processing 78/853 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,671 DEBUG Processing 169/207 atomic regions from SNP 50522 to 51122 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,705 DEBUG Processing 7/1108 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:11,740 DEBUG Processing 23/996 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,808 DEBUG Processing 86/831 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,856 DEBUG Processing 79/853 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,884 DEBUG Processing 170/207 atomic regions from SNP 50822 to 51422 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,950 DEBUG Processing 8/1108 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:11,976 DEBUG Processing 24/996 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,016 DEBUG Processing 87/831 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,065 DEBUG Processing 80/853 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,096 DEBUG Processing 171/207 atomic regions from SNP 51122 to 51722 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,199 DEBUG Processing 9/1108 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:12,210 DEBUG Processing 25/996 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,236 DEBUG Processing 88/831 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,277 DEBUG Processing 81/853 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,307 DEBUG Processing 172/207 atomic regions from SNP 51422 to 52022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,446 DEBUG Processing 10/1108 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:12,447 DEBUG Processing 89/831 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,449 DEBUG Processing 26/996 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,487 DEBUG Processing 82/853 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,519 DEBUG Processing 173/207 atomic regions from SNP 51722 to 52322 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,661 DEBUG Processing 90/831 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,686 DEBUG Processing 27/996 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,694 DEBUG Processing 11/1108 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:12,701 DEBUG Processing 83/853 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,731 DEBUG Processing 174/207 atomic regions from SNP 52022 to 52622 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,875 DEBUG Processing 91/831 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,916 DEBUG Processing 84/853 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,925 DEBUG Processing 28/996 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,944 DEBUG Processing 175/207 atomic regions from SNP 52322 to 52922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,944 DEBUG Processing 12/1108 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:13,081 DEBUG Processing 92/831 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,127 DEBUG Processing 85/853 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,159 DEBUG Processing 176/207 atomic regions from SNP 52622 to 53222 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,162 DEBUG Processing 29/996 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,191 DEBUG Processing 13/1108 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:13,288 DEBUG Processing 93/831 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,337 DEBUG Processing 86/853 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,371 DEBUG Processing 177/207 atomic regions from SNP 52922 to 53522 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,399 DEBUG Processing 30/996 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,440 DEBUG Processing 14/1108 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:13,496 DEBUG Processing 94/831 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,548 DEBUG Processing 87/853 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,585 DEBUG Processing 178/207 atomic regions from SNP 53222 to 53822 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,635 DEBUG Processing 31/996 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,685 DEBUG Processing 15/1108 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:13,705 DEBUG Processing 95/831 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,758 DEBUG Processing 88/853 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,796 DEBUG Processing 179/207 atomic regions from SNP 53522 to 54122 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,872 DEBUG Processing 32/996 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,916 DEBUG Processing 96/831 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,916 DEBUG Segmenting atomic regions: 2025-01-31 09:41:13,931 DEBUG Processing 16/1108 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:13,968 DEBUG Processing 89/853 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,008 DEBUG Processing 180/207 atomic regions from SNP 53822 to 54422 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,021 DEBUG Processing 1/461 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:14,106 DEBUG Processing 33/996 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,127 DEBUG Processing 97/831 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,176 DEBUG Processing 17/1108 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:14,178 DEBUG Processing 90/853 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,220 DEBUG Processing 181/207 atomic regions from SNP 54122 to 54722 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,230 DEBUG Processing 2/461 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:14,338 DEBUG Processing 98/831 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,342 DEBUG Processing 34/996 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,389 DEBUG Processing 91/853 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,425 DEBUG Processing 18/1108 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:14,434 DEBUG Processing 182/207 atomic regions from SNP 54422 to 55022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,437 DEBUG Processing 3/461 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:14,551 DEBUG Processing 99/831 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,582 DEBUG Processing 35/996 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,604 DEBUG Processing 92/853 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,643 DEBUG Processing 4/461 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:14,649 DEBUG Processing 183/207 atomic regions from SNP 54722 to 55322 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,673 DEBUG Processing 19/1108 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:14,760 DEBUG Processing 100/831 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,814 DEBUG Processing 93/853 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,819 DEBUG Processing 36/996 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,849 DEBUG Processing 5/461 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:14,862 DEBUG Processing 184/207 atomic regions from SNP 55022 to 55622 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,920 DEBUG Processing 20/1108 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:14,967 DEBUG Processing 101/831 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,024 DEBUG Processing 94/853 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,055 DEBUG Processing 37/996 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,056 DEBUG Processing 6/461 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:15,074 DEBUG Processing 185/207 atomic regions from SNP 55322 to 55922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,163 DEBUG Processing 21/1108 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,173 DEBUG Processing 102/831 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,234 DEBUG Processing 95/853 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,262 DEBUG Processing 7/461 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:15,286 DEBUG Processing 186/207 atomic regions from SNP 55622 to 56222 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,292 DEBUG Processing 38/996 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,381 DEBUG Processing 103/831 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,407 DEBUG Processing 22/1108 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,444 DEBUG Processing 96/853 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,469 DEBUG Processing 8/461 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:15,500 DEBUG Processing 187/207 atomic regions from SNP 55922 to 56522 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,527 DEBUG Processing 39/996 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,589 DEBUG Processing 104/831 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,652 DEBUG Processing 23/1108 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,653 DEBUG Processing 97/853 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,690 DEBUG Processing 9/461 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:15,712 DEBUG Processing 188/207 atomic regions from SNP 56222 to 56822 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,763 DEBUG Processing 40/996 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,797 DEBUG Processing 105/831 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,863 DEBUG Processing 98/853 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,897 DEBUG Processing 24/1108 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,916 DEBUG Processing 10/461 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:15,926 DEBUG Processing 189/207 atomic regions from SNP 56522 to 57122 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,999 DEBUG Processing 41/996 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,005 DEBUG Processing 106/831 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,074 DEBUG Processing 99/853 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,124 DEBUG Processing 11/461 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:16,139 DEBUG Processing 190/207 atomic regions from SNP 56822 to 57422 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:16,141 DEBUG Processing 25/1108 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,217 DEBUG Processing 107/831 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,236 DEBUG Processing 42/996 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,283 DEBUG Processing 100/853 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,331 DEBUG Processing 12/461 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:16,355 DEBUG Processing 191/207 atomic regions from SNP 57122 to 57722 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:16,389 DEBUG Processing 26/1108 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,460 DEBUG Processing 108/831 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,469 DEBUG Processing 43/996 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,493 DEBUG Processing 101/853 atomic regions from SNP 30100 to 30700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,538 DEBUG Processing 13/461 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:16,571 DEBUG Processing 192/207 atomic regions from SNP 57422 to 58022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:16,636 DEBUG Processing 27/1108 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,688 DEBUG Processing 109/831 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,703 DEBUG Processing 102/853 atomic regions from SNP 30400 to 31000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,704 DEBUG Processing 44/996 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,744 DEBUG Processing 14/461 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:16,782 DEBUG Processing 193/207 atomic regions from SNP 57722 to 58322 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:16,883 DEBUG Processing 28/1108 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,912 DEBUG Processing 103/853 atomic regions from SNP 30700 to 31300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,922 DEBUG Processing 110/831 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,939 DEBUG Processing 45/996 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,949 DEBUG Processing 15/461 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:16,994 DEBUG Processing 194/207 atomic regions from SNP 58022 to 58622 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,124 DEBUG Processing 104/853 atomic regions from SNP 31000 to 31600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,128 DEBUG Processing 29/1108 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,156 DEBUG Processing 16/461 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:17,158 DEBUG Processing 111/831 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,178 DEBUG Processing 46/996 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,207 DEBUG Processing 195/207 atomic regions from SNP 58322 to 58922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,339 DEBUG Processing 105/853 atomic regions from SNP 31300 to 31900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,367 DEBUG Processing 17/461 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:17,377 DEBUG Processing 30/1108 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,381 DEBUG Processing 112/831 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,421 DEBUG Processing 47/996 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,425 DEBUG Processing 196/207 atomic regions from SNP 58622 to 59222 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,551 DEBUG Processing 106/853 atomic regions from SNP 31600 to 32200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,573 DEBUG Processing 18/461 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:17,595 DEBUG Processing 113/831 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,625 DEBUG Processing 31/1108 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,638 DEBUG Processing 197/207 atomic regions from SNP 58922 to 59522 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,657 DEBUG Processing 48/996 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,762 DEBUG Processing 107/853 atomic regions from SNP 31900 to 32500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,777 DEBUG Processing 19/461 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:17,808 DEBUG Processing 114/831 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,857 DEBUG Processing 198/207 atomic regions from SNP 59222 to 59822 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,882 DEBUG Processing 32/1108 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,889 DEBUG Processing 49/996 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,974 DEBUG Processing 108/853 atomic regions from SNP 32200 to 32800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,983 DEBUG Processing 20/461 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:18,042 DEBUG Processing 115/831 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,078 DEBUG Processing 199/207 atomic regions from SNP 59522 to 60122 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:18,125 DEBUG Processing 50/996 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,127 DEBUG Processing 33/1108 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,184 DEBUG Processing 109/853 atomic regions from SNP 32500 to 33100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,188 DEBUG Processing 21/461 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:18,253 DEBUG Processing 116/831 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,286 DEBUG Processing 200/207 atomic regions from SNP 59822 to 60422 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:18,364 DEBUG Processing 51/996 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,373 DEBUG Processing 34/1108 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,398 DEBUG Processing 110/853 atomic regions from SNP 32800 to 33400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,400 DEBUG Processing 22/461 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:18,469 DEBUG Processing 117/831 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,506 DEBUG Processing 201/207 atomic regions from SNP 60122 to 60722 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:18,607 DEBUG Processing 52/996 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,610 DEBUG Processing 111/853 atomic regions from SNP 33100 to 33700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,610 DEBUG Processing 23/461 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:18,626 DEBUG Processing 35/1108 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,677 DEBUG Processing 118/831 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,715 DEBUG Processing 202/207 atomic regions from SNP 60422 to 61022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:18,815 DEBUG Processing 24/461 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:18,820 DEBUG Processing 112/853 atomic regions from SNP 33400 to 34000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,843 DEBUG Processing 53/996 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,873 DEBUG Processing 36/1108 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,887 DEBUG Processing 119/831 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,931 DEBUG Processing 203/207 atomic regions from SNP 60722 to 61322 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,021 DEBUG Processing 25/461 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:19,030 DEBUG Processing 113/853 atomic regions from SNP 33700 to 34300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,082 DEBUG Processing 54/996 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,102 DEBUG Processing 120/831 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,123 DEBUG Processing 37/1108 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,167 DEBUG Processing 204/207 atomic regions from SNP 61022 to 61622 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,230 DEBUG Processing 26/461 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:19,242 DEBUG Processing 114/853 atomic regions from SNP 34000 to 34600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,314 DEBUG Processing 121/831 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,318 DEBUG Processing 55/996 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,368 DEBUG Processing 38/1108 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,409 DEBUG Processing 205/207 atomic regions from SNP 61322 to 61922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,441 DEBUG Processing 27/461 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:19,457 DEBUG Processing 115/853 atomic regions from SNP 34300 to 34900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,529 DEBUG Processing 122/831 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,558 DEBUG Processing 56/996 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,616 DEBUG Processing 39/1108 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,622 DEBUG Processing 206/207 atomic regions from SNP 61622 to 62222 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,655 DEBUG Processing 28/461 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:19,668 DEBUG Processing 116/853 atomic regions from SNP 34600 to 35200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,739 DEBUG Processing 123/831 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,803 DEBUG Processing 57/996 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,837 DEBUG Processing 207/207 atomic regions from SNP 61922 to 62522 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,863 DEBUG Processing 40/1108 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,865 DEBUG Processing 29/461 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:19,881 DEBUG Processing 117/853 atomic regions from SNP 34900 to 35500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,948 DEBUG Processing 124/831 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,958 DEBUG Unique SNPs positions in subchromosome 1: 62523 2025-01-31 09:41:20,038 DEBUG Processing 58/996 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,049 DEBUG Subchromosome time: 54.257119897753, subchromosome SNPs: 62523 2025-01-31 09:41:20,074 DEBUG Processing 30/461 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:20,095 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:20,097 DEBUG Processing 118/853 atomic regions from SNP 35200 to 35800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,115 DEBUG Processing 41/1108 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,162 DEBUG Processing 125/831 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,274 DEBUG Processing 59/996 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,285 DEBUG Processing 31/461 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:20,310 DEBUG Processing 119/853 atomic regions from SNP 35500 to 36100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,363 DEBUG Processing 42/1108 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,371 DEBUG Processing 126/831 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,490 DEBUG Processing 32/461 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:20,509 DEBUG Processing 60/996 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,523 DEBUG Processing 120/853 atomic regions from SNP 35800 to 36400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,583 DEBUG Processing 127/831 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,611 DEBUG Processing 43/1108 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,696 DEBUG Processing 33/461 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:20,734 DEBUG Processing 121/853 atomic regions from SNP 36100 to 36700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,744 DEBUG Processing 61/996 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,798 DEBUG Processing 128/831 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,858 DEBUG Processing 44/1108 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,903 DEBUG Processing 34/461 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:20,949 DEBUG Processing 122/853 atomic regions from SNP 36400 to 37000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,980 DEBUG Processing 62/996 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,009 DEBUG Processing 129/831 atomic regions from SNP 38528 to 39129 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,103 DEBUG Processing 45/1108 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,110 DEBUG Processing 35/461 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:21,159 DEBUG Processing 123/853 atomic regions from SNP 36700 to 37300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,220 DEBUG Processing 63/996 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,221 DEBUG Processing 130/831 atomic regions from SNP 38829 to 39430 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,321 DEBUG Processing 36/461 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:21,349 DEBUG Processing 46/1108 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,372 DEBUG Processing 124/853 atomic regions from SNP 37000 to 37600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,431 DEBUG Processing 131/831 atomic regions from SNP 39130 to 39731 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,460 DEBUG Processing 64/996 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,526 DEBUG Processing 37/461 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:21,585 DEBUG Processing 125/853 atomic regions from SNP 37300 to 37900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,595 DEBUG Processing 47/1108 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,644 DEBUG Processing 132/831 atomic regions from SNP 39431 to 40032 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,694 DEBUG Processing 65/996 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,729 DEBUG Processing 38/461 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:21,801 DEBUG Processing 126/853 atomic regions from SNP 37600 to 38200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,845 DEBUG Processing 48/1108 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,857 DEBUG Processing 133/831 atomic regions from SNP 39732 to 40333 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,933 DEBUG Processing 39/461 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:21,945 DEBUG Processing 66/996 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,014 DEBUG Processing 127/853 atomic regions from SNP 37900 to 38500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,068 DEBUG Processing 134/831 atomic regions from SNP 40033 to 40634 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,097 DEBUG Processing 49/1108 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,140 DEBUG Processing 40/461 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:22,180 DEBUG Processing 67/996 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,227 DEBUG Processing 128/853 atomic regions from SNP 38200 to 38800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,282 DEBUG Processing 135/831 atomic regions from SNP 40334 to 40935 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,344 DEBUG Processing 50/1108 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,345 DEBUG Processing 41/461 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:22,414 DEBUG Processing 68/996 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,438 DEBUG Processing 129/853 atomic regions from SNP 38500 to 39100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,490 DEBUG Processing 136/831 atomic regions from SNP 40635 to 41236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,549 DEBUG Processing 42/461 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:22,588 DEBUG Processing 51/1108 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,647 DEBUG Processing 69/996 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,648 DEBUG Processing 130/853 atomic regions from SNP 38800 to 39400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,697 DEBUG Processing 137/831 atomic regions from SNP 40936 to 41537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,749 DEBUG Processing 43/461 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:22,830 DEBUG Processing 52/1108 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,859 DEBUG Processing 131/853 atomic regions from SNP 39100 to 39700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,880 DEBUG Processing 70/996 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,907 DEBUG Processing 138/831 atomic regions from SNP 41237 to 41838 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,952 DEBUG Processing 44/461 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:23,072 DEBUG Processing 132/853 atomic regions from SNP 39400 to 40000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,076 DEBUG Processing 53/1108 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,114 DEBUG Processing 71/996 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,117 DEBUG Processing 139/831 atomic regions from SNP 41538 to 42139 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,155 DEBUG Processing 45/461 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:23,286 DEBUG Processing 133/853 atomic regions from SNP 39700 to 40300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,321 DEBUG Processing 54/1108 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,330 DEBUG Processing 140/831 atomic regions from SNP 41839 to 42440 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,351 DEBUG Processing 72/996 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,359 DEBUG Processing 46/461 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:23,500 DEBUG Processing 134/853 atomic regions from SNP 40000 to 40600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,543 DEBUG Processing 141/831 atomic regions from SNP 42140 to 42741 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,565 DEBUG Processing 47/461 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:23,568 DEBUG Processing 55/1108 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,588 DEBUG Processing 73/996 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,711 DEBUG Processing 135/853 atomic regions from SNP 40300 to 40900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,756 DEBUG Processing 142/831 atomic regions from SNP 42441 to 43042 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,774 DEBUG Processing 48/461 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:23,819 DEBUG Processing 56/1108 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,828 DEBUG Processing 74/996 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,923 DEBUG Processing 136/853 atomic regions from SNP 40600 to 41200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,975 DEBUG Processing 143/831 atomic regions from SNP 42742 to 43343 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,982 DEBUG Processing 49/461 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:24,064 DEBUG Processing 75/996 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,066 DEBUG Processing 57/1108 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,136 DEBUG Processing 137/853 atomic regions from SNP 40900 to 41500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,191 DEBUG Processing 50/461 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:24,203 DEBUG Processing 144/831 atomic regions from SNP 43043 to 43644 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,299 DEBUG Processing 76/996 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,312 DEBUG Processing 58/1108 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,350 DEBUG Processing 138/853 atomic regions from SNP 41200 to 41800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,398 DEBUG Processing 51/461 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:24,434 DEBUG Processing 145/831 atomic regions from SNP 43344 to 43945 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,543 DEBUG Processing 77/996 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,562 DEBUG Processing 59/1108 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,567 DEBUG Processing 139/853 atomic regions from SNP 41500 to 42100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,613 DEBUG Processing 52/461 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:24,680 DEBUG Processing 146/831 atomic regions from SNP 43645 to 44246 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,777 DEBUG Processing 78/996 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,781 DEBUG Processing 140/853 atomic regions from SNP 41800 to 42400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,807 DEBUG Processing 60/1108 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,820 DEBUG Processing 53/461 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:24,927 DEBUG Processing 147/831 atomic regions from SNP 43946 to 44547 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,995 DEBUG Processing 141/853 atomic regions from SNP 42100 to 42700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,012 DEBUG Processing 79/996 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,025 DEBUG Processing 54/461 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:25,058 DEBUG Processing 61/1108 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,157 DEBUG Processing 148/831 atomic regions from SNP 44247 to 44848 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,210 DEBUG Processing 142/853 atomic regions from SNP 42400 to 43000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,234 DEBUG Processing 55/461 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:25,252 DEBUG Processing 80/996 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,309 DEBUG Processing 62/1108 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,367 DEBUG Processing 149/831 atomic regions from SNP 44548 to 45149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,425 DEBUG Processing 143/853 atomic regions from SNP 42700 to 43300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,441 DEBUG Processing 56/461 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:25,492 DEBUG Processing 81/996 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,559 DEBUG Processing 63/1108 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,581 DEBUG Processing 150/831 atomic regions from SNP 44849 to 45450 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,641 DEBUG Processing 144/853 atomic regions from SNP 43000 to 43600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,647 DEBUG Processing 57/461 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:25,726 DEBUG Processing 82/996 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,794 DEBUG Processing 151/831 atomic regions from SNP 45150 to 45751 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,807 DEBUG Processing 64/1108 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,854 DEBUG Processing 58/461 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:25,859 DEBUG Processing 145/853 atomic regions from SNP 43300 to 43900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,963 DEBUG Processing 83/996 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,009 DEBUG Processing 152/831 atomic regions from SNP 45451 to 46052 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,057 DEBUG Processing 65/1108 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,063 DEBUG Processing 59/461 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:26,075 DEBUG Processing 146/853 atomic regions from SNP 43600 to 44200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,198 DEBUG Processing 84/996 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,222 DEBUG Processing 153/831 atomic regions from SNP 45752 to 46353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,270 DEBUG Processing 60/461 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:26,299 DEBUG Processing 147/853 atomic regions from SNP 43900 to 44500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,309 DEBUG Processing 66/1108 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,430 DEBUG Processing 85/996 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,434 DEBUG Processing 154/831 atomic regions from SNP 46053 to 46654 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,479 DEBUG Processing 61/461 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:26,523 DEBUG Processing 148/853 atomic regions from SNP 44200 to 44800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,564 DEBUG Processing 67/1108 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,645 DEBUG Processing 155/831 atomic regions from SNP 46354 to 46955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,686 DEBUG Processing 62/461 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:26,692 DEBUG Processing 86/996 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,753 DEBUG Processing 149/853 atomic regions from SNP 44500 to 45100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,816 DEBUG Processing 68/1108 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,856 DEBUG Processing 156/831 atomic regions from SNP 46655 to 47256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,892 DEBUG Processing 63/461 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:26,962 DEBUG Processing 87/996 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,974 DEBUG Processing 150/853 atomic regions from SNP 44800 to 45400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,066 DEBUG Processing 157/831 atomic regions from SNP 46956 to 47557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,067 DEBUG Processing 69/1108 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,098 DEBUG Processing 64/461 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:27,188 DEBUG Processing 151/853 atomic regions from SNP 45100 to 45700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,198 DEBUG Processing 88/996 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,284 DEBUG Processing 158/831 atomic regions from SNP 47257 to 47858 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,306 DEBUG Processing 65/461 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:27,313 DEBUG Processing 70/1108 atomic regions from SNP 20769 to 21369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,401 DEBUG Processing 152/853 atomic regions from SNP 45400 to 46000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,435 DEBUG Processing 89/996 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,495 DEBUG Processing 159/831 atomic regions from SNP 47558 to 48159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,509 DEBUG Processing 66/461 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:27,557 DEBUG Processing 71/1108 atomic regions from SNP 21069 to 21669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,615 DEBUG Processing 153/853 atomic regions from SNP 45700 to 46300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,679 DEBUG Processing 90/996 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,715 DEBUG Processing 67/461 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:27,725 DEBUG Processing 160/831 atomic regions from SNP 47859 to 48460 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,805 DEBUG Processing 72/1108 atomic regions from SNP 21369 to 21969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,832 DEBUG Processing 154/853 atomic regions from SNP 46000 to 46600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,923 DEBUG Processing 68/461 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:27,924 DEBUG Processing 91/996 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,951 DEBUG Processing 161/831 atomic regions from SNP 48160 to 48761 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,053 DEBUG Processing 155/853 atomic regions from SNP 46300 to 46900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,063 DEBUG Processing 73/1108 atomic regions from SNP 21669 to 22269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,146 DEBUG Processing 69/461 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:28,165 DEBUG Processing 92/996 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,193 DEBUG Processing 162/831 atomic regions from SNP 48461 to 49062 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,271 DEBUG Processing 156/853 atomic regions from SNP 46600 to 47200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,317 DEBUG Processing 74/1108 atomic regions from SNP 21969 to 22569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,368 DEBUG Processing 70/461 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:28,402 DEBUG Processing 93/996 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,423 DEBUG Processing 163/831 atomic regions from SNP 48762 to 49363 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,485 DEBUG Processing 157/853 atomic regions from SNP 46900 to 47500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,565 DEBUG Processing 75/1108 atomic regions from SNP 22269 to 22869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,584 DEBUG Processing 71/461 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:28,638 DEBUG Processing 164/831 atomic regions from SNP 49063 to 49664 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,648 DEBUG Processing 94/996 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,705 DEBUG Processing 158/853 atomic regions from SNP 47200 to 47800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,790 DEBUG Processing 72/461 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:28,809 DEBUG Processing 76/1108 atomic regions from SNP 22569 to 23169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,849 DEBUG Processing 165/831 atomic regions from SNP 49364 to 49965 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,887 DEBUG Processing 95/996 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,918 DEBUG Processing 159/853 atomic regions from SNP 47500 to 48100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,998 DEBUG Processing 73/461 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:29,055 DEBUG Processing 77/1108 atomic regions from SNP 22869 to 23469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,064 DEBUG Processing 166/831 atomic regions from SNP 49665 to 50266 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,133 DEBUG Processing 160/853 atomic regions from SNP 47800 to 48400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,134 DEBUG Processing 96/996 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,216 DEBUG Processing 74/461 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:29,291 DEBUG Processing 167/831 atomic regions from SNP 49966 to 50567 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,316 DEBUG Processing 78/1108 atomic regions from SNP 23169 to 23769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,362 DEBUG Processing 161/853 atomic regions from SNP 48100 to 48700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,387 DEBUG Processing 97/996 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,433 DEBUG Processing 75/461 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:29,540 DEBUG Processing 168/831 atomic regions from SNP 50267 to 50868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,579 DEBUG Processing 79/1108 atomic regions from SNP 23469 to 24069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,595 DEBUG Processing 162/853 atomic regions from SNP 48400 to 49000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,641 DEBUG Processing 98/996 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,656 DEBUG Processing 76/461 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:29,773 DEBUG Processing 169/831 atomic regions from SNP 50568 to 51169 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,830 DEBUG Processing 163/853 atomic regions from SNP 48700 to 49300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,849 DEBUG Processing 80/1108 atomic regions from SNP 23769 to 24369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,878 DEBUG Processing 77/461 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:29,893 DEBUG Processing 99/996 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,998 DEBUG Processing 170/831 atomic regions from SNP 50869 to 51470 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,064 DEBUG Processing 164/853 atomic regions from SNP 49000 to 49600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,105 DEBUG Processing 78/461 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:30,115 DEBUG Processing 81/1108 atomic regions from SNP 24069 to 24669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,150 DEBUG Processing 100/996 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,235 DEBUG Processing 171/831 atomic regions from SNP 51170 to 51771 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,291 DEBUG Processing 165/853 atomic regions from SNP 49300 to 49900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,325 DEBUG Processing 79/461 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:30,379 DEBUG Processing 82/1108 atomic regions from SNP 24369 to 24969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,396 DEBUG Processing 101/996 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,455 DEBUG Processing 172/831 atomic regions from SNP 51471 to 52072 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,513 DEBUG Processing 166/853 atomic regions from SNP 49600 to 50200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,542 DEBUG Processing 80/461 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:30,632 DEBUG Processing 83/1108 atomic regions from SNP 24669 to 25269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,644 DEBUG Processing 102/996 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,674 DEBUG Processing 173/831 atomic regions from SNP 51772 to 52373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,732 DEBUG Processing 167/853 atomic regions from SNP 49900 to 50500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,763 DEBUG Processing 81/461 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:30,883 DEBUG Processing 84/1108 atomic regions from SNP 24969 to 25569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,889 DEBUG Processing 103/996 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,894 DEBUG Processing 174/831 atomic regions from SNP 52073 to 52674 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,952 DEBUG Processing 168/853 atomic regions from SNP 50200 to 50800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,006 DEBUG Processing 82/461 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:31,111 DEBUG Processing 175/831 atomic regions from SNP 52374 to 52975 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,134 DEBUG Processing 85/1108 atomic regions from SNP 25269 to 25869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,134 DEBUG Processing 104/996 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,168 DEBUG Processing 169/853 atomic regions from SNP 50500 to 51100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,215 DEBUG Processing 83/461 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:31,325 DEBUG Processing 176/831 atomic regions from SNP 52675 to 53276 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,376 DEBUG Processing 105/996 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,386 DEBUG Processing 170/853 atomic regions from SNP 50800 to 51400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,386 DEBUG Processing 86/1108 atomic regions from SNP 25569 to 26169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,423 DEBUG Processing 84/461 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:31,537 DEBUG Processing 177/831 atomic regions from SNP 52976 to 53577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,605 DEBUG Processing 171/853 atomic regions from SNP 51100 to 51700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,619 DEBUG Processing 106/996 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,635 DEBUG Processing 85/461 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:31,638 DEBUG Processing 87/1108 atomic regions from SNP 25869 to 26469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,747 DEBUG Processing 178/831 atomic regions from SNP 53277 to 53878 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,823 DEBUG Processing 172/853 atomic regions from SNP 51400 to 52000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,852 DEBUG Processing 86/461 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:31,863 DEBUG Processing 107/996 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,887 DEBUG Processing 88/1108 atomic regions from SNP 26169 to 26769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,963 DEBUG Processing 179/831 atomic regions from SNP 53578 to 54179 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,045 DEBUG Processing 173/853 atomic regions from SNP 51700 to 52300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,067 DEBUG Processing 87/461 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:32,108 DEBUG Processing 108/996 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,139 DEBUG Processing 89/1108 atomic regions from SNP 26469 to 27069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,209 DEBUG Processing 180/831 atomic regions from SNP 53879 to 54480 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,264 DEBUG Processing 174/853 atomic regions from SNP 52000 to 52600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,282 DEBUG Processing 88/461 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:32,349 DEBUG Processing 109/996 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,386 DEBUG Processing 90/1108 atomic regions from SNP 26769 to 27369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,439 DEBUG Processing 181/831 atomic regions from SNP 54180 to 54781 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,477 DEBUG Processing 175/853 atomic regions from SNP 52300 to 52900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,494 DEBUG Processing 89/461 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:32,588 DEBUG Processing 110/996 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,635 DEBUG Processing 91/1108 atomic regions from SNP 27069 to 27669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,673 DEBUG Processing 182/831 atomic regions from SNP 54481 to 55082 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,694 DEBUG Processing 176/853 atomic regions from SNP 52600 to 53200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,706 DEBUG Processing 90/461 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:32,829 DEBUG Processing 111/996 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,890 DEBUG Processing 92/1108 atomic regions from SNP 27369 to 27969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,897 DEBUG Processing 183/831 atomic regions from SNP 54782 to 55383 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,916 DEBUG Processing 91/461 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:32,916 DEBUG Processing 177/853 atomic regions from SNP 52900 to 53500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,082 DEBUG Processing 112/996 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,127 DEBUG Processing 184/831 atomic regions from SNP 55083 to 55684 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,146 DEBUG Processing 178/853 atomic regions from SNP 53200 to 53800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,147 DEBUG Processing 92/461 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:33,154 DEBUG Processing 93/1108 atomic regions from SNP 27669 to 28269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,358 DEBUG Processing 113/996 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,420 DEBUG Processing 185/831 atomic regions from SNP 55384 to 55985 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,431 DEBUG Processing 93/461 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:33,435 DEBUG Processing 179/853 atomic regions from SNP 53500 to 54100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,475 DEBUG Processing 94/1108 atomic regions from SNP 27969 to 28569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,624 DEBUG Processing 114/996 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,672 DEBUG Processing 186/831 atomic regions from SNP 55685 to 56286 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,681 DEBUG Processing 94/461 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:33,692 DEBUG Processing 180/853 atomic regions from SNP 53800 to 54400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,756 DEBUG Processing 95/1108 atomic regions from SNP 28269 to 28869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,887 DEBUG Processing 115/996 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,895 DEBUG Processing 187/831 atomic regions from SNP 55986 to 56587 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,901 DEBUG Processing 95/461 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:33,931 DEBUG Processing 181/853 atomic regions from SNP 54100 to 54700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,023 DEBUG Processing 96/1108 atomic regions from SNP 28569 to 29169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,169 DEBUG Processing 96/461 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:34,174 DEBUG Processing 188/831 atomic regions from SNP 56287 to 56888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,200 DEBUG Processing 116/996 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,206 DEBUG Processing 182/853 atomic regions from SNP 54400 to 55000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,298 DEBUG Processing 97/1108 atomic regions from SNP 28869 to 29469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,391 DEBUG Processing 97/461 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:34,399 DEBUG Processing 189/831 atomic regions from SNP 56588 to 57189 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,432 DEBUG Processing 183/853 atomic regions from SNP 54700 to 55300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,453 DEBUG Processing 117/996 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,640 DEBUG Processing 98/461 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:34,645 DEBUG Processing 98/1108 atomic regions from SNP 29169 to 29769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,654 DEBUG Processing 190/831 atomic regions from SNP 56889 to 57490 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,674 DEBUG Processing 184/853 atomic regions from SNP 55000 to 55600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,708 DEBUG Processing 118/996 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,865 DEBUG Processing 99/461 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:34,892 DEBUG Processing 191/831 atomic regions from SNP 57190 to 57791 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,910 DEBUG Processing 99/1108 atomic regions from SNP 29469 to 30069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,911 DEBUG Processing 185/853 atomic regions from SNP 55300 to 55900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,957 DEBUG Processing 119/996 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,175 DEBUG Processing 100/461 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:35,226 DEBUG Processing 192/831 atomic regions from SNP 57491 to 58092 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,252 DEBUG Processing 186/853 atomic regions from SNP 55600 to 56200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,294 DEBUG Processing 100/1108 atomic regions from SNP 29769 to 30369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,310 DEBUG Processing 120/996 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,407 DEBUG Processing 101/461 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:35,498 DEBUG Processing 193/831 atomic regions from SNP 57792 to 58393 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,568 DEBUG Processing 187/853 atomic regions from SNP 55900 to 56500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,667 DEBUG Processing 101/1108 atomic regions from SNP 30069 to 30669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,678 DEBUG Processing 121/996 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,696 DEBUG Processing 102/461 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:35,749 DEBUG Processing 194/831 atomic regions from SNP 58093 to 58694 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,789 DEBUG Processing 188/853 atomic regions from SNP 56200 to 56800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,931 DEBUG Processing 103/461 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:35,932 DEBUG Processing 122/996 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,933 DEBUG Processing 102/1108 atomic regions from SNP 30369 to 30969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,976 DEBUG Processing 195/831 atomic regions from SNP 58394 to 58995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,011 DEBUG Processing 189/853 atomic regions from SNP 56500 to 57100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,153 DEBUG Processing 104/461 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:36,182 DEBUG Processing 123/996 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,188 DEBUG Processing 103/1108 atomic regions from SNP 30669 to 31269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:36,201 DEBUG Processing 196/831 atomic regions from SNP 58695 to 59296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,234 DEBUG Processing 190/853 atomic regions from SNP 56800 to 57400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,410 DEBUG Processing 105/461 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:36,483 DEBUG Processing 124/996 atomic regions from SNP 37023 to 37624 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,488 DEBUG Processing 197/831 atomic regions from SNP 58996 to 59597 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,503 DEBUG Processing 104/1108 atomic regions from SNP 30969 to 31569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:36,555 DEBUG Processing 191/853 atomic regions from SNP 57100 to 57700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,647 DEBUG Processing 106/461 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:36,707 DEBUG Processing 198/831 atomic regions from SNP 59297 to 59898 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,743 DEBUG Processing 125/996 atomic regions from SNP 37324 to 37925 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,757 DEBUG Processing 105/1108 atomic regions from SNP 31269 to 31869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:36,788 DEBUG Processing 192/853 atomic regions from SNP 57400 to 58000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,867 DEBUG Processing 107/461 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:36,928 DEBUG Processing 199/831 atomic regions from SNP 59598 to 60199 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,015 DEBUG Processing 106/1108 atomic regions from SNP 31569 to 32169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,022 DEBUG Processing 193/853 atomic regions from SNP 57700 to 58300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,025 DEBUG Processing 126/996 atomic regions from SNP 37625 to 38226 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,168 DEBUG Processing 108/461 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:37,300 DEBUG Processing 200/831 atomic regions from SNP 59899 to 60500 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,359 DEBUG Processing 194/853 atomic regions from SNP 58000 to 58600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,367 DEBUG Processing 107/1108 atomic regions from SNP 31869 to 32469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,408 DEBUG Processing 127/996 atomic regions from SNP 37926 to 38527 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,473 DEBUG Processing 109/461 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:37,611 DEBUG Processing 201/831 atomic regions from SNP 60200 to 60801 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,688 DEBUG Processing 195/853 atomic regions from SNP 58300 to 58900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,738 DEBUG Processing 108/1108 atomic regions from SNP 32169 to 32769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,746 DEBUG Processing 110/461 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:37,763 DEBUG Processing 128/996 atomic regions from SNP 38227 to 38828 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,945 DEBUG Processing 202/831 atomic regions from SNP 60501 to 61102 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,014 DEBUG Processing 196/853 atomic regions from SNP 58600 to 59200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,093 DEBUG Processing 111/461 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:38,106 DEBUG Processing 109/1108 atomic regions from SNP 32469 to 33069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,138 DEBUG Processing 129/996 atomic regions from SNP 38528 to 39129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,279 DEBUG Processing 203/831 atomic regions from SNP 60802 to 61403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,345 DEBUG Processing 197/853 atomic regions from SNP 58900 to 59500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,434 DEBUG Processing 112/461 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:38,517 DEBUG Processing 110/1108 atomic regions from SNP 32769 to 33369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,527 DEBUG Processing 130/996 atomic regions from SNP 38829 to 39430 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,664 DEBUG Processing 204/831 atomic regions from SNP 61103 to 61704 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,709 DEBUG Processing 198/853 atomic regions from SNP 59200 to 59800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,737 DEBUG Processing 113/461 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:38,810 DEBUG Processing 131/996 atomic regions from SNP 39130 to 39731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,811 DEBUG Processing 111/1108 atomic regions from SNP 33069 to 33669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,947 DEBUG Processing 205/831 atomic regions from SNP 61404 to 62005 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,028 DEBUG Processing 199/853 atomic regions from SNP 59500 to 60100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,062 DEBUG Processing 114/461 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:39,160 DEBUG Processing 112/1108 atomic regions from SNP 33369 to 33969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,172 DEBUG Processing 132/996 atomic regions from SNP 39431 to 40032 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,274 DEBUG Processing 206/831 atomic regions from SNP 61705 to 62306 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,351 DEBUG Processing 200/853 atomic regions from SNP 59800 to 60400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,365 DEBUG Processing 115/461 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:39,555 DEBUG Processing 133/996 atomic regions from SNP 39732 to 40333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,559 DEBUG Processing 207/831 atomic regions from SNP 62006 to 62607 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,564 DEBUG Processing 113/1108 atomic regions from SNP 33669 to 34269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,670 DEBUG Processing 201/853 atomic regions from SNP 60100 to 60700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,678 DEBUG Processing 116/461 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:39,826 DEBUG Processing 208/831 atomic regions from SNP 62307 to 62908 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,848 DEBUG Processing 134/996 atomic regions from SNP 40033 to 40634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,863 DEBUG Processing 114/1108 atomic regions from SNP 33969 to 34569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,968 DEBUG Processing 202/853 atomic regions from SNP 60400 to 61000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,970 DEBUG Processing 117/461 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:40,080 DEBUG Processing 209/831 atomic regions from SNP 62608 to 63209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,172 DEBUG Processing 115/1108 atomic regions from SNP 34269 to 34869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,180 DEBUG Processing 135/996 atomic regions from SNP 40334 to 40935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,273 DEBUG Processing 118/461 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:40,277 DEBUG Processing 203/853 atomic regions from SNP 60700 to 61300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,329 DEBUG Processing 210/831 atomic regions from SNP 62909 to 63510 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,429 DEBUG Processing 116/1108 atomic regions from SNP 34569 to 35169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,442 DEBUG Processing 136/996 atomic regions from SNP 40635 to 41236 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,551 DEBUG Processing 119/461 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:40,557 DEBUG Processing 204/853 atomic regions from SNP 61000 to 61600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,607 DEBUG Processing 211/831 atomic regions from SNP 63210 to 63811 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,700 DEBUG Processing 117/1108 atomic regions from SNP 34869 to 35469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,711 DEBUG Processing 137/996 atomic regions from SNP 40936 to 41537 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,765 DEBUG Processing 120/461 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:40,782 DEBUG Processing 205/853 atomic regions from SNP 61300 to 61900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,843 DEBUG Processing 212/831 atomic regions from SNP 63511 to 64112 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,973 DEBUG Processing 118/1108 atomic regions from SNP 35169 to 35769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,025 DEBUG Processing 138/996 atomic regions from SNP 41237 to 41838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,042 DEBUG Processing 121/461 atomic regions from SNP 36120 to 36720 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:41,074 DEBUG Processing 206/853 atomic regions from SNP 61600 to 62200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,107 DEBUG Processing 213/831 atomic regions from SNP 63812 to 64413 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,304 DEBUG Processing 119/1108 atomic regions from SNP 35469 to 36069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,357 DEBUG Processing 122/461 atomic regions from SNP 36420 to 37020 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:41,359 DEBUG Processing 139/996 atomic regions from SNP 41538 to 42139 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,396 DEBUG Processing 207/853 atomic regions from SNP 61900 to 62500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,431 DEBUG Processing 214/831 atomic regions from SNP 64113 to 64714 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,650 DEBUG Processing 120/1108 atomic regions from SNP 35769 to 36369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,663 DEBUG Processing 123/461 atomic regions from SNP 36720 to 37320 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:41,691 DEBUG Processing 208/853 atomic regions from SNP 62200 to 62800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,695 DEBUG Processing 140/996 atomic regions from SNP 41839 to 42440 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,720 DEBUG Processing 215/831 atomic regions from SNP 64414 to 65015 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,947 DEBUG Processing 121/1108 atomic regions from SNP 36069 to 36669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,952 DEBUG Processing 124/461 atomic regions from SNP 37020 to 37620 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:41,985 DEBUG Processing 209/853 atomic regions from SNP 62500 to 63100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,019 DEBUG Processing 216/831 atomic regions from SNP 64715 to 65316 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,044 DEBUG Processing 141/996 atomic regions from SNP 42140 to 42741 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,286 DEBUG Processing 125/461 atomic regions from SNP 37320 to 37920 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:42,309 DEBUG Processing 122/1108 atomic regions from SNP 36369 to 36969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,328 DEBUG Processing 210/853 atomic regions from SNP 62800 to 63400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,359 DEBUG Processing 217/831 atomic regions from SNP 65016 to 65617 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,421 DEBUG Processing 142/996 atomic regions from SNP 42441 to 43042 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,619 DEBUG Processing 126/461 atomic regions from SNP 37620 to 38220 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:42,633 DEBUG Segmenting atomic regions: 2025-01-31 09:41:42,654 DEBUG Processing 211/853 atomic regions from SNP 63100 to 63700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,678 DEBUG Processing 123/1108 atomic regions from SNP 36669 to 37269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,683 DEBUG Processing 218/831 atomic regions from SNP 65317 to 65918 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,742 DEBUG Processing 1/630 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:42,795 DEBUG Processing 143/996 atomic regions from SNP 42742 to 43343 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,967 DEBUG Processing 127/461 atomic regions from SNP 37920 to 38520 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:42,992 DEBUG Processing 212/853 atomic regions from SNP 63400 to 64000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,011 DEBUG Processing 219/831 atomic regions from SNP 65618 to 66219 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,050 DEBUG Processing 124/1108 atomic regions from SNP 36969 to 37569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,056 DEBUG Processing 2/630 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:43,105 DEBUG Processing 144/996 atomic regions from SNP 43043 to 43644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,249 DEBUG Processing 128/461 atomic regions from SNP 38220 to 38820 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:43,253 DEBUG Processing 213/853 atomic regions from SNP 63700 to 64300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,281 DEBUG Processing 220/831 atomic regions from SNP 65919 to 66520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,323 DEBUG Processing 3/630 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:43,335 DEBUG Processing 125/1108 atomic regions from SNP 37269 to 37869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,371 DEBUG Processing 145/996 atomic regions from SNP 43344 to 43945 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,552 DEBUG Processing 129/461 atomic regions from SNP 38520 to 39120 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:43,563 DEBUG Processing 214/853 atomic regions from SNP 64000 to 64600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,621 DEBUG Processing 221/831 atomic regions from SNP 66220 to 66821 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,643 DEBUG Processing 4/630 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:43,677 DEBUG Processing 126/1108 atomic regions from SNP 37569 to 38169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,677 DEBUG Processing 146/996 atomic regions from SNP 43645 to 44246 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,772 DEBUG Processing 130/461 atomic regions from SNP 38820 to 39420 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:43,784 DEBUG Processing 215/853 atomic regions from SNP 64300 to 64900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,895 DEBUG Processing 222/831 atomic regions from SNP 66521 to 67122 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,979 DEBUG Processing 5/630 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:44,027 DEBUG Processing 127/1108 atomic regions from SNP 37869 to 38469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,029 DEBUG Processing 147/996 atomic regions from SNP 43946 to 44547 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,033 DEBUG Processing 131/461 atomic regions from SNP 39120 to 39720 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:44,063 DEBUG Processing 216/853 atomic regions from SNP 64600 to 65200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,142 DEBUG Processing 223/831 atomic regions from SNP 66822 to 67423 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,231 DEBUG Processing 6/630 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:44,262 DEBUG Processing 132/461 atomic regions from SNP 39420 to 40020 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:44,285 DEBUG Processing 128/1108 atomic regions from SNP 38169 to 38769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,298 DEBUG Processing 217/853 atomic regions from SNP 64900 to 65500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,309 DEBUG Processing 148/996 atomic regions from SNP 44247 to 44848 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,365 DEBUG Processing 224/831 atomic regions from SNP 67123 to 67724 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,457 DEBUG Processing 7/630 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:44,481 DEBUG Processing 133/461 atomic regions from SNP 39720 to 40320 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:44,521 DEBUG Processing 218/853 atomic regions from SNP 65200 to 65800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,544 DEBUG Processing 129/1108 atomic regions from SNP 38469 to 39069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,583 DEBUG Processing 149/996 atomic regions from SNP 44548 to 45149 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,584 DEBUG Processing 225/831 atomic regions from SNP 67424 to 68025 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,677 DEBUG Processing 8/630 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:44,693 DEBUG Processing 134/461 atomic regions from SNP 40020 to 40620 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:44,750 DEBUG Processing 219/853 atomic regions from SNP 65500 to 66100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,807 DEBUG Processing 130/1108 atomic regions from SNP 38769 to 39369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,808 DEBUG Processing 226/831 atomic regions from SNP 67725 to 68326 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,836 DEBUG Processing 150/996 atomic regions from SNP 44849 to 45450 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,898 DEBUG Processing 135/461 atomic regions from SNP 40320 to 40920 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:44,912 DEBUG Processing 9/630 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:44,976 DEBUG Processing 220/853 atomic regions from SNP 65800 to 66400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,032 DEBUG Processing 227/831 atomic regions from SNP 68026 to 68627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,067 DEBUG Processing 131/1108 atomic regions from SNP 39069 to 39669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,081 DEBUG Processing 151/996 atomic regions from SNP 45150 to 45751 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,102 DEBUG Processing 136/461 atomic regions from SNP 40620 to 41220 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:45,152 DEBUG Processing 10/630 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,204 DEBUG Processing 221/853 atomic regions from SNP 66100 to 66700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,265 DEBUG Processing 228/831 atomic regions from SNP 68327 to 68928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,313 DEBUG Processing 137/461 atomic regions from SNP 40920 to 41520 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:45,328 DEBUG Processing 132/1108 atomic regions from SNP 39369 to 39969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,329 DEBUG Processing 152/996 atomic regions from SNP 45451 to 46052 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,372 DEBUG Processing 11/630 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,426 DEBUG Processing 222/853 atomic regions from SNP 66400 to 67000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,488 DEBUG Processing 229/831 atomic regions from SNP 68628 to 69229 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,525 DEBUG Processing 138/461 atomic regions from SNP 41220 to 41820 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:45,577 DEBUG Processing 153/996 atomic regions from SNP 45752 to 46353 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,588 DEBUG Processing 133/1108 atomic regions from SNP 39669 to 40269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,596 DEBUG Processing 12/630 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,650 DEBUG Processing 223/853 atomic regions from SNP 66700 to 67300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,714 DEBUG Processing 230/831 atomic regions from SNP 68929 to 69530 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,739 DEBUG Processing 139/461 atomic regions from SNP 41520 to 42120 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:45,821 DEBUG Processing 13/630 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,833 DEBUG Processing 154/996 atomic regions from SNP 46053 to 46654 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,845 DEBUG Processing 134/1108 atomic regions from SNP 39969 to 40569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,871 DEBUG Processing 224/853 atomic regions from SNP 67000 to 67600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,935 DEBUG Processing 231/831 atomic regions from SNP 69230 to 69831 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,956 DEBUG Processing 140/461 atomic regions from SNP 41820 to 42420 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:46,059 DEBUG Processing 14/630 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,103 DEBUG Processing 155/996 atomic regions from SNP 46354 to 46955 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,107 DEBUG Processing 135/1108 atomic regions from SNP 40269 to 40869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,108 DEBUG Processing 225/853 atomic regions from SNP 67300 to 67900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,170 DEBUG Processing 232/831 atomic regions from SNP 69531 to 70132 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,181 DEBUG Processing 141/461 atomic regions from SNP 42120 to 42720 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:46,290 DEBUG Processing 15/630 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,328 DEBUG Processing 226/853 atomic regions from SNP 67600 to 68200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,360 DEBUG Processing 136/1108 atomic regions from SNP 40569 to 41169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,366 DEBUG Processing 156/996 atomic regions from SNP 46655 to 47256 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,387 DEBUG Processing 233/831 atomic regions from SNP 69832 to 70433 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,394 DEBUG Processing 142/461 atomic regions from SNP 42420 to 43020 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:46,509 DEBUG Processing 16/630 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,553 DEBUG Processing 227/853 atomic regions from SNP 67900 to 68500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,611 DEBUG Processing 143/461 atomic regions from SNP 42720 to 43320 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:46,611 DEBUG Processing 234/831 atomic regions from SNP 70133 to 70734 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,622 DEBUG Processing 137/1108 atomic regions from SNP 40869 to 41469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,641 DEBUG Processing 157/996 atomic regions from SNP 46956 to 47557 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,729 DEBUG Processing 17/630 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,770 DEBUG Processing 228/853 atomic regions from SNP 68200 to 68800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,830 DEBUG Processing 144/461 atomic regions from SNP 43020 to 43620 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:46,833 DEBUG Processing 235/831 atomic regions from SNP 70434 to 71035 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,878 DEBUG Processing 138/1108 atomic regions from SNP 41169 to 41769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,917 DEBUG Processing 158/996 atomic regions from SNP 47257 to 47858 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,944 DEBUG Processing 18/630 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,991 DEBUG Processing 229/853 atomic regions from SNP 68500 to 69100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,047 DEBUG Processing 145/461 atomic regions from SNP 43320 to 43920 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:47,053 DEBUG Processing 236/831 atomic regions from SNP 70735 to 71336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,131 DEBUG Processing 139/1108 atomic regions from SNP 41469 to 42069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,165 DEBUG Processing 19/630 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,177 DEBUG Processing 159/996 atomic regions from SNP 47558 to 48159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,210 DEBUG Processing 230/853 atomic regions from SNP 68800 to 69400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,254 DEBUG Processing 146/461 atomic regions from SNP 43620 to 44220 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:47,266 DEBUG Processing 237/831 atomic regions from SNP 71036 to 71637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,380 DEBUG Processing 140/1108 atomic regions from SNP 41769 to 42369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,390 DEBUG Processing 20/630 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,427 DEBUG Processing 231/853 atomic regions from SNP 69100 to 69700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,433 DEBUG Processing 160/996 atomic regions from SNP 47859 to 48459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,463 DEBUG Processing 147/461 atomic regions from SNP 43920 to 44520 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:47,484 DEBUG Processing 238/831 atomic regions from SNP 71337 to 71938 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,617 DEBUG Processing 21/630 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,632 DEBUG Processing 141/1108 atomic regions from SNP 42069 to 42669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,646 DEBUG Processing 232/853 atomic regions from SNP 69400 to 70000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,681 DEBUG Processing 148/461 atomic regions from SNP 44220 to 44820 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:47,682 DEBUG Processing 161/996 atomic regions from SNP 48159 to 48759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,701 DEBUG Processing 239/831 atomic regions from SNP 71638 to 72239 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,841 DEBUG Processing 22/630 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,872 DEBUG Processing 233/853 atomic regions from SNP 69700 to 70300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,889 DEBUG Processing 142/1108 atomic regions from SNP 42369 to 42969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,898 DEBUG Processing 149/461 atomic regions from SNP 44520 to 45120 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:47,923 DEBUG Processing 240/831 atomic regions from SNP 71939 to 72540 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,951 DEBUG Processing 162/996 atomic regions from SNP 48459 to 49059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,066 DEBUG Processing 23/630 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,093 DEBUG Processing 234/853 atomic regions from SNP 70000 to 70600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,114 DEBUG Processing 150/461 atomic regions from SNP 44820 to 45420 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:48,143 DEBUG Processing 241/831 atomic regions from SNP 72240 to 72841 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,147 DEBUG Processing 143/1108 atomic regions from SNP 42669 to 43269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,216 DEBUG Processing 163/996 atomic regions from SNP 48759 to 49359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,298 DEBUG Processing 24/630 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,310 DEBUG Processing 235/853 atomic regions from SNP 70300 to 70900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,326 DEBUG Processing 151/461 atomic regions from SNP 45120 to 45720 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:48,364 DEBUG Processing 242/831 atomic regions from SNP 72541 to 73142 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,402 DEBUG Processing 144/1108 atomic regions from SNP 42969 to 43569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,466 DEBUG Processing 164/996 atomic regions from SNP 49059 to 49659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,516 DEBUG Processing 25/630 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,527 DEBUG Processing 236/853 atomic regions from SNP 70600 to 71200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,532 DEBUG Processing 152/461 atomic regions from SNP 45420 to 46020 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:48,579 DEBUG Processing 243/831 atomic regions from SNP 72842 to 73443 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,650 DEBUG Processing 145/1108 atomic regions from SNP 43269 to 43869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,703 DEBUG Processing 165/996 atomic regions from SNP 49359 to 49959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,731 DEBUG Processing 26/630 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,737 DEBUG Processing 153/461 atomic regions from SNP 45720 to 46320 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:48,740 DEBUG Processing 237/853 atomic regions from SNP 70900 to 71500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,791 DEBUG Processing 244/831 atomic regions from SNP 73143 to 73744 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,898 DEBUG Processing 146/1108 atomic regions from SNP 43569 to 44169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,940 DEBUG Processing 166/996 atomic regions from SNP 49659 to 50259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,945 DEBUG Processing 154/461 atomic regions from SNP 46020 to 46620 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:48,946 DEBUG Processing 27/630 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,955 DEBUG Processing 238/853 atomic regions from SNP 71200 to 71800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,001 DEBUG Processing 245/831 atomic regions from SNP 73444 to 74045 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,149 DEBUG Processing 147/1108 atomic regions from SNP 43869 to 44469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,157 DEBUG Processing 155/461 atomic regions from SNP 46320 to 46920 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:49,165 DEBUG Processing 28/630 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,172 DEBUG Processing 239/853 atomic regions from SNP 71500 to 72100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,193 DEBUG Processing 167/996 atomic regions from SNP 49959 to 50559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,216 DEBUG Processing 246/831 atomic regions from SNP 73745 to 74346 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,368 DEBUG Processing 156/461 atomic regions from SNP 46620 to 47220 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:49,384 DEBUG Processing 29/630 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,388 DEBUG Processing 240/853 atomic regions from SNP 71800 to 72400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,398 DEBUG Processing 148/1108 atomic regions from SNP 44169 to 44769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,430 DEBUG Processing 247/831 atomic regions from SNP 74046 to 74647 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,452 DEBUG Processing 168/996 atomic regions from SNP 50259 to 50859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,577 DEBUG Processing 157/461 atomic regions from SNP 46920 to 47520 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:49,604 DEBUG Processing 30/630 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,607 DEBUG Processing 241/853 atomic regions from SNP 72100 to 72700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,644 DEBUG Processing 248/831 atomic regions from SNP 74347 to 74948 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,650 DEBUG Processing 149/1108 atomic regions from SNP 44469 to 45069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,691 DEBUG Processing 169/996 atomic regions from SNP 50559 to 51159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,784 DEBUG Processing 158/461 atomic regions from SNP 47220 to 47820 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:49,830 DEBUG Processing 31/630 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,834 DEBUG Processing 242/853 atomic regions from SNP 72400 to 73000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,866 DEBUG Processing 249/831 atomic regions from SNP 74648 to 75249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,907 DEBUG Processing 150/1108 atomic regions from SNP 44769 to 45369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,941 DEBUG Processing 170/996 atomic regions from SNP 50859 to 51459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,989 DEBUG Processing 159/461 atomic regions from SNP 47520 to 48120 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:50,051 DEBUG Processing 32/630 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,052 DEBUG Processing 243/853 atomic regions from SNP 72700 to 73300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,084 DEBUG Processing 250/831 atomic regions from SNP 74949 to 75550 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,159 DEBUG Processing 151/1108 atomic regions from SNP 45069 to 45669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,194 DEBUG Processing 160/461 atomic regions from SNP 47820 to 48420 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:50,212 DEBUG Processing 171/996 atomic regions from SNP 51159 to 51759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,273 DEBUG Processing 244/853 atomic regions from SNP 73000 to 73600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,276 DEBUG Processing 33/630 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,303 DEBUG Processing 251/831 atomic regions from SNP 75250 to 75851 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,402 DEBUG Processing 161/461 atomic regions from SNP 48120 to 48720 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:50,409 DEBUG Processing 152/1108 atomic regions from SNP 45369 to 45969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,482 DEBUG Processing 172/996 atomic regions from SNP 51459 to 52059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,489 DEBUG Processing 245/853 atomic regions from SNP 73300 to 73900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,503 DEBUG Processing 34/630 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,520 DEBUG Processing 252/831 atomic regions from SNP 75551 to 76152 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,613 DEBUG Processing 162/461 atomic regions from SNP 48420 to 49020 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:50,660 DEBUG Processing 153/1108 atomic regions from SNP 45669 to 46269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,710 DEBUG Processing 246/853 atomic regions from SNP 73600 to 74200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,725 DEBUG Processing 35/630 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,739 DEBUG Processing 253/831 atomic regions from SNP 75852 to 76453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,752 DEBUG Processing 173/996 atomic regions from SNP 51759 to 52359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,815 DEBUG Processing 163/461 atomic regions from SNP 48720 to 49320 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:50,908 DEBUG Processing 154/1108 atomic regions from SNP 45969 to 46569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,929 DEBUG Processing 247/853 atomic regions from SNP 73900 to 74500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,951 DEBUG Processing 36/630 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,962 DEBUG Processing 254/831 atomic regions from SNP 76153 to 76754 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,021 DEBUG Processing 164/461 atomic regions from SNP 49020 to 49620 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:51,026 DEBUG Processing 174/996 atomic regions from SNP 52059 to 52659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,149 DEBUG Processing 248/853 atomic regions from SNP 74200 to 74800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,159 DEBUG Processing 155/1108 atomic regions from SNP 46269 to 46869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,175 DEBUG Processing 37/630 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,185 DEBUG Processing 255/831 atomic regions from SNP 76454 to 77055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,231 DEBUG Processing 165/461 atomic regions from SNP 49320 to 49920 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:51,293 DEBUG Processing 175/996 atomic regions from SNP 52359 to 52959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,399 DEBUG Processing 249/853 atomic regions from SNP 74500 to 75100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,404 DEBUG Processing 38/630 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,418 DEBUG Processing 156/1108 atomic regions from SNP 46569 to 47169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,421 DEBUG Processing 256/831 atomic regions from SNP 76755 to 77356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,462 DEBUG Processing 166/461 atomic regions from SNP 49620 to 50220 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:51,574 DEBUG Processing 176/996 atomic regions from SNP 52659 to 53259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,638 DEBUG Processing 39/630 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,656 DEBUG Processing 257/831 atomic regions from SNP 77056 to 77657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,660 DEBUG Processing 250/853 atomic regions from SNP 74800 to 75400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,683 DEBUG Processing 157/1108 atomic regions from SNP 46869 to 47469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,684 DEBUG Processing 167/461 atomic regions from SNP 49920 to 50520 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:51,832 DEBUG Processing 177/996 atomic regions from SNP 52959 to 53559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,870 DEBUG Processing 40/630 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,888 DEBUG Processing 258/831 atomic regions from SNP 77357 to 77958 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,905 DEBUG Processing 168/461 atomic regions from SNP 50220 to 50820 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:51,912 DEBUG Processing 251/853 atomic regions from SNP 75100 to 75700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,952 DEBUG Processing 158/1108 atomic regions from SNP 47169 to 47769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,074 DEBUG Processing 178/996 atomic regions from SNP 53259 to 53859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,094 DEBUG Processing 41/630 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,116 DEBUG Processing 259/831 atomic regions from SNP 77658 to 78259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,121 DEBUG Processing 169/461 atomic regions from SNP 50520 to 51120 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:52,157 DEBUG Processing 252/853 atomic regions from SNP 75400 to 76000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,208 DEBUG Processing 159/1108 atomic regions from SNP 47469 to 48069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,317 DEBUG Processing 179/996 atomic regions from SNP 53559 to 54159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,325 DEBUG Processing 42/630 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,335 DEBUG Processing 170/461 atomic regions from SNP 50820 to 51420 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:52,341 DEBUG Processing 260/831 atomic regions from SNP 77959 to 78560 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,390 DEBUG Processing 253/853 atomic regions from SNP 75700 to 76300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,467 DEBUG Processing 160/1108 atomic regions from SNP 47769 to 48369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,552 DEBUG Processing 171/461 atomic regions from SNP 51120 to 51720 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:52,555 DEBUG Processing 43/630 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,562 DEBUG Processing 180/996 atomic regions from SNP 53859 to 54459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,569 DEBUG Processing 261/831 atomic regions from SNP 78260 to 78861 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,616 DEBUG Processing 254/853 atomic regions from SNP 76000 to 76600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,734 DEBUG Processing 161/1108 atomic regions from SNP 48069 to 48669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,783 DEBUG Processing 172/461 atomic regions from SNP 51420 to 52020 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:52,794 DEBUG Processing 44/630 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,802 DEBUG Processing 262/831 atomic regions from SNP 78561 to 79162 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,830 DEBUG Processing 181/996 atomic regions from SNP 54159 to 54759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,847 DEBUG Processing 255/853 atomic regions from SNP 76300 to 76900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,036 DEBUG Processing 162/1108 atomic regions from SNP 48369 to 48969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,061 DEBUG Processing 173/461 atomic regions from SNP 51720 to 52320 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:53,065 DEBUG Processing 263/831 atomic regions from SNP 78862 to 79463 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,066 DEBUG Processing 45/630 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,132 DEBUG Processing 256/853 atomic regions from SNP 76600 to 77200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,151 DEBUG Processing 182/996 atomic regions from SNP 54459 to 55059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,314 DEBUG Processing 163/1108 atomic regions from SNP 48669 to 49269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,335 DEBUG Processing 174/461 atomic regions from SNP 52020 to 52620 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:53,340 DEBUG Processing 264/831 atomic regions from SNP 79163 to 79764 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,363 DEBUG Processing 46/630 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,472 DEBUG Processing 257/853 atomic regions from SNP 76900 to 77500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,549 DEBUG Processing 183/996 atomic regions from SNP 54759 to 55359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,741 DEBUG Processing 175/461 atomic regions from SNP 52320 to 52920 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:53,754 DEBUG Processing 265/831 atomic regions from SNP 79464 to 80065 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,764 DEBUG Processing 164/1108 atomic regions from SNP 48969 to 49569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,767 DEBUG Processing 47/630 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,815 DEBUG Processing 258/853 atomic regions from SNP 77200 to 77800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,968 DEBUG Processing 184/996 atomic regions from SNP 55059 to 55659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,084 DEBUG Processing 176/461 atomic regions from SNP 52620 to 53220 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:54,119 DEBUG Processing 266/831 atomic regions from SNP 79765 to 80366 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,126 DEBUG Processing 48/630 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,140 DEBUG Processing 259/853 atomic regions from SNP 77500 to 78100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,160 DEBUG Processing 165/1108 atomic regions from SNP 49269 to 49869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,253 DEBUG Processing 185/996 atomic regions from SNP 55359 to 55959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,442 DEBUG Processing 177/461 atomic regions from SNP 52920 to 53520 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:54,500 DEBUG Processing 260/853 atomic regions from SNP 77800 to 78400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,504 DEBUG Processing 267/831 atomic regions from SNP 80066 to 80667 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,509 DEBUG Processing 49/630 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,558 DEBUG Processing 166/1108 atomic regions from SNP 49569 to 50169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,608 DEBUG Processing 186/996 atomic regions from SNP 55659 to 56259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,806 DEBUG Processing 178/461 atomic regions from SNP 53220 to 53820 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:54,878 DEBUG Processing 261/853 atomic regions from SNP 78100 to 78700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,884 DEBUG Processing 268/831 atomic regions from SNP 80367 to 80968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,891 DEBUG Processing 50/630 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,970 DEBUG Processing 167/1108 atomic regions from SNP 49869 to 50469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,993 DEBUG Processing 187/996 atomic regions from SNP 55959 to 56559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,047 DEBUG Processing 179/461 atomic regions from SNP 53520 to 54120 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:55,133 DEBUG Processing 262/853 atomic regions from SNP 78400 to 79000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,145 DEBUG Processing 269/831 atomic regions from SNP 80668 to 81269 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,160 DEBUG Processing 51/630 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,289 DEBUG Processing 180/461 atomic regions from SNP 53820 to 54420 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:55,316 DEBUG Processing 168/1108 atomic regions from SNP 50169 to 50769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,333 DEBUG Processing 188/996 atomic regions from SNP 56259 to 56859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,403 DEBUG Processing 263/853 atomic regions from SNP 78700 to 79300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,404 DEBUG Processing 270/831 atomic regions from SNP 80969 to 81570 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,416 DEBUG Processing 52/630 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,515 DEBUG Processing 181/461 atomic regions from SNP 54120 to 54720 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:55,584 DEBUG Processing 169/1108 atomic regions from SNP 50469 to 51069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,596 DEBUG Processing 189/996 atomic regions from SNP 56559 to 57159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,631 DEBUG Processing 271/831 atomic regions from SNP 81270 to 81871 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,632 DEBUG Processing 264/853 atomic regions from SNP 79000 to 79600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,648 DEBUG Processing 53/630 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,733 DEBUG Processing 182/461 atomic regions from SNP 54420 to 55020 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:55,851 DEBUG Processing 170/1108 atomic regions from SNP 50769 to 51369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,856 DEBUG Processing 190/996 atomic regions from SNP 56859 to 57459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,867 DEBUG Processing 272/831 atomic regions from SNP 81571 to 82172 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,869 DEBUG Processing 265/853 atomic regions from SNP 79300 to 79900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,890 DEBUG Processing 54/630 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,951 DEBUG Processing 183/461 atomic regions from SNP 54720 to 55320 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:56,100 DEBUG Processing 273/831 atomic regions from SNP 81872 to 82473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,104 DEBUG Processing 266/853 atomic regions from SNP 79600 to 80200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,123 DEBUG Processing 191/996 atomic regions from SNP 57159 to 57759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,127 DEBUG Processing 55/630 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,131 DEBUG Processing 171/1108 atomic regions from SNP 51069 to 51669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,164 DEBUG Processing 184/461 atomic regions from SNP 55020 to 55620 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:56,328 DEBUG Processing 274/831 atomic regions from SNP 82173 to 82774 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,339 DEBUG Processing 267/853 atomic regions from SNP 79900 to 80500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,363 DEBUG Processing 56/630 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,380 DEBUG Processing 192/996 atomic regions from SNP 57459 to 58059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,383 DEBUG Processing 185/461 atomic regions from SNP 55320 to 55920 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:56,418 DEBUG Processing 172/1108 atomic regions from SNP 51369 to 51969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,593 DEBUG Processing 275/831 atomic regions from SNP 82474 to 83075 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,616 DEBUG Processing 268/853 atomic regions from SNP 80200 to 80800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,680 DEBUG Processing 57/630 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,704 DEBUG Processing 186/461 atomic regions from SNP 55620 to 56220 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:56,724 DEBUG Processing 193/996 atomic regions from SNP 57759 to 58359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,783 DEBUG Processing 173/1108 atomic regions from SNP 51669 to 52269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,889 DEBUG Processing 276/831 atomic regions from SNP 82775 to 83376 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,923 DEBUG Processing 269/853 atomic regions from SNP 80500 to 81100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,024 DEBUG Processing 58/630 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,046 DEBUG Processing 187/461 atomic regions from SNP 55920 to 56520 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:57,098 DEBUG Processing 194/996 atomic regions from SNP 58059 to 58659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,189 DEBUG Processing 174/1108 atomic regions from SNP 51969 to 52569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,220 DEBUG Processing 277/831 atomic regions from SNP 83076 to 83677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,242 DEBUG Processing 270/853 atomic regions from SNP 80800 to 81400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,328 DEBUG Processing 59/630 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,330 DEBUG Processing 188/461 atomic regions from SNP 56220 to 56820 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:57,407 DEBUG Processing 195/996 atomic regions from SNP 58359 to 58959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,505 DEBUG Processing 175/1108 atomic regions from SNP 52269 to 52869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,516 DEBUG Processing 278/831 atomic regions from SNP 83377 to 83978 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,548 DEBUG Processing 271/853 atomic regions from SNP 81100 to 81700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,633 DEBUG Processing 189/461 atomic regions from SNP 56520 to 57120 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:57,636 DEBUG Processing 60/630 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,751 DEBUG Processing 196/996 atomic regions from SNP 58659 to 59259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,816 DEBUG Processing 279/831 atomic regions from SNP 83678 to 84279 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,838 DEBUG Processing 272/853 atomic regions from SNP 81400 to 82000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,850 DEBUG Processing 176/1108 atomic regions from SNP 52569 to 53169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,898 DEBUG Processing 61/630 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,901 DEBUG Processing 190/461 atomic regions from SNP 56820 to 57420 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:58,053 DEBUG Processing 197/996 atomic regions from SNP 58959 to 59559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,120 DEBUG Processing 280/831 atomic regions from SNP 83979 to 84580 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,169 DEBUG Processing 273/853 atomic regions from SNP 81700 to 82300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,205 DEBUG Processing 191/461 atomic regions from SNP 57120 to 57720 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:58,208 DEBUG Processing 62/630 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,239 DEBUG Processing 177/1108 atomic regions from SNP 52869 to 53469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,390 DEBUG Processing 198/996 atomic regions from SNP 59259 to 59859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,419 DEBUG Processing 281/831 atomic regions from SNP 84280 to 84881 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,441 DEBUG Processing 274/853 atomic regions from SNP 82000 to 82600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,469 DEBUG Processing 192/461 atomic regions from SNP 57420 to 58020 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:58,473 DEBUG Processing 63/630 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,524 DEBUG Processing 178/1108 atomic regions from SNP 53169 to 53769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,658 DEBUG Processing 199/996 atomic regions from SNP 59559 to 60159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,660 DEBUG Processing 282/831 atomic regions from SNP 84581 to 85182 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,680 DEBUG Processing 275/853 atomic regions from SNP 82300 to 82900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,718 DEBUG Processing 193/461 atomic regions from SNP 57720 to 58320 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:58,725 DEBUG Processing 64/630 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,800 DEBUG Processing 179/1108 atomic regions from SNP 53469 to 54069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,979 DEBUG Processing 283/831 atomic regions from SNP 84882 to 85483 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,994 DEBUG Processing 276/853 atomic regions from SNP 82600 to 83200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,999 DEBUG Processing 200/996 atomic regions from SNP 59859 to 60459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,015 DEBUG Processing 194/461 atomic regions from SNP 58020 to 58620 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:59,031 DEBUG Processing 65/630 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,106 DEBUG Processing 180/1108 atomic regions from SNP 53769 to 54369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,285 DEBUG Processing 284/831 atomic regions from SNP 85183 to 85784 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,312 DEBUG Processing 277/853 atomic regions from SNP 82900 to 83500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,335 DEBUG Processing 201/996 atomic regions from SNP 60159 to 60759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,335 DEBUG Processing 195/461 atomic regions from SNP 58320 to 58920 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:59,366 DEBUG Processing 66/630 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,480 DEBUG Processing 181/1108 atomic regions from SNP 54069 to 54669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,566 DEBUG Processing 285/831 atomic regions from SNP 85484 to 86085 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,611 DEBUG Processing 278/853 atomic regions from SNP 83200 to 83800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,638 DEBUG Processing 196/461 atomic regions from SNP 58620 to 59220 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:59,663 DEBUG Processing 202/996 atomic regions from SNP 60459 to 61059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,703 DEBUG Processing 67/630 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,889 DEBUG Processing 182/1108 atomic regions from SNP 54369 to 54969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,908 DEBUG Processing 286/831 atomic regions from SNP 85785 to 86386 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,920 DEBUG Processing 279/853 atomic regions from SNP 83500 to 84100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,930 DEBUG Processing 197/461 atomic regions from SNP 58920 to 59520 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:59,985 DEBUG Processing 203/996 atomic regions from SNP 60759 to 61359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,012 DEBUG Processing 68/630 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,257 DEBUG Processing 287/831 atomic regions from SNP 86086 to 86687 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,262 DEBUG Processing 198/461 atomic regions from SNP 59220 to 59820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:00,264 DEBUG Processing 280/853 atomic regions from SNP 83800 to 84400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,293 DEBUG Processing 183/1108 atomic regions from SNP 54669 to 55269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,338 DEBUG Processing 204/996 atomic regions from SNP 61059 to 61659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,350 DEBUG Processing 69/630 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,563 DEBUG Processing 288/831 atomic regions from SNP 86387 to 86988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,572 DEBUG Processing 199/461 atomic regions from SNP 59520 to 60120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:00,587 DEBUG Processing 281/853 atomic regions from SNP 84100 to 84700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,632 DEBUG Processing 70/630 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,651 DEBUG Processing 205/996 atomic regions from SNP 61359 to 61959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,664 DEBUG Processing 184/1108 atomic regions from SNP 54969 to 55569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,797 DEBUG Processing 289/831 atomic regions from SNP 86688 to 87289 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,811 DEBUG Processing 200/461 atomic regions from SNP 59820 to 60420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:00,827 DEBUG Processing 282/853 atomic regions from SNP 84400 to 85000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,868 DEBUG Processing 71/630 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,902 DEBUG Processing 206/996 atomic regions from SNP 61659 to 62259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,959 DEBUG Processing 185/1108 atomic regions from SNP 55269 to 55869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,048 DEBUG Processing 290/831 atomic regions from SNP 86989 to 87590 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,097 DEBUG Processing 201/461 atomic regions from SNP 60120 to 60720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:01,110 DEBUG Processing 283/853 atomic regions from SNP 84700 to 85300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,153 DEBUG Processing 72/630 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,200 DEBUG Processing 207/996 atomic regions from SNP 61959 to 62559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,263 DEBUG Processing 186/1108 atomic regions from SNP 55569 to 56169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,273 DEBUG Processing 291/831 atomic regions from SNP 87290 to 87891 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,357 DEBUG Processing 284/853 atomic regions from SNP 85000 to 85600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,361 DEBUG Processing 202/461 atomic regions from SNP 60420 to 61020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:01,433 DEBUG Processing 73/630 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,503 DEBUG Processing 208/996 atomic regions from SNP 62259 to 62859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,520 DEBUG Processing 292/831 atomic regions from SNP 87591 to 88192 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,553 DEBUG Processing 187/1108 atomic regions from SNP 55869 to 56469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,577 DEBUG Processing 285/853 atomic regions from SNP 85300 to 85900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,580 DEBUG Processing 203/461 atomic regions from SNP 60720 to 61320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:01,654 DEBUG Processing 74/630 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,804 DEBUG Processing 293/831 atomic regions from SNP 87892 to 88493 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,809 DEBUG Processing 209/996 atomic regions from SNP 62559 to 63159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,863 DEBUG Processing 286/853 atomic regions from SNP 85600 to 86200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,879 DEBUG Processing 204/461 atomic regions from SNP 61020 to 61620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:01,883 DEBUG Processing 188/1108 atomic regions from SNP 56169 to 56769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,942 DEBUG Processing 75/630 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,095 DEBUG Processing 294/831 atomic regions from SNP 88193 to 88794 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,137 DEBUG Processing 287/853 atomic regions from SNP 85900 to 86500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,146 DEBUG Processing 210/996 atomic regions from SNP 62859 to 63459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,157 DEBUG Processing 205/461 atomic regions from SNP 61320 to 61920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:02,182 DEBUG Processing 189/1108 atomic regions from SNP 56469 to 57069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,186 DEBUG Processing 76/630 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,317 DEBUG Processing 295/831 atomic regions from SNP 88494 to 89095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,370 DEBUG Processing 288/853 atomic regions from SNP 86200 to 86800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,388 DEBUG Processing 206/461 atomic regions from SNP 61620 to 62220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:02,407 DEBUG Processing 211/996 atomic regions from SNP 63159 to 63759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,416 DEBUG Processing 77/630 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,451 DEBUG Processing 190/1108 atomic regions from SNP 56769 to 57369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,544 DEBUG Processing 296/831 atomic regions from SNP 88795 to 89395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,642 DEBUG Processing 289/853 atomic regions from SNP 86500 to 87100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,660 DEBUG Processing 207/461 atomic regions from SNP 61920 to 62520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:02,714 DEBUG Processing 78/630 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,742 DEBUG Processing 212/996 atomic regions from SNP 63459 to 64059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,772 DEBUG Processing 191/1108 atomic regions from SNP 57069 to 57669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,821 DEBUG Processing 297/831 atomic regions from SNP 89095 to 89695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,929 DEBUG Processing 290/853 atomic regions from SNP 86800 to 87400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,964 DEBUG Processing 208/461 atomic regions from SNP 62220 to 62820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:03,020 DEBUG Processing 79/630 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,055 DEBUG Processing 213/996 atomic regions from SNP 63759 to 64359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,080 DEBUG Processing 298/831 atomic regions from SNP 89395 to 89995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,082 DEBUG Processing 192/1108 atomic regions from SNP 57369 to 57969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,173 DEBUG Processing 291/853 atomic regions from SNP 87100 to 87700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,209 DEBUG Processing 209/461 atomic regions from SNP 62520 to 63120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:03,273 DEBUG Processing 80/630 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,354 DEBUG Processing 299/831 atomic regions from SNP 89695 to 90295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,358 DEBUG Processing 214/996 atomic regions from SNP 64059 to 64659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,424 DEBUG Processing 193/1108 atomic regions from SNP 57669 to 58269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,455 DEBUG Processing 292/853 atomic regions from SNP 87400 to 88000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,499 DEBUG Processing 210/461 atomic regions from SNP 62820 to 63420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:03,556 DEBUG Processing 81/630 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,630 DEBUG Processing 300/831 atomic regions from SNP 89995 to 90595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,671 DEBUG Processing 215/996 atomic regions from SNP 64359 to 64959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,738 DEBUG Processing 293/853 atomic regions from SNP 87700 to 88300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,753 DEBUG Processing 194/1108 atomic regions from SNP 57969 to 58569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,792 DEBUG Processing 211/461 atomic regions from SNP 63120 to 63720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:03,846 DEBUG Processing 82/630 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,933 DEBUG Processing 301/831 atomic regions from SNP 90295 to 90895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,997 DEBUG Processing 216/996 atomic regions from SNP 64659 to 65259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,032 DEBUG Processing 294/853 atomic regions from SNP 88000 to 88600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,086 DEBUG Processing 195/1108 atomic regions from SNP 58269 to 58869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,088 DEBUG Processing 212/461 atomic regions from SNP 63420 to 64020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:04,147 DEBUG Processing 83/630 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,238 DEBUG Processing 302/831 atomic regions from SNP 90595 to 91195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,331 DEBUG Processing 217/996 atomic regions from SNP 64959 to 65559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,340 DEBUG Processing 295/853 atomic regions from SNP 88300 to 88900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,394 DEBUG Processing 213/461 atomic regions from SNP 63720 to 64320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:04,426 DEBUG Processing 196/1108 atomic regions from SNP 58569 to 59169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,462 DEBUG Processing 84/630 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,546 DEBUG Processing 303/831 atomic regions from SNP 90895 to 91495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,648 DEBUG Processing 296/853 atomic regions from SNP 88600 to 89200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,661 DEBUG Processing 214/461 atomic regions from SNP 64020 to 64620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:04,662 DEBUG Processing 218/996 atomic regions from SNP 65259 to 65859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,709 DEBUG Processing 85/630 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,716 DEBUG Processing 197/1108 atomic regions from SNP 58869 to 59469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,813 DEBUG Processing 304/831 atomic regions from SNP 91195 to 91795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,976 DEBUG Processing 297/853 atomic regions from SNP 88900 to 89500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,990 DEBUG Processing 215/461 atomic regions from SNP 64320 to 64920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:05,019 DEBUG Processing 219/996 atomic regions from SNP 65559 to 66159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,019 DEBUG Processing 86/630 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,052 DEBUG Processing 198/1108 atomic regions from SNP 59169 to 59769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,062 DEBUG Processing 305/831 atomic regions from SNP 91495 to 92095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,307 DEBUG Processing 298/853 atomic regions from SNP 89200 to 89800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,307 DEBUG Processing 216/461 atomic regions from SNP 64620 to 65220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:05,333 DEBUG Processing 87/630 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,354 DEBUG Processing 306/831 atomic regions from SNP 91795 to 92395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,358 DEBUG Processing 220/996 atomic regions from SNP 65859 to 66459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,389 DEBUG Processing 199/1108 atomic regions from SNP 59469 to 60069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,622 DEBUG Processing 299/853 atomic regions from SNP 89500 to 90100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,638 DEBUG Processing 217/461 atomic regions from SNP 64920 to 65520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:05,665 DEBUG Processing 88/630 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,692 DEBUG Processing 307/831 atomic regions from SNP 92095 to 92695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,719 DEBUG Processing 221/996 atomic regions from SNP 66159 to 66759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,745 DEBUG Processing 200/1108 atomic regions from SNP 59769 to 60369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,852 DEBUG Processing 300/853 atomic regions from SNP 89800 to 90400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,863 DEBUG Processing 218/461 atomic regions from SNP 65220 to 65820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:05,896 DEBUG Processing 89/630 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,947 DEBUG Processing 308/831 atomic regions from SNP 92395 to 92995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,993 DEBUG Processing 222/996 atomic regions from SNP 66459 to 67059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,014 DEBUG Processing 201/1108 atomic regions from SNP 60069 to 60669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,089 DEBUG Processing 301/853 atomic regions from SNP 90100 to 90700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,098 DEBUG Processing 219/461 atomic regions from SNP 65520 to 66120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:06,139 DEBUG Processing 90/630 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,169 DEBUG Processing 309/831 atomic regions from SNP 92695 to 93295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,250 DEBUG Processing 223/996 atomic regions from SNP 66759 to 67359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,272 DEBUG Processing 202/1108 atomic regions from SNP 60369 to 60969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,351 DEBUG Processing 302/853 atomic regions from SNP 90400 to 91000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,369 DEBUG Processing 220/461 atomic regions from SNP 65820 to 66420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:06,434 DEBUG Processing 310/831 atomic regions from SNP 92995 to 93595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,440 DEBUG Processing 91/630 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,563 DEBUG Processing 224/996 atomic regions from SNP 67059 to 67659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,599 DEBUG Processing 203/1108 atomic regions from SNP 60669 to 61269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,600 DEBUG Processing 303/853 atomic regions from SNP 90700 to 91300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,638 DEBUG Processing 221/461 atomic regions from SNP 66120 to 66720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:06,699 DEBUG Processing 311/831 atomic regions from SNP 93295 to 93895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,732 DEBUG Processing 92/630 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,914 DEBUG Processing 304/853 atomic regions from SNP 91000 to 91600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,916 DEBUG Processing 225/996 atomic regions from SNP 67359 to 67959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,945 DEBUG Processing 222/461 atomic regions from SNP 66420 to 67020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:06,950 DEBUG Processing 204/1108 atomic regions from SNP 60969 to 61569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,996 DEBUG Processing 312/831 atomic regions from SNP 93595 to 94195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,041 DEBUG Processing 93/630 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,253 DEBUG Processing 305/853 atomic regions from SNP 91300 to 91900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,278 DEBUG Processing 223/461 atomic regions from SNP 66720 to 67320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:07,286 DEBUG Processing 226/996 atomic regions from SNP 67659 to 68259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,315 DEBUG Processing 313/831 atomic regions from SNP 93895 to 94495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,320 DEBUG Processing 205/1108 atomic regions from SNP 61269 to 61869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,376 DEBUG Processing 94/630 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,557 DEBUG Processing 306/853 atomic regions from SNP 91600 to 92200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,611 DEBUG Processing 224/461 atomic regions from SNP 67020 to 67620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:07,640 DEBUG Processing 314/831 atomic regions from SNP 94195 to 94795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,644 DEBUG Processing 227/996 atomic regions from SNP 67959 to 68559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,653 DEBUG Processing 95/630 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,667 DEBUG Processing 206/1108 atomic regions from SNP 61569 to 62169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,898 DEBUG Processing 307/853 atomic regions from SNP 91900 to 92500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,965 DEBUG Processing 225/461 atomic regions from SNP 67320 to 67920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:07,998 DEBUG Processing 315/831 atomic regions from SNP 94495 to 95095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,022 DEBUG Processing 96/630 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,032 DEBUG Processing 228/996 atomic regions from SNP 68259 to 68859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,050 DEBUG Processing 207/1108 atomic regions from SNP 61869 to 62469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,221 DEBUG Processing 308/853 atomic regions from SNP 92200 to 92800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,289 DEBUG Processing 226/461 atomic regions from SNP 67620 to 68220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:08,336 DEBUG Processing 316/831 atomic regions from SNP 94795 to 95395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,385 DEBUG Processing 97/630 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,403 DEBUG Processing 229/996 atomic regions from SNP 68559 to 69159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,440 DEBUG Processing 208/1108 atomic regions from SNP 62169 to 62769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,506 DEBUG Processing 309/853 atomic regions from SNP 92500 to 93100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,580 DEBUG Processing 227/461 atomic regions from SNP 67920 to 68520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:08,640 DEBUG Processing 317/831 atomic regions from SNP 95095 to 95695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,708 DEBUG Processing 98/630 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,746 DEBUG Processing 230/996 atomic regions from SNP 68859 to 69459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,775 DEBUG Processing 209/1108 atomic regions from SNP 62469 to 63069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,795 DEBUG Processing 310/853 atomic regions from SNP 92800 to 93400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,826 DEBUG Processing 228/461 atomic regions from SNP 68220 to 68820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:08,880 DEBUG Processing 318/831 atomic regions from SNP 95395 to 95995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,979 DEBUG Processing 99/630 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,048 DEBUG Processing 231/996 atomic regions from SNP 69159 to 69759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,092 DEBUG Processing 311/853 atomic regions from SNP 93100 to 93700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,102 DEBUG Processing 210/1108 atomic regions from SNP 62769 to 63369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,116 DEBUG Processing 229/461 atomic regions from SNP 68520 to 69120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:09,152 DEBUG Processing 319/831 atomic regions from SNP 95695 to 96295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,206 DEBUG Processing 100/630 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,314 DEBUG Processing 232/996 atomic regions from SNP 69459 to 70059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,325 DEBUG Processing 312/853 atomic regions from SNP 93400 to 94000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,355 DEBUG Processing 230/461 atomic regions from SNP 68820 to 69420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:09,373 DEBUG Processing 211/1108 atomic regions from SNP 63069 to 63669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,390 DEBUG Processing 320/831 atomic regions from SNP 95995 to 96595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,435 DEBUG Processing 101/630 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,555 DEBUG Processing 313/853 atomic regions from SNP 93700 to 94300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,571 DEBUG Processing 233/996 atomic regions from SNP 69759 to 70359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,582 DEBUG Processing 231/461 atomic regions from SNP 69120 to 69720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:09,629 DEBUG Processing 321/831 atomic regions from SNP 96295 to 96895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,643 DEBUG Processing 212/1108 atomic regions from SNP 63369 to 63969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,669 DEBUG Processing 102/630 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,771 DEBUG Processing 314/853 atomic regions from SNP 94000 to 94600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,808 DEBUG Processing 232/461 atomic regions from SNP 69420 to 70020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:09,825 DEBUG Processing 234/996 atomic regions from SNP 70059 to 70659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,856 DEBUG Processing 322/831 atomic regions from SNP 96595 to 97195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,898 DEBUG Processing 103/630 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,904 DEBUG Processing 213/1108 atomic regions from SNP 63669 to 64269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,992 DEBUG Processing 315/853 atomic regions from SNP 94300 to 94900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,025 DEBUG Processing 233/461 atomic regions from SNP 69720 to 70320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:10,076 DEBUG Processing 235/996 atomic regions from SNP 70359 to 70959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,079 DEBUG Processing 323/831 atomic regions from SNP 96895 to 97495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,126 DEBUG Processing 104/630 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,161 DEBUG Processing 214/1108 atomic regions from SNP 63969 to 64569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,211 DEBUG Processing 316/853 atomic regions from SNP 94600 to 95200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,241 DEBUG Processing 234/461 atomic regions from SNP 70020 to 70620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:10,298 DEBUG Processing 324/831 atomic regions from SNP 97195 to 97795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,327 DEBUG Processing 236/996 atomic regions from SNP 70659 to 71259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,351 DEBUG Processing 105/630 atomic regions from SNP 31304 to 31904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,415 DEBUG Processing 215/1108 atomic regions from SNP 64269 to 64869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,432 DEBUG Processing 317/853 atomic regions from SNP 94900 to 95500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,456 DEBUG Processing 235/461 atomic regions from SNP 70320 to 70920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:10,520 DEBUG Processing 325/831 atomic regions from SNP 97495 to 98095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,579 DEBUG Processing 106/630 atomic regions from SNP 31604 to 32204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,580 DEBUG Processing 237/996 atomic regions from SNP 70959 to 71559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,655 DEBUG Processing 318/853 atomic regions from SNP 95200 to 95800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,671 DEBUG Processing 236/461 atomic regions from SNP 70620 to 71220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:10,672 DEBUG Processing 216/1108 atomic regions from SNP 64569 to 65169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,736 DEBUG Processing 326/831 atomic regions from SNP 97795 to 98395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,796 DEBUG Processing 107/630 atomic regions from SNP 31904 to 32504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,827 DEBUG Processing 238/996 atomic regions from SNP 71259 to 71859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,871 DEBUG Processing 319/853 atomic regions from SNP 95500 to 96100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,885 DEBUG Processing 237/461 atomic regions from SNP 70920 to 71520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:10,923 DEBUG Processing 217/1108 atomic regions from SNP 64869 to 65469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,954 DEBUG Processing 327/831 atomic regions from SNP 98095 to 98695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,015 DEBUG Processing 108/630 atomic regions from SNP 32204 to 32804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,073 DEBUG Processing 239/996 atomic regions from SNP 71559 to 72159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,089 DEBUG Processing 320/853 atomic regions from SNP 95800 to 96400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,101 DEBUG Processing 238/461 atomic regions from SNP 71220 to 71820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:11,173 DEBUG Processing 328/831 atomic regions from SNP 98395 to 98995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,176 DEBUG Processing 218/1108 atomic regions from SNP 65169 to 65769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,235 DEBUG Processing 109/630 atomic regions from SNP 32504 to 33104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,305 DEBUG Processing 321/853 atomic regions from SNP 96100 to 96700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,318 DEBUG Processing 239/461 atomic regions from SNP 71520 to 72120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:11,321 DEBUG Processing 240/996 atomic regions from SNP 71859 to 72459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,393 DEBUG Processing 329/831 atomic regions from SNP 98695 to 99295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,431 DEBUG Processing 219/1108 atomic regions from SNP 65469 to 66069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,457 DEBUG Processing 110/630 atomic regions from SNP 32804 to 33404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,526 DEBUG Processing 322/853 atomic regions from SNP 96400 to 97000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,538 DEBUG Processing 240/461 atomic regions from SNP 71820 to 72420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:11,571 DEBUG Processing 241/996 atomic regions from SNP 72159 to 72759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,611 DEBUG Processing 330/831 atomic regions from SNP 98995 to 99595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,677 DEBUG Processing 111/630 atomic regions from SNP 33104 to 33704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,682 DEBUG Processing 220/1108 atomic regions from SNP 65769 to 66369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,750 DEBUG Processing 323/853 atomic regions from SNP 96700 to 97300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,758 DEBUG Processing 241/461 atomic regions from SNP 72120 to 72720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:11,823 DEBUG Processing 242/996 atomic regions from SNP 72459 to 73059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,833 DEBUG Processing 331/831 atomic regions from SNP 99295 to 99895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,898 DEBUG Processing 112/630 atomic regions from SNP 33404 to 34004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,936 DEBUG Processing 221/1108 atomic regions from SNP 66069 to 66669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,980 DEBUG Processing 242/461 atomic regions from SNP 72420 to 73020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:11,982 DEBUG Processing 324/853 atomic regions from SNP 97000 to 97600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,055 DEBUG Processing 332/831 atomic regions from SNP 99595 to 100195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,074 DEBUG Processing 243/996 atomic regions from SNP 72759 to 73359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,117 DEBUG Processing 113/630 atomic regions from SNP 33704 to 34304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,188 DEBUG Processing 222/1108 atomic regions from SNP 66369 to 66969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,198 DEBUG Processing 243/461 atomic regions from SNP 72720 to 73320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:12,201 DEBUG Processing 325/853 atomic regions from SNP 97300 to 97900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,278 DEBUG Processing 333/831 atomic regions from SNP 99895 to 100495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,324 DEBUG Processing 244/996 atomic regions from SNP 73059 to 73659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,337 DEBUG Processing 114/630 atomic regions from SNP 34004 to 34604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,414 DEBUG Processing 244/461 atomic regions from SNP 73020 to 73620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:12,421 DEBUG Processing 326/853 atomic regions from SNP 97600 to 98200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,440 DEBUG Processing 223/1108 atomic regions from SNP 66669 to 67269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,502 DEBUG Processing 334/831 atomic regions from SNP 100195 to 100795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,559 DEBUG Processing 115/630 atomic regions from SNP 34304 to 34904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,580 DEBUG Processing 245/996 atomic regions from SNP 73359 to 73959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,629 DEBUG Processing 245/461 atomic regions from SNP 73320 to 73920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:12,640 DEBUG Processing 327/853 atomic regions from SNP 97900 to 98500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,691 DEBUG Processing 224/1108 atomic regions from SNP 66969 to 67569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,721 DEBUG Processing 335/831 atomic regions from SNP 100495 to 101095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,779 DEBUG Processing 116/630 atomic regions from SNP 34604 to 35204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,833 DEBUG Processing 246/996 atomic regions from SNP 73659 to 74259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,849 DEBUG Processing 246/461 atomic regions from SNP 73620 to 74220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:12,860 DEBUG Processing 328/853 atomic regions from SNP 98200 to 98800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,945 DEBUG Processing 336/831 atomic regions from SNP 100795 to 101395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,947 DEBUG Processing 225/1108 atomic regions from SNP 67269 to 67869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,006 DEBUG Processing 117/630 atomic regions from SNP 34904 to 35504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,072 DEBUG Processing 247/461 atomic regions from SNP 73920 to 74520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:13,081 DEBUG Processing 329/853 atomic regions from SNP 98500 to 99100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,087 DEBUG Processing 247/996 atomic regions from SNP 73959 to 74559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,163 DEBUG Processing 337/831 atomic regions from SNP 101095 to 101695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,202 DEBUG Processing 226/1108 atomic regions from SNP 67569 to 68169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,227 DEBUG Processing 118/630 atomic regions from SNP 35204 to 35804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,292 DEBUG Processing 248/461 atomic regions from SNP 74220 to 74820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:13,300 DEBUG Processing 330/853 atomic regions from SNP 98800 to 99400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,339 DEBUG Processing 248/996 atomic regions from SNP 74259 to 74859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,381 DEBUG Processing 338/831 atomic regions from SNP 101395 to 101995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,447 DEBUG Processing 119/630 atomic regions from SNP 35504 to 36104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,456 DEBUG Processing 227/1108 atomic regions from SNP 67869 to 68469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,507 DEBUG Processing 249/461 atomic regions from SNP 74520 to 75120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:13,522 DEBUG Processing 331/853 atomic regions from SNP 99100 to 99700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,587 DEBUG Processing 249/996 atomic regions from SNP 74559 to 75159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,610 DEBUG Processing 339/831 atomic regions from SNP 101695 to 102295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,666 DEBUG Processing 120/630 atomic regions from SNP 35804 to 36404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,707 DEBUG Processing 228/1108 atomic regions from SNP 68169 to 68769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,718 DEBUG Processing 250/461 atomic regions from SNP 74820 to 75420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:13,769 DEBUG Processing 332/853 atomic regions from SNP 99400 to 100000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,833 DEBUG Processing 250/996 atomic regions from SNP 74859 to 75459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,842 DEBUG Processing 340/831 atomic regions from SNP 101995 to 102595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,885 DEBUG Processing 121/630 atomic regions from SNP 36104 to 36704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,931 DEBUG Processing 251/461 atomic regions from SNP 75120 to 75720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:13,958 DEBUG Processing 229/1108 atomic regions from SNP 68469 to 69069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,982 DEBUG Processing 333/853 atomic regions from SNP 99700 to 100300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,058 DEBUG Processing 341/831 atomic regions from SNP 102295 to 102895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,082 DEBUG Processing 251/996 atomic regions from SNP 75159 to 75759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,106 DEBUG Processing 122/630 atomic regions from SNP 36404 to 37004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,150 DEBUG Processing 252/461 atomic regions from SNP 75420 to 76020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:14,196 DEBUG Processing 334/853 atomic regions from SNP 100000 to 100600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,206 DEBUG Processing 230/1108 atomic regions from SNP 68769 to 69369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,270 DEBUG Processing 342/831 atomic regions from SNP 102595 to 103195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,326 DEBUG Processing 123/630 atomic regions from SNP 36704 to 37304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,328 DEBUG Processing 252/996 atomic regions from SNP 75459 to 76059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,370 DEBUG Processing 253/461 atomic regions from SNP 75720 to 76320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:14,412 DEBUG Processing 335/853 atomic regions from SNP 100300 to 100900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,480 DEBUG Processing 231/1108 atomic regions from SNP 69069 to 69669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,481 DEBUG Processing 343/831 atomic regions from SNP 102895 to 103495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,548 DEBUG Processing 124/630 atomic regions from SNP 37004 to 37604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,578 DEBUG Processing 253/996 atomic regions from SNP 75759 to 76359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,592 DEBUG Processing 254/461 atomic regions from SNP 76020 to 76620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:14,633 DEBUG Processing 336/853 atomic regions from SNP 100600 to 101200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,696 DEBUG Processing 344/831 atomic regions from SNP 103195 to 103795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,750 DEBUG Processing 232/1108 atomic regions from SNP 69369 to 69969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,765 DEBUG Processing 125/630 atomic regions from SNP 37304 to 37904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,811 DEBUG Processing 255/461 atomic regions from SNP 76320 to 76920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:14,826 DEBUG Processing 254/996 atomic regions from SNP 76059 to 76659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,849 DEBUG Processing 337/853 atomic regions from SNP 100900 to 101500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,907 DEBUG Processing 345/831 atomic regions from SNP 103495 to 104095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,983 DEBUG Processing 126/630 atomic regions from SNP 37604 to 38204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,000 DEBUG Processing 233/1108 atomic regions from SNP 69669 to 70269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,030 DEBUG Processing 256/461 atomic regions from SNP 76620 to 77220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:15,069 DEBUG Processing 338/853 atomic regions from SNP 101200 to 101800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,078 DEBUG Processing 255/996 atomic regions from SNP 76359 to 76959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,122 DEBUG Processing 346/831 atomic regions from SNP 103795 to 104395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,203 DEBUG Processing 127/630 atomic regions from SNP 37904 to 38504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,247 DEBUG Processing 257/461 atomic regions from SNP 76920 to 77520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:15,252 DEBUG Processing 234/1108 atomic regions from SNP 69969 to 70569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,288 DEBUG Processing 339/853 atomic regions from SNP 101500 to 102100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,326 DEBUG Processing 256/996 atomic regions from SNP 76659 to 77259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,334 DEBUG Processing 347/831 atomic regions from SNP 104095 to 104695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,418 DEBUG Processing 128/630 atomic regions from SNP 38204 to 38804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,461 DEBUG Processing 258/461 atomic regions from SNP 77220 to 77820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:15,504 DEBUG Processing 235/1108 atomic regions from SNP 70269 to 70869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,506 DEBUG Processing 340/853 atomic regions from SNP 101800 to 102400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,550 DEBUG Processing 348/831 atomic regions from SNP 104395 to 104995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,572 DEBUG Processing 257/996 atomic regions from SNP 76959 to 77559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,636 DEBUG Processing 129/630 atomic regions from SNP 38504 to 39104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,676 DEBUG Processing 259/461 atomic regions from SNP 77520 to 78120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:15,723 DEBUG Processing 341/853 atomic regions from SNP 102100 to 102700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,759 DEBUG Processing 236/1108 atomic regions from SNP 70569 to 71169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,762 DEBUG Processing 349/831 atomic regions from SNP 104695 to 105295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,819 DEBUG Processing 258/996 atomic regions from SNP 77259 to 77859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,854 DEBUG Processing 130/630 atomic regions from SNP 38804 to 39404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,899 DEBUG Processing 260/461 atomic regions from SNP 77820 to 78420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:15,944 DEBUG Processing 342/853 atomic regions from SNP 102400 to 103000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,989 DEBUG Processing 350/831 atomic regions from SNP 104995 to 105595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,019 DEBUG Processing 237/1108 atomic regions from SNP 70869 to 71469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,066 DEBUG Processing 259/996 atomic regions from SNP 77559 to 78159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,070 DEBUG Processing 131/630 atomic regions from SNP 39104 to 39704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,118 DEBUG Processing 261/461 atomic regions from SNP 78120 to 78720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:16,164 DEBUG Processing 343/853 atomic regions from SNP 102700 to 103300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,205 DEBUG Processing 351/831 atomic regions from SNP 105295 to 105895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,272 DEBUG Processing 238/1108 atomic regions from SNP 71169 to 71769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,289 DEBUG Processing 132/630 atomic regions from SNP 39404 to 40004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,321 DEBUG Processing 260/996 atomic regions from SNP 77859 to 78459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,343 DEBUG Processing 262/461 atomic regions from SNP 78420 to 79020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:16,385 DEBUG Processing 344/853 atomic regions from SNP 103000 to 103600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,426 DEBUG Processing 352/831 atomic regions from SNP 105595 to 106195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,511 DEBUG Processing 133/630 atomic regions from SNP 39704 to 40304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,525 DEBUG Processing 239/1108 atomic regions from SNP 71469 to 72069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,564 DEBUG Processing 263/461 atomic regions from SNP 78720 to 79320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:16,573 DEBUG Processing 261/996 atomic regions from SNP 78159 to 78759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,605 DEBUG Processing 345/853 atomic regions from SNP 103300 to 103900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,641 DEBUG Processing 353/831 atomic regions from SNP 105895 to 106495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,733 DEBUG Processing 134/630 atomic regions from SNP 40004 to 40604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,781 DEBUG Processing 240/1108 atomic regions from SNP 71769 to 72369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,791 DEBUG Processing 264/461 atomic regions from SNP 79020 to 79620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:16,825 DEBUG Processing 346/853 atomic regions from SNP 103600 to 104200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,830 DEBUG Processing 262/996 atomic regions from SNP 78459 to 79059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,861 DEBUG Processing 354/831 atomic regions from SNP 106195 to 106795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,954 DEBUG Processing 135/630 atomic regions from SNP 40304 to 40904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,017 DEBUG Processing 265/461 atomic regions from SNP 79320 to 79920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:17,037 DEBUG Processing 241/1108 atomic regions from SNP 72069 to 72669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,047 DEBUG Processing 347/853 atomic regions from SNP 103900 to 104500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,079 DEBUG Processing 355/831 atomic regions from SNP 106495 to 107095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,084 DEBUG Processing 263/996 atomic regions from SNP 78759 to 79359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,174 DEBUG Processing 136/630 atomic regions from SNP 40604 to 41204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,245 DEBUG Processing 266/461 atomic regions from SNP 79620 to 80220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:17,271 DEBUG Processing 348/853 atomic regions from SNP 104200 to 104800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,297 DEBUG Processing 242/1108 atomic regions from SNP 72369 to 72969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,301 DEBUG Processing 356/831 atomic regions from SNP 106795 to 107395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,335 DEBUG Processing 264/996 atomic regions from SNP 79059 to 79659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,390 DEBUG Processing 137/630 atomic regions from SNP 40904 to 41504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,473 DEBUG Processing 267/461 atomic regions from SNP 79920 to 80520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:17,495 DEBUG Processing 349/853 atomic regions from SNP 104500 to 105100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,523 DEBUG Processing 357/831 atomic regions from SNP 107095 to 107695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,554 DEBUG Processing 243/1108 atomic regions from SNP 72669 to 73269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,594 DEBUG Processing 265/996 atomic regions from SNP 79359 to 79959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,607 DEBUG Processing 138/630 atomic regions from SNP 41204 to 41804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,706 DEBUG Processing 268/461 atomic regions from SNP 80220 to 80820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:17,723 DEBUG Processing 350/853 atomic regions from SNP 104800 to 105400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,743 DEBUG Processing 358/831 atomic regions from SNP 107395 to 107995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,828 DEBUG Processing 244/1108 atomic regions from SNP 72969 to 73569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,890 DEBUG Processing 139/630 atomic regions from SNP 41504 to 42104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,903 DEBUG Processing 266/996 atomic regions from SNP 79659 to 80259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,028 DEBUG Processing 269/461 atomic regions from SNP 80520 to 81120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:18,050 DEBUG Processing 351/853 atomic regions from SNP 105100 to 105700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,056 DEBUG Processing 359/831 atomic regions from SNP 107695 to 108295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,169 DEBUG Processing 245/1108 atomic regions from SNP 73269 to 73869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,207 DEBUG Processing 140/630 atomic regions from SNP 41804 to 42404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,254 DEBUG Processing 267/996 atomic regions from SNP 79959 to 80559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,369 DEBUG Processing 270/461 atomic regions from SNP 80820 to 81420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:18,406 DEBUG Processing 352/853 atomic regions from SNP 105400 to 106000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,415 DEBUG Processing 360/831 atomic regions from SNP 107995 to 108595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,542 DEBUG Processing 246/1108 atomic regions from SNP 73569 to 74169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,573 DEBUG Processing 141/630 atomic regions from SNP 42104 to 42704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,632 DEBUG Processing 268/996 atomic regions from SNP 80259 to 80859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,700 DEBUG Processing 271/461 atomic regions from SNP 81120 to 81720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:18,743 DEBUG Processing 353/853 atomic regions from SNP 105700 to 106300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,758 DEBUG Processing 361/831 atomic regions from SNP 108295 to 108895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,895 DEBUG Processing 247/1108 atomic regions from SNP 73869 to 74469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,913 DEBUG Processing 142/630 atomic regions from SNP 42404 to 43004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,003 DEBUG Processing 269/996 atomic regions from SNP 80559 to 81159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,032 DEBUG Processing 272/461 atomic regions from SNP 81420 to 82020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:19,088 DEBUG Processing 354/853 atomic regions from SNP 106000 to 106600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:19,098 DEBUG Processing 362/831 atomic regions from SNP 108595 to 109195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,259 DEBUG Processing 248/1108 atomic regions from SNP 74169 to 74769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,266 DEBUG Processing 143/630 atomic regions from SNP 42704 to 43304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,365 DEBUG Processing 270/996 atomic regions from SNP 80859 to 81459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,367 DEBUG Processing 273/461 atomic regions from SNP 81720 to 82320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:19,418 DEBUG Processing 355/853 atomic regions from SNP 106300 to 106900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:19,436 DEBUG Processing 363/831 atomic regions from SNP 108895 to 109495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,614 DEBUG Processing 144/630 atomic regions from SNP 43004 to 43604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,639 DEBUG Processing 249/1108 atomic regions from SNP 74469 to 75069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,709 DEBUG Processing 274/461 atomic regions from SNP 82020 to 82620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:19,734 DEBUG Processing 271/996 atomic regions from SNP 81159 to 81759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,752 DEBUG Processing 356/853 atomic regions from SNP 106600 to 107200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:19,779 DEBUG Processing 364/831 atomic regions from SNP 109195 to 109795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,961 DEBUG Processing 145/630 atomic regions from SNP 43304 to 43904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,985 DEBUG Processing 275/461 atomic regions from SNP 82320 to 82920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:20,012 DEBUG Processing 250/1108 atomic regions from SNP 74769 to 75369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,036 DEBUG Processing 272/996 atomic regions from SNP 81459 to 82059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,044 DEBUG Processing 357/853 atomic regions from SNP 106900 to 107500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,064 DEBUG Processing 365/831 atomic regions from SNP 109495 to 110095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,191 DEBUG Processing 146/630 atomic regions from SNP 43604 to 44204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,214 DEBUG Processing 276/461 atomic regions from SNP 82620 to 83220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:20,278 DEBUG Processing 358/853 atomic regions from SNP 107200 to 107800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,279 DEBUG Processing 251/1108 atomic regions from SNP 75069 to 75669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,287 DEBUG Processing 366/831 atomic regions from SNP 109795 to 110395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,297 DEBUG Processing 273/996 atomic regions from SNP 81759 to 82359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,414 DEBUG Processing 147/630 atomic regions from SNP 43904 to 44504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,435 DEBUG Processing 277/461 atomic regions from SNP 82920 to 83520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:20,507 DEBUG Processing 359/853 atomic regions from SNP 107500 to 108100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,515 DEBUG Processing 367/831 atomic regions from SNP 110095 to 110695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,540 DEBUG Processing 252/1108 atomic regions from SNP 75369 to 75969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,549 DEBUG Processing 274/996 atomic regions from SNP 82059 to 82659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,647 DEBUG Processing 148/630 atomic regions from SNP 44204 to 44804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,667 DEBUG Processing 278/461 atomic regions from SNP 83220 to 83820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:20,740 DEBUG Processing 360/853 atomic regions from SNP 107800 to 108400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,745 DEBUG Processing 368/831 atomic regions from SNP 110395 to 110995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,806 DEBUG Processing 275/996 atomic regions from SNP 82359 to 82959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,807 DEBUG Processing 253/1108 atomic regions from SNP 75669 to 76269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,966 DEBUG Processing 149/630 atomic regions from SNP 44504 to 45104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,992 DEBUG Processing 279/461 atomic regions from SNP 83520 to 84120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:21,058 DEBUG Processing 361/853 atomic regions from SNP 108100 to 108700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,079 DEBUG Processing 369/831 atomic regions from SNP 110695 to 111295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,156 DEBUG Processing 254/1108 atomic regions from SNP 75969 to 76569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,157 DEBUG Processing 276/996 atomic regions from SNP 82659 to 83259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,302 DEBUG Processing 150/630 atomic regions from SNP 44804 to 45404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,344 DEBUG Processing 280/461 atomic regions from SNP 83820 to 84420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:21,403 DEBUG Processing 362/853 atomic regions from SNP 108400 to 109000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,442 DEBUG Processing 370/831 atomic regions from SNP 110995 to 111595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,538 DEBUG Processing 255/1108 atomic regions from SNP 76269 to 76869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,546 DEBUG Processing 277/996 atomic regions from SNP 82959 to 83559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,649 DEBUG Processing 151/630 atomic regions from SNP 45104 to 45704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,702 DEBUG Processing 281/461 atomic regions from SNP 84120 to 84720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:21,768 DEBUG Processing 363/853 atomic regions from SNP 108700 to 109300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,828 DEBUG Processing 371/831 atomic regions from SNP 111295 to 111895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,899 DEBUG Processing 278/996 atomic regions from SNP 83259 to 83859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,908 DEBUG Processing 256/1108 atomic regions from SNP 76569 to 77169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,953 DEBUG Processing 152/630 atomic regions from SNP 45404 to 46004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,982 DEBUG Processing 282/461 atomic regions from SNP 84420 to 85020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:22,093 DEBUG Processing 364/853 atomic regions from SNP 109000 to 109600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,158 DEBUG Processing 372/831 atomic regions from SNP 111595 to 112195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,267 DEBUG Processing 279/996 atomic regions from SNP 83559 to 84159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,270 DEBUG Processing 153/630 atomic regions from SNP 45704 to 46304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,285 DEBUG Processing 257/1108 atomic regions from SNP 76869 to 77469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,286 DEBUG Processing 283/461 atomic regions from SNP 84720 to 85320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:22,384 DEBUG Processing 365/853 atomic regions from SNP 109300 to 109900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,445 DEBUG Processing 373/831 atomic regions from SNP 111895 to 112495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,554 DEBUG Processing 284/461 atomic regions from SNP 85020 to 85620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:22,560 DEBUG Processing 154/630 atomic regions from SNP 46004 to 46604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,574 DEBUG Processing 280/996 atomic regions from SNP 83859 to 84459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,591 DEBUG Processing 258/1108 atomic regions from SNP 77169 to 77769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,619 DEBUG Processing 366/853 atomic regions from SNP 109600 to 110200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,682 DEBUG Processing 374/831 atomic regions from SNP 112195 to 112795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,845 DEBUG Processing 285/461 atomic regions from SNP 85320 to 85920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:22,860 DEBUG Processing 155/630 atomic regions from SNP 46304 to 46904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,898 DEBUG Processing 281/996 atomic regions from SNP 84159 to 84759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,921 DEBUG Processing 367/853 atomic regions from SNP 109900 to 110500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,940 DEBUG Processing 259/1108 atomic regions from SNP 77469 to 78069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,971 DEBUG Processing 375/831 atomic regions from SNP 112495 to 113095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,126 DEBUG Processing 286/461 atomic regions from SNP 85620 to 86220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:23,159 DEBUG Processing 156/630 atomic regions from SNP 46604 to 47204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,211 DEBUG Processing 368/853 atomic regions from SNP 110200 to 110800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,213 DEBUG Processing 282/996 atomic regions from SNP 84459 to 85059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,262 DEBUG Processing 260/1108 atomic regions from SNP 77769 to 78369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,270 DEBUG Processing 376/831 atomic regions from SNP 112795 to 113395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,430 DEBUG Processing 287/461 atomic regions from SNP 85920 to 86520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:23,469 DEBUG Processing 157/630 atomic regions from SNP 46904 to 47504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,528 DEBUG Processing 369/853 atomic regions from SNP 110500 to 111100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,551 DEBUG Processing 283/996 atomic regions from SNP 84759 to 85359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,578 DEBUG Processing 377/831 atomic regions from SNP 113095 to 113695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,606 DEBUG Processing 261/1108 atomic regions from SNP 78069 to 78669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,679 DEBUG Processing 288/461 atomic regions from SNP 86220 to 86820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:23,709 DEBUG Processing 158/630 atomic regions from SNP 47204 to 47804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,813 DEBUG Processing 370/853 atomic regions from SNP 110800 to 111400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,845 DEBUG Processing 378/831 atomic regions from SNP 113395 to 113995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,859 DEBUG Processing 284/996 atomic regions from SNP 85059 to 85659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,911 DEBUG Processing 289/461 atomic regions from SNP 86520 to 87120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:23,918 DEBUG Processing 262/1108 atomic regions from SNP 78369 to 78969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,934 DEBUG Processing 159/630 atomic regions from SNP 47504 to 48104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,085 DEBUG Processing 371/853 atomic regions from SNP 111100 to 111700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,107 DEBUG Processing 379/831 atomic regions from SNP 113695 to 114295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,132 DEBUG Processing 285/996 atomic regions from SNP 85359 to 85959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,194 DEBUG Processing 290/461 atomic regions from SNP 86820 to 87420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:24,218 DEBUG Processing 160/630 atomic regions from SNP 47804 to 48404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,251 DEBUG Processing 263/1108 atomic regions from SNP 78669 to 79269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,305 DEBUG Processing 372/853 atomic regions from SNP 111400 to 112000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,325 DEBUG Processing 380/831 atomic regions from SNP 113995 to 114595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,379 DEBUG Processing 286/996 atomic regions from SNP 85659 to 86259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,415 DEBUG Processing 291/461 atomic regions from SNP 87120 to 87720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:24,445 DEBUG Processing 161/630 atomic regions from SNP 48104 to 48704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,518 DEBUG Processing 264/1108 atomic regions from SNP 78969 to 79569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,537 DEBUG Processing 373/853 atomic regions from SNP 111700 to 112300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,551 DEBUG Processing 381/831 atomic regions from SNP 114295 to 114895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,631 DEBUG Processing 287/996 atomic regions from SNP 85959 to 86559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,657 DEBUG Processing 292/461 atomic regions from SNP 87420 to 88020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:24,679 DEBUG Processing 162/630 atomic regions from SNP 48404 to 49004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,833 DEBUG Processing 382/831 atomic regions from SNP 114595 to 115195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,834 DEBUG Processing 265/1108 atomic regions from SNP 79269 to 79869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,835 DEBUG Processing 374/853 atomic regions from SNP 112000 to 112600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,939 DEBUG Processing 293/461 atomic regions from SNP 87720 to 88320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:24,954 DEBUG Processing 163/630 atomic regions from SNP 48704 to 49304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,961 DEBUG Processing 288/996 atomic regions from SNP 86259 to 86859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,052 DEBUG Processing 383/831 atomic regions from SNP 114895 to 115495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,060 DEBUG Processing 375/853 atomic regions from SNP 112300 to 112900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,092 DEBUG Processing 266/1108 atomic regions from SNP 79569 to 80169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,211 DEBUG Processing 294/461 atomic regions from SNP 88020 to 88620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:25,235 DEBUG Processing 164/630 atomic regions from SNP 49004 to 49604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,279 DEBUG Processing 289/996 atomic regions from SNP 86559 to 87159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,343 DEBUG Processing 384/831 atomic regions from SNP 115195 to 115795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,353 DEBUG Processing 376/853 atomic regions from SNP 112600 to 113200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,396 DEBUG Processing 267/1108 atomic regions from SNP 79869 to 80469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,431 DEBUG Processing 295/461 atomic regions from SNP 88320 to 88920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:25,474 DEBUG Processing 165/630 atomic regions from SNP 49304 to 49904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,565 DEBUG Processing 290/996 atomic regions from SNP 86859 to 87459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,594 DEBUG Processing 385/831 atomic regions from SNP 115495 to 116095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,601 DEBUG Processing 377/853 atomic regions from SNP 112900 to 113500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,646 DEBUG Processing 296/461 atomic regions from SNP 88620 to 89220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:25,654 DEBUG Processing 268/1108 atomic regions from SNP 80169 to 80769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,692 DEBUG Processing 166/630 atomic regions from SNP 49604 to 50204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,814 DEBUG Processing 291/996 atomic regions from SNP 87159 to 87759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,830 DEBUG Processing 386/831 atomic regions from SNP 115795 to 116395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,838 DEBUG Processing 378/853 atomic regions from SNP 113200 to 113800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,863 DEBUG Processing 297/461 atomic regions from SNP 88920 to 89520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:25,915 DEBUG Processing 167/630 atomic regions from SNP 49904 to 50504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,918 DEBUG Processing 269/1108 atomic regions from SNP 80469 to 81069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,053 DEBUG Processing 387/831 atomic regions from SNP 116095 to 116695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,059 DEBUG Processing 292/996 atomic regions from SNP 87459 to 88059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,060 DEBUG Processing 379/853 atomic regions from SNP 113500 to 114100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,076 DEBUG Processing 298/461 atomic regions from SNP 89220 to 89820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:26,136 DEBUG Processing 168/630 atomic regions from SNP 50204 to 50804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,176 DEBUG Processing 270/1108 atomic regions from SNP 80769 to 81369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,279 DEBUG Processing 388/831 atomic regions from SNP 116395 to 116995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,286 DEBUG Processing 380/853 atomic regions from SNP 113800 to 114400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,289 DEBUG Processing 299/461 atomic regions from SNP 89520 to 90120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:26,304 DEBUG Processing 293/996 atomic regions from SNP 87759 to 88359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,358 DEBUG Processing 169/630 atomic regions from SNP 50504 to 51104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,435 DEBUG Processing 271/1108 atomic regions from SNP 81069 to 81669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,504 DEBUG Processing 389/831 atomic regions from SNP 116695 to 117295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,507 DEBUG Processing 300/461 atomic regions from SNP 89820 to 90420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:26,511 DEBUG Processing 381/853 atomic regions from SNP 114100 to 114700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,549 DEBUG Processing 294/996 atomic regions from SNP 88059 to 88659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,577 DEBUG Processing 170/630 atomic regions from SNP 50804 to 51404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,696 DEBUG Processing 272/1108 atomic regions from SNP 81369 to 81969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,726 DEBUG Processing 390/831 atomic regions from SNP 116995 to 117595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,727 DEBUG Processing 301/461 atomic regions from SNP 90120 to 90720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:26,735 DEBUG Processing 382/853 atomic regions from SNP 114400 to 115000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,793 DEBUG Processing 171/630 atomic regions from SNP 51104 to 51704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,794 DEBUG Processing 295/996 atomic regions from SNP 88359 to 88959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,943 DEBUG Processing 302/461 atomic regions from SNP 90420 to 91020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:26,950 DEBUG Processing 391/831 atomic regions from SNP 117295 to 117895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,954 DEBUG Processing 273/1108 atomic regions from SNP 81669 to 82269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,960 DEBUG Processing 383/853 atomic regions from SNP 114700 to 115300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,013 DEBUG Processing 172/630 atomic regions from SNP 51404 to 52004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,036 DEBUG Processing 296/996 atomic regions from SNP 88659 to 89259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,160 DEBUG Processing 303/461 atomic regions from SNP 90720 to 91320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:27,180 DEBUG Processing 392/831 atomic regions from SNP 117595 to 118195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,190 DEBUG Processing 384/853 atomic regions from SNP 115000 to 115600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,220 DEBUG Processing 274/1108 atomic regions from SNP 81969 to 82569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,236 DEBUG Processing 173/630 atomic regions from SNP 51704 to 52304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,278 DEBUG Processing 297/996 atomic regions from SNP 88959 to 89559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,373 DEBUG Processing 304/461 atomic regions from SNP 91020 to 91620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:27,409 DEBUG Processing 393/831 atomic regions from SNP 117895 to 118495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,423 DEBUG Processing 385/853 atomic regions from SNP 115300 to 115900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,462 DEBUG Processing 174/630 atomic regions from SNP 52004 to 52604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,491 DEBUG Processing 275/1108 atomic regions from SNP 82269 to 82869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,524 DEBUG Processing 298/996 atomic regions from SNP 89259 to 89859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,583 DEBUG Processing 305/461 atomic regions from SNP 91320 to 91920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:27,636 DEBUG Processing 394/831 atomic regions from SNP 118195 to 118795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,650 DEBUG Processing 386/853 atomic regions from SNP 115600 to 116200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,687 DEBUG Processing 175/630 atomic regions from SNP 52304 to 52904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,746 DEBUG Processing 276/1108 atomic regions from SNP 82569 to 83169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,769 DEBUG Processing 299/996 atomic regions from SNP 89559 to 90159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,797 DEBUG Processing 306/461 atomic regions from SNP 91620 to 92220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:27,859 DEBUG Processing 395/831 atomic regions from SNP 118495 to 119095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,876 DEBUG Processing 387/853 atomic regions from SNP 115900 to 116500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,909 DEBUG Processing 176/630 atomic regions from SNP 52604 to 53204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,000 DEBUG Processing 277/1108 atomic regions from SNP 82869 to 83469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,017 DEBUG Processing 300/996 atomic regions from SNP 89859 to 90459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,019 DEBUG Processing 307/461 atomic regions from SNP 91920 to 92520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:28,086 DEBUG Processing 396/831 atomic regions from SNP 118795 to 119395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,102 DEBUG Processing 388/853 atomic regions from SNP 116200 to 116800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,130 DEBUG Processing 177/630 atomic regions from SNP 52904 to 53504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,252 DEBUG Processing 278/1108 atomic regions from SNP 83169 to 83769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,262 DEBUG Processing 301/996 atomic regions from SNP 90159 to 90759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,262 DEBUG Processing 308/461 atomic regions from SNP 92220 to 92820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:28,307 DEBUG Processing 397/831 atomic regions from SNP 119095 to 119695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,325 DEBUG Processing 389/853 atomic regions from SNP 116500 to 117100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,349 DEBUG Processing 178/630 atomic regions from SNP 53204 to 53804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,487 DEBUG Processing 309/461 atomic regions from SNP 92520 to 93120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:28,504 DEBUG Processing 279/1108 atomic regions from SNP 83469 to 84069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,510 DEBUG Processing 302/996 atomic regions from SNP 90459 to 91059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,530 DEBUG Processing 398/831 atomic regions from SNP 119395 to 119995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,547 DEBUG Processing 390/853 atomic regions from SNP 116800 to 117400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,569 DEBUG Processing 179/630 atomic regions from SNP 53504 to 54104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,704 DEBUG Processing 310/461 atomic regions from SNP 92820 to 93420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:28,759 DEBUG Processing 399/831 atomic regions from SNP 119695 to 120295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,763 DEBUG Processing 303/996 atomic regions from SNP 90759 to 91359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,766 DEBUG Processing 280/1108 atomic regions from SNP 83769 to 84369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,778 DEBUG Processing 391/853 atomic regions from SNP 117100 to 117700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,795 DEBUG Processing 180/630 atomic regions from SNP 53804 to 54404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,916 DEBUG Processing 311/461 atomic regions from SNP 93120 to 93720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:28,987 DEBUG Processing 400/831 atomic regions from SNP 119995 to 120595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,006 DEBUG Processing 392/853 atomic regions from SNP 117400 to 118000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,014 DEBUG Processing 304/996 atomic regions from SNP 91059 to 91659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,021 DEBUG Processing 181/630 atomic regions from SNP 54104 to 54704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,029 DEBUG Processing 281/1108 atomic regions from SNP 84069 to 84669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,124 DEBUG Processing 312/461 atomic regions from SNP 93420 to 94020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:29,213 DEBUG Processing 401/831 atomic regions from SNP 120295 to 120895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,231 DEBUG Processing 393/853 atomic regions from SNP 117700 to 118300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,243 DEBUG Processing 182/630 atomic regions from SNP 54404 to 55004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,264 DEBUG Processing 305/996 atomic regions from SNP 91359 to 91959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,287 DEBUG Processing 282/1108 atomic regions from SNP 84369 to 84969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,338 DEBUG Processing 313/461 atomic regions from SNP 93720 to 94320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:29,432 DEBUG Processing 402/831 atomic regions from SNP 120595 to 121195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,449 DEBUG Processing 394/853 atomic regions from SNP 118000 to 118600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,461 DEBUG Processing 183/630 atomic regions from SNP 54704 to 55304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,507 DEBUG Processing 306/996 atomic regions from SNP 91659 to 92259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,538 DEBUG Processing 283/1108 atomic regions from SNP 84669 to 85269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,549 DEBUG Processing 314/461 atomic regions from SNP 94020 to 94620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:29,654 DEBUG Processing 403/831 atomic regions from SNP 120895 to 121495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,673 DEBUG Processing 395/853 atomic regions from SNP 118300 to 118900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,683 DEBUG Processing 184/630 atomic regions from SNP 55004 to 55604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,753 DEBUG Processing 307/996 atomic regions from SNP 91959 to 92559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,766 DEBUG Processing 315/461 atomic regions from SNP 94320 to 94920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:29,791 DEBUG Processing 284/1108 atomic regions from SNP 84969 to 85569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,876 DEBUG Processing 404/831 atomic regions from SNP 121195 to 121795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,894 DEBUG Processing 396/853 atomic regions from SNP 118600 to 119200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,906 DEBUG Processing 185/630 atomic regions from SNP 55304 to 55904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,975 DEBUG Processing 316/461 atomic regions from SNP 94620 to 95220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:29,994 DEBUG Processing 308/996 atomic regions from SNP 92259 to 92859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,047 DEBUG Processing 285/1108 atomic regions from SNP 85269 to 85869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,104 DEBUG Processing 405/831 atomic regions from SNP 121495 to 122095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,122 DEBUG Processing 397/853 atomic regions from SNP 118900 to 119500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,131 DEBUG Processing 186/630 atomic regions from SNP 55604 to 56204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,188 DEBUG Processing 317/461 atomic regions from SNP 94920 to 95520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:30,236 DEBUG Processing 309/996 atomic regions from SNP 92559 to 93159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,304 DEBUG Processing 286/1108 atomic regions from SNP 85569 to 86169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,341 DEBUG Processing 406/831 atomic regions from SNP 121795 to 122395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,348 DEBUG Processing 398/853 atomic regions from SNP 119200 to 119800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,353 DEBUG Processing 187/630 atomic regions from SNP 55904 to 56504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,402 DEBUG Processing 318/461 atomic regions from SNP 95220 to 95820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:30,480 DEBUG Processing 310/996 atomic regions from SNP 92859 to 93459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,568 DEBUG Processing 287/1108 atomic regions from SNP 85869 to 86469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,569 DEBUG Processing 407/831 atomic regions from SNP 122095 to 122695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,579 DEBUG Processing 399/853 atomic regions from SNP 119500 to 120100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,581 DEBUG Processing 188/630 atomic regions from SNP 56204 to 56804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,619 DEBUG Processing 319/461 atomic regions from SNP 95520 to 96120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:30,723 DEBUG Processing 311/996 atomic regions from SNP 93159 to 93759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,794 DEBUG Processing 408/831 atomic regions from SNP 122395 to 122995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,806 DEBUG Processing 189/630 atomic regions from SNP 56504 to 57104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,806 DEBUG Processing 400/853 atomic regions from SNP 119800 to 120400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,829 DEBUG Processing 288/1108 atomic regions from SNP 86169 to 86769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,832 DEBUG Processing 320/461 atomic regions from SNP 95820 to 96420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:30,966 DEBUG Processing 312/996 atomic regions from SNP 93459 to 94059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,015 DEBUG Processing 409/831 atomic regions from SNP 122695 to 123295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,030 DEBUG Processing 190/630 atomic regions from SNP 56804 to 57404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,032 DEBUG Processing 401/853 atomic regions from SNP 120100 to 120700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,040 DEBUG Processing 321/461 atomic regions from SNP 96120 to 96720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:31,088 DEBUG Processing 289/1108 atomic regions from SNP 86469 to 87069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,209 DEBUG Processing 313/996 atomic regions from SNP 93759 to 94359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,236 DEBUG Processing 410/831 atomic regions from SNP 122995 to 123595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,252 DEBUG Processing 322/461 atomic regions from SNP 96420 to 97020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:31,253 DEBUG Processing 191/630 atomic regions from SNP 57104 to 57704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,257 DEBUG Processing 402/853 atomic regions from SNP 120400 to 121000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,348 DEBUG Processing 290/1108 atomic regions from SNP 86769 to 87369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,453 DEBUG Processing 314/996 atomic regions from SNP 94059 to 94659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,455 DEBUG Processing 411/831 atomic regions from SNP 123295 to 123895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,463 DEBUG Processing 323/461 atomic regions from SNP 96720 to 97320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:31,472 DEBUG Processing 192/630 atomic regions from SNP 57404 to 58004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,478 DEBUG Processing 403/853 atomic regions from SNP 120700 to 121300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,618 DEBUG Processing 291/1108 atomic regions from SNP 87069 to 87669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,677 DEBUG Processing 412/831 atomic regions from SNP 123595 to 124195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,678 DEBUG Processing 324/461 atomic regions from SNP 97020 to 97620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:31,691 DEBUG Processing 193/630 atomic regions from SNP 57704 to 58304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,697 DEBUG Processing 404/853 atomic regions from SNP 121000 to 121600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,698 DEBUG Processing 315/996 atomic regions from SNP 94359 to 94959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,889 DEBUG Processing 325/461 atomic regions from SNP 97320 to 97920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:31,898 DEBUG Processing 413/831 atomic regions from SNP 123895 to 124495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,904 DEBUG Processing 292/1108 atomic regions from SNP 87369 to 87969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,911 DEBUG Processing 194/630 atomic regions from SNP 58004 to 58604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,919 DEBUG Processing 405/853 atomic regions from SNP 121300 to 121900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,939 DEBUG Processing 316/996 atomic regions from SNP 94659 to 95259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,101 DEBUG Processing 326/461 atomic regions from SNP 97620 to 98220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:32,127 DEBUG Processing 414/831 atomic regions from SNP 124195 to 124795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,137 DEBUG Processing 195/630 atomic regions from SNP 58304 to 58904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,144 DEBUG Processing 406/853 atomic regions from SNP 121600 to 122200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,179 DEBUG Processing 293/1108 atomic regions from SNP 87669 to 88269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,184 DEBUG Processing 317/996 atomic regions from SNP 94959 to 95559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,314 DEBUG Processing 327/461 atomic regions from SNP 97920 to 98520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:32,349 DEBUG Processing 415/831 atomic regions from SNP 124495 to 125095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,361 DEBUG Processing 196/630 atomic regions from SNP 58604 to 59204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,365 DEBUG Processing 407/853 atomic regions from SNP 121900 to 122500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,424 DEBUG Processing 318/996 atomic regions from SNP 95259 to 95859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,431 DEBUG Processing 294/1108 atomic regions from SNP 87969 to 88569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,530 DEBUG Processing 328/461 atomic regions from SNP 98220 to 98820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:32,569 DEBUG Processing 416/831 atomic regions from SNP 124795 to 125395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,581 DEBUG Processing 197/630 atomic regions from SNP 58904 to 59504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,586 DEBUG Processing 408/853 atomic regions from SNP 122200 to 122800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,670 DEBUG Processing 319/996 atomic regions from SNP 95559 to 96159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,686 DEBUG Processing 295/1108 atomic regions from SNP 88269 to 88869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,751 DEBUG Processing 329/461 atomic regions from SNP 98520 to 99120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:32,790 DEBUG Processing 417/831 atomic regions from SNP 125095 to 125695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,802 DEBUG Processing 198/630 atomic regions from SNP 59204 to 59804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,806 DEBUG Processing 409/853 atomic regions from SNP 122500 to 123100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,914 DEBUG Processing 320/996 atomic regions from SNP 95859 to 96459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,941 DEBUG Processing 296/1108 atomic regions from SNP 88569 to 89169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,969 DEBUG Processing 330/461 atomic regions from SNP 98820 to 99420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:33,008 DEBUG Processing 418/831 atomic regions from SNP 125395 to 125995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,021 DEBUG Processing 199/630 atomic regions from SNP 59504 to 60104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,026 DEBUG Processing 410/853 atomic regions from SNP 122800 to 123400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,159 DEBUG Processing 321/996 atomic regions from SNP 96159 to 96759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,186 DEBUG Processing 331/461 atomic regions from SNP 99120 to 99720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:33,198 DEBUG Processing 297/1108 atomic regions from SNP 88869 to 89469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,230 DEBUG Processing 419/831 atomic regions from SNP 125695 to 126295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,242 DEBUG Processing 200/630 atomic regions from SNP 59804 to 60404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,245 DEBUG Processing 411/853 atomic regions from SNP 123100 to 123700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,405 DEBUG Processing 332/461 atomic regions from SNP 99420 to 100020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:33,408 DEBUG Processing 322/996 atomic regions from SNP 96459 to 97059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,450 DEBUG Processing 420/831 atomic regions from SNP 125995 to 126595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,457 DEBUG Processing 298/1108 atomic regions from SNP 89169 to 89769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,464 DEBUG Processing 201/630 atomic regions from SNP 60104 to 60704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,468 DEBUG Processing 412/853 atomic regions from SNP 123400 to 124000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,626 DEBUG Processing 333/461 atomic regions from SNP 99720 to 100320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:33,660 DEBUG Processing 323/996 atomic regions from SNP 96759 to 97359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,680 DEBUG Processing 421/831 atomic regions from SNP 126295 to 126895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,691 DEBUG Processing 202/630 atomic regions from SNP 60404 to 61004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,698 DEBUG Processing 413/853 atomic regions from SNP 123700 to 124300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,730 DEBUG Processing 299/1108 atomic regions from SNP 89469 to 90069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,842 DEBUG Processing 334/461 atomic regions from SNP 100020 to 100620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:33,907 DEBUG Processing 324/996 atomic regions from SNP 97059 to 97659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,909 DEBUG Processing 422/831 atomic regions from SNP 126595 to 127195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,921 DEBUG Processing 203/630 atomic regions from SNP 60704 to 61304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,931 DEBUG Processing 414/853 atomic regions from SNP 124000 to 124600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,993 DEBUG Processing 300/1108 atomic regions from SNP 89769 to 90369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,054 DEBUG Processing 335/461 atomic regions from SNP 100320 to 100920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:34,136 DEBUG Processing 423/831 atomic regions from SNP 126895 to 127495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,149 DEBUG Processing 204/630 atomic regions from SNP 61004 to 61604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,150 DEBUG Processing 325/996 atomic regions from SNP 97359 to 97959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,163 DEBUG Processing 415/853 atomic regions from SNP 124300 to 124900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,251 DEBUG Processing 301/1108 atomic regions from SNP 90069 to 90669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,268 DEBUG Processing 336/461 atomic regions from SNP 100620 to 101220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:34,361 DEBUG Processing 424/831 atomic regions from SNP 127195 to 127795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,379 DEBUG Processing 205/630 atomic regions from SNP 61304 to 61904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,393 DEBUG Processing 326/996 atomic regions from SNP 97659 to 98259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,394 DEBUG Processing 416/853 atomic regions from SNP 124600 to 125200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,482 DEBUG Processing 337/461 atomic regions from SNP 100920 to 101520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:34,509 DEBUG Processing 302/1108 atomic regions from SNP 90369 to 90969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,586 DEBUG Processing 425/831 atomic regions from SNP 127495 to 128095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,605 DEBUG Processing 206/630 atomic regions from SNP 61604 to 62204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,626 DEBUG Processing 417/853 atomic regions from SNP 124900 to 125500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,641 DEBUG Processing 327/996 atomic regions from SNP 97959 to 98559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,699 DEBUG Processing 338/461 atomic regions from SNP 101220 to 101820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:34,764 DEBUG Processing 303/1108 atomic regions from SNP 90669 to 91269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,807 DEBUG Processing 426/831 atomic regions from SNP 127795 to 128395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,829 DEBUG Processing 207/630 atomic regions from SNP 61904 to 62504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,858 DEBUG Processing 418/853 atomic regions from SNP 125200 to 125800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,889 DEBUG Processing 328/996 atomic regions from SNP 98259 to 98859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,914 DEBUG Processing 339/461 atomic regions from SNP 101520 to 102120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:35,018 DEBUG Processing 304/1108 atomic regions from SNP 90969 to 91569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,022 DEBUG Processing 427/831 atomic regions from SNP 128095 to 128695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,053 DEBUG Processing 208/630 atomic regions from SNP 62204 to 62804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,086 DEBUG Processing 419/853 atomic regions from SNP 125500 to 126100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,132 DEBUG Processing 340/461 atomic regions from SNP 101820 to 102420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:35,138 DEBUG Processing 329/996 atomic regions from SNP 98559 to 99159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,237 DEBUG Processing 428/831 atomic regions from SNP 128395 to 128995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,270 DEBUG Processing 305/1108 atomic regions from SNP 91269 to 91869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,275 DEBUG Processing 209/630 atomic regions from SNP 62504 to 63104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,316 DEBUG Processing 420/853 atomic regions from SNP 125800 to 126400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,351 DEBUG Processing 341/461 atomic regions from SNP 102120 to 102720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:35,386 DEBUG Processing 330/996 atomic regions from SNP 98859 to 99459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,452 DEBUG Processing 429/831 atomic regions from SNP 128695 to 129295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,496 DEBUG Processing 210/630 atomic regions from SNP 62804 to 63404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,527 DEBUG Processing 306/1108 atomic regions from SNP 91569 to 92169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,547 DEBUG Processing 421/853 atomic regions from SNP 126100 to 126700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,571 DEBUG Processing 342/461 atomic regions from SNP 102420 to 103020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:35,633 DEBUG Processing 331/996 atomic regions from SNP 99159 to 99759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,668 DEBUG Processing 430/831 atomic regions from SNP 128995 to 129595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,715 DEBUG Processing 211/630 atomic regions from SNP 63104 to 63704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,773 DEBUG Processing 422/853 atomic regions from SNP 126400 to 127000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,785 DEBUG Processing 307/1108 atomic regions from SNP 91869 to 92469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,790 DEBUG Processing 343/461 atomic regions from SNP 102720 to 103320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:35,880 DEBUG Processing 332/996 atomic regions from SNP 99459 to 100059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,890 DEBUG Processing 431/831 atomic regions from SNP 129295 to 129895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,931 DEBUG Processing 212/630 atomic regions from SNP 63404 to 64004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,997 DEBUG Processing 423/853 atomic regions from SNP 126700 to 127300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,006 DEBUG Processing 344/461 atomic regions from SNP 103020 to 103620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:36,045 DEBUG Processing 308/1108 atomic regions from SNP 92169 to 92769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,115 DEBUG Processing 432/831 atomic regions from SNP 129595 to 130195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,123 DEBUG Processing 333/996 atomic regions from SNP 99759 to 100359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,151 DEBUG Processing 213/630 atomic regions from SNP 63704 to 64304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,218 DEBUG Processing 345/461 atomic regions from SNP 103320 to 103920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:36,218 DEBUG Processing 424/853 atomic regions from SNP 127000 to 127600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,302 DEBUG Processing 309/1108 atomic regions from SNP 92469 to 93069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,341 DEBUG Processing 433/831 atomic regions from SNP 129895 to 130495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,370 DEBUG Processing 334/996 atomic regions from SNP 100059 to 100659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,371 DEBUG Processing 214/630 atomic regions from SNP 64004 to 64604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,427 DEBUG Processing 346/461 atomic regions from SNP 103620 to 104220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:36,436 DEBUG Processing 425/853 atomic regions from SNP 127300 to 127900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,562 DEBUG Processing 310/1108 atomic regions from SNP 92769 to 93369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,571 DEBUG Processing 434/831 atomic regions from SNP 130195 to 130795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,600 DEBUG Processing 215/630 atomic regions from SNP 64304 to 64904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,617 DEBUG Processing 335/996 atomic regions from SNP 100359 to 100959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,656 DEBUG Processing 426/853 atomic regions from SNP 127600 to 128200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,657 DEBUG Processing 347/461 atomic regions from SNP 103920 to 104520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:36,798 DEBUG Processing 435/831 atomic regions from SNP 130495 to 131095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,829 DEBUG Processing 216/630 atomic regions from SNP 64604 to 65204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,829 DEBUG Processing 311/1108 atomic regions from SNP 93069 to 93669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,867 DEBUG Processing 336/996 atomic regions from SNP 100659 to 101259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,878 DEBUG Processing 348/461 atomic regions from SNP 104220 to 104820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:36,878 DEBUG Processing 427/853 atomic regions from SNP 127900 to 128500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,024 DEBUG Processing 436/831 atomic regions from SNP 130795 to 131395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,061 DEBUG Processing 217/630 atomic regions from SNP 64904 to 65504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,098 DEBUG Processing 349/461 atomic regions from SNP 104520 to 105120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:37,103 DEBUG Processing 312/1108 atomic regions from SNP 93369 to 93969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,107 DEBUG Processing 428/853 atomic regions from SNP 128200 to 128800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,115 DEBUG Processing 337/996 atomic regions from SNP 100959 to 101559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,252 DEBUG Processing 437/831 atomic regions from SNP 131095 to 131695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,292 DEBUG Processing 218/630 atomic regions from SNP 65204 to 65804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,315 DEBUG Processing 350/461 atomic regions from SNP 104820 to 105420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:37,337 DEBUG Processing 429/853 atomic regions from SNP 128500 to 129100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,364 DEBUG Processing 338/996 atomic regions from SNP 101259 to 101859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,368 DEBUG Processing 313/1108 atomic regions from SNP 93669 to 94269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,468 DEBUG Processing 438/831 atomic regions from SNP 131395 to 131995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,516 DEBUG Processing 219/630 atomic regions from SNP 65504 to 66104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,530 DEBUG Processing 351/461 atomic regions from SNP 105120 to 105720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:37,573 DEBUG Processing 430/853 atomic regions from SNP 128800 to 129400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,608 DEBUG Processing 339/996 atomic regions from SNP 101559 to 102159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,629 DEBUG Processing 314/1108 atomic regions from SNP 93969 to 94569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,687 DEBUG Processing 439/831 atomic regions from SNP 131695 to 132295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,739 DEBUG Processing 220/630 atomic regions from SNP 65804 to 66404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,752 DEBUG Processing 352/461 atomic regions from SNP 105420 to 106020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:37,802 DEBUG Processing 431/853 atomic regions from SNP 129100 to 129700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,851 DEBUG Processing 340/996 atomic regions from SNP 101859 to 102459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,889 DEBUG Processing 315/1108 atomic regions from SNP 94269 to 94869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,908 DEBUG Processing 440/831 atomic regions from SNP 131995 to 132595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,961 DEBUG Processing 221/630 atomic regions from SNP 66104 to 66704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,972 DEBUG Processing 353/461 atomic regions from SNP 105720 to 106320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:38,033 DEBUG Processing 432/853 atomic regions from SNP 129400 to 130000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,098 DEBUG Processing 341/996 atomic regions from SNP 102159 to 102759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,129 DEBUG Processing 441/831 atomic regions from SNP 132295 to 132895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,158 DEBUG Processing 316/1108 atomic regions from SNP 94569 to 95169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,183 DEBUG Processing 222/630 atomic regions from SNP 66404 to 67004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,196 DEBUG Processing 354/461 atomic regions from SNP 106020 to 106620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:38,256 DEBUG Processing 433/853 atomic regions from SNP 129700 to 130300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,346 DEBUG Processing 342/996 atomic regions from SNP 102459 to 103059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,350 DEBUG Processing 442/831 atomic regions from SNP 132595 to 133195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,407 DEBUG Processing 223/630 atomic regions from SNP 66704 to 67304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,408 DEBUG Processing 355/461 atomic regions from SNP 106320 to 106920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:38,426 DEBUG Processing 317/1108 atomic regions from SNP 94869 to 95469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,477 DEBUG Processing 434/853 atomic regions from SNP 130000 to 130600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,570 DEBUG Processing 443/831 atomic regions from SNP 132895 to 133495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,592 DEBUG Processing 343/996 atomic regions from SNP 102759 to 103359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,622 DEBUG Processing 356/461 atomic regions from SNP 106620 to 107220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:38,629 DEBUG Processing 224/630 atomic regions from SNP 67004 to 67604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,695 DEBUG Processing 318/1108 atomic regions from SNP 95169 to 95769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,702 DEBUG Processing 435/853 atomic regions from SNP 130300 to 130900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,789 DEBUG Processing 444/831 atomic regions from SNP 133195 to 133795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,837 DEBUG Processing 357/461 atomic regions from SNP 106920 to 107520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:38,839 DEBUG Processing 344/996 atomic regions from SNP 103059 to 103659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,852 DEBUG Processing 225/630 atomic regions from SNP 67304 to 67904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,926 DEBUG Processing 436/853 atomic regions from SNP 130600 to 131200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,958 DEBUG Processing 319/1108 atomic regions from SNP 95469 to 96069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,007 DEBUG Processing 445/831 atomic regions from SNP 133495 to 134095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,058 DEBUG Processing 358/461 atomic regions from SNP 107220 to 107820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:39,074 DEBUG Processing 226/630 atomic regions from SNP 67604 to 68204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,086 DEBUG Processing 345/996 atomic regions from SNP 103359 to 103959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,147 DEBUG Processing 437/853 atomic regions from SNP 130900 to 131500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,215 DEBUG Processing 320/1108 atomic regions from SNP 95769 to 96369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,220 DEBUG Processing 446/831 atomic regions from SNP 133795 to 134395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,289 DEBUG Processing 359/461 atomic regions from SNP 107520 to 108120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:39,295 DEBUG Processing 227/630 atomic regions from SNP 67904 to 68504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,332 DEBUG Processing 346/996 atomic regions from SNP 103659 to 104259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,370 DEBUG Processing 438/853 atomic regions from SNP 131200 to 131800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,438 DEBUG Processing 447/831 atomic regions from SNP 134095 to 134695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,472 DEBUG Processing 321/1108 atomic regions from SNP 96069 to 96669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,517 DEBUG Processing 228/630 atomic regions from SNP 68204 to 68804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,536 DEBUG Processing 360/461 atomic regions from SNP 107820 to 108420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:39,577 DEBUG Processing 347/996 atomic regions from SNP 103959 to 104559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,596 DEBUG Processing 439/853 atomic regions from SNP 131500 to 132100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,654 DEBUG Processing 448/831 atomic regions from SNP 134395 to 134995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,724 DEBUG Processing 322/1108 atomic regions from SNP 96369 to 96969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,737 DEBUG Processing 229/630 atomic regions from SNP 68504 to 69104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,767 DEBUG Processing 361/461 atomic regions from SNP 108120 to 108720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:39,822 DEBUG Processing 440/853 atomic regions from SNP 131800 to 132400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,824 DEBUG Processing 348/996 atomic regions from SNP 104259 to 104859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,871 DEBUG Processing 449/831 atomic regions from SNP 134695 to 135295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,954 DEBUG Processing 230/630 atomic regions from SNP 68804 to 69404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,975 DEBUG Processing 323/1108 atomic regions from SNP 96669 to 97269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,979 DEBUG Processing 362/461 atomic regions from SNP 108420 to 109020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:40,059 DEBUG Processing 441/853 atomic regions from SNP 132100 to 132700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,076 DEBUG Processing 349/996 atomic regions from SNP 104559 to 105159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,098 DEBUG Processing 450/831 atomic regions from SNP 134995 to 135595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,171 DEBUG Processing 231/630 atomic regions from SNP 69104 to 69704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,195 DEBUG Processing 363/461 atomic regions from SNP 108720 to 109320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:40,227 DEBUG Processing 324/1108 atomic regions from SNP 96969 to 97569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,305 DEBUG Processing 442/853 atomic regions from SNP 132400 to 133000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,325 DEBUG Processing 451/831 atomic regions from SNP 135295 to 135895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,327 DEBUG Processing 350/996 atomic regions from SNP 104859 to 105459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,394 DEBUG Processing 232/630 atomic regions from SNP 69404 to 70004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,405 DEBUG Processing 364/461 atomic regions from SNP 109020 to 109620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:40,479 DEBUG Processing 325/1108 atomic regions from SNP 97269 to 97869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,550 DEBUG Processing 443/853 atomic regions from SNP 132700 to 133300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,552 DEBUG Processing 452/831 atomic regions from SNP 135595 to 136195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,580 DEBUG Processing 351/996 atomic regions from SNP 105159 to 105759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,612 DEBUG Processing 233/630 atomic regions from SNP 69704 to 70304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,624 DEBUG Processing 365/461 atomic regions from SNP 109320 to 109920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:40,732 DEBUG Processing 326/1108 atomic regions from SNP 97569 to 98169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,782 DEBUG Processing 453/831 atomic regions from SNP 135895 to 136495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,783 DEBUG Processing 444/853 atomic regions from SNP 133000 to 133600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,828 DEBUG Processing 352/996 atomic regions from SNP 105459 to 106059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,837 DEBUG Processing 234/630 atomic regions from SNP 70004 to 70604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,838 DEBUG Processing 366/461 atomic regions from SNP 109620 to 110220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:40,988 DEBUG Processing 327/1108 atomic regions from SNP 97869 to 98469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,013 DEBUG Processing 454/831 atomic regions from SNP 136195 to 136795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,015 DEBUG Processing 445/853 atomic regions from SNP 133300 to 133900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,055 DEBUG Processing 367/461 atomic regions from SNP 109920 to 110520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:41,067 DEBUG Processing 235/630 atomic regions from SNP 70304 to 70904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,079 DEBUG Processing 353/996 atomic regions from SNP 105759 to 106359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,245 DEBUG Processing 455/831 atomic regions from SNP 136495 to 137095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,250 DEBUG Processing 328/1108 atomic regions from SNP 98169 to 98769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,251 DEBUG Processing 446/853 atomic regions from SNP 133600 to 134200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,273 DEBUG Processing 368/461 atomic regions from SNP 110220 to 110820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:41,304 DEBUG Processing 236/630 atomic regions from SNP 70604 to 71204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,326 DEBUG Processing 354/996 atomic regions from SNP 106059 to 106659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,473 DEBUG Processing 456/831 atomic regions from SNP 136795 to 137395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,482 DEBUG Processing 447/853 atomic regions from SNP 133900 to 134500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,489 DEBUG Processing 369/461 atomic regions from SNP 110520 to 111120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:41,513 DEBUG Processing 329/1108 atomic regions from SNP 98469 to 99069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,537 DEBUG Processing 237/630 atomic regions from SNP 70904 to 71504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,572 DEBUG Processing 355/996 atomic regions from SNP 106359 to 106959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,696 DEBUG Processing 457/831 atomic regions from SNP 137095 to 137695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,704 DEBUG Processing 370/461 atomic regions from SNP 110820 to 111420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:41,708 DEBUG Processing 448/853 atomic regions from SNP 134200 to 134800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,768 DEBUG Processing 238/630 atomic regions from SNP 71204 to 71804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,777 DEBUG Processing 330/1108 atomic regions from SNP 98769 to 99369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,816 DEBUG Processing 356/996 atomic regions from SNP 106659 to 107259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,916 DEBUG Processing 458/831 atomic regions from SNP 137395 to 137995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,917 DEBUG Processing 371/461 atomic regions from SNP 111120 to 111720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:41,932 DEBUG Processing 449/853 atomic regions from SNP 134500 to 135100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,992 DEBUG Processing 239/630 atomic regions from SNP 71504 to 72104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,039 DEBUG Processing 331/1108 atomic regions from SNP 99069 to 99669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,063 DEBUG Processing 357/996 atomic regions from SNP 106959 to 107559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,136 DEBUG Processing 372/461 atomic regions from SNP 111420 to 112020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:42,138 DEBUG Processing 459/831 atomic regions from SNP 137695 to 138295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,154 DEBUG Processing 450/853 atomic regions from SNP 134800 to 135400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,213 DEBUG Processing 240/630 atomic regions from SNP 71804 to 72404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,298 DEBUG Processing 332/1108 atomic regions from SNP 99369 to 99969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,306 DEBUG Processing 358/996 atomic regions from SNP 107259 to 107859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,357 DEBUG Processing 373/461 atomic regions from SNP 111720 to 112320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:42,363 DEBUG Processing 460/831 atomic regions from SNP 137995 to 138595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,380 DEBUG Processing 451/853 atomic regions from SNP 135100 to 135700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,436 DEBUG Processing 241/630 atomic regions from SNP 72104 to 72704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,550 DEBUG Processing 359/996 atomic regions from SNP 107559 to 108159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,554 DEBUG Processing 333/1108 atomic regions from SNP 99669 to 100269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,587 DEBUG Processing 461/831 atomic regions from SNP 138295 to 138895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,587 DEBUG Processing 374/461 atomic regions from SNP 112020 to 112620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:42,609 DEBUG Processing 452/853 atomic regions from SNP 135400 to 136000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,660 DEBUG Processing 242/630 atomic regions from SNP 72404 to 73004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,798 DEBUG Processing 360/996 atomic regions from SNP 107859 to 108459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,809 DEBUG Processing 462/831 atomic regions from SNP 138595 to 139195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,809 DEBUG Processing 375/461 atomic regions from SNP 112320 to 112920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:42,812 DEBUG Processing 334/1108 atomic regions from SNP 99969 to 100569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,857 DEBUG Processing 453/853 atomic regions from SNP 135700 to 136300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,886 DEBUG Processing 243/630 atomic regions from SNP 72704 to 73304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,030 DEBUG Processing 376/461 atomic regions from SNP 112620 to 113220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:43,031 DEBUG Processing 463/831 atomic regions from SNP 138895 to 139495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,049 DEBUG Processing 361/996 atomic regions from SNP 108159 to 108759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,070 DEBUG Processing 335/1108 atomic regions from SNP 100269 to 100869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,114 DEBUG Processing 244/630 atomic regions from SNP 73004 to 73604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,116 DEBUG Processing 454/853 atomic regions from SNP 136000 to 136600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,247 DEBUG Processing 377/461 atomic regions from SNP 112920 to 113520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:43,249 DEBUG Processing 464/831 atomic regions from SNP 139195 to 139795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,299 DEBUG Processing 362/996 atomic regions from SNP 108459 to 109059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,330 DEBUG Processing 336/1108 atomic regions from SNP 100569 to 101169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,344 DEBUG Processing 245/630 atomic regions from SNP 73304 to 73904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,375 DEBUG Processing 455/853 atomic regions from SNP 136300 to 136900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,462 DEBUG Processing 378/461 atomic regions from SNP 113220 to 113820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:43,465 DEBUG Processing 465/831 atomic regions from SNP 139495 to 140095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,547 DEBUG Processing 363/996 atomic regions from SNP 108759 to 109359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,575 DEBUG Processing 246/630 atomic regions from SNP 73604 to 74204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,593 DEBUG Processing 337/1108 atomic regions from SNP 100869 to 101469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,638 DEBUG Processing 456/853 atomic regions from SNP 136600 to 137200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,679 DEBUG Processing 379/461 atomic regions from SNP 113520 to 114120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:43,684 DEBUG Processing 466/831 atomic regions from SNP 139795 to 140395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,791 DEBUG Processing 364/996 atomic regions from SNP 109059 to 109659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,801 DEBUG Processing 247/630 atomic regions from SNP 73904 to 74504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,871 DEBUG Processing 338/1108 atomic regions from SNP 101169 to 101769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,894 DEBUG Processing 380/461 atomic regions from SNP 113820 to 114420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:43,902 DEBUG Processing 457/853 atomic regions from SNP 136900 to 137500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,905 DEBUG Processing 467/831 atomic regions from SNP 140095 to 140695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,027 DEBUG Processing 248/630 atomic regions from SNP 74204 to 74804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,034 DEBUG Processing 365/996 atomic regions from SNP 109359 to 109959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,105 DEBUG Processing 381/461 atomic regions from SNP 114120 to 114720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:44,128 DEBUG Processing 468/831 atomic regions from SNP 140395 to 140995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,131 DEBUG Processing 339/1108 atomic regions from SNP 101469 to 102069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,159 DEBUG Processing 458/853 atomic regions from SNP 137200 to 137800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,253 DEBUG Processing 249/630 atomic regions from SNP 74504 to 75104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,279 DEBUG Processing 366/996 atomic regions from SNP 109659 to 110259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,317 DEBUG Processing 382/461 atomic regions from SNP 114420 to 115020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:44,348 DEBUG Processing 469/831 atomic regions from SNP 140695 to 141295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,404 DEBUG Processing 459/853 atomic regions from SNP 137500 to 138100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,425 DEBUG Processing 340/1108 atomic regions from SNP 101769 to 102369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,483 DEBUG Processing 250/630 atomic regions from SNP 74804 to 75404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,528 DEBUG Processing 367/996 atomic regions from SNP 109959 to 110559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,539 DEBUG Processing 383/461 atomic regions from SNP 114720 to 115320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:44,568 DEBUG Processing 470/831 atomic regions from SNP 140995 to 141595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,649 DEBUG Processing 460/853 atomic regions from SNP 137800 to 138400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,681 DEBUG Processing 341/1108 atomic regions from SNP 102069 to 102669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,711 DEBUG Processing 251/630 atomic regions from SNP 75104 to 75704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,756 DEBUG Processing 384/461 atomic regions from SNP 115020 to 115620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:44,777 DEBUG Processing 368/996 atomic regions from SNP 110259 to 110859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,789 DEBUG Processing 471/831 atomic regions from SNP 141295 to 141895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,903 DEBUG Processing 461/853 atomic regions from SNP 138100 to 138700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,938 DEBUG Processing 342/1108 atomic regions from SNP 102369 to 102969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,939 DEBUG Processing 252/630 atomic regions from SNP 75404 to 76004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,975 DEBUG Processing 385/461 atomic regions from SNP 115320 to 115920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:45,009 DEBUG Processing 472/831 atomic regions from SNP 141595 to 142195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,024 DEBUG Processing 369/996 atomic regions from SNP 110559 to 111159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,165 DEBUG Processing 253/630 atomic regions from SNP 75704 to 76304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,166 DEBUG Processing 462/853 atomic regions from SNP 138400 to 139000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,200 DEBUG Processing 386/461 atomic regions from SNP 115620 to 116220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:45,204 DEBUG Processing 343/1108 atomic regions from SNP 102669 to 103269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,238 DEBUG Processing 473/831 atomic regions from SNP 141895 to 142495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,276 DEBUG Processing 370/996 atomic regions from SNP 110859 to 111459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,389 DEBUG Processing 254/630 atomic regions from SNP 76004 to 76604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,417 DEBUG Processing 387/461 atomic regions from SNP 115920 to 116520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:45,428 DEBUG Processing 463/853 atomic regions from SNP 138700 to 139300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,465 DEBUG Processing 474/831 atomic regions from SNP 142195 to 142795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,468 DEBUG Processing 344/1108 atomic regions from SNP 102969 to 103569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,527 DEBUG Processing 371/996 atomic regions from SNP 111159 to 111759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,614 DEBUG Processing 255/630 atomic regions from SNP 76304 to 76904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,633 DEBUG Processing 388/461 atomic regions from SNP 116220 to 116820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:45,669 DEBUG Processing 464/853 atomic regions from SNP 139000 to 139600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,688 DEBUG Processing 475/831 atomic regions from SNP 142495 to 143095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,726 DEBUG Processing 345/1108 atomic regions from SNP 103269 to 103869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,768 DEBUG Processing 372/996 atomic regions from SNP 111459 to 112059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,839 DEBUG Processing 256/630 atomic regions from SNP 76604 to 77204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,848 DEBUG Processing 389/461 atomic regions from SNP 116520 to 117120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:45,906 DEBUG Processing 476/831 atomic regions from SNP 142795 to 143395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,910 DEBUG Processing 465/853 atomic regions from SNP 139300 to 139900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,979 DEBUG Processing 346/1108 atomic regions from SNP 103569 to 104169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,009 DEBUG Processing 373/996 atomic regions from SNP 111759 to 112359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,063 DEBUG Processing 390/461 atomic regions from SNP 116820 to 117420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:46,067 DEBUG Processing 257/630 atomic regions from SNP 76904 to 77504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,125 DEBUG Processing 477/831 atomic regions from SNP 143095 to 143695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,147 DEBUG Processing 466/853 atomic regions from SNP 139600 to 140200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,240 DEBUG Processing 347/1108 atomic regions from SNP 103869 to 104469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,261 DEBUG Processing 374/996 atomic regions from SNP 112059 to 112659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,286 DEBUG Processing 391/461 atomic regions from SNP 117120 to 117720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:46,301 DEBUG Processing 258/630 atomic regions from SNP 77204 to 77804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,353 DEBUG Processing 478/831 atomic regions from SNP 143395 to 143995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,387 DEBUG Processing 467/853 atomic regions from SNP 139900 to 140500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,508 DEBUG Processing 348/1108 atomic regions from SNP 104169 to 104769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,511 DEBUG Processing 392/461 atomic regions from SNP 117420 to 118020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:46,516 DEBUG Processing 375/996 atomic regions from SNP 112359 to 112959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,534 DEBUG Processing 259/630 atomic regions from SNP 77504 to 78104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,582 DEBUG Processing 479/831 atomic regions from SNP 143695 to 144295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,644 DEBUG Processing 468/853 atomic regions from SNP 140200 to 140800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,735 DEBUG Processing 393/461 atomic regions from SNP 117720 to 118320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:46,766 DEBUG Processing 260/630 atomic regions from SNP 77804 to 78404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,773 DEBUG Processing 376/996 atomic regions from SNP 112659 to 113259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,797 DEBUG Processing 349/1108 atomic regions from SNP 104469 to 105069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,808 DEBUG Processing 480/831 atomic regions from SNP 143995 to 144595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,903 DEBUG Processing 469/853 atomic regions from SNP 140500 to 141100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,956 DEBUG Processing 394/461 atomic regions from SNP 118020 to 118620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:46,992 DEBUG Processing 261/630 atomic regions from SNP 78104 to 78704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,027 DEBUG Processing 377/996 atomic regions from SNP 112959 to 113559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,038 DEBUG Processing 481/831 atomic regions from SNP 144295 to 144895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,092 DEBUG Processing 350/1108 atomic regions from SNP 104769 to 105369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,164 DEBUG Processing 470/853 atomic regions from SNP 140800 to 141400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,173 DEBUG Processing 395/461 atomic regions from SNP 118320 to 118920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:47,218 DEBUG Processing 262/630 atomic regions from SNP 78404 to 79004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,262 DEBUG Processing 482/831 atomic regions from SNP 144595 to 145195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,279 DEBUG Processing 378/996 atomic regions from SNP 113259 to 113859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,356 DEBUG Processing 351/1108 atomic regions from SNP 105069 to 105669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,395 DEBUG Processing 396/461 atomic regions from SNP 118620 to 119220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:47,397 DEBUG Processing 471/853 atomic regions from SNP 141100 to 141700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,446 DEBUG Processing 263/630 atomic regions from SNP 78704 to 79304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,486 DEBUG Processing 483/831 atomic regions from SNP 144895 to 145495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,531 DEBUG Processing 379/996 atomic regions from SNP 113559 to 114159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,623 DEBUG Processing 397/461 atomic regions from SNP 118920 to 119520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:47,632 DEBUG Processing 472/853 atomic regions from SNP 141400 to 142000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,643 DEBUG Processing 352/1108 atomic regions from SNP 105369 to 105969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,676 DEBUG Processing 264/630 atomic regions from SNP 79004 to 79604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,717 DEBUG Processing 484/831 atomic regions from SNP 145195 to 145795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,789 DEBUG Processing 380/996 atomic regions from SNP 113859 to 114459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,851 DEBUG Processing 398/461 atomic regions from SNP 119220 to 119820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:47,864 DEBUG Processing 473/853 atomic regions from SNP 141700 to 142300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,907 DEBUG Processing 265/630 atomic regions from SNP 79304 to 79904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,939 DEBUG Processing 353/1108 atomic regions from SNP 105669 to 106269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,966 DEBUG Processing 485/831 atomic regions from SNP 145495 to 146095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,047 DEBUG Processing 381/996 atomic regions from SNP 114159 to 114759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,074 DEBUG Processing 399/461 atomic regions from SNP 119520 to 120120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:48,099 DEBUG Processing 474/853 atomic regions from SNP 142000 to 142600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,141 DEBUG Processing 266/630 atomic regions from SNP 79604 to 80204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,205 DEBUG Processing 486/831 atomic regions from SNP 145795 to 146395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,215 DEBUG Processing 354/1108 atomic regions from SNP 105969 to 106569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,321 DEBUG Processing 400/461 atomic regions from SNP 119820 to 120420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:48,326 DEBUG Processing 382/996 atomic regions from SNP 114459 to 115059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,337 DEBUG Processing 475/853 atomic regions from SNP 142300 to 142900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,376 DEBUG Processing 267/630 atomic regions from SNP 79904 to 80504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,439 DEBUG Processing 487/831 atomic regions from SNP 146095 to 146695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,484 DEBUG Processing 355/1108 atomic regions from SNP 106269 to 106869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,587 DEBUG Processing 401/461 atomic regions from SNP 120120 to 120720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:48,599 DEBUG Processing 476/853 atomic regions from SNP 142600 to 143200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,639 DEBUG Processing 268/630 atomic regions from SNP 80204 to 80804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,648 DEBUG Processing 383/996 atomic regions from SNP 114759 to 115359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,700 DEBUG Processing 488/831 atomic regions from SNP 146395 to 146995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,775 DEBUG Processing 356/1108 atomic regions from SNP 106569 to 107169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,934 DEBUG Processing 402/461 atomic regions from SNP 120420 to 121020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:48,959 DEBUG Processing 477/853 atomic regions from SNP 142900 to 143500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,054 DEBUG Processing 269/630 atomic regions from SNP 80504 to 81104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,083 DEBUG Processing 384/996 atomic regions from SNP 115059 to 115659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,097 DEBUG Processing 489/831 atomic regions from SNP 146695 to 147295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,166 DEBUG Processing 357/1108 atomic regions from SNP 106869 to 107469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,192 DEBUG Processing 403/461 atomic regions from SNP 120720 to 121320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:49,219 DEBUG Processing 478/853 atomic regions from SNP 143200 to 143800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,362 DEBUG Processing 270/630 atomic regions from SNP 80804 to 81404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,446 DEBUG Processing 385/996 atomic regions from SNP 115359 to 115959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,454 DEBUG Processing 490/831 atomic regions from SNP 146995 to 147595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,557 DEBUG Processing 404/461 atomic regions from SNP 121020 to 121620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:49,570 DEBUG Processing 358/1108 atomic regions from SNP 107169 to 107769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,577 DEBUG Processing 479/853 atomic regions from SNP 143500 to 144100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,639 DEBUG Processing 271/630 atomic regions from SNP 81104 to 81704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,687 DEBUG Processing 491/831 atomic regions from SNP 147295 to 147895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,722 DEBUG Processing 386/996 atomic regions from SNP 115659 to 116259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,799 DEBUG Processing 405/461 atomic regions from SNP 121320 to 121920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:49,856 DEBUG Processing 480/853 atomic regions from SNP 143800 to 144400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,879 DEBUG Processing 359/1108 atomic regions from SNP 107469 to 108069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,961 DEBUG Processing 272/630 atomic regions from SNP 81404 to 82004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,993 DEBUG Processing 492/831 atomic regions from SNP 147595 to 148195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,058 DEBUG Processing 387/996 atomic regions from SNP 115959 to 116559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,073 DEBUG Processing 406/461 atomic regions from SNP 121620 to 122220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:50,112 DEBUG Processing 481/853 atomic regions from SNP 144100 to 144700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,196 DEBUG Processing 360/1108 atomic regions from SNP 107769 to 108369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,206 DEBUG Processing 273/630 atomic regions from SNP 81704 to 82304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,244 DEBUG Processing 493/831 atomic regions from SNP 147895 to 148495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,307 DEBUG Processing 407/461 atomic regions from SNP 121920 to 122520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:50,322 DEBUG Processing 388/996 atomic regions from SNP 116259 to 116859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,345 DEBUG Processing 482/853 atomic regions from SNP 144400 to 145000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,449 DEBUG Processing 274/630 atomic regions from SNP 82004 to 82604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,476 DEBUG Processing 361/1108 atomic regions from SNP 108069 to 108669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,483 DEBUG Processing 494/831 atomic regions from SNP 148195 to 148795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,543 DEBUG Processing 408/461 atomic regions from SNP 122220 to 122820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:50,582 DEBUG Processing 483/853 atomic regions from SNP 144700 to 145300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,589 DEBUG Processing 389/996 atomic regions from SNP 116559 to 117159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,765 DEBUG Processing 275/630 atomic regions from SNP 82304 to 82904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,790 DEBUG Processing 495/831 atomic regions from SNP 148495 to 149095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,821 DEBUG Processing 362/1108 atomic regions from SNP 108369 to 108969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,858 DEBUG Processing 409/461 atomic regions from SNP 122520 to 123120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:50,890 DEBUG Processing 484/853 atomic regions from SNP 145000 to 145600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,923 DEBUG Processing 390/996 atomic regions from SNP 116859 to 117459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,031 DEBUG Processing 276/630 atomic regions from SNP 82604 to 83204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,038 DEBUG Processing 496/831 atomic regions from SNP 148795 to 149395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,093 DEBUG Processing 410/461 atomic regions from SNP 122820 to 123420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:51,113 DEBUG Processing 363/1108 atomic regions from SNP 108669 to 109269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,145 DEBUG Processing 485/853 atomic regions from SNP 145300 to 145900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,186 DEBUG Processing 391/996 atomic regions from SNP 117159 to 117759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,257 DEBUG Processing 277/630 atomic regions from SNP 82904 to 83504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,263 DEBUG Processing 497/831 atomic regions from SNP 149095 to 149695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,322 DEBUG Processing 411/461 atomic regions from SNP 123120 to 123720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:51,386 DEBUG Processing 486/853 atomic regions from SNP 145600 to 146200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,391 DEBUG Processing 364/1108 atomic regions from SNP 108969 to 109569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,440 DEBUG Processing 392/996 atomic regions from SNP 117459 to 118059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,482 DEBUG Processing 278/630 atomic regions from SNP 83204 to 83804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,485 DEBUG Processing 498/831 atomic regions from SNP 149395 to 149995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,547 DEBUG Processing 412/461 atomic regions from SNP 123420 to 124020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:51,628 DEBUG Processing 487/853 atomic regions from SNP 145900 to 146500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,666 DEBUG Processing 365/1108 atomic regions from SNP 109269 to 109869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,700 DEBUG Processing 393/996 atomic regions from SNP 117759 to 118359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,715 DEBUG Processing 499/831 atomic regions from SNP 149695 to 150295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,716 DEBUG Processing 279/630 atomic regions from SNP 83504 to 84104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,772 DEBUG Processing 413/461 atomic regions from SNP 123720 to 124320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:51,866 DEBUG Processing 488/853 atomic regions from SNP 146200 to 146800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,949 DEBUG Processing 366/1108 atomic regions from SNP 109569 to 110169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,009 DEBUG Processing 280/630 atomic regions from SNP 83804 to 84404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,010 DEBUG Processing 500/831 atomic regions from SNP 149995 to 150595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,028 DEBUG Processing 394/996 atomic regions from SNP 118059 to 118659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,056 DEBUG Processing 414/461 atomic regions from SNP 124020 to 124620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:52,154 DEBUG Processing 489/853 atomic regions from SNP 146500 to 147100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,276 DEBUG Processing 501/831 atomic regions from SNP 150295 to 150895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,282 DEBUG Processing 281/630 atomic regions from SNP 84104 to 84704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,291 DEBUG Processing 367/1108 atomic regions from SNP 109869 to 110469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,327 DEBUG Processing 415/461 atomic regions from SNP 124320 to 124920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:52,331 DEBUG Processing 395/996 atomic regions from SNP 118359 to 118959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,422 DEBUG Processing 490/853 atomic regions from SNP 146800 to 147400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,568 DEBUG Processing 282/630 atomic regions from SNP 84404 to 85004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,569 DEBUG Processing 502/831 atomic regions from SNP 150595 to 151195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,618 DEBUG Processing 368/1108 atomic regions from SNP 110169 to 110769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,634 DEBUG Processing 416/461 atomic regions from SNP 124620 to 125220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:52,655 DEBUG Processing 396/996 atomic regions from SNP 118659 to 119259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,696 DEBUG Processing 491/853 atomic regions from SNP 147100 to 147700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,918 DEBUG Processing 503/831 atomic regions from SNP 150895 to 151495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,924 DEBUG Processing 283/630 atomic regions from SNP 84704 to 85304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,992 DEBUG Processing 369/1108 atomic regions from SNP 110469 to 111069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,995 DEBUG Processing 417/461 atomic regions from SNP 124920 to 125520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:53,026 DEBUG Processing 397/996 atomic regions from SNP 118959 to 119559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,040 DEBUG Processing 492/853 atomic regions from SNP 147400 to 148000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,221 DEBUG Processing 504/831 atomic regions from SNP 151195 to 151795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,226 DEBUG Processing 284/630 atomic regions from SNP 85004 to 85604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:53,414 DEBUG Processing 418/461 atomic regions from SNP 125220 to 125820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:53,436 DEBUG Processing 370/1108 atomic regions from SNP 110769 to 111369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,474 DEBUG Processing 398/996 atomic regions from SNP 119259 to 119859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,487 DEBUG Processing 493/853 atomic regions from SNP 147700 to 148300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,570 DEBUG Processing 505/831 atomic regions from SNP 151495 to 152095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,575 DEBUG Processing 285/630 atomic regions from SNP 85304 to 85904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:53,818 DEBUG Processing 419/461 atomic regions from SNP 125520 to 126120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:53,879 DEBUG Processing 371/1108 atomic regions from SNP 111069 to 111669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,906 DEBUG Processing 399/996 atomic regions from SNP 119559 to 120159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,937 DEBUG Processing 494/853 atomic regions from SNP 148000 to 148600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,971 DEBUG Processing 506/831 atomic regions from SNP 151795 to 152395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,978 DEBUG Processing 286/630 atomic regions from SNP 85604 to 86204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,198 DEBUG Processing 420/461 atomic regions from SNP 125820 to 126420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:54,321 DEBUG Processing 372/1108 atomic regions from SNP 111369 to 111969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,341 DEBUG Processing 400/996 atomic regions from SNP 119859 to 120459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,373 DEBUG Processing 495/853 atomic regions from SNP 148300 to 148900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,383 DEBUG Processing 507/831 atomic regions from SNP 152095 to 152695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,385 DEBUG Processing 287/630 atomic regions from SNP 85904 to 86504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,577 DEBUG Processing 421/461 atomic regions from SNP 126120 to 126720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:54,739 DEBUG Processing 373/1108 atomic regions from SNP 111669 to 112269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,788 DEBUG Processing 401/996 atomic regions from SNP 120159 to 120759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,806 DEBUG Processing 508/831 atomic regions from SNP 152395 to 152995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,812 DEBUG Processing 496/853 atomic regions from SNP 148600 to 149200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,815 DEBUG Processing 288/630 atomic regions from SNP 86204 to 86804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,922 DEBUG Processing 422/461 atomic regions from SNP 126420 to 127020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:55,164 DEBUG Processing 374/1108 atomic regions from SNP 111969 to 112569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,206 DEBUG Processing 509/831 atomic regions from SNP 152695 to 153295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,215 DEBUG Processing 402/996 atomic regions from SNP 120459 to 121059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,217 DEBUG Processing 289/630 atomic regions from SNP 86504 to 87104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:55,222 DEBUG Processing 497/853 atomic regions from SNP 148900 to 149500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,237 DEBUG Processing 423/461 atomic regions from SNP 126720 to 127320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:55,555 DEBUG Processing 375/1108 atomic regions from SNP 112269 to 112869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,639 DEBUG Processing 510/831 atomic regions from SNP 152995 to 153595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,662 DEBUG Processing 290/630 atomic regions from SNP 86804 to 87404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:55,663 DEBUG Processing 424/461 atomic regions from SNP 127020 to 127620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:55,685 DEBUG Processing 498/853 atomic regions from SNP 149200 to 149800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,689 DEBUG Processing 403/996 atomic regions from SNP 120759 to 121359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,929 DEBUG Processing 376/1108 atomic regions from SNP 112569 to 113169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,038 DEBUG Processing 511/831 atomic regions from SNP 153295 to 153895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,079 DEBUG Processing 291/630 atomic regions from SNP 87104 to 87704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,084 DEBUG Processing 425/461 atomic regions from SNP 127320 to 127920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:56,124 DEBUG Processing 499/853 atomic regions from SNP 149500 to 150100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,151 DEBUG Processing 404/996 atomic regions from SNP 121059 to 121659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,296 DEBUG Processing 377/1108 atomic regions from SNP 112869 to 113469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,403 DEBUG Processing 512/831 atomic regions from SNP 153595 to 154195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,467 DEBUG Processing 426/461 atomic regions from SNP 127620 to 128220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:56,470 DEBUG Processing 292/630 atomic regions from SNP 87404 to 88004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,552 DEBUG Processing 500/853 atomic regions from SNP 149800 to 150400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,594 DEBUG Processing 405/996 atomic regions from SNP 121359 to 121959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,645 DEBUG Processing 378/1108 atomic regions from SNP 113169 to 113769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,743 DEBUG Processing 513/831 atomic regions from SNP 153895 to 154495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,815 DEBUG Processing 427/461 atomic regions from SNP 127920 to 128520 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:56,820 DEBUG Processing 293/630 atomic regions from SNP 87704 to 88304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,964 DEBUG Processing 501/853 atomic regions from SNP 150100 to 150700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,010 DEBUG Processing 406/996 atomic regions from SNP 121659 to 122259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,034 DEBUG Processing 379/1108 atomic regions from SNP 113469 to 114069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,077 DEBUG Processing 514/831 atomic regions from SNP 154195 to 154795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,135 DEBUG Processing 428/461 atomic regions from SNP 128220 to 128820 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:57,167 DEBUG Processing 294/630 atomic regions from SNP 88004 to 88604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,367 DEBUG Processing 502/853 atomic regions from SNP 150400 to 151000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,403 DEBUG Processing 407/996 atomic regions from SNP 121959 to 122559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,446 DEBUG Processing 515/831 atomic regions from SNP 154495 to 155095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,454 DEBUG Processing 380/1108 atomic regions from SNP 113769 to 114369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,495 DEBUG Processing 429/461 atomic regions from SNP 128520 to 129120 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:57,524 DEBUG Processing 295/630 atomic regions from SNP 88304 to 88904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,754 DEBUG Processing 503/853 atomic regions from SNP 150700 to 151300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,807 DEBUG Processing 408/996 atomic regions from SNP 122259 to 122859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,836 DEBUG Processing 516/831 atomic regions from SNP 154795 to 155395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,873 DEBUG Processing 381/1108 atomic regions from SNP 114069 to 114669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,876 DEBUG Processing 430/461 atomic regions from SNP 128820 to 129420 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:57,906 DEBUG Processing 296/630 atomic regions from SNP 88604 to 89204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:58,148 DEBUG Processing 504/853 atomic regions from SNP 151000 to 151600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,210 DEBUG Processing 517/831 atomic regions from SNP 155095 to 155695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,214 DEBUG Processing 409/996 atomic regions from SNP 122559 to 123159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,268 DEBUG Processing 431/461 atomic regions from SNP 129120 to 129720 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:58,283 DEBUG Processing 297/630 atomic regions from SNP 88904 to 89504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:58,286 DEBUG Processing 382/1108 atomic regions from SNP 114369 to 114969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,512 DEBUG Processing 505/853 atomic regions from SNP 151300 to 151900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,584 DEBUG Processing 518/831 atomic regions from SNP 155395 to 155995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,612 DEBUG Processing 410/996 atomic regions from SNP 122859 to 123459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,644 DEBUG Processing 432/461 atomic regions from SNP 129420 to 130020 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:58,651 DEBUG Processing 298/630 atomic regions from SNP 89204 to 89804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:58,689 DEBUG Processing 383/1108 atomic regions from SNP 114669 to 115269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,836 DEBUG Processing 506/853 atomic regions from SNP 151600 to 152200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,894 DEBUG Processing 519/831 atomic regions from SNP 155695 to 156295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,993 DEBUG Processing 411/996 atomic regions from SNP 123159 to 123759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,004 DEBUG Processing 433/461 atomic regions from SNP 129720 to 130320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,039 DEBUG Processing 299/630 atomic regions from SNP 89504 to 90104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,100 DEBUG Processing 384/1108 atomic regions from SNP 114969 to 115569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,120 DEBUG Processing 507/853 atomic regions from SNP 151900 to 152500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,147 DEBUG Processing 520/831 atomic regions from SNP 155995 to 156595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,262 DEBUG Processing 434/461 atomic regions from SNP 130020 to 130620 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,263 DEBUG Processing 412/996 atomic regions from SNP 123459 to 124059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,336 DEBUG Processing 300/630 atomic regions from SNP 89804 to 90404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,483 DEBUG Processing 385/1108 atomic regions from SNP 115269 to 115869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,495 DEBUG Processing 521/831 atomic regions from SNP 156295 to 156895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,496 DEBUG Processing 508/853 atomic regions from SNP 152200 to 152800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,525 DEBUG Processing 435/461 atomic regions from SNP 130320 to 130920 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,555 DEBUG Processing 413/996 atomic regions from SNP 123759 to 124359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,573 DEBUG Processing 301/630 atomic regions from SNP 90104 to 90704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,846 DEBUG Processing 386/1108 atomic regions from SNP 115569 to 116169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,878 DEBUG Processing 522/831 atomic regions from SNP 156595 to 157195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,893 DEBUG Processing 509/853 atomic regions from SNP 152500 to 153100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,906 DEBUG Processing 436/461 atomic regions from SNP 130620 to 131220 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,921 DEBUG Processing 302/630 atomic regions from SNP 90404 to 91004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,942 DEBUG Processing 414/996 atomic regions from SNP 124059 to 124659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,176 DEBUG Processing 387/1108 atomic regions from SNP 115869 to 116469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,199 DEBUG Processing 523/831 atomic regions from SNP 156895 to 157495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,271 DEBUG Processing 510/853 atomic regions from SNP 152800 to 153400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,287 DEBUG Processing 437/461 atomic regions from SNP 130920 to 131520 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,302 DEBUG Processing 303/630 atomic regions from SNP 90704 to 91304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,345 DEBUG Processing 415/996 atomic regions from SNP 124359 to 124959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,476 DEBUG Processing 388/1108 atomic regions from SNP 116169 to 116769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,484 DEBUG Processing 524/831 atomic regions from SNP 157195 to 157795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,632 DEBUG Processing 511/853 atomic regions from SNP 153100 to 153700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,660 DEBUG Processing 438/461 atomic regions from SNP 131220 to 131820 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,678 DEBUG Processing 304/630 atomic regions from SNP 91004 to 91604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,766 DEBUG Processing 416/996 atomic regions from SNP 124659 to 125259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,799 DEBUG Processing 525/831 atomic regions from SNP 157495 to 158095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,826 DEBUG Processing 389/1108 atomic regions from SNP 116469 to 117069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,969 DEBUG Processing 512/853 atomic regions from SNP 153400 to 154000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,026 DEBUG Processing 439/461 atomic regions from SNP 131520 to 132120 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,046 DEBUG Processing 305/630 atomic regions from SNP 91304 to 91904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:01,186 DEBUG Processing 526/831 atomic regions from SNP 157795 to 158395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,194 DEBUG Processing 417/996 atomic regions from SNP 124959 to 125559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,235 DEBUG Processing 390/1108 atomic regions from SNP 116769 to 117369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,312 DEBUG Processing 513/853 atomic regions from SNP 153700 to 154300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,394 DEBUG Processing 440/461 atomic regions from SNP 131820 to 132420 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,420 DEBUG Processing 306/630 atomic regions from SNP 91604 to 92204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:01,579 DEBUG Processing 527/831 atomic regions from SNP 158095 to 158695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,631 DEBUG Processing 418/996 atomic regions from SNP 125259 to 125859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,656 DEBUG Processing 391/1108 atomic regions from SNP 117069 to 117669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,668 DEBUG Processing 514/853 atomic regions from SNP 154000 to 154600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,756 DEBUG Processing 441/461 atomic regions from SNP 132120 to 132720 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,776 DEBUG Processing 307/630 atomic regions from SNP 91904 to 92504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:01,956 DEBUG Processing 528/831 atomic regions from SNP 158395 to 158995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,052 DEBUG Processing 515/853 atomic regions from SNP 154300 to 154900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,056 DEBUG Processing 419/996 atomic regions from SNP 125559 to 126159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,088 DEBUG Processing 392/1108 atomic regions from SNP 117369 to 117969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,142 DEBUG Processing 442/461 atomic regions from SNP 132420 to 133020 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,160 DEBUG Processing 308/630 atomic regions from SNP 92204 to 92804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,339 DEBUG Processing 529/831 atomic regions from SNP 158695 to 159295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,448 DEBUG Processing 516/853 atomic regions from SNP 154600 to 155200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,482 DEBUG Processing 420/996 atomic regions from SNP 125859 to 126459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,519 DEBUG Processing 393/1108 atomic regions from SNP 117669 to 118269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,536 DEBUG Processing 443/461 atomic regions from SNP 132720 to 133320 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,554 DEBUG Processing 309/630 atomic regions from SNP 92504 to 93104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,697 DEBUG Processing 530/831 atomic regions from SNP 158995 to 159595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,831 DEBUG Processing 517/853 atomic regions from SNP 154900 to 155500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,939 DEBUG Processing 421/996 atomic regions from SNP 126159 to 126759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,941 DEBUG Processing 444/461 atomic regions from SNP 133020 to 133620 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,972 DEBUG Processing 394/1108 atomic regions from SNP 117969 to 118569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,972 DEBUG Processing 310/630 atomic regions from SNP 92804 to 93404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,069 DEBUG Processing 531/831 atomic regions from SNP 159295 to 159895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,221 DEBUG Processing 518/853 atomic regions from SNP 155200 to 155800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,352 DEBUG Processing 445/461 atomic regions from SNP 133320 to 133920 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,384 DEBUG Processing 422/996 atomic regions from SNP 126459 to 127059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,394 DEBUG Processing 311/630 atomic regions from SNP 93104 to 93704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,431 DEBUG Processing 395/1108 atomic regions from SNP 118269 to 118869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,473 DEBUG Processing 532/831 atomic regions from SNP 159595 to 160195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,622 DEBUG Processing 519/853 atomic regions from SNP 155500 to 156100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,731 DEBUG Processing 446/461 atomic regions from SNP 133620 to 134220 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,787 DEBUG Processing 312/630 atomic regions from SNP 93404 to 94004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,803 DEBUG Processing 423/996 atomic regions from SNP 126759 to 127359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,854 DEBUG Processing 533/831 atomic regions from SNP 159895 to 160495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,857 DEBUG Processing 396/1108 atomic regions from SNP 118569 to 119169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,985 DEBUG Processing 520/853 atomic regions from SNP 155800 to 156400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,112 DEBUG Processing 447/461 atomic regions from SNP 133920 to 134520 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,190 DEBUG Processing 313/630 atomic regions from SNP 93704 to 94304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,227 DEBUG Processing 424/996 atomic regions from SNP 127059 to 127659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,260 DEBUG Processing 534/831 atomic regions from SNP 160195 to 160795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,290 DEBUG Processing 397/1108 atomic regions from SNP 118869 to 119469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,363 DEBUG Processing 521/853 atomic regions from SNP 156100 to 156700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,475 DEBUG Processing 448/461 atomic regions from SNP 134220 to 134820 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,564 DEBUG Processing 314/630 atomic regions from SNP 94004 to 94604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,642 DEBUG Processing 535/831 atomic regions from SNP 160495 to 161095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,642 DEBUG Processing 425/996 atomic regions from SNP 127359 to 127959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,721 DEBUG Processing 398/1108 atomic regions from SNP 119169 to 119769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,743 DEBUG Processing 522/853 atomic regions from SNP 156400 to 157000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,853 DEBUG Processing 449/461 atomic regions from SNP 134520 to 135120 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,944 DEBUG Processing 315/630 atomic regions from SNP 94304 to 94904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,025 DEBUG Processing 536/831 atomic regions from SNP 160795 to 161395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,069 DEBUG Processing 426/996 atomic regions from SNP 127659 to 128259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,119 DEBUG Processing 523/853 atomic regions from SNP 156700 to 157300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,131 DEBUG Processing 399/1108 atomic regions from SNP 119469 to 120069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,211 DEBUG Processing 450/461 atomic regions from SNP 134820 to 135420 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,236 DEBUG Processing 316/630 atomic regions from SNP 94604 to 95204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,383 DEBUG Processing 537/831 atomic regions from SNP 161095 to 161695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,482 DEBUG Processing 427/996 atomic regions from SNP 127959 to 128559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,545 DEBUG Processing 524/853 atomic regions from SNP 157000 to 157600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,573 DEBUG Processing 400/1108 atomic regions from SNP 119769 to 120369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,616 DEBUG Processing 451/461 atomic regions from SNP 135120 to 135720 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,631 DEBUG Processing 317/630 atomic regions from SNP 94904 to 95504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,658 DEBUG Processing 538/831 atomic regions from SNP 161395 to 161995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,849 DEBUG Processing 428/996 atomic regions from SNP 128259 to 128859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,938 DEBUG Processing 525/853 atomic regions from SNP 157300 to 157900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,966 DEBUG Processing 401/1108 atomic regions from SNP 120069 to 120669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,007 DEBUG Processing 452/461 atomic regions from SNP 135420 to 136020 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,018 DEBUG Processing 318/630 atomic regions from SNP 95204 to 95804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,022 DEBUG Processing 539/831 atomic regions from SNP 161695 to 162295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,220 DEBUG Processing 429/996 atomic regions from SNP 128559 to 129159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,262 DEBUG Processing 526/853 atomic regions from SNP 157600 to 158200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,349 DEBUG Processing 402/1108 atomic regions from SNP 120369 to 120969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,394 DEBUG Processing 453/461 atomic regions from SNP 135720 to 136320 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,412 DEBUG Processing 319/630 atomic regions from SNP 95504 to 96104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,419 DEBUG Processing 540/831 atomic regions from SNP 161995 to 162595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,590 DEBUG Processing 430/996 atomic regions from SNP 128859 to 129459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,626 DEBUG Processing 527/853 atomic regions from SNP 157900 to 158500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,736 DEBUG Processing 403/1108 atomic regions from SNP 120669 to 121269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,761 DEBUG Processing 454/461 atomic regions from SNP 136020 to 136620 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,787 DEBUG Processing 320/630 atomic regions from SNP 95804 to 96404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,819 DEBUG Processing 541/831 atomic regions from SNP 162295 to 162895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,989 DEBUG Processing 431/996 atomic regions from SNP 129159 to 129759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,001 DEBUG Processing 528/853 atomic regions from SNP 158200 to 158800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,141 DEBUG Processing 404/1108 atomic regions from SNP 120969 to 121569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,147 DEBUG Processing 455/461 atomic regions from SNP 136320 to 136920 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,188 DEBUG Processing 321/630 atomic regions from SNP 96104 to 96704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,202 DEBUG Processing 542/831 atomic regions from SNP 162595 to 163195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,389 DEBUG Processing 432/996 atomic regions from SNP 129459 to 130059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,392 DEBUG Processing 529/853 atomic regions from SNP 158500 to 159100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,500 DEBUG Processing 456/461 atomic regions from SNP 136620 to 137220 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,531 DEBUG Processing 405/1108 atomic regions from SNP 121269 to 121869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,586 DEBUG Processing 322/630 atomic regions from SNP 96404 to 97004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,594 DEBUG Processing 543/831 atomic regions from SNP 162895 to 163495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,789 DEBUG Processing 530/853 atomic regions from SNP 158800 to 159400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,792 DEBUG Processing 433/996 atomic regions from SNP 129759 to 130359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,844 DEBUG Processing 457/461 atomic regions from SNP 136920 to 137520 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,948 DEBUG Processing 406/1108 atomic regions from SNP 121569 to 122169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,974 DEBUG Processing 544/831 atomic regions from SNP 163195 to 163795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,976 DEBUG Processing 323/630 atomic regions from SNP 96704 to 97304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:08,185 DEBUG Processing 531/853 atomic regions from SNP 159100 to 159700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,215 DEBUG Processing 434/996 atomic regions from SNP 130059 to 130659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,221 DEBUG Processing 458/461 atomic regions from SNP 137220 to 137820 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,350 DEBUG Processing 324/630 atomic regions from SNP 97004 to 97604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:08,359 DEBUG Processing 545/831 atomic regions from SNP 163495 to 164095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,402 DEBUG Processing 407/1108 atomic regions from SNP 121869 to 122469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,562 DEBUG Processing 532/853 atomic regions from SNP 159400 to 160000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,613 DEBUG Processing 459/461 atomic regions from SNP 137520 to 138120 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,645 DEBUG Processing 435/996 atomic regions from SNP 130359 to 130959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,720 DEBUG Processing 325/630 atomic regions from SNP 97304 to 97904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:08,726 DEBUG Processing 546/831 atomic regions from SNP 163795 to 164395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,844 DEBUG Processing 408/1108 atomic regions from SNP 122169 to 122769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,947 DEBUG Processing 533/853 atomic regions from SNP 159700 to 160300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,007 DEBUG Processing 460/461 atomic regions from SNP 137820 to 138420 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,074 DEBUG Processing 436/996 atomic regions from SNP 130659 to 131259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,098 DEBUG Processing 547/831 atomic regions from SNP 164095 to 164695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,104 DEBUG Processing 326/630 atomic regions from SNP 97604 to 98204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,285 DEBUG Processing 409/1108 atomic regions from SNP 122469 to 123069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,327 DEBUG Processing 534/853 atomic regions from SNP 160000 to 160600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,368 DEBUG Processing 461/461 atomic regions from SNP 138120 to 138720 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,472 DEBUG Processing 437/996 atomic regions from SNP 130959 to 131559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,482 DEBUG Processing 548/831 atomic regions from SNP 164395 to 164995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,498 DEBUG Processing 327/630 atomic regions from SNP 97904 to 98504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,548 DEBUG Unique SNPs positions in subchromosome 4: 138721 2025-01-31 09:43:09,653 DEBUG Processing 535/853 atomic regions from SNP 160300 to 160900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,663 DEBUG Processing 410/1108 atomic regions from SNP 122769 to 123369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,762 DEBUG Processing 549/831 atomic regions from SNP 164695 to 165295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,788 DEBUG Processing 438/996 atomic regions from SNP 131259 to 131859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,803 DEBUG Processing 328/630 atomic regions from SNP 98204 to 98804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,809 DEBUG Subchromosome time: 132.2051370665431, subchromosome SNPs: 138721 2025-01-31 09:43:09,827 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:09,987 DEBUG Processing 536/853 atomic regions from SNP 160600 to 161200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,041 DEBUG Processing 411/1108 atomic regions from SNP 123069 to 123669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,054 DEBUG Processing 550/831 atomic regions from SNP 164995 to 165595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,104 DEBUG Processing 329/630 atomic regions from SNP 98504 to 99104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,115 DEBUG Processing 439/996 atomic regions from SNP 131559 to 132159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,366 DEBUG Processing 537/853 atomic regions from SNP 160900 to 161500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,420 DEBUG Processing 551/831 atomic regions from SNP 165295 to 165895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,457 DEBUG Processing 330/630 atomic regions from SNP 98804 to 99404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,466 DEBUG Processing 412/1108 atomic regions from SNP 123369 to 123969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,487 DEBUG Processing 440/996 atomic regions from SNP 131859 to 132459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,730 DEBUG Processing 538/853 atomic regions from SNP 161200 to 161800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,776 DEBUG Processing 552/831 atomic regions from SNP 165595 to 166195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,819 DEBUG Processing 331/630 atomic regions from SNP 99104 to 99704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,859 DEBUG Processing 441/996 atomic regions from SNP 132159 to 132759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,875 DEBUG Processing 413/1108 atomic regions from SNP 123669 to 124269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,973 DEBUG Processing 539/853 atomic regions from SNP 161500 to 162100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,015 DEBUG Processing 553/831 atomic regions from SNP 165895 to 166495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,058 DEBUG Processing 332/630 atomic regions from SNP 99404 to 100004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,135 DEBUG Processing 442/996 atomic regions from SNP 132459 to 133059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,176 DEBUG Processing 414/1108 atomic regions from SNP 123969 to 124569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,232 DEBUG Processing 540/853 atomic regions from SNP 161800 to 162400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,249 DEBUG Processing 554/831 atomic regions from SNP 166195 to 166795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,293 DEBUG Processing 333/630 atomic regions from SNP 99704 to 100304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,415 DEBUG Processing 443/996 atomic regions from SNP 132759 to 133359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,472 DEBUG Processing 415/1108 atomic regions from SNP 124269 to 124869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,497 DEBUG Processing 555/831 atomic regions from SNP 166495 to 167095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,501 DEBUG Processing 541/853 atomic regions from SNP 162100 to 162700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,525 DEBUG Processing 334/630 atomic regions from SNP 100004 to 100604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,674 DEBUG Processing 444/996 atomic regions from SNP 133059 to 133659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,749 DEBUG Processing 416/1108 atomic regions from SNP 124569 to 125169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,763 DEBUG Processing 556/831 atomic regions from SNP 166795 to 167395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,779 DEBUG Processing 542/853 atomic regions from SNP 162400 to 163000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,785 DEBUG Processing 335/630 atomic regions from SNP 100304 to 100904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,927 DEBUG Processing 445/996 atomic regions from SNP 133359 to 133959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,007 DEBUG Processing 557/831 atomic regions from SNP 167095 to 167695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,024 DEBUG Processing 417/1108 atomic regions from SNP 124869 to 125469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,048 DEBUG Processing 336/630 atomic regions from SNP 100604 to 101204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,051 DEBUG Processing 543/853 atomic regions from SNP 162700 to 163300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,192 DEBUG Processing 446/996 atomic regions from SNP 133659 to 134259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,231 DEBUG Processing 558/831 atomic regions from SNP 167395 to 167995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,290 DEBUG Processing 418/1108 atomic regions from SNP 125169 to 125769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,301 DEBUG Processing 337/630 atomic regions from SNP 100904 to 101504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,316 DEBUG Processing 544/853 atomic regions from SNP 163000 to 163600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,459 DEBUG Processing 559/831 atomic regions from SNP 167695 to 168295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,476 DEBUG Processing 447/996 atomic regions from SNP 133959 to 134559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,526 DEBUG Processing 338/630 atomic regions from SNP 101204 to 101804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,551 DEBUG Processing 419/1108 atomic regions from SNP 125469 to 126069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,559 DEBUG Processing 545/853 atomic regions from SNP 163300 to 163900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,754 DEBUG Processing 560/831 atomic regions from SNP 167995 to 168595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,804 DEBUG Processing 448/996 atomic regions from SNP 134259 to 134859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,817 DEBUG Processing 339/630 atomic regions from SNP 101504 to 102104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,852 DEBUG Processing 546/853 atomic regions from SNP 163600 to 164200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,877 DEBUG Processing 420/1108 atomic regions from SNP 125769 to 126369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,045 DEBUG Processing 561/831 atomic regions from SNP 168295 to 168895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,151 DEBUG Processing 340/630 atomic regions from SNP 101804 to 102404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:13,156 DEBUG Processing 449/996 atomic regions from SNP 134559 to 135159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,175 DEBUG Processing 547/853 atomic regions from SNP 163900 to 164500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,220 DEBUG Processing 421/1108 atomic regions from SNP 126069 to 126669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,329 DEBUG Processing 562/831 atomic regions from SNP 168595 to 169195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,474 DEBUG Processing 341/630 atomic regions from SNP 102104 to 102704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:13,506 DEBUG Processing 548/853 atomic regions from SNP 164200 to 164800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,512 DEBUG Processing 450/996 atomic regions from SNP 134859 to 135459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,571 DEBUG Processing 422/1108 atomic regions from SNP 126369 to 126969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,616 DEBUG Processing 563/831 atomic regions from SNP 168895 to 169495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,814 DEBUG Processing 342/630 atomic regions from SNP 102404 to 103004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:13,857 DEBUG Processing 549/853 atomic regions from SNP 164500 to 165100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,907 DEBUG Processing 451/996 atomic regions from SNP 135159 to 135759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,964 DEBUG Processing 564/831 atomic regions from SNP 169195 to 169795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,981 DEBUG Processing 423/1108 atomic regions from SNP 126669 to 127269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,162 DEBUG Processing 343/630 atomic regions from SNP 102704 to 103304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,234 DEBUG Processing 550/853 atomic regions from SNP 164800 to 165400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,298 DEBUG Processing 452/996 atomic regions from SNP 135459 to 136059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,329 DEBUG Processing 565/831 atomic regions from SNP 169495 to 170095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,368 DEBUG Processing 424/1108 atomic regions from SNP 126969 to 127569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,491 DEBUG Processing 344/630 atomic regions from SNP 103004 to 103604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,623 DEBUG Processing 551/853 atomic regions from SNP 165100 to 165700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,696 DEBUG Processing 453/996 atomic regions from SNP 135759 to 136359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,700 DEBUG Processing 566/831 atomic regions from SNP 169795 to 170395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,777 DEBUG Processing 425/1108 atomic regions from SNP 127269 to 127869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,822 DEBUG Processing 345/630 atomic regions from SNP 103304 to 103904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,967 DEBUG Processing 552/853 atomic regions from SNP 165400 to 166000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,062 DEBUG Processing 567/831 atomic regions from SNP 170095 to 170695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,072 DEBUG Processing 454/996 atomic regions from SNP 136059 to 136659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,133 DEBUG Processing 426/1108 atomic regions from SNP 127569 to 128169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,140 DEBUG Processing 346/630 atomic regions from SNP 103604 to 104204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,298 DEBUG Processing 553/853 atomic regions from SNP 165700 to 166300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,394 DEBUG Processing 568/831 atomic regions from SNP 170395 to 170995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,426 DEBUG Processing 455/996 atomic regions from SNP 136359 to 136959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,468 DEBUG Processing 347/630 atomic regions from SNP 103904 to 104504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,496 DEBUG Processing 427/1108 atomic regions from SNP 127869 to 128469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,552 DEBUG Processing 554/853 atomic regions from SNP 166000 to 166600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,701 DEBUG Processing 569/831 atomic regions from SNP 170695 to 171295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,777 DEBUG Processing 456/996 atomic regions from SNP 136659 to 137259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,805 DEBUG Processing 348/630 atomic regions from SNP 104204 to 104804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,848 DEBUG Processing 428/1108 atomic regions from SNP 128169 to 128769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,857 DEBUG Processing 555/853 atomic regions from SNP 166300 to 166900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,999 DEBUG Processing 570/831 atomic regions from SNP 170995 to 171595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,100 DEBUG Processing 457/996 atomic regions from SNP 136959 to 137559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,126 DEBUG Processing 349/630 atomic regions from SNP 104504 to 105104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,157 DEBUG Processing 556/853 atomic regions from SNP 166600 to 167200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,169 DEBUG Processing 429/1108 atomic regions from SNP 128469 to 129069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,225 DEBUG Processing 571/831 atomic regions from SNP 171295 to 171895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,388 DEBUG Processing 458/996 atomic regions from SNP 137259 to 137859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,428 DEBUG Processing 350/630 atomic regions from SNP 104804 to 105404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,461 DEBUG Processing 557/853 atomic regions from SNP 166900 to 167500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,488 DEBUG Processing 430/1108 atomic regions from SNP 128769 to 129369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,503 DEBUG Processing 572/831 atomic regions from SNP 171595 to 172195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,676 DEBUG Processing 459/996 atomic regions from SNP 137559 to 138159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,715 DEBUG Processing 351/630 atomic regions from SNP 105104 to 105704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,809 DEBUG Processing 558/853 atomic regions from SNP 167200 to 167800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,833 DEBUG Processing 573/831 atomic regions from SNP 171895 to 172495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,846 DEBUG Processing 431/1108 atomic regions from SNP 129069 to 129669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,992 DEBUG Processing 460/996 atomic regions from SNP 137859 to 138459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,019 DEBUG Processing 352/630 atomic regions from SNP 105404 to 106004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:17,116 DEBUG Processing 559/853 atomic regions from SNP 167500 to 168100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,169 DEBUG Processing 574/831 atomic regions from SNP 172195 to 172795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,236 DEBUG Processing 432/1108 atomic regions from SNP 129369 to 129969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,368 DEBUG Processing 353/630 atomic regions from SNP 105704 to 106304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:17,379 DEBUG Processing 461/996 atomic regions from SNP 138159 to 138759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,441 DEBUG Processing 560/853 atomic regions from SNP 167800 to 168400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,496 DEBUG Processing 575/831 atomic regions from SNP 172495 to 173095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,638 DEBUG Processing 433/1108 atomic regions from SNP 129669 to 130269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,788 DEBUG Processing 354/630 atomic regions from SNP 106004 to 106604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:17,817 DEBUG Processing 561/853 atomic regions from SNP 168100 to 168700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,817 DEBUG Processing 462/996 atomic regions from SNP 138459 to 139059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,843 DEBUG Processing 576/831 atomic regions from SNP 172795 to 173395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,011 DEBUG Processing 434/1108 atomic regions from SNP 129969 to 130569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,169 DEBUG Processing 355/630 atomic regions from SNP 106304 to 106904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,187 DEBUG Processing 562/853 atomic regions from SNP 168400 to 169000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,204 DEBUG Processing 577/831 atomic regions from SNP 173095 to 173695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,220 DEBUG Processing 463/996 atomic regions from SNP 138759 to 139359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,248 DEBUG Segmenting atomic regions: 2025-01-31 09:43:18,357 DEBUG Processing 1/229 atomic regions from SNP 0 to 602 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:18,387 DEBUG Processing 435/1108 atomic regions from SNP 130269 to 130869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,577 DEBUG Processing 356/630 atomic regions from SNP 106604 to 107204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,580 DEBUG Processing 563/853 atomic regions from SNP 168700 to 169300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,594 DEBUG Processing 578/831 atomic regions from SNP 173395 to 173995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,640 DEBUG Processing 464/996 atomic regions from SNP 139059 to 139659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,695 DEBUG Processing 2/229 atomic regions from SNP 302 to 904 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:18,803 DEBUG Processing 436/1108 atomic regions from SNP 130569 to 131169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,983 DEBUG Processing 564/853 atomic regions from SNP 169000 to 169600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,990 DEBUG Processing 357/630 atomic regions from SNP 106904 to 107504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,009 DEBUG Processing 579/831 atomic regions from SNP 173695 to 174295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,065 DEBUG Processing 465/996 atomic regions from SNP 139359 to 139959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,084 DEBUG Processing 3/229 atomic regions from SNP 604 to 1206 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:19,212 DEBUG Processing 437/1108 atomic regions from SNP 130869 to 131469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,338 DEBUG Processing 565/853 atomic regions from SNP 169300 to 169900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,347 DEBUG Processing 358/630 atomic regions from SNP 107204 to 107804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,382 DEBUG Processing 580/831 atomic regions from SNP 173995 to 174595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,452 DEBUG Processing 4/229 atomic regions from SNP 906 to 1508 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:19,471 DEBUG Processing 466/996 atomic regions from SNP 139659 to 140259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,630 DEBUG Processing 438/1108 atomic regions from SNP 131169 to 131769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,663 DEBUG Processing 359/630 atomic regions from SNP 107504 to 108104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,680 DEBUG Processing 566/853 atomic regions from SNP 169600 to 170200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,705 DEBUG Processing 581/831 atomic regions from SNP 174295 to 174895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,735 DEBUG Processing 5/229 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:19,811 DEBUG Processing 467/996 atomic regions from SNP 139959 to 140559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,980 DEBUG Processing 439/1108 atomic regions from SNP 131469 to 132069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,982 DEBUG Processing 360/630 atomic regions from SNP 107804 to 108404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,005 DEBUG Processing 567/853 atomic regions from SNP 169900 to 170500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,014 DEBUG Processing 582/831 atomic regions from SNP 174595 to 175195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,057 DEBUG Processing 6/229 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:20,187 DEBUG Processing 468/996 atomic regions from SNP 140259 to 140859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,351 DEBUG Processing 361/630 atomic regions from SNP 108104 to 108704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,355 DEBUG Processing 568/853 atomic regions from SNP 170200 to 170800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,380 DEBUG Processing 583/831 atomic regions from SNP 174895 to 175495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,382 DEBUG Processing 440/1108 atomic regions from SNP 131769 to 132369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,404 DEBUG Processing 7/229 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:20,587 DEBUG Processing 469/996 atomic regions from SNP 140559 to 141159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,749 DEBUG Processing 362/630 atomic regions from SNP 108404 to 109004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,765 DEBUG Processing 569/853 atomic regions from SNP 170500 to 171100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,769 DEBUG Processing 584/831 atomic regions from SNP 175195 to 175795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,796 DEBUG Processing 8/229 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:20,800 DEBUG Processing 441/1108 atomic regions from SNP 132069 to 132669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,028 DEBUG Processing 470/996 atomic regions from SNP 140859 to 141459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,198 DEBUG Processing 363/630 atomic regions from SNP 108704 to 109304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,205 DEBUG Processing 585/831 atomic regions from SNP 175495 to 176095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,216 DEBUG Processing 9/229 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:21,240 DEBUG Processing 570/853 atomic regions from SNP 170800 to 171400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,252 DEBUG Processing 442/1108 atomic regions from SNP 132369 to 132969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,428 DEBUG Processing 471/996 atomic regions from SNP 141159 to 141759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,591 DEBUG Processing 364/630 atomic regions from SNP 109004 to 109604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,600 DEBUG Processing 586/831 atomic regions from SNP 175795 to 176395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,629 DEBUG Processing 10/229 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:21,661 DEBUG Processing 571/853 atomic regions from SNP 171100 to 171700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,674 DEBUG Processing 443/1108 atomic regions from SNP 132669 to 133269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,868 DEBUG Processing 472/996 atomic regions from SNP 141459 to 142059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,960 DEBUG Processing 365/630 atomic regions from SNP 109304 to 109904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,962 DEBUG Processing 587/831 atomic regions from SNP 176095 to 176695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,017 DEBUG Processing 11/229 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:22,083 DEBUG Processing 572/853 atomic regions from SNP 171400 to 172000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,109 DEBUG Processing 444/1108 atomic regions from SNP 132969 to 133569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,340 DEBUG Processing 473/996 atomic regions from SNP 141759 to 142359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,368 DEBUG Processing 588/831 atomic regions from SNP 176395 to 176995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,379 DEBUG Processing 366/630 atomic regions from SNP 109604 to 110204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,420 DEBUG Processing 12/229 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:22,508 DEBUG Processing 573/853 atomic regions from SNP 171700 to 172300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,553 DEBUG Processing 445/1108 atomic regions from SNP 133269 to 133869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,782 DEBUG Processing 589/831 atomic regions from SNP 176695 to 177295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,787 DEBUG Processing 367/630 atomic regions from SNP 109904 to 110504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,790 DEBUG Processing 474/996 atomic regions from SNP 142059 to 142659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,817 DEBUG Processing 13/229 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:22,898 DEBUG Processing 574/853 atomic regions from SNP 172000 to 172600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,957 DEBUG Processing 446/1108 atomic regions from SNP 133569 to 134169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,180 DEBUG Processing 590/831 atomic regions from SNP 176995 to 177595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,201 DEBUG Processing 368/630 atomic regions from SNP 110204 to 110804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,225 DEBUG Processing 475/996 atomic regions from SNP 142359 to 142959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,232 DEBUG Processing 14/229 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:23,337 DEBUG Processing 575/853 atomic regions from SNP 172300 to 172900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,404 DEBUG Processing 447/1108 atomic regions from SNP 133869 to 134469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,632 DEBUG Processing 591/831 atomic regions from SNP 177295 to 177895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,648 DEBUG Processing 369/630 atomic regions from SNP 110504 to 111104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,678 DEBUG Processing 15/229 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:23,700 DEBUG Processing 476/996 atomic regions from SNP 142659 to 143259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,766 DEBUG Processing 576/853 atomic regions from SNP 172600 to 173200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,842 DEBUG Processing 448/1108 atomic regions from SNP 134169 to 134769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,081 DEBUG Processing 592/831 atomic regions from SNP 177595 to 178195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,105 DEBUG Processing 370/630 atomic regions from SNP 110804 to 111404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,131 DEBUG Processing 16/229 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:24,179 DEBUG Processing 577/853 atomic regions from SNP 172900 to 173500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,188 DEBUG Processing 477/996 atomic regions from SNP 142959 to 143559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,234 DEBUG Processing 449/1108 atomic regions from SNP 134469 to 135069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,462 DEBUG Processing 593/831 atomic regions from SNP 177895 to 178495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,523 DEBUG Processing 371/630 atomic regions from SNP 111104 to 111704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,527 DEBUG Processing 17/229 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:24,593 DEBUG Processing 578/853 atomic regions from SNP 173200 to 173800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,622 DEBUG Processing 478/996 atomic regions from SNP 143259 to 143859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,654 DEBUG Processing 450/1108 atomic regions from SNP 134769 to 135369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,714 DEBUG Processing 594/831 atomic regions from SNP 178195 to 178795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,850 DEBUG Processing 372/630 atomic regions from SNP 111404 to 112004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,875 DEBUG Processing 18/229 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:25,023 DEBUG Processing 579/853 atomic regions from SNP 173500 to 174100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,107 DEBUG Processing 479/996 atomic regions from SNP 143559 to 144159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,109 DEBUG Processing 595/831 atomic regions from SNP 178495 to 179095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,143 DEBUG Processing 451/1108 atomic regions from SNP 135069 to 135669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,188 DEBUG Processing 373/630 atomic regions from SNP 111704 to 112304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,188 DEBUG Processing 19/229 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:25,421 DEBUG Processing 580/853 atomic regions from SNP 173800 to 174400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,590 DEBUG Processing 596/831 atomic regions from SNP 178795 to 179395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,613 DEBUG Processing 480/996 atomic regions from SNP 143859 to 144459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,617 DEBUG Processing 20/229 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:25,623 DEBUG Processing 374/630 atomic regions from SNP 112004 to 112604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,636 DEBUG Processing 452/1108 atomic regions from SNP 135369 to 135969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,808 DEBUG Processing 581/853 atomic regions from SNP 174100 to 174700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,038 DEBUG Processing 597/831 atomic regions from SNP 179095 to 179695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,089 DEBUG Processing 21/229 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:26,092 DEBUG Processing 481/996 atomic regions from SNP 144159 to 144759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,093 DEBUG Processing 375/630 atomic regions from SNP 112304 to 112904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,127 DEBUG Processing 453/1108 atomic regions from SNP 135669 to 136269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,204 DEBUG Processing 582/853 atomic regions from SNP 174400 to 175000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,445 DEBUG Processing 598/831 atomic regions from SNP 179395 to 179995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,492 DEBUG Processing 22/229 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:26,506 DEBUG Processing 376/630 atomic regions from SNP 112604 to 113204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,534 DEBUG Processing 482/996 atomic regions from SNP 144459 to 145059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,562 DEBUG Processing 454/1108 atomic regions from SNP 135969 to 136569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,583 DEBUG Processing 583/853 atomic regions from SNP 174700 to 175300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,876 DEBUG Processing 599/831 atomic regions from SNP 179695 to 180295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,946 DEBUG Processing 23/229 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:26,958 DEBUG Processing 377/630 atomic regions from SNP 112904 to 113504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,008 DEBUG Processing 483/996 atomic regions from SNP 144759 to 145359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,014 DEBUG Processing 584/853 atomic regions from SNP 175000 to 175600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,038 DEBUG Processing 455/1108 atomic regions from SNP 136269 to 136869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,300 DEBUG Processing 600/831 atomic regions from SNP 179995 to 180595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,383 DEBUG Processing 378/630 atomic regions from SNP 113204 to 113804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,390 DEBUG Processing 24/229 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:27,446 DEBUG Processing 585/853 atomic regions from SNP 175300 to 175900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,473 DEBUG Processing 484/996 atomic regions from SNP 145059 to 145659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,508 DEBUG Processing 456/1108 atomic regions from SNP 136569 to 137169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,707 DEBUG Processing 601/831 atomic regions from SNP 180295 to 180895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,791 DEBUG Processing 379/630 atomic regions from SNP 113504 to 114104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,826 DEBUG Processing 25/229 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:27,874 DEBUG Processing 586/853 atomic regions from SNP 175600 to 176200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,937 DEBUG Processing 485/996 atomic regions from SNP 145359 to 145959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,955 DEBUG Processing 457/1108 atomic regions from SNP 136869 to 137469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,065 DEBUG Processing 602/831 atomic regions from SNP 180595 to 181195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,098 DEBUG Processing 380/630 atomic regions from SNP 113804 to 114404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,163 DEBUG Processing 26/229 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:28,266 DEBUG Processing 587/853 atomic regions from SNP 175900 to 176500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,358 DEBUG Processing 486/996 atomic regions from SNP 145659 to 146259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,402 DEBUG Processing 458/1108 atomic regions from SNP 137169 to 137769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,462 DEBUG Processing 603/831 atomic regions from SNP 180895 to 181495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,463 DEBUG Processing 27/229 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:28,464 DEBUG Processing 381/630 atomic regions from SNP 114104 to 114704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,583 DEBUG Processing 588/853 atomic regions from SNP 176200 to 176800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,756 DEBUG Processing 487/996 atomic regions from SNP 145959 to 146559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,849 DEBUG Processing 459/1108 atomic regions from SNP 137469 to 138069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,907 DEBUG Processing 28/229 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:28,909 DEBUG Processing 382/630 atomic regions from SNP 114404 to 115004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,912 DEBUG Processing 604/831 atomic regions from SNP 181195 to 181795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,976 DEBUG Processing 589/853 atomic regions from SNP 176500 to 177100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,069 DEBUG Processing 488/996 atomic regions from SNP 146259 to 146859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,205 DEBUG Processing 460/1108 atomic regions from SNP 137769 to 138369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,325 DEBUG Processing 605/831 atomic regions from SNP 181495 to 182095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,325 DEBUG Processing 383/630 atomic regions from SNP 114704 to 115304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,327 DEBUG Processing 29/229 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:29,408 DEBUG Processing 590/853 atomic regions from SNP 176800 to 177400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,490 DEBUG Processing 489/996 atomic regions from SNP 146559 to 147159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,581 DEBUG Processing 461/1108 atomic regions from SNP 138069 to 138669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,681 DEBUG Processing 30/229 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:29,694 DEBUG Processing 384/630 atomic regions from SNP 115004 to 115604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,694 DEBUG Processing 606/831 atomic regions from SNP 181795 to 182395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,767 DEBUG Processing 591/853 atomic regions from SNP 177100 to 177700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,938 DEBUG Processing 490/996 atomic regions from SNP 146859 to 147459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,999 DEBUG Processing 462/1108 atomic regions from SNP 138369 to 138969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,044 DEBUG Processing 31/229 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:30,062 DEBUG Processing 385/630 atomic regions from SNP 115304 to 115904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,067 DEBUG Processing 607/831 atomic regions from SNP 182095 to 182695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,086 DEBUG Processing 592/853 atomic regions from SNP 177400 to 178000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,391 DEBUG Processing 491/996 atomic regions from SNP 147159 to 147759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,446 DEBUG Processing 32/229 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:30,455 DEBUG Processing 463/1108 atomic regions from SNP 138669 to 139269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,472 DEBUG Processing 386/630 atomic regions from SNP 115604 to 116204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,476 DEBUG Processing 593/853 atomic regions from SNP 177700 to 178300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,478 DEBUG Processing 608/831 atomic regions from SNP 182395 to 182995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,870 DEBUG Processing 492/996 atomic regions from SNP 147459 to 148059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,906 DEBUG Processing 33/229 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:30,923 DEBUG Processing 594/853 atomic regions from SNP 178000 to 178600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,929 DEBUG Processing 387/630 atomic regions from SNP 115904 to 116504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,940 DEBUG Processing 609/831 atomic regions from SNP 182695 to 183295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,944 DEBUG Processing 464/1108 atomic regions from SNP 138969 to 139569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,360 DEBUG Processing 493/996 atomic regions from SNP 147759 to 148359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,379 DEBUG Processing 34/229 atomic regions from SNP 9966 to 10568 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:31,391 DEBUG Processing 595/853 atomic regions from SNP 178300 to 178900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,399 DEBUG Processing 388/630 atomic regions from SNP 116204 to 116804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,430 DEBUG Processing 610/831 atomic regions from SNP 182995 to 183595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,448 DEBUG Processing 465/1108 atomic regions from SNP 139269 to 139869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,816 DEBUG Processing 494/996 atomic regions from SNP 148059 to 148659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,818 DEBUG Processing 35/229 atomic regions from SNP 10268 to 10870 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:31,837 DEBUG Processing 596/853 atomic regions from SNP 178600 to 179200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,850 DEBUG Processing 389/630 atomic regions from SNP 116504 to 117104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,891 DEBUG Processing 611/831 atomic regions from SNP 183295 to 183895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,927 DEBUG Processing 466/1108 atomic regions from SNP 139569 to 140169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,265 DEBUG Processing 36/229 atomic regions from SNP 10570 to 11172 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:32,267 DEBUG Processing 495/996 atomic regions from SNP 148359 to 148959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,283 DEBUG Processing 597/853 atomic regions from SNP 178900 to 179500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,293 DEBUG Processing 390/630 atomic regions from SNP 116804 to 117404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,353 DEBUG Processing 612/831 atomic regions from SNP 183595 to 184195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,419 DEBUG Processing 467/1108 atomic regions from SNP 139869 to 140469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,681 DEBUG Processing 37/229 atomic regions from SNP 10872 to 11474 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:32,685 DEBUG Processing 496/996 atomic regions from SNP 148659 to 149259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,690 DEBUG Processing 598/853 atomic regions from SNP 179200 to 179800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,705 DEBUG Processing 391/630 atomic regions from SNP 117104 to 117704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,767 DEBUG Processing 613/831 atomic regions from SNP 183895 to 184495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,849 DEBUG Processing 468/1108 atomic regions from SNP 140169 to 140769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,009 DEBUG Processing 599/853 atomic regions from SNP 179500 to 180100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,040 DEBUG Processing 38/229 atomic regions from SNP 11174 to 11776 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:33,043 DEBUG Processing 497/996 atomic regions from SNP 148959 to 149559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,054 DEBUG Processing 392/630 atomic regions from SNP 117404 to 118004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,101 DEBUG Processing 614/831 atomic regions from SNP 184195 to 184795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,245 DEBUG Processing 469/1108 atomic regions from SNP 140469 to 141069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,281 DEBUG Processing 600/853 atomic regions from SNP 179800 to 180400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,310 DEBUG Processing 39/229 atomic regions from SNP 11476 to 12078 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:33,344 DEBUG Processing 498/996 atomic regions from SNP 149259 to 149859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,347 DEBUG Processing 393/630 atomic regions from SNP 117704 to 118304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,372 DEBUG Processing 615/831 atomic regions from SNP 184495 to 185095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,634 DEBUG Processing 601/853 atomic regions from SNP 180100 to 180700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,643 DEBUG Processing 470/1108 atomic regions from SNP 140769 to 141369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,693 DEBUG Processing 40/229 atomic regions from SNP 11778 to 12380 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:33,736 DEBUG Processing 616/831 atomic regions from SNP 184795 to 185395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,738 DEBUG Processing 394/630 atomic regions from SNP 118004 to 118604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,748 DEBUG Processing 499/996 atomic regions from SNP 149559 to 150159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,984 DEBUG Processing 602/853 atomic regions from SNP 180400 to 181000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,027 DEBUG Processing 471/1108 atomic regions from SNP 141069 to 141669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,100 DEBUG Processing 41/229 atomic regions from SNP 12080 to 12682 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:34,144 DEBUG Processing 617/831 atomic regions from SNP 185095 to 185695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,169 DEBUG Processing 395/630 atomic regions from SNP 118304 to 118904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,197 DEBUG Processing 500/996 atomic regions from SNP 149859 to 150459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,294 DEBUG Processing 603/853 atomic regions from SNP 180700 to 181300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,368 DEBUG Processing 472/1108 atomic regions from SNP 141369 to 141969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,467 DEBUG Processing 42/229 atomic regions from SNP 12382 to 12984 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:34,559 DEBUG Processing 618/831 atomic regions from SNP 185395 to 185995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,587 DEBUG Processing 396/630 atomic regions from SNP 118604 to 119204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,665 DEBUG Processing 501/996 atomic regions from SNP 150159 to 150759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,736 DEBUG Processing 604/853 atomic regions from SNP 181000 to 181600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,774 DEBUG Processing 473/1108 atomic regions from SNP 141669 to 142269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,778 DEBUG Processing 43/229 atomic regions from SNP 12684 to 13286 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:34,877 DEBUG Processing 619/831 atomic regions from SNP 185695 to 186295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,940 DEBUG Processing 397/630 atomic regions from SNP 118904 to 119504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,087 DEBUG Processing 502/996 atomic regions from SNP 150459 to 151059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,165 DEBUG Processing 605/853 atomic regions from SNP 181300 to 181900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,177 DEBUG Processing 44/229 atomic regions from SNP 12986 to 13588 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:35,195 DEBUG Processing 620/831 atomic regions from SNP 185995 to 186595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,225 DEBUG Processing 398/630 atomic regions from SNP 119204 to 119804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,226 DEBUG Processing 474/1108 atomic regions from SNP 141969 to 142569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,355 DEBUG Processing 503/996 atomic regions from SNP 150759 to 151359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,551 DEBUG Processing 606/853 atomic regions from SNP 181600 to 182200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,586 DEBUG Processing 45/229 atomic regions from SNP 13288 to 13890 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:35,602 DEBUG Processing 621/831 atomic regions from SNP 186295 to 186895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,645 DEBUG Processing 399/630 atomic regions from SNP 119504 to 120104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,684 DEBUG Processing 475/1108 atomic regions from SNP 142269 to 142869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,700 DEBUG Processing 504/996 atomic regions from SNP 151059 to 151659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,821 DEBUG Processing 607/853 atomic regions from SNP 181900 to 182500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,006 DEBUG Processing 46/229 atomic regions from SNP 13590 to 14192 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:36,018 DEBUG Processing 622/831 atomic regions from SNP 186595 to 187195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,108 DEBUG Processing 400/630 atomic regions from SNP 119804 to 120404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,133 DEBUG Processing 608/853 atomic regions from SNP 182200 to 182800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,166 DEBUG Processing 505/996 atomic regions from SNP 151359 to 151959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,179 DEBUG Processing 476/1108 atomic regions from SNP 142569 to 143169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,341 DEBUG Processing 47/229 atomic regions from SNP 13892 to 14494 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:36,375 DEBUG Processing 623/831 atomic regions from SNP 186895 to 187495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,564 DEBUG Processing 401/630 atomic regions from SNP 120104 to 120704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,594 DEBUG Processing 609/853 atomic regions from SNP 182500 to 183100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,646 DEBUG Processing 506/996 atomic regions from SNP 151659 to 152259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,656 DEBUG Processing 477/1108 atomic regions from SNP 142869 to 143469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,677 DEBUG Processing 48/229 atomic regions from SNP 14194 to 14796 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:36,681 DEBUG Processing 624/831 atomic regions from SNP 187195 to 187795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,987 DEBUG Processing 402/630 atomic regions from SNP 120404 to 121004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,019 DEBUG Processing 610/853 atomic regions from SNP 182800 to 183400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,096 DEBUG Processing 625/831 atomic regions from SNP 187495 to 188095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,109 DEBUG Processing 49/229 atomic regions from SNP 14496 to 15098 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:37,124 DEBUG Processing 507/996 atomic regions from SNP 151959 to 152559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,133 DEBUG Processing 478/1108 atomic regions from SNP 143169 to 143769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,402 DEBUG Processing 403/630 atomic regions from SNP 120704 to 121304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,413 DEBUG Processing 611/853 atomic regions from SNP 183100 to 183700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,490 DEBUG Processing 626/831 atomic regions from SNP 187795 to 188395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,528 DEBUG Processing 50/229 atomic regions from SNP 14798 to 15400 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:37,570 DEBUG Processing 508/996 atomic regions from SNP 152259 to 152859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,574 DEBUG Processing 479/1108 atomic regions from SNP 143469 to 144069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,647 DEBUG Processing 404/630 atomic regions from SNP 121004 to 121604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,658 DEBUG Processing 612/853 atomic regions from SNP 183400 to 184000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,846 DEBUG Processing 627/831 atomic regions from SNP 188095 to 188695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,959 DEBUG Processing 51/229 atomic regions from SNP 15100 to 15702 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:38,064 DEBUG Processing 613/853 atomic regions from SNP 183700 to 184300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,068 DEBUG Processing 405/630 atomic regions from SNP 121304 to 121904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,069 DEBUG Processing 509/996 atomic regions from SNP 152559 to 153159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,083 DEBUG Processing 480/1108 atomic regions from SNP 143769 to 144369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,153 DEBUG Processing 628/831 atomic regions from SNP 188395 to 188995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,364 DEBUG Processing 52/229 atomic regions from SNP 15402 to 16003 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:38,528 DEBUG Processing 614/853 atomic regions from SNP 184000 to 184600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,554 DEBUG Processing 406/630 atomic regions from SNP 121604 to 122204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,573 DEBUG Processing 629/831 atomic regions from SNP 188695 to 189295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,581 DEBUG Processing 481/1108 atomic regions from SNP 144069 to 144669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,589 DEBUG Processing 510/996 atomic regions from SNP 152859 to 153459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,735 DEBUG Processing 53/229 atomic regions from SNP 15703 to 16304 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:38,932 DEBUG Processing 615/853 atomic regions from SNP 184300 to 184900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,947 DEBUG Processing 407/630 atomic regions from SNP 121904 to 122504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,986 DEBUG Processing 630/831 atomic regions from SNP 188995 to 189595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,044 DEBUG Processing 511/996 atomic regions from SNP 153159 to 153759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,047 DEBUG Processing 482/1108 atomic regions from SNP 144369 to 144969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,070 DEBUG Processing 54/229 atomic regions from SNP 16004 to 16605 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:39,293 DEBUG Processing 616/853 atomic regions from SNP 184600 to 185200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,297 DEBUG Processing 408/630 atomic regions from SNP 122204 to 122804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,355 DEBUG Processing 631/831 atomic regions from SNP 189295 to 189895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,477 DEBUG Processing 55/229 atomic regions from SNP 16305 to 16906 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:39,505 DEBUG Processing 512/996 atomic regions from SNP 153459 to 154059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,506 DEBUG Processing 483/1108 atomic regions from SNP 144669 to 145269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,601 DEBUG Processing 617/853 atomic regions from SNP 184900 to 185500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,622 DEBUG Processing 409/630 atomic regions from SNP 122504 to 123104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,625 DEBUG Processing 632/831 atomic regions from SNP 189595 to 190195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,823 DEBUG Processing 56/229 atomic regions from SNP 16606 to 17207 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:39,919 DEBUG Processing 633/831 atomic regions from SNP 189895 to 190495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,924 DEBUG Processing 618/853 atomic regions from SNP 185200 to 185800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,926 DEBUG Processing 513/996 atomic regions from SNP 153759 to 154359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,928 DEBUG Processing 484/1108 atomic regions from SNP 144969 to 145569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,959 DEBUG Processing 410/630 atomic regions from SNP 122804 to 123404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,077 DEBUG Processing 57/229 atomic regions from SNP 16907 to 17508 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:40,306 DEBUG Processing 634/831 atomic regions from SNP 190195 to 190795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,319 DEBUG Processing 514/996 atomic regions from SNP 154059 to 154659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,323 DEBUG Processing 619/853 atomic regions from SNP 185500 to 186100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,355 DEBUG Processing 411/630 atomic regions from SNP 123104 to 123704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,368 DEBUG Processing 485/1108 atomic regions from SNP 145269 to 145869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,396 DEBUG Processing 58/229 atomic regions from SNP 17208 to 17809 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:40,537 DEBUG Processing 635/831 atomic regions from SNP 190495 to 191095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,564 DEBUG Processing 620/853 atomic regions from SNP 185800 to 186400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,587 DEBUG Processing 515/996 atomic regions from SNP 154359 to 154959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,650 DEBUG Processing 412/630 atomic regions from SNP 123404 to 124004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,693 DEBUG Processing 59/229 atomic regions from SNP 17509 to 18110 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:40,708 DEBUG Processing 486/1108 atomic regions from SNP 145569 to 146169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,764 DEBUG Processing 636/831 atomic regions from SNP 190795 to 191395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,792 DEBUG Processing 621/853 atomic regions from SNP 186100 to 186700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,850 DEBUG Processing 516/996 atomic regions from SNP 154659 to 155259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,940 DEBUG Processing 413/630 atomic regions from SNP 123704 to 124304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,996 DEBUG Processing 60/229 atomic regions from SNP 17810 to 18411 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:41,045 DEBUG Processing 637/831 atomic regions from SNP 191095 to 191695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,067 DEBUG Processing 622/853 atomic regions from SNP 186400 to 187000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,073 DEBUG Processing 487/1108 atomic regions from SNP 145869 to 146469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,130 DEBUG Processing 517/996 atomic regions from SNP 154959 to 155559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,176 DEBUG Processing 414/630 atomic regions from SNP 124004 to 124604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,301 DEBUG Processing 61/229 atomic regions from SNP 18111 to 18712 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:41,369 DEBUG Processing 638/831 atomic regions from SNP 191395 to 191995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,400 DEBUG Processing 623/853 atomic regions from SNP 186700 to 187300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,439 DEBUG Processing 488/1108 atomic regions from SNP 146169 to 146769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,447 DEBUG Processing 415/630 atomic regions from SNP 124304 to 124904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,461 DEBUG Processing 518/996 atomic regions from SNP 155259 to 155859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,578 DEBUG Processing 62/229 atomic regions from SNP 18412 to 19013 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:41,692 DEBUG Processing 639/831 atomic regions from SNP 191695 to 192295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,744 DEBUG Processing 624/853 atomic regions from SNP 187000 to 187600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,794 DEBUG Processing 416/630 atomic regions from SNP 124604 to 125204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,827 DEBUG Processing 519/996 atomic regions from SNP 155559 to 156159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,829 DEBUG Processing 489/1108 atomic regions from SNP 146469 to 147069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,868 DEBUG Processing 63/229 atomic regions from SNP 18713 to 19314 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:41,984 DEBUG Processing 640/831 atomic regions from SNP 191995 to 192595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,077 DEBUG Processing 625/853 atomic regions from SNP 187300 to 187900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,186 DEBUG Processing 417/630 atomic regions from SNP 124904 to 125504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,233 DEBUG Processing 520/996 atomic regions from SNP 155859 to 156459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,234 DEBUG Processing 64/229 atomic regions from SNP 19014 to 19615 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:42,246 DEBUG Processing 490/1108 atomic regions from SNP 146769 to 147369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,306 DEBUG Processing 641/831 atomic regions from SNP 192295 to 192895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,341 DEBUG Processing 626/853 atomic regions from SNP 187600 to 188200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,587 DEBUG Processing 418/630 atomic regions from SNP 125204 to 125804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,629 DEBUG Processing 65/229 atomic regions from SNP 19315 to 19916 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:42,671 DEBUG Processing 521/996 atomic regions from SNP 156159 to 156759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,680 DEBUG Processing 491/1108 atomic regions from SNP 147069 to 147669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,682 DEBUG Processing 642/831 atomic regions from SNP 192595 to 193195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,708 DEBUG Processing 627/853 atomic regions from SNP 187900 to 188500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,944 DEBUG Processing 419/630 atomic regions from SNP 125504 to 126104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,992 DEBUG Processing 66/229 atomic regions from SNP 19616 to 20217 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:43,086 DEBUG Processing 522/996 atomic regions from SNP 156459 to 157059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,093 DEBUG Processing 643/831 atomic regions from SNP 192895 to 193495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,100 DEBUG Processing 628/853 atomic regions from SNP 188200 to 188800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,118 DEBUG Processing 492/1108 atomic regions from SNP 147369 to 147969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,175 DEBUG Processing 420/630 atomic regions from SNP 125804 to 126404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,227 DEBUG Processing 67/229 atomic regions from SNP 19917 to 20518 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:43,421 DEBUG Processing 523/996 atomic regions from SNP 156759 to 157359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,430 DEBUG Processing 629/853 atomic regions from SNP 188500 to 189100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,459 DEBUG Processing 644/831 atomic regions from SNP 193195 to 193795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,507 DEBUG Processing 493/1108 atomic regions from SNP 147669 to 148269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,541 DEBUG Processing 421/630 atomic regions from SNP 126104 to 126704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,552 DEBUG Processing 68/229 atomic regions from SNP 20218 to 20819 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:43,654 DEBUG Processing 630/853 atomic regions from SNP 188800 to 189400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,672 DEBUG Processing 524/996 atomic regions from SNP 157059 to 157659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,693 DEBUG Processing 645/831 atomic regions from SNP 193495 to 194095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,803 DEBUG Processing 494/1108 atomic regions from SNP 147969 to 148569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,851 DEBUG Processing 422/630 atomic regions from SNP 126404 to 127004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,879 DEBUG Processing 69/229 atomic regions from SNP 20519 to 21120 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:43,945 DEBUG Processing 631/853 atomic regions from SNP 189100 to 189700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,966 DEBUG Processing 646/831 atomic regions from SNP 193795 to 194395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,976 DEBUG Processing 525/996 atomic regions from SNP 157359 to 157959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,094 DEBUG Processing 495/1108 atomic regions from SNP 148269 to 148869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,170 DEBUG Processing 423/630 atomic regions from SNP 126704 to 127304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,244 DEBUG Processing 70/229 atomic regions from SNP 20820 to 21421 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:44,353 DEBUG Processing 632/853 atomic regions from SNP 189400 to 190000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,373 DEBUG Processing 647/831 atomic regions from SNP 194095 to 194695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,400 DEBUG Processing 526/996 atomic regions from SNP 157659 to 158259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,407 DEBUG Processing 424/630 atomic regions from SNP 127004 to 127604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,413 DEBUG Processing 496/1108 atomic regions from SNP 148569 to 149169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,476 DEBUG Processing 71/229 atomic regions from SNP 21121 to 21722 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:44,759 DEBUG Processing 633/853 atomic regions from SNP 189700 to 190300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,820 DEBUG Processing 648/831 atomic regions from SNP 194395 to 194995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,832 DEBUG Processing 425/630 atomic regions from SNP 127304 to 127904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,856 DEBUG Processing 72/229 atomic regions from SNP 21422 to 22023 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:44,864 DEBUG Processing 527/996 atomic regions from SNP 157959 to 158559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,889 DEBUG Processing 497/1108 atomic regions from SNP 148869 to 149469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,984 DEBUG Processing 634/853 atomic regions from SNP 190000 to 190600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,108 DEBUG Processing 649/831 atomic regions from SNP 194695 to 195295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,126 DEBUG Processing 426/630 atomic regions from SNP 127604 to 128204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,150 DEBUG Processing 73/229 atomic regions from SNP 21723 to 22324 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:45,182 DEBUG Processing 528/996 atomic regions from SNP 158259 to 158859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,218 DEBUG Processing 498/1108 atomic regions from SNP 149169 to 149769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,234 DEBUG Processing 635/853 atomic regions from SNP 190300 to 190900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,361 DEBUG Processing 650/831 atomic regions from SNP 194995 to 195595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,396 DEBUG Processing 74/229 atomic regions from SNP 22024 to 22625 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:45,398 DEBUG Processing 427/630 atomic regions from SNP 127904 to 128504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,461 DEBUG Processing 529/996 atomic regions from SNP 158559 to 159159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,523 DEBUG Processing 636/853 atomic regions from SNP 190600 to 191200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,553 DEBUG Processing 499/1108 atomic regions from SNP 149469 to 150069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,618 DEBUG Processing 75/229 atomic regions from SNP 22325 to 22926 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:45,628 DEBUG Processing 651/831 atomic regions from SNP 195295 to 195895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,643 DEBUG Processing 428/630 atomic regions from SNP 128204 to 128804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,713 DEBUG Processing 530/996 atomic regions from SNP 158859 to 159459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,792 DEBUG Processing 637/853 atomic regions from SNP 190900 to 191500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,912 DEBUG Processing 76/229 atomic regions from SNP 22626 to 23227 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:45,921 DEBUG Processing 500/1108 atomic regions from SNP 149769 to 150369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,939 DEBUG Processing 429/630 atomic regions from SNP 128504 to 129104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,941 DEBUG Processing 652/831 atomic regions from SNP 195595 to 196195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,985 DEBUG Processing 531/996 atomic regions from SNP 159159 to 159759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,016 DEBUG Processing 638/853 atomic regions from SNP 191200 to 191800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,227 DEBUG Processing 77/229 atomic regions from SNP 22927 to 23528 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:46,274 DEBUG Processing 430/630 atomic regions from SNP 128804 to 129404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,275 DEBUG Processing 501/1108 atomic regions from SNP 150069 to 150669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,295 DEBUG Processing 653/831 atomic regions from SNP 195895 to 196495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,330 DEBUG Processing 532/996 atomic regions from SNP 159459 to 160059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,337 DEBUG Processing 639/853 atomic regions from SNP 191500 to 192100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,446 DEBUG Processing 78/229 atomic regions from SNP 23228 to 23829 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:46,569 DEBUG Processing 431/630 atomic regions from SNP 129104 to 129704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,607 DEBUG Processing 502/1108 atomic regions from SNP 150369 to 150969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,645 DEBUG Processing 654/831 atomic regions from SNP 196195 to 196795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,706 DEBUG Processing 533/996 atomic regions from SNP 159759 to 160359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,713 DEBUG Processing 640/853 atomic regions from SNP 191800 to 192400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,752 DEBUG Processing 79/229 atomic regions from SNP 23529 to 24130 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:46,829 DEBUG Processing 432/630 atomic regions from SNP 129404 to 130004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,917 DEBUG Processing 503/1108 atomic regions from SNP 150669 to 151269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,978 DEBUG Processing 655/831 atomic regions from SNP 196495 to 197095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,095 DEBUG Processing 534/996 atomic regions from SNP 160059 to 160659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,102 DEBUG Processing 641/853 atomic regions from SNP 192100 to 192700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,125 DEBUG Processing 80/229 atomic regions from SNP 23830 to 24431 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:47,162 DEBUG Processing 433/630 atomic regions from SNP 129704 to 130304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,264 DEBUG Processing 504/1108 atomic regions from SNP 150969 to 151569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,292 DEBUG Processing 656/831 atomic regions from SNP 196795 to 197395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,494 DEBUG Processing 535/996 atomic regions from SNP 160359 to 160959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,501 DEBUG Processing 642/853 atomic regions from SNP 192400 to 193000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,511 DEBUG Processing 81/229 atomic regions from SNP 24131 to 24732 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:47,559 DEBUG Processing 434/630 atomic regions from SNP 130004 to 130604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,666 DEBUG Processing 657/831 atomic regions from SNP 197095 to 197695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,674 DEBUG Processing 505/1108 atomic regions from SNP 151269 to 151869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,906 DEBUG Processing 643/853 atomic regions from SNP 192700 to 193300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,912 DEBUG Processing 82/229 atomic regions from SNP 24432 to 25033 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:47,913 DEBUG Processing 536/996 atomic regions from SNP 160659 to 161259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,973 DEBUG Processing 435/630 atomic regions from SNP 130304 to 130904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,112 DEBUG Processing 658/831 atomic regions from SNP 197395 to 197995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,152 DEBUG Processing 506/1108 atomic regions from SNP 151569 to 152169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,300 DEBUG Processing 83/229 atomic regions from SNP 24733 to 25334 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:48,313 DEBUG Processing 644/853 atomic regions from SNP 193000 to 193600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,321 DEBUG Processing 537/996 atomic regions from SNP 160959 to 161559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,375 DEBUG Processing 436/630 atomic regions from SNP 130604 to 131204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,565 DEBUG Processing 659/831 atomic regions from SNP 197695 to 198295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,618 DEBUG Processing 507/1108 atomic regions from SNP 151869 to 152469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,678 DEBUG Processing 84/229 atomic regions from SNP 25034 to 25635 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:48,722 DEBUG Processing 645/853 atomic regions from SNP 193300 to 193900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,744 DEBUG Processing 538/996 atomic regions from SNP 161259 to 161859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,793 DEBUG Processing 437/630 atomic regions from SNP 130904 to 131504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,002 DEBUG Processing 660/831 atomic regions from SNP 197995 to 198595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,070 DEBUG Processing 85/229 atomic regions from SNP 25335 to 25936 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:49,071 DEBUG Processing 508/1108 atomic regions from SNP 152169 to 152769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,111 DEBUG Processing 646/853 atomic regions from SNP 193600 to 194200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,188 DEBUG Processing 539/996 atomic regions from SNP 161559 to 162159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,220 DEBUG Processing 438/630 atomic regions from SNP 131204 to 131804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,416 DEBUG Processing 661/831 atomic regions from SNP 198295 to 198895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,478 DEBUG Processing 86/229 atomic regions from SNP 25636 to 26237 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:49,491 DEBUG Processing 647/853 atomic regions from SNP 193900 to 194500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,508 DEBUG Processing 509/1108 atomic regions from SNP 152469 to 153069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,623 DEBUG Processing 540/996 atomic regions from SNP 161859 to 162459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,634 DEBUG Processing 439/630 atomic regions from SNP 131504 to 132104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,813 DEBUG Processing 662/831 atomic regions from SNP 198595 to 199195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,877 DEBUG Processing 87/229 atomic regions from SNP 25937 to 26538 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:49,895 DEBUG Processing 648/853 atomic regions from SNP 194200 to 194800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,954 DEBUG Processing 510/1108 atomic regions from SNP 152769 to 153369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,048 DEBUG Processing 541/996 atomic regions from SNP 162159 to 162759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,049 DEBUG Processing 440/630 atomic regions from SNP 131804 to 132404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,187 DEBUG Processing 663/831 atomic regions from SNP 198895 to 199495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,267 DEBUG Processing 88/229 atomic regions from SNP 26238 to 26839 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:50,286 DEBUG Processing 649/853 atomic regions from SNP 194500 to 195100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,411 DEBUG Processing 511/1108 atomic regions from SNP 153069 to 153669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,461 DEBUG Processing 441/630 atomic regions from SNP 132104 to 132704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,485 DEBUG Processing 542/996 atomic regions from SNP 162459 to 163059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,561 DEBUG Processing 664/831 atomic regions from SNP 199195 to 199795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,581 DEBUG Processing 89/229 atomic regions from SNP 26539 to 27140 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:50,597 DEBUG Processing 650/853 atomic regions from SNP 194800 to 195400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,860 DEBUG Processing 512/1108 atomic regions from SNP 153369 to 153969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,900 DEBUG Processing 442/630 atomic regions from SNP 132404 to 133004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,912 DEBUG Processing 543/996 atomic regions from SNP 162759 to 163359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,934 DEBUG Processing 90/229 atomic regions from SNP 26840 to 27441 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:50,949 DEBUG Processing 665/831 atomic regions from SNP 199495 to 200095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,955 DEBUG Processing 651/853 atomic regions from SNP 195100 to 195700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,136 DEBUG Processing 513/1108 atomic regions from SNP 153669 to 154269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,244 DEBUG Processing 443/630 atomic regions from SNP 132704 to 133304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,312 DEBUG Processing 91/229 atomic regions from SNP 27141 to 27742 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:51,324 DEBUG Processing 544/996 atomic regions from SNP 163059 to 163659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,346 DEBUG Processing 652/853 atomic regions from SNP 195400 to 196000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,365 DEBUG Processing 666/831 atomic regions from SNP 199795 to 200395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,464 DEBUG Processing 514/1108 atomic regions from SNP 153969 to 154569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,507 DEBUG Processing 444/630 atomic regions from SNP 133004 to 133604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,664 DEBUG Processing 92/229 atomic regions from SNP 27442 to 28043 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:51,743 DEBUG Processing 545/996 atomic regions from SNP 163359 to 163959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,766 DEBUG Processing 653/853 atomic regions from SNP 195700 to 196300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,794 DEBUG Processing 667/831 atomic regions from SNP 200095 to 200695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,862 DEBUG Processing 445/630 atomic regions from SNP 133304 to 133904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,877 DEBUG Processing 515/1108 atomic regions from SNP 154269 to 154869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,949 DEBUG Processing 93/229 atomic regions from SNP 27743 to 28344 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:52,137 DEBUG Processing 546/996 atomic regions from SNP 163659 to 164259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,178 DEBUG Processing 654/853 atomic regions from SNP 196000 to 196600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,227 DEBUG Processing 668/831 atomic regions from SNP 200395 to 200995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,266 DEBUG Processing 446/630 atomic regions from SNP 133604 to 134204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,296 DEBUG Processing 94/229 atomic regions from SNP 28044 to 28645 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:52,328 DEBUG Processing 516/1108 atomic regions from SNP 154569 to 155169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,540 DEBUG Processing 547/996 atomic regions from SNP 163959 to 164559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,602 DEBUG Processing 655/853 atomic regions from SNP 196300 to 196900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,648 DEBUG Processing 669/831 atomic regions from SNP 200695 to 201295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,696 DEBUG Processing 447/630 atomic regions from SNP 133904 to 134504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,707 DEBUG Processing 95/229 atomic regions from SNP 28345 to 28946 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:52,772 DEBUG Processing 517/1108 atomic regions from SNP 154869 to 155469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,941 DEBUG Processing 548/996 atomic regions from SNP 164259 to 164859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,999 DEBUG Processing 656/853 atomic regions from SNP 196600 to 197200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,039 DEBUG Processing 670/831 atomic regions from SNP 200995 to 201595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,115 DEBUG Processing 96/229 atomic regions from SNP 28646 to 29247 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:53,118 DEBUG Processing 448/630 atomic regions from SNP 134204 to 134804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,228 DEBUG Processing 518/1108 atomic regions from SNP 155169 to 155769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,372 DEBUG Processing 549/996 atomic regions from SNP 164559 to 165159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,415 DEBUG Processing 657/853 atomic regions from SNP 196900 to 197500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,450 DEBUG Processing 671/831 atomic regions from SNP 201295 to 201895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,549 DEBUG Processing 97/229 atomic regions from SNP 28947 to 29548 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:53,566 DEBUG Processing 449/630 atomic regions from SNP 134504 to 135104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,711 DEBUG Processing 519/1108 atomic regions from SNP 155469 to 156069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,828 DEBUG Processing 550/996 atomic regions from SNP 164859 to 165459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,832 DEBUG Processing 658/853 atomic regions from SNP 197200 to 197800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,869 DEBUG Processing 672/831 atomic regions from SNP 201595 to 202195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,974 DEBUG Processing 98/229 atomic regions from SNP 29248 to 29849 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:54,022 DEBUG Processing 450/630 atomic regions from SNP 134804 to 135404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,193 DEBUG Processing 520/1108 atomic regions from SNP 155769 to 156369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,253 DEBUG Processing 659/853 atomic regions from SNP 197500 to 198100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,295 DEBUG Processing 551/996 atomic regions from SNP 165159 to 165759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,324 DEBUG Processing 673/831 atomic regions from SNP 201895 to 202495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,397 DEBUG Processing 99/229 atomic regions from SNP 29549 to 30150 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:54,438 DEBUG Processing 451/630 atomic regions from SNP 135104 to 135704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,610 DEBUG Processing 660/853 atomic regions from SNP 197800 to 198400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,634 DEBUG Processing 521/1108 atomic regions from SNP 156069 to 156669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,662 DEBUG Processing 552/996 atomic regions from SNP 165459 to 166059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,723 DEBUG Processing 674/831 atomic regions from SNP 202195 to 202795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,779 DEBUG Processing 100/229 atomic regions from SNP 29850 to 30451 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:54,798 DEBUG Processing 452/630 atomic regions from SNP 135404 to 136004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,852 DEBUG Processing 661/853 atomic regions from SNP 198100 to 198700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,917 DEBUG Processing 553/996 atomic regions from SNP 165759 to 166359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,949 DEBUG Processing 522/1108 atomic regions from SNP 156369 to 156969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,962 DEBUG Processing 675/831 atomic regions from SNP 202495 to 203095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,098 DEBUG Processing 101/229 atomic regions from SNP 30151 to 30752 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:55,145 DEBUG Processing 453/630 atomic regions from SNP 135704 to 136304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,166 DEBUG Processing 662/853 atomic regions from SNP 198400 to 199000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,207 DEBUG Processing 676/831 atomic regions from SNP 202795 to 203395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,212 DEBUG Processing 554/996 atomic regions from SNP 166059 to 166659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,243 DEBUG Processing 523/1108 atomic regions from SNP 156669 to 157269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,346 DEBUG Processing 102/229 atomic regions from SNP 30452 to 31053 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:55,480 DEBUG Processing 454/630 atomic regions from SNP 136004 to 136604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,531 DEBUG Processing 663/853 atomic regions from SNP 198700 to 199300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,551 DEBUG Processing 677/831 atomic regions from SNP 203095 to 203695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,592 DEBUG Processing 555/996 atomic regions from SNP 166359 to 166959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,622 DEBUG Processing 103/229 atomic regions from SNP 30753 to 31354 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:55,626 DEBUG Processing 524/1108 atomic regions from SNP 156969 to 157569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,788 DEBUG Processing 455/630 atomic regions from SNP 136304 to 136904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,874 DEBUG Processing 664/853 atomic regions from SNP 199000 to 199600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,895 DEBUG Processing 678/831 atomic regions from SNP 203395 to 203995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,991 DEBUG Processing 104/229 atomic regions from SNP 31054 to 31655 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:56,003 DEBUG Processing 556/996 atomic regions from SNP 166659 to 167259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,017 DEBUG Processing 525/1108 atomic regions from SNP 157269 to 157869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,116 DEBUG Processing 456/630 atomic regions from SNP 136604 to 137204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,173 DEBUG Processing 665/853 atomic regions from SNP 199300 to 199900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,209 DEBUG Processing 679/831 atomic regions from SNP 203695 to 204295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,380 DEBUG Processing 105/229 atomic regions from SNP 31355 to 31956 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:56,426 DEBUG Processing 557/996 atomic regions from SNP 166959 to 167559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,442 DEBUG Processing 526/1108 atomic regions from SNP 157569 to 158169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,489 DEBUG Processing 457/630 atomic regions from SNP 136904 to 137504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,490 DEBUG Processing 666/853 atomic regions from SNP 199600 to 200200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,525 DEBUG Processing 680/831 atomic regions from SNP 203995 to 204595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,732 DEBUG Processing 106/229 atomic regions from SNP 31656 to 32257 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:56,844 DEBUG Processing 558/996 atomic regions from SNP 167259 to 167859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,897 DEBUG Processing 527/1108 atomic regions from SNP 157869 to 158469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,917 DEBUG Processing 458/630 atomic regions from SNP 137204 to 137804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,919 DEBUG Processing 681/831 atomic regions from SNP 204295 to 204895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,920 DEBUG Processing 667/853 atomic regions from SNP 199900 to 200500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,993 DEBUG Processing 107/229 atomic regions from SNP 31957 to 32558 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:57,179 DEBUG Processing 559/996 atomic regions from SNP 167559 to 168159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,339 DEBUG Processing 528/1108 atomic regions from SNP 158169 to 158769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,369 DEBUG Processing 682/831 atomic regions from SNP 204595 to 205195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,371 DEBUG Processing 459/630 atomic regions from SNP 137504 to 138104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,376 DEBUG Processing 668/853 atomic regions from SNP 200200 to 200800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,405 DEBUG Processing 108/229 atomic regions from SNP 32258 to 32859 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:57,493 DEBUG Processing 560/996 atomic regions from SNP 167859 to 168459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,769 DEBUG Processing 529/1108 atomic regions from SNP 158469 to 159069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,808 DEBUG Processing 683/831 atomic regions from SNP 204895 to 205495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,812 DEBUG Processing 460/630 atomic regions from SNP 137804 to 138404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,827 DEBUG Processing 669/853 atomic regions from SNP 200500 to 201100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,875 DEBUG Processing 109/229 atomic regions from SNP 32559 to 33160 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:57,952 DEBUG Processing 561/996 atomic regions from SNP 168159 to 168759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,098 DEBUG Processing 530/1108 atomic regions from SNP 158769 to 159369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,137 DEBUG Processing 684/831 atomic regions from SNP 205195 to 205795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,162 DEBUG Processing 461/630 atomic regions from SNP 138104 to 138704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,180 DEBUG Processing 670/853 atomic regions from SNP 200800 to 201400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,259 DEBUG Processing 110/229 atomic regions from SNP 32860 to 33461 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:58,354 DEBUG Processing 562/996 atomic regions from SNP 168459 to 169059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,384 DEBUG Processing 685/831 atomic regions from SNP 205495 to 206095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,398 DEBUG Processing 462/630 atomic regions from SNP 138404 to 139004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,415 DEBUG Processing 671/853 atomic regions from SNP 201100 to 201700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,416 DEBUG Processing 531/1108 atomic regions from SNP 159069 to 159669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,487 DEBUG Processing 111/229 atomic regions from SNP 33161 to 33762 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:58,710 DEBUG Processing 686/831 atomic regions from SNP 205795 to 206395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,734 DEBUG Processing 463/630 atomic regions from SNP 138704 to 139304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,738 DEBUG Processing 563/996 atomic regions from SNP 168759 to 169359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,755 DEBUG Processing 672/853 atomic regions from SNP 201400 to 202000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,759 DEBUG Processing 112/229 atomic regions from SNP 33462 to 34063 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:58,789 DEBUG Processing 532/1108 atomic regions from SNP 159369 to 159969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,997 DEBUG Processing 687/831 atomic regions from SNP 206095 to 206695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,026 DEBUG Processing 464/630 atomic regions from SNP 139004 to 139604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,035 DEBUG Processing 564/996 atomic regions from SNP 169059 to 169659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,039 DEBUG Processing 113/229 atomic regions from SNP 33763 to 34364 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:59,053 DEBUG Processing 673/853 atomic regions from SNP 201700 to 202300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,114 DEBUG Processing 533/1108 atomic regions from SNP 159669 to 160269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,248 DEBUG Processing 688/831 atomic regions from SNP 206395 to 206995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,290 DEBUG Processing 465/630 atomic regions from SNP 139304 to 139904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,304 DEBUG Processing 114/229 atomic regions from SNP 34064 to 34665 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:59,334 DEBUG Processing 674/853 atomic regions from SNP 202000 to 202600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,335 DEBUG Processing 565/996 atomic regions from SNP 169359 to 169959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,435 DEBUG Processing 534/1108 atomic regions from SNP 159969 to 160569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,507 DEBUG Processing 689/831 atomic regions from SNP 206695 to 207295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,560 DEBUG Processing 466/630 atomic regions from SNP 139604 to 140204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,577 DEBUG Processing 115/229 atomic regions from SNP 34365 to 34966 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:59,596 DEBUG Processing 675/853 atomic regions from SNP 202300 to 202900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,620 DEBUG Processing 566/996 atomic regions from SNP 169659 to 170259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,775 DEBUG Processing 535/1108 atomic regions from SNP 160269 to 160869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,812 DEBUG Processing 690/831 atomic regions from SNP 206995 to 207595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,838 DEBUG Processing 467/630 atomic regions from SNP 139904 to 140504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,843 DEBUG Processing 116/229 atomic regions from SNP 34666 to 35267 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:59,848 DEBUG Processing 676/853 atomic regions from SNP 202600 to 203200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,901 DEBUG Processing 567/996 atomic regions from SNP 169959 to 170559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,056 DEBUG Processing 536/1108 atomic regions from SNP 160569 to 161169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,091 DEBUG Processing 691/831 atomic regions from SNP 207295 to 207895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,116 DEBUG Processing 468/630 atomic regions from SNP 140204 to 140804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,136 DEBUG Processing 117/229 atomic regions from SNP 34967 to 35568 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:00,142 DEBUG Processing 677/853 atomic regions from SNP 202900 to 203500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,215 DEBUG Processing 568/996 atomic regions from SNP 170259 to 170859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,347 DEBUG Processing 537/1108 atomic regions from SNP 160869 to 161469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,359 DEBUG Processing 692/831 atomic regions from SNP 207595 to 208195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,379 DEBUG Processing 469/630 atomic regions from SNP 140504 to 141104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,390 DEBUG Processing 118/229 atomic regions from SNP 35268 to 35869 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:00,404 DEBUG Processing 678/853 atomic regions from SNP 203200 to 203800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,488 DEBUG Processing 569/996 atomic regions from SNP 170559 to 171159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,590 DEBUG Processing 693/831 atomic regions from SNP 207895 to 208495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,613 DEBUG Processing 538/1108 atomic regions from SNP 161169 to 161769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,617 DEBUG Processing 470/630 atomic regions from SNP 140804 to 141404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,623 DEBUG Processing 119/229 atomic regions from SNP 35569 to 36170 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:00,654 DEBUG Processing 679/853 atomic regions from SNP 203500 to 204100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,748 DEBUG Processing 570/996 atomic regions from SNP 170859 to 171459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,817 DEBUG Processing 694/831 atomic regions from SNP 208195 to 208795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,849 DEBUG Processing 471/630 atomic regions from SNP 141104 to 141704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,851 DEBUG Processing 120/229 atomic regions from SNP 35870 to 36471 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:00,879 DEBUG Processing 539/1108 atomic regions from SNP 161469 to 162069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,897 DEBUG Processing 680/853 atomic regions from SNP 203800 to 204400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,012 DEBUG Processing 571/996 atomic regions from SNP 171159 to 171759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,066 DEBUG Processing 695/831 atomic regions from SNP 208495 to 209095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,085 DEBUG Processing 472/630 atomic regions from SNP 141404 to 142004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,102 DEBUG Processing 121/229 atomic regions from SNP 36171 to 36772 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:01,144 DEBUG Processing 681/853 atomic regions from SNP 204100 to 204700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,150 DEBUG Processing 540/1108 atomic regions from SNP 161769 to 162369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,284 DEBUG Processing 572/996 atomic regions from SNP 171459 to 172059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,306 DEBUG Processing 696/831 atomic regions from SNP 208795 to 209395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,327 DEBUG Processing 473/630 atomic regions from SNP 141704 to 142304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,343 DEBUG Processing 122/229 atomic regions from SNP 36472 to 37073 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:01,410 DEBUG Processing 682/853 atomic regions from SNP 204400 to 205000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,442 DEBUG Processing 541/1108 atomic regions from SNP 162069 to 162669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,536 DEBUG Processing 697/831 atomic regions from SNP 209095 to 209695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,551 DEBUG Processing 573/996 atomic regions from SNP 171759 to 172359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,572 DEBUG Processing 474/630 atomic regions from SNP 142004 to 142604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,575 DEBUG Processing 123/229 atomic regions from SNP 36773 to 37374 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:01,659 DEBUG Processing 683/853 atomic regions from SNP 204700 to 205300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,717 DEBUG Processing 542/1108 atomic regions from SNP 162369 to 162969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,770 DEBUG Processing 698/831 atomic regions from SNP 209395 to 209995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,802 DEBUG Processing 124/229 atomic regions from SNP 37074 to 37675 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:01,809 DEBUG Processing 574/996 atomic regions from SNP 172059 to 172659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,826 DEBUG Processing 475/630 atomic regions from SNP 142304 to 142904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,908 DEBUG Processing 684/853 atomic regions from SNP 205000 to 205600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,994 DEBUG Processing 543/1108 atomic regions from SNP 162669 to 163269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,006 DEBUG Processing 699/831 atomic regions from SNP 209695 to 210295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,033 DEBUG Processing 125/229 atomic regions from SNP 37375 to 37976 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:02,066 DEBUG Processing 575/996 atomic regions from SNP 172359 to 172959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,081 DEBUG Processing 476/630 atomic regions from SNP 142604 to 143204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,144 DEBUG Processing 685/853 atomic regions from SNP 205300 to 205900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,269 DEBUG Processing 126/229 atomic regions from SNP 37676 to 38277 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:02,277 DEBUG Processing 700/831 atomic regions from SNP 209995 to 210595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,278 DEBUG Processing 544/1108 atomic regions from SNP 162969 to 163569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,327 DEBUG Processing 576/996 atomic regions from SNP 172659 to 173259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,333 DEBUG Processing 477/630 atomic regions from SNP 142904 to 143504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,379 DEBUG Processing 686/853 atomic regions from SNP 205600 to 206200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,506 DEBUG Processing 127/229 atomic regions from SNP 37977 to 38578 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:02,540 DEBUG Processing 701/831 atomic regions from SNP 210295 to 210895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,552 DEBUG Processing 545/1108 atomic regions from SNP 163269 to 163869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,589 DEBUG Processing 577/996 atomic regions from SNP 172959 to 173559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,589 DEBUG Processing 478/630 atomic regions from SNP 143204 to 143804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,616 DEBUG Processing 687/853 atomic regions from SNP 205900 to 206500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,735 DEBUG Processing 128/229 atomic regions from SNP 38278 to 38879 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:02,799 DEBUG Processing 702/831 atomic regions from SNP 210595 to 211195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,826 DEBUG Processing 546/1108 atomic regions from SNP 163569 to 164169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,826 DEBUG Processing 479/630 atomic regions from SNP 143504 to 144104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,850 DEBUG Processing 578/996 atomic regions from SNP 173259 to 173859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,856 DEBUG Processing 688/853 atomic regions from SNP 206200 to 206800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,965 DEBUG Processing 129/229 atomic regions from SNP 38579 to 39180 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:03,045 DEBUG Processing 703/831 atomic regions from SNP 210895 to 211495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,062 DEBUG Processing 480/630 atomic regions from SNP 143804 to 144404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,098 DEBUG Processing 689/853 atomic regions from SNP 206500 to 207100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,102 DEBUG Processing 547/1108 atomic regions from SNP 163869 to 164469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,110 DEBUG Processing 579/996 atomic regions from SNP 173559 to 174159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,196 DEBUG Processing 130/229 atomic regions from SNP 38880 to 39481 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:03,280 DEBUG Processing 704/831 atomic regions from SNP 211195 to 211795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,302 DEBUG Processing 481/630 atomic regions from SNP 144104 to 144704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,340 DEBUG Processing 690/853 atomic regions from SNP 206800 to 207400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,372 DEBUG Processing 580/996 atomic regions from SNP 173859 to 174459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,383 DEBUG Processing 548/1108 atomic regions from SNP 164169 to 164769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,427 DEBUG Processing 131/229 atomic regions from SNP 39181 to 39782 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:03,511 DEBUG Processing 705/831 atomic regions from SNP 211495 to 212095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,538 DEBUG Processing 482/630 atomic regions from SNP 144404 to 145004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,582 DEBUG Processing 691/853 atomic regions from SNP 207100 to 207700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,637 DEBUG Processing 581/996 atomic regions from SNP 174159 to 174759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,659 DEBUG Processing 132/229 atomic regions from SNP 39482 to 40083 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:03,665 DEBUG Processing 549/1108 atomic regions from SNP 164469 to 165069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,739 DEBUG Processing 706/831 atomic regions from SNP 211795 to 212395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,774 DEBUG Processing 483/630 atomic regions from SNP 144704 to 145304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,823 DEBUG Processing 692/853 atomic regions from SNP 207400 to 208000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,896 DEBUG Processing 133/229 atomic regions from SNP 39783 to 40384 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:03,905 DEBUG Processing 582/996 atomic regions from SNP 174459 to 175059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,941 DEBUG Processing 550/1108 atomic regions from SNP 164769 to 165369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,970 DEBUG Processing 707/831 atomic regions from SNP 212095 to 212695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,001 DEBUG Processing 484/630 atomic regions from SNP 145004 to 145604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,061 DEBUG Processing 693/853 atomic regions from SNP 207700 to 208300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,136 DEBUG Processing 134/229 atomic regions from SNP 40084 to 40685 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:04,174 DEBUG Processing 583/996 atomic regions from SNP 174759 to 175359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,204 DEBUG Processing 708/831 atomic regions from SNP 212395 to 212995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,216 DEBUG Processing 551/1108 atomic regions from SNP 165069 to 165669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,238 DEBUG Processing 485/630 atomic regions from SNP 145304 to 145904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,305 DEBUG Processing 694/853 atomic regions from SNP 208000 to 208600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,370 DEBUG Processing 135/229 atomic regions from SNP 40385 to 40986 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:04,440 DEBUG Processing 584/996 atomic regions from SNP 175059 to 175659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,445 DEBUG Processing 709/831 atomic regions from SNP 212695 to 213295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,479 DEBUG Processing 486/630 atomic regions from SNP 145604 to 146204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,493 DEBUG Processing 552/1108 atomic regions from SNP 165369 to 165969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,557 DEBUG Processing 695/853 atomic regions from SNP 208300 to 208900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,599 DEBUG Processing 136/229 atomic regions from SNP 40686 to 41287 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:04,684 DEBUG Processing 710/831 atomic regions from SNP 212995 to 213595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,702 DEBUG Processing 585/996 atomic regions from SNP 175359 to 175959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,721 DEBUG Processing 487/630 atomic regions from SNP 145904 to 146504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,771 DEBUG Processing 553/1108 atomic regions from SNP 165669 to 166269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,812 DEBUG Processing 696/853 atomic regions from SNP 208600 to 209200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,827 DEBUG Processing 137/229 atomic regions from SNP 40987 to 41588 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:04,924 DEBUG Processing 711/831 atomic regions from SNP 213295 to 213895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,958 DEBUG Processing 586/996 atomic regions from SNP 175659 to 176259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,961 DEBUG Processing 488/630 atomic regions from SNP 146204 to 146804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,049 DEBUG Processing 554/1108 atomic regions from SNP 165969 to 166569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,064 DEBUG Processing 138/229 atomic regions from SNP 41288 to 41889 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:05,068 DEBUG Processing 697/853 atomic regions from SNP 208900 to 209500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,158 DEBUG Processing 712/831 atomic regions from SNP 213595 to 214195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,201 DEBUG Processing 489/630 atomic regions from SNP 146504 to 147104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,212 DEBUG Processing 587/996 atomic regions from SNP 175959 to 176559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,305 DEBUG Processing 698/853 atomic regions from SNP 209200 to 209800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,317 DEBUG Processing 139/229 atomic regions from SNP 41589 to 42190 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:05,334 DEBUG Processing 555/1108 atomic regions from SNP 166269 to 166869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,401 DEBUG Processing 713/831 atomic regions from SNP 213895 to 214495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,449 DEBUG Processing 490/630 atomic regions from SNP 146804 to 147404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,468 DEBUG Processing 588/996 atomic regions from SNP 176259 to 176859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,545 DEBUG Processing 699/853 atomic regions from SNP 209500 to 210100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,560 DEBUG Processing 140/229 atomic regions from SNP 41890 to 42491 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:05,605 DEBUG Processing 556/1108 atomic regions from SNP 166569 to 167169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,637 DEBUG Processing 714/831 atomic regions from SNP 214195 to 214795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,713 DEBUG Processing 491/630 atomic regions from SNP 147104 to 147704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,723 DEBUG Processing 589/996 atomic regions from SNP 176559 to 177159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,785 DEBUG Processing 700/853 atomic regions from SNP 209800 to 210400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,803 DEBUG Processing 141/229 atomic regions from SNP 42191 to 42792 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:05,870 DEBUG Processing 715/831 atomic regions from SNP 214495 to 215095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,875 DEBUG Processing 557/1108 atomic regions from SNP 166869 to 167469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,971 DEBUG Processing 492/630 atomic regions from SNP 147404 to 148004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,982 DEBUG Processing 590/996 atomic regions from SNP 176859 to 177459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,039 DEBUG Processing 701/853 atomic regions from SNP 210100 to 210700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,050 DEBUG Processing 142/229 atomic regions from SNP 42492 to 43093 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:06,106 DEBUG Processing 716/831 atomic regions from SNP 214795 to 215395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,148 DEBUG Processing 558/1108 atomic regions from SNP 167169 to 167769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,233 DEBUG Processing 493/630 atomic regions from SNP 147704 to 148304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,243 DEBUG Processing 591/996 atomic regions from SNP 177159 to 177759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,295 DEBUG Processing 143/229 atomic regions from SNP 42793 to 43394 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:06,299 DEBUG Processing 702/853 atomic regions from SNP 210400 to 211000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,348 DEBUG Processing 717/831 atomic regions from SNP 215095 to 215695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,420 DEBUG Processing 559/1108 atomic regions from SNP 167469 to 168069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,494 DEBUG Processing 494/630 atomic regions from SNP 148004 to 148604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,505 DEBUG Processing 592/996 atomic regions from SNP 177459 to 178059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,540 DEBUG Processing 144/229 atomic regions from SNP 43094 to 43695 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:06,544 DEBUG Processing 703/853 atomic regions from SNP 210700 to 211300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,591 DEBUG Processing 718/831 atomic regions from SNP 215395 to 215995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,690 DEBUG Processing 560/1108 atomic regions from SNP 167769 to 168369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,757 DEBUG Processing 495/630 atomic regions from SNP 148304 to 148904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,766 DEBUG Processing 593/996 atomic regions from SNP 177759 to 178359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,782 DEBUG Processing 145/229 atomic regions from SNP 43395 to 43996 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:06,785 DEBUG Processing 704/853 atomic regions from SNP 211000 to 211600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,832 DEBUG Processing 719/831 atomic regions from SNP 215695 to 216295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,960 DEBUG Processing 561/1108 atomic regions from SNP 168069 to 168669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,016 DEBUG Processing 496/630 atomic regions from SNP 148604 to 149204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,020 DEBUG Processing 146/229 atomic regions from SNP 43696 to 44297 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:07,028 DEBUG Processing 705/853 atomic regions from SNP 211300 to 211900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,031 DEBUG Processing 594/996 atomic regions from SNP 178059 to 178659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,071 DEBUG Processing 720/831 atomic regions from SNP 215995 to 216595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,233 DEBUG Processing 562/1108 atomic regions from SNP 168369 to 168969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,265 DEBUG Processing 147/229 atomic regions from SNP 43997 to 44598 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:07,273 DEBUG Processing 497/630 atomic regions from SNP 148904 to 149504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,277 DEBUG Processing 706/853 atomic regions from SNP 211600 to 212200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,302 DEBUG Processing 595/996 atomic regions from SNP 178359 to 178959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,312 DEBUG Processing 721/831 atomic regions from SNP 216295 to 216895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,506 DEBUG Processing 148/229 atomic regions from SNP 44298 to 44899 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:07,509 DEBUG Processing 563/1108 atomic regions from SNP 168669 to 169269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,528 DEBUG Processing 707/853 atomic regions from SNP 211900 to 212500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,538 DEBUG Processing 498/630 atomic regions from SNP 149204 to 149804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,555 DEBUG Processing 722/831 atomic regions from SNP 216595 to 217195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,574 DEBUG Processing 596/996 atomic regions from SNP 178659 to 179259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,748 DEBUG Processing 149/229 atomic regions from SNP 44599 to 45200 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:07,779 DEBUG Processing 708/853 atomic regions from SNP 212200 to 212800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,789 DEBUG Processing 564/1108 atomic regions from SNP 168969 to 169569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,797 DEBUG Processing 499/630 atomic regions from SNP 149504 to 150104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,801 DEBUG Processing 723/831 atomic regions from SNP 216895 to 217495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,844 DEBUG Processing 597/996 atomic regions from SNP 178959 to 179559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,993 DEBUG Processing 150/229 atomic regions from SNP 44900 to 45501 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:08,026 DEBUG Processing 709/853 atomic regions from SNP 212500 to 213100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,049 DEBUG Processing 724/831 atomic regions from SNP 217195 to 217795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,069 DEBUG Processing 500/630 atomic regions from SNP 149804 to 150404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,073 DEBUG Processing 565/1108 atomic regions from SNP 169269 to 169869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,123 DEBUG Processing 598/996 atomic regions from SNP 179259 to 179859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,217 DEBUG Processing 151/229 atomic regions from SNP 45201 to 45802 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:08,265 DEBUG Processing 710/853 atomic regions from SNP 212800 to 213400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,294 DEBUG Processing 725/831 atomic regions from SNP 217495 to 218095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,340 DEBUG Processing 501/630 atomic regions from SNP 150104 to 150704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,356 DEBUG Processing 566/1108 atomic regions from SNP 169569 to 170169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,400 DEBUG Processing 599/996 atomic regions from SNP 179559 to 180159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,452 DEBUG Processing 152/229 atomic regions from SNP 45502 to 46103 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:08,492 DEBUG Processing 711/853 atomic regions from SNP 213100 to 213700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,530 DEBUG Processing 726/831 atomic regions from SNP 217795 to 218395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,599 DEBUG Processing 502/630 atomic regions from SNP 150404 to 151004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,636 DEBUG Processing 567/1108 atomic regions from SNP 169869 to 170469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,673 DEBUG Processing 600/996 atomic regions from SNP 179859 to 180459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,695 DEBUG Processing 153/229 atomic regions from SNP 45803 to 46404 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:08,723 DEBUG Processing 712/853 atomic regions from SNP 213400 to 214000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,769 DEBUG Processing 727/831 atomic regions from SNP 218095 to 218695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,860 DEBUG Processing 503/630 atomic regions from SNP 150704 to 151304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,915 DEBUG Processing 568/1108 atomic regions from SNP 170169 to 170769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,946 DEBUG Processing 154/229 atomic regions from SNP 46104 to 46705 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:08,947 DEBUG Processing 601/996 atomic regions from SNP 180159 to 180759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,968 DEBUG Processing 713/853 atomic regions from SNP 213700 to 214300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,011 DEBUG Processing 728/831 atomic regions from SNP 218395 to 218995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,112 DEBUG Processing 504/630 atomic regions from SNP 151004 to 151604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,193 DEBUG Processing 155/229 atomic regions from SNP 46405 to 47006 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:09,208 DEBUG Processing 569/1108 atomic regions from SNP 170469 to 171069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,218 DEBUG Processing 714/853 atomic regions from SNP 214000 to 214600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,221 DEBUG Processing 602/996 atomic regions from SNP 180459 to 181059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,259 DEBUG Processing 729/831 atomic regions from SNP 218695 to 219295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,367 DEBUG Processing 505/630 atomic regions from SNP 151304 to 151904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,432 DEBUG Processing 156/229 atomic regions from SNP 46706 to 47307 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:09,466 DEBUG Processing 715/853 atomic regions from SNP 214300 to 214900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,489 DEBUG Processing 570/1108 atomic regions from SNP 170769 to 171369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,491 DEBUG Processing 603/996 atomic regions from SNP 180759 to 181359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,505 DEBUG Processing 730/831 atomic regions from SNP 218995 to 219595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,615 DEBUG Processing 506/630 atomic regions from SNP 151604 to 152204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,662 DEBUG Processing 157/229 atomic regions from SNP 47007 to 47608 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:09,706 DEBUG Processing 716/853 atomic regions from SNP 214600 to 215200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,759 DEBUG Processing 731/831 atomic regions from SNP 219295 to 219895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,763 DEBUG Processing 604/996 atomic regions from SNP 181059 to 181659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,770 DEBUG Processing 571/1108 atomic regions from SNP 171069 to 171669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,867 DEBUG Processing 507/630 atomic regions from SNP 151904 to 152504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,891 DEBUG Processing 158/229 atomic regions from SNP 47308 to 47909 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:09,942 DEBUG Processing 717/853 atomic regions from SNP 214900 to 215500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,025 DEBUG Processing 605/996 atomic regions from SNP 181359 to 181959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,031 DEBUG Processing 732/831 atomic regions from SNP 219595 to 220195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,048 DEBUG Processing 572/1108 atomic regions from SNP 171369 to 171969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,123 DEBUG Processing 159/229 atomic regions from SNP 47609 to 48210 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:10,135 DEBUG Processing 508/630 atomic regions from SNP 152204 to 152804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,179 DEBUG Processing 718/853 atomic regions from SNP 215200 to 215800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,287 DEBUG Processing 606/996 atomic regions from SNP 181659 to 182259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,293 DEBUG Processing 733/831 atomic regions from SNP 219895 to 220495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,329 DEBUG Processing 573/1108 atomic regions from SNP 171669 to 172269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,349 DEBUG Processing 160/229 atomic regions from SNP 47910 to 48511 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:10,392 DEBUG Processing 509/630 atomic regions from SNP 152504 to 153104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,420 DEBUG Processing 719/853 atomic regions from SNP 215500 to 216100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,530 DEBUG Processing 734/831 atomic regions from SNP 220195 to 220795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,551 DEBUG Processing 607/996 atomic regions from SNP 181959 to 182559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,576 DEBUG Processing 161/229 atomic regions from SNP 48211 to 48812 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:10,596 DEBUG Processing 574/1108 atomic regions from SNP 171969 to 172569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,656 DEBUG Processing 510/630 atomic regions from SNP 152804 to 153404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,660 DEBUG Processing 720/853 atomic regions from SNP 215800 to 216400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,774 DEBUG Processing 735/831 atomic regions from SNP 220495 to 221095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,815 DEBUG Processing 162/229 atomic regions from SNP 48512 to 49113 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:10,821 DEBUG Processing 608/996 atomic regions from SNP 182259 to 182859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,863 DEBUG Processing 575/1108 atomic regions from SNP 172269 to 172869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,894 DEBUG Processing 721/853 atomic regions from SNP 216100 to 216700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,906 DEBUG Processing 511/630 atomic regions from SNP 153104 to 153704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,014 DEBUG Processing 736/831 atomic regions from SNP 220795 to 221395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,055 DEBUG Processing 163/229 atomic regions from SNP 48813 to 49414 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:11,086 DEBUG Processing 609/996 atomic regions from SNP 182559 to 183159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,131 DEBUG Processing 722/853 atomic regions from SNP 216400 to 217000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,135 DEBUG Processing 576/1108 atomic regions from SNP 172569 to 173169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,152 DEBUG Processing 512/630 atomic regions from SNP 153404 to 154004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,264 DEBUG Processing 737/831 atomic regions from SNP 221095 to 221695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,297 DEBUG Processing 164/229 atomic regions from SNP 49114 to 49715 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:11,353 DEBUG Processing 610/996 atomic regions from SNP 182859 to 183459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,373 DEBUG Processing 723/853 atomic regions from SNP 216700 to 217300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,411 DEBUG Processing 577/1108 atomic regions from SNP 172869 to 173469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,411 DEBUG Processing 513/630 atomic regions from SNP 153704 to 154304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,522 DEBUG Processing 738/831 atomic regions from SNP 221395 to 221995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,531 DEBUG Processing 165/229 atomic regions from SNP 49415 to 50016 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:11,614 DEBUG Processing 724/853 atomic regions from SNP 217000 to 217600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,615 DEBUG Processing 611/996 atomic regions from SNP 183159 to 183759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,674 DEBUG Processing 514/630 atomic regions from SNP 154004 to 154604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,691 DEBUG Processing 578/1108 atomic regions from SNP 173169 to 173769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,765 DEBUG Processing 166/229 atomic regions from SNP 49716 to 50317 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:11,778 DEBUG Processing 739/831 atomic regions from SNP 221695 to 222295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,850 DEBUG Processing 725/853 atomic regions from SNP 217300 to 217900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,874 DEBUG Processing 612/996 atomic regions from SNP 183459 to 184059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,943 DEBUG Processing 515/630 atomic regions from SNP 154304 to 154904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,976 DEBUG Processing 579/1108 atomic regions from SNP 173469 to 174069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,995 DEBUG Processing 167/229 atomic regions from SNP 50017 to 50618 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:12,009 DEBUG Processing 740/831 atomic regions from SNP 221995 to 222595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,081 DEBUG Processing 726/853 atomic regions from SNP 217600 to 218200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,133 DEBUG Processing 613/996 atomic regions from SNP 183759 to 184359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,209 DEBUG Processing 516/630 atomic regions from SNP 154604 to 155204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,234 DEBUG Processing 168/229 atomic regions from SNP 50318 to 50919 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:12,249 DEBUG Processing 741/831 atomic regions from SNP 222295 to 222895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,259 DEBUG Processing 580/1108 atomic regions from SNP 173769 to 174369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,310 DEBUG Processing 727/853 atomic regions from SNP 217900 to 218500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,390 DEBUG Processing 614/996 atomic regions from SNP 184059 to 184659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,472 DEBUG Processing 169/229 atomic regions from SNP 50619 to 51220 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:12,489 DEBUG Processing 517/630 atomic regions from SNP 154904 to 155504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,499 DEBUG Processing 742/831 atomic regions from SNP 222595 to 223195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,543 DEBUG Processing 581/1108 atomic regions from SNP 174069 to 174669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,566 DEBUG Processing 728/853 atomic regions from SNP 218200 to 218800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,650 DEBUG Processing 615/996 atomic regions from SNP 184359 to 184959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,713 DEBUG Processing 170/229 atomic regions from SNP 50920 to 51521 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:12,748 DEBUG Processing 743/831 atomic regions from SNP 222895 to 223495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,756 DEBUG Processing 518/630 atomic regions from SNP 155204 to 155804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,822 DEBUG Processing 582/1108 atomic regions from SNP 174369 to 174969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,829 DEBUG Processing 729/853 atomic regions from SNP 218500 to 219100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,911 DEBUG Processing 616/996 atomic regions from SNP 184659 to 185259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,948 DEBUG Processing 171/229 atomic regions from SNP 51221 to 51822 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:13,009 DEBUG Processing 744/831 atomic regions from SNP 223195 to 223795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,024 DEBUG Processing 519/630 atomic regions from SNP 155504 to 156104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,070 DEBUG Processing 730/853 atomic regions from SNP 218800 to 219400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,102 DEBUG Processing 583/1108 atomic regions from SNP 174669 to 175269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,174 DEBUG Processing 617/996 atomic regions from SNP 184959 to 185559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,182 DEBUG Processing 172/229 atomic regions from SNP 51522 to 52123 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:13,275 DEBUG Processing 745/831 atomic regions from SNP 223495 to 224095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,288 DEBUG Processing 520/630 atomic regions from SNP 155804 to 156404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,323 DEBUG Processing 731/853 atomic regions from SNP 219100 to 219700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,384 DEBUG Processing 584/1108 atomic regions from SNP 174969 to 175569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,420 DEBUG Processing 173/229 atomic regions from SNP 51823 to 52424 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:13,438 DEBUG Processing 618/996 atomic regions from SNP 185259 to 185859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,533 DEBUG Processing 521/630 atomic regions from SNP 156104 to 156704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,543 DEBUG Processing 746/831 atomic regions from SNP 223795 to 224395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,571 DEBUG Processing 732/853 atomic regions from SNP 219400 to 220000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,654 DEBUG Processing 174/229 atomic regions from SNP 52124 to 52725 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:13,667 DEBUG Processing 585/1108 atomic regions from SNP 175269 to 175869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,702 DEBUG Processing 619/996 atomic regions from SNP 185559 to 186159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,766 DEBUG Processing 522/630 atomic regions from SNP 156404 to 157004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,805 DEBUG Processing 747/831 atomic regions from SNP 224095 to 224695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,811 DEBUG Processing 733/853 atomic regions from SNP 219700 to 220300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,887 DEBUG Processing 175/229 atomic regions from SNP 52425 to 53026 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:13,946 DEBUG Processing 586/1108 atomic regions from SNP 175569 to 176169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,961 DEBUG Processing 620/996 atomic regions from SNP 185859 to 186459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,999 DEBUG Processing 523/630 atomic regions from SNP 156704 to 157304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,045 DEBUG Processing 734/853 atomic regions from SNP 220000 to 220600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,067 DEBUG Processing 748/831 atomic regions from SNP 224395 to 224995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,125 DEBUG Processing 176/229 atomic regions from SNP 52726 to 53327 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:14,220 DEBUG Processing 621/996 atomic regions from SNP 186159 to 186759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,244 DEBUG Processing 524/630 atomic regions from SNP 157004 to 157604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,253 DEBUG Processing 587/1108 atomic regions from SNP 175869 to 176469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,278 DEBUG Processing 735/853 atomic regions from SNP 220300 to 220900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,322 DEBUG Processing 749/831 atomic regions from SNP 224695 to 225295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,362 DEBUG Processing 177/229 atomic regions from SNP 53027 to 53628 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:14,475 DEBUG Processing 622/996 atomic regions from SNP 186459 to 187059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,486 DEBUG Processing 525/630 atomic regions from SNP 157304 to 157904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,515 DEBUG Processing 736/853 atomic regions from SNP 220600 to 221200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,537 DEBUG Processing 588/1108 atomic regions from SNP 176169 to 176769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,560 DEBUG Processing 750/831 atomic regions from SNP 224995 to 225595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,604 DEBUG Processing 178/229 atomic regions from SNP 53328 to 53929 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:14,730 DEBUG Processing 623/996 atomic regions from SNP 186759 to 187359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,732 DEBUG Processing 526/630 atomic regions from SNP 157604 to 158204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,755 DEBUG Processing 737/853 atomic regions from SNP 220900 to 221500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,810 DEBUG Processing 589/1108 atomic regions from SNP 176469 to 177069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,818 DEBUG Processing 751/831 atomic regions from SNP 225295 to 225895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,845 DEBUG Processing 179/229 atomic regions from SNP 53629 to 54230 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:14,983 DEBUG Processing 527/630 atomic regions from SNP 157904 to 158504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,985 DEBUG Processing 624/996 atomic regions from SNP 187059 to 187659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,996 DEBUG Processing 738/853 atomic regions from SNP 221200 to 221800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,058 DEBUG Processing 752/831 atomic regions from SNP 225595 to 226195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,084 DEBUG Processing 180/229 atomic regions from SNP 53930 to 54531 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:15,085 DEBUG Processing 590/1108 atomic regions from SNP 176769 to 177369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,236 DEBUG Processing 528/630 atomic regions from SNP 158204 to 158804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,238 DEBUG Processing 739/853 atomic regions from SNP 221500 to 222100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,244 DEBUG Processing 625/996 atomic regions from SNP 187359 to 187959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,300 DEBUG Processing 753/831 atomic regions from SNP 225895 to 226495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,322 DEBUG Processing 181/229 atomic regions from SNP 54231 to 54832 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:15,363 DEBUG Processing 591/1108 atomic regions from SNP 177069 to 177669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,479 DEBUG Processing 740/853 atomic regions from SNP 221800 to 222400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,491 DEBUG Processing 529/630 atomic regions from SNP 158504 to 159104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,510 DEBUG Processing 626/996 atomic regions from SNP 187659 to 188259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,545 DEBUG Processing 754/831 atomic regions from SNP 226195 to 226795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,562 DEBUG Processing 182/229 atomic regions from SNP 54532 to 55133 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:15,638 DEBUG Processing 592/1108 atomic regions from SNP 177369 to 177969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,719 DEBUG Processing 741/853 atomic regions from SNP 222100 to 222700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,742 DEBUG Processing 530/630 atomic regions from SNP 158804 to 159404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,778 DEBUG Processing 627/996 atomic regions from SNP 187959 to 188559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,792 DEBUG Processing 755/831 atomic regions from SNP 226495 to 227095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,803 DEBUG Processing 183/229 atomic regions from SNP 54833 to 55434 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:15,909 DEBUG Processing 593/1108 atomic regions from SNP 177669 to 178269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,953 DEBUG Processing 742/853 atomic regions from SNP 222400 to 223000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,985 DEBUG Processing 531/630 atomic regions from SNP 159104 to 159704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,038 DEBUG Processing 756/831 atomic regions from SNP 226795 to 227395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,046 DEBUG Processing 628/996 atomic regions from SNP 188259 to 188859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,050 DEBUG Processing 184/229 atomic regions from SNP 55134 to 55735 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:16,179 DEBUG Processing 594/1108 atomic regions from SNP 177969 to 178569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,187 DEBUG Processing 743/853 atomic regions from SNP 222700 to 223300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,245 DEBUG Processing 532/630 atomic regions from SNP 159404 to 160004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,299 DEBUG Processing 757/831 atomic regions from SNP 227095 to 227695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,301 DEBUG Processing 185/229 atomic regions from SNP 55435 to 56036 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:16,327 DEBUG Processing 629/996 atomic regions from SNP 188559 to 189159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,421 DEBUG Processing 744/853 atomic regions from SNP 223000 to 223600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,447 DEBUG Processing 595/1108 atomic regions from SNP 178269 to 178869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,482 DEBUG Processing 533/630 atomic regions from SNP 159704 to 160304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,543 DEBUG Processing 186/229 atomic regions from SNP 55736 to 56337 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:16,570 DEBUG Processing 758/831 atomic regions from SNP 227395 to 227995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,605 DEBUG Processing 630/996 atomic regions from SNP 188859 to 189459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,660 DEBUG Processing 745/853 atomic regions from SNP 223300 to 223900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,715 DEBUG Processing 534/630 atomic regions from SNP 160004 to 160604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,718 DEBUG Processing 596/1108 atomic regions from SNP 178569 to 179169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,774 DEBUG Processing 187/229 atomic regions from SNP 56037 to 56638 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:16,819 DEBUG Processing 759/831 atomic regions from SNP 227695 to 228295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,878 DEBUG Processing 631/996 atomic regions from SNP 189159 to 189759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,904 DEBUG Processing 746/853 atomic regions from SNP 223600 to 224200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,955 DEBUG Processing 535/630 atomic regions from SNP 160304 to 160904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,995 DEBUG Processing 597/1108 atomic regions from SNP 178869 to 179469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,001 DEBUG Processing 188/229 atomic regions from SNP 56338 to 56939 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:17,074 DEBUG Processing 760/831 atomic regions from SNP 227995 to 228595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,149 DEBUG Processing 747/853 atomic regions from SNP 223900 to 224500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,151 DEBUG Processing 632/996 atomic regions from SNP 189459 to 190059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,198 DEBUG Processing 536/630 atomic regions from SNP 160604 to 161204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,236 DEBUG Processing 189/229 atomic regions from SNP 56639 to 57240 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:17,275 DEBUG Processing 598/1108 atomic regions from SNP 179169 to 179769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,334 DEBUG Processing 761/831 atomic regions from SNP 228295 to 228895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,398 DEBUG Processing 748/853 atomic regions from SNP 224200 to 224800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,420 DEBUG Processing 633/996 atomic regions from SNP 189759 to 190359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,453 DEBUG Processing 537/630 atomic regions from SNP 160904 to 161504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,467 DEBUG Processing 190/229 atomic regions from SNP 56940 to 57541 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:17,552 DEBUG Processing 599/1108 atomic regions from SNP 179469 to 180069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,573 DEBUG Processing 762/831 atomic regions from SNP 228595 to 229195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,636 DEBUG Processing 749/853 atomic regions from SNP 224500 to 225100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,683 DEBUG Processing 634/996 atomic regions from SNP 190059 to 190659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,692 DEBUG Processing 191/229 atomic regions from SNP 57241 to 57842 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:17,715 DEBUG Processing 538/630 atomic regions from SNP 161204 to 161804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,815 DEBUG Processing 763/831 atomic regions from SNP 228895 to 229495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,830 DEBUG Processing 600/1108 atomic regions from SNP 179769 to 180369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,877 DEBUG Processing 750/853 atomic regions from SNP 224800 to 225400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,925 DEBUG Processing 192/229 atomic regions from SNP 57542 to 58143 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:17,945 DEBUG Processing 635/996 atomic regions from SNP 190359 to 190959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,958 DEBUG Processing 539/630 atomic regions from SNP 161504 to 162104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,068 DEBUG Processing 764/831 atomic regions from SNP 229195 to 229795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,110 DEBUG Processing 601/1108 atomic regions from SNP 180069 to 180669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,124 DEBUG Processing 751/853 atomic regions from SNP 225100 to 225700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,175 DEBUG Processing 193/229 atomic regions from SNP 57843 to 58444 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:18,208 DEBUG Processing 540/630 atomic regions from SNP 161804 to 162404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,218 DEBUG Processing 636/996 atomic regions from SNP 190659 to 191259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,328 DEBUG Processing 765/831 atomic regions from SNP 229495 to 230095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,367 DEBUG Processing 752/853 atomic regions from SNP 225400 to 226000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,388 DEBUG Processing 602/1108 atomic regions from SNP 180369 to 180969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,424 DEBUG Processing 194/229 atomic regions from SNP 58144 to 58745 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:18,454 DEBUG Processing 541/630 atomic regions from SNP 162104 to 162704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,480 DEBUG Processing 637/996 atomic regions from SNP 190959 to 191559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,598 DEBUG Processing 766/831 atomic regions from SNP 229795 to 230395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,605 DEBUG Processing 753/853 atomic regions from SNP 225700 to 226300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,663 DEBUG Processing 603/1108 atomic regions from SNP 180669 to 181269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,663 DEBUG Processing 195/229 atomic regions from SNP 58445 to 59046 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:18,693 DEBUG Processing 542/630 atomic regions from SNP 162404 to 163004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,742 DEBUG Processing 638/996 atomic regions from SNP 191259 to 191859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,847 DEBUG Processing 754/853 atomic regions from SNP 226000 to 226600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,856 DEBUG Processing 767/831 atomic regions from SNP 230095 to 230695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,901 DEBUG Processing 196/229 atomic regions from SNP 58746 to 59347 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:18,930 DEBUG Processing 543/630 atomic regions from SNP 162704 to 163304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,937 DEBUG Processing 604/1108 atomic regions from SNP 180969 to 181569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,999 DEBUG Processing 639/996 atomic regions from SNP 191559 to 192159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,086 DEBUG Processing 755/853 atomic regions from SNP 226300 to 226900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,096 DEBUG Processing 768/831 atomic regions from SNP 230395 to 230995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,139 DEBUG Processing 197/229 atomic regions from SNP 59047 to 59648 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:19,167 DEBUG Processing 544/630 atomic regions from SNP 163004 to 163604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,210 DEBUG Processing 605/1108 atomic regions from SNP 181269 to 181869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,258 DEBUG Processing 640/996 atomic regions from SNP 191859 to 192459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,327 DEBUG Processing 756/853 atomic regions from SNP 226600 to 227200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,337 DEBUG Processing 769/831 atomic regions from SNP 230695 to 231295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,382 DEBUG Processing 198/229 atomic regions from SNP 59348 to 59949 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:19,404 DEBUG Processing 545/630 atomic regions from SNP 163304 to 163904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,486 DEBUG Processing 606/1108 atomic regions from SNP 181569 to 182169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,513 DEBUG Processing 641/996 atomic regions from SNP 192159 to 192759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,567 DEBUG Processing 757/853 atomic regions from SNP 226900 to 227500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,572 DEBUG Processing 770/831 atomic regions from SNP 230995 to 231595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,625 DEBUG Processing 199/229 atomic regions from SNP 59649 to 60250 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:19,637 DEBUG Processing 546/630 atomic regions from SNP 163604 to 164204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,766 DEBUG Processing 607/1108 atomic regions from SNP 181869 to 182469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,771 DEBUG Processing 642/996 atomic regions from SNP 192459 to 193059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,814 DEBUG Processing 771/831 atomic regions from SNP 231295 to 231895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,814 DEBUG Processing 758/853 atomic regions from SNP 227200 to 227800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,869 DEBUG Processing 200/229 atomic regions from SNP 59950 to 60551 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:19,891 DEBUG Processing 547/630 atomic regions from SNP 163904 to 164504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,033 DEBUG Processing 643/996 atomic regions from SNP 192759 to 193359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,051 DEBUG Processing 608/1108 atomic regions from SNP 182169 to 182769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,061 DEBUG Processing 772/831 atomic regions from SNP 231595 to 232195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,061 DEBUG Processing 759/853 atomic regions from SNP 227500 to 228100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,108 DEBUG Processing 201/229 atomic regions from SNP 60251 to 60852 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:20,148 DEBUG Processing 548/630 atomic regions from SNP 164204 to 164804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,295 DEBUG Processing 644/996 atomic regions from SNP 193059 to 193659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,306 DEBUG Processing 773/831 atomic regions from SNP 231895 to 232495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,311 DEBUG Processing 760/853 atomic regions from SNP 227800 to 228400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,336 DEBUG Processing 609/1108 atomic regions from SNP 182469 to 183069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,347 DEBUG Processing 202/229 atomic regions from SNP 60552 to 61153 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:20,410 DEBUG Processing 549/630 atomic regions from SNP 164504 to 165104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,550 DEBUG Processing 774/831 atomic regions from SNP 232195 to 232795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,557 DEBUG Processing 761/853 atomic regions from SNP 228100 to 228700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,561 DEBUG Processing 645/996 atomic regions from SNP 193359 to 193959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,588 DEBUG Processing 203/229 atomic regions from SNP 60853 to 61454 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:20,615 DEBUG Processing 610/1108 atomic regions from SNP 182769 to 183369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,678 DEBUG Processing 550/630 atomic regions from SNP 164804 to 165404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,788 DEBUG Processing 775/831 atomic regions from SNP 232495 to 233095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,797 DEBUG Processing 762/853 atomic regions from SNP 228400 to 229000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,831 DEBUG Processing 204/229 atomic regions from SNP 61154 to 61755 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:20,832 DEBUG Processing 646/996 atomic regions from SNP 193659 to 194259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,890 DEBUG Processing 611/1108 atomic regions from SNP 183069 to 183669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,923 DEBUG Processing 551/630 atomic regions from SNP 165104 to 165704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,022 DEBUG Processing 776/831 atomic regions from SNP 232795 to 233395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,035 DEBUG Processing 763/853 atomic regions from SNP 228700 to 229300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,078 DEBUG Processing 205/229 atomic regions from SNP 61455 to 62056 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:21,105 DEBUG Processing 647/996 atomic regions from SNP 193959 to 194559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,168 DEBUG Processing 612/1108 atomic regions from SNP 183369 to 183969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,184 DEBUG Processing 552/630 atomic regions from SNP 165404 to 166004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,274 DEBUG Processing 777/831 atomic regions from SNP 233095 to 233695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,276 DEBUG Processing 764/853 atomic regions from SNP 229000 to 229600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,323 DEBUG Processing 206/229 atomic regions from SNP 61756 to 62357 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:21,382 DEBUG Processing 648/996 atomic regions from SNP 194259 to 194859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,448 DEBUG Processing 613/1108 atomic regions from SNP 183669 to 184269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,451 DEBUG Processing 553/630 atomic regions from SNP 165704 to 166304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,520 DEBUG Processing 765/853 atomic regions from SNP 229300 to 229900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,526 DEBUG Processing 778/831 atomic regions from SNP 233395 to 233995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,562 DEBUG Processing 207/229 atomic regions from SNP 62057 to 62658 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:21,658 DEBUG Processing 649/996 atomic regions from SNP 194559 to 195159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,721 DEBUG Processing 554/630 atomic regions from SNP 166004 to 166604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,726 DEBUG Processing 614/1108 atomic regions from SNP 183969 to 184569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,762 DEBUG Processing 766/853 atomic regions from SNP 229600 to 230200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,782 DEBUG Processing 779/831 atomic regions from SNP 233695 to 234295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,793 DEBUG Processing 208/229 atomic regions from SNP 62358 to 62959 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:21,928 DEBUG Processing 650/996 atomic regions from SNP 194859 to 195459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,978 DEBUG Processing 555/630 atomic regions from SNP 166304 to 166904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,003 DEBUG Processing 615/1108 atomic regions from SNP 184269 to 184869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,003 DEBUG Processing 767/853 atomic regions from SNP 229900 to 230500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,021 DEBUG Processing 209/229 atomic regions from SNP 62659 to 63260 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:22,050 DEBUG Processing 780/831 atomic regions from SNP 233995 to 234595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,196 DEBUG Processing 651/996 atomic regions from SNP 195159 to 195759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,217 DEBUG Processing 556/630 atomic regions from SNP 166604 to 167204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,243 DEBUG Processing 768/853 atomic regions from SNP 230200 to 230800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,258 DEBUG Processing 210/229 atomic regions from SNP 62960 to 63561 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:22,276 DEBUG Processing 616/1108 atomic regions from SNP 184569 to 185169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,299 DEBUG Processing 781/831 atomic regions from SNP 234295 to 234895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,453 DEBUG Processing 557/630 atomic regions from SNP 166904 to 167504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,464 DEBUG Processing 652/996 atomic regions from SNP 195459 to 196059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,481 DEBUG Processing 769/853 atomic regions from SNP 230500 to 231100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,499 DEBUG Processing 211/229 atomic regions from SNP 63261 to 63862 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:22,546 DEBUG Processing 782/831 atomic regions from SNP 234595 to 235195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,547 DEBUG Processing 617/1108 atomic regions from SNP 184869 to 185469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,698 DEBUG Processing 558/630 atomic regions from SNP 167204 to 167804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,718 DEBUG Processing 770/853 atomic regions from SNP 230800 to 231400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,729 DEBUG Processing 653/996 atomic regions from SNP 195759 to 196359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,736 DEBUG Processing 212/229 atomic regions from SNP 63562 to 64163 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:22,803 DEBUG Processing 783/831 atomic regions from SNP 234895 to 235495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,823 DEBUG Processing 618/1108 atomic regions from SNP 185169 to 185769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,940 DEBUG Processing 559/630 atomic regions from SNP 167504 to 168104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,957 DEBUG Processing 771/853 atomic regions from SNP 231100 to 231700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,975 DEBUG Processing 213/229 atomic regions from SNP 63863 to 64464 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:23,002 DEBUG Processing 654/996 atomic regions from SNP 196059 to 196659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,068 DEBUG Processing 784/831 atomic regions from SNP 235195 to 235795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,106 DEBUG Processing 619/1108 atomic regions from SNP 185469 to 186069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,186 DEBUG Processing 560/630 atomic regions from SNP 167804 to 168404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,194 DEBUG Processing 772/853 atomic regions from SNP 231400 to 232000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,207 DEBUG Processing 214/229 atomic regions from SNP 64164 to 64765 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:23,262 DEBUG Processing 655/996 atomic regions from SNP 196359 to 196959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,317 DEBUG Processing 785/831 atomic regions from SNP 235495 to 236095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,387 DEBUG Processing 620/1108 atomic regions from SNP 185769 to 186369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,433 DEBUG Processing 561/630 atomic regions from SNP 168104 to 168704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,437 DEBUG Processing 773/853 atomic regions from SNP 231700 to 232300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,444 DEBUG Processing 215/229 atomic regions from SNP 64465 to 65066 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:23,523 DEBUG Processing 656/996 atomic regions from SNP 196659 to 197259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,554 DEBUG Processing 786/831 atomic regions from SNP 235795 to 236395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,666 DEBUG Processing 621/1108 atomic regions from SNP 186069 to 186669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,682 DEBUG Processing 774/853 atomic regions from SNP 232000 to 232600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,682 DEBUG Processing 562/630 atomic regions from SNP 168404 to 169004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,688 DEBUG Processing 216/229 atomic regions from SNP 64766 to 65367 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:23,782 DEBUG Processing 657/996 atomic regions from SNP 196959 to 197559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,786 DEBUG Processing 787/831 atomic regions from SNP 236095 to 236695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,932 DEBUG Processing 775/853 atomic regions from SNP 232300 to 232900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,933 DEBUG Processing 563/630 atomic regions from SNP 168704 to 169304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,933 DEBUG Processing 217/229 atomic regions from SNP 65067 to 65668 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:23,954 DEBUG Processing 622/1108 atomic regions from SNP 186369 to 186969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,035 DEBUG Processing 788/831 atomic regions from SNP 236395 to 236995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,044 DEBUG Processing 658/996 atomic regions from SNP 197259 to 197859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,173 DEBUG Processing 218/229 atomic regions from SNP 65368 to 65969 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:24,176 DEBUG Processing 776/853 atomic regions from SNP 232600 to 233200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,178 DEBUG Processing 564/630 atomic regions from SNP 169004 to 169604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,232 DEBUG Processing 623/1108 atomic regions from SNP 186669 to 187269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,272 DEBUG Processing 789/831 atomic regions from SNP 236695 to 237295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,326 DEBUG Processing 659/996 atomic regions from SNP 197559 to 198159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,408 DEBUG Processing 219/229 atomic regions from SNP 65669 to 66270 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:24,422 DEBUG Processing 777/853 atomic regions from SNP 232900 to 233500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,422 DEBUG Processing 565/630 atomic regions from SNP 169304 to 169904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,513 DEBUG Processing 624/1108 atomic regions from SNP 186969 to 187569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,515 DEBUG Processing 790/831 atomic regions from SNP 236995 to 237595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,618 DEBUG Processing 660/996 atomic regions from SNP 197859 to 198459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,642 DEBUG Processing 220/229 atomic regions from SNP 65970 to 66571 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:24,665 DEBUG Processing 778/853 atomic regions from SNP 233200 to 233800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,666 DEBUG Processing 566/630 atomic regions from SNP 169604 to 170204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,756 DEBUG Processing 791/831 atomic regions from SNP 237295 to 237895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,789 DEBUG Processing 625/1108 atomic regions from SNP 187269 to 187869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,880 DEBUG Processing 221/229 atomic regions from SNP 66271 to 66872 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:24,897 DEBUG Processing 661/996 atomic regions from SNP 198159 to 198759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,910 DEBUG Processing 567/630 atomic regions from SNP 169904 to 170504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,910 DEBUG Processing 779/853 atomic regions from SNP 233500 to 234100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,002 DEBUG Processing 792/831 atomic regions from SNP 237595 to 238195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,059 DEBUG Processing 626/1108 atomic regions from SNP 187569 to 188169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,114 DEBUG Processing 222/229 atomic regions from SNP 66572 to 67173 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:25,150 DEBUG Processing 780/853 atomic regions from SNP 233800 to 234400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,153 DEBUG Processing 568/630 atomic regions from SNP 170204 to 170804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,185 DEBUG Processing 662/996 atomic regions from SNP 198459 to 199059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,255 DEBUG Processing 793/831 atomic regions from SNP 237895 to 238495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,334 DEBUG Processing 627/1108 atomic regions from SNP 187869 to 188469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,346 DEBUG Processing 223/229 atomic regions from SNP 66873 to 67474 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:25,390 DEBUG Processing 781/853 atomic regions from SNP 234100 to 234700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,393 DEBUG Processing 569/630 atomic regions from SNP 170504 to 171104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,477 DEBUG Processing 663/996 atomic regions from SNP 198759 to 199359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,515 DEBUG Processing 794/831 atomic regions from SNP 238195 to 238795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,577 DEBUG Processing 224/229 atomic regions from SNP 67174 to 67775 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:25,609 DEBUG Processing 628/1108 atomic regions from SNP 188169 to 188769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,631 DEBUG Processing 782/853 atomic regions from SNP 234400 to 235000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,634 DEBUG Processing 570/630 atomic regions from SNP 170804 to 171404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,752 DEBUG Processing 795/831 atomic regions from SNP 238495 to 239095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,752 DEBUG Processing 664/996 atomic regions from SNP 199059 to 199659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,808 DEBUG Processing 225/229 atomic regions from SNP 67475 to 68076 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:25,872 DEBUG Processing 783/853 atomic regions from SNP 234700 to 235300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,877 DEBUG Processing 571/630 atomic regions from SNP 171104 to 171704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,886 DEBUG Processing 629/1108 atomic regions from SNP 188469 to 189069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,990 DEBUG Processing 796/831 atomic regions from SNP 238795 to 239395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,025 DEBUG Processing 665/996 atomic regions from SNP 199359 to 199959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,047 DEBUG Processing 226/229 atomic regions from SNP 67776 to 68377 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:26,116 DEBUG Processing 784/853 atomic regions from SNP 235000 to 235600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,123 DEBUG Processing 572/630 atomic regions from SNP 171404 to 172004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,162 DEBUG Processing 630/1108 atomic regions from SNP 188769 to 189369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,227 DEBUG Processing 797/831 atomic regions from SNP 239095 to 239695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,292 DEBUG Processing 227/229 atomic regions from SNP 68077 to 68678 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:26,300 DEBUG Processing 666/996 atomic regions from SNP 199659 to 200259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,362 DEBUG Processing 785/853 atomic regions from SNP 235300 to 235900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,367 DEBUG Processing 573/630 atomic regions from SNP 171704 to 172304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,438 DEBUG Processing 631/1108 atomic regions from SNP 189069 to 189669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,462 DEBUG Processing 798/831 atomic regions from SNP 239395 to 239995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,540 DEBUG Processing 228/229 atomic regions from SNP 68378 to 68979 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:26,581 DEBUG Processing 667/996 atomic regions from SNP 199959 to 200559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,607 DEBUG Processing 786/853 atomic regions from SNP 235600 to 236200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,613 DEBUG Processing 574/630 atomic regions from SNP 172004 to 172604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,693 DEBUG Processing 799/831 atomic regions from SNP 239695 to 240295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,709 DEBUG Processing 632/1108 atomic regions from SNP 189369 to 189969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,781 DEBUG Processing 229/229 atomic regions from SNP 68679 to 69280 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:26,852 DEBUG Processing 787/853 atomic regions from SNP 235900 to 236500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,859 DEBUG Processing 575/630 atomic regions from SNP 172304 to 172904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,866 DEBUG Processing 668/996 atomic regions from SNP 200259 to 200859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,917 DEBUG Unique SNPs positions in subchromosome 5: 69281 2025-01-31 09:44:26,930 DEBUG Processing 800/831 atomic regions from SNP 239995 to 240595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,991 DEBUG Processing 633/1108 atomic regions from SNP 189669 to 190269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,001 DEBUG Subchromosome time: 77.17431796714664, subchromosome SNPs: 69281 2025-01-31 09:44:27,001 DEBUG Estimated BADs: [0.66, 3.29, 1.32, 0.66, 0.33, 0.00, 0.00, 1.32, 0.33, 0.66, 6.59, 0.66, 1.98, 0.66, 1.32, 0.33, 0.22, 0.66, 6.59] SNP counts: [3818, 809, 10549, 12070, 5024, 2, 52, 5821, 14462, 3957, 158, 34430, 2098, 42927, 8070, 26798, 12649, 56592, 40] SNP IDs counts: [3818, 809, 10549, 12070, 5024, 2, 52, 5821, 14462, 3957, 158, 34430, 2098, 42927, 8070, 26798, 12649, 56592, 40] Critical gap: 763136bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.54Mbp, 7.97Mbp, 14.21Mbp, 21.59Mbp, 26.91Mbp[1.11Mbp], 28.03Mbp[0.99Mbp], 30.07Mbp[1.07Mbp], 39.14Mbp, 48.14Mbp, 50.55Mbp, 50.64Mbp, 72.92Mbp, 74.22Mbp, 101.25Mbp, 105.98Mbp, 124.24Mbp[1.76Mbp], 134.05Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:44:27,001 DEBUG chrX time: 77.17491146177053 s 2025-01-31 09:44:27,098 DEBUG Processing 788/853 atomic regions from SNP 236200 to 236800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,107 DEBUG Processing 576/630 atomic regions from SNP 172604 to 173204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,136 DEBUG Processing 669/996 atomic regions from SNP 200559 to 201159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,168 DEBUG Processing 801/831 atomic regions from SNP 240295 to 240895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,184 DEBUG chrX: Fitting background model for 17 segments 2025-01-31 09:44:27,260 DEBUG Processing 634/1108 atomic regions from SNP 189969 to 190569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,346 DEBUG Processing 789/853 atomic regions from SNP 236500 to 237100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,351 DEBUG Processing 577/630 atomic regions from SNP 172904 to 173504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,410 DEBUG Processing 670/996 atomic regions from SNP 200859 to 201459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,418 DEBUG Processing 802/831 atomic regions from SNP 240595 to 241195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,534 DEBUG Processing 635/1108 atomic regions from SNP 190269 to 190869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,589 DEBUG Processing 790/853 atomic regions from SNP 236800 to 237400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,596 DEBUG Processing 578/630 atomic regions from SNP 173204 to 173804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,675 DEBUG Processing 803/831 atomic regions from SNP 240895 to 241495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,681 DEBUG Processing 671/996 atomic regions from SNP 201159 to 201759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,807 DEBUG Processing 636/1108 atomic regions from SNP 190569 to 191169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,828 DEBUG Processing 791/853 atomic regions from SNP 237100 to 237700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,840 DEBUG Processing 579/630 atomic regions from SNP 173504 to 174104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,923 DEBUG Processing 804/831 atomic regions from SNP 241195 to 241795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,962 DEBUG Processing 672/996 atomic regions from SNP 201459 to 202059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,072 DEBUG Processing 792/853 atomic regions from SNP 237400 to 238000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,085 DEBUG Processing 637/1108 atomic regions from SNP 190869 to 191469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,109 DEBUG Processing 580/630 atomic regions from SNP 173804 to 174404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,162 DEBUG Processing 805/831 atomic regions from SNP 241495 to 242095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,253 DEBUG Processing 673/996 atomic regions from SNP 201759 to 202359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,315 DEBUG Processing 793/853 atomic regions from SNP 237700 to 238300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,360 DEBUG Processing 638/1108 atomic regions from SNP 191169 to 191769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,367 DEBUG Processing 581/630 atomic regions from SNP 174104 to 174704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,395 DEBUG Processing 806/831 atomic regions from SNP 241795 to 242395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,531 DEBUG Processing 674/996 atomic regions from SNP 202059 to 202659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,559 DEBUG Processing 794/853 atomic regions from SNP 238000 to 238600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,609 DEBUG Processing 582/630 atomic regions from SNP 174404 to 175004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,635 DEBUG Processing 807/831 atomic regions from SNP 242095 to 242695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,636 DEBUG Processing 639/1108 atomic regions from SNP 191469 to 192069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,802 DEBUG Processing 795/853 atomic regions from SNP 238300 to 238900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,810 DEBUG Processing 675/996 atomic regions from SNP 202359 to 202959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,862 DEBUG Processing 583/630 atomic regions from SNP 174704 to 175304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,876 DEBUG Processing 808/831 atomic regions from SNP 242395 to 242995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,912 DEBUG Processing 640/1108 atomic regions from SNP 191769 to 192369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,043 DEBUG Processing 796/853 atomic regions from SNP 238600 to 239200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,107 DEBUG Processing 676/996 atomic regions from SNP 202659 to 203259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,116 DEBUG Processing 809/831 atomic regions from SNP 242695 to 243295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,121 DEBUG Processing 584/630 atomic regions from SNP 175004 to 175604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,190 DEBUG Processing 641/1108 atomic regions from SNP 192069 to 192669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,287 DEBUG Processing 797/853 atomic regions from SNP 238900 to 239500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,354 DEBUG Processing 810/831 atomic regions from SNP 242995 to 243595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,376 DEBUG Processing 585/630 atomic regions from SNP 175304 to 175904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,386 DEBUG Processing 677/996 atomic regions from SNP 202959 to 203559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,469 DEBUG Processing 642/1108 atomic regions from SNP 192369 to 192969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,535 DEBUG Processing 798/853 atomic regions from SNP 239200 to 239800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,596 DEBUG Processing 811/831 atomic regions from SNP 243295 to 243895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,622 DEBUG Processing 586/630 atomic regions from SNP 175604 to 176204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,649 DEBUG Processing 678/996 atomic regions from SNP 203259 to 203859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,747 DEBUG Processing 643/1108 atomic regions from SNP 192669 to 193269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,781 DEBUG Processing 799/853 atomic regions from SNP 239500 to 240100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,845 DEBUG Processing 812/831 atomic regions from SNP 243595 to 244195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,874 DEBUG Processing 587/630 atomic regions from SNP 175904 to 176504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,914 DEBUG Processing 679/996 atomic regions from SNP 203559 to 204159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,024 DEBUG Processing 644/1108 atomic regions from SNP 192969 to 193569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,026 DEBUG Processing 800/853 atomic regions from SNP 239800 to 240400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,088 DEBUG Processing 813/831 atomic regions from SNP 243895 to 244495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,132 DEBUG Processing 588/630 atomic regions from SNP 176204 to 176804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,190 DEBUG Processing 680/996 atomic regions from SNP 203859 to 204459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,267 DEBUG Processing 801/853 atomic regions from SNP 240100 to 240700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,304 DEBUG Processing 645/1108 atomic regions from SNP 193269 to 193869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,331 DEBUG Processing 814/831 atomic regions from SNP 244195 to 244795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,392 DEBUG Processing 589/630 atomic regions from SNP 176504 to 177104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,466 DEBUG Processing 681/996 atomic regions from SNP 204159 to 204759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,512 DEBUG Processing 802/853 atomic regions from SNP 240400 to 241000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,575 DEBUG Processing 815/831 atomic regions from SNP 244495 to 245095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,587 DEBUG Processing 646/1108 atomic regions from SNP 193569 to 194169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,644 DEBUG Processing 590/630 atomic regions from SNP 176804 to 177404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,735 DEBUG Processing 682/996 atomic regions from SNP 204459 to 205059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,756 DEBUG Processing 803/853 atomic regions from SNP 240700 to 241300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,823 DEBUG Processing 816/831 atomic regions from SNP 244795 to 245395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,869 DEBUG Processing 647/1108 atomic regions from SNP 193869 to 194469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,895 DEBUG Processing 591/630 atomic regions from SNP 177104 to 177704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,999 DEBUG Processing 683/996 atomic regions from SNP 204759 to 205359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,000 DEBUG Processing 804/853 atomic regions from SNP 241000 to 241600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,087 DEBUG Processing 817/831 atomic regions from SNP 245095 to 245695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,157 DEBUG Processing 592/630 atomic regions from SNP 177404 to 178004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,157 DEBUG Processing 648/1108 atomic regions from SNP 194169 to 194769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,232 DEBUG Processing 805/853 atomic regions from SNP 241300 to 241900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,257 DEBUG Processing 684/996 atomic regions from SNP 205059 to 205659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,343 DEBUG Processing 818/831 atomic regions from SNP 245395 to 245995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,465 DEBUG Processing 593/630 atomic regions from SNP 177704 to 178304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,482 DEBUG Processing 649/1108 atomic regions from SNP 194469 to 195069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,495 DEBUG Processing 806/853 atomic regions from SNP 241600 to 242200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,532 DEBUG Processing 685/996 atomic regions from SNP 205359 to 205959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,579 DEBUG Processing 819/831 atomic regions from SNP 245695 to 246295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,777 DEBUG Processing 594/630 atomic regions from SNP 178004 to 178604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,784 DEBUG Processing 807/853 atomic regions from SNP 241900 to 242500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,801 DEBUG Processing 650/1108 atomic regions from SNP 194769 to 195369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,839 DEBUG Processing 686/996 atomic regions from SNP 205659 to 206259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,860 DEBUG Processing 820/831 atomic regions from SNP 245995 to 246595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,033 DEBUG Processing 595/630 atomic regions from SNP 178304 to 178904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,063 DEBUG Processing 808/853 atomic regions from SNP 242200 to 242800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,107 DEBUG Processing 651/1108 atomic regions from SNP 195069 to 195669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,129 DEBUG Processing 821/831 atomic regions from SNP 246295 to 246895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,130 DEBUG Processing 687/996 atomic regions from SNP 205959 to 206559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,267 DEBUG Processing 596/630 atomic regions from SNP 178604 to 179204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,301 DEBUG Processing 809/853 atomic regions from SNP 242500 to 243100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,372 DEBUG Processing 822/831 atomic regions from SNP 246595 to 247195 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,394 DEBUG Processing 688/996 atomic regions from SNP 206259 to 206859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,404 DEBUG Processing 652/1108 atomic regions from SNP 195369 to 195969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,504 DEBUG Processing 597/630 atomic regions from SNP 178904 to 179504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,538 DEBUG Processing 810/853 atomic regions from SNP 242800 to 243400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,616 DEBUG Processing 823/831 atomic regions from SNP 246895 to 247495 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,661 DEBUG Processing 689/996 atomic regions from SNP 206559 to 207159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,694 DEBUG Processing 653/1108 atomic regions from SNP 195669 to 196269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,747 DEBUG Processing 598/630 atomic regions from SNP 179204 to 179804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,777 DEBUG Processing 811/853 atomic regions from SNP 243100 to 243700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,850 DEBUG Processing 824/831 atomic regions from SNP 247195 to 247795 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,926 DEBUG Processing 690/996 atomic regions from SNP 206859 to 207459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,976 DEBUG Processing 654/1108 atomic regions from SNP 195969 to 196569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,991 DEBUG Processing 599/630 atomic regions from SNP 179504 to 180104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,021 DEBUG Processing 812/853 atomic regions from SNP 243400 to 244000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,089 DEBUG Processing 825/831 atomic regions from SNP 247495 to 248095 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,195 DEBUG Processing 691/996 atomic regions from SNP 207159 to 207759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,240 DEBUG Processing 600/630 atomic regions from SNP 179804 to 180404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,258 DEBUG Processing 655/1108 atomic regions from SNP 196269 to 196869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,271 DEBUG Processing 813/853 atomic regions from SNP 243700 to 244300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,331 DEBUG Processing 826/831 atomic regions from SNP 247795 to 248395 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,466 DEBUG Processing 692/996 atomic regions from SNP 207459 to 208059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,492 DEBUG Processing 601/630 atomic regions from SNP 180104 to 180704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,527 DEBUG Processing 814/853 atomic regions from SNP 244000 to 244600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,550 DEBUG Processing 656/1108 atomic regions from SNP 196569 to 197169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,592 DEBUG Processing 827/831 atomic regions from SNP 248095 to 248695 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,742 DEBUG Processing 693/996 atomic regions from SNP 207759 to 208359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,747 DEBUG Processing 602/630 atomic regions from SNP 180404 to 181004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,821 DEBUG Processing 815/853 atomic regions from SNP 244300 to 244900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,868 DEBUG Processing 828/831 atomic regions from SNP 248395 to 248995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,877 DEBUG Processing 657/1108 atomic regions from SNP 196869 to 197469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,976 DEBUG Processing 603/630 atomic regions from SNP 180704 to 181304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,006 DEBUG Processing 694/996 atomic regions from SNP 208059 to 208659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,064 DEBUG Processing 816/853 atomic regions from SNP 244600 to 245200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,153 DEBUG Processing 829/831 atomic regions from SNP 248695 to 249295 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,191 DEBUG Processing 658/1108 atomic regions from SNP 197169 to 197769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,243 DEBUG Processing 604/630 atomic regions from SNP 181004 to 181604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,283 DEBUG Processing 695/996 atomic regions from SNP 208359 to 208959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,302 DEBUG Processing 817/853 atomic regions from SNP 244900 to 245500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,397 DEBUG Processing 830/831 atomic regions from SNP 248995 to 249595 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,496 DEBUG Processing 659/1108 atomic regions from SNP 197469 to 198069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,515 DEBUG Processing 605/630 atomic regions from SNP 181304 to 181904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,546 DEBUG Processing 818/853 atomic regions from SNP 245200 to 245800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,563 DEBUG Processing 696/996 atomic regions from SNP 208659 to 209259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,643 DEBUG Processing 831/831 atomic regions from SNP 249295 to 249895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,775 DEBUG Unique SNPs positions in subchromosome 1: 249896 2025-01-31 09:44:34,781 DEBUG Processing 606/630 atomic regions from SNP 181604 to 182204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,790 DEBUG Processing 660/1108 atomic regions from SNP 197769 to 198369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,796 DEBUG Processing 819/853 atomic regions from SNP 245500 to 246100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,844 DEBUG Processing 697/996 atomic regions from SNP 208959 to 209559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,054 DEBUG Processing 820/853 atomic regions from SNP 245800 to 246400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,069 DEBUG Processing 607/630 atomic regions from SNP 181904 to 182504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,081 DEBUG Processing 661/1108 atomic regions from SNP 198069 to 198669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,149 DEBUG Processing 698/996 atomic regions from SNP 209259 to 209859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,295 DEBUG Processing 821/853 atomic regions from SNP 246100 to 246700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,311 DEBUG Processing 608/630 atomic regions from SNP 182204 to 182804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,368 DEBUG Processing 662/1108 atomic regions from SNP 198369 to 198969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,426 DEBUG Processing 699/996 atomic regions from SNP 209559 to 210159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,536 DEBUG Processing 822/853 atomic regions from SNP 246400 to 247000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,553 DEBUG Processing 609/630 atomic regions from SNP 182504 to 183104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,673 DEBUG Processing 663/1108 atomic regions from SNP 198669 to 199269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,699 DEBUG Processing 700/996 atomic regions from SNP 209859 to 210459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,779 DEBUG Processing 823/853 atomic regions from SNP 246700 to 247300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,793 DEBUG Processing 610/630 atomic regions from SNP 182804 to 183404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,956 DEBUG Processing 664/1108 atomic regions from SNP 198969 to 199569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,971 DEBUG Processing 701/996 atomic regions from SNP 210159 to 210759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,018 DEBUG Processing 824/853 atomic regions from SNP 247000 to 247600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,038 DEBUG Processing 611/630 atomic regions from SNP 183104 to 183704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,258 DEBUG Processing 665/1108 atomic regions from SNP 199269 to 199869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,272 DEBUG Processing 825/853 atomic regions from SNP 247300 to 247900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,272 DEBUG Processing 702/996 atomic regions from SNP 210459 to 211059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,303 DEBUG Processing 612/630 atomic regions from SNP 183404 to 184004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,521 DEBUG Processing 826/853 atomic regions from SNP 247600 to 248200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,546 DEBUG Processing 666/1108 atomic regions from SNP 199569 to 200169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,554 DEBUG Processing 613/630 atomic regions from SNP 183704 to 184304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,557 DEBUG Processing 703/996 atomic regions from SNP 210759 to 211359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,782 DEBUG Processing 827/853 atomic regions from SNP 247900 to 248500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,832 DEBUG Processing 614/630 atomic regions from SNP 184004 to 184604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,858 DEBUG Processing 667/1108 atomic regions from SNP 199869 to 200469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,861 DEBUG Processing 704/996 atomic regions from SNP 211059 to 211659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,022 DEBUG Processing 828/853 atomic regions from SNP 248200 to 248800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,077 DEBUG Processing 615/630 atomic regions from SNP 184304 to 184904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,137 DEBUG Processing 705/996 atomic regions from SNP 211359 to 211959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,137 DEBUG Processing 668/1108 atomic regions from SNP 200169 to 200769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,281 DEBUG Processing 829/853 atomic regions from SNP 248500 to 249100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,328 DEBUG Processing 616/630 atomic regions from SNP 184604 to 185204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,422 DEBUG Processing 706/996 atomic regions from SNP 211659 to 212259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,423 DEBUG Processing 669/1108 atomic regions from SNP 200469 to 201069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,554 DEBUG Processing 830/853 atomic regions from SNP 248800 to 249400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,601 DEBUG Processing 617/630 atomic regions from SNP 184904 to 185504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,695 DEBUG Processing 707/996 atomic regions from SNP 211959 to 212559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,697 DEBUG Processing 670/1108 atomic regions from SNP 200769 to 201369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,796 DEBUG Processing 831/853 atomic regions from SNP 249100 to 249700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,869 DEBUG Processing 618/630 atomic regions from SNP 185204 to 185804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,967 DEBUG Processing 708/996 atomic regions from SNP 212259 to 212859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,972 DEBUG Processing 671/1108 atomic regions from SNP 201069 to 201669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,038 DEBUG Processing 832/853 atomic regions from SNP 249400 to 250000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,121 DEBUG Processing 619/630 atomic regions from SNP 185504 to 186104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,245 DEBUG Processing 709/996 atomic regions from SNP 212559 to 213159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,249 DEBUG Processing 672/1108 atomic regions from SNP 201369 to 201969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,283 DEBUG Processing 833/853 atomic regions from SNP 249700 to 250300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,362 DEBUG Processing 620/630 atomic regions from SNP 185804 to 186404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,523 DEBUG Processing 834/853 atomic regions from SNP 250000 to 250600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,523 DEBUG Processing 673/1108 atomic regions from SNP 201669 to 202269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,529 DEBUG Processing 710/996 atomic regions from SNP 212859 to 213459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,603 DEBUG Processing 621/630 atomic regions from SNP 186104 to 186704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,761 DEBUG Processing 835/853 atomic regions from SNP 250300 to 250900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,798 DEBUG Processing 674/1108 atomic regions from SNP 201969 to 202569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,803 DEBUG Processing 711/996 atomic regions from SNP 213159 to 213759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,842 DEBUG Processing 622/630 atomic regions from SNP 186404 to 187004 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,997 DEBUG Processing 836/853 atomic regions from SNP 250600 to 251200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,072 DEBUG Processing 675/1108 atomic regions from SNP 202269 to 202869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,073 DEBUG Processing 712/996 atomic regions from SNP 213459 to 214059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,098 DEBUG Processing 623/630 atomic regions from SNP 186704 to 187304 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,234 DEBUG Processing 837/853 atomic regions from SNP 250900 to 251500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,340 DEBUG Processing 713/996 atomic regions from SNP 213759 to 214359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,342 DEBUG Processing 676/1108 atomic regions from SNP 202569 to 203169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,362 DEBUG Processing 624/630 atomic regions from SNP 187004 to 187604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,478 DEBUG Processing 838/853 atomic regions from SNP 251200 to 251800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,611 DEBUG Processing 677/1108 atomic regions from SNP 202869 to 203469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,613 DEBUG Processing 714/996 atomic regions from SNP 214059 to 214659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,615 DEBUG Processing 625/630 atomic regions from SNP 187304 to 187904 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,718 DEBUG Processing 839/853 atomic regions from SNP 251500 to 252100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,857 DEBUG Processing 626/630 atomic regions from SNP 187604 to 188204 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,875 DEBUG Processing 715/996 atomic regions from SNP 214359 to 214959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,886 DEBUG Processing 678/1108 atomic regions from SNP 203169 to 203769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,956 DEBUG Processing 840/853 atomic regions from SNP 251800 to 252400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,108 DEBUG Processing 627/630 atomic regions from SNP 187904 to 188504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,145 DEBUG Processing 716/996 atomic regions from SNP 214659 to 215259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,162 DEBUG Processing 679/1108 atomic regions from SNP 203469 to 204069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,196 DEBUG Processing 841/853 atomic regions from SNP 252100 to 252700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,378 DEBUG Processing 628/630 atomic regions from SNP 188204 to 188804 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,429 DEBUG Processing 717/996 atomic regions from SNP 214959 to 215559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,439 DEBUG Processing 842/853 atomic regions from SNP 252400 to 253000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,444 DEBUG Processing 680/1108 atomic regions from SNP 203769 to 204369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,649 DEBUG Processing 629/630 atomic regions from SNP 188504 to 189104 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,687 DEBUG Processing 843/853 atomic regions from SNP 252700 to 253300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,712 DEBUG Processing 718/996 atomic regions from SNP 215259 to 215859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,724 DEBUG Processing 681/1108 atomic regions from SNP 204069 to 204669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,905 DEBUG Processing 630/630 atomic regions from SNP 188804 to 189404 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,924 DEBUG Processing 844/853 atomic regions from SNP 253000 to 253600 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,989 DEBUG Processing 719/996 atomic regions from SNP 215559 to 216159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,999 DEBUG Processing 682/1108 atomic regions from SNP 204369 to 204969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,052 DEBUG Unique SNPs positions in subchromosome 2: 189405 2025-01-31 09:44:41,162 DEBUG Processing 845/853 atomic regions from SNP 253300 to 253900 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,285 DEBUG Processing 720/996 atomic regions from SNP 215859 to 216459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,295 DEBUG Processing 683/1108 atomic regions from SNP 204669 to 205269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,400 DEBUG Processing 846/853 atomic regions from SNP 253600 to 254200 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,577 DEBUG Processing 721/996 atomic regions from SNP 216159 to 216759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,578 DEBUG Processing 684/1108 atomic regions from SNP 204969 to 205569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,643 DEBUG Processing 847/853 atomic regions from SNP 253900 to 254500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,854 DEBUG Processing 685/1108 atomic regions from SNP 205269 to 205869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,868 DEBUG Processing 722/996 atomic regions from SNP 216459 to 217059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,891 DEBUG Processing 848/853 atomic regions from SNP 254200 to 254800 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,127 DEBUG Processing 686/1108 atomic regions from SNP 205569 to 206169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,134 DEBUG Processing 849/853 atomic regions from SNP 254500 to 255100 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,148 DEBUG Processing 723/996 atomic regions from SNP 216759 to 217359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,373 DEBUG Processing 850/853 atomic regions from SNP 254800 to 255400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,403 DEBUG Processing 687/1108 atomic regions from SNP 205869 to 206469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,425 DEBUG Processing 724/996 atomic regions from SNP 217059 to 217659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,609 DEBUG Processing 851/853 atomic regions from SNP 255100 to 255700 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,682 DEBUG Processing 688/1108 atomic regions from SNP 206169 to 206769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,702 DEBUG Processing 725/996 atomic regions from SNP 217359 to 217959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,850 DEBUG Processing 852/853 atomic regions from SNP 255400 to 256000 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,966 DEBUG Processing 689/1108 atomic regions from SNP 206469 to 207069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,980 DEBUG Processing 726/996 atomic regions from SNP 217659 to 218259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,090 DEBUG Processing 853/853 atomic regions from SNP 255700 to 256300 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,232 DEBUG Unique SNPs positions in subchromosome 1: 256301 2025-01-31 09:44:43,246 DEBUG Processing 690/1108 atomic regions from SNP 206769 to 207369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,250 DEBUG Processing 727/996 atomic regions from SNP 217959 to 218559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,517 DEBUG Processing 691/1108 atomic regions from SNP 207069 to 207669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,530 DEBUG Processing 728/996 atomic regions from SNP 218259 to 218859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,784 DEBUG Processing 692/1108 atomic regions from SNP 207369 to 207969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,825 DEBUG Processing 729/996 atomic regions from SNP 218559 to 219159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,077 DEBUG Processing 693/1108 atomic regions from SNP 207669 to 208269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,113 DEBUG Processing 730/996 atomic regions from SNP 218859 to 219459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,354 DEBUG Processing 694/1108 atomic regions from SNP 207969 to 208569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,409 DEBUG Processing 731/996 atomic regions from SNP 219159 to 219759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,501 DEBUG Subchromosome time: 261.1406372562051, subchromosome SNPs: 249896 2025-01-31 09:44:44,502 DEBUG Estimated BADs: [0.37, 1.11, 5.57, 1.11, 5.57, 2.23, 1.11, 0.56, 1.11, 0.16, 1.11, 0.19, 1.11, 0.19, 0.56, 1.11, 4.45, 1.11, 3.34, 1.11, 5.57, 1.11, 3.34, 2.23] SNP counts: [26023, 6046, 1142, 9704, 1264, 10098, 5695, 18347, 7534, 11420, 9582, 4229, 12603, 7777, 13905, 34562, 3461, 8640, 9955, 7898, 726, 7349, 11933, 20003] SNP IDs counts: [26023, 6046, 1142, 9704, 1264, 10098, 5695, 18347, 7534, 11420, 9582, 4229, 12603, 7777, 13905, 34562, 3461, 8640, 9955, 7898, 726, 7349, 11933, 20003] Critical gap: 683503bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 20.88Mbp, 24.32Mbp, 24.93Mbp, 30.57Mbp, 31.24Mbp, 36.69Mbp, 39.87Mbp, 51.05Mbp, 55.22Mbp, 63.13Mbp, 68.48Mbp, 71.28Mbp, 78.39Mbp, 83.62Mbp, 92.07Mbp, 113.72Mbp, 115.54Mbp, 120.09Mbp, 125.40Mbp, 129.71Mbp, 130.14Mbp, 134.17Mbp, 140.68Mbp, 151.83Mbp] 2025-01-31 09:44:44,502 DEBUG chr5 time: 261.1412844732404 s 2025-01-31 09:44:44,634 DEBUG Processing 695/1108 atomic regions from SNP 208269 to 208869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,655 DEBUG chr5: Fitting background model for 24 segments 2025-01-31 09:44:44,674 DEBUG Processing 732/996 atomic regions from SNP 219459 to 220059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,911 DEBUG Processing 696/1108 atomic regions from SNP 208569 to 209169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,949 DEBUG Processing 733/996 atomic regions from SNP 219759 to 220359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,192 DEBUG Processing 697/1108 atomic regions from SNP 208869 to 209469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,240 DEBUG Processing 734/996 atomic regions from SNP 220059 to 220659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,468 DEBUG Processing 698/1108 atomic regions from SNP 209169 to 209769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,528 DEBUG Processing 735/996 atomic regions from SNP 220359 to 220959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,749 DEBUG Processing 699/1108 atomic regions from SNP 209469 to 210069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,794 DEBUG Processing 736/996 atomic regions from SNP 220659 to 221259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,034 DEBUG Processing 700/1108 atomic regions from SNP 209769 to 210369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,056 DEBUG Processing 737/996 atomic regions from SNP 220959 to 221559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,291 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:44:46,316 DEBUG Processing 738/996 atomic regions from SNP 221259 to 221859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,317 DEBUG Processing 701/1108 atomic regions from SNP 210069 to 210669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,583 DEBUG Processing 739/996 atomic regions from SNP 221559 to 222159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,604 DEBUG Processing 702/1108 atomic regions from SNP 210369 to 210969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,854 DEBUG Processing 740/996 atomic regions from SNP 221859 to 222459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,890 DEBUG Processing 703/1108 atomic regions from SNP 210669 to 211269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,116 DEBUG Subchromosome time: 207.02086015418172, subchromosome SNPs: 189405 2025-01-31 09:44:47,116 DEBUG Estimated BADs: [0.58, 1.16, 0.39, 1.16, 0.39, 3.47, 2.31, 0.29, 1.16, 0.29, 0.58, 2.31, 0.39, 2.31, 3.47, 1.16, 3.47] SNP counts: [8843, 13202, 25293, 3892, 8258, 3035, 11211, 5396, 18087, 24270, 45051, 7495, 6256, 29236, 19047, 7649, 15707] SNP IDs counts: [8843, 13202, 25293, 3892, 8258, 3035, 11211, 5396, 18087, 24270, 45051, 7495, 6256, 29236, 19047, 7649, 15707] Critical gap: 697797bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 8.64Mbp, 16.33Mbp, 32.51Mbp, 34.69Mbp, 40.13Mbp, 41.86Mbp[0.85Mbp], 48.82Mbp, 52.27Mbp, 64.12Mbp, 79.96Mbp, 106.49Mbp, 110.62Mbp, 115.04Mbp, 131.80Mbp, 141.78Mbp, 148.04Mbp, 156.51Mbp] 2025-01-31 09:44:47,116 DEBUG chr4 time: 207.02144562453032 s 2025-01-31 09:44:47,139 DEBUG Processing 741/996 atomic regions from SNP 222159 to 222759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,201 DEBUG Processing 704/1108 atomic regions from SNP 210969 to 211569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,285 DEBUG chr4: Fitting background model for 17 segments 2025-01-31 09:44:47,460 DEBUG Processing 742/996 atomic regions from SNP 222459 to 223059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,528 DEBUG Processing 705/1108 atomic regions from SNP 211269 to 211869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,770 DEBUG Processing 743/996 atomic regions from SNP 222759 to 223359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,895 DEBUG Subchromosome time: 263.49842062965035, subchromosome SNPs: 256301 2025-01-31 09:44:47,895 DEBUG Estimated BADs: [0.60, 2.38, 0.60, 1.19, 0.60, 5.95, 1.19, 0.60, 2.38, 8.33, 1.19, 8.33, 3.57, 0.60, 3.57, 1.19, 2.38, 1.19, 0.60] SNP counts: [24799, 1514, 17376, 10328, 19670, 1513, 29403, 24150, 6875, 5001, 5973, 3898, 21961, 10852, 1686, 7957, 17387, 15721, 30237] SNP IDs counts: [24799, 1514, 17376, 10328, 19670, 1513, 29403, 24150, 6875, 5001, 5973, 3898, 21961, 10852, 1686, 7957, 17387, 15721, 30237] Critical gap: 712169bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 19.15Mbp, 20.00Mbp, 30.58Mbp, 36.46Mbp, 50.74Mbp, 51.60Mbp, 68.98Mbp, 84.01Mbp, 87.72Mbp, 90.42Mbp, 94.47Mbp, 96.66Mbp, 108.83Mbp, 115.71Mbp, 116.61Mbp, 121.15Mbp, 130.74Mbp, 139.99Mbp, 160.04Mbp] 2025-01-31 09:44:47,895 DEBUG chr3 time: 263.49896804615855 s 2025-01-31 09:44:47,904 DEBUG Processing 706/1108 atomic regions from SNP 211569 to 212169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,055 DEBUG Processing 744/996 atomic regions from SNP 223059 to 223659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,109 DEBUG chr3: Fitting background model for 19 segments 2025-01-31 09:44:48,219 DEBUG Processing 707/1108 atomic regions from SNP 211869 to 212469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,333 DEBUG Processing 745/996 atomic regions from SNP 223359 to 223959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,534 DEBUG Processing 708/1108 atomic regions from SNP 212169 to 212769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,599 DEBUG Processing 746/996 atomic regions from SNP 223659 to 224259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,855 DEBUG Processing 709/1108 atomic regions from SNP 212469 to 213069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,890 DEBUG Processing 747/996 atomic regions from SNP 223959 to 224559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,174 DEBUG Processing 710/1108 atomic regions from SNP 212769 to 213369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,188 DEBUG Processing 748/996 atomic regions from SNP 224259 to 224859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,495 DEBUG Processing 749/996 atomic regions from SNP 224559 to 225159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,501 DEBUG Processing 711/1108 atomic regions from SNP 213069 to 213669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,804 DEBUG Processing 750/996 atomic regions from SNP 224859 to 225459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,843 DEBUG Processing 712/1108 atomic regions from SNP 213369 to 213969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,133 DEBUG Processing 751/996 atomic regions from SNP 225159 to 225759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,172 DEBUG Processing 713/1108 atomic regions from SNP 213669 to 214269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,498 DEBUG Processing 752/996 atomic regions from SNP 225459 to 226059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,563 DEBUG Processing 714/1108 atomic regions from SNP 213969 to 214569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,921 DEBUG Processing 753/996 atomic regions from SNP 225759 to 226359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,970 DEBUG Processing 715/1108 atomic regions from SNP 214269 to 214869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,287 DEBUG Processing 754/996 atomic regions from SNP 226059 to 226659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,334 DEBUG Processing 716/1108 atomic regions from SNP 214569 to 215169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,616 DEBUG Processing 755/996 atomic regions from SNP 226359 to 226959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,678 DEBUG Processing 717/1108 atomic regions from SNP 214869 to 215469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,889 DEBUG Processing 756/996 atomic regions from SNP 226659 to 227259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,987 DEBUG Processing 718/1108 atomic regions from SNP 215169 to 215769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,202 DEBUG Processing 757/996 atomic regions from SNP 226959 to 227559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,278 DEBUG Processing 719/1108 atomic regions from SNP 215469 to 216069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,485 DEBUG Processing 758/996 atomic regions from SNP 227259 to 227859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,580 DEBUG Processing 720/1108 atomic regions from SNP 215769 to 216369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,806 DEBUG Processing 759/996 atomic regions from SNP 227559 to 228159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,916 DEBUG Processing 721/1108 atomic regions from SNP 216069 to 216669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,163 DEBUG Processing 760/996 atomic regions from SNP 227859 to 228459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,281 DEBUG Processing 722/1108 atomic regions from SNP 216369 to 216969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,516 DEBUG Processing 761/996 atomic regions from SNP 228159 to 228759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,695 DEBUG Processing 723/1108 atomic regions from SNP 216669 to 217269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,841 DEBUG Processing 762/996 atomic regions from SNP 228459 to 229059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,985 DEBUG Processing 724/1108 atomic regions from SNP 216969 to 217569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,233 DEBUG Processing 763/996 atomic regions from SNP 228759 to 229359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,358 DEBUG Processing 725/1108 atomic regions from SNP 217269 to 217869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,601 DEBUG Processing 764/996 atomic regions from SNP 229059 to 229659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,759 DEBUG Processing 726/1108 atomic regions from SNP 217569 to 218169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,887 DEBUG Processing 765/996 atomic regions from SNP 229359 to 229959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,060 DEBUG Processing 727/1108 atomic regions from SNP 217869 to 218469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,161 DEBUG Processing 766/996 atomic regions from SNP 229659 to 230259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,363 DEBUG Processing 728/1108 atomic regions from SNP 218169 to 218769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,425 DEBUG Processing 767/996 atomic regions from SNP 229959 to 230559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,670 DEBUG Processing 729/1108 atomic regions from SNP 218469 to 219069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,695 DEBUG Processing 768/996 atomic regions from SNP 230259 to 230859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,958 DEBUG Processing 730/1108 atomic regions from SNP 218769 to 219369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,967 DEBUG Processing 769/996 atomic regions from SNP 230559 to 231159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,240 DEBUG Processing 770/996 atomic regions from SNP 230859 to 231459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,253 DEBUG Processing 731/1108 atomic regions from SNP 219069 to 219669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,520 DEBUG Processing 771/996 atomic regions from SNP 231159 to 231759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,545 DEBUG Processing 732/1108 atomic regions from SNP 219369 to 219969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,797 DEBUG Processing 772/996 atomic regions from SNP 231459 to 232059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,842 DEBUG Processing 733/1108 atomic regions from SNP 219669 to 220269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,067 DEBUG Processing 773/996 atomic regions from SNP 231759 to 232359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,133 DEBUG Processing 734/1108 atomic regions from SNP 219969 to 220569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,331 DEBUG Processing 774/996 atomic regions from SNP 232059 to 232659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,423 DEBUG Processing 735/1108 atomic regions from SNP 220269 to 220869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,596 DEBUG Processing 775/996 atomic regions from SNP 232359 to 232959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,732 DEBUG Processing 736/1108 atomic regions from SNP 220569 to 221169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,860 DEBUG Processing 776/996 atomic regions from SNP 232659 to 233259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,039 DEBUG Processing 737/1108 atomic regions from SNP 220869 to 221469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,126 DEBUG Processing 777/996 atomic regions from SNP 232959 to 233559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,330 DEBUG Processing 738/1108 atomic regions from SNP 221169 to 221769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,397 DEBUG Processing 778/996 atomic regions from SNP 233259 to 233859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,624 DEBUG Processing 739/1108 atomic regions from SNP 221469 to 222069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,668 DEBUG Processing 779/996 atomic regions from SNP 233559 to 234159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,924 DEBUG Processing 740/1108 atomic regions from SNP 221769 to 222369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,938 DEBUG Processing 780/996 atomic regions from SNP 233859 to 234459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,202 DEBUG Processing 781/996 atomic regions from SNP 234159 to 234759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,241 DEBUG Processing 741/1108 atomic regions from SNP 222069 to 222669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,469 DEBUG Processing 782/996 atomic regions from SNP 234459 to 235059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,535 DEBUG Processing 742/1108 atomic regions from SNP 222369 to 222969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,738 DEBUG Processing 783/996 atomic regions from SNP 234759 to 235359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,819 DEBUG Processing 743/1108 atomic regions from SNP 222669 to 223269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,011 DEBUG Processing 784/996 atomic regions from SNP 235059 to 235659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,125 DEBUG Processing 744/1108 atomic regions from SNP 222969 to 223569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,278 DEBUG Processing 785/996 atomic regions from SNP 235359 to 235959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,443 DEBUG Processing 745/1108 atomic regions from SNP 223269 to 223869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,542 DEBUG Processing 786/996 atomic regions from SNP 235659 to 236259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,763 DEBUG Processing 746/1108 atomic regions from SNP 223569 to 224169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,803 DEBUG Processing 787/996 atomic regions from SNP 235959 to 236559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,082 DEBUG Processing 788/996 atomic regions from SNP 236259 to 236859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,086 DEBUG Processing 747/1108 atomic regions from SNP 223869 to 224469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,353 DEBUG Processing 789/996 atomic regions from SNP 236559 to 237159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,408 DEBUG Processing 748/1108 atomic regions from SNP 224169 to 224769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,624 DEBUG Processing 790/996 atomic regions from SNP 236859 to 237459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,733 DEBUG Processing 749/1108 atomic regions from SNP 224469 to 225069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,893 DEBUG Processing 791/996 atomic regions from SNP 237159 to 237759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,055 DEBUG Processing 750/1108 atomic regions from SNP 224769 to 225369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,161 DEBUG Processing 792/996 atomic regions from SNP 237459 to 238059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,350 DEBUG Processing 751/1108 atomic regions from SNP 225069 to 225669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,428 DEBUG Processing 793/996 atomic regions from SNP 237759 to 238359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,645 DEBUG Processing 752/1108 atomic regions from SNP 225369 to 225969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,695 DEBUG Processing 794/996 atomic regions from SNP 238059 to 238659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,951 DEBUG Processing 753/1108 atomic regions from SNP 225669 to 226269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,982 DEBUG Processing 795/996 atomic regions from SNP 238359 to 238959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,316 DEBUG Processing 754/1108 atomic regions from SNP 225969 to 226569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,318 DEBUG Processing 796/996 atomic regions from SNP 238659 to 239259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,716 DEBUG Processing 797/996 atomic regions from SNP 238959 to 239559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,743 DEBUG Processing 755/1108 atomic regions from SNP 226269 to 226869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,125 DEBUG Processing 798/996 atomic regions from SNP 239259 to 239859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,186 DEBUG Processing 756/1108 atomic regions from SNP 226569 to 227169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,508 DEBUG Processing 799/996 atomic regions from SNP 239559 to 240159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,642 DEBUG Processing 757/1108 atomic regions from SNP 226869 to 227469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,844 DEBUG Processing 800/996 atomic regions from SNP 239859 to 240459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,115 DEBUG Processing 758/1108 atomic regions from SNP 227169 to 227769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,226 DEBUG Processing 801/996 atomic regions from SNP 240159 to 240759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,287 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:45:05,289 DEBUG chr6: Signal quantile: 0.994. signal threshold: 9. Best RMSEA: 0.022 2025-01-31 09:45:05,475 DEBUG Processing 759/1108 atomic regions from SNP 227469 to 228069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,518 DEBUG Processing 802/996 atomic regions from SNP 240459 to 241059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,792 DEBUG Processing 760/1108 atomic regions from SNP 227769 to 228369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,800 DEBUG Processing 803/996 atomic regions from SNP 240759 to 241359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,104 DEBUG Processing 804/996 atomic regions from SNP 241059 to 241659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,120 DEBUG Processing 761/1108 atomic regions from SNP 228069 to 228669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,445 DEBUG Processing 805/996 atomic regions from SNP 241359 to 241959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,492 DEBUG Processing 762/1108 atomic regions from SNP 228369 to 228969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,804 DEBUG Processing 806/996 atomic regions from SNP 241659 to 242259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,883 DEBUG Processing 763/1108 atomic regions from SNP 228669 to 229269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,158 DEBUG Processing 807/996 atomic regions from SNP 241959 to 242559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,307 DEBUG Processing 764/1108 atomic regions from SNP 228969 to 229569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,502 DEBUG Processing 808/996 atomic regions from SNP 242259 to 242859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,737 DEBUG Processing 765/1108 atomic regions from SNP 229269 to 229869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,794 DEBUG Processing 809/996 atomic regions from SNP 242559 to 243159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,046 DEBUG Processing 766/1108 atomic regions from SNP 229569 to 230169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,064 DEBUG Processing 810/996 atomic regions from SNP 242859 to 243459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,332 DEBUG Processing 767/1108 atomic regions from SNP 229869 to 230469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,340 DEBUG Processing 811/996 atomic regions from SNP 243159 to 243759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,619 DEBUG Processing 812/996 atomic regions from SNP 243459 to 244059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,623 DEBUG Processing 768/1108 atomic regions from SNP 230169 to 230769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,903 DEBUG Processing 813/996 atomic regions from SNP 243759 to 244359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,933 DEBUG Processing 769/1108 atomic regions from SNP 230469 to 231069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,986 DEBUG chr6 total SNP count: 248321 2025-01-31 09:45:08,986 DEBUG chr6 length: 149736546 2025-01-31 09:45:08,986 DEBUG ----------------------------------------- 2025-01-31 09:45:08,986 INFO Processing SNPs in chr6 2025-01-31 09:45:09,177 DEBUG Processing 814/996 atomic regions from SNP 244059 to 244659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,233 DEBUG Processing 770/1108 atomic regions from SNP 230769 to 231369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,239 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 248321)] 2025-01-31 09:45:09,412 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:09,449 DEBUG Processing 815/996 atomic regions from SNP 244359 to 244959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,533 DEBUG Processing 771/1108 atomic regions from SNP 231069 to 231669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,716 DEBUG Processing 816/996 atomic regions from SNP 244659 to 245259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,826 DEBUG Processing 772/1108 atomic regions from SNP 231369 to 231969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,985 DEBUG Processing 817/996 atomic regions from SNP 244959 to 245559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,121 DEBUG Processing 773/1108 atomic regions from SNP 231669 to 232269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,258 DEBUG Processing 818/996 atomic regions from SNP 245259 to 245859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,401 DEBUG Processing 774/1108 atomic regions from SNP 231969 to 232569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,520 DEBUG Processing 819/996 atomic regions from SNP 245559 to 246159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,681 DEBUG Processing 775/1108 atomic regions from SNP 232269 to 232869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,784 DEBUG Processing 820/996 atomic regions from SNP 245859 to 246459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,957 DEBUG Processing 776/1108 atomic regions from SNP 232569 to 233169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,055 DEBUG Processing 821/996 atomic regions from SNP 246159 to 246759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,232 DEBUG Processing 777/1108 atomic regions from SNP 232869 to 233469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,319 DEBUG Processing 822/996 atomic regions from SNP 246459 to 247059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,509 DEBUG Processing 778/1108 atomic regions from SNP 233169 to 233769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,594 DEBUG Processing 823/996 atomic regions from SNP 246759 to 247359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,785 DEBUG Processing 779/1108 atomic regions from SNP 233469 to 234069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,862 DEBUG Processing 824/996 atomic regions from SNP 247059 to 247659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,064 DEBUG Processing 780/1108 atomic regions from SNP 233769 to 234369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,125 DEBUG Processing 825/996 atomic regions from SNP 247359 to 247959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,343 DEBUG Processing 781/1108 atomic regions from SNP 234069 to 234669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,387 DEBUG Processing 826/996 atomic regions from SNP 247659 to 248259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,530 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:45:12,625 DEBUG Processing 782/1108 atomic regions from SNP 234369 to 234969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,646 DEBUG Processing 827/996 atomic regions from SNP 247959 to 248559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,908 DEBUG Processing 783/1108 atomic regions from SNP 234669 to 235269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,910 DEBUG Processing 828/996 atomic regions from SNP 248259 to 248859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,174 DEBUG Processing 829/996 atomic regions from SNP 248559 to 249159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,188 DEBUG Processing 784/1108 atomic regions from SNP 234969 to 235569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,442 DEBUG Processing 830/996 atomic regions from SNP 248859 to 249459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,460 DEBUG Processing 785/1108 atomic regions from SNP 235269 to 235869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,744 DEBUG Processing 831/996 atomic regions from SNP 249159 to 249759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,771 DEBUG Processing 786/1108 atomic regions from SNP 235569 to 236169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,037 DEBUG Processing 832/996 atomic regions from SNP 249459 to 250059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,055 DEBUG Processing 787/1108 atomic regions from SNP 235869 to 236469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,319 DEBUG Processing 833/996 atomic regions from SNP 249759 to 250359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,331 DEBUG Processing 788/1108 atomic regions from SNP 236169 to 236769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,592 DEBUG Processing 834/996 atomic regions from SNP 250059 to 250659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,611 DEBUG Processing 789/1108 atomic regions from SNP 236469 to 237069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,856 DEBUG Processing 835/996 atomic regions from SNP 250359 to 250959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,889 DEBUG Processing 790/1108 atomic regions from SNP 236769 to 237369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,120 DEBUG Processing 836/996 atomic regions from SNP 250659 to 251259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,171 DEBUG Processing 791/1108 atomic regions from SNP 237069 to 237669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,384 DEBUG Processing 837/996 atomic regions from SNP 250959 to 251559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,451 DEBUG Processing 792/1108 atomic regions from SNP 237369 to 237969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,640 DEBUG Processing 838/996 atomic regions from SNP 251259 to 251859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,733 DEBUG Processing 793/1108 atomic regions from SNP 237669 to 238269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,901 DEBUG Processing 839/996 atomic regions from SNP 251559 to 252159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,018 DEBUG Processing 794/1108 atomic regions from SNP 237969 to 238569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,159 DEBUG Processing 840/996 atomic regions from SNP 251859 to 252459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,299 DEBUG Processing 795/1108 atomic regions from SNP 238269 to 238869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,415 DEBUG Processing 841/996 atomic regions from SNP 252159 to 252759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,581 DEBUG Processing 796/1108 atomic regions from SNP 238569 to 239169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,672 DEBUG Processing 842/996 atomic regions from SNP 252459 to 253059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,860 DEBUG Processing 797/1108 atomic regions from SNP 238869 to 239469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,935 DEBUG Processing 843/996 atomic regions from SNP 252759 to 253359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,214 DEBUG Processing 798/1108 atomic regions from SNP 239169 to 239769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,234 DEBUG Processing 844/996 atomic regions from SNP 253059 to 253659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,580 DEBUG Processing 799/1108 atomic regions from SNP 239469 to 240069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,582 DEBUG Processing 845/996 atomic regions from SNP 253359 to 253959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,950 DEBUG Processing 846/996 atomic regions from SNP 253659 to 254259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,977 DEBUG Processing 800/1108 atomic regions from SNP 239769 to 240369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,092 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:45:18,248 DEBUG Processing 847/996 atomic regions from SNP 253959 to 254559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,284 DEBUG Processing 801/1108 atomic regions from SNP 240069 to 240669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,514 DEBUG Processing 848/996 atomic regions from SNP 254259 to 254859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,579 DEBUG Processing 802/1108 atomic regions from SNP 240369 to 240969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,789 DEBUG Processing 849/996 atomic regions from SNP 254559 to 255159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,873 DEBUG Processing 803/1108 atomic regions from SNP 240669 to 241269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,093 DEBUG Processing 850/996 atomic regions from SNP 254859 to 255459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,189 DEBUG Processing 804/1108 atomic regions from SNP 240969 to 241569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,468 DEBUG Processing 851/996 atomic regions from SNP 255159 to 255759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,592 DEBUG Processing 805/1108 atomic regions from SNP 241269 to 241869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,793 DEBUG Processing 852/996 atomic regions from SNP 255459 to 256059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,893 DEBUG Processing 806/1108 atomic regions from SNP 241569 to 242169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,156 DEBUG Processing 853/996 atomic regions from SNP 255759 to 256359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,260 DEBUG Processing 807/1108 atomic regions from SNP 241869 to 242469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,433 DEBUG Processing 854/996 atomic regions from SNP 256059 to 256659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,559 DEBUG Processing 808/1108 atomic regions from SNP 242169 to 242769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,707 DEBUG Processing 855/996 atomic regions from SNP 256359 to 256959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,855 DEBUG Processing 809/1108 atomic regions from SNP 242469 to 243069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,970 DEBUG Processing 856/996 atomic regions from SNP 256659 to 257259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,154 DEBUG Processing 810/1108 atomic regions from SNP 242769 to 243369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,259 DEBUG Processing 857/996 atomic regions from SNP 256959 to 257559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,439 DEBUG Processing 811/1108 atomic regions from SNP 243069 to 243669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,543 DEBUG Processing 858/996 atomic regions from SNP 257259 to 257859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,726 DEBUG Processing 812/1108 atomic regions from SNP 243369 to 243969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,805 DEBUG Processing 859/996 atomic regions from SNP 257559 to 258159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,014 DEBUG Processing 813/1108 atomic regions from SNP 243669 to 244269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,087 DEBUG Processing 860/996 atomic regions from SNP 257859 to 258459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,297 DEBUG Processing 814/1108 atomic regions from SNP 243969 to 244569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,352 DEBUG Processing 861/996 atomic regions from SNP 258159 to 258759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,582 DEBUG Processing 815/1108 atomic regions from SNP 244269 to 244869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,621 DEBUG Processing 862/996 atomic regions from SNP 258459 to 259059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,861 DEBUG Processing 816/1108 atomic regions from SNP 244569 to 245169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,886 DEBUG Processing 863/996 atomic regions from SNP 258759 to 259359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,151 DEBUG Processing 817/1108 atomic regions from SNP 244869 to 245469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,165 DEBUG Processing 864/996 atomic regions from SNP 259059 to 259659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,434 DEBUG Processing 818/1108 atomic regions from SNP 245169 to 245769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,455 DEBUG Processing 865/996 atomic regions from SNP 259359 to 259959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,713 DEBUG Processing 819/1108 atomic regions from SNP 245469 to 246069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,723 DEBUG Processing 866/996 atomic regions from SNP 259659 to 260259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,979 DEBUG Processing 867/996 atomic regions from SNP 259959 to 260559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,995 DEBUG Processing 820/1108 atomic regions from SNP 245769 to 246369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,236 DEBUG Processing 868/996 atomic regions from SNP 260259 to 260859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,272 DEBUG Processing 821/1108 atomic regions from SNP 246069 to 246669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,494 DEBUG Processing 869/996 atomic regions from SNP 260559 to 261159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,556 DEBUG Processing 822/1108 atomic regions from SNP 246369 to 246969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,755 DEBUG Processing 870/996 atomic regions from SNP 260859 to 261459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,837 DEBUG Processing 823/1108 atomic regions from SNP 246669 to 247269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,040 DEBUG Processing 871/996 atomic regions from SNP 261159 to 261759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,115 DEBUG Processing 824/1108 atomic regions from SNP 246969 to 247569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,319 DEBUG Processing 872/996 atomic regions from SNP 261459 to 262059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,388 DEBUG Processing 825/1108 atomic regions from SNP 247269 to 247869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,585 DEBUG Processing 873/996 atomic regions from SNP 261759 to 262359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,662 DEBUG Processing 826/1108 atomic regions from SNP 247569 to 248169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,851 DEBUG Processing 874/996 atomic regions from SNP 262059 to 262659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,932 DEBUG Processing 827/1108 atomic regions from SNP 247869 to 248469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,111 DEBUG Processing 875/996 atomic regions from SNP 262359 to 262959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,205 DEBUG Processing 828/1108 atomic regions from SNP 248169 to 248769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,369 DEBUG Processing 876/996 atomic regions from SNP 262659 to 263259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,479 DEBUG Processing 829/1108 atomic regions from SNP 248469 to 249069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,643 DEBUG Processing 877/996 atomic regions from SNP 262959 to 263559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,753 DEBUG Processing 830/1108 atomic regions from SNP 248769 to 249369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,920 DEBUG Processing 878/996 atomic regions from SNP 263259 to 263859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,971 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:45:27,025 DEBUG Processing 831/1108 atomic regions from SNP 249069 to 249669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,191 DEBUG Processing 879/996 atomic regions from SNP 263559 to 264159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,299 DEBUG Processing 832/1108 atomic regions from SNP 249369 to 249969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,460 DEBUG Processing 880/996 atomic regions from SNP 263859 to 264459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,577 DEBUG Processing 833/1108 atomic regions from SNP 249669 to 250269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,754 DEBUG Processing 881/996 atomic regions from SNP 264159 to 264759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,852 DEBUG Processing 834/1108 atomic regions from SNP 249969 to 250569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,019 DEBUG Processing 882/996 atomic regions from SNP 264459 to 265059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,126 DEBUG Processing 835/1108 atomic regions from SNP 250269 to 250869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,281 DEBUG Processing 883/996 atomic regions from SNP 264759 to 265359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,399 DEBUG Processing 836/1108 atomic regions from SNP 250569 to 251169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,549 DEBUG Processing 884/996 atomic regions from SNP 265059 to 265659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,676 DEBUG Processing 837/1108 atomic regions from SNP 250869 to 251469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,843 DEBUG Processing 885/996 atomic regions from SNP 265359 to 265959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,957 DEBUG Processing 838/1108 atomic regions from SNP 251169 to 251769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,137 DEBUG Processing 886/996 atomic regions from SNP 265659 to 266259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,259 DEBUG Processing 839/1108 atomic regions from SNP 251469 to 252069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,522 DEBUG Processing 887/996 atomic regions from SNP 265959 to 266559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,608 DEBUG Processing 840/1108 atomic regions from SNP 251769 to 252369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,916 DEBUG Processing 888/996 atomic regions from SNP 266259 to 266859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,014 DEBUG Processing 841/1108 atomic regions from SNP 252069 to 252669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,346 DEBUG Processing 889/996 atomic regions from SNP 266559 to 267159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,442 DEBUG Processing 842/1108 atomic regions from SNP 252369 to 252969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,596 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:45:30,599 DEBUG chr7: Signal quantile: 0.991. signal threshold: 10. Best RMSEA: 0.016 2025-01-31 09:45:30,766 DEBUG Processing 890/996 atomic regions from SNP 266859 to 267459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,801 DEBUG Processing 843/1108 atomic regions from SNP 252669 to 253269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,044 DEBUG Processing 891/996 atomic regions from SNP 267159 to 267759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,104 DEBUG Processing 844/1108 atomic regions from SNP 252969 to 253569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,311 DEBUG Processing 892/996 atomic regions from SNP 267459 to 268059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,414 DEBUG Processing 845/1108 atomic regions from SNP 253269 to 253869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,581 DEBUG Processing 893/996 atomic regions from SNP 267759 to 268359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,782 DEBUG Processing 846/1108 atomic regions from SNP 253569 to 254169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,888 DEBUG Processing 894/996 atomic regions from SNP 268059 to 268659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,151 DEBUG Processing 847/1108 atomic regions from SNP 253869 to 254469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,222 DEBUG Processing 895/996 atomic regions from SNP 268359 to 268959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,563 DEBUG Processing 848/1108 atomic regions from SNP 254169 to 254769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,605 DEBUG Processing 896/996 atomic regions from SNP 268659 to 269259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,807 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:45:32,836 DEBUG chr10: Signal quantile: 0.994. signal threshold: 10. Best RMSEA: 0.021 2025-01-31 09:45:32,894 DEBUG Processing 849/1108 atomic regions from SNP 254469 to 255069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,911 DEBUG Processing 897/996 atomic regions from SNP 268959 to 269559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,194 DEBUG Processing 850/1108 atomic regions from SNP 254769 to 255369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,196 DEBUG Processing 898/996 atomic regions from SNP 269259 to 269859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,464 DEBUG Processing 899/996 atomic regions from SNP 269559 to 270159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,478 DEBUG Processing 851/1108 atomic regions from SNP 255069 to 255669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,762 DEBUG Processing 900/996 atomic regions from SNP 269859 to 270459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,796 DEBUG Processing 852/1108 atomic regions from SNP 255369 to 255969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,951 DEBUG chr7 total SNP count: 226477 2025-01-31 09:45:33,951 DEBUG chr7 length: 145441459 2025-01-31 09:45:33,951 DEBUG ----------------------------------------- 2025-01-31 09:45:33,951 INFO Processing SNPs in chr7 2025-01-31 09:45:34,042 DEBUG Processing 901/996 atomic regions from SNP 270159 to 270759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,097 DEBUG Processing 853/1108 atomic regions from SNP 255669 to 256269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,309 DEBUG Processing 902/996 atomic regions from SNP 270459 to 271059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,322 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 20190), (20190, 20206), (20206, 226477)] 2025-01-31 09:45:34,387 DEBUG Processing 854/1108 atomic regions from SNP 255969 to 256569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,430 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:34,586 DEBUG Processing 903/996 atomic regions from SNP 270759 to 271359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,694 DEBUG Processing 855/1108 atomic regions from SNP 256269 to 256869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,849 DEBUG Processing 904/996 atomic regions from SNP 271059 to 271659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,978 DEBUG Processing 856/1108 atomic regions from SNP 256569 to 257169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,116 DEBUG Processing 905/996 atomic regions from SNP 271359 to 271959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,258 DEBUG Processing 857/1108 atomic regions from SNP 256869 to 257469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,362 DEBUG chr10 total SNP count: 217610 2025-01-31 09:45:35,362 DEBUG chr10 length: 130694993 2025-01-31 09:45:35,362 DEBUG ----------------------------------------- 2025-01-31 09:45:35,362 INFO Processing SNPs in chr10 2025-01-31 09:45:35,384 DEBUG Processing 906/996 atomic regions from SNP 271659 to 272259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,537 DEBUG Processing 858/1108 atomic regions from SNP 257169 to 257769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,588 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 217610)] 2025-01-31 09:45:35,651 DEBUG Processing 907/996 atomic regions from SNP 271959 to 272559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,742 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:35,813 DEBUG Processing 859/1108 atomic regions from SNP 257469 to 258069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,924 DEBUG Processing 908/996 atomic regions from SNP 272259 to 272859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,084 DEBUG Processing 860/1108 atomic regions from SNP 257769 to 258369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,196 DEBUG Processing 909/996 atomic regions from SNP 272559 to 273159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,361 DEBUG Processing 861/1108 atomic regions from SNP 258069 to 258669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,462 DEBUG Processing 910/996 atomic regions from SNP 272859 to 273459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,643 DEBUG Processing 862/1108 atomic regions from SNP 258369 to 258969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,722 DEBUG Processing 911/996 atomic regions from SNP 273159 to 273759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,883 DEBUG Segmenting atomic regions: 2025-01-31 09:45:36,924 DEBUG Processing 863/1108 atomic regions from SNP 258669 to 259269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,988 DEBUG Processing 1/66 atomic regions from SNP 0 to 602 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:36,990 DEBUG Processing 912/996 atomic regions from SNP 273459 to 274059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,202 DEBUG Processing 864/1108 atomic regions from SNP 258969 to 259569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,230 DEBUG Processing 2/66 atomic regions from SNP 302 to 904 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:37,262 DEBUG Processing 913/996 atomic regions from SNP 273759 to 274359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,466 DEBUG Processing 3/66 atomic regions from SNP 604 to 1206 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:37,490 DEBUG Processing 865/1108 atomic regions from SNP 259269 to 259869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,535 DEBUG Processing 914/996 atomic regions from SNP 274059 to 274659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,733 DEBUG Processing 4/66 atomic regions from SNP 906 to 1508 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:37,801 DEBUG Processing 866/1108 atomic regions from SNP 259569 to 260169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,812 DEBUG Processing 915/996 atomic regions from SNP 274359 to 274959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,977 DEBUG Processing 5/66 atomic regions from SNP 1208 to 1810 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:38,082 DEBUG Processing 916/996 atomic regions from SNP 274659 to 275259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,102 DEBUG Processing 867/1108 atomic regions from SNP 259869 to 260469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,205 DEBUG Processing 6/66 atomic regions from SNP 1510 to 2112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:38,351 DEBUG Processing 917/996 atomic regions from SNP 274959 to 275559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,389 DEBUG Processing 868/1108 atomic regions from SNP 260169 to 260769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,457 DEBUG Processing 7/66 atomic regions from SNP 1812 to 2414 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:38,618 DEBUG Processing 918/996 atomic regions from SNP 275259 to 275859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,680 DEBUG Processing 869/1108 atomic regions from SNP 260469 to 261069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,728 DEBUG Processing 8/66 atomic regions from SNP 2114 to 2716 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:38,885 DEBUG Processing 919/996 atomic regions from SNP 275559 to 276159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,971 DEBUG Processing 870/1108 atomic regions from SNP 260769 to 261369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,996 DEBUG Processing 9/66 atomic regions from SNP 2416 to 3018 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:39,157 DEBUG Processing 920/996 atomic regions from SNP 275859 to 276459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,265 DEBUG Processing 871/1108 atomic regions from SNP 261069 to 261669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,267 DEBUG Processing 10/66 atomic regions from SNP 2718 to 3320 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:39,431 DEBUG Processing 921/996 atomic regions from SNP 276159 to 276759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,537 DEBUG Processing 11/66 atomic regions from SNP 3020 to 3622 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:39,576 DEBUG Processing 872/1108 atomic regions from SNP 261369 to 261969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,702 DEBUG Processing 922/996 atomic regions from SNP 276459 to 277059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,762 DEBUG Segmenting atomic regions: 2025-01-31 09:45:39,778 DEBUG Processing 12/66 atomic regions from SNP 3322 to 3924 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:39,874 DEBUG Processing 1/826 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,881 DEBUG Processing 873/1108 atomic regions from SNP 261669 to 262269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,971 DEBUG Processing 923/996 atomic regions from SNP 276759 to 277359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,009 DEBUG Processing 13/66 atomic regions from SNP 3624 to 4226 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:40,121 DEBUG Processing 2/826 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,169 DEBUG Processing 874/1108 atomic regions from SNP 261969 to 262569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,240 DEBUG Processing 924/996 atomic regions from SNP 277059 to 277659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,250 DEBUG Processing 14/66 atomic regions from SNP 3926 to 4528 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:40,364 DEBUG Processing 3/826 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,466 DEBUG Processing 875/1108 atomic regions from SNP 262269 to 262869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,499 DEBUG Processing 15/66 atomic regions from SNP 4228 to 4830 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:40,517 DEBUG Processing 925/996 atomic regions from SNP 277359 to 277959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,611 DEBUG Processing 4/826 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,763 DEBUG Processing 16/66 atomic regions from SNP 4530 to 5132 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:40,783 DEBUG Processing 876/1108 atomic regions from SNP 262569 to 263169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,803 DEBUG Processing 926/996 atomic regions from SNP 277659 to 278259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,863 DEBUG Processing 5/826 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,032 DEBUG Processing 17/66 atomic regions from SNP 4832 to 5434 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:41,088 DEBUG Processing 927/996 atomic regions from SNP 277959 to 278559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,092 DEBUG Processing 877/1108 atomic regions from SNP 262869 to 263469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,118 DEBUG Processing 6/826 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,278 DEBUG Processing 18/66 atomic regions from SNP 5134 to 5736 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:41,365 DEBUG Processing 928/996 atomic regions from SNP 278259 to 278859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,370 DEBUG Processing 7/826 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,398 DEBUG Processing 878/1108 atomic regions from SNP 263169 to 263769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,552 DEBUG Processing 19/66 atomic regions from SNP 5436 to 6038 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:41,613 DEBUG Processing 8/826 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,636 DEBUG Processing 929/996 atomic regions from SNP 278559 to 279159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,694 DEBUG Processing 879/1108 atomic regions from SNP 263469 to 264069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,809 DEBUG Processing 20/66 atomic regions from SNP 5738 to 6340 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:41,857 DEBUG Processing 9/826 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,862 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:45:41,864 DEBUG chr8: Signal quantile: 0.993. signal threshold: 10. Best RMSEA: 0.019 2025-01-31 09:45:41,907 DEBUG Processing 930/996 atomic regions from SNP 278859 to 279459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,993 DEBUG Processing 880/1108 atomic regions from SNP 263769 to 264369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,055 DEBUG Processing 21/66 atomic regions from SNP 6040 to 6642 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:42,099 DEBUG Processing 10/826 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,177 DEBUG Processing 931/996 atomic regions from SNP 279159 to 279759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,288 DEBUG Processing 881/1108 atomic regions from SNP 264069 to 264669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,307 DEBUG Processing 22/66 atomic regions from SNP 6342 to 6944 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:42,344 DEBUG Processing 11/826 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,443 DEBUG Processing 932/996 atomic regions from SNP 279459 to 280059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,562 DEBUG Processing 23/66 atomic regions from SNP 6644 to 7246 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:42,582 DEBUG Processing 882/1108 atomic regions from SNP 264369 to 264969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,592 DEBUG Processing 12/826 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,712 DEBUG Processing 933/996 atomic regions from SNP 279759 to 280359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,818 DEBUG Processing 24/66 atomic regions from SNP 6946 to 7547 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:42,848 DEBUG Processing 13/826 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,891 DEBUG Processing 883/1108 atomic regions from SNP 264669 to 265269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,002 DEBUG Processing 934/996 atomic regions from SNP 280059 to 280659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,049 DEBUG Processing 25/66 atomic regions from SNP 7247 to 7848 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:43,095 DEBUG Processing 14/826 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,186 DEBUG Processing 884/1108 atomic regions from SNP 264969 to 265569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,285 DEBUG Processing 26/66 atomic regions from SNP 7548 to 8149 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:43,292 DEBUG Processing 935/996 atomic regions from SNP 280359 to 280959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,343 DEBUG Processing 15/826 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,482 DEBUG Processing 885/1108 atomic regions from SNP 265269 to 265869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,536 DEBUG Processing 27/66 atomic regions from SNP 7849 to 8450 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:43,565 DEBUG Processing 936/996 atomic regions from SNP 280659 to 281259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,597 DEBUG Processing 16/826 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,776 DEBUG Processing 886/1108 atomic regions from SNP 265569 to 266169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,787 DEBUG Processing 28/66 atomic regions from SNP 8150 to 8751 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:43,833 DEBUG Processing 937/996 atomic regions from SNP 280959 to 281559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,846 DEBUG Processing 17/826 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,036 DEBUG Processing 29/66 atomic regions from SNP 8451 to 9052 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:44,067 DEBUG Processing 887/1108 atomic regions from SNP 265869 to 266469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,087 DEBUG Processing 18/826 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,104 DEBUG Processing 938/996 atomic regions from SNP 281259 to 281859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,253 DEBUG chr8 total SNP count: 212834 2025-01-31 09:45:44,254 DEBUG chr8 length: 129401213 2025-01-31 09:45:44,254 DEBUG ----------------------------------------- 2025-01-31 09:45:44,254 INFO Processing SNPs in chr8 2025-01-31 09:45:44,281 DEBUG Processing 30/66 atomic regions from SNP 8752 to 9353 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:44,332 DEBUG Processing 19/826 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,360 DEBUG Processing 888/1108 atomic regions from SNP 266169 to 266769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,376 DEBUG Processing 939/996 atomic regions from SNP 281559 to 282159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,469 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 212834)] 2025-01-31 09:45:44,510 DEBUG Processing 31/66 atomic regions from SNP 9053 to 9654 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:44,580 DEBUG Processing 20/826 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,619 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:44,646 DEBUG Processing 940/996 atomic regions from SNP 281859 to 282459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,653 DEBUG Processing 889/1108 atomic regions from SNP 266469 to 267069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,737 DEBUG Processing 32/66 atomic regions from SNP 9354 to 9955 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:44,827 DEBUG Processing 21/826 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,938 DEBUG Processing 941/996 atomic regions from SNP 282159 to 282759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,939 DEBUG Processing 890/1108 atomic regions from SNP 266769 to 267369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,975 DEBUG Processing 33/66 atomic regions from SNP 9655 to 10256 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:45,068 DEBUG Processing 22/826 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,222 DEBUG Processing 942/996 atomic regions from SNP 282459 to 283059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,223 DEBUG Processing 34/66 atomic regions from SNP 9956 to 10557 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:45,232 DEBUG Processing 891/1108 atomic regions from SNP 267069 to 267669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,301 DEBUG Processing 23/826 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,493 DEBUG Processing 943/996 atomic regions from SNP 282759 to 283359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,498 DEBUG Processing 35/66 atomic regions from SNP 10257 to 10858 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:45,526 DEBUG Processing 892/1108 atomic regions from SNP 267369 to 267969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,542 DEBUG Processing 24/826 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,750 DEBUG Processing 36/66 atomic regions from SNP 10558 to 11159 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:45,762 DEBUG Processing 944/996 atomic regions from SNP 283059 to 283659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,788 DEBUG Processing 25/826 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,820 DEBUG Processing 893/1108 atomic regions from SNP 267669 to 268269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,990 DEBUG Processing 37/66 atomic regions from SNP 10859 to 11460 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:46,034 DEBUG Processing 26/826 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,034 DEBUG Processing 945/996 atomic regions from SNP 283359 to 283959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,112 DEBUG Processing 894/1108 atomic regions from SNP 267969 to 268569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,228 DEBUG Processing 38/66 atomic regions from SNP 11160 to 11761 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:46,279 DEBUG Processing 27/826 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,310 DEBUG Processing 946/996 atomic regions from SNP 283659 to 284259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,401 DEBUG Processing 895/1108 atomic regions from SNP 268269 to 268869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,468 DEBUG Processing 39/66 atomic regions from SNP 11461 to 12062 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:46,517 DEBUG Processing 28/826 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,588 DEBUG Processing 947/996 atomic regions from SNP 283959 to 284559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,690 DEBUG Processing 896/1108 atomic regions from SNP 268569 to 269169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,710 DEBUG Processing 40/66 atomic regions from SNP 11762 to 12363 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:46,744 DEBUG Processing 29/826 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,881 DEBUG Processing 948/996 atomic regions from SNP 284259 to 284859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,960 DEBUG Processing 41/66 atomic regions from SNP 12063 to 12664 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:46,972 DEBUG Processing 30/826 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,997 DEBUG Processing 897/1108 atomic regions from SNP 268869 to 269469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,172 DEBUG Processing 949/996 atomic regions from SNP 284559 to 285159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,199 DEBUG Processing 42/66 atomic regions from SNP 12364 to 12965 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:47,205 DEBUG Processing 31/826 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,301 DEBUG Processing 898/1108 atomic regions from SNP 269169 to 269769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,438 DEBUG Processing 43/66 atomic regions from SNP 12665 to 13266 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:47,440 DEBUG Processing 32/826 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,445 DEBUG Processing 950/996 atomic regions from SNP 284859 to 285459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,578 DEBUG Processing 899/1108 atomic regions from SNP 269469 to 270069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,682 DEBUG Processing 33/826 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,685 DEBUG Processing 44/66 atomic regions from SNP 12966 to 13567 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:47,729 DEBUG Processing 951/996 atomic regions from SNP 285159 to 285759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,852 DEBUG Processing 900/1108 atomic regions from SNP 269769 to 270369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,935 DEBUG Processing 34/826 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,939 DEBUG Processing 45/66 atomic regions from SNP 13267 to 13868 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:48,044 DEBUG Processing 952/996 atomic regions from SNP 285459 to 286059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,128 DEBUG Processing 901/1108 atomic regions from SNP 270069 to 270669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,169 DEBUG Processing 35/826 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,191 DEBUG Processing 46/66 atomic regions from SNP 13568 to 14169 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:48,348 DEBUG Processing 953/996 atomic regions from SNP 285759 to 286359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,401 DEBUG Processing 36/826 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,416 DEBUG Processing 902/1108 atomic regions from SNP 270369 to 270969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,447 DEBUG Processing 47/66 atomic regions from SNP 13869 to 14470 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:48,643 DEBUG Processing 37/826 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,647 DEBUG Processing 954/996 atomic regions from SNP 286059 to 286659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,705 DEBUG Processing 48/66 atomic regions from SNP 14170 to 14771 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:48,714 DEBUG Processing 903/1108 atomic regions from SNP 270669 to 271269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,895 DEBUG Processing 38/826 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,944 DEBUG Processing 955/996 atomic regions from SNP 286359 to 286959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,971 DEBUG Processing 49/66 atomic regions from SNP 14471 to 15072 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:49,005 DEBUG Processing 904/1108 atomic regions from SNP 270969 to 271569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,141 DEBUG Processing 39/826 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,215 DEBUG Processing 50/66 atomic regions from SNP 14772 to 15373 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:49,220 DEBUG Processing 956/996 atomic regions from SNP 286659 to 287259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,289 DEBUG Processing 905/1108 atomic regions from SNP 271269 to 271869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,383 DEBUG Processing 40/826 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,447 DEBUG Processing 51/66 atomic regions from SNP 15073 to 15674 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:49,486 DEBUG Processing 957/996 atomic regions from SNP 286959 to 287559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,573 DEBUG Processing 906/1108 atomic regions from SNP 271569 to 272169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,624 DEBUG Processing 41/826 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,700 DEBUG Processing 52/66 atomic regions from SNP 15374 to 15975 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:49,754 DEBUG Processing 958/996 atomic regions from SNP 287259 to 287859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,859 DEBUG Processing 907/1108 atomic regions from SNP 271869 to 272469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,870 DEBUG Processing 42/826 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,949 DEBUG Processing 53/66 atomic regions from SNP 15675 to 16276 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:50,017 DEBUG Processing 959/996 atomic regions from SNP 287559 to 288159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,123 DEBUG Processing 43/826 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,147 DEBUG Processing 908/1108 atomic regions from SNP 272169 to 272769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,195 DEBUG Processing 54/66 atomic regions from SNP 15976 to 16577 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:50,279 DEBUG Processing 960/996 atomic regions from SNP 287859 to 288459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,372 DEBUG Processing 44/826 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,437 DEBUG Processing 909/1108 atomic regions from SNP 272469 to 273069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,444 DEBUG Processing 55/66 atomic regions from SNP 16277 to 16878 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:50,541 DEBUG Processing 961/996 atomic regions from SNP 288159 to 288759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,606 DEBUG Processing 45/826 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,693 DEBUG Processing 56/66 atomic regions from SNP 16578 to 17179 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:50,729 DEBUG Processing 910/1108 atomic regions from SNP 272769 to 273369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,810 DEBUG Processing 962/996 atomic regions from SNP 288459 to 289059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,836 DEBUG Processing 46/826 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,940 DEBUG Processing 57/66 atomic regions from SNP 16879 to 17480 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:51,016 DEBUG Processing 911/1108 atomic regions from SNP 273069 to 273669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,071 DEBUG Processing 47/826 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,077 DEBUG Processing 963/996 atomic regions from SNP 288759 to 289359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,181 DEBUG Processing 58/66 atomic regions from SNP 17180 to 17781 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:51,311 DEBUG Processing 48/826 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,324 DEBUG Processing 912/1108 atomic regions from SNP 273369 to 273969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,344 DEBUG Processing 964/996 atomic regions from SNP 289059 to 289659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,422 DEBUG Processing 59/66 atomic regions from SNP 17481 to 18082 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:51,558 DEBUG Processing 49/826 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,605 DEBUG Processing 913/1108 atomic regions from SNP 273669 to 274269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,615 DEBUG Processing 965/996 atomic regions from SNP 289359 to 289959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,672 DEBUG Processing 60/66 atomic regions from SNP 17782 to 18383 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:51,794 DEBUG Processing 50/826 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,882 DEBUG Processing 966/996 atomic regions from SNP 289659 to 290259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,883 DEBUG Processing 914/1108 atomic regions from SNP 273969 to 274569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,936 DEBUG Processing 61/66 atomic regions from SNP 18083 to 18684 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:52,034 DEBUG Processing 51/826 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,148 DEBUG Processing 967/996 atomic regions from SNP 289959 to 290559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,166 DEBUG Processing 915/1108 atomic regions from SNP 274269 to 274869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,214 DEBUG Processing 62/66 atomic regions from SNP 18384 to 18985 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:52,270 DEBUG Processing 52/826 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,435 DEBUG Processing 968/996 atomic regions from SNP 290259 to 290859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,442 DEBUG Processing 916/1108 atomic regions from SNP 274569 to 275169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,488 DEBUG Processing 63/66 atomic regions from SNP 18685 to 19286 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:52,510 DEBUG Processing 53/826 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,703 DEBUG Processing 969/996 atomic regions from SNP 290559 to 291159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,720 DEBUG Processing 917/1108 atomic regions from SNP 274869 to 275469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,749 DEBUG Processing 54/826 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,754 DEBUG Processing 64/66 atomic regions from SNP 18986 to 19587 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:52,981 DEBUG Processing 970/996 atomic regions from SNP 290859 to 291459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,997 DEBUG Processing 55/826 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,001 DEBUG Processing 918/1108 atomic regions from SNP 275169 to 275769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,018 DEBUG Processing 65/66 atomic regions from SNP 19287 to 19888 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:53,250 DEBUG Processing 56/826 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,259 DEBUG Processing 971/996 atomic regions from SNP 291159 to 291759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,282 DEBUG Processing 66/66 atomic regions from SNP 19588 to 20189 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:53,289 DEBUG Processing 919/1108 atomic regions from SNP 275469 to 276069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,421 DEBUG Unique SNPs positions in subchromosome 1: 20190 2025-01-31 09:45:53,466 DEBUG Subchromosome time: 19.035554874688387, subchromosome SNPs: 20190 2025-01-31 09:45:53,500 DEBUG Processing 57/826 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,524 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:53,537 DEBUG Processing 972/996 atomic regions from SNP 291459 to 292059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,576 DEBUG Processing 920/1108 atomic regions from SNP 275769 to 276369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,746 DEBUG Processing 58/826 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,812 DEBUG Processing 973/996 atomic regions from SNP 291759 to 292359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,858 DEBUG Processing 921/1108 atomic regions from SNP 276069 to 276669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,990 DEBUG Processing 59/826 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,087 DEBUG Processing 974/996 atomic regions from SNP 292059 to 292659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,154 DEBUG Processing 922/1108 atomic regions from SNP 276369 to 276969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,231 DEBUG Processing 60/826 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,360 DEBUG Processing 975/996 atomic regions from SNP 292359 to 292959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,431 DEBUG Processing 923/1108 atomic regions from SNP 276669 to 277269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,466 DEBUG Processing 61/826 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,626 DEBUG Processing 976/996 atomic regions from SNP 292659 to 293259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,703 DEBUG Processing 62/826 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,714 DEBUG Processing 924/1108 atomic regions from SNP 276969 to 277569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,897 DEBUG Processing 977/996 atomic regions from SNP 292959 to 293559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,943 DEBUG Processing 63/826 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,000 DEBUG Processing 925/1108 atomic regions from SNP 277269 to 277869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,159 DEBUG Processing 978/996 atomic regions from SNP 293259 to 293859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,186 DEBUG Processing 64/826 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,289 DEBUG Processing 926/1108 atomic regions from SNP 277569 to 278169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,427 DEBUG Processing 979/996 atomic regions from SNP 293559 to 294159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,430 DEBUG Processing 65/826 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,578 DEBUG Processing 927/1108 atomic regions from SNP 277869 to 278469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,676 DEBUG Processing 66/826 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,699 DEBUG Processing 980/996 atomic regions from SNP 293859 to 294459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,870 DEBUG Processing 928/1108 atomic regions from SNP 278169 to 278769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,918 DEBUG Processing 67/826 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,982 DEBUG Processing 981/996 atomic regions from SNP 294159 to 294759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,150 DEBUG Processing 68/826 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,177 DEBUG Processing 929/1108 atomic regions from SNP 278469 to 279069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,262 DEBUG Processing 982/996 atomic regions from SNP 294459 to 295059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,383 DEBUG Processing 69/826 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,482 DEBUG Processing 930/1108 atomic regions from SNP 278769 to 279369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,530 DEBUG Processing 983/996 atomic regions from SNP 294759 to 295359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,622 DEBUG Processing 70/826 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,794 DEBUG Processing 984/996 atomic regions from SNP 295059 to 295659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,797 DEBUG Processing 931/1108 atomic regions from SNP 279069 to 279669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,861 DEBUG Processing 71/826 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,073 DEBUG Processing 985/996 atomic regions from SNP 295359 to 295959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,102 DEBUG Processing 72/826 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,103 DEBUG Processing 932/1108 atomic regions from SNP 279369 to 279969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,346 DEBUG Processing 73/826 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,365 DEBUG Processing 986/996 atomic regions from SNP 295659 to 296259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,404 DEBUG Processing 933/1108 atomic regions from SNP 279669 to 280269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,585 DEBUG Processing 74/826 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,634 DEBUG Processing 987/996 atomic regions from SNP 295959 to 296559 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,677 DEBUG Processing 934/1108 atomic regions from SNP 279969 to 280569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,829 DEBUG Processing 75/826 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,906 DEBUG Processing 988/996 atomic regions from SNP 296259 to 296859 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,952 DEBUG Processing 935/1108 atomic regions from SNP 280269 to 280869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,088 DEBUG Processing 76/826 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:58,179 DEBUG Processing 989/996 atomic regions from SNP 296559 to 297159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,230 DEBUG Processing 936/1108 atomic regions from SNP 280569 to 281169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,335 DEBUG Processing 77/826 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:58,448 DEBUG Processing 990/996 atomic regions from SNP 296859 to 297459 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,512 DEBUG Processing 937/1108 atomic regions from SNP 280869 to 281469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,580 DEBUG Processing 78/826 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:58,709 DEBUG Processing 991/996 atomic regions from SNP 297159 to 297759 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,792 DEBUG Processing 938/1108 atomic regions from SNP 281169 to 281769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,819 DEBUG Processing 79/826 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:58,988 DEBUG Processing 992/996 atomic regions from SNP 297459 to 298059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,049 DEBUG Processing 80/826 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:59,071 DEBUG Processing 939/1108 atomic regions from SNP 281469 to 282069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,255 DEBUG Processing 993/996 atomic regions from SNP 297759 to 298359 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,278 DEBUG Processing 81/826 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:59,377 DEBUG Processing 940/1108 atomic regions from SNP 281769 to 282369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,517 DEBUG Processing 82/826 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:59,530 DEBUG Processing 994/996 atomic regions from SNP 298059 to 298659 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,664 DEBUG Processing 941/1108 atomic regions from SNP 282069 to 282669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,764 DEBUG Processing 83/826 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:59,799 DEBUG Processing 995/996 atomic regions from SNP 298359 to 298959 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,944 DEBUG Processing 942/1108 atomic regions from SNP 282369 to 282969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,015 DEBUG Processing 84/826 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:00,073 DEBUG Processing 996/996 atomic regions from SNP 298659 to 299259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,214 DEBUG Unique SNPs positions in subchromosome 1: 299260 2025-01-31 09:46:00,224 DEBUG Processing 943/1108 atomic regions from SNP 282669 to 283269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,257 DEBUG Processing 85/826 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:00,490 DEBUG Processing 86/826 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:00,503 DEBUG Processing 944/1108 atomic regions from SNP 282969 to 283569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,728 DEBUG Processing 87/826 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:00,781 DEBUG Processing 945/1108 atomic regions from SNP 283269 to 283869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,963 DEBUG Processing 88/826 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:01,054 DEBUG Processing 946/1108 atomic regions from SNP 283569 to 284169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,201 DEBUG Processing 89/826 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:01,329 DEBUG Processing 947/1108 atomic regions from SNP 283869 to 284469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,436 DEBUG Processing 90/826 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:01,613 DEBUG Processing 948/1108 atomic regions from SNP 284169 to 284769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,669 DEBUG Processing 91/826 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:01,894 DEBUG Processing 949/1108 atomic regions from SNP 284469 to 285069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,900 DEBUG Processing 92/826 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,141 DEBUG Processing 93/826 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,175 DEBUG Processing 950/1108 atomic regions from SNP 284769 to 285369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,385 DEBUG Processing 94/826 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,449 DEBUG Processing 951/1108 atomic regions from SNP 285069 to 285669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,629 DEBUG Processing 95/826 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,711 DEBUG Segmenting atomic regions: 2025-01-31 09:46:02,720 DEBUG Processing 952/1108 atomic regions from SNP 285369 to 285969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,809 DEBUG Processing 1/724 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:02,873 DEBUG Processing 96/826 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,997 DEBUG Processing 953/1108 atomic regions from SNP 285669 to 286269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,053 DEBUG Processing 2/724 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,130 DEBUG Processing 97/826 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:03,271 DEBUG Processing 954/1108 atomic regions from SNP 285969 to 286569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,283 DEBUG Processing 3/724 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,379 DEBUG Processing 98/826 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:03,505 DEBUG Processing 4/724 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,547 DEBUG Processing 955/1108 atomic regions from SNP 286269 to 286869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,624 DEBUG Processing 99/826 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:03,736 DEBUG Processing 5/724 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,832 DEBUG Processing 956/1108 atomic regions from SNP 286569 to 287169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,869 DEBUG Processing 100/826 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:03,973 DEBUG Processing 6/724 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,106 DEBUG Processing 957/1108 atomic regions from SNP 286869 to 287469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,107 DEBUG Processing 101/826 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:04,205 DEBUG Processing 7/724 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,343 DEBUG Processing 102/826 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:04,382 DEBUG Processing 958/1108 atomic regions from SNP 287169 to 287769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,435 DEBUG Processing 8/724 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,580 DEBUG Processing 103/826 atomic regions from SNP 30702 to 31303 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:04,658 DEBUG Processing 9/724 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,662 DEBUG Processing 959/1108 atomic regions from SNP 287469 to 288069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,817 DEBUG Processing 104/826 atomic regions from SNP 31003 to 31604 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:04,884 DEBUG Processing 10/724 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,945 DEBUG Processing 960/1108 atomic regions from SNP 287769 to 288369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,064 DEBUG Processing 105/826 atomic regions from SNP 31304 to 31905 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,115 DEBUG Processing 11/724 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:05,228 DEBUG Processing 961/1108 atomic regions from SNP 288069 to 288669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,308 DEBUG Processing 106/826 atomic regions from SNP 31605 to 32206 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,346 DEBUG Processing 12/724 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:05,520 DEBUG Processing 962/1108 atomic regions from SNP 288369 to 288969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,546 DEBUG Processing 107/826 atomic regions from SNP 31906 to 32507 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,581 DEBUG Processing 13/724 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:05,779 DEBUG Processing 108/826 atomic regions from SNP 32207 to 32808 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,811 DEBUG Processing 14/724 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:05,842 DEBUG Processing 963/1108 atomic regions from SNP 288669 to 289269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,017 DEBUG Processing 109/826 atomic regions from SNP 32508 to 33109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,035 DEBUG Processing 15/724 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:06,167 DEBUG Processing 964/1108 atomic regions from SNP 288969 to 289569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,262 DEBUG Processing 110/826 atomic regions from SNP 32809 to 33410 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,266 DEBUG Processing 16/724 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:06,482 DEBUG Processing 965/1108 atomic regions from SNP 289269 to 289869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,513 DEBUG Processing 111/826 atomic regions from SNP 33110 to 33711 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,518 DEBUG Processing 17/724 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:06,755 DEBUG Processing 18/724 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:06,762 DEBUG Processing 112/826 atomic regions from SNP 33411 to 34012 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,780 DEBUG Processing 966/1108 atomic regions from SNP 289569 to 290169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,991 DEBUG Processing 19/724 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,002 DEBUG Processing 113/826 atomic regions from SNP 33712 to 34313 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,087 DEBUG Processing 967/1108 atomic regions from SNP 289869 to 290469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,229 DEBUG Processing 20/724 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,247 DEBUG Processing 114/826 atomic regions from SNP 34013 to 34614 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,377 DEBUG Processing 968/1108 atomic regions from SNP 290169 to 290769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,456 DEBUG Processing 21/724 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,493 DEBUG Processing 115/826 atomic regions from SNP 34314 to 34915 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,672 DEBUG Processing 969/1108 atomic regions from SNP 290469 to 291069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,690 DEBUG Processing 22/724 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,744 DEBUG Processing 116/826 atomic regions from SNP 34615 to 35216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,924 DEBUG Processing 23/724 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,982 DEBUG Processing 970/1108 atomic regions from SNP 290769 to 291369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,995 DEBUG Processing 117/826 atomic regions from SNP 34916 to 35517 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,152 DEBUG Processing 24/724 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:08,247 DEBUG Processing 118/826 atomic regions from SNP 35217 to 35818 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,293 DEBUG Processing 971/1108 atomic regions from SNP 291069 to 291669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,379 DEBUG Processing 25/724 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:08,487 DEBUG Processing 119/826 atomic regions from SNP 35518 to 36119 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,581 DEBUG Processing 972/1108 atomic regions from SNP 291369 to 291969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,612 DEBUG Processing 26/724 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:08,723 DEBUG Processing 120/826 atomic regions from SNP 35819 to 36420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,832 DEBUG Processing 27/724 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:08,859 DEBUG Processing 973/1108 atomic regions from SNP 291669 to 292269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,963 DEBUG Processing 121/826 atomic regions from SNP 36120 to 36721 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,052 DEBUG Processing 28/724 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:09,135 DEBUG Processing 974/1108 atomic regions from SNP 291969 to 292569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,210 DEBUG Processing 122/826 atomic regions from SNP 36421 to 37022 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,277 DEBUG Processing 29/724 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:09,411 DEBUG Processing 975/1108 atomic regions from SNP 292269 to 292869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,448 DEBUG Processing 123/826 atomic regions from SNP 36722 to 37323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,512 DEBUG Processing 30/724 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:09,684 DEBUG Processing 124/826 atomic regions from SNP 37023 to 37624 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,690 DEBUG Processing 976/1108 atomic regions from SNP 292569 to 293169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,742 DEBUG Processing 31/724 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:09,927 DEBUG Processing 125/826 atomic regions from SNP 37324 to 37925 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,967 DEBUG Processing 32/724 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:09,970 DEBUG Processing 977/1108 atomic regions from SNP 292869 to 293469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,175 DEBUG Processing 126/826 atomic regions from SNP 37625 to 38226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,194 DEBUG Processing 33/724 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:10,254 DEBUG Processing 978/1108 atomic regions from SNP 293169 to 293769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,420 DEBUG Processing 34/724 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:10,421 DEBUG Processing 127/826 atomic regions from SNP 37926 to 38527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,534 DEBUG Processing 979/1108 atomic regions from SNP 293469 to 294069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,649 DEBUG Processing 35/724 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:10,670 DEBUG Processing 128/826 atomic regions from SNP 38227 to 38828 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,815 DEBUG Processing 980/1108 atomic regions from SNP 293769 to 294369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,881 DEBUG Processing 36/724 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:10,917 DEBUG Processing 129/826 atomic regions from SNP 38528 to 39129 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,101 DEBUG Processing 981/1108 atomic regions from SNP 294069 to 294669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,114 DEBUG Processing 37/724 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,160 DEBUG Processing 130/826 atomic regions from SNP 38829 to 39430 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,255 DEBUG Segmenting atomic regions: 2025-01-31 09:46:11,344 DEBUG Processing 38/724 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,353 DEBUG Processing 1/708 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:11,397 DEBUG Processing 982/1108 atomic regions from SNP 294369 to 294969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,401 DEBUG Processing 131/826 atomic regions from SNP 39130 to 39731 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,574 DEBUG Processing 39/724 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,580 DEBUG Processing 2/708 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:11,648 DEBUG Processing 132/826 atomic regions from SNP 39431 to 40032 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,689 DEBUG Processing 983/1108 atomic regions from SNP 294669 to 295269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,799 DEBUG Processing 40/724 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,807 DEBUG Processing 3/708 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:11,883 DEBUG Processing 133/826 atomic regions from SNP 39732 to 40333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,978 DEBUG Processing 984/1108 atomic regions from SNP 294969 to 295569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,031 DEBUG Processing 41/724 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:12,045 DEBUG Processing 4/708 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:12,119 DEBUG Processing 134/826 atomic regions from SNP 40033 to 40634 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,267 DEBUG Processing 985/1108 atomic regions from SNP 295269 to 295869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,270 DEBUG Processing 42/724 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:12,282 DEBUG Processing 5/708 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:12,360 DEBUG Processing 135/826 atomic regions from SNP 40334 to 40935 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,504 DEBUG Processing 43/724 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:12,521 DEBUG Processing 6/708 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:12,560 DEBUG Processing 986/1108 atomic regions from SNP 295569 to 296169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,605 DEBUG Processing 136/826 atomic regions from SNP 40635 to 41236 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,731 DEBUG Processing 44/724 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:12,772 DEBUG Processing 7/708 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:12,854 DEBUG Processing 137/826 atomic regions from SNP 40936 to 41537 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,854 DEBUG Processing 987/1108 atomic regions from SNP 295869 to 296469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,958 DEBUG Processing 45/724 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:13,015 DEBUG Processing 8/708 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,108 DEBUG Processing 138/826 atomic regions from SNP 41237 to 41838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,143 DEBUG Processing 988/1108 atomic regions from SNP 296169 to 296769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,195 DEBUG Processing 46/724 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:13,240 DEBUG Processing 9/708 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,310 DEBUG Subchromosome time: 343.1086232699454, subchromosome SNPs: 299260 2025-01-31 09:46:13,313 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:13,347 DEBUG Processing 139/826 atomic regions from SNP 41538 to 42139 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,432 DEBUG Processing 989/1108 atomic regions from SNP 296469 to 297069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,435 DEBUG Processing 47/724 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:13,472 DEBUG Processing 10/708 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,580 DEBUG Processing 140/826 atomic regions from SNP 41839 to 42440 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,671 DEBUG Processing 48/724 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:13,712 DEBUG Processing 11/708 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,727 DEBUG Processing 990/1108 atomic regions from SNP 296769 to 297369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,828 DEBUG Processing 141/826 atomic regions from SNP 42140 to 42741 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,898 DEBUG Processing 49/724 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:13,944 DEBUG Processing 12/708 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,023 DEBUG Processing 991/1108 atomic regions from SNP 297069 to 297669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,083 DEBUG Processing 142/826 atomic regions from SNP 42441 to 43042 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,124 DEBUG Processing 50/724 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,171 DEBUG Processing 13/708 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,254 DEBUG Segmenting atomic regions: 2025-01-31 09:46:14,311 DEBUG Processing 992/1108 atomic regions from SNP 297369 to 297969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,352 DEBUG Processing 143/826 atomic regions from SNP 42742 to 43343 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,354 DEBUG Processing 51/724 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,395 DEBUG Processing 1/25 atomic regions from SNP 0 to 601 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:14,401 DEBUG Processing 14/708 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,589 DEBUG Processing 52/724 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,598 DEBUG Processing 993/1108 atomic regions from SNP 297669 to 298269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,612 DEBUG Processing 144/826 atomic regions from SNP 43043 to 43644 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,634 DEBUG Processing 15/708 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,667 DEBUG Processing 2/25 atomic regions from SNP 301 to 902 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:14,820 DEBUG Processing 53/724 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,867 DEBUG Processing 16/708 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,868 DEBUG Processing 145/826 atomic regions from SNP 43344 to 43945 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,891 DEBUG Processing 994/1108 atomic regions from SNP 297969 to 298569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,941 DEBUG Processing 3/25 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:15,052 DEBUG Processing 54/724 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:15,097 DEBUG Processing 17/708 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:15,131 DEBUG Processing 146/826 atomic regions from SNP 43645 to 44246 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,189 DEBUG Processing 995/1108 atomic regions from SNP 298269 to 298869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,212 DEBUG Processing 4/25 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:15,285 DEBUG Processing 55/724 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:15,337 DEBUG Processing 18/708 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:15,391 DEBUG Processing 147/826 atomic regions from SNP 43946 to 44547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,475 DEBUG Processing 996/1108 atomic regions from SNP 298569 to 299169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,480 DEBUG Processing 5/25 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:15,519 DEBUG Processing 56/724 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:15,569 DEBUG Processing 19/708 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:15,636 DEBUG Processing 148/826 atomic regions from SNP 44247 to 44848 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,749 DEBUG Processing 57/724 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:15,749 DEBUG Processing 6/25 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:15,764 DEBUG Processing 997/1108 atomic regions from SNP 298869 to 299469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,797 DEBUG Processing 20/708 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:15,888 DEBUG Processing 149/826 atomic regions from SNP 44548 to 45149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,973 DEBUG Processing 58/724 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,017 DEBUG Processing 21/708 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,025 DEBUG Processing 7/25 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:16,047 DEBUG Processing 998/1108 atomic regions from SNP 299169 to 299769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,146 DEBUG Processing 150/826 atomic regions from SNP 44849 to 45450 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,202 DEBUG Processing 59/724 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,246 DEBUG Processing 22/708 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,306 DEBUG Processing 8/25 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:16,338 DEBUG Processing 999/1108 atomic regions from SNP 299469 to 300069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,388 DEBUG Processing 151/826 atomic regions from SNP 45150 to 45751 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,430 DEBUG Processing 60/724 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,473 DEBUG Processing 23/708 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,588 DEBUG Processing 9/25 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:16,625 DEBUG Processing 1000/1108 atomic regions from SNP 299769 to 300369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,640 DEBUG Processing 152/826 atomic regions from SNP 45451 to 46052 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,660 DEBUG Processing 61/724 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,691 DEBUG Processing 24/708 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,865 DEBUG Processing 10/25 atomic regions from SNP 2709 to 3309 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:16,894 DEBUG Processing 153/826 atomic regions from SNP 45752 to 46353 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,895 DEBUG Processing 62/724 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,921 DEBUG Processing 25/708 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,922 DEBUG Processing 1001/1108 atomic regions from SNP 300069 to 300669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,131 DEBUG Processing 63/724 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:17,144 DEBUG Processing 11/25 atomic regions from SNP 3009 to 3609 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:17,152 DEBUG Processing 154/826 atomic regions from SNP 46053 to 46654 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,157 DEBUG Processing 26/708 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:17,218 DEBUG Processing 1002/1108 atomic regions from SNP 300369 to 300969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,361 DEBUG Processing 64/724 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:17,387 DEBUG Processing 27/708 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:17,416 DEBUG Processing 12/25 atomic regions from SNP 3309 to 3909 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:17,422 DEBUG Processing 155/826 atomic regions from SNP 46354 to 46955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,510 DEBUG Processing 1003/1108 atomic regions from SNP 300669 to 301269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,581 DEBUG Processing 65/724 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:17,606 DEBUG Processing 28/708 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:17,677 DEBUG Processing 156/826 atomic regions from SNP 46655 to 47256 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,694 DEBUG Processing 13/25 atomic regions from SNP 3609 to 4209 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:17,805 DEBUG Processing 1004/1108 atomic regions from SNP 300969 to 301569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,812 DEBUG Processing 66/724 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:17,827 DEBUG Processing 29/708 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:17,930 DEBUG Processing 157/826 atomic regions from SNP 46956 to 47557 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,993 DEBUG Processing 14/25 atomic regions from SNP 3909 to 4509 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:18,049 DEBUG Processing 67/724 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:18,058 DEBUG Processing 30/708 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,136 DEBUG Processing 1005/1108 atomic regions from SNP 301269 to 301869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,191 DEBUG Processing 158/826 atomic regions from SNP 47257 to 47858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,283 DEBUG Processing 68/724 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:18,288 DEBUG Processing 31/708 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,317 DEBUG Processing 15/25 atomic regions from SNP 4209 to 4809 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:18,436 DEBUG Processing 159/826 atomic regions from SNP 47558 to 48159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,456 DEBUG Processing 1006/1108 atomic regions from SNP 301569 to 302169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,510 DEBUG Processing 32/708 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,511 DEBUG Processing 69/724 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:18,622 DEBUG Processing 16/25 atomic regions from SNP 4509 to 5109 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:18,684 DEBUG Processing 160/826 atomic regions from SNP 47859 to 48460 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,738 DEBUG Processing 33/708 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,745 DEBUG Processing 70/724 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:18,754 DEBUG Processing 1007/1108 atomic regions from SNP 301869 to 302469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,913 DEBUG Processing 17/25 atomic regions from SNP 4809 to 5409 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:18,939 DEBUG Processing 161/826 atomic regions from SNP 48160 to 48761 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,972 DEBUG Processing 34/708 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,978 DEBUG Segmenting atomic regions: 2025-01-31 09:46:18,981 DEBUG Processing 71/724 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,049 DEBUG Processing 1008/1108 atomic regions from SNP 302169 to 302769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,082 DEBUG Processing 1/686 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:19,198 DEBUG Processing 162/826 atomic regions from SNP 48461 to 49062 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,204 DEBUG Processing 18/25 atomic regions from SNP 5109 to 5709 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:19,205 DEBUG Processing 35/708 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:19,219 DEBUG Processing 72/724 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,319 DEBUG Processing 2/686 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:19,354 DEBUG Processing 1009/1108 atomic regions from SNP 302469 to 303069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,431 DEBUG Processing 36/708 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:19,451 DEBUG Processing 73/724 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,452 DEBUG Processing 163/826 atomic regions from SNP 48762 to 49363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,496 DEBUG Processing 19/25 atomic regions from SNP 5409 to 6009 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:19,557 DEBUG Processing 3/686 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:19,646 DEBUG Processing 1010/1108 atomic regions from SNP 302769 to 303369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,658 DEBUG Processing 37/708 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:19,680 DEBUG Processing 74/724 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,695 DEBUG Processing 164/826 atomic regions from SNP 49063 to 49664 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,781 DEBUG Processing 20/25 atomic regions from SNP 5709 to 6309 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:19,788 DEBUG Processing 4/686 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:19,888 DEBUG Processing 38/708 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:19,915 DEBUG Processing 75/724 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,940 DEBUG Processing 1011/1108 atomic regions from SNP 303069 to 303669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,941 DEBUG Processing 165/826 atomic regions from SNP 49364 to 49965 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,017 DEBUG Processing 5/686 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:20,073 DEBUG Processing 21/25 atomic regions from SNP 6009 to 6609 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:20,117 DEBUG Processing 39/708 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,147 DEBUG Processing 76/724 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:20,181 DEBUG Processing 166/826 atomic regions from SNP 49665 to 50266 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,232 DEBUG Processing 1012/1108 atomic regions from SNP 303369 to 303969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,273 DEBUG Processing 6/686 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:20,347 DEBUG Processing 40/708 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,365 DEBUG Processing 22/25 atomic regions from SNP 6309 to 6909 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:20,378 DEBUG Processing 77/724 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:20,424 DEBUG Processing 167/826 atomic regions from SNP 49966 to 50567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,520 DEBUG Processing 7/686 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:20,549 DEBUG Processing 1013/1108 atomic regions from SNP 303669 to 304269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,579 DEBUG Processing 41/708 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,614 DEBUG Processing 78/724 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:20,650 DEBUG Processing 23/25 atomic regions from SNP 6609 to 7209 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:20,667 DEBUG Processing 168/826 atomic regions from SNP 50267 to 50868 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,745 DEBUG Processing 8/686 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:20,808 DEBUG Processing 42/708 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,851 DEBUG Processing 79/724 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:20,863 DEBUG Processing 1014/1108 atomic regions from SNP 303969 to 304569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,910 DEBUG Processing 169/826 atomic regions from SNP 50568 to 51169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,948 DEBUG Processing 24/25 atomic regions from SNP 6909 to 7509 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:20,996 DEBUG Processing 9/686 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,023 DEBUG Processing 43/708 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,081 DEBUG Processing 80/724 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,153 DEBUG Processing 170/826 atomic regions from SNP 50869 to 51470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,172 DEBUG Processing 1015/1108 atomic regions from SNP 304269 to 304869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,240 DEBUG Processing 25/25 atomic regions from SNP 7209 to 7809 for chr2 (subchromosome 2 of 2). 2025-01-31 09:46:21,245 DEBUG Processing 44/708 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,247 DEBUG Processing 10/686 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,299 DEBUG Processing 81/724 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,370 DEBUG Unique SNPs positions in subchromosome 2: 7810 2025-01-31 09:46:21,380 DEBUG Subchromosome time: 8.067123357206583, subchromosome SNPs: 7810 2025-01-31 09:46:21,380 DEBUG Estimated BADs: [1.15, 0.58, 1.15, 3.46, 0.23, 2.31, 0.23, 0.58, 1.15, 0.58, 6.92, 1.15, 0.16, 2.31, 1.15, 0.14, 1.15, 0.58, 2.31, 1.15, 2.31, 1.15, 3.46, 1.15, 3.46, 1.15, 1.15, 4.61] SNP counts: [9092, 16614, 11697, 21470, 1058, 4364, 5857, 39588, 26385, 5313, 420, 1784, 5102, 4831, 5996, 6855, 12912, 18132, 6487, 8819, 7380, 36850, 9525, 10859, 8769, 13101, 3705, 4105] SNP IDs counts: [9092, 16614, 11697, 21470, 1058, 4364, 5857, 39588, 26385, 5313, 420, 1784, 5102, 4831, 5996, 6855, 12912, 18132, 6487, 8819, 7380, 36850, 9525, 10859, 8769, 13101, 3705, 4105] Critical gap: 735778bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 8.21Mbp, 18.02Mbp, 24.92Mbp, 36.26Mbp, 36.96Mbp, 39.37Mbp, 43.09Mbp, 66.67Mbp, 81.26Mbp, 84.65Mbp, 84.87Mbp, 85.92Mbp, 89.45Mbp, 92.37Mbp, 95.77Mbp, 100.88Mbp, 108.07Mbp, 118.65Mbp, 122.12Mbp, 127.21Mbp, 131.15Mbp, 152.33Mbp, 157.42Mbp, 163.33Mbp, 167.99Mbp, 175.18Mbp[1.52Mbp], 179.83Mbp, 182.11Mbp] 2025-01-31 09:46:21,380 DEBUG chr2 time: 8.06773503869772 s 2025-01-31 09:46:21,404 DEBUG Processing 171/826 atomic regions from SNP 51170 to 51771 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,470 DEBUG Processing 1016/1108 atomic regions from SNP 304569 to 305169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,476 DEBUG Processing 45/708 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,511 DEBUG Processing 11/686 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,521 DEBUG Processing 82/724 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,593 DEBUG chr2: Fitting background model for 28 segments 2025-01-31 09:46:21,657 DEBUG Processing 172/826 atomic regions from SNP 51471 to 52072 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,720 DEBUG Processing 46/708 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,757 DEBUG Processing 83/724 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,778 DEBUG Processing 12/686 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,788 DEBUG Processing 1017/1108 atomic regions from SNP 304869 to 305469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,912 DEBUG Processing 173/826 atomic regions from SNP 51772 to 52373 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,976 DEBUG Processing 47/708 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,999 DEBUG Processing 84/724 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:22,024 DEBUG Processing 13/686 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:22,112 DEBUG Processing 1018/1108 atomic regions from SNP 305169 to 305769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,163 DEBUG Processing 174/826 atomic regions from SNP 52073 to 52674 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,199 DEBUG Processing 48/708 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,232 DEBUG Processing 85/724 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:22,293 DEBUG Processing 14/686 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:22,415 DEBUG Processing 175/826 atomic regions from SNP 52374 to 52975 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,419 DEBUG Processing 49/708 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,425 DEBUG Processing 1019/1108 atomic regions from SNP 305469 to 306069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,455 DEBUG Processing 86/724 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:22,533 DEBUG Processing 15/686 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:22,651 DEBUG Processing 50/708 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,666 DEBUG Processing 176/826 atomic regions from SNP 52675 to 53276 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,691 DEBUG Processing 87/724 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:22,748 DEBUG Processing 1020/1108 atomic regions from SNP 305769 to 306369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,765 DEBUG Processing 16/686 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:22,881 DEBUG Processing 51/708 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,924 DEBUG Processing 177/826 atomic regions from SNP 52976 to 53577 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,926 DEBUG Processing 88/724 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,001 DEBUG Processing 17/686 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:23,075 DEBUG Processing 1021/1108 atomic regions from SNP 306069 to 306669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,105 DEBUG Processing 52/708 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:23,164 DEBUG Processing 89/724 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,193 DEBUG Processing 178/826 atomic regions from SNP 53277 to 53878 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,233 DEBUG Processing 18/686 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:23,329 DEBUG Processing 53/708 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:23,392 DEBUG Processing 90/724 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,392 DEBUG Processing 1022/1108 atomic regions from SNP 306369 to 306969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,451 DEBUG Processing 179/826 atomic regions from SNP 53578 to 54179 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,477 DEBUG Processing 19/686 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:23,554 DEBUG Processing 54/708 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:23,620 DEBUG Processing 91/724 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,705 DEBUG Processing 1023/1108 atomic regions from SNP 306669 to 307269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,712 DEBUG Processing 20/686 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:23,717 DEBUG Processing 180/826 atomic regions from SNP 53879 to 54480 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,778 DEBUG Processing 55/708 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:23,845 DEBUG Processing 92/724 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,955 DEBUG Processing 21/686 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:23,974 DEBUG Processing 181/826 atomic regions from SNP 54180 to 54781 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,003 DEBUG Processing 56/708 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,016 DEBUG Processing 1024/1108 atomic regions from SNP 306969 to 307569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,072 DEBUG Processing 93/724 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,219 DEBUG Processing 22/686 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:24,227 DEBUG Processing 182/826 atomic regions from SNP 54481 to 55082 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,248 DEBUG Processing 57/708 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,307 DEBUG Processing 94/724 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,318 DEBUG Processing 1025/1108 atomic regions from SNP 307269 to 307869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,481 DEBUG Processing 23/686 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:24,482 DEBUG Processing 183/826 atomic regions from SNP 54782 to 55383 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,483 DEBUG Processing 58/708 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,539 DEBUG Processing 95/724 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,612 DEBUG Processing 1026/1108 atomic regions from SNP 307569 to 308169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,711 DEBUG Processing 59/708 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,736 DEBUG Processing 184/826 atomic regions from SNP 55083 to 55684 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,743 DEBUG Processing 24/686 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:24,767 DEBUG Processing 96/724 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,898 DEBUG Processing 1027/1108 atomic regions from SNP 307869 to 308469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,935 DEBUG Processing 60/708 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,973 DEBUG Processing 25/686 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:24,987 DEBUG Processing 97/724 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,989 DEBUG Processing 185/826 atomic regions from SNP 55384 to 55985 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,185 DEBUG Processing 61/708 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,191 DEBUG Processing 1028/1108 atomic regions from SNP 308169 to 308769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,209 DEBUG Processing 26/686 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:25,225 DEBUG Processing 98/724 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:25,250 DEBUG Processing 186/826 atomic regions from SNP 55685 to 56286 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,416 DEBUG Processing 62/708 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,448 DEBUG Processing 27/686 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:25,457 DEBUG Processing 99/724 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:25,484 DEBUG Processing 1029/1108 atomic regions from SNP 308469 to 309069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,507 DEBUG Processing 187/826 atomic regions from SNP 55986 to 56587 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,648 DEBUG Processing 63/708 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,692 DEBUG Processing 100/724 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:25,706 DEBUG Processing 28/686 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:25,762 DEBUG Processing 188/826 atomic regions from SNP 56287 to 56888 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,775 DEBUG Processing 1030/1108 atomic regions from SNP 308769 to 309369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,871 DEBUG Processing 64/708 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,925 DEBUG Processing 101/724 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:25,970 DEBUG Processing 29/686 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:26,014 DEBUG Processing 189/826 atomic regions from SNP 56588 to 57189 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,053 DEBUG Processing 1031/1108 atomic regions from SNP 309069 to 309669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,087 DEBUG Processing 65/708 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:26,158 DEBUG Processing 102/724 atomic regions from SNP 30401 to 31002 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:26,208 DEBUG Processing 30/686 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:26,265 DEBUG Processing 190/826 atomic regions from SNP 56889 to 57490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,303 DEBUG Processing 66/708 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:26,336 DEBUG Processing 1032/1108 atomic regions from SNP 309369 to 309969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,381 DEBUG Processing 103/724 atomic regions from SNP 30702 to 31303 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:26,464 DEBUG Processing 31/686 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:26,519 DEBUG Processing 191/826 atomic regions from SNP 57190 to 57791 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,545 DEBUG Processing 67/708 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:26,598 DEBUG Processing 104/724 atomic regions from SNP 31003 to 31604 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:26,613 DEBUG Processing 1033/1108 atomic regions from SNP 309669 to 310269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,723 DEBUG Processing 32/686 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:26,775 DEBUG Processing 192/826 atomic regions from SNP 57491 to 58092 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,788 DEBUG Processing 68/708 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:26,822 DEBUG Processing 105/724 atomic regions from SNP 31304 to 31905 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:26,894 DEBUG Processing 1034/1108 atomic regions from SNP 309969 to 310569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,958 DEBUG Processing 33/686 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:27,008 DEBUG Processing 69/708 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:27,030 DEBUG Processing 193/826 atomic regions from SNP 57792 to 58393 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,049 DEBUG Processing 106/724 atomic regions from SNP 31605 to 32206 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:27,173 DEBUG Processing 1035/1108 atomic regions from SNP 310269 to 310869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,193 DEBUG Processing 34/686 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:27,233 DEBUG Processing 70/708 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:27,276 DEBUG Processing 107/724 atomic regions from SNP 31906 to 32507 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:27,287 DEBUG Processing 194/826 atomic regions from SNP 58093 to 58694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,435 DEBUG Processing 35/686 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:27,466 DEBUG Processing 71/708 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:27,480 DEBUG Processing 1036/1108 atomic regions from SNP 310569 to 311169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,516 DEBUG Processing 108/724 atomic regions from SNP 32207 to 32808 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:27,546 DEBUG Processing 195/826 atomic regions from SNP 58394 to 58995 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,665 DEBUG Processing 36/686 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:27,687 DEBUG Processing 72/708 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:27,744 DEBUG Processing 109/724 atomic regions from SNP 32508 to 33109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:27,791 DEBUG Processing 1037/1108 atomic regions from SNP 310869 to 311469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,806 DEBUG Processing 196/826 atomic regions from SNP 58695 to 59296 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,897 DEBUG Processing 37/686 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:27,911 DEBUG Processing 73/708 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:27,970 DEBUG Processing 110/724 atomic regions from SNP 32809 to 33409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:28,058 DEBUG Processing 197/826 atomic regions from SNP 58996 to 59597 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,072 DEBUG Processing 1038/1108 atomic regions from SNP 311169 to 311769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,129 DEBUG Processing 38/686 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:28,136 DEBUG Processing 74/708 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:28,200 DEBUG Processing 111/724 atomic regions from SNP 33109 to 33709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:28,331 DEBUG Processing 198/826 atomic regions from SNP 59297 to 59898 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,354 DEBUG Processing 1039/1108 atomic regions from SNP 311469 to 312069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,363 DEBUG Processing 39/686 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:28,364 DEBUG Processing 75/708 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:28,431 DEBUG Processing 112/724 atomic regions from SNP 33409 to 34009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:28,590 DEBUG Processing 76/708 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:28,603 DEBUG Processing 199/826 atomic regions from SNP 59598 to 60199 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,618 DEBUG Processing 40/686 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:28,644 DEBUG Processing 1040/1108 atomic regions from SNP 311769 to 312369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,664 DEBUG Processing 113/724 atomic regions from SNP 33709 to 34309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:28,814 DEBUG Processing 77/708 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:28,866 DEBUG Processing 41/686 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:28,877 DEBUG Processing 200/826 atomic regions from SNP 59899 to 60500 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,896 DEBUG Processing 114/724 atomic regions from SNP 34009 to 34609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:28,937 DEBUG Processing 1041/1108 atomic regions from SNP 312069 to 312669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,033 DEBUG Processing 78/708 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,122 DEBUG Processing 42/686 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:29,124 DEBUG Processing 115/724 atomic regions from SNP 34309 to 34909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:29,145 DEBUG Processing 201/826 atomic regions from SNP 60200 to 60801 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,229 DEBUG Processing 1042/1108 atomic regions from SNP 312369 to 312969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,255 DEBUG Processing 79/708 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,347 DEBUG Processing 116/724 atomic regions from SNP 34609 to 35209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:29,367 DEBUG Processing 43/686 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:29,412 DEBUG Processing 202/826 atomic regions from SNP 60501 to 61102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,483 DEBUG Processing 80/708 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,519 DEBUG Processing 1043/1108 atomic regions from SNP 312669 to 313269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,566 DEBUG Processing 117/724 atomic regions from SNP 34909 to 35509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:29,591 DEBUG Processing 44/686 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:29,649 DEBUG Processing 203/826 atomic regions from SNP 60802 to 61403 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,714 DEBUG Processing 81/708 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,791 DEBUG Processing 118/724 atomic regions from SNP 35209 to 35809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:29,809 DEBUG Processing 1044/1108 atomic regions from SNP 312969 to 313569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,821 DEBUG Processing 45/686 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:29,889 DEBUG Processing 204/826 atomic regions from SNP 61103 to 61704 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,930 DEBUG Processing 82/708 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:30,014 DEBUG Processing 119/724 atomic regions from SNP 35509 to 36109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:30,049 DEBUG Processing 46/686 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,116 DEBUG Processing 1045/1108 atomic regions from SNP 313269 to 313869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,139 DEBUG Processing 205/826 atomic regions from SNP 61404 to 62005 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,151 DEBUG Processing 83/708 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:30,232 DEBUG Processing 120/724 atomic regions from SNP 35809 to 36409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:30,273 DEBUG Processing 47/686 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,374 DEBUG Processing 84/708 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:30,390 DEBUG Processing 206/826 atomic regions from SNP 61705 to 62306 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,414 DEBUG Processing 1046/1108 atomic regions from SNP 313569 to 314169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,448 DEBUG Processing 121/724 atomic regions from SNP 36109 to 36709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:30,489 DEBUG Processing 48/686 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,597 DEBUG Processing 85/708 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:30,646 DEBUG Processing 207/826 atomic regions from SNP 62006 to 62607 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,671 DEBUG Processing 122/724 atomic regions from SNP 36409 to 37009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:30,700 DEBUG Processing 1047/1108 atomic regions from SNP 313869 to 314469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,712 DEBUG Processing 49/686 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,815 DEBUG Processing 86/708 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:30,897 DEBUG Processing 123/724 atomic regions from SNP 36709 to 37309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:30,899 DEBUG Processing 208/826 atomic regions from SNP 62307 to 62908 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,940 DEBUG Processing 50/686 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,999 DEBUG Processing 1048/1108 atomic regions from SNP 314169 to 314769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,026 DEBUG Processing 87/708 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,121 DEBUG Processing 124/724 atomic regions from SNP 37009 to 37609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:31,155 DEBUG Processing 209/826 atomic regions from SNP 62608 to 63209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,168 DEBUG Processing 51/686 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:31,243 DEBUG Processing 88/708 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,306 DEBUG Processing 1049/1108 atomic regions from SNP 314469 to 315069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,340 DEBUG Processing 125/724 atomic regions from SNP 37309 to 37909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:31,398 DEBUG Processing 52/686 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:31,399 DEBUG Processing 210/826 atomic regions from SNP 62909 to 63510 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,459 DEBUG Processing 89/708 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,569 DEBUG Processing 126/724 atomic regions from SNP 37609 to 38209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:31,592 DEBUG Processing 1050/1108 atomic regions from SNP 314769 to 315369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,628 DEBUG Processing 53/686 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:31,648 DEBUG Processing 211/826 atomic regions from SNP 63210 to 63811 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,674 DEBUG Processing 90/708 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,786 DEBUG Processing 127/724 atomic regions from SNP 37909 to 38509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:31,869 DEBUG Processing 54/686 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:31,869 DEBUG Processing 1051/1108 atomic regions from SNP 315069 to 315669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,898 DEBUG Processing 91/708 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,902 DEBUG Processing 212/826 atomic regions from SNP 63511 to 64112 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,997 DEBUG Processing 128/724 atomic regions from SNP 38209 to 38809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,099 DEBUG Processing 55/686 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,121 DEBUG Processing 92/708 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:32,152 DEBUG Processing 1052/1108 atomic regions from SNP 315369 to 315969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,155 DEBUG Processing 213/826 atomic regions from SNP 63812 to 64413 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,217 DEBUG Processing 129/724 atomic regions from SNP 38509 to 39109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,321 DEBUG Processing 56/686 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,335 DEBUG Processing 93/708 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:32,402 DEBUG Processing 214/826 atomic regions from SNP 64113 to 64714 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,434 DEBUG Processing 1053/1108 atomic regions from SNP 315669 to 316269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,441 DEBUG Processing 130/724 atomic regions from SNP 38809 to 39409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,540 DEBUG Processing 57/686 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,546 DEBUG Processing 94/708 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:32,642 DEBUG Processing 215/826 atomic regions from SNP 64414 to 65015 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,659 DEBUG Processing 131/724 atomic regions from SNP 39109 to 39709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,712 DEBUG Processing 1054/1108 atomic regions from SNP 315969 to 316569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,761 DEBUG Processing 95/708 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:32,761 DEBUG Processing 58/686 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,878 DEBUG Processing 132/724 atomic regions from SNP 39409 to 40009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,885 DEBUG Processing 216/826 atomic regions from SNP 64715 to 65316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,985 DEBUG Processing 96/708 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:32,990 DEBUG Processing 59/686 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,998 DEBUG Processing 1055/1108 atomic regions from SNP 316269 to 316869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,098 DEBUG Processing 133/724 atomic regions from SNP 39709 to 40309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:33,127 DEBUG Processing 217/826 atomic regions from SNP 65016 to 65617 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,213 DEBUG Processing 97/708 atomic regions from SNP 28896 to 29497 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,228 DEBUG Processing 60/686 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:33,284 DEBUG Processing 1056/1108 atomic regions from SNP 316569 to 317169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,317 DEBUG Processing 134/724 atomic regions from SNP 40009 to 40609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:33,366 DEBUG Processing 218/826 atomic regions from SNP 65317 to 65918 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,438 DEBUG Processing 98/708 atomic regions from SNP 29197 to 29798 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,466 DEBUG Processing 61/686 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:33,531 DEBUG Processing 135/724 atomic regions from SNP 40309 to 40909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:33,563 DEBUG Processing 1057/1108 atomic regions from SNP 316869 to 317469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,605 DEBUG Processing 219/826 atomic regions from SNP 65618 to 66219 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,664 DEBUG Processing 99/708 atomic regions from SNP 29498 to 30099 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,710 DEBUG Processing 62/686 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:33,759 DEBUG Processing 136/724 atomic regions from SNP 40609 to 41209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:33,836 DEBUG Processing 1058/1108 atomic regions from SNP 317169 to 317769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,843 DEBUG Processing 220/826 atomic regions from SNP 65919 to 66520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,876 DEBUG Processing 100/708 atomic regions from SNP 29799 to 30400 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,946 DEBUG Processing 63/686 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:33,988 DEBUG Processing 137/724 atomic regions from SNP 40909 to 41509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,084 DEBUG Processing 221/826 atomic regions from SNP 66220 to 66820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,086 DEBUG Processing 101/708 atomic regions from SNP 30100 to 30701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,111 DEBUG Processing 1059/1108 atomic regions from SNP 317469 to 318069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,168 DEBUG Processing 64/686 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:34,215 DEBUG Processing 138/724 atomic regions from SNP 41209 to 41809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,312 DEBUG Processing 102/708 atomic regions from SNP 30401 to 31002 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,336 DEBUG Processing 222/826 atomic regions from SNP 66520 to 67120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,391 DEBUG Processing 65/686 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:34,392 DEBUG Processing 1060/1108 atomic regions from SNP 317769 to 318369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,432 DEBUG Processing 139/724 atomic regions from SNP 41509 to 42109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,547 DEBUG Processing 103/708 atomic regions from SNP 30702 to 31303 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,595 DEBUG Processing 223/826 atomic regions from SNP 66820 to 67420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,629 DEBUG Processing 66/686 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:34,655 DEBUG Processing 140/724 atomic regions from SNP 41809 to 42409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,682 DEBUG Processing 1061/1108 atomic regions from SNP 318069 to 318669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,784 DEBUG Processing 104/708 atomic regions from SNP 31003 to 31604 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,853 DEBUG Processing 224/826 atomic regions from SNP 67120 to 67720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,870 DEBUG Processing 67/686 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:34,890 DEBUG Processing 141/724 atomic regions from SNP 42109 to 42709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,970 DEBUG Processing 1062/1108 atomic regions from SNP 318369 to 318969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,009 DEBUG Processing 105/708 atomic regions from SNP 31304 to 31905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:35,098 DEBUG Processing 225/826 atomic regions from SNP 67420 to 68020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,107 DEBUG Processing 68/686 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,128 DEBUG Processing 142/724 atomic regions from SNP 42409 to 43009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:35,233 DEBUG Processing 106/708 atomic regions from SNP 31605 to 32206 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:35,260 DEBUG Processing 1063/1108 atomic regions from SNP 318669 to 319269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,335 DEBUG Processing 69/686 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,344 DEBUG Processing 226/826 atomic regions from SNP 67720 to 68320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,350 DEBUG Processing 143/724 atomic regions from SNP 42709 to 43309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:35,458 DEBUG Processing 107/708 atomic regions from SNP 31906 to 32507 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:35,547 DEBUG Processing 1064/1108 atomic regions from SNP 318969 to 319569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,566 DEBUG Processing 144/724 atomic regions from SNP 43009 to 43609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:35,570 DEBUG Processing 70/686 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,590 DEBUG Processing 227/826 atomic regions from SNP 68020 to 68620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,679 DEBUG Processing 108/708 atomic regions from SNP 32207 to 32808 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:35,787 DEBUG Processing 145/724 atomic regions from SNP 43309 to 43909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:35,791 DEBUG Processing 71/686 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,826 DEBUG Processing 1065/1108 atomic regions from SNP 319269 to 319869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,834 DEBUG Processing 228/826 atomic regions from SNP 68320 to 68920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,894 DEBUG Processing 109/708 atomic regions from SNP 32508 to 33109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,007 DEBUG Processing 146/724 atomic regions from SNP 43609 to 44209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,016 DEBUG Processing 72/686 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:36,076 DEBUG Processing 229/826 atomic regions from SNP 68620 to 69220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,102 DEBUG Processing 1066/1108 atomic regions from SNP 319569 to 320169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,110 DEBUG Processing 110/708 atomic regions from SNP 32809 to 33410 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,222 DEBUG Processing 147/724 atomic regions from SNP 43909 to 44509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,236 DEBUG Processing 73/686 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:36,318 DEBUG Processing 230/826 atomic regions from SNP 68920 to 69520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,323 DEBUG Processing 111/708 atomic regions from SNP 33110 to 33711 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,376 DEBUG Processing 1067/1108 atomic regions from SNP 319869 to 320469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,447 DEBUG Processing 148/724 atomic regions from SNP 44209 to 44809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,463 DEBUG Processing 74/686 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:36,539 DEBUG Processing 112/708 atomic regions from SNP 33411 to 34012 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,555 DEBUG Processing 231/826 atomic regions from SNP 69220 to 69820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,656 DEBUG Processing 1068/1108 atomic regions from SNP 320169 to 320769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,673 DEBUG Processing 149/724 atomic regions from SNP 44509 to 45109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,695 DEBUG Processing 75/686 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:36,752 DEBUG Processing 113/708 atomic regions from SNP 33712 to 34313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,788 DEBUG Processing 232/826 atomic regions from SNP 69520 to 70120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,898 DEBUG Processing 150/724 atomic regions from SNP 44809 to 45409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,926 DEBUG Processing 76/686 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:36,936 DEBUG Processing 1069/1108 atomic regions from SNP 320469 to 321069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,971 DEBUG Processing 114/708 atomic regions from SNP 34013 to 34614 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,026 DEBUG Processing 233/826 atomic regions from SNP 69820 to 70420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,116 DEBUG Processing 151/724 atomic regions from SNP 45109 to 45709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,152 DEBUG Processing 77/686 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:37,196 DEBUG Processing 115/708 atomic regions from SNP 34314 to 34915 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,218 DEBUG Processing 1070/1108 atomic regions from SNP 320769 to 321369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,278 DEBUG Processing 234/826 atomic regions from SNP 70120 to 70720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,332 DEBUG Processing 152/724 atomic regions from SNP 45409 to 46009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,407 DEBUG Processing 116/708 atomic regions from SNP 34615 to 35216 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,411 DEBUG Processing 78/686 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:37,491 DEBUG Processing 1071/1108 atomic regions from SNP 321069 to 321669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,525 DEBUG Processing 235/826 atomic regions from SNP 70420 to 71020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,556 DEBUG Processing 153/724 atomic regions from SNP 45709 to 46309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,629 DEBUG Processing 117/708 atomic regions from SNP 34916 to 35517 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,637 DEBUG Processing 79/686 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:37,767 DEBUG Processing 1072/1108 atomic regions from SNP 321369 to 321969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,773 DEBUG Processing 236/826 atomic regions from SNP 70720 to 71320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,786 DEBUG Processing 154/724 atomic regions from SNP 46009 to 46609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,859 DEBUG Processing 118/708 atomic regions from SNP 35217 to 35818 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,877 DEBUG Processing 80/686 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,007 DEBUG Processing 155/724 atomic regions from SNP 46309 to 46909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,017 DEBUG Processing 237/826 atomic regions from SNP 71020 to 71620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,041 DEBUG Processing 1073/1108 atomic regions from SNP 321669 to 322269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,115 DEBUG Processing 81/686 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,116 DEBUG Processing 119/708 atomic regions from SNP 35518 to 36119 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,227 DEBUG Processing 156/724 atomic regions from SNP 46609 to 47209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,257 DEBUG Processing 238/826 atomic regions from SNP 71320 to 71920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,320 DEBUG Processing 1074/1108 atomic regions from SNP 321969 to 322569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,345 DEBUG Processing 82/686 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,348 DEBUG Processing 120/708 atomic regions from SNP 35819 to 36420 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,454 DEBUG Processing 157/724 atomic regions from SNP 46909 to 47509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,509 DEBUG Processing 239/826 atomic regions from SNP 71620 to 72220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,565 DEBUG Processing 121/708 atomic regions from SNP 36120 to 36721 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,572 DEBUG Processing 83/686 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,598 DEBUG Processing 1075/1108 atomic regions from SNP 322269 to 322869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,678 DEBUG Processing 158/724 atomic regions from SNP 47209 to 47809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,756 DEBUG Processing 240/826 atomic regions from SNP 71920 to 72520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,788 DEBUG Processing 122/708 atomic regions from SNP 36421 to 37022 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,799 DEBUG Processing 84/686 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,881 DEBUG Processing 1076/1108 atomic regions from SNP 322569 to 323169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,894 DEBUG Processing 159/724 atomic regions from SNP 47509 to 48109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:39,001 DEBUG Processing 241/826 atomic regions from SNP 72220 to 72820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,002 DEBUG Processing 123/708 atomic regions from SNP 36722 to 37323 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,023 DEBUG Processing 85/686 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:39,112 DEBUG Processing 160/724 atomic regions from SNP 47809 to 48409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:39,158 DEBUG Processing 1077/1108 atomic regions from SNP 322869 to 323469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,211 DEBUG Processing 124/708 atomic regions from SNP 37023 to 37624 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,240 DEBUG Processing 86/686 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:39,246 DEBUG Processing 242/826 atomic regions from SNP 72520 to 73120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,328 DEBUG Processing 161/724 atomic regions from SNP 48109 to 48709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:39,428 DEBUG Processing 125/708 atomic regions from SNP 37324 to 37925 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,439 DEBUG Processing 1078/1108 atomic regions from SNP 323169 to 323769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,465 DEBUG Processing 87/686 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:39,492 DEBUG Processing 243/826 atomic regions from SNP 72820 to 73420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,539 DEBUG Processing 162/724 atomic regions from SNP 48409 to 49009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:39,651 DEBUG Processing 126/708 atomic regions from SNP 37625 to 38226 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,695 DEBUG Processing 88/686 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:39,724 DEBUG Processing 1079/1108 atomic regions from SNP 323469 to 324069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,734 DEBUG Processing 244/826 atomic regions from SNP 73120 to 73720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,751 DEBUG Processing 163/724 atomic regions from SNP 48709 to 49309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:39,864 DEBUG Processing 127/708 atomic regions from SNP 37926 to 38527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,923 DEBUG Processing 89/686 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:39,971 DEBUG Processing 164/724 atomic regions from SNP 49009 to 49609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:39,974 DEBUG Processing 245/826 atomic regions from SNP 73420 to 74020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,002 DEBUG Processing 1080/1108 atomic regions from SNP 323769 to 324369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,090 DEBUG Processing 128/708 atomic regions from SNP 38227 to 38828 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:40,153 DEBUG Processing 90/686 atomic regions from SNP 26789 to 27390 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:40,195 DEBUG Processing 165/724 atomic regions from SNP 49309 to 49909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:40,213 DEBUG Processing 246/826 atomic regions from SNP 73720 to 74320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,276 DEBUG Processing 1081/1108 atomic regions from SNP 324069 to 324669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,316 DEBUG Processing 129/708 atomic regions from SNP 38528 to 39129 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:40,382 DEBUG Processing 91/686 atomic regions from SNP 27090 to 27691 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:40,421 DEBUG Processing 166/724 atomic regions from SNP 49609 to 50209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:40,456 DEBUG Processing 247/826 atomic regions from SNP 74020 to 74620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,534 DEBUG Processing 130/708 atomic regions from SNP 38829 to 39430 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:40,555 DEBUG Processing 1082/1108 atomic regions from SNP 324369 to 324969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,614 DEBUG Processing 92/686 atomic regions from SNP 27391 to 27992 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:40,648 DEBUG Processing 167/724 atomic regions from SNP 49909 to 50509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:40,705 DEBUG Processing 248/826 atomic regions from SNP 74320 to 74920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,748 DEBUG Processing 131/708 atomic regions from SNP 39130 to 39731 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:40,842 DEBUG Processing 93/686 atomic regions from SNP 27692 to 28293 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:40,845 DEBUG Processing 1083/1108 atomic regions from SNP 324669 to 325269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,869 DEBUG Processing 168/724 atomic regions from SNP 50209 to 50809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:40,960 DEBUG Processing 249/826 atomic regions from SNP 74620 to 75220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,965 DEBUG Processing 132/708 atomic regions from SNP 39431 to 40032 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,065 DEBUG Processing 94/686 atomic regions from SNP 27993 to 28594 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:41,086 DEBUG Processing 169/724 atomic regions from SNP 50509 to 51109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,141 DEBUG Processing 1084/1108 atomic regions from SNP 324969 to 325569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,181 DEBUG Processing 133/708 atomic regions from SNP 39732 to 40333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,240 DEBUG Processing 250/826 atomic regions from SNP 74920 to 75520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,288 DEBUG Processing 95/686 atomic regions from SNP 28294 to 28895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:41,305 DEBUG Processing 170/724 atomic regions from SNP 50809 to 51409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,391 DEBUG Processing 134/708 atomic regions from SNP 40033 to 40633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,439 DEBUG Processing 1085/1108 atomic regions from SNP 325269 to 325869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,511 DEBUG Processing 251/826 atomic regions from SNP 75220 to 75820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,515 DEBUG Processing 96/686 atomic regions from SNP 28595 to 29196 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:41,525 DEBUG Processing 171/724 atomic regions from SNP 51109 to 51709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,612 DEBUG Processing 135/708 atomic regions from SNP 40333 to 40933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,744 DEBUG Processing 97/686 atomic regions from SNP 28896 to 29497 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:41,744 DEBUG Processing 172/724 atomic regions from SNP 51409 to 52009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,754 DEBUG Processing 1086/1108 atomic regions from SNP 325569 to 326169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,763 DEBUG Processing 252/826 atomic regions from SNP 75520 to 76120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,830 DEBUG Processing 136/708 atomic regions from SNP 40633 to 41233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,964 DEBUG Processing 173/724 atomic regions from SNP 51709 to 52309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,972 DEBUG Processing 98/686 atomic regions from SNP 29197 to 29798 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,003 DEBUG Processing 253/826 atomic regions from SNP 75820 to 76420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,052 DEBUG Processing 137/708 atomic regions from SNP 40933 to 41533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:42,061 DEBUG Processing 1087/1108 atomic regions from SNP 325869 to 326469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,194 DEBUG Processing 174/724 atomic regions from SNP 52009 to 52609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:42,208 DEBUG Processing 99/686 atomic regions from SNP 29498 to 30099 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,239 DEBUG Processing 254/826 atomic regions from SNP 76120 to 76720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,273 DEBUG Processing 138/708 atomic regions from SNP 41233 to 41833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:42,351 DEBUG Processing 1088/1108 atomic regions from SNP 326169 to 326769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,425 DEBUG Processing 175/724 atomic regions from SNP 52309 to 52909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:42,448 DEBUG Processing 100/686 atomic regions from SNP 29799 to 30400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,493 DEBUG Processing 139/708 atomic regions from SNP 41533 to 42133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:42,496 DEBUG Processing 255/826 atomic regions from SNP 76420 to 77020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,649 DEBUG Processing 176/724 atomic regions from SNP 52609 to 53209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:42,654 DEBUG Processing 1089/1108 atomic regions from SNP 326469 to 327069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,679 DEBUG Processing 101/686 atomic regions from SNP 30100 to 30701 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,715 DEBUG Processing 140/708 atomic regions from SNP 41833 to 42433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:42,741 DEBUG Processing 256/826 atomic regions from SNP 76720 to 77320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,868 DEBUG Processing 177/724 atomic regions from SNP 52909 to 53509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:42,910 DEBUG Processing 102/686 atomic regions from SNP 30401 to 31002 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,936 DEBUG Processing 141/708 atomic regions from SNP 42133 to 42733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:42,960 DEBUG Processing 1090/1108 atomic regions from SNP 326769 to 327369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,985 DEBUG Processing 257/826 atomic regions from SNP 77020 to 77620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,087 DEBUG Processing 178/724 atomic regions from SNP 53209 to 53809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:43,139 DEBUG Processing 103/686 atomic regions from SNP 30702 to 31303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:43,156 DEBUG Processing 142/708 atomic regions from SNP 42433 to 43033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,251 DEBUG Processing 1091/1108 atomic regions from SNP 327069 to 327669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,253 DEBUG Processing 258/826 atomic regions from SNP 77320 to 77920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,305 DEBUG Processing 179/724 atomic regions from SNP 53509 to 54109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:43,374 DEBUG Processing 104/686 atomic regions from SNP 31003 to 31604 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:43,384 DEBUG Processing 143/708 atomic regions from SNP 42733 to 43333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,527 DEBUG Processing 180/724 atomic regions from SNP 53809 to 54409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:43,532 DEBUG Processing 259/826 atomic regions from SNP 77620 to 78220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,535 DEBUG Processing 1092/1108 atomic regions from SNP 327369 to 327969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,602 DEBUG Processing 105/686 atomic regions from SNP 31304 to 31905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:43,606 DEBUG Processing 144/708 atomic regions from SNP 43033 to 43633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,754 DEBUG Processing 181/724 atomic regions from SNP 54109 to 54709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:43,783 DEBUG Processing 260/826 atomic regions from SNP 77920 to 78520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,819 DEBUG Processing 1093/1108 atomic regions from SNP 327669 to 328269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,821 DEBUG Processing 145/708 atomic regions from SNP 43333 to 43933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,836 DEBUG Processing 106/686 atomic regions from SNP 31605 to 32206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:43,981 DEBUG Processing 182/724 atomic regions from SNP 54409 to 55009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,040 DEBUG Processing 261/826 atomic regions from SNP 78220 to 78820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,043 DEBUG Processing 146/708 atomic regions from SNP 43633 to 44233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,094 DEBUG Processing 107/686 atomic regions from SNP 31906 to 32507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:44,102 DEBUG Processing 1094/1108 atomic regions from SNP 327969 to 328569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,198 DEBUG Processing 183/724 atomic regions from SNP 54709 to 55309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,271 DEBUG Processing 147/708 atomic regions from SNP 43933 to 44533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,293 DEBUG Processing 262/826 atomic regions from SNP 78520 to 79120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,346 DEBUG Processing 108/686 atomic regions from SNP 32207 to 32808 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:44,386 DEBUG Processing 1095/1108 atomic regions from SNP 328269 to 328869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,409 DEBUG Processing 184/724 atomic regions from SNP 55009 to 55609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,489 DEBUG Processing 148/708 atomic regions from SNP 44233 to 44833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,537 DEBUG Processing 263/826 atomic regions from SNP 78820 to 79420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,620 DEBUG Processing 109/686 atomic regions from SNP 32508 to 33109 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:44,636 DEBUG Processing 185/724 atomic regions from SNP 55309 to 55909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,674 DEBUG Processing 1096/1108 atomic regions from SNP 328569 to 329169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,701 DEBUG Processing 149/708 atomic regions from SNP 44533 to 45133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,771 DEBUG Processing 264/826 atomic regions from SNP 79120 to 79720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,869 DEBUG Processing 186/724 atomic regions from SNP 55609 to 56209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,898 DEBUG Processing 110/686 atomic regions from SNP 32809 to 33410 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:44,925 DEBUG Processing 150/708 atomic regions from SNP 44833 to 45433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,965 DEBUG Processing 1097/1108 atomic regions from SNP 328869 to 329469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,007 DEBUG Processing 265/826 atomic regions from SNP 79420 to 80020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,090 DEBUG Processing 187/724 atomic regions from SNP 55909 to 56509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:45,155 DEBUG Processing 151/708 atomic regions from SNP 45133 to 45733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:45,171 DEBUG Processing 111/686 atomic regions from SNP 33110 to 33711 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:45,248 DEBUG Processing 1098/1108 atomic regions from SNP 329169 to 329769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,252 DEBUG Processing 266/826 atomic regions from SNP 79720 to 80320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,296 DEBUG Processing 188/724 atomic regions from SNP 56209 to 56809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:45,375 DEBUG Processing 152/708 atomic regions from SNP 45433 to 46033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:45,431 DEBUG Processing 112/686 atomic regions from SNP 33411 to 34012 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:45,498 DEBUG Processing 267/826 atomic regions from SNP 80020 to 80620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,513 DEBUG Processing 189/724 atomic regions from SNP 56509 to 57109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:45,531 DEBUG Processing 1099/1108 atomic regions from SNP 329469 to 330069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,583 DEBUG Processing 153/708 atomic regions from SNP 45733 to 46333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:45,697 DEBUG Processing 113/686 atomic regions from SNP 33712 to 34313 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:45,747 DEBUG Processing 190/724 atomic regions from SNP 56809 to 57409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:45,755 DEBUG Processing 268/826 atomic regions from SNP 80320 to 80920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,798 DEBUG Processing 154/708 atomic regions from SNP 46033 to 46633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:45,819 DEBUG Processing 1100/1108 atomic regions from SNP 329769 to 330369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,955 DEBUG Processing 114/686 atomic regions from SNP 34013 to 34614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:45,972 DEBUG Processing 191/724 atomic regions from SNP 57109 to 57709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,006 DEBUG Processing 269/826 atomic regions from SNP 80620 to 81220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,021 DEBUG Processing 155/708 atomic regions from SNP 46333 to 46933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,098 DEBUG Processing 1101/1108 atomic regions from SNP 330069 to 330669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,189 DEBUG Processing 192/724 atomic regions from SNP 57409 to 58009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,212 DEBUG Processing 115/686 atomic regions from SNP 34314 to 34915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,244 DEBUG Processing 156/708 atomic regions from SNP 46633 to 47233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,251 DEBUG Processing 270/826 atomic regions from SNP 80920 to 81520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,380 DEBUG Processing 1102/1108 atomic regions from SNP 330369 to 330969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,411 DEBUG Processing 193/724 atomic regions from SNP 57709 to 58309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,451 DEBUG Processing 116/686 atomic regions from SNP 34615 to 35216 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,461 DEBUG Processing 157/708 atomic regions from SNP 46933 to 47533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,493 DEBUG Processing 271/826 atomic regions from SNP 81220 to 81820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,640 DEBUG Processing 194/724 atomic regions from SNP 58009 to 58609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,666 DEBUG Processing 1103/1108 atomic regions from SNP 330669 to 331269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,682 DEBUG Processing 158/708 atomic regions from SNP 47233 to 47833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,682 DEBUG Processing 117/686 atomic regions from SNP 34916 to 35517 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,736 DEBUG Processing 272/826 atomic regions from SNP 81520 to 82120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,863 DEBUG Processing 195/724 atomic regions from SNP 58309 to 58909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,907 DEBUG Processing 159/708 atomic regions from SNP 47533 to 48133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,916 DEBUG Processing 118/686 atomic regions from SNP 35217 to 35818 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,951 DEBUG Processing 1104/1108 atomic regions from SNP 330969 to 331569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,983 DEBUG Processing 273/826 atomic regions from SNP 81820 to 82420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,083 DEBUG Processing 196/724 atomic regions from SNP 58609 to 59209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:47,127 DEBUG Processing 160/708 atomic regions from SNP 47833 to 48433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,147 DEBUG Processing 119/686 atomic regions from SNP 35518 to 36119 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:47,232 DEBUG Processing 274/826 atomic regions from SNP 82120 to 82720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,233 DEBUG Processing 1105/1108 atomic regions from SNP 331269 to 331869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,303 DEBUG Processing 197/724 atomic regions from SNP 58909 to 59509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:47,343 DEBUG Processing 161/708 atomic regions from SNP 48133 to 48733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,372 DEBUG Processing 120/686 atomic regions from SNP 35819 to 36420 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:47,478 DEBUG Processing 275/826 atomic regions from SNP 82420 to 83020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,516 DEBUG Processing 1106/1108 atomic regions from SNP 331569 to 332169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,538 DEBUG Processing 198/724 atomic regions from SNP 59209 to 59809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:47,572 DEBUG Processing 162/708 atomic regions from SNP 48433 to 49033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,609 DEBUG Processing 121/686 atomic regions from SNP 36120 to 36721 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:47,717 DEBUG Processing 276/826 atomic regions from SNP 82720 to 83320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,767 DEBUG Processing 199/724 atomic regions from SNP 59509 to 60109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:47,797 DEBUG Processing 163/708 atomic regions from SNP 48733 to 49333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,802 DEBUG Processing 1107/1108 atomic regions from SNP 331869 to 332469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,841 DEBUG Processing 122/686 atomic regions from SNP 36421 to 37022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:47,965 DEBUG Processing 277/826 atomic regions from SNP 83020 to 83620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,987 DEBUG Processing 200/724 atomic regions from SNP 59809 to 60409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:48,023 DEBUG Processing 164/708 atomic regions from SNP 49033 to 49633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:48,079 DEBUG Processing 123/686 atomic regions from SNP 36722 to 37323 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:48,088 DEBUG Processing 1108/1108 atomic regions from SNP 332169 to 332769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,209 DEBUG Processing 201/724 atomic regions from SNP 60109 to 60709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:48,220 DEBUG Processing 278/826 atomic regions from SNP 83320 to 83920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,232 DEBUG Unique SNPs positions in subchromosome 1: 332770 2025-01-31 09:46:48,253 DEBUG Processing 165/708 atomic regions from SNP 49333 to 49933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:48,322 DEBUG Processing 124/686 atomic regions from SNP 37023 to 37624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:48,427 DEBUG Processing 202/724 atomic regions from SNP 60409 to 61009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:48,468 DEBUG Processing 166/708 atomic regions from SNP 49633 to 50233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:48,472 DEBUG Processing 279/826 atomic regions from SNP 83620 to 84220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,543 DEBUG Processing 125/686 atomic regions from SNP 37324 to 37925 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:48,646 DEBUG Processing 203/724 atomic regions from SNP 60709 to 61309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:48,687 DEBUG Processing 167/708 atomic regions from SNP 49933 to 50533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:48,716 DEBUG Processing 280/826 atomic regions from SNP 83920 to 84520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,764 DEBUG Processing 126/686 atomic regions from SNP 37625 to 38226 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:48,860 DEBUG Processing 204/724 atomic regions from SNP 61009 to 61609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:48,902 DEBUG Processing 168/708 atomic regions from SNP 50233 to 50833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:48,954 DEBUG Processing 281/826 atomic regions from SNP 84220 to 84820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,994 DEBUG Processing 127/686 atomic regions from SNP 37926 to 38527 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,072 DEBUG Processing 205/724 atomic regions from SNP 61309 to 61909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,112 DEBUG Processing 169/708 atomic regions from SNP 50533 to 51133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,190 DEBUG Processing 282/826 atomic regions from SNP 84520 to 85120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,223 DEBUG Processing 128/686 atomic regions from SNP 38227 to 38828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,293 DEBUG Processing 206/724 atomic regions from SNP 61609 to 62209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,327 DEBUG Processing 170/708 atomic regions from SNP 50833 to 51433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,431 DEBUG Processing 283/826 atomic regions from SNP 84820 to 85420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,446 DEBUG Processing 129/686 atomic regions from SNP 38528 to 39129 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,515 DEBUG Processing 207/724 atomic regions from SNP 61909 to 62509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,542 DEBUG Processing 171/708 atomic regions from SNP 51133 to 51733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,658 DEBUG Processing 130/686 atomic regions from SNP 38829 to 39430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,677 DEBUG Processing 284/826 atomic regions from SNP 85120 to 85720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,736 DEBUG Processing 208/724 atomic regions from SNP 62209 to 62809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,761 DEBUG Processing 172/708 atomic regions from SNP 51433 to 52033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,879 DEBUG Processing 131/686 atomic regions from SNP 39130 to 39731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,929 DEBUG Processing 285/826 atomic regions from SNP 85420 to 86020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,960 DEBUG Processing 209/724 atomic regions from SNP 62509 to 63109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,976 DEBUG Processing 173/708 atomic regions from SNP 51733 to 52333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,108 DEBUG Processing 132/686 atomic regions from SNP 39431 to 40032 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:50,187 DEBUG Processing 286/826 atomic regions from SNP 85720 to 86320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,196 DEBUG Processing 174/708 atomic regions from SNP 52033 to 52633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,201 DEBUG Processing 210/724 atomic regions from SNP 62809 to 63409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:50,344 DEBUG Processing 133/686 atomic regions from SNP 39732 to 40333 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:50,414 DEBUG Processing 175/708 atomic regions from SNP 52333 to 52933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,441 DEBUG Processing 287/826 atomic regions from SNP 86020 to 86620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,445 DEBUG Processing 211/724 atomic regions from SNP 63109 to 63709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:50,564 DEBUG Processing 134/686 atomic regions from SNP 40033 to 40634 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:50,640 DEBUG Processing 176/708 atomic regions from SNP 52633 to 53233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,674 DEBUG Processing 212/724 atomic regions from SNP 63409 to 64009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:50,690 DEBUG Processing 288/826 atomic regions from SNP 86320 to 86920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,777 DEBUG Processing 135/686 atomic regions from SNP 40334 to 40935 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:50,855 DEBUG Processing 177/708 atomic regions from SNP 52933 to 53533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,900 DEBUG Processing 213/724 atomic regions from SNP 63709 to 64309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:50,945 DEBUG Processing 289/826 atomic regions from SNP 86620 to 87220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,997 DEBUG Processing 136/686 atomic regions from SNP 40635 to 41236 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:51,059 DEBUG Processing 178/708 atomic regions from SNP 53233 to 53833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:51,113 DEBUG Processing 214/724 atomic regions from SNP 64009 to 64609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,196 DEBUG Processing 290/826 atomic regions from SNP 86920 to 87520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,227 DEBUG Processing 137/686 atomic regions from SNP 40936 to 41537 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:51,269 DEBUG Processing 179/708 atomic regions from SNP 53533 to 54133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:51,320 DEBUG Processing 215/724 atomic regions from SNP 64309 to 64909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,444 DEBUG Processing 291/826 atomic regions from SNP 87220 to 87820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,459 DEBUG Processing 138/686 atomic regions from SNP 41237 to 41838 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:51,490 DEBUG Processing 180/708 atomic regions from SNP 53833 to 54433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:51,531 DEBUG Processing 216/724 atomic regions from SNP 64609 to 65209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,686 DEBUG Processing 139/686 atomic regions from SNP 41538 to 42139 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:51,712 DEBUG Processing 292/826 atomic regions from SNP 87520 to 88120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,714 DEBUG Processing 181/708 atomic regions from SNP 54133 to 54733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:51,753 DEBUG Processing 217/724 atomic regions from SNP 64909 to 65509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,905 DEBUG Processing 140/686 atomic regions from SNP 41839 to 42440 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:51,929 DEBUG Processing 182/708 atomic regions from SNP 54433 to 55033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:51,967 DEBUG Processing 293/826 atomic regions from SNP 87820 to 88420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,973 DEBUG Processing 218/724 atomic regions from SNP 65209 to 65809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:52,119 DEBUG Processing 141/686 atomic regions from SNP 42140 to 42741 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:52,139 DEBUG Processing 183/708 atomic regions from SNP 54733 to 55333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,190 DEBUG Processing 219/724 atomic regions from SNP 65509 to 66109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:52,213 DEBUG Processing 294/826 atomic regions from SNP 88120 to 88720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,339 DEBUG Processing 142/686 atomic regions from SNP 42441 to 43042 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:52,352 DEBUG Processing 184/708 atomic regions from SNP 55033 to 55633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,400 DEBUG Processing 220/724 atomic regions from SNP 65809 to 66409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:52,450 DEBUG Processing 295/826 atomic regions from SNP 88420 to 89020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,564 DEBUG Processing 143/686 atomic regions from SNP 42742 to 43343 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:52,571 DEBUG Processing 185/708 atomic regions from SNP 55333 to 55933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,618 DEBUG Processing 221/724 atomic regions from SNP 66109 to 66709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:52,688 DEBUG Processing 296/826 atomic regions from SNP 88720 to 89320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,791 DEBUG Processing 144/686 atomic regions from SNP 43043 to 43644 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:52,794 DEBUG Processing 186/708 atomic regions from SNP 55633 to 56233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,848 DEBUG Processing 222/724 atomic regions from SNP 66409 to 67009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:52,932 DEBUG Processing 297/826 atomic regions from SNP 89020 to 89620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,010 DEBUG Processing 145/686 atomic regions from SNP 43344 to 43945 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,014 DEBUG Processing 187/708 atomic regions from SNP 55933 to 56533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:53,093 DEBUG Processing 223/724 atomic regions from SNP 66709 to 67309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:53,188 DEBUG Processing 298/826 atomic regions from SNP 89320 to 89920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,222 DEBUG Processing 188/708 atomic regions from SNP 56233 to 56833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:53,225 DEBUG Processing 146/686 atomic regions from SNP 43645 to 44246 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,322 DEBUG Processing 224/724 atomic regions from SNP 67009 to 67609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:53,431 DEBUG Processing 299/826 atomic regions from SNP 89620 to 90220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,440 DEBUG Processing 189/708 atomic regions from SNP 56533 to 57133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:53,451 DEBUG Processing 147/686 atomic regions from SNP 43946 to 44547 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,553 DEBUG Processing 225/724 atomic regions from SNP 67309 to 67909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:53,670 DEBUG Processing 190/708 atomic regions from SNP 56833 to 57433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:53,676 DEBUG Processing 300/826 atomic regions from SNP 89920 to 90520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,688 DEBUG Processing 148/686 atomic regions from SNP 44247 to 44848 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,771 DEBUG Processing 226/724 atomic regions from SNP 67609 to 68209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:53,889 DEBUG Processing 191/708 atomic regions from SNP 57133 to 57733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:53,923 DEBUG Processing 149/686 atomic regions from SNP 44548 to 45149 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,932 DEBUG Processing 301/826 atomic regions from SNP 90220 to 90820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,006 DEBUG Processing 227/724 atomic regions from SNP 67909 to 68509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,102 DEBUG Processing 192/708 atomic regions from SNP 57433 to 58033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:54,142 DEBUG Processing 150/686 atomic regions from SNP 44849 to 45450 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,176 DEBUG Processing 302/826 atomic regions from SNP 90520 to 91120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,232 DEBUG Processing 228/724 atomic regions from SNP 68209 to 68809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,324 DEBUG Processing 193/708 atomic regions from SNP 57733 to 58333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:54,366 DEBUG Processing 151/686 atomic regions from SNP 45150 to 45751 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,422 DEBUG Processing 303/826 atomic regions from SNP 90820 to 91420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,440 DEBUG Processing 229/724 atomic regions from SNP 68509 to 69109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,549 DEBUG Processing 194/708 atomic regions from SNP 58033 to 58633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:54,601 DEBUG Processing 152/686 atomic regions from SNP 45451 to 46052 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,660 DEBUG Processing 230/724 atomic regions from SNP 68809 to 69409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,676 DEBUG Processing 304/826 atomic regions from SNP 91120 to 91720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,769 DEBUG Processing 195/708 atomic regions from SNP 58333 to 58933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:54,834 DEBUG Processing 153/686 atomic regions from SNP 45752 to 46353 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,905 DEBUG Processing 231/724 atomic regions from SNP 69109 to 69709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,931 DEBUG Processing 305/826 atomic regions from SNP 91420 to 92020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,980 DEBUG Processing 196/708 atomic regions from SNP 58633 to 59233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,055 DEBUG Processing 154/686 atomic regions from SNP 46053 to 46654 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:55,136 DEBUG Processing 232/724 atomic regions from SNP 69409 to 70009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:55,180 DEBUG Processing 306/826 atomic regions from SNP 91720 to 92320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,198 DEBUG Processing 197/708 atomic regions from SNP 58933 to 59533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,272 DEBUG Processing 155/686 atomic regions from SNP 46354 to 46955 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:55,355 DEBUG Processing 233/724 atomic regions from SNP 69709 to 70309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:55,421 DEBUG Processing 307/826 atomic regions from SNP 92020 to 92620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,421 DEBUG Processing 198/708 atomic regions from SNP 59233 to 59833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,499 DEBUG Processing 156/686 atomic regions from SNP 46655 to 47256 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:55,566 DEBUG Processing 234/724 atomic regions from SNP 70009 to 70609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:55,639 DEBUG Processing 199/708 atomic regions from SNP 59533 to 60133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,652 DEBUG Processing 308/826 atomic regions from SNP 92320 to 92920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,731 DEBUG Processing 157/686 atomic regions from SNP 46956 to 47557 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:55,786 DEBUG Processing 235/724 atomic regions from SNP 70309 to 70909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:55,853 DEBUG Processing 200/708 atomic regions from SNP 59833 to 60433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,900 DEBUG Processing 309/826 atomic regions from SNP 92620 to 93220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,961 DEBUG Processing 158/686 atomic regions from SNP 47257 to 47858 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,010 DEBUG Processing 236/724 atomic regions from SNP 70609 to 71209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,069 DEBUG Processing 201/708 atomic regions from SNP 60133 to 60733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:56,145 DEBUG Processing 310/826 atomic regions from SNP 92920 to 93520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,186 DEBUG Processing 159/686 atomic regions from SNP 47558 to 48159 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,233 DEBUG Processing 237/724 atomic regions from SNP 70909 to 71509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,290 DEBUG Processing 202/708 atomic regions from SNP 60433 to 61033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:56,388 DEBUG Processing 311/826 atomic regions from SNP 93220 to 93820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,408 DEBUG Processing 160/686 atomic regions from SNP 47859 to 48460 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,451 DEBUG Processing 238/724 atomic regions from SNP 71209 to 71809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,511 DEBUG Processing 203/708 atomic regions from SNP 60733 to 61333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:56,632 DEBUG Processing 312/826 atomic regions from SNP 93520 to 94120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,632 DEBUG Processing 161/686 atomic regions from SNP 48160 to 48761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,668 DEBUG Processing 239/724 atomic regions from SNP 71509 to 72109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,726 DEBUG Processing 204/708 atomic regions from SNP 61033 to 61633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:56,862 DEBUG Processing 162/686 atomic regions from SNP 48461 to 49062 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,882 DEBUG Processing 313/826 atomic regions from SNP 93820 to 94420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,889 DEBUG Processing 240/724 atomic regions from SNP 71809 to 72409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,938 DEBUG Processing 205/708 atomic regions from SNP 61333 to 61933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,091 DEBUG Processing 163/686 atomic regions from SNP 48762 to 49363 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:57,114 DEBUG Processing 241/724 atomic regions from SNP 72109 to 72709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:57,142 DEBUG Processing 314/826 atomic regions from SNP 94120 to 94720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,155 DEBUG Processing 206/708 atomic regions from SNP 61633 to 62233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,370 DEBUG Processing 164/686 atomic regions from SNP 49063 to 49664 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:57,412 DEBUG Processing 242/724 atomic regions from SNP 72409 to 73009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:57,455 DEBUG Processing 207/708 atomic regions from SNP 61933 to 62533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,460 DEBUG Processing 315/826 atomic regions from SNP 94420 to 95020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,593 DEBUG Processing 165/686 atomic regions from SNP 49364 to 49965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:57,633 DEBUG Processing 243/724 atomic regions from SNP 72709 to 73309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:57,679 DEBUG Processing 208/708 atomic regions from SNP 62233 to 62833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,700 DEBUG Processing 316/826 atomic regions from SNP 94720 to 95320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,827 DEBUG Processing 166/686 atomic regions from SNP 49665 to 50266 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:57,854 DEBUG Processing 244/724 atomic regions from SNP 73009 to 73609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:57,893 DEBUG Processing 209/708 atomic regions from SNP 62533 to 63133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,933 DEBUG Processing 317/826 atomic regions from SNP 95020 to 95620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,057 DEBUG Processing 167/686 atomic regions from SNP 49966 to 50567 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:58,085 DEBUG Processing 245/724 atomic regions from SNP 73309 to 73909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:58,114 DEBUG Processing 210/708 atomic regions from SNP 62833 to 63433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:58,175 DEBUG Processing 318/826 atomic regions from SNP 95320 to 95920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,281 DEBUG Processing 168/686 atomic regions from SNP 50267 to 50868 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:58,306 DEBUG Processing 246/724 atomic regions from SNP 73609 to 74209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:58,336 DEBUG Processing 211/708 atomic regions from SNP 63133 to 63733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:58,421 DEBUG Processing 319/826 atomic regions from SNP 95620 to 96220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,510 DEBUG Processing 169/686 atomic regions from SNP 50568 to 51169 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:58,527 DEBUG Processing 247/724 atomic regions from SNP 73909 to 74509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:58,554 DEBUG Processing 212/708 atomic regions from SNP 63433 to 64033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:58,661 DEBUG Processing 320/826 atomic regions from SNP 95920 to 96520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,749 DEBUG Processing 170/686 atomic regions from SNP 50869 to 51470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:58,757 DEBUG Processing 248/724 atomic regions from SNP 74209 to 74809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:58,776 DEBUG Processing 213/708 atomic regions from SNP 63733 to 64333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:58,895 DEBUG Processing 321/826 atomic regions from SNP 96220 to 96820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,981 DEBUG Processing 171/686 atomic regions from SNP 51170 to 51770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:58,984 DEBUG Processing 249/724 atomic regions from SNP 74509 to 75109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,003 DEBUG Processing 214/708 atomic regions from SNP 64033 to 64633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,155 DEBUG Processing 322/826 atomic regions from SNP 96520 to 97120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,223 DEBUG Processing 250/724 atomic regions from SNP 74809 to 75409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,224 DEBUG Processing 172/686 atomic regions from SNP 51470 to 52070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:59,230 DEBUG Processing 215/708 atomic regions from SNP 64333 to 64933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,394 DEBUG Processing 323/826 atomic regions from SNP 96820 to 97420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,447 DEBUG Processing 251/724 atomic regions from SNP 75109 to 75709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,448 DEBUG Processing 216/708 atomic regions from SNP 64633 to 65233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,453 DEBUG Processing 173/686 atomic regions from SNP 51770 to 52370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:59,638 DEBUG Processing 324/826 atomic regions from SNP 97120 to 97720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,673 DEBUG Processing 217/708 atomic regions from SNP 64933 to 65533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,674 DEBUG Processing 252/724 atomic regions from SNP 75409 to 76009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,686 DEBUG Processing 174/686 atomic regions from SNP 52070 to 52670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:59,879 DEBUG Processing 325/826 atomic regions from SNP 97420 to 98020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,901 DEBUG Processing 253/724 atomic regions from SNP 75709 to 76309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,909 DEBUG Processing 218/708 atomic regions from SNP 65233 to 65833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,923 DEBUG Processing 175/686 atomic regions from SNP 52370 to 52970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,122 DEBUG Processing 326/826 atomic regions from SNP 97720 to 98320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,129 DEBUG Processing 254/724 atomic regions from SNP 76009 to 76609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:00,135 DEBUG Processing 219/708 atomic regions from SNP 65533 to 66133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:00,157 DEBUG Processing 176/686 atomic regions from SNP 52670 to 53270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,355 DEBUG Processing 255/724 atomic regions from SNP 76309 to 76909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:00,363 DEBUG Processing 220/708 atomic regions from SNP 65833 to 66433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:00,367 DEBUG Processing 327/826 atomic regions from SNP 98020 to 98620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,397 DEBUG Processing 177/686 atomic regions from SNP 52970 to 53570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,575 DEBUG Processing 256/724 atomic regions from SNP 76609 to 77209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:00,582 DEBUG Processing 221/708 atomic regions from SNP 66133 to 66733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:00,620 DEBUG Processing 328/826 atomic regions from SNP 98320 to 98920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,626 DEBUG Processing 178/686 atomic regions from SNP 53270 to 53870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,787 DEBUG Processing 257/724 atomic regions from SNP 76909 to 77509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:00,792 DEBUG Processing 222/708 atomic regions from SNP 66433 to 67033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:00,842 DEBUG Processing 179/686 atomic regions from SNP 53570 to 54170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,862 DEBUG Processing 329/826 atomic regions from SNP 98620 to 99220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,003 DEBUG Processing 258/724 atomic regions from SNP 77209 to 77809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,003 DEBUG Processing 223/708 atomic regions from SNP 66733 to 67333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,064 DEBUG Processing 180/686 atomic regions from SNP 53870 to 54470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:01,098 DEBUG Processing 330/826 atomic regions from SNP 98920 to 99520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,105 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:47:01,221 DEBUG Processing 224/708 atomic regions from SNP 67033 to 67633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,226 DEBUG Processing 259/724 atomic regions from SNP 77509 to 78109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,289 DEBUG Processing 181/686 atomic regions from SNP 54170 to 54770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:01,348 DEBUG Processing 331/826 atomic regions from SNP 99220 to 99820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,431 DEBUG Processing 225/708 atomic regions from SNP 67333 to 67933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,435 DEBUG Processing 260/724 atomic regions from SNP 77809 to 78409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,508 DEBUG Processing 182/686 atomic regions from SNP 54470 to 55070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:01,595 DEBUG Processing 332/826 atomic regions from SNP 99520 to 100120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,646 DEBUG Processing 226/708 atomic regions from SNP 67633 to 68233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,654 DEBUG Processing 261/724 atomic regions from SNP 78109 to 78709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,725 DEBUG Processing 183/686 atomic regions from SNP 54770 to 55370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:01,837 DEBUG Processing 333/826 atomic regions from SNP 99820 to 100420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,863 DEBUG Processing 227/708 atomic regions from SNP 67933 to 68533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,874 DEBUG Processing 262/724 atomic regions from SNP 78409 to 79009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,941 DEBUG Processing 184/686 atomic regions from SNP 55070 to 55670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,078 DEBUG Processing 228/708 atomic regions from SNP 68233 to 68833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,080 DEBUG Processing 334/826 atomic regions from SNP 100120 to 100720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,094 DEBUG Processing 263/724 atomic regions from SNP 78709 to 79309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:02,165 DEBUG Processing 185/686 atomic regions from SNP 55370 to 55970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,287 DEBUG Processing 229/708 atomic regions from SNP 68533 to 69133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,312 DEBUG Processing 264/724 atomic regions from SNP 79009 to 79609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:02,323 DEBUG Processing 335/826 atomic regions from SNP 100420 to 101020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,396 DEBUG Processing 186/686 atomic regions from SNP 55670 to 56270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,491 DEBUG Processing 230/708 atomic regions from SNP 68833 to 69433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,518 DEBUG Processing 265/724 atomic regions from SNP 79309 to 79909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:02,560 DEBUG Processing 336/826 atomic regions from SNP 100720 to 101320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,615 DEBUG Processing 187/686 atomic regions from SNP 55970 to 56570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,706 DEBUG Processing 231/708 atomic regions from SNP 69133 to 69733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,731 DEBUG Processing 266/724 atomic regions from SNP 79609 to 80209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:02,800 DEBUG Processing 337/826 atomic regions from SNP 101020 to 101620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,839 DEBUG Processing 188/686 atomic regions from SNP 56270 to 56870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,934 DEBUG Processing 232/708 atomic regions from SNP 69433 to 70033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,956 DEBUG Processing 267/724 atomic regions from SNP 79909 to 80509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,040 DEBUG Subchromosome time: 392.4004496075213, subchromosome SNPs: 332770 2025-01-31 09:47:03,041 DEBUG Estimated BADs: [0.53, 0.35, 2.13, 1.06, 7.45, 0.53, 1.06, 7.45, 1.06, 6.39, 1.06, 4.26, 2.13, 6.39, 0.53, 1.06, 0.27, 2.13, 1.06, 3.19, 1.06, 0.35, 1.06, 2.13, 1.06, 3.19, 2.13, 1.06, 4.26, 2.13] SNP counts: [22109, 27341, 11018, 8680, 130, 12753, 22313, 395, 16946, 2087, 18142, 1658, 12298, 436, 19620, 3933, 15427, 3170, 19611, 10130, 6524, 12630, 12130, 31377, 10440, 5488, 7600, 10267, 1940, 6177] SNP IDs counts: [22109, 27341, 11018, 8680, 130, 12753, 22313, 395, 16946, 2087, 18142, 1658, 12298, 436, 19620, 3933, 15427, 3170, 19611, 10130, 6524, 12630, 12130, 31377, 10440, 5488, 7600, 10267, 1940, 6177] Critical gap: 766332bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.62Mbp, 33.45Mbp, 39.38Mbp, 44.10Mbp, 44.17Mbp, 52.11Mbp, 64.53Mbp, 64.74Mbp, 74.24Mbp, 75.41Mbp, 86.14Mbp, 87.04Mbp, 93.60Mbp, 93.83Mbp, 105.99Mbp, 108.28Mbp, 118.31Mbp, 119.99Mbp, 130.98Mbp, 136.30Mbp, 140.15Mbp, 148.20Mbp, 155.02Mbp, 172.28Mbp, 178.30Mbp, 181.21Mbp, 185.40Mbp, 190.91Mbp, 191.95Mbp, 195.47Mbp] 2025-01-31 09:47:03,041 DEBUG chr1 time: 392.40105536580086 s 2025-01-31 09:47:03,044 DEBUG Processing 338/826 atomic regions from SNP 101320 to 101920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,051 DEBUG Processing 189/686 atomic regions from SNP 56570 to 57170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:03,153 DEBUG Processing 233/708 atomic regions from SNP 69733 to 70333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,180 DEBUG Processing 268/724 atomic regions from SNP 80209 to 80809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,260 DEBUG chr1: Fitting background model for 30 segments 2025-01-31 09:47:03,279 DEBUG Processing 190/686 atomic regions from SNP 56870 to 57470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:03,291 DEBUG Processing 339/826 atomic regions from SNP 101620 to 102220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,371 DEBUG Processing 234/708 atomic regions from SNP 70033 to 70633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,401 DEBUG Processing 269/724 atomic regions from SNP 80509 to 81109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,509 DEBUG Processing 191/686 atomic regions from SNP 57170 to 57770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:03,540 DEBUG Processing 340/826 atomic regions from SNP 101920 to 102520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,589 DEBUG Processing 235/708 atomic regions from SNP 70333 to 70933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,616 DEBUG Processing 270/724 atomic regions from SNP 80809 to 81409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,737 DEBUG Processing 192/686 atomic regions from SNP 57470 to 58070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:03,801 DEBUG Processing 341/826 atomic regions from SNP 102220 to 102820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,812 DEBUG Processing 236/708 atomic regions from SNP 70633 to 71233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,840 DEBUG Processing 271/724 atomic regions from SNP 81109 to 81709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,962 DEBUG Processing 193/686 atomic regions from SNP 57770 to 58370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,032 DEBUG Processing 237/708 atomic regions from SNP 70933 to 71533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,053 DEBUG Processing 342/826 atomic regions from SNP 102520 to 103120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,066 DEBUG Processing 272/724 atomic regions from SNP 81409 to 82009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:04,184 DEBUG Processing 194/686 atomic regions from SNP 58070 to 58670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,248 DEBUG Processing 238/708 atomic regions from SNP 71233 to 71833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,286 DEBUG Processing 273/724 atomic regions from SNP 81709 to 82309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:04,304 DEBUG Processing 343/826 atomic regions from SNP 102820 to 103420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,406 DEBUG Processing 195/686 atomic regions from SNP 58370 to 58970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,464 DEBUG Processing 239/708 atomic regions from SNP 71533 to 72133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,505 DEBUG Processing 274/724 atomic regions from SNP 82009 to 82609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:04,553 DEBUG Processing 344/826 atomic regions from SNP 103120 to 103720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,627 DEBUG Processing 196/686 atomic regions from SNP 58670 to 59270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,677 DEBUG Processing 240/708 atomic regions from SNP 71833 to 72433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,723 DEBUG Processing 275/724 atomic regions from SNP 82309 to 82909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:04,804 DEBUG Processing 345/826 atomic regions from SNP 103420 to 104020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,844 DEBUG Processing 197/686 atomic regions from SNP 58970 to 59570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,888 DEBUG Processing 241/708 atomic regions from SNP 72133 to 72733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,942 DEBUG Processing 276/724 atomic regions from SNP 82609 to 83209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,062 DEBUG Processing 346/826 atomic regions from SNP 103720 to 104320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,067 DEBUG Processing 198/686 atomic regions from SNP 59270 to 59870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:05,100 DEBUG Processing 242/708 atomic regions from SNP 72433 to 73033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:05,158 DEBUG Processing 277/724 atomic regions from SNP 82909 to 83509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,297 DEBUG Processing 199/686 atomic regions from SNP 59570 to 60170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:05,318 DEBUG Processing 347/826 atomic regions from SNP 104020 to 104620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,324 DEBUG Processing 243/708 atomic regions from SNP 72733 to 73333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:05,376 DEBUG Processing 278/724 atomic regions from SNP 83209 to 83809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,524 DEBUG Processing 200/686 atomic regions from SNP 59870 to 60470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:05,546 DEBUG Processing 244/708 atomic regions from SNP 73033 to 73633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:05,569 DEBUG Processing 348/826 atomic regions from SNP 104320 to 104920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,601 DEBUG Processing 279/724 atomic regions from SNP 83509 to 84109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,749 DEBUG Processing 201/686 atomic regions from SNP 60170 to 60770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:05,767 DEBUG Processing 245/708 atomic regions from SNP 73333 to 73933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:05,818 DEBUG Processing 349/826 atomic regions from SNP 104620 to 105220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,828 DEBUG Processing 280/724 atomic regions from SNP 83809 to 84409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,974 DEBUG Processing 202/686 atomic regions from SNP 60470 to 61070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:05,986 DEBUG Processing 246/708 atomic regions from SNP 73633 to 74233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,055 DEBUG Processing 281/724 atomic regions from SNP 84109 to 84709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,065 DEBUG Processing 350/826 atomic regions from SNP 104920 to 105520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,196 DEBUG Processing 203/686 atomic regions from SNP 60770 to 61370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:06,199 DEBUG Processing 247/708 atomic regions from SNP 73933 to 74533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,277 DEBUG Processing 282/724 atomic regions from SNP 84409 to 85009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,305 DEBUG Processing 351/826 atomic regions from SNP 105220 to 105820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,413 DEBUG Processing 248/708 atomic regions from SNP 74233 to 74833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,418 DEBUG Processing 204/686 atomic regions from SNP 61070 to 61670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:06,496 DEBUG Processing 283/724 atomic regions from SNP 84709 to 85309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,549 DEBUG Processing 352/826 atomic regions from SNP 105520 to 106120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,634 DEBUG Processing 249/708 atomic regions from SNP 74533 to 75133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,647 DEBUG Processing 205/686 atomic regions from SNP 61370 to 61970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:06,708 DEBUG Processing 284/724 atomic regions from SNP 85009 to 85609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,783 DEBUG Processing 353/826 atomic regions from SNP 105820 to 106420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,851 DEBUG Processing 250/708 atomic regions from SNP 74833 to 75433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,871 DEBUG Processing 206/686 atomic regions from SNP 61670 to 62270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:06,924 DEBUG Processing 285/724 atomic regions from SNP 85309 to 85909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:07,011 DEBUG Processing 354/826 atomic regions from SNP 106120 to 106720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,071 DEBUG Processing 251/708 atomic regions from SNP 75133 to 75733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,100 DEBUG Processing 207/686 atomic regions from SNP 61970 to 62570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:07,151 DEBUG Processing 286/724 atomic regions from SNP 85609 to 86209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:07,246 DEBUG Processing 355/826 atomic regions from SNP 106420 to 107020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,291 DEBUG Processing 252/708 atomic regions from SNP 75433 to 76033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,345 DEBUG Processing 208/686 atomic regions from SNP 62270 to 62870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:07,373 DEBUG Processing 287/724 atomic regions from SNP 85909 to 86509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:07,493 DEBUG Processing 356/826 atomic regions from SNP 106720 to 107320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,522 DEBUG Processing 253/708 atomic regions from SNP 75733 to 76333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,596 DEBUG Processing 209/686 atomic regions from SNP 62570 to 63170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:07,598 DEBUG Processing 288/724 atomic regions from SNP 86209 to 86809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:07,749 DEBUG Processing 357/826 atomic regions from SNP 107020 to 107620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,766 DEBUG Processing 254/708 atomic regions from SNP 76033 to 76633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,839 DEBUG Processing 289/724 atomic regions from SNP 86509 to 87109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:07,842 DEBUG Processing 210/686 atomic regions from SNP 62870 to 63470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:07,986 DEBUG Processing 358/826 atomic regions from SNP 107320 to 107920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,999 DEBUG Processing 255/708 atomic regions from SNP 76333 to 76933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,078 DEBUG Processing 290/724 atomic regions from SNP 86809 to 87409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,084 DEBUG Processing 211/686 atomic regions from SNP 63170 to 63770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:08,215 DEBUG Processing 256/708 atomic regions from SNP 76633 to 77233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,229 DEBUG Processing 359/826 atomic regions from SNP 107620 to 108220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,308 DEBUG Processing 291/724 atomic regions from SNP 87109 to 87709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,323 DEBUG Processing 212/686 atomic regions from SNP 63470 to 64070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:08,432 DEBUG Processing 257/708 atomic regions from SNP 76933 to 77533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,489 DEBUG Processing 360/826 atomic regions from SNP 107920 to 108520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,537 DEBUG Processing 292/724 atomic regions from SNP 87409 to 88009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,554 DEBUG Processing 213/686 atomic regions from SNP 63770 to 64370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:08,647 DEBUG Processing 258/708 atomic regions from SNP 77233 to 77833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,739 DEBUG Processing 361/826 atomic regions from SNP 108220 to 108820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,761 DEBUG Processing 293/724 atomic regions from SNP 87709 to 88309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,784 DEBUG Processing 214/686 atomic regions from SNP 64070 to 64670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:08,859 DEBUG Processing 259/708 atomic regions from SNP 77533 to 78133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,983 DEBUG Processing 294/724 atomic regions from SNP 88009 to 88609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,999 DEBUG Processing 362/826 atomic regions from SNP 108520 to 109120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,014 DEBUG Processing 215/686 atomic regions from SNP 64370 to 64970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:09,077 DEBUG Processing 260/708 atomic regions from SNP 77833 to 78433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,210 DEBUG Processing 295/724 atomic regions from SNP 88309 to 88909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:09,251 DEBUG Processing 363/826 atomic regions from SNP 108820 to 109420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,252 DEBUG Processing 216/686 atomic regions from SNP 64670 to 65270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:09,308 DEBUG Processing 261/708 atomic regions from SNP 78133 to 78733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,441 DEBUG Processing 296/724 atomic regions from SNP 88609 to 89209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:09,489 DEBUG Processing 217/686 atomic regions from SNP 64970 to 65570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:09,502 DEBUG Processing 364/826 atomic regions from SNP 109120 to 109720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,538 DEBUG Processing 262/708 atomic regions from SNP 78433 to 79033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,674 DEBUG Processing 297/724 atomic regions from SNP 88909 to 89509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:09,728 DEBUG Processing 218/686 atomic regions from SNP 65270 to 65870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:09,755 DEBUG Processing 365/826 atomic regions from SNP 109420 to 110020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,765 DEBUG Processing 263/708 atomic regions from SNP 78733 to 79333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,900 DEBUG Processing 298/724 atomic regions from SNP 89209 to 89809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:10,004 DEBUG Processing 219/686 atomic regions from SNP 65570 to 66170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,024 DEBUG Processing 264/708 atomic regions from SNP 79033 to 79633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:10,037 DEBUG Processing 366/826 atomic regions from SNP 109720 to 110320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,152 DEBUG Processing 299/724 atomic regions from SNP 89509 to 90109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:10,310 DEBUG Processing 220/686 atomic regions from SNP 65870 to 66470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,328 DEBUG Processing 265/708 atomic regions from SNP 79333 to 79933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:10,371 DEBUG Processing 367/826 atomic regions from SNP 110020 to 110620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,440 DEBUG Processing 300/724 atomic regions from SNP 89809 to 90409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:10,593 DEBUG Processing 221/686 atomic regions from SNP 66170 to 66770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,628 DEBUG Processing 266/708 atomic regions from SNP 79633 to 80233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:10,699 DEBUG Processing 368/826 atomic regions from SNP 110320 to 110920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,723 DEBUG Processing 301/724 atomic regions from SNP 90109 to 90709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:10,829 DEBUG Processing 222/686 atomic regions from SNP 66470 to 67070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,852 DEBUG Processing 267/708 atomic regions from SNP 79933 to 80533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:10,944 DEBUG Processing 369/826 atomic regions from SNP 110620 to 111220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,960 DEBUG Processing 302/724 atomic regions from SNP 90409 to 91009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:11,073 DEBUG Processing 223/686 atomic regions from SNP 66770 to 67370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:11,085 DEBUG Processing 268/708 atomic regions from SNP 80233 to 80833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:11,179 DEBUG Processing 303/724 atomic regions from SNP 90709 to 91309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:11,190 DEBUG Processing 370/826 atomic regions from SNP 110920 to 111520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,310 DEBUG Processing 224/686 atomic regions from SNP 67070 to 67670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:11,316 DEBUG Processing 269/708 atomic regions from SNP 80533 to 81133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:11,410 DEBUG Processing 304/724 atomic regions from SNP 91009 to 91609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:11,440 DEBUG Processing 371/826 atomic regions from SNP 111220 to 111820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,534 DEBUG Processing 225/686 atomic regions from SNP 67370 to 67970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:11,534 DEBUG Processing 270/708 atomic regions from SNP 80833 to 81433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:11,636 DEBUG Processing 305/724 atomic regions from SNP 91309 to 91909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:11,689 DEBUG Processing 372/826 atomic regions from SNP 111520 to 112120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,758 DEBUG Processing 271/708 atomic regions from SNP 81133 to 81733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:11,763 DEBUG Processing 226/686 atomic regions from SNP 67670 to 68270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:11,871 DEBUG Processing 306/724 atomic regions from SNP 91609 to 92209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:11,940 DEBUG Processing 373/826 atomic regions from SNP 111820 to 112420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,987 DEBUG Processing 272/708 atomic regions from SNP 81433 to 82033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:11,999 DEBUG Processing 227/686 atomic regions from SNP 67970 to 68570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,097 DEBUG Processing 307/724 atomic regions from SNP 91909 to 92509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,191 DEBUG Processing 374/826 atomic regions from SNP 112120 to 112720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,210 DEBUG Processing 273/708 atomic regions from SNP 81733 to 82333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:12,228 DEBUG Processing 228/686 atomic regions from SNP 68270 to 68870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,322 DEBUG Processing 308/724 atomic regions from SNP 92209 to 92809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,436 DEBUG Processing 274/708 atomic regions from SNP 82033 to 82633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:12,451 DEBUG Processing 375/826 atomic regions from SNP 112420 to 113020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,462 DEBUG Processing 229/686 atomic regions from SNP 68570 to 69170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,546 DEBUG Processing 309/724 atomic regions from SNP 92509 to 93109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,665 DEBUG Processing 275/708 atomic regions from SNP 82333 to 82933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:12,697 DEBUG Processing 230/686 atomic regions from SNP 68870 to 69470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,714 DEBUG Processing 376/826 atomic regions from SNP 112720 to 113320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,767 DEBUG Processing 310/724 atomic regions from SNP 92809 to 93409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,894 DEBUG Processing 276/708 atomic regions from SNP 82633 to 83233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:12,940 DEBUG Processing 231/686 atomic regions from SNP 69170 to 69770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,995 DEBUG Processing 311/724 atomic regions from SNP 93109 to 93709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,997 DEBUG Processing 377/826 atomic regions from SNP 113020 to 113620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,115 DEBUG Processing 277/708 atomic regions from SNP 82933 to 83533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:13,178 DEBUG Processing 232/686 atomic regions from SNP 69470 to 70070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:13,226 DEBUG Processing 312/724 atomic regions from SNP 93409 to 94009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,252 DEBUG Processing 378/826 atomic regions from SNP 113320 to 113920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,337 DEBUG Processing 278/708 atomic regions from SNP 83233 to 83833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:13,415 DEBUG Processing 233/686 atomic regions from SNP 69770 to 70370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:13,455 DEBUG Processing 313/724 atomic regions from SNP 93709 to 94309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,493 DEBUG Processing 379/826 atomic regions from SNP 113620 to 114220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,559 DEBUG Processing 279/708 atomic regions from SNP 83533 to 84133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:13,652 DEBUG Processing 234/686 atomic regions from SNP 70070 to 70670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:13,684 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:47:13,685 DEBUG chr14: Signal quantile: 0.994. signal threshold: 7. Best RMSEA: 0.033 2025-01-31 09:47:13,685 DEBUG Processing 314/724 atomic regions from SNP 94009 to 94609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,734 DEBUG Processing 380/826 atomic regions from SNP 113920 to 114520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,778 DEBUG Processing 280/708 atomic regions from SNP 83833 to 84433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:13,891 DEBUG Processing 235/686 atomic regions from SNP 70370 to 70970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:13,920 DEBUG Processing 315/724 atomic regions from SNP 94309 to 94909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,993 DEBUG Processing 381/826 atomic regions from SNP 114220 to 114820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,001 DEBUG Processing 281/708 atomic regions from SNP 84133 to 84733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:14,123 DEBUG Processing 236/686 atomic regions from SNP 70670 to 71270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:14,152 DEBUG Processing 316/724 atomic regions from SNP 94609 to 95209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,232 DEBUG Processing 282/708 atomic regions from SNP 84433 to 85033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:14,265 DEBUG Processing 382/826 atomic regions from SNP 114520 to 115120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,356 DEBUG Processing 237/686 atomic regions from SNP 70970 to 71570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:14,377 DEBUG Processing 317/724 atomic regions from SNP 94909 to 95509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,454 DEBUG Processing 283/708 atomic regions from SNP 84733 to 85333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:14,521 DEBUG Processing 383/826 atomic regions from SNP 114820 to 115420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,592 DEBUG Processing 238/686 atomic regions from SNP 71270 to 71870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:14,630 DEBUG Processing 318/724 atomic regions from SNP 95209 to 95809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,669 DEBUG Processing 284/708 atomic regions from SNP 85033 to 85633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:14,765 DEBUG Processing 384/826 atomic regions from SNP 115120 to 115720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,831 DEBUG Processing 239/686 atomic regions from SNP 71570 to 72170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:14,870 DEBUG Processing 319/724 atomic regions from SNP 95509 to 96109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,898 DEBUG Processing 285/708 atomic regions from SNP 85333 to 85933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,006 DEBUG Processing 385/826 atomic regions from SNP 115420 to 116020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,061 DEBUG Processing 240/686 atomic regions from SNP 71870 to 72470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:15,108 DEBUG Processing 320/724 atomic regions from SNP 95809 to 96409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,132 DEBUG Processing 286/708 atomic regions from SNP 85633 to 86233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,263 DEBUG Processing 386/826 atomic regions from SNP 115720 to 116320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,287 DEBUG Processing 241/686 atomic regions from SNP 72170 to 72770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:15,330 DEBUG Processing 321/724 atomic regions from SNP 96109 to 96709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,355 DEBUG Processing 287/708 atomic regions from SNP 85933 to 86533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,523 DEBUG Processing 242/686 atomic regions from SNP 72470 to 73070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:15,534 DEBUG Processing 387/826 atomic regions from SNP 116020 to 116620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,555 DEBUG Processing 322/724 atomic regions from SNP 96409 to 97009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,574 DEBUG Processing 288/708 atomic regions from SNP 86233 to 86833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,762 DEBUG Processing 243/686 atomic regions from SNP 72770 to 73370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:15,789 DEBUG Processing 323/724 atomic regions from SNP 96709 to 97309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,806 DEBUG Processing 289/708 atomic regions from SNP 86533 to 87133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,809 DEBUG Processing 388/826 atomic regions from SNP 116320 to 116920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,003 DEBUG Processing 244/686 atomic regions from SNP 73070 to 73670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:16,022 DEBUG Processing 324/724 atomic regions from SNP 97009 to 97609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,025 DEBUG chr14 total SNP count: 192016 2025-01-31 09:47:16,025 DEBUG chr14 length: 124902244 2025-01-31 09:47:16,025 DEBUG ----------------------------------------- 2025-01-31 09:47:16,025 INFO Processing SNPs in chr14 2025-01-31 09:47:16,044 DEBUG Processing 290/708 atomic regions from SNP 86833 to 87433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:16,068 DEBUG Processing 389/826 atomic regions from SNP 116620 to 117220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,231 DEBUG Processing 245/686 atomic regions from SNP 73370 to 73970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:16,247 DEBUG Processing 325/724 atomic regions from SNP 97309 to 97909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,268 DEBUG Processing 291/708 atomic regions from SNP 87133 to 87733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:16,317 DEBUG Processing 390/826 atomic regions from SNP 116920 to 117520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,336 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 132), (132, 192016)] 2025-01-31 09:47:16,423 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:16,440 DEBUG Segmenting atomic regions: 2025-01-31 09:47:16,461 DEBUG Processing 246/686 atomic regions from SNP 73670 to 74270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:16,470 DEBUG Processing 326/724 atomic regions from SNP 97609 to 98209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,491 DEBUG Processing 292/708 atomic regions from SNP 87433 to 88033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:16,527 DEBUG Processing 1/1 atomic regions from SNP 0 to 131 for chr14 (subchromosome 1 of 2). 2025-01-31 09:47:16,533 DEBUG Unique SNPs positions in subchromosome 1: 132 2025-01-31 09:47:16,533 DEBUG Subchromosome time: 0.11019089818000793, subchromosome SNPs: 132 2025-01-31 09:47:16,558 DEBUG Processing 391/826 atomic regions from SNP 117220 to 117820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,582 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:16,694 DEBUG Processing 247/686 atomic regions from SNP 73970 to 74570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:16,700 DEBUG Processing 327/724 atomic regions from SNP 97909 to 98509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,717 DEBUG Processing 293/708 atomic regions from SNP 87733 to 88333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:16,796 DEBUG Processing 392/826 atomic regions from SNP 117520 to 118120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,925 DEBUG Processing 248/686 atomic regions from SNP 74270 to 74870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:16,943 DEBUG Processing 328/724 atomic regions from SNP 98209 to 98809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,943 DEBUG Processing 294/708 atomic regions from SNP 88033 to 88633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,036 DEBUG Processing 393/826 atomic regions from SNP 117820 to 118420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,150 DEBUG Processing 249/686 atomic regions from SNP 74570 to 75170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,171 DEBUG Processing 329/724 atomic regions from SNP 98509 to 99109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,174 DEBUG Processing 295/708 atomic regions from SNP 88333 to 88933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,282 DEBUG Processing 394/826 atomic regions from SNP 118120 to 118720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,382 DEBUG Processing 250/686 atomic regions from SNP 74870 to 75470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,398 DEBUG Processing 296/708 atomic regions from SNP 88633 to 89233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,399 DEBUG Processing 330/724 atomic regions from SNP 98809 to 99409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,533 DEBUG Processing 395/826 atomic regions from SNP 118420 to 119020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,612 DEBUG Processing 251/686 atomic regions from SNP 75170 to 75770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,622 DEBUG Processing 297/708 atomic regions from SNP 88933 to 89533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,626 DEBUG Processing 331/724 atomic regions from SNP 99109 to 99709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,789 DEBUG Processing 396/826 atomic regions from SNP 118720 to 119320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,844 DEBUG Processing 252/686 atomic regions from SNP 75470 to 76070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,847 DEBUG Processing 298/708 atomic regions from SNP 89233 to 89833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,861 DEBUG Processing 332/724 atomic regions from SNP 99409 to 100009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,038 DEBUG Processing 397/826 atomic regions from SNP 119020 to 119620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,071 DEBUG Processing 299/708 atomic regions from SNP 89533 to 90133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:18,073 DEBUG Processing 253/686 atomic regions from SNP 75770 to 76370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:18,113 DEBUG Processing 333/724 atomic regions from SNP 99709 to 100309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,280 DEBUG Processing 398/826 atomic regions from SNP 119320 to 119920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,293 DEBUG Processing 300/708 atomic regions from SNP 89833 to 90433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:18,309 DEBUG Processing 254/686 atomic regions from SNP 76070 to 76670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:18,351 DEBUG Processing 334/724 atomic regions from SNP 100009 to 100609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,518 DEBUG Processing 301/708 atomic regions from SNP 90133 to 90733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:18,521 DEBUG Processing 399/826 atomic regions from SNP 119620 to 120220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,538 DEBUG Processing 255/686 atomic regions from SNP 76370 to 76970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:18,585 DEBUG Processing 335/724 atomic regions from SNP 100309 to 100909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,744 DEBUG Processing 302/708 atomic regions from SNP 90433 to 91033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:18,761 DEBUG Processing 400/826 atomic regions from SNP 119920 to 120520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,770 DEBUG Processing 256/686 atomic regions from SNP 76670 to 77270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:18,814 DEBUG Processing 336/724 atomic regions from SNP 100609 to 101209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,972 DEBUG Processing 303/708 atomic regions from SNP 90733 to 91333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,006 DEBUG Processing 257/686 atomic regions from SNP 76970 to 77570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,009 DEBUG Processing 401/826 atomic regions from SNP 120220 to 120820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,047 DEBUG Processing 337/724 atomic regions from SNP 100909 to 101509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,202 DEBUG Processing 304/708 atomic regions from SNP 91033 to 91633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,246 DEBUG Processing 258/686 atomic regions from SNP 77270 to 77870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,260 DEBUG Processing 402/826 atomic regions from SNP 120520 to 121120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,278 DEBUG Processing 338/724 atomic regions from SNP 101209 to 101809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,424 DEBUG Processing 305/708 atomic regions from SNP 91333 to 91933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,482 DEBUG Processing 259/686 atomic regions from SNP 77570 to 78170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,512 DEBUG Processing 403/826 atomic regions from SNP 120820 to 121420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,518 DEBUG Processing 339/724 atomic regions from SNP 101509 to 102109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,642 DEBUG Processing 306/708 atomic regions from SNP 91633 to 92233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,716 DEBUG Processing 260/686 atomic regions from SNP 77870 to 78470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,758 DEBUG Processing 404/826 atomic regions from SNP 121120 to 121720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,771 DEBUG Processing 340/724 atomic regions from SNP 101809 to 102409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,864 DEBUG Processing 307/708 atomic regions from SNP 91933 to 92533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,942 DEBUG Processing 261/686 atomic regions from SNP 78170 to 78770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,997 DEBUG Processing 341/724 atomic regions from SNP 102109 to 102709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,010 DEBUG Processing 405/826 atomic regions from SNP 121420 to 122020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,090 DEBUG Processing 308/708 atomic regions from SNP 92233 to 92833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:20,172 DEBUG Processing 262/686 atomic regions from SNP 78470 to 79070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:20,222 DEBUG Processing 342/724 atomic regions from SNP 102409 to 103009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,263 DEBUG Processing 406/826 atomic regions from SNP 121720 to 122320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,317 DEBUG Processing 309/708 atomic regions from SNP 92533 to 93133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:20,408 DEBUG Processing 263/686 atomic regions from SNP 78770 to 79370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:20,446 DEBUG Processing 343/724 atomic regions from SNP 102709 to 103309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,514 DEBUG Processing 407/826 atomic regions from SNP 122020 to 122620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,542 DEBUG Processing 310/708 atomic regions from SNP 92833 to 93433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:20,646 DEBUG Processing 264/686 atomic regions from SNP 79070 to 79670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:20,678 DEBUG Processing 344/724 atomic regions from SNP 103009 to 103609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,746 DEBUG Processing 408/826 atomic regions from SNP 122320 to 122920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,779 DEBUG Processing 311/708 atomic regions from SNP 93133 to 93733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:20,897 DEBUG Processing 265/686 atomic regions from SNP 79370 to 79970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:20,908 DEBUG Processing 345/724 atomic regions from SNP 103309 to 103909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,984 DEBUG Processing 409/826 atomic regions from SNP 122620 to 123220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,998 DEBUG Processing 312/708 atomic regions from SNP 93433 to 94033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,144 DEBUG Processing 346/724 atomic regions from SNP 103609 to 104209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,158 DEBUG Processing 266/686 atomic regions from SNP 79670 to 80270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:21,222 DEBUG Processing 313/708 atomic regions from SNP 93733 to 94333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,225 DEBUG Processing 410/826 atomic regions from SNP 122920 to 123520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,374 DEBUG Processing 347/724 atomic regions from SNP 103909 to 104509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,391 DEBUG Processing 267/686 atomic regions from SNP 79970 to 80570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:21,442 DEBUG Processing 314/708 atomic regions from SNP 94033 to 94633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,464 DEBUG Processing 411/826 atomic regions from SNP 123220 to 123820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,608 DEBUG Processing 348/724 atomic regions from SNP 104209 to 104809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,626 DEBUG Processing 268/686 atomic regions from SNP 80270 to 80870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:21,665 DEBUG Processing 315/708 atomic regions from SNP 94333 to 94933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,702 DEBUG Processing 412/826 atomic regions from SNP 123520 to 124120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,839 DEBUG Processing 349/724 atomic regions from SNP 104509 to 105109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,863 DEBUG Processing 269/686 atomic regions from SNP 80570 to 81170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:21,892 DEBUG Processing 316/708 atomic regions from SNP 94633 to 95233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,940 DEBUG Processing 413/826 atomic regions from SNP 123820 to 124420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,058 DEBUG Processing 350/724 atomic regions from SNP 104809 to 105409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,093 DEBUG Processing 270/686 atomic regions from SNP 80870 to 81470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,120 DEBUG Processing 317/708 atomic regions from SNP 94933 to 95533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,192 DEBUG Processing 414/826 atomic regions from SNP 124120 to 124720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,278 DEBUG Processing 351/724 atomic regions from SNP 105109 to 105709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,323 DEBUG Processing 271/686 atomic regions from SNP 81170 to 81770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,337 DEBUG Processing 318/708 atomic regions from SNP 95233 to 95833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,445 DEBUG Processing 415/826 atomic regions from SNP 124420 to 125020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,511 DEBUG Processing 352/724 atomic regions from SNP 105409 to 106009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,554 DEBUG Processing 272/686 atomic regions from SNP 81470 to 82070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,559 DEBUG Processing 319/708 atomic regions from SNP 95533 to 96133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,700 DEBUG Processing 416/826 atomic regions from SNP 124720 to 125320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,745 DEBUG Processing 353/724 atomic regions from SNP 105709 to 106309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,785 DEBUG Processing 320/708 atomic regions from SNP 95833 to 96433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,790 DEBUG Processing 273/686 atomic regions from SNP 81770 to 82370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,950 DEBUG Processing 417/826 atomic regions from SNP 125020 to 125620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,978 DEBUG Processing 354/724 atomic regions from SNP 106009 to 106609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,020 DEBUG Processing 321/708 atomic regions from SNP 96133 to 96733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,027 DEBUG Processing 274/686 atomic regions from SNP 82070 to 82670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:23,190 DEBUG Processing 418/826 atomic regions from SNP 125320 to 125920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,204 DEBUG Processing 355/724 atomic regions from SNP 106309 to 106909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,244 DEBUG Processing 322/708 atomic regions from SNP 96433 to 97033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,259 DEBUG Processing 275/686 atomic regions from SNP 82370 to 82970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:23,429 DEBUG Processing 356/724 atomic regions from SNP 106609 to 107209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,444 DEBUG Processing 419/826 atomic regions from SNP 125620 to 126220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,465 DEBUG Processing 323/708 atomic regions from SNP 96733 to 97333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,487 DEBUG Processing 276/686 atomic regions from SNP 82670 to 83270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:23,662 DEBUG Processing 357/724 atomic regions from SNP 106909 to 107509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,694 DEBUG Processing 324/708 atomic regions from SNP 97033 to 97633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,704 DEBUG Processing 420/826 atomic regions from SNP 125920 to 126520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,718 DEBUG Processing 277/686 atomic regions from SNP 82970 to 83570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:23,897 DEBUG Processing 358/724 atomic regions from SNP 107209 to 107809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,927 DEBUG Processing 325/708 atomic regions from SNP 97333 to 97933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,957 DEBUG Processing 278/686 atomic regions from SNP 83270 to 83870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:23,971 DEBUG Processing 421/826 atomic regions from SNP 126220 to 126820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,124 DEBUG Processing 359/724 atomic regions from SNP 107509 to 108109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,159 DEBUG Processing 326/708 atomic regions from SNP 97633 to 98233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,197 DEBUG Processing 279/686 atomic regions from SNP 83570 to 84170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:24,235 DEBUG Processing 422/826 atomic regions from SNP 126520 to 127120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,348 DEBUG Processing 360/724 atomic regions from SNP 107809 to 108409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,384 DEBUG Processing 327/708 atomic regions from SNP 97933 to 98533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,436 DEBUG Processing 280/686 atomic regions from SNP 83870 to 84470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:24,493 DEBUG Processing 423/826 atomic regions from SNP 126820 to 127420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,570 DEBUG Processing 361/724 atomic regions from SNP 108109 to 108709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,604 DEBUG Processing 328/708 atomic regions from SNP 98233 to 98833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,672 DEBUG Processing 281/686 atomic regions from SNP 84170 to 84770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:24,749 DEBUG Processing 424/826 atomic regions from SNP 127120 to 127720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,795 DEBUG Processing 362/724 atomic regions from SNP 108409 to 109009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,822 DEBUG Processing 329/708 atomic regions from SNP 98533 to 99133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,908 DEBUG Processing 282/686 atomic regions from SNP 84470 to 85070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:25,005 DEBUG Processing 425/826 atomic regions from SNP 127420 to 128020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,037 DEBUG Processing 363/724 atomic regions from SNP 108709 to 109309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,058 DEBUG Processing 330/708 atomic regions from SNP 98833 to 99433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,138 DEBUG Processing 283/686 atomic regions from SNP 84770 to 85370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:25,265 DEBUG Processing 426/826 atomic regions from SNP 127720 to 128320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,270 DEBUG Processing 364/724 atomic regions from SNP 109009 to 109609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,285 DEBUG Processing 331/708 atomic regions from SNP 99133 to 99733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,369 DEBUG Processing 284/686 atomic regions from SNP 85070 to 85670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:25,499 DEBUG Processing 365/724 atomic regions from SNP 109309 to 109909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,511 DEBUG Processing 332/708 atomic regions from SNP 99433 to 100033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,529 DEBUG Processing 427/826 atomic regions from SNP 128020 to 128620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,607 DEBUG Processing 285/686 atomic regions from SNP 85370 to 85970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:25,725 DEBUG Processing 366/724 atomic regions from SNP 109609 to 110209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,734 DEBUG Processing 333/708 atomic regions from SNP 99733 to 100333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,784 DEBUG Processing 428/826 atomic regions from SNP 128320 to 128920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,842 DEBUG Processing 286/686 atomic regions from SNP 85670 to 86270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:25,956 DEBUG Processing 367/724 atomic regions from SNP 109909 to 110509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,959 DEBUG Processing 334/708 atomic regions from SNP 100033 to 100633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,038 DEBUG Processing 429/826 atomic regions from SNP 128620 to 129220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,072 DEBUG Processing 287/686 atomic regions from SNP 85970 to 86570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:26,195 DEBUG Processing 335/708 atomic regions from SNP 100333 to 100933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,197 DEBUG Processing 368/724 atomic regions from SNP 110209 to 110809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,288 DEBUG Processing 430/826 atomic regions from SNP 128920 to 129520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,300 DEBUG Processing 288/686 atomic regions from SNP 86270 to 86870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:26,434 DEBUG Processing 336/708 atomic regions from SNP 100633 to 101233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,437 DEBUG Processing 369/724 atomic regions from SNP 110509 to 111109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,538 DEBUG Processing 289/686 atomic regions from SNP 86570 to 87170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:26,549 DEBUG Processing 431/826 atomic regions from SNP 129220 to 129820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,658 DEBUG Processing 337/708 atomic regions from SNP 100933 to 101533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,664 DEBUG Processing 370/724 atomic regions from SNP 110809 to 111409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,785 DEBUG Processing 290/686 atomic regions from SNP 86870 to 87470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:26,814 DEBUG Processing 432/826 atomic regions from SNP 129520 to 130120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,874 DEBUG Processing 338/708 atomic regions from SNP 101233 to 101833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,883 DEBUG Processing 371/724 atomic regions from SNP 111109 to 111709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,024 DEBUG Processing 291/686 atomic regions from SNP 87170 to 87770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:27,080 DEBUG Processing 433/826 atomic regions from SNP 129820 to 130420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,107 DEBUG Processing 339/708 atomic regions from SNP 101533 to 102133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,116 DEBUG Processing 372/724 atomic regions from SNP 111409 to 112009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,253 DEBUG Processing 292/686 atomic regions from SNP 87470 to 88070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:27,333 DEBUG Processing 434/826 atomic regions from SNP 130120 to 130720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,334 DEBUG Processing 340/708 atomic regions from SNP 101833 to 102433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,348 DEBUG Processing 373/724 atomic regions from SNP 111709 to 112309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,488 DEBUG Processing 293/686 atomic regions from SNP 87770 to 88370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:27,562 DEBUG Processing 341/708 atomic regions from SNP 102133 to 102733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,577 DEBUG Processing 374/724 atomic regions from SNP 112009 to 112609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,582 DEBUG Processing 435/826 atomic regions from SNP 130420 to 131020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,727 DEBUG Processing 294/686 atomic regions from SNP 88070 to 88670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:27,794 DEBUG Processing 342/708 atomic regions from SNP 102433 to 103033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,809 DEBUG Processing 375/724 atomic regions from SNP 112309 to 112909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,840 DEBUG Processing 436/826 atomic regions from SNP 130720 to 131320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,958 DEBUG Processing 295/686 atomic regions from SNP 88370 to 88970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:28,029 DEBUG Processing 343/708 atomic regions from SNP 102733 to 103333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,044 DEBUG Processing 376/724 atomic regions from SNP 112609 to 113209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,102 DEBUG Processing 437/826 atomic regions from SNP 131020 to 131620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,186 DEBUG Processing 296/686 atomic regions from SNP 88670 to 89270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:28,258 DEBUG Processing 344/708 atomic regions from SNP 103033 to 103633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,277 DEBUG Processing 377/724 atomic regions from SNP 112909 to 113509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,366 DEBUG Processing 438/826 atomic regions from SNP 131320 to 131920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,425 DEBUG Processing 297/686 atomic regions from SNP 88970 to 89570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:28,483 DEBUG Processing 345/708 atomic regions from SNP 103333 to 103933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,504 DEBUG Processing 378/724 atomic regions from SNP 113209 to 113809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,626 DEBUG Processing 439/826 atomic regions from SNP 131620 to 132220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,661 DEBUG Processing 298/686 atomic regions from SNP 89270 to 89870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:28,713 DEBUG Processing 346/708 atomic regions from SNP 103633 to 104233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,736 DEBUG Processing 379/724 atomic regions from SNP 113509 to 114109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,892 DEBUG Processing 440/826 atomic regions from SNP 131920 to 132520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,902 DEBUG Processing 299/686 atomic regions from SNP 89570 to 90170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:28,947 DEBUG Processing 347/708 atomic regions from SNP 103933 to 104533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,969 DEBUG Processing 380/724 atomic regions from SNP 113809 to 114409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,148 DEBUG Processing 300/686 atomic regions from SNP 89870 to 90470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:29,154 DEBUG Processing 441/826 atomic regions from SNP 132220 to 132820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,188 DEBUG Processing 348/708 atomic regions from SNP 104233 to 104833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,204 DEBUG Processing 381/724 atomic regions from SNP 114109 to 114709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,382 DEBUG Processing 301/686 atomic regions from SNP 90170 to 90770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:29,413 DEBUG Processing 442/826 atomic regions from SNP 132520 to 133120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,418 DEBUG Processing 349/708 atomic regions from SNP 104533 to 105133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,438 DEBUG Processing 382/724 atomic regions from SNP 114409 to 115009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,616 DEBUG Processing 302/686 atomic regions from SNP 90470 to 91070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:29,644 DEBUG Processing 350/708 atomic regions from SNP 104833 to 105433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,667 DEBUG Processing 383/724 atomic regions from SNP 114709 to 115309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,675 DEBUG Processing 443/826 atomic regions from SNP 132820 to 133420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,856 DEBUG Processing 303/686 atomic regions from SNP 90770 to 91370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:29,873 DEBUG Processing 351/708 atomic regions from SNP 105133 to 105733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,898 DEBUG Processing 384/724 atomic regions from SNP 115009 to 115609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,956 DEBUG Processing 444/826 atomic regions from SNP 133120 to 133720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,105 DEBUG Processing 352/708 atomic regions from SNP 105433 to 106033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,116 DEBUG Processing 304/686 atomic regions from SNP 91070 to 91670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:30,129 DEBUG Processing 385/724 atomic regions from SNP 115309 to 115909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,235 DEBUG Processing 445/826 atomic regions from SNP 133420 to 134020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,341 DEBUG Processing 353/708 atomic regions from SNP 105733 to 106333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,365 DEBUG Processing 386/724 atomic regions from SNP 115609 to 116209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,405 DEBUG Processing 305/686 atomic regions from SNP 91370 to 91970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:30,513 DEBUG Processing 446/826 atomic regions from SNP 133720 to 134320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,573 DEBUG Processing 354/708 atomic regions from SNP 106033 to 106633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,601 DEBUG Processing 387/724 atomic regions from SNP 115909 to 116509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,667 DEBUG Processing 306/686 atomic regions from SNP 91670 to 92270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:30,788 DEBUG Processing 447/826 atomic regions from SNP 134020 to 134620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,795 DEBUG Processing 355/708 atomic regions from SNP 106333 to 106933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,824 DEBUG Processing 388/724 atomic regions from SNP 116209 to 116809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,902 DEBUG Processing 307/686 atomic regions from SNP 91970 to 92570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,022 DEBUG Processing 356/708 atomic regions from SNP 106633 to 107233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,046 DEBUG Processing 448/826 atomic regions from SNP 134320 to 134920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,054 DEBUG Processing 389/724 atomic regions from SNP 116509 to 117109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,129 DEBUG Processing 308/686 atomic regions from SNP 92270 to 92870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,255 DEBUG Processing 357/708 atomic regions from SNP 106933 to 107533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,285 DEBUG Processing 390/724 atomic regions from SNP 116809 to 117409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,315 DEBUG Processing 449/826 atomic regions from SNP 134620 to 135220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,362 DEBUG Processing 309/686 atomic regions from SNP 92570 to 93170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,482 DEBUG Processing 358/708 atomic regions from SNP 107233 to 107833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,517 DEBUG Processing 391/724 atomic regions from SNP 117109 to 117709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,570 DEBUG Processing 450/826 atomic regions from SNP 134920 to 135520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,608 DEBUG Processing 310/686 atomic regions from SNP 92870 to 93470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,708 DEBUG Processing 359/708 atomic regions from SNP 107533 to 108133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,746 DEBUG Processing 392/724 atomic regions from SNP 117409 to 118009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,831 DEBUG Processing 451/826 atomic regions from SNP 135220 to 135820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,848 DEBUG Processing 311/686 atomic regions from SNP 93170 to 93770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,953 DEBUG Processing 360/708 atomic regions from SNP 107833 to 108433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,971 DEBUG Processing 393/724 atomic regions from SNP 117709 to 118309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,087 DEBUG Processing 312/686 atomic regions from SNP 93470 to 94070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:32,094 DEBUG Processing 452/826 atomic regions from SNP 135520 to 136120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,194 DEBUG Processing 394/724 atomic regions from SNP 118009 to 118609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,195 DEBUG Processing 361/708 atomic regions from SNP 108133 to 108733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,315 DEBUG Processing 313/686 atomic regions from SNP 93770 to 94370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:32,348 DEBUG Processing 453/826 atomic regions from SNP 135820 to 136420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,422 DEBUG Processing 395/724 atomic regions from SNP 118309 to 118909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,446 DEBUG Processing 362/708 atomic regions from SNP 108433 to 109033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,542 DEBUG Processing 314/686 atomic regions from SNP 94070 to 94670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:32,604 DEBUG Processing 454/826 atomic regions from SNP 136120 to 136720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,645 DEBUG Processing 396/724 atomic regions from SNP 118609 to 119209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,693 DEBUG Processing 363/708 atomic regions from SNP 108733 to 109333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,775 DEBUG Processing 315/686 atomic regions from SNP 94370 to 94970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:32,858 DEBUG Processing 455/826 atomic regions from SNP 136420 to 137020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,868 DEBUG Processing 397/724 atomic regions from SNP 118909 to 119509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,950 DEBUG Processing 364/708 atomic regions from SNP 109033 to 109633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,005 DEBUG Processing 316/686 atomic regions from SNP 94670 to 95270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,089 DEBUG Processing 398/724 atomic regions from SNP 119209 to 119809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,111 DEBUG Processing 456/826 atomic regions from SNP 136720 to 137320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,225 DEBUG Processing 365/708 atomic regions from SNP 109333 to 109933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,242 DEBUG Processing 317/686 atomic regions from SNP 94970 to 95570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,314 DEBUG Processing 399/724 atomic regions from SNP 119509 to 120109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,357 DEBUG Processing 457/826 atomic regions from SNP 137020 to 137620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,481 DEBUG Processing 318/686 atomic regions from SNP 95270 to 95870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,495 DEBUG Processing 366/708 atomic regions from SNP 109633 to 110233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,544 DEBUG Processing 400/724 atomic regions from SNP 119809 to 120409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,616 DEBUG Processing 458/826 atomic regions from SNP 137320 to 137920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,720 DEBUG Processing 319/686 atomic regions from SNP 95570 to 96170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,743 DEBUG Processing 367/708 atomic regions from SNP 109933 to 110533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,781 DEBUG Processing 401/724 atomic regions from SNP 120109 to 120709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,883 DEBUG Processing 459/826 atomic regions from SNP 137620 to 138220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,949 DEBUG Processing 320/686 atomic regions from SNP 95870 to 96470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,975 DEBUG Processing 368/708 atomic regions from SNP 110233 to 110833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,003 DEBUG Processing 402/724 atomic regions from SNP 120409 to 121009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,141 DEBUG Processing 460/826 atomic regions from SNP 137920 to 138520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,187 DEBUG Processing 321/686 atomic regions from SNP 96170 to 96770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,232 DEBUG Processing 403/724 atomic regions from SNP 120709 to 121309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,234 DEBUG Processing 369/708 atomic regions from SNP 110533 to 111133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,399 DEBUG Processing 461/826 atomic regions from SNP 138220 to 138820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,429 DEBUG Processing 322/686 atomic regions from SNP 96470 to 97070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,470 DEBUG Processing 404/724 atomic regions from SNP 121009 to 121609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,498 DEBUG Processing 370/708 atomic regions from SNP 110833 to 111433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,668 DEBUG Processing 323/686 atomic regions from SNP 96770 to 97370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,671 DEBUG Processing 462/826 atomic regions from SNP 138520 to 139120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,706 DEBUG Processing 405/724 atomic regions from SNP 121309 to 121909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,742 DEBUG Processing 371/708 atomic regions from SNP 111133 to 111733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,908 DEBUG Processing 324/686 atomic regions from SNP 97070 to 97670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,920 DEBUG Processing 463/826 atomic regions from SNP 138820 to 139420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,942 DEBUG Processing 406/724 atomic regions from SNP 121609 to 122209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,979 DEBUG Processing 372/708 atomic regions from SNP 111433 to 112033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,153 DEBUG Processing 325/686 atomic regions from SNP 97370 to 97970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,177 DEBUG Processing 407/724 atomic regions from SNP 121909 to 122509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,180 DEBUG Processing 464/826 atomic regions from SNP 139120 to 139720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,206 DEBUG Processing 373/708 atomic regions from SNP 111733 to 112333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,407 DEBUG Processing 326/686 atomic regions from SNP 97670 to 98270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,421 DEBUG Processing 408/724 atomic regions from SNP 122209 to 122809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,444 DEBUG Processing 374/708 atomic regions from SNP 112033 to 112633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,466 DEBUG Processing 465/826 atomic regions from SNP 139420 to 140020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,658 DEBUG Processing 327/686 atomic regions from SNP 97970 to 98570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,670 DEBUG Processing 409/724 atomic regions from SNP 122509 to 123109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,710 DEBUG Processing 375/708 atomic regions from SNP 112333 to 112933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,746 DEBUG Processing 466/826 atomic regions from SNP 139720 to 140320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,904 DEBUG Processing 328/686 atomic regions from SNP 98270 to 98870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,926 DEBUG Processing 410/724 atomic regions from SNP 122809 to 123409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,971 DEBUG Processing 376/708 atomic regions from SNP 112633 to 113233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,015 DEBUG Processing 467/826 atomic regions from SNP 140020 to 140620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,149 DEBUG Processing 329/686 atomic regions from SNP 98570 to 99170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,180 DEBUG Processing 411/724 atomic regions from SNP 123109 to 123709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,205 DEBUG Processing 377/708 atomic regions from SNP 112933 to 113533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,277 DEBUG Processing 468/826 atomic regions from SNP 140320 to 140920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,398 DEBUG Processing 330/686 atomic regions from SNP 98870 to 99470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,420 DEBUG Processing 412/724 atomic regions from SNP 123409 to 124009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,441 DEBUG Processing 378/708 atomic regions from SNP 113233 to 113833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,531 DEBUG Processing 469/826 atomic regions from SNP 140620 to 141220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,650 DEBUG Processing 331/686 atomic regions from SNP 99170 to 99770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,668 DEBUG Processing 413/724 atomic regions from SNP 123709 to 124309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,687 DEBUG Processing 379/708 atomic regions from SNP 113533 to 114133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,783 DEBUG Processing 470/826 atomic regions from SNP 140920 to 141520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,895 DEBUG Processing 332/686 atomic regions from SNP 99470 to 100070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,920 DEBUG Processing 414/724 atomic regions from SNP 124009 to 124609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,932 DEBUG Processing 380/708 atomic regions from SNP 113833 to 114433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,046 DEBUG Processing 471/826 atomic regions from SNP 141220 to 141820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,140 DEBUG Processing 333/686 atomic regions from SNP 99770 to 100370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,170 DEBUG Processing 381/708 atomic regions from SNP 114133 to 114733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,172 DEBUG Processing 415/724 atomic regions from SNP 124309 to 124909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,321 DEBUG Processing 472/826 atomic regions from SNP 141520 to 142120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,386 DEBUG Processing 334/686 atomic regions from SNP 100070 to 100670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,406 DEBUG Processing 382/708 atomic regions from SNP 114433 to 115033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,409 DEBUG Processing 416/724 atomic regions from SNP 124609 to 125209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,613 DEBUG Processing 473/826 atomic regions from SNP 141820 to 142420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,634 DEBUG Processing 335/686 atomic regions from SNP 100370 to 100970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,650 DEBUG Processing 383/708 atomic regions from SNP 114733 to 115333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,657 DEBUG Processing 417/724 atomic regions from SNP 124909 to 125509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,884 DEBUG Processing 336/686 atomic regions from SNP 100670 to 101270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,896 DEBUG Processing 384/708 atomic regions from SNP 115033 to 115633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,902 DEBUG Processing 474/826 atomic regions from SNP 142120 to 142720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,904 DEBUG Processing 418/724 atomic regions from SNP 125209 to 125809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,127 DEBUG Processing 337/686 atomic regions from SNP 100970 to 101570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,130 DEBUG Processing 385/708 atomic regions from SNP 115333 to 115933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,147 DEBUG Processing 419/724 atomic regions from SNP 125509 to 126109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,183 DEBUG Processing 475/826 atomic regions from SNP 142420 to 143020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,370 DEBUG Processing 386/708 atomic regions from SNP 115633 to 116233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,372 DEBUG Processing 338/686 atomic regions from SNP 101270 to 101870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,389 DEBUG Processing 420/724 atomic regions from SNP 125809 to 126409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,464 DEBUG Processing 476/826 atomic regions from SNP 142720 to 143320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,609 DEBUG Processing 387/708 atomic regions from SNP 115933 to 116533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,621 DEBUG Processing 339/686 atomic regions from SNP 101570 to 102170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,652 DEBUG Processing 421/724 atomic regions from SNP 126109 to 126709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,748 DEBUG Processing 477/826 atomic regions from SNP 143020 to 143620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,859 DEBUG Processing 388/708 atomic regions from SNP 116233 to 116833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,869 DEBUG Processing 340/686 atomic regions from SNP 101870 to 102470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,910 DEBUG Processing 422/724 atomic regions from SNP 126409 to 127009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,037 DEBUG Processing 478/826 atomic regions from SNP 143320 to 143920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,110 DEBUG Processing 341/686 atomic regions from SNP 102170 to 102770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,116 DEBUG Processing 389/708 atomic regions from SNP 116533 to 117133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,153 DEBUG Processing 423/724 atomic regions from SNP 126709 to 127309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,325 DEBUG Processing 479/826 atomic regions from SNP 143620 to 144220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,351 DEBUG Processing 342/686 atomic regions from SNP 102470 to 103070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,351 DEBUG Processing 390/708 atomic regions from SNP 116833 to 117433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,411 DEBUG Processing 424/724 atomic regions from SNP 127009 to 127609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,585 DEBUG Processing 391/708 atomic regions from SNP 117133 to 117733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,594 DEBUG Processing 343/686 atomic regions from SNP 102770 to 103370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,619 DEBUG Processing 480/826 atomic regions from SNP 143920 to 144520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,650 DEBUG Processing 425/724 atomic regions from SNP 127309 to 127909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,825 DEBUG Processing 392/708 atomic regions from SNP 117433 to 118033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,845 DEBUG Processing 344/686 atomic regions from SNP 103070 to 103670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,887 DEBUG Processing 481/826 atomic regions from SNP 144220 to 144820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,898 DEBUG Processing 426/724 atomic regions from SNP 127609 to 128209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,072 DEBUG Processing 393/708 atomic regions from SNP 117733 to 118333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,093 DEBUG Processing 345/686 atomic regions from SNP 103370 to 103970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,141 DEBUG Processing 427/724 atomic regions from SNP 127909 to 128509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,153 DEBUG Processing 482/826 atomic regions from SNP 144520 to 145120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,301 DEBUG Processing 394/708 atomic regions from SNP 118033 to 118633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,336 DEBUG Processing 346/686 atomic regions from SNP 103670 to 104270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,349 DEBUG Segmenting atomic regions: 2025-01-31 09:47:40,381 DEBUG Processing 428/724 atomic regions from SNP 128209 to 128809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,419 DEBUG Processing 483/826 atomic regions from SNP 144820 to 145420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,437 DEBUG Processing 1/638 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:40,523 DEBUG Processing 395/708 atomic regions from SNP 118333 to 118933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,573 DEBUG Processing 347/686 atomic regions from SNP 103970 to 104570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,620 DEBUG Processing 429/724 atomic regions from SNP 128509 to 129109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,677 DEBUG Processing 2/638 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:40,704 DEBUG Processing 484/826 atomic regions from SNP 145120 to 145720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,756 DEBUG Processing 396/708 atomic regions from SNP 118633 to 119233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,812 DEBUG Processing 348/686 atomic regions from SNP 104270 to 104870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,856 DEBUG Processing 430/724 atomic regions from SNP 128809 to 129409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,919 DEBUG Processing 3/638 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:40,988 DEBUG Processing 397/708 atomic regions from SNP 118933 to 119533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,999 DEBUG Processing 485/826 atomic regions from SNP 145420 to 146020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,058 DEBUG Processing 349/686 atomic regions from SNP 104570 to 105170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,096 DEBUG Processing 431/724 atomic regions from SNP 129109 to 129709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,156 DEBUG Processing 4/638 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:41,214 DEBUG Processing 398/708 atomic regions from SNP 119233 to 119833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,260 DEBUG Processing 486/826 atomic regions from SNP 145720 to 146320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,298 DEBUG Processing 350/686 atomic regions from SNP 104870 to 105470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,335 DEBUG Processing 432/724 atomic regions from SNP 129409 to 130009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,422 DEBUG Processing 5/638 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:41,447 DEBUG Processing 399/708 atomic regions from SNP 119533 to 120133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,515 DEBUG Processing 487/826 atomic regions from SNP 146020 to 146620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,527 DEBUG Processing 351/686 atomic regions from SNP 105170 to 105770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,596 DEBUG Processing 433/724 atomic regions from SNP 129709 to 130309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,667 DEBUG Processing 6/638 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:41,688 DEBUG Processing 400/708 atomic regions from SNP 119833 to 120433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,766 DEBUG Processing 352/686 atomic regions from SNP 105470 to 106070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,772 DEBUG Processing 488/826 atomic regions from SNP 146320 to 146920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,858 DEBUG Processing 434/724 atomic regions from SNP 130009 to 130609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,899 DEBUG Processing 7/638 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:41,927 DEBUG Processing 401/708 atomic regions from SNP 120133 to 120733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,012 DEBUG Processing 353/686 atomic regions from SNP 105770 to 106370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,035 DEBUG Processing 489/826 atomic regions from SNP 146620 to 147220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,122 DEBUG Processing 435/724 atomic regions from SNP 130309 to 130909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,124 DEBUG Processing 8/638 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:42,155 DEBUG Processing 402/708 atomic regions from SNP 120433 to 121033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,260 DEBUG Processing 354/686 atomic regions from SNP 106070 to 106670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,320 DEBUG Processing 490/826 atomic regions from SNP 146920 to 147520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,357 DEBUG Processing 9/638 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:42,383 DEBUG Processing 403/708 atomic regions from SNP 120733 to 121333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,394 DEBUG Processing 436/724 atomic regions from SNP 130609 to 131209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,499 DEBUG Processing 355/686 atomic regions from SNP 106370 to 106970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,604 DEBUG Processing 10/638 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:42,614 DEBUG Processing 491/826 atomic regions from SNP 147220 to 147820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,625 DEBUG Processing 404/708 atomic regions from SNP 121033 to 121633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,672 DEBUG Processing 437/724 atomic regions from SNP 130909 to 131509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,733 DEBUG Processing 356/686 atomic regions from SNP 106670 to 107270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,851 DEBUG Processing 11/638 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:42,860 DEBUG Processing 405/708 atomic regions from SNP 121333 to 121933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,895 DEBUG Processing 492/826 atomic regions from SNP 147520 to 148120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,962 DEBUG Processing 438/724 atomic regions from SNP 131209 to 131809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,980 DEBUG Processing 357/686 atomic regions from SNP 106970 to 107570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,078 DEBUG Processing 406/708 atomic regions from SNP 121633 to 122233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,084 DEBUG Processing 12/638 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:43,184 DEBUG Processing 493/826 atomic regions from SNP 147820 to 148420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,229 DEBUG Processing 358/686 atomic regions from SNP 107270 to 107870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,239 DEBUG Processing 439/724 atomic regions from SNP 131509 to 132109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,312 DEBUG Processing 407/708 atomic regions from SNP 121933 to 122533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,322 DEBUG Processing 13/638 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:43,464 DEBUG Processing 494/826 atomic regions from SNP 148120 to 148720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,470 DEBUG Processing 359/686 atomic regions from SNP 107570 to 108170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,515 DEBUG Processing 440/724 atomic regions from SNP 131809 to 132409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,547 DEBUG Processing 408/708 atomic regions from SNP 122233 to 122833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,556 DEBUG Processing 14/638 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:43,706 DEBUG Processing 360/686 atomic regions from SNP 107870 to 108470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,733 DEBUG Processing 495/826 atomic regions from SNP 148420 to 149020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,781 DEBUG Processing 409/708 atomic regions from SNP 122533 to 123133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,789 DEBUG Processing 15/638 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:43,792 DEBUG Processing 441/724 atomic regions from SNP 132109 to 132709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,945 DEBUG Processing 361/686 atomic regions from SNP 108170 to 108770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,005 DEBUG Processing 496/826 atomic regions from SNP 148720 to 149320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,024 DEBUG Processing 410/708 atomic regions from SNP 122833 to 123433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,032 DEBUG Processing 16/638 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:44,075 DEBUG Processing 442/724 atomic regions from SNP 132409 to 133009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,199 DEBUG Processing 362/686 atomic regions from SNP 108470 to 109070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,271 DEBUG Processing 411/708 atomic regions from SNP 123133 to 123733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,280 DEBUG Processing 17/638 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:44,281 DEBUG Processing 497/826 atomic regions from SNP 149020 to 149620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,355 DEBUG Processing 443/724 atomic regions from SNP 132709 to 133309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,442 DEBUG Processing 363/686 atomic regions from SNP 108770 to 109370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,515 DEBUG Processing 412/708 atomic regions from SNP 123433 to 124033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,530 DEBUG Processing 18/638 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:44,561 DEBUG Processing 498/826 atomic regions from SNP 149320 to 149920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,637 DEBUG Processing 444/724 atomic regions from SNP 133009 to 133609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,686 DEBUG Processing 364/686 atomic regions from SNP 109070 to 109670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,755 DEBUG Processing 413/708 atomic regions from SNP 123733 to 124333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,772 DEBUG Processing 19/638 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:44,836 DEBUG Processing 499/826 atomic regions from SNP 149620 to 150220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,919 DEBUG Processing 445/724 atomic regions from SNP 133309 to 133909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,933 DEBUG Processing 365/686 atomic regions from SNP 109370 to 109970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,993 DEBUG Processing 414/708 atomic regions from SNP 124033 to 124633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,009 DEBUG Processing 20/638 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:45,100 DEBUG Processing 500/826 atomic regions from SNP 149920 to 150520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,171 DEBUG Processing 446/724 atomic regions from SNP 133609 to 134209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,173 DEBUG Processing 366/686 atomic regions from SNP 109670 to 110270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,230 DEBUG Processing 415/708 atomic regions from SNP 124333 to 124933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,249 DEBUG Processing 21/638 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:45,363 DEBUG Processing 501/826 atomic regions from SNP 150220 to 150820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,409 DEBUG Processing 447/724 atomic regions from SNP 133909 to 134509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,416 DEBUG Processing 367/686 atomic regions from SNP 109970 to 110570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,463 DEBUG Processing 416/708 atomic regions from SNP 124633 to 125233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,494 DEBUG Processing 22/638 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:45,635 DEBUG Processing 502/826 atomic regions from SNP 150520 to 151120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,653 DEBUG Processing 448/724 atomic regions from SNP 134209 to 134809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,663 DEBUG Processing 368/686 atomic regions from SNP 110270 to 110870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,702 DEBUG Processing 417/708 atomic regions from SNP 124933 to 125533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,731 DEBUG Processing 23/638 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:45,897 DEBUG Processing 449/724 atomic regions from SNP 134509 to 135109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,905 DEBUG Processing 503/826 atomic regions from SNP 150820 to 151420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,918 DEBUG Processing 369/686 atomic regions from SNP 110570 to 111170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,949 DEBUG Processing 418/708 atomic regions from SNP 125233 to 125833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,970 DEBUG Processing 24/638 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:46,141 DEBUG Processing 450/724 atomic regions from SNP 134809 to 135409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,168 DEBUG Processing 370/686 atomic regions from SNP 110870 to 111470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,180 DEBUG Processing 504/826 atomic regions from SNP 151120 to 151720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,200 DEBUG Processing 419/708 atomic regions from SNP 125533 to 126133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,213 DEBUG Processing 25/638 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:46,375 DEBUG Processing 451/724 atomic regions from SNP 135109 to 135709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,411 DEBUG Processing 371/686 atomic regions from SNP 111170 to 111770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,442 DEBUG Processing 420/708 atomic regions from SNP 125833 to 126433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,448 DEBUG Processing 505/826 atomic regions from SNP 151420 to 152020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,451 DEBUG Processing 26/638 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:46,611 DEBUG Processing 452/724 atomic regions from SNP 135409 to 136009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,652 DEBUG Processing 372/686 atomic regions from SNP 111470 to 112070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,679 DEBUG Processing 421/708 atomic regions from SNP 126133 to 126733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,690 DEBUG Processing 27/638 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:46,715 DEBUG Processing 506/826 atomic regions from SNP 151720 to 152320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,729 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:47:46,847 DEBUG Processing 453/724 atomic regions from SNP 135709 to 136309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,901 DEBUG Processing 373/686 atomic regions from SNP 111770 to 112370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,918 DEBUG Processing 422/708 atomic regions from SNP 126433 to 127033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,935 DEBUG Processing 28/638 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:46,986 DEBUG Processing 507/826 atomic regions from SNP 152020 to 152620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,083 DEBUG Processing 454/724 atomic regions from SNP 136009 to 136609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,148 DEBUG Processing 374/686 atomic regions from SNP 112070 to 112670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,160 DEBUG Processing 423/708 atomic regions from SNP 126733 to 127333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,178 DEBUG Processing 29/638 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:47,253 DEBUG Processing 508/826 atomic regions from SNP 152320 to 152920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,321 DEBUG Processing 455/724 atomic regions from SNP 136309 to 136909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,393 DEBUG Processing 375/686 atomic regions from SNP 112370 to 112970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,398 DEBUG Processing 424/708 atomic regions from SNP 127033 to 127633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,409 DEBUG Processing 30/638 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:47,509 DEBUG Processing 509/826 atomic regions from SNP 152620 to 153220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,559 DEBUG Processing 456/724 atomic regions from SNP 136609 to 137209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,641 DEBUG Processing 425/708 atomic regions from SNP 127333 to 127933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,643 DEBUG Processing 376/686 atomic regions from SNP 112670 to 113270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,652 DEBUG Processing 31/638 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:47,765 DEBUG Processing 510/826 atomic regions from SNP 152920 to 153520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,792 DEBUG Processing 457/724 atomic regions from SNP 136909 to 137509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,878 DEBUG Processing 426/708 atomic regions from SNP 127633 to 128233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,891 DEBUG Processing 32/638 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:47,894 DEBUG Processing 377/686 atomic regions from SNP 112970 to 113570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,034 DEBUG Processing 511/826 atomic regions from SNP 153220 to 153820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,037 DEBUG Processing 458/724 atomic regions from SNP 137209 to 137809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,130 DEBUG Processing 33/638 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:48,133 DEBUG Processing 427/708 atomic regions from SNP 127933 to 128533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,149 DEBUG Processing 378/686 atomic regions from SNP 113270 to 113870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,281 DEBUG Processing 459/724 atomic regions from SNP 137509 to 138109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,306 DEBUG Processing 512/826 atomic regions from SNP 153520 to 154120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,358 DEBUG Processing 428/708 atomic regions from SNP 128233 to 128833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,361 DEBUG Processing 34/638 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:48,379 DEBUG Processing 379/686 atomic regions from SNP 113570 to 114170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,515 DEBUG Processing 460/724 atomic regions from SNP 137809 to 138409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,569 DEBUG Processing 513/826 atomic regions from SNP 153820 to 154420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,593 DEBUG Processing 429/708 atomic regions from SNP 128533 to 129133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,594 DEBUG Processing 35/638 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:48,618 DEBUG Processing 380/686 atomic regions from SNP 113870 to 114470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,744 DEBUG Processing 461/724 atomic regions from SNP 138109 to 138709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,830 DEBUG Processing 430/708 atomic regions from SNP 128833 to 129433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,831 DEBUG Processing 36/638 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:48,837 DEBUG Processing 514/826 atomic regions from SNP 154120 to 154720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,862 DEBUG Processing 381/686 atomic regions from SNP 114170 to 114770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,963 DEBUG Processing 462/724 atomic regions from SNP 138409 to 139009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,062 DEBUG Processing 431/708 atomic regions from SNP 129133 to 129733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,068 DEBUG Processing 37/638 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:49,101 DEBUG Processing 382/686 atomic regions from SNP 114470 to 115070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,102 DEBUG Processing 515/826 atomic regions from SNP 154420 to 155020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,191 DEBUG Processing 463/724 atomic regions from SNP 138709 to 139309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,290 DEBUG Processing 432/708 atomic regions from SNP 129433 to 130033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,309 DEBUG Processing 38/638 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:49,338 DEBUG Processing 383/686 atomic regions from SNP 114770 to 115370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,370 DEBUG Processing 516/826 atomic regions from SNP 154720 to 155320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,420 DEBUG Processing 464/724 atomic regions from SNP 139009 to 139609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,519 DEBUG Processing 433/708 atomic regions from SNP 129733 to 130333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,540 DEBUG Processing 39/638 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:49,576 DEBUG Processing 384/686 atomic regions from SNP 115070 to 115670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,629 DEBUG Processing 517/826 atomic regions from SNP 155020 to 155620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,649 DEBUG Processing 465/724 atomic regions from SNP 139309 to 139909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,752 DEBUG Processing 434/708 atomic regions from SNP 130033 to 130633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,767 DEBUG Processing 40/638 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:49,821 DEBUG Processing 385/686 atomic regions from SNP 115370 to 115970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,884 DEBUG Processing 466/724 atomic regions from SNP 139609 to 140209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,889 DEBUG Processing 518/826 atomic regions from SNP 155320 to 155920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,977 DEBUG Processing 435/708 atomic regions from SNP 130333 to 130933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,993 DEBUG Processing 41/638 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:50,056 DEBUG Processing 386/686 atomic regions from SNP 115670 to 116270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,117 DEBUG Processing 467/724 atomic regions from SNP 139909 to 140509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,144 DEBUG Processing 519/826 atomic regions from SNP 155620 to 156220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,206 DEBUG Processing 436/708 atomic regions from SNP 130633 to 131233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,228 DEBUG Processing 42/638 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:50,303 DEBUG Processing 387/686 atomic regions from SNP 115970 to 116570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,349 DEBUG Processing 468/724 atomic regions from SNP 140209 to 140809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,393 DEBUG Processing 520/826 atomic regions from SNP 155920 to 156520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,437 DEBUG Processing 437/708 atomic regions from SNP 130933 to 131533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,460 DEBUG Processing 43/638 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:50,542 DEBUG Processing 388/686 atomic regions from SNP 116270 to 116870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,584 DEBUG Processing 469/724 atomic regions from SNP 140509 to 141109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,650 DEBUG Processing 521/826 atomic regions from SNP 156220 to 156820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,694 DEBUG Processing 44/638 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:50,695 DEBUG Processing 438/708 atomic regions from SNP 131233 to 131833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,785 DEBUG Processing 389/686 atomic regions from SNP 116570 to 117170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,820 DEBUG Processing 470/724 atomic regions from SNP 140809 to 141409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,908 DEBUG Processing 522/826 atomic regions from SNP 156520 to 157120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,923 DEBUG Processing 45/638 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:50,939 DEBUG Processing 439/708 atomic regions from SNP 131533 to 132133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,026 DEBUG Processing 390/686 atomic regions from SNP 116870 to 117470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,057 DEBUG Processing 471/724 atomic regions from SNP 141109 to 141709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,160 DEBUG Processing 46/638 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:51,173 DEBUG Processing 523/826 atomic regions from SNP 156820 to 157420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,189 DEBUG Processing 440/708 atomic regions from SNP 131833 to 132433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,266 DEBUG Processing 391/686 atomic regions from SNP 117170 to 117770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,294 DEBUG Processing 472/724 atomic regions from SNP 141409 to 142009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,393 DEBUG Processing 47/638 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:51,435 DEBUG Processing 524/826 atomic regions from SNP 157120 to 157720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,453 DEBUG Processing 441/708 atomic regions from SNP 132133 to 132733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,507 DEBUG Processing 392/686 atomic regions from SNP 117470 to 118070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,530 DEBUG Processing 473/724 atomic regions from SNP 141709 to 142309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,621 DEBUG Processing 48/638 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:51,696 DEBUG Processing 525/826 atomic regions from SNP 157420 to 158020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,705 DEBUG Processing 442/708 atomic regions from SNP 132433 to 133033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,754 DEBUG Processing 393/686 atomic regions from SNP 117770 to 118370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,768 DEBUG Processing 474/724 atomic regions from SNP 142009 to 142609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,849 DEBUG Processing 49/638 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:51,952 DEBUG Processing 443/708 atomic regions from SNP 132733 to 133333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,960 DEBUG Processing 526/826 atomic regions from SNP 157720 to 158320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,008 DEBUG Processing 394/686 atomic regions from SNP 118070 to 118670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,016 DEBUG Processing 475/724 atomic regions from SNP 142309 to 142909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,088 DEBUG Processing 50/638 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:52,217 DEBUG Processing 444/708 atomic regions from SNP 133033 to 133633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,246 DEBUG Processing 527/826 atomic regions from SNP 158020 to 158620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,265 DEBUG Processing 395/686 atomic regions from SNP 118370 to 118970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,276 DEBUG Processing 476/724 atomic regions from SNP 142609 to 143209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,323 DEBUG Processing 51/638 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:52,497 DEBUG Processing 445/708 atomic regions from SNP 133333 to 133933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,517 DEBUG Processing 528/826 atomic regions from SNP 158320 to 158920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,529 DEBUG Processing 396/686 atomic regions from SNP 118670 to 119270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,544 DEBUG Processing 477/724 atomic regions from SNP 142909 to 143509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,576 DEBUG Processing 52/638 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:52,763 DEBUG Processing 446/708 atomic regions from SNP 133633 to 134233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,771 DEBUG Processing 529/826 atomic regions from SNP 158620 to 159220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,777 DEBUG Processing 397/686 atomic regions from SNP 118970 to 119570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,790 DEBUG Processing 478/724 atomic regions from SNP 143209 to 143809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,811 DEBUG Processing 53/638 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:53,021 DEBUG Processing 398/686 atomic regions from SNP 119270 to 119870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,027 DEBUG Processing 530/826 atomic regions from SNP 158920 to 159520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,030 DEBUG Processing 479/724 atomic regions from SNP 143509 to 144109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,030 DEBUG Processing 447/708 atomic regions from SNP 133933 to 134533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,044 DEBUG Processing 54/638 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:53,269 DEBUG Processing 399/686 atomic regions from SNP 119570 to 120170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,273 DEBUG Processing 480/724 atomic regions from SNP 143809 to 144409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,275 DEBUG Processing 55/638 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:53,279 DEBUG Processing 448/708 atomic regions from SNP 134233 to 134833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,283 DEBUG Processing 531/826 atomic regions from SNP 159220 to 159820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,507 DEBUG Processing 56/638 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:53,520 DEBUG Processing 400/686 atomic regions from SNP 119870 to 120470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,521 DEBUG Processing 481/724 atomic regions from SNP 144109 to 144709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,525 DEBUG Processing 449/708 atomic regions from SNP 134533 to 135133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,549 DEBUG Processing 532/826 atomic regions from SNP 159520 to 160120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,744 DEBUG Processing 57/638 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:53,772 DEBUG Processing 482/724 atomic regions from SNP 144409 to 145009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,774 DEBUG Processing 450/708 atomic regions from SNP 134833 to 135433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,777 DEBUG Processing 401/686 atomic regions from SNP 120170 to 120770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,814 DEBUG Processing 533/826 atomic regions from SNP 159820 to 160420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,981 DEBUG Processing 58/638 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:54,019 DEBUG Processing 451/708 atomic regions from SNP 135133 to 135733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,020 DEBUG Processing 483/724 atomic regions from SNP 144709 to 145309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,027 DEBUG Processing 402/686 atomic regions from SNP 120470 to 121070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,073 DEBUG Processing 534/826 atomic regions from SNP 160120 to 160720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,217 DEBUG Processing 59/638 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:54,260 DEBUG Processing 452/708 atomic regions from SNP 135433 to 136033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,264 DEBUG Processing 484/724 atomic regions from SNP 145009 to 145609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,274 DEBUG Processing 403/686 atomic regions from SNP 120770 to 121370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,334 DEBUG Processing 535/826 atomic regions from SNP 160420 to 161020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,454 DEBUG Processing 60/638 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:54,500 DEBUG Processing 453/708 atomic regions from SNP 135733 to 136333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,504 DEBUG Processing 485/724 atomic regions from SNP 145309 to 145909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,520 DEBUG Processing 404/686 atomic regions from SNP 121070 to 121670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,595 DEBUG Processing 536/826 atomic regions from SNP 160720 to 161320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,686 DEBUG Processing 61/638 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:54,744 DEBUG Processing 454/708 atomic regions from SNP 136033 to 136633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,749 DEBUG Processing 486/724 atomic regions from SNP 145609 to 146209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,767 DEBUG Processing 405/686 atomic regions from SNP 121370 to 121970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,846 DEBUG Processing 537/826 atomic regions from SNP 161020 to 161620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,917 DEBUG Processing 62/638 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:54,987 DEBUG Processing 455/708 atomic regions from SNP 136333 to 136933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,992 DEBUG Processing 487/724 atomic regions from SNP 145909 to 146509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,018 DEBUG Processing 406/686 atomic regions from SNP 121670 to 122270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,098 DEBUG Processing 538/826 atomic regions from SNP 161320 to 161920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,143 DEBUG Processing 63/638 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:55,226 DEBUG Processing 456/708 atomic regions from SNP 136633 to 137233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,233 DEBUG Processing 488/724 atomic regions from SNP 146209 to 146809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,263 DEBUG Processing 407/686 atomic regions from SNP 121970 to 122570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,347 DEBUG Processing 539/826 atomic regions from SNP 161620 to 162220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,371 DEBUG Processing 64/638 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:55,460 DEBUG Processing 457/708 atomic regions from SNP 136933 to 137533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,471 DEBUG Processing 489/724 atomic regions from SNP 146509 to 147109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,509 DEBUG Processing 408/686 atomic regions from SNP 122270 to 122870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,606 DEBUG Processing 65/638 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:55,609 DEBUG Processing 540/826 atomic regions from SNP 161920 to 162520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,697 DEBUG Processing 458/708 atomic regions from SNP 137233 to 137833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,710 DEBUG Processing 490/724 atomic regions from SNP 146809 to 147409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,759 DEBUG Processing 409/686 atomic regions from SNP 122570 to 123170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,835 DEBUG Processing 66/638 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:55,869 DEBUG Processing 541/826 atomic regions from SNP 162220 to 162820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,931 DEBUG Processing 459/708 atomic regions from SNP 137533 to 138133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,951 DEBUG Processing 491/724 atomic regions from SNP 147109 to 147709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,003 DEBUG Processing 410/686 atomic regions from SNP 122870 to 123470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,067 DEBUG Processing 67/638 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:56,126 DEBUG Processing 542/826 atomic regions from SNP 162520 to 163120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,163 DEBUG Processing 460/708 atomic regions from SNP 137833 to 138433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,194 DEBUG Processing 492/724 atomic regions from SNP 147409 to 148009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,247 DEBUG Processing 411/686 atomic regions from SNP 123170 to 123770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,307 DEBUG Processing 68/638 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:56,382 DEBUG Processing 543/826 atomic regions from SNP 162820 to 163420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,390 DEBUG Processing 461/708 atomic regions from SNP 138133 to 138733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,430 DEBUG Processing 493/724 atomic regions from SNP 147709 to 148309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,485 DEBUG Processing 412/686 atomic regions from SNP 123470 to 124070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,525 DEBUG Processing 69/638 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:56,619 DEBUG Processing 462/708 atomic regions from SNP 138433 to 139033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,647 DEBUG Processing 544/826 atomic regions from SNP 163120 to 163720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,665 DEBUG Processing 494/724 atomic regions from SNP 148009 to 148609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,732 DEBUG Processing 413/686 atomic regions from SNP 123770 to 124370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,758 DEBUG Processing 70/638 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:56,843 DEBUG Processing 463/708 atomic regions from SNP 138733 to 139333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,901 DEBUG Processing 495/724 atomic regions from SNP 148309 to 148909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,907 DEBUG Processing 545/826 atomic regions from SNP 163420 to 164020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,992 DEBUG Processing 414/686 atomic regions from SNP 124070 to 124670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,999 DEBUG Processing 71/638 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:57,065 DEBUG Processing 464/708 atomic regions from SNP 139033 to 139633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,131 DEBUG Processing 496/724 atomic regions from SNP 148609 to 149209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,162 DEBUG Processing 546/826 atomic regions from SNP 163720 to 164320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,267 DEBUG Processing 415/686 atomic regions from SNP 124370 to 124970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,287 DEBUG Processing 72/638 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:57,315 DEBUG Processing 465/708 atomic regions from SNP 139333 to 139933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,390 DEBUG Processing 497/724 atomic regions from SNP 148909 to 149509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,444 DEBUG Processing 547/826 atomic regions from SNP 164020 to 164620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,549 DEBUG Processing 416/686 atomic regions from SNP 124670 to 125270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,609 DEBUG Processing 466/708 atomic regions from SNP 139633 to 140233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,611 DEBUG Processing 73/638 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:57,688 DEBUG Processing 498/724 atomic regions from SNP 149209 to 149809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,766 DEBUG Processing 548/826 atomic regions from SNP 164320 to 164920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,866 DEBUG Processing 417/686 atomic regions from SNP 124970 to 125570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,925 DEBUG Processing 467/708 atomic regions from SNP 139933 to 140533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,951 DEBUG Processing 74/638 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:58,030 DEBUG Processing 499/724 atomic regions from SNP 149509 to 150109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,131 DEBUG Processing 549/826 atomic regions from SNP 164620 to 165220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,231 DEBUG Processing 418/686 atomic regions from SNP 125270 to 125870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,264 DEBUG Processing 468/708 atomic regions from SNP 140233 to 140833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,321 DEBUG Processing 75/638 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:58,413 DEBUG Processing 500/724 atomic regions from SNP 149809 to 150409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,519 DEBUG Processing 550/826 atomic regions from SNP 164920 to 165520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,582 DEBUG Processing 419/686 atomic regions from SNP 125570 to 126170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,595 DEBUG Processing 469/708 atomic regions from SNP 140533 to 141133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,637 DEBUG Processing 76/638 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:58,672 DEBUG Processing 501/724 atomic regions from SNP 150109 to 150709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,778 DEBUG Processing 551/826 atomic regions from SNP 165220 to 165820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,822 DEBUG Processing 420/686 atomic regions from SNP 125870 to 126470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,832 DEBUG Processing 470/708 atomic regions from SNP 140833 to 141433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,899 DEBUG Processing 77/638 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:58,917 DEBUG Processing 502/724 atomic regions from SNP 150409 to 151009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,037 DEBUG Processing 552/826 atomic regions from SNP 165520 to 166120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,064 DEBUG Processing 471/708 atomic regions from SNP 141133 to 141733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,067 DEBUG Processing 421/686 atomic regions from SNP 126170 to 126770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,140 DEBUG Processing 78/638 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:59,154 DEBUG Processing 503/724 atomic regions from SNP 150709 to 151309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,301 DEBUG Processing 553/826 atomic regions from SNP 165820 to 166420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,311 DEBUG Processing 472/708 atomic regions from SNP 141433 to 142033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,326 DEBUG Processing 422/686 atomic regions from SNP 126470 to 127070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,404 DEBUG Processing 79/638 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:59,421 DEBUG Processing 504/724 atomic regions from SNP 151009 to 151609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,589 DEBUG Processing 473/708 atomic regions from SNP 141733 to 142333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,606 DEBUG Processing 554/826 atomic regions from SNP 166120 to 166720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,621 DEBUG Processing 423/686 atomic regions from SNP 126770 to 127370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,670 DEBUG Processing 505/724 atomic regions from SNP 151309 to 151909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,678 DEBUG Processing 80/638 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:59,879 DEBUG Processing 474/708 atomic regions from SNP 142033 to 142633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,934 DEBUG Processing 555/826 atomic regions from SNP 166420 to 167020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,955 DEBUG Processing 424/686 atomic regions from SNP 127070 to 127670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,999 DEBUG Processing 506/724 atomic regions from SNP 151609 to 152209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:00,034 DEBUG Processing 81/638 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:00,176 DEBUG Processing 475/708 atomic regions from SNP 142333 to 142933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,287 DEBUG Processing 556/826 atomic regions from SNP 166720 to 167320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,328 DEBUG Processing 425/686 atomic regions from SNP 127370 to 127970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,351 DEBUG Processing 507/724 atomic regions from SNP 151909 to 152509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:00,404 DEBUG Processing 82/638 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:00,496 DEBUG Processing 476/708 atomic regions from SNP 142633 to 143233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,656 DEBUG Processing 557/826 atomic regions from SNP 167020 to 167620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,698 DEBUG Processing 426/686 atomic regions from SNP 127670 to 128270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,719 DEBUG Processing 508/724 atomic regions from SNP 152209 to 152809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:00,785 DEBUG Processing 83/638 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:00,847 DEBUG Processing 477/708 atomic regions from SNP 142933 to 143533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,050 DEBUG Processing 558/826 atomic regions from SNP 167320 to 167920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,080 DEBUG Processing 427/686 atomic regions from SNP 127970 to 128570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,090 DEBUG Processing 509/724 atomic regions from SNP 152509 to 153109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,159 DEBUG Processing 84/638 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:01,217 DEBUG Processing 478/708 atomic regions from SNP 143233 to 143833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,465 DEBUG Processing 559/826 atomic regions from SNP 167620 to 168220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,469 DEBUG Processing 510/724 atomic regions from SNP 152809 to 153409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,471 DEBUG Processing 428/686 atomic regions from SNP 128270 to 128870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,490 DEBUG Processing 85/638 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:01,508 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:48:01,513 DEBUG Processing 479/708 atomic regions from SNP 143533 to 144133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,543 DEBUG chr9: Signal quantile: 0.993. signal threshold: 10. Best RMSEA: 0.017 2025-01-31 09:48:01,725 DEBUG Processing 511/724 atomic regions from SNP 153109 to 153709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,741 DEBUG Processing 429/686 atomic regions from SNP 128570 to 129170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,741 DEBUG Processing 86/638 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:01,749 DEBUG Processing 560/826 atomic regions from SNP 167920 to 168520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,769 DEBUG Processing 480/708 atomic regions from SNP 143833 to 144433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,958 DEBUG Processing 512/724 atomic regions from SNP 153409 to 154009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,989 DEBUG Processing 430/686 atomic regions from SNP 128870 to 129470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,991 DEBUG Processing 87/638 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:02,017 DEBUG Processing 481/708 atomic regions from SNP 144133 to 144733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,027 DEBUG Processing 561/826 atomic regions from SNP 168220 to 168820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,179 DEBUG Processing 513/724 atomic regions from SNP 153709 to 154309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,219 DEBUG Processing 88/638 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:02,240 DEBUG Processing 482/708 atomic regions from SNP 144433 to 145033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,240 DEBUG Processing 431/686 atomic regions from SNP 129170 to 129770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,286 DEBUG Processing 562/826 atomic regions from SNP 168520 to 169120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,403 DEBUG Processing 514/724 atomic regions from SNP 154009 to 154609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,447 DEBUG Processing 89/638 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:02,457 DEBUG Processing 483/708 atomic regions from SNP 144733 to 145333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,485 DEBUG Processing 432/686 atomic regions from SNP 129470 to 130070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,537 DEBUG Processing 563/826 atomic regions from SNP 168820 to 169420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,631 DEBUG Processing 515/724 atomic regions from SNP 154309 to 154909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,672 DEBUG Processing 90/638 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:02,674 DEBUG Processing 484/708 atomic regions from SNP 145033 to 145633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,707 DEBUG Processing 433/686 atomic regions from SNP 129770 to 130370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,782 DEBUG Processing 564/826 atomic regions from SNP 169120 to 169720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,869 DEBUG Processing 516/724 atomic regions from SNP 154609 to 155209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,907 DEBUG Processing 91/638 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:02,910 DEBUG Processing 485/708 atomic regions from SNP 145333 to 145933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,947 DEBUG Processing 434/686 atomic regions from SNP 130070 to 130670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,038 DEBUG Processing 565/826 atomic regions from SNP 169420 to 170020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,111 DEBUG Processing 517/724 atomic regions from SNP 154909 to 155509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,140 DEBUG Processing 92/638 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:03,155 DEBUG Processing 486/708 atomic regions from SNP 145633 to 146233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,195 DEBUG Processing 435/686 atomic regions from SNP 130370 to 130970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,293 DEBUG Processing 566/826 atomic regions from SNP 169720 to 170320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,340 DEBUG Processing 518/724 atomic regions from SNP 155209 to 155809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,377 DEBUG Processing 93/638 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:03,386 DEBUG Processing 487/708 atomic regions from SNP 145933 to 146533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,431 DEBUG Processing 436/686 atomic regions from SNP 130670 to 131270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,556 DEBUG Processing 567/826 atomic regions from SNP 170020 to 170620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,573 DEBUG Processing 519/724 atomic regions from SNP 155509 to 156109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,612 DEBUG Processing 94/638 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:03,620 DEBUG Processing 488/708 atomic regions from SNP 146233 to 146833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,664 DEBUG Processing 437/686 atomic regions from SNP 130970 to 131570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,808 DEBUG Processing 520/724 atomic regions from SNP 155809 to 156409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,822 DEBUG Processing 568/826 atomic regions from SNP 170320 to 170920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,852 DEBUG Processing 95/638 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:03,852 DEBUG Processing 489/708 atomic regions from SNP 146533 to 147133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,895 DEBUG Processing 438/686 atomic regions from SNP 131270 to 131870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,896 DEBUG chr9 total SNP count: 213621 2025-01-31 09:48:03,896 DEBUG chr9 length: 124595110 2025-01-31 09:48:03,896 DEBUG ----------------------------------------- 2025-01-31 09:48:03,896 INFO Processing SNPs in chr9 2025-01-31 09:48:04,066 DEBUG Processing 521/724 atomic regions from SNP 156109 to 156709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,101 DEBUG Processing 96/638 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:04,103 DEBUG Processing 490/708 atomic regions from SNP 146833 to 147433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,107 DEBUG Processing 569/826 atomic regions from SNP 170620 to 171220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,117 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 213621)] 2025-01-31 09:48:04,130 DEBUG Processing 439/686 atomic regions from SNP 131570 to 132170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,268 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:04,304 DEBUG Processing 522/724 atomic regions from SNP 156409 to 157009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,343 DEBUG Processing 97/638 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:04,344 DEBUG Processing 491/708 atomic regions from SNP 147133 to 147733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,369 DEBUG Processing 440/686 atomic regions from SNP 131870 to 132470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,385 DEBUG Processing 570/826 atomic regions from SNP 170920 to 171520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,526 DEBUG Processing 523/724 atomic regions from SNP 156709 to 157309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,572 DEBUG Processing 492/708 atomic regions from SNP 147433 to 148033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,581 DEBUG Processing 98/638 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:04,606 DEBUG Processing 441/686 atomic regions from SNP 132170 to 132770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,647 DEBUG Processing 571/826 atomic regions from SNP 171220 to 171820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,738 DEBUG Processing 524/724 atomic regions from SNP 157009 to 157609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,794 DEBUG Processing 493/708 atomic regions from SNP 147733 to 148333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,816 DEBUG Processing 99/638 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:04,833 DEBUG Processing 442/686 atomic regions from SNP 132470 to 133070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,905 DEBUG Processing 572/826 atomic regions from SNP 171520 to 172120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,962 DEBUG Processing 525/724 atomic regions from SNP 157309 to 157909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,010 DEBUG Processing 494/708 atomic regions from SNP 148033 to 148633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,033 DEBUG Processing 100/638 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:05,052 DEBUG Processing 443/686 atomic regions from SNP 132770 to 133370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,165 DEBUG Processing 573/826 atomic regions from SNP 171820 to 172420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,191 DEBUG Processing 526/724 atomic regions from SNP 157609 to 158209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,236 DEBUG Processing 495/708 atomic regions from SNP 148333 to 148933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,255 DEBUG Processing 101/638 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:05,277 DEBUG Processing 444/686 atomic regions from SNP 133070 to 133670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,418 DEBUG Processing 527/724 atomic regions from SNP 157909 to 158509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,423 DEBUG Processing 574/826 atomic regions from SNP 172120 to 172720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,469 DEBUG Processing 496/708 atomic regions from SNP 148633 to 149233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,487 DEBUG Processing 102/638 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:05,509 DEBUG Processing 445/686 atomic regions from SNP 133370 to 133970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,630 DEBUG Processing 528/724 atomic regions from SNP 158209 to 158809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,677 DEBUG Processing 575/826 atomic regions from SNP 172420 to 173020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,689 DEBUG Processing 497/708 atomic regions from SNP 148933 to 149533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,718 DEBUG Processing 103/638 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:05,738 DEBUG Processing 446/686 atomic regions from SNP 133670 to 134270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,845 DEBUG Processing 529/724 atomic regions from SNP 158509 to 159109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,904 DEBUG Processing 498/708 atomic regions from SNP 149233 to 149833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,935 DEBUG Processing 576/826 atomic regions from SNP 172720 to 173320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,949 DEBUG Processing 104/638 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:05,965 DEBUG Processing 447/686 atomic regions from SNP 133970 to 134570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,072 DEBUG Processing 530/724 atomic regions from SNP 158809 to 159409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,127 DEBUG Processing 499/708 atomic regions from SNP 149533 to 150133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,175 DEBUG Processing 105/638 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:06,189 DEBUG Processing 577/826 atomic regions from SNP 173020 to 173620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,195 DEBUG Processing 448/686 atomic regions from SNP 134270 to 134870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,291 DEBUG Processing 531/724 atomic regions from SNP 159109 to 159709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,355 DEBUG Processing 500/708 atomic regions from SNP 149833 to 150433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,412 DEBUG Processing 106/638 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:06,433 DEBUG Processing 449/686 atomic regions from SNP 134570 to 135170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,451 DEBUG Processing 578/826 atomic regions from SNP 173320 to 173920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,507 DEBUG Processing 532/724 atomic regions from SNP 159409 to 160009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,573 DEBUG Processing 501/708 atomic regions from SNP 150133 to 150733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,645 DEBUG Processing 107/638 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:06,669 DEBUG Processing 450/686 atomic regions from SNP 134870 to 135470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,714 DEBUG Processing 579/826 atomic regions from SNP 173620 to 174220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,728 DEBUG Processing 533/724 atomic regions from SNP 159709 to 160309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,803 DEBUG Processing 502/708 atomic regions from SNP 150433 to 151033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,862 DEBUG Processing 108/638 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:06,904 DEBUG Processing 451/686 atomic regions from SNP 135170 to 135770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,956 DEBUG Processing 534/724 atomic regions from SNP 160009 to 160609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,974 DEBUG Processing 580/826 atomic regions from SNP 173920 to 174520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,043 DEBUG Processing 503/708 atomic regions from SNP 150733 to 151333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,081 DEBUG Processing 109/638 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:07,137 DEBUG Processing 452/686 atomic regions from SNP 135470 to 136070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,185 DEBUG Processing 535/724 atomic regions from SNP 160309 to 160909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,228 DEBUG Processing 581/826 atomic regions from SNP 174220 to 174820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,265 DEBUG Processing 504/708 atomic regions from SNP 151033 to 151633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,311 DEBUG Processing 110/638 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:07,370 DEBUG Processing 453/686 atomic regions from SNP 135770 to 136370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,414 DEBUG Processing 536/724 atomic regions from SNP 160609 to 161209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,486 DEBUG Processing 505/708 atomic regions from SNP 151333 to 151933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,489 DEBUG Processing 582/826 atomic regions from SNP 174520 to 175120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,537 DEBUG Processing 111/638 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:07,597 DEBUG Processing 454/686 atomic regions from SNP 136070 to 136670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,635 DEBUG Processing 537/724 atomic regions from SNP 160909 to 161509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,720 DEBUG Processing 506/708 atomic regions from SNP 151633 to 152233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,743 DEBUG Processing 583/826 atomic regions from SNP 174820 to 175420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,768 DEBUG Processing 112/638 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:07,827 DEBUG Processing 455/686 atomic regions from SNP 136370 to 136970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,858 DEBUG Processing 538/724 atomic regions from SNP 161209 to 161809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,960 DEBUG Processing 507/708 atomic regions from SNP 151933 to 152533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,992 DEBUG Processing 584/826 atomic regions from SNP 175120 to 175720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,992 DEBUG Processing 113/638 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:08,059 DEBUG Processing 456/686 atomic regions from SNP 136670 to 137270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,082 DEBUG Processing 539/724 atomic regions from SNP 161509 to 162109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,190 DEBUG Processing 508/708 atomic regions from SNP 152233 to 152833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,212 DEBUG Processing 114/638 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:08,242 DEBUG Processing 585/826 atomic regions from SNP 175420 to 176020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,297 DEBUG Processing 457/686 atomic regions from SNP 136970 to 137570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,313 DEBUG Processing 540/724 atomic regions from SNP 161809 to 162409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,406 DEBUG Processing 509/708 atomic regions from SNP 152533 to 153133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,454 DEBUG Processing 115/638 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:08,497 DEBUG Processing 586/826 atomic regions from SNP 175720 to 176320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,529 DEBUG Processing 458/686 atomic regions from SNP 137270 to 137870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,552 DEBUG Processing 541/724 atomic regions from SNP 162109 to 162709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,649 DEBUG Processing 510/708 atomic regions from SNP 152833 to 153433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,677 DEBUG Processing 116/638 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:08,746 DEBUG Processing 587/826 atomic regions from SNP 176020 to 176620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,753 DEBUG Processing 459/686 atomic regions from SNP 137570 to 138170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,772 DEBUG Processing 542/724 atomic regions from SNP 162409 to 163009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,876 DEBUG Processing 511/708 atomic regions from SNP 153133 to 153733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,902 DEBUG Processing 117/638 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:08,976 DEBUG Processing 460/686 atomic regions from SNP 137870 to 138470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,994 DEBUG Processing 543/724 atomic regions from SNP 162709 to 163309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,002 DEBUG Processing 588/826 atomic regions from SNP 176320 to 176920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,102 DEBUG Processing 512/708 atomic regions from SNP 153433 to 154033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,122 DEBUG Processing 118/638 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:09,207 DEBUG Processing 461/686 atomic regions from SNP 138170 to 138770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,217 DEBUG Processing 544/724 atomic regions from SNP 163009 to 163609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,257 DEBUG Processing 589/826 atomic regions from SNP 176620 to 177220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,325 DEBUG Processing 513/708 atomic regions from SNP 153733 to 154333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,342 DEBUG Processing 119/638 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:09,437 DEBUG Processing 462/686 atomic regions from SNP 138470 to 139070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,445 DEBUG Processing 545/724 atomic regions from SNP 163309 to 163909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,505 DEBUG Processing 590/826 atomic regions from SNP 176920 to 177520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,540 DEBUG Processing 514/708 atomic regions from SNP 154033 to 154633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,563 DEBUG Processing 120/638 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:09,667 DEBUG Processing 546/724 atomic regions from SNP 163609 to 164209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,669 DEBUG Processing 463/686 atomic regions from SNP 138770 to 139370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,756 DEBUG Processing 591/826 atomic regions from SNP 177220 to 177820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,762 DEBUG Processing 515/708 atomic regions from SNP 154333 to 154933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,782 DEBUG Processing 121/638 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:09,887 DEBUG Processing 547/724 atomic regions from SNP 163909 to 164509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,894 DEBUG Processing 464/686 atomic regions from SNP 139070 to 139670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,994 DEBUG Processing 516/708 atomic regions from SNP 154633 to 155233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,011 DEBUG Processing 122/638 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:10,020 DEBUG Processing 592/826 atomic regions from SNP 177520 to 178120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,104 DEBUG Processing 548/724 atomic regions from SNP 164209 to 164809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,115 DEBUG Processing 465/686 atomic regions from SNP 139370 to 139970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:10,222 DEBUG Processing 517/708 atomic regions from SNP 154933 to 155533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,255 DEBUG Processing 123/638 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:10,294 DEBUG Processing 593/826 atomic regions from SNP 177820 to 178420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,336 DEBUG Processing 549/724 atomic regions from SNP 164509 to 165109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,349 DEBUG Processing 466/686 atomic regions from SNP 139670 to 140270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:10,445 DEBUG Processing 518/708 atomic regions from SNP 155233 to 155833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,533 DEBUG Processing 124/638 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:10,619 DEBUG Processing 550/724 atomic regions from SNP 164809 to 165409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,632 DEBUG Processing 594/826 atomic regions from SNP 178120 to 178720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,639 DEBUG Processing 467/686 atomic regions from SNP 139970 to 140570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:10,726 DEBUG Processing 519/708 atomic regions from SNP 155533 to 156133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,807 DEBUG Processing 125/638 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:10,912 DEBUG Processing 551/724 atomic regions from SNP 165109 to 165709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,975 DEBUG Processing 468/686 atomic regions from SNP 140270 to 140870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:11,002 DEBUG Processing 595/826 atomic regions from SNP 178420 to 179020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,059 DEBUG Processing 520/708 atomic regions from SNP 155833 to 156433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:11,129 DEBUG Processing 126/638 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:11,222 DEBUG Processing 552/724 atomic regions from SNP 165409 to 166009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,314 DEBUG Processing 469/686 atomic regions from SNP 140570 to 141170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:11,364 DEBUG Processing 596/826 atomic regions from SNP 178720 to 179320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,395 DEBUG Processing 521/708 atomic regions from SNP 156133 to 156733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:11,491 DEBUG Processing 127/638 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:11,552 DEBUG Processing 553/724 atomic regions from SNP 165709 to 166309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,662 DEBUG Processing 470/686 atomic regions from SNP 140870 to 141470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:11,705 DEBUG Processing 522/708 atomic regions from SNP 156433 to 157033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:11,721 DEBUG Processing 597/826 atomic regions from SNP 179020 to 179620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,776 DEBUG Processing 128/638 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:11,804 DEBUG Processing 554/724 atomic regions from SNP 166009 to 166609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,961 DEBUG Processing 471/686 atomic regions from SNP 141170 to 141770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:12,010 DEBUG Processing 523/708 atomic regions from SNP 156733 to 157333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:12,079 DEBUG Processing 598/826 atomic regions from SNP 179320 to 179920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,121 DEBUG Processing 129/638 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:12,142 DEBUG Processing 555/724 atomic regions from SNP 166309 to 166909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,275 DEBUG Processing 472/686 atomic regions from SNP 141470 to 142070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:12,303 DEBUG Processing 524/708 atomic regions from SNP 157033 to 157633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:12,463 DEBUG Processing 599/826 atomic regions from SNP 179620 to 180220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,469 DEBUG Processing 130/638 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:12,481 DEBUG Processing 556/724 atomic regions from SNP 166609 to 167209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,625 DEBUG Processing 525/708 atomic regions from SNP 157333 to 157933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:12,628 DEBUG Processing 473/686 atomic regions from SNP 141770 to 142370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:12,716 DEBUG Processing 131/638 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:12,717 DEBUG Processing 557/724 atomic regions from SNP 166909 to 167509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,736 DEBUG Processing 600/826 atomic regions from SNP 179920 to 180520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,856 DEBUG Processing 526/708 atomic regions from SNP 157633 to 158233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:12,863 DEBUG Processing 474/686 atomic regions from SNP 142070 to 142670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:12,945 DEBUG Processing 558/724 atomic regions from SNP 167209 to 167809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,946 DEBUG Processing 132/638 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:12,996 DEBUG Processing 601/826 atomic regions from SNP 180220 to 180820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,075 DEBUG Processing 527/708 atomic regions from SNP 157933 to 158533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:13,087 DEBUG Processing 475/686 atomic regions from SNP 142370 to 142970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:13,222 DEBUG Processing 559/724 atomic regions from SNP 167509 to 168109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,266 DEBUG Processing 133/638 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:13,334 DEBUG Processing 602/826 atomic regions from SNP 180520 to 181120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,371 DEBUG Processing 528/708 atomic regions from SNP 158233 to 158833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:13,408 DEBUG Processing 476/686 atomic regions from SNP 142670 to 143270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:13,496 DEBUG Processing 560/724 atomic regions from SNP 167809 to 168409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,605 DEBUG Processing 134/638 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:13,687 DEBUG Processing 603/826 atomic regions from SNP 180820 to 181420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,701 DEBUG Processing 529/708 atomic regions from SNP 158533 to 159133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:13,765 DEBUG Processing 477/686 atomic regions from SNP 142970 to 143570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:13,808 DEBUG Processing 561/724 atomic regions from SNP 168109 to 168709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,930 DEBUG Processing 135/638 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:13,983 DEBUG Processing 530/708 atomic regions from SNP 158833 to 159433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:14,011 DEBUG Processing 604/826 atomic regions from SNP 181120 to 181720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,044 DEBUG Processing 478/686 atomic regions from SNP 143270 to 143870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:14,049 DEBUG Processing 562/724 atomic regions from SNP 168409 to 169009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,169 DEBUG Processing 136/638 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:14,216 DEBUG Processing 531/708 atomic regions from SNP 159133 to 159733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:14,276 DEBUG Processing 605/826 atomic regions from SNP 181420 to 182020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,290 DEBUG Processing 563/724 atomic regions from SNP 168709 to 169309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,294 DEBUG Processing 479/686 atomic regions from SNP 143570 to 144170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:14,432 DEBUG Processing 137/638 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:14,485 DEBUG Processing 532/708 atomic regions from SNP 159433 to 160033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:14,564 DEBUG Processing 564/724 atomic regions from SNP 169009 to 169609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,571 DEBUG Processing 606/826 atomic regions from SNP 181720 to 182320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,573 DEBUG Processing 480/686 atomic regions from SNP 143870 to 144470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:14,675 DEBUG Processing 138/638 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:14,710 DEBUG Processing 533/708 atomic regions from SNP 159733 to 160333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:14,801 DEBUG Processing 565/724 atomic regions from SNP 169309 to 169909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,814 DEBUG Processing 481/686 atomic regions from SNP 144170 to 144770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:14,828 DEBUG Processing 607/826 atomic regions from SNP 182020 to 182620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,922 DEBUG Processing 139/638 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:14,934 DEBUG Processing 534/708 atomic regions from SNP 160033 to 160633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:15,025 DEBUG Processing 566/724 atomic regions from SNP 169609 to 170209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,039 DEBUG Processing 482/686 atomic regions from SNP 144470 to 145070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:15,092 DEBUG Processing 608/826 atomic regions from SNP 182320 to 182920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,202 DEBUG Processing 140/638 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:15,204 DEBUG Processing 535/708 atomic regions from SNP 160333 to 160933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:15,283 DEBUG Processing 567/724 atomic regions from SNP 169909 to 170509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,297 DEBUG Processing 483/686 atomic regions from SNP 144770 to 145370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:15,358 DEBUG Processing 609/826 atomic regions from SNP 182620 to 183220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,475 DEBUG Processing 536/708 atomic regions from SNP 160633 to 161233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:15,489 DEBUG Processing 141/638 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:15,603 DEBUG Processing 568/724 atomic regions from SNP 170209 to 170809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,620 DEBUG Processing 484/686 atomic regions from SNP 145070 to 145670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:15,677 DEBUG Processing 610/826 atomic regions from SNP 182920 to 183520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,751 DEBUG Processing 537/708 atomic regions from SNP 160933 to 161533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:15,807 DEBUG Processing 142/638 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:15,871 DEBUG Processing 569/724 atomic regions from SNP 170509 to 171109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,894 DEBUG Processing 485/686 atomic regions from SNP 145370 to 145970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:15,950 DEBUG Processing 611/826 atomic regions from SNP 183220 to 183820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,973 DEBUG Processing 538/708 atomic regions from SNP 161233 to 161833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:16,082 DEBUG Processing 143/638 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:16,110 DEBUG Processing 570/724 atomic regions from SNP 170809 to 171409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,161 DEBUG Processing 486/686 atomic regions from SNP 145670 to 146270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:16,246 DEBUG Processing 539/708 atomic regions from SNP 161533 to 162133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:16,269 DEBUG Processing 612/826 atomic regions from SNP 183520 to 184120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,335 DEBUG Processing 144/638 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:16,336 DEBUG Processing 571/724 atomic regions from SNP 171109 to 171709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,384 DEBUG Processing 487/686 atomic regions from SNP 145970 to 146570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:16,472 DEBUG Processing 540/708 atomic regions from SNP 161833 to 162433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:16,519 DEBUG Processing 613/826 atomic regions from SNP 183820 to 184420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,566 DEBUG Processing 572/724 atomic regions from SNP 171409 to 172009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,567 DEBUG Processing 145/638 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:16,609 DEBUG Processing 488/686 atomic regions from SNP 146270 to 146870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:16,683 DEBUG Processing 541/708 atomic regions from SNP 162133 to 162733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:16,764 DEBUG Processing 614/826 atomic regions from SNP 184120 to 184720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,788 DEBUG Processing 573/724 atomic regions from SNP 171709 to 172309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,791 DEBUG Processing 146/638 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:16,835 DEBUG Processing 489/686 atomic regions from SNP 146570 to 147170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:16,891 DEBUG Processing 542/708 atomic regions from SNP 162433 to 163033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:17,008 DEBUG Processing 574/724 atomic regions from SNP 172009 to 172609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,018 DEBUG Processing 615/826 atomic regions from SNP 184420 to 185020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,018 DEBUG Processing 147/638 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:17,064 DEBUG Processing 490/686 atomic regions from SNP 146870 to 147470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,110 DEBUG Processing 543/708 atomic regions from SNP 162733 to 163333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:17,228 DEBUG Processing 575/724 atomic regions from SNP 172309 to 172909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,254 DEBUG Processing 148/638 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:17,283 DEBUG Processing 616/826 atomic regions from SNP 184720 to 185320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,294 DEBUG Processing 491/686 atomic regions from SNP 147170 to 147770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,335 DEBUG Processing 544/708 atomic regions from SNP 163033 to 163633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:17,445 DEBUG Processing 576/724 atomic regions from SNP 172609 to 173209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,467 DEBUG Processing 149/638 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:17,524 DEBUG Processing 492/686 atomic regions from SNP 147470 to 148070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,538 DEBUG Processing 617/826 atomic regions from SNP 185020 to 185620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,565 DEBUG Processing 545/708 atomic regions from SNP 163333 to 163933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:17,670 DEBUG Processing 577/724 atomic regions from SNP 172909 to 173509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,682 DEBUG Processing 150/638 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:17,756 DEBUG Processing 493/686 atomic regions from SNP 147770 to 148370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,784 DEBUG Processing 618/826 atomic regions from SNP 185320 to 185920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,788 DEBUG Processing 546/708 atomic regions from SNP 163633 to 164233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:17,893 DEBUG Processing 578/724 atomic regions from SNP 173209 to 173809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,900 DEBUG Processing 151/638 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:17,985 DEBUG Processing 494/686 atomic regions from SNP 148070 to 148670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,011 DEBUG Processing 547/708 atomic regions from SNP 163933 to 164533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,044 DEBUG Processing 619/826 atomic regions from SNP 185620 to 186220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,111 DEBUG Processing 579/724 atomic regions from SNP 173509 to 174109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,117 DEBUG Processing 152/638 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:18,211 DEBUG Processing 495/686 atomic regions from SNP 148370 to 148970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,237 DEBUG Processing 548/708 atomic regions from SNP 164233 to 164833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,310 DEBUG Processing 620/826 atomic regions from SNP 185920 to 186520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,332 DEBUG Processing 153/638 atomic regions from SNP 45752 to 46353 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:18,335 DEBUG Processing 580/724 atomic regions from SNP 173809 to 174409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,447 DEBUG Processing 496/686 atomic regions from SNP 148670 to 149270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,462 DEBUG Processing 549/708 atomic regions from SNP 164533 to 165133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,550 DEBUG Processing 154/638 atomic regions from SNP 46053 to 46654 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:18,560 DEBUG Processing 581/724 atomic regions from SNP 174109 to 174709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,586 DEBUG Processing 621/826 atomic regions from SNP 186220 to 186820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,668 DEBUG Processing 497/686 atomic regions from SNP 148970 to 149570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,679 DEBUG Processing 550/708 atomic regions from SNP 164833 to 165433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,770 DEBUG Processing 155/638 atomic regions from SNP 46354 to 46955 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:18,785 DEBUG Processing 582/724 atomic regions from SNP 174409 to 175009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,861 DEBUG Processing 622/826 atomic regions from SNP 186520 to 187120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,891 DEBUG Processing 498/686 atomic regions from SNP 149270 to 149870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,895 DEBUG Processing 551/708 atomic regions from SNP 165133 to 165733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,986 DEBUG Processing 156/638 atomic regions from SNP 46655 to 47256 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:19,001 DEBUG Processing 583/724 atomic regions from SNP 174709 to 175309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,110 DEBUG Processing 552/708 atomic regions from SNP 165433 to 166033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:19,111 DEBUG Processing 499/686 atomic regions from SNP 149570 to 150170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,122 DEBUG Processing 623/826 atomic regions from SNP 186820 to 187420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,189 DEBUG Processing 157/638 atomic regions from SNP 46956 to 47557 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:19,220 DEBUG Processing 584/724 atomic regions from SNP 175009 to 175609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,320 DEBUG Processing 553/708 atomic regions from SNP 165733 to 166333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:19,330 DEBUG Processing 500/686 atomic regions from SNP 149870 to 150470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,371 DEBUG Processing 624/826 atomic regions from SNP 187120 to 187720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,416 DEBUG Processing 158/638 atomic regions from SNP 47257 to 47858 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:19,441 DEBUG Processing 585/724 atomic regions from SNP 175309 to 175909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,538 DEBUG Processing 554/708 atomic regions from SNP 166033 to 166633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:19,555 DEBUG Processing 501/686 atomic regions from SNP 150170 to 150770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,626 DEBUG Processing 625/826 atomic regions from SNP 187420 to 188020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,661 DEBUG Processing 586/724 atomic regions from SNP 175609 to 176209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,664 DEBUG Processing 159/638 atomic regions from SNP 47558 to 48159 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:19,759 DEBUG Processing 555/708 atomic regions from SNP 166333 to 166933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:19,787 DEBUG Processing 502/686 atomic regions from SNP 150470 to 151070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,864 DEBUG Processing 626/826 atomic regions from SNP 187720 to 188320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,878 DEBUG Processing 160/638 atomic regions from SNP 47859 to 48460 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:19,879 DEBUG Processing 587/724 atomic regions from SNP 175909 to 176509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,974 DEBUG Processing 556/708 atomic regions from SNP 166633 to 167233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:20,007 DEBUG Processing 503/686 atomic regions from SNP 150770 to 151370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,091 DEBUG Processing 161/638 atomic regions from SNP 48160 to 48761 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:20,100 DEBUG Processing 588/724 atomic regions from SNP 176209 to 176809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,101 DEBUG Processing 627/826 atomic regions from SNP 188020 to 188620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,189 DEBUG Processing 557/708 atomic regions from SNP 166933 to 167533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:20,229 DEBUG Processing 504/686 atomic regions from SNP 151070 to 151670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,306 DEBUG Processing 162/638 atomic regions from SNP 48461 to 49062 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:20,321 DEBUG Processing 589/724 atomic regions from SNP 176509 to 177109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,341 DEBUG Processing 628/826 atomic regions from SNP 188320 to 188920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,409 DEBUG Processing 558/708 atomic regions from SNP 167233 to 167833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:20,455 DEBUG Processing 505/686 atomic regions from SNP 151370 to 151970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,533 DEBUG Processing 163/638 atomic regions from SNP 48762 to 49363 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:20,549 DEBUG Processing 590/724 atomic regions from SNP 176809 to 177409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,598 DEBUG Processing 629/826 atomic regions from SNP 188620 to 189220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,637 DEBUG Processing 559/708 atomic regions from SNP 167533 to 168133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:20,685 DEBUG Processing 506/686 atomic regions from SNP 151670 to 152270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,743 DEBUG Processing 164/638 atomic regions from SNP 49063 to 49664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:20,764 DEBUG Processing 591/724 atomic regions from SNP 177109 to 177709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,838 DEBUG Processing 630/826 atomic regions from SNP 188920 to 189520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,854 DEBUG Processing 560/708 atomic regions from SNP 167833 to 168433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:20,910 DEBUG Processing 507/686 atomic regions from SNP 151970 to 152570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,955 DEBUG Processing 165/638 atomic regions from SNP 49364 to 49965 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:20,990 DEBUG Processing 592/724 atomic regions from SNP 177409 to 178009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,070 DEBUG Processing 561/708 atomic regions from SNP 168133 to 168733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:21,079 DEBUG Processing 631/826 atomic regions from SNP 189220 to 189820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,132 DEBUG Processing 508/686 atomic regions from SNP 152270 to 152870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,173 DEBUG Processing 166/638 atomic regions from SNP 49665 to 50266 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:21,210 DEBUG Processing 593/724 atomic regions from SNP 177709 to 178309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,291 DEBUG Processing 562/708 atomic regions from SNP 168433 to 169033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:21,319 DEBUG Processing 632/826 atomic regions from SNP 189520 to 190120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,359 DEBUG Processing 509/686 atomic regions from SNP 152570 to 153170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,383 DEBUG Processing 167/638 atomic regions from SNP 49966 to 50567 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:21,420 DEBUG Processing 594/724 atomic regions from SNP 178009 to 178609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,523 DEBUG Processing 563/708 atomic regions from SNP 168733 to 169333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:21,564 DEBUG Processing 633/826 atomic regions from SNP 189820 to 190420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,590 DEBUG Processing 510/686 atomic regions from SNP 152870 to 153470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,601 DEBUG Processing 168/638 atomic regions from SNP 50267 to 50868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:21,637 DEBUG Processing 595/724 atomic regions from SNP 178309 to 178909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,768 DEBUG Processing 564/708 atomic regions from SNP 169033 to 169633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:21,833 DEBUG Processing 511/686 atomic regions from SNP 153170 to 153770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,836 DEBUG Processing 169/638 atomic regions from SNP 50568 to 51169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:21,836 DEBUG Processing 634/826 atomic regions from SNP 190120 to 190720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,876 DEBUG Processing 596/724 atomic regions from SNP 178609 to 179209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,017 DEBUG Processing 565/708 atomic regions from SNP 169333 to 169933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,063 DEBUG Processing 170/638 atomic regions from SNP 50869 to 51470 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:22,072 DEBUG Processing 512/686 atomic regions from SNP 153470 to 154070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,103 DEBUG Processing 635/826 atomic regions from SNP 190420 to 191020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,110 DEBUG Processing 597/724 atomic regions from SNP 178909 to 179509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,259 DEBUG Processing 566/708 atomic regions from SNP 169633 to 170233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,280 DEBUG Processing 171/638 atomic regions from SNP 51170 to 51771 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:22,302 DEBUG Processing 513/686 atomic regions from SNP 153770 to 154370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,331 DEBUG Processing 598/724 atomic regions from SNP 179209 to 179809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,372 DEBUG Processing 636/826 atomic regions from SNP 190720 to 191320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,497 DEBUG Processing 172/638 atomic regions from SNP 51471 to 52072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:22,504 DEBUG Processing 567/708 atomic regions from SNP 169933 to 170533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,531 DEBUG Processing 514/686 atomic regions from SNP 154070 to 154670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,551 DEBUG Processing 599/724 atomic regions from SNP 179509 to 180109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,638 DEBUG Processing 637/826 atomic regions from SNP 191020 to 191620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,762 DEBUG Processing 173/638 atomic regions from SNP 51772 to 52373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:22,775 DEBUG Processing 568/708 atomic regions from SNP 170233 to 170833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,808 DEBUG Processing 515/686 atomic regions from SNP 154370 to 154970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,822 DEBUG Processing 600/724 atomic regions from SNP 179809 to 180409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,941 DEBUG Processing 638/826 atomic regions from SNP 191320 to 191920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,063 DEBUG Processing 174/638 atomic regions from SNP 52073 to 52674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:23,090 DEBUG Processing 569/708 atomic regions from SNP 170533 to 171133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,108 DEBUG Processing 516/686 atomic regions from SNP 154670 to 155270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,112 DEBUG Processing 601/724 atomic regions from SNP 180109 to 180709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,212 DEBUG Processing 639/826 atomic regions from SNP 191620 to 192220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,286 DEBUG Processing 175/638 atomic regions from SNP 52374 to 52975 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:23,317 DEBUG Processing 570/708 atomic regions from SNP 170833 to 171433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,339 DEBUG Processing 517/686 atomic regions from SNP 154970 to 155570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,341 DEBUG Processing 602/724 atomic regions from SNP 180409 to 181009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,461 DEBUG Processing 640/826 atomic regions from SNP 191920 to 192520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,507 DEBUG Processing 176/638 atomic regions from SNP 52675 to 53276 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:23,538 DEBUG Processing 571/708 atomic regions from SNP 171133 to 171733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,567 DEBUG Processing 603/724 atomic regions from SNP 180709 to 181309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,568 DEBUG Processing 518/686 atomic regions from SNP 155270 to 155870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,707 DEBUG Processing 641/826 atomic regions from SNP 192220 to 192820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,732 DEBUG Processing 177/638 atomic regions from SNP 52976 to 53577 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:23,761 DEBUG Processing 572/708 atomic regions from SNP 171433 to 172033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,796 DEBUG Processing 604/724 atomic regions from SNP 181009 to 181609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,802 DEBUG Processing 519/686 atomic regions from SNP 155570 to 156170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,959 DEBUG Processing 178/638 atomic regions from SNP 53277 to 53878 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:23,964 DEBUG Processing 642/826 atomic regions from SNP 192520 to 193120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,980 DEBUG Processing 573/708 atomic regions from SNP 171733 to 172333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,020 DEBUG Processing 605/724 atomic regions from SNP 181309 to 181909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,029 DEBUG Processing 520/686 atomic regions from SNP 155870 to 156470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,188 DEBUG Processing 179/638 atomic regions from SNP 53578 to 54179 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:24,211 DEBUG Processing 574/708 atomic regions from SNP 172033 to 172633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,220 DEBUG Processing 643/826 atomic regions from SNP 192820 to 193420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,247 DEBUG Processing 606/724 atomic regions from SNP 181609 to 182209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,257 DEBUG Processing 521/686 atomic regions from SNP 156170 to 156770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,417 DEBUG Processing 180/638 atomic regions from SNP 53879 to 54480 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:24,446 DEBUG Processing 575/708 atomic regions from SNP 172333 to 172933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,486 DEBUG Processing 607/724 atomic regions from SNP 181909 to 182509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,487 DEBUG Processing 644/826 atomic regions from SNP 193120 to 193720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,506 DEBUG Processing 522/686 atomic regions from SNP 156470 to 157070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,630 DEBUG Processing 181/638 atomic regions from SNP 54180 to 54781 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:24,680 DEBUG Processing 576/708 atomic regions from SNP 172633 to 173233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,718 DEBUG Processing 608/724 atomic regions from SNP 182209 to 182809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,735 DEBUG Processing 645/826 atomic regions from SNP 193420 to 194020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,745 DEBUG Processing 523/686 atomic regions from SNP 156770 to 157370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,852 DEBUG Processing 182/638 atomic regions from SNP 54481 to 55082 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:24,919 DEBUG Processing 577/708 atomic regions from SNP 172933 to 173533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,941 DEBUG Processing 609/724 atomic regions from SNP 182509 to 183109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,977 DEBUG Processing 524/686 atomic regions from SNP 157070 to 157670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,982 DEBUG Processing 646/826 atomic regions from SNP 193720 to 194320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,077 DEBUG Processing 183/638 atomic regions from SNP 54782 to 55383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:25,145 DEBUG Processing 578/708 atomic regions from SNP 173233 to 173833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,172 DEBUG Processing 610/724 atomic regions from SNP 182809 to 183409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,211 DEBUG Processing 525/686 atomic regions from SNP 157370 to 157970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,233 DEBUG Processing 647/826 atomic regions from SNP 194020 to 194620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,308 DEBUG Processing 184/638 atomic regions from SNP 55083 to 55683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:25,392 DEBUG Processing 579/708 atomic regions from SNP 173533 to 174133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,423 DEBUG Processing 611/724 atomic regions from SNP 183109 to 183709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,458 DEBUG Processing 526/686 atomic regions from SNP 157670 to 158270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,517 DEBUG Processing 648/826 atomic regions from SNP 194320 to 194920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,539 DEBUG Processing 185/638 atomic regions from SNP 55383 to 55983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:25,624 DEBUG Processing 580/708 atomic regions from SNP 173833 to 174433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,660 DEBUG Processing 612/724 atomic regions from SNP 183409 to 184009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,696 DEBUG Processing 527/686 atomic regions from SNP 157970 to 158570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,767 DEBUG Processing 186/638 atomic regions from SNP 55683 to 56283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:25,780 DEBUG Processing 649/826 atomic regions from SNP 194620 to 195220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,851 DEBUG Processing 581/708 atomic regions from SNP 174133 to 174733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,893 DEBUG Processing 613/724 atomic regions from SNP 183709 to 184309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,937 DEBUG Processing 528/686 atomic regions from SNP 158270 to 158870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,997 DEBUG Processing 187/638 atomic regions from SNP 55983 to 56583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:26,050 DEBUG Processing 650/826 atomic regions from SNP 194920 to 195520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,096 DEBUG Processing 582/708 atomic regions from SNP 174433 to 175033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,135 DEBUG Processing 614/724 atomic regions from SNP 184009 to 184609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,186 DEBUG Processing 529/686 atomic regions from SNP 158570 to 159170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,224 DEBUG Processing 188/638 atomic regions from SNP 56283 to 56883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:26,301 DEBUG Processing 651/826 atomic regions from SNP 195220 to 195820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,319 DEBUG Processing 583/708 atomic regions from SNP 174733 to 175333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,365 DEBUG Processing 615/724 atomic regions from SNP 184309 to 184909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,428 DEBUG Processing 530/686 atomic regions from SNP 158870 to 159470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,456 DEBUG Processing 189/638 atomic regions from SNP 56583 to 57183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:26,551 DEBUG Processing 584/708 atomic regions from SNP 175033 to 175633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,552 DEBUG Processing 652/826 atomic regions from SNP 195520 to 196120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,602 DEBUG Processing 616/724 atomic regions from SNP 184609 to 185209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,670 DEBUG Processing 531/686 atomic regions from SNP 159170 to 159770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,687 DEBUG Processing 190/638 atomic regions from SNP 56883 to 57483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:26,784 DEBUG Processing 585/708 atomic regions from SNP 175333 to 175933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,811 DEBUG Processing 653/826 atomic regions from SNP 195820 to 196420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,842 DEBUG Processing 617/724 atomic regions from SNP 184909 to 185509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,916 DEBUG Processing 191/638 atomic regions from SNP 57183 to 57783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:26,916 DEBUG Processing 532/686 atomic regions from SNP 159470 to 160070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,016 DEBUG Processing 586/708 atomic regions from SNP 175633 to 176233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,069 DEBUG Processing 654/826 atomic regions from SNP 196120 to 196720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,080 DEBUG Processing 618/724 atomic regions from SNP 185209 to 185809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,186 DEBUG Processing 192/638 atomic regions from SNP 57483 to 58083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:27,211 DEBUG Processing 533/686 atomic regions from SNP 159770 to 160370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,330 DEBUG Processing 587/708 atomic regions from SNP 175933 to 176533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,377 DEBUG Processing 619/724 atomic regions from SNP 185509 to 186109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,379 DEBUG Processing 655/826 atomic regions from SNP 196420 to 197020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,478 DEBUG Processing 193/638 atomic regions from SNP 57783 to 58383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:27,532 DEBUG Processing 534/686 atomic regions from SNP 160070 to 160670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,671 DEBUG Processing 588/708 atomic regions from SNP 176233 to 176833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,724 DEBUG Processing 620/724 atomic regions from SNP 185809 to 186409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,742 DEBUG Processing 656/826 atomic regions from SNP 196720 to 197320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,798 DEBUG Processing 194/638 atomic regions from SNP 58083 to 58683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:27,853 DEBUG Processing 535/686 atomic regions from SNP 160370 to 160970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,009 DEBUG Processing 589/708 atomic regions from SNP 176533 to 177133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:28,064 DEBUG Processing 621/724 atomic regions from SNP 186109 to 186709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,111 DEBUG Processing 657/826 atomic regions from SNP 197020 to 197620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,146 DEBUG Processing 195/638 atomic regions from SNP 58383 to 58983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:28,220 DEBUG Processing 536/686 atomic regions from SNP 160670 to 161270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,314 DEBUG Processing 590/708 atomic regions from SNP 176833 to 177433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:28,340 DEBUG Processing 622/724 atomic regions from SNP 186409 to 187009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,424 DEBUG Processing 658/826 atomic regions from SNP 197320 to 197920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,448 DEBUG Processing 196/638 atomic regions from SNP 58683 to 59283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:28,603 DEBUG Processing 537/686 atomic regions from SNP 160970 to 161570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,663 DEBUG Processing 591/708 atomic regions from SNP 177133 to 177733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:28,671 DEBUG Processing 623/724 atomic regions from SNP 186709 to 187309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,702 DEBUG Processing 197/638 atomic regions from SNP 58983 to 59583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:28,713 DEBUG Processing 659/826 atomic regions from SNP 197620 to 198220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,858 DEBUG Processing 538/686 atomic regions from SNP 161270 to 161870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,912 DEBUG Processing 592/708 atomic regions from SNP 177433 to 178033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:28,924 DEBUG Processing 624/724 atomic regions from SNP 187009 to 187609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,946 DEBUG Processing 198/638 atomic regions from SNP 59283 to 59883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:28,986 DEBUG Processing 660/826 atomic regions from SNP 197920 to 198520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,091 DEBUG Processing 539/686 atomic regions from SNP 161570 to 162170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,142 DEBUG Processing 593/708 atomic regions from SNP 177733 to 178333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:29,159 DEBUG Processing 625/724 atomic regions from SNP 187309 to 187909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,176 DEBUG Processing 199/638 atomic regions from SNP 59583 to 60183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:29,248 DEBUG Processing 661/826 atomic regions from SNP 198220 to 198820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,333 DEBUG Processing 540/686 atomic regions from SNP 161870 to 162470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,374 DEBUG Processing 594/708 atomic regions from SNP 178033 to 178633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:29,394 DEBUG Processing 626/724 atomic regions from SNP 187609 to 188209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,396 DEBUG Processing 200/638 atomic regions from SNP 59883 to 60483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:29,502 DEBUG Processing 662/826 atomic regions from SNP 198520 to 199120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,576 DEBUG Processing 541/686 atomic regions from SNP 162170 to 162770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,607 DEBUG Processing 595/708 atomic regions from SNP 178333 to 178933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:29,621 DEBUG Processing 201/638 atomic regions from SNP 60183 to 60783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:29,630 DEBUG Processing 627/724 atomic regions from SNP 187909 to 188509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,763 DEBUG Processing 663/826 atomic regions from SNP 198820 to 199420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,813 DEBUG Processing 542/686 atomic regions from SNP 162470 to 163070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,837 DEBUG Processing 202/638 atomic regions from SNP 60483 to 61083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:29,841 DEBUG Processing 596/708 atomic regions from SNP 178633 to 179233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:29,866 DEBUG Processing 628/724 atomic regions from SNP 188209 to 188809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,019 DEBUG Processing 664/826 atomic regions from SNP 199120 to 199720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,051 DEBUG Processing 543/686 atomic regions from SNP 162770 to 163370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,072 DEBUG Processing 597/708 atomic regions from SNP 178933 to 179533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,073 DEBUG Processing 203/638 atomic regions from SNP 60783 to 61383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:30,104 DEBUG Processing 629/724 atomic regions from SNP 188509 to 189109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,283 DEBUG Processing 204/638 atomic regions from SNP 61083 to 61683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:30,283 DEBUG Processing 665/826 atomic regions from SNP 199420 to 200020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,291 DEBUG Processing 544/686 atomic regions from SNP 163070 to 163670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,306 DEBUG Processing 598/708 atomic regions from SNP 179233 to 179833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,332 DEBUG Processing 630/724 atomic regions from SNP 188809 to 189409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,454 DEBUG Segmenting atomic regions: 2025-01-31 09:48:30,512 DEBUG Processing 205/638 atomic regions from SNP 61383 to 61983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:30,543 DEBUG Processing 545/686 atomic regions from SNP 163370 to 163970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,545 DEBUG Processing 599/708 atomic regions from SNP 179533 to 180133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,547 DEBUG Processing 666/826 atomic regions from SNP 199720 to 200320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,553 DEBUG Processing 1/711 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:30,563 DEBUG Processing 631/724 atomic regions from SNP 189109 to 189709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,738 DEBUG Processing 206/638 atomic regions from SNP 61683 to 62283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:30,786 DEBUG Processing 600/708 atomic regions from SNP 179833 to 180433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,790 DEBUG Processing 2/711 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:30,791 DEBUG Processing 546/686 atomic regions from SNP 163670 to 164270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,801 DEBUG Processing 632/724 atomic regions from SNP 189409 to 190009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,821 DEBUG Processing 667/826 atomic regions from SNP 200020 to 200620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,954 DEBUG Processing 207/638 atomic regions from SNP 61983 to 62583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:31,028 DEBUG Processing 3/711 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:31,035 DEBUG Processing 601/708 atomic regions from SNP 180133 to 180733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:31,041 DEBUG Processing 547/686 atomic regions from SNP 163970 to 164570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,045 DEBUG Processing 633/724 atomic regions from SNP 189709 to 190309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,102 DEBUG Processing 668/826 atomic regions from SNP 200320 to 200920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,175 DEBUG Processing 208/638 atomic regions from SNP 62283 to 62883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:31,264 DEBUG Processing 4/711 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:31,278 DEBUG Processing 602/708 atomic regions from SNP 180433 to 181033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:31,286 DEBUG Processing 634/724 atomic regions from SNP 190009 to 190609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,293 DEBUG Processing 548/686 atomic regions from SNP 164270 to 164870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,375 DEBUG Processing 669/826 atomic regions from SNP 200620 to 201220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,404 DEBUG Processing 209/638 atomic regions from SNP 62583 to 63183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:31,493 DEBUG Processing 5/711 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:31,518 DEBUG Processing 603/708 atomic regions from SNP 180733 to 181333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:31,523 DEBUG Processing 635/724 atomic regions from SNP 190309 to 190909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,537 DEBUG Processing 549/686 atomic regions from SNP 164570 to 165170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,634 DEBUG Processing 670/826 atomic regions from SNP 200920 to 201520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,636 DEBUG Processing 210/638 atomic regions from SNP 62883 to 63483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:31,723 DEBUG Processing 6/711 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:31,761 DEBUG Processing 636/724 atomic regions from SNP 190609 to 191209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,772 DEBUG Processing 604/708 atomic regions from SNP 181033 to 181633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:31,785 DEBUG Processing 550/686 atomic regions from SNP 164870 to 165470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,860 DEBUG Processing 211/638 atomic regions from SNP 63183 to 63783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:31,890 DEBUG Processing 671/826 atomic regions from SNP 201220 to 201820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,949 DEBUG Processing 7/711 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:31,995 DEBUG Processing 637/724 atomic regions from SNP 190909 to 191509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,021 DEBUG Processing 605/708 atomic regions from SNP 181333 to 181933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,031 DEBUG Processing 551/686 atomic regions from SNP 165170 to 165770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,075 DEBUG Processing 212/638 atomic regions from SNP 63483 to 64083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:32,132 DEBUG Processing 672/826 atomic regions from SNP 201520 to 202120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,179 DEBUG Processing 8/711 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:32,229 DEBUG Processing 638/724 atomic regions from SNP 191209 to 191809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,256 DEBUG Processing 606/708 atomic regions from SNP 181633 to 182233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,276 DEBUG Processing 552/686 atomic regions from SNP 165470 to 166070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,293 DEBUG Processing 213/638 atomic regions from SNP 63783 to 64383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:32,379 DEBUG Processing 673/826 atomic regions from SNP 201820 to 202420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,405 DEBUG Processing 9/711 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:32,457 DEBUG Processing 639/724 atomic regions from SNP 191509 to 192109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,484 DEBUG Processing 607/708 atomic regions from SNP 181933 to 182533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,508 DEBUG Processing 214/638 atomic regions from SNP 64083 to 64683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:32,517 DEBUG Processing 553/686 atomic regions from SNP 165770 to 166370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,615 DEBUG Processing 674/826 atomic regions from SNP 202120 to 202720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,627 DEBUG Processing 10/711 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:32,696 DEBUG Processing 640/724 atomic regions from SNP 191809 to 192409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,719 DEBUG Processing 608/708 atomic regions from SNP 182233 to 182833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,732 DEBUG Processing 215/638 atomic regions from SNP 64383 to 64983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:32,762 DEBUG Processing 554/686 atomic regions from SNP 166070 to 166670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,853 DEBUG Processing 675/826 atomic regions from SNP 202420 to 203020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,855 DEBUG Processing 11/711 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:32,927 DEBUG Processing 641/724 atomic regions from SNP 192109 to 192709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,947 DEBUG Processing 216/638 atomic regions from SNP 64683 to 65283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:32,948 DEBUG Processing 609/708 atomic regions from SNP 182533 to 183133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,001 DEBUG Processing 555/686 atomic regions from SNP 166370 to 166970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,082 DEBUG Processing 12/711 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:33,092 DEBUG Processing 676/826 atomic regions from SNP 202720 to 203320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,156 DEBUG Processing 642/724 atomic regions from SNP 192409 to 193009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,158 DEBUG Processing 217/638 atomic regions from SNP 64983 to 65583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:33,178 DEBUG Processing 610/708 atomic regions from SNP 182833 to 183433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,240 DEBUG Processing 556/686 atomic regions from SNP 166670 to 167270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,315 DEBUG Processing 13/711 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:33,344 DEBUG Processing 677/826 atomic regions from SNP 203020 to 203620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,366 DEBUG Processing 218/638 atomic regions from SNP 65283 to 65883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:33,385 DEBUG Processing 643/724 atomic regions from SNP 192709 to 193309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,401 DEBUG Processing 611/708 atomic regions from SNP 183133 to 183733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,473 DEBUG Processing 557/686 atomic regions from SNP 166970 to 167570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,548 DEBUG Processing 14/711 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:33,588 DEBUG Processing 219/638 atomic regions from SNP 65583 to 66183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:33,618 DEBUG Processing 644/724 atomic regions from SNP 193009 to 193609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,620 DEBUG Processing 678/826 atomic regions from SNP 203320 to 203920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,632 DEBUG Processing 612/708 atomic regions from SNP 183433 to 184033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,705 DEBUG Processing 558/686 atomic regions from SNP 167270 to 167870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,781 DEBUG Processing 15/711 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:33,821 DEBUG Processing 220/638 atomic regions from SNP 65883 to 66483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:33,860 DEBUG Processing 645/724 atomic regions from SNP 193309 to 193909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,871 DEBUG Processing 613/708 atomic regions from SNP 183733 to 184333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,879 DEBUG Processing 679/826 atomic regions from SNP 203620 to 204220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,937 DEBUG Processing 559/686 atomic regions from SNP 167570 to 168170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,003 DEBUG Processing 16/711 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,042 DEBUG Processing 221/638 atomic regions from SNP 66183 to 66783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:34,096 DEBUG Processing 646/724 atomic regions from SNP 193609 to 194209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,106 DEBUG Processing 614/708 atomic regions from SNP 184033 to 184633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:34,134 DEBUG Processing 680/826 atomic regions from SNP 203920 to 204520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,172 DEBUG Processing 560/686 atomic regions from SNP 167870 to 168470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,219 DEBUG Processing 17/711 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,253 DEBUG Processing 222/638 atomic regions from SNP 66483 to 67083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:34,334 DEBUG Processing 615/708 atomic regions from SNP 184333 to 184933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:34,335 DEBUG Processing 647/724 atomic regions from SNP 193909 to 194509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,381 DEBUG Processing 681/826 atomic regions from SNP 204220 to 204820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,411 DEBUG Processing 561/686 atomic regions from SNP 168170 to 168770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,443 DEBUG Processing 18/711 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,465 DEBUG Processing 223/638 atomic regions from SNP 66783 to 67383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:34,566 DEBUG Processing 616/708 atomic regions from SNP 184633 to 185233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:34,569 DEBUG Processing 648/724 atomic regions from SNP 194209 to 194809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,632 DEBUG Processing 682/826 atomic regions from SNP 204520 to 205120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,654 DEBUG Processing 562/686 atomic regions from SNP 168470 to 169070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,671 DEBUG Processing 19/711 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,682 DEBUG Processing 224/638 atomic regions from SNP 67083 to 67683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:34,797 DEBUG Processing 617/708 atomic regions from SNP 184933 to 185533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:34,804 DEBUG Processing 649/724 atomic regions from SNP 194509 to 195109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,888 DEBUG Processing 683/826 atomic regions from SNP 204820 to 205420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,891 DEBUG Processing 563/686 atomic regions from SNP 168770 to 169370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,898 DEBUG Processing 20/711 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,905 DEBUG Processing 225/638 atomic regions from SNP 67383 to 67983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:35,032 DEBUG Processing 618/708 atomic regions from SNP 185233 to 185833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,040 DEBUG Processing 650/724 atomic regions from SNP 194809 to 195409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,120 DEBUG Processing 226/638 atomic regions from SNP 67683 to 68283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:35,120 DEBUG Processing 21/711 atomic regions from SNP 6020 to 6620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:35,123 DEBUG Processing 564/686 atomic regions from SNP 169070 to 169670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:35,134 DEBUG Processing 684/826 atomic regions from SNP 205120 to 205720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,264 DEBUG Processing 619/708 atomic regions from SNP 185533 to 186133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,286 DEBUG Processing 651/724 atomic regions from SNP 195109 to 195709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,339 DEBUG Processing 227/638 atomic regions from SNP 67983 to 68583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:35,348 DEBUG Processing 22/711 atomic regions from SNP 6320 to 6920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:35,361 DEBUG Processing 565/686 atomic regions from SNP 169370 to 169970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:35,380 DEBUG Processing 685/826 atomic regions from SNP 205420 to 206020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,489 DEBUG Processing 620/708 atomic regions from SNP 185833 to 186433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,514 DEBUG Processing 652/724 atomic regions from SNP 195409 to 196009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,558 DEBUG Processing 228/638 atomic regions from SNP 68283 to 68883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:35,577 DEBUG Processing 23/711 atomic regions from SNP 6620 to 7220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:35,602 DEBUG Processing 566/686 atomic regions from SNP 169670 to 170270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:35,637 DEBUG Processing 686/826 atomic regions from SNP 205720 to 206320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,718 DEBUG Processing 621/708 atomic regions from SNP 186133 to 186733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,740 DEBUG Processing 653/724 atomic regions from SNP 195709 to 196309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,768 DEBUG Processing 229/638 atomic regions from SNP 68583 to 69183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:35,802 DEBUG Processing 24/711 atomic regions from SNP 6920 to 7520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:35,837 DEBUG Processing 567/686 atomic regions from SNP 169970 to 170570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:35,912 DEBUG Processing 687/826 atomic regions from SNP 206020 to 206620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,948 DEBUG Processing 622/708 atomic regions from SNP 186433 to 187033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,970 DEBUG Processing 654/724 atomic regions from SNP 196009 to 196609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,983 DEBUG Processing 230/638 atomic regions from SNP 68883 to 69483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:36,030 DEBUG Processing 25/711 atomic regions from SNP 7220 to 7820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:36,075 DEBUG Processing 568/686 atomic regions from SNP 170270 to 170870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:36,182 DEBUG Processing 623/708 atomic regions from SNP 186733 to 187333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:36,197 DEBUG Processing 688/826 atomic regions from SNP 206320 to 206920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,203 DEBUG Processing 655/724 atomic regions from SNP 196309 to 196909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,205 DEBUG Processing 231/638 atomic regions from SNP 69183 to 69783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:36,257 DEBUG Processing 26/711 atomic regions from SNP 7520 to 8120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:36,311 DEBUG Processing 569/686 atomic regions from SNP 170570 to 171170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:36,423 DEBUG Processing 624/708 atomic regions from SNP 187033 to 187633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:36,430 DEBUG Processing 232/638 atomic regions from SNP 69483 to 70083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:36,441 DEBUG Processing 656/724 atomic regions from SNP 196609 to 197209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,485 DEBUG Processing 27/711 atomic regions from SNP 7820 to 8420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:36,485 DEBUG Processing 689/826 atomic regions from SNP 206620 to 207220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,552 DEBUG Processing 570/686 atomic regions from SNP 170870 to 171470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:36,657 DEBUG Processing 233/638 atomic regions from SNP 69783 to 70383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:36,663 DEBUG Processing 625/708 atomic regions from SNP 187333 to 187933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:36,684 DEBUG Processing 657/724 atomic regions from SNP 196909 to 197509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,721 DEBUG Processing 28/711 atomic regions from SNP 8120 to 8720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:36,768 DEBUG Processing 690/826 atomic regions from SNP 206920 to 207520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,802 DEBUG Processing 571/686 atomic regions from SNP 171170 to 171770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:36,889 DEBUG Processing 234/638 atomic regions from SNP 70083 to 70683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:36,895 DEBUG Processing 626/708 atomic regions from SNP 187633 to 188233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:36,922 DEBUG Processing 658/724 atomic regions from SNP 197209 to 197809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,982 DEBUG Processing 29/711 atomic regions from SNP 8420 to 9020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:37,043 DEBUG Processing 691/826 atomic regions from SNP 207220 to 207820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,065 DEBUG Processing 572/686 atomic regions from SNP 171470 to 172070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:37,115 DEBUG Processing 627/708 atomic regions from SNP 187933 to 188533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:37,122 DEBUG Processing 235/638 atomic regions from SNP 70383 to 70983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:37,147 DEBUG Processing 659/724 atomic regions from SNP 197509 to 198109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,244 DEBUG Processing 30/711 atomic regions from SNP 8720 to 9320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:37,353 DEBUG Processing 692/826 atomic regions from SNP 207520 to 208120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,385 DEBUG Processing 573/686 atomic regions from SNP 171770 to 172370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:37,397 DEBUG Processing 628/708 atomic regions from SNP 188233 to 188833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:37,405 DEBUG Processing 236/638 atomic regions from SNP 70683 to 71283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:37,416 DEBUG Processing 660/724 atomic regions from SNP 197809 to 198409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,469 DEBUG Processing 31/711 atomic regions from SNP 9020 to 9620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:37,605 DEBUG Processing 693/826 atomic regions from SNP 207820 to 208420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,641 DEBUG Processing 629/708 atomic regions from SNP 188533 to 189133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:37,642 DEBUG Processing 237/638 atomic regions from SNP 70983 to 71583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:37,663 DEBUG Processing 661/724 atomic regions from SNP 198109 to 198709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,669 DEBUG Processing 574/686 atomic regions from SNP 172070 to 172670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:37,706 DEBUG Processing 32/711 atomic regions from SNP 9320 to 9920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:37,856 DEBUG Processing 694/826 atomic regions from SNP 208120 to 208720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,870 DEBUG Processing 238/638 atomic regions from SNP 71283 to 71883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:37,874 DEBUG Processing 630/708 atomic regions from SNP 188833 to 189433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:37,900 DEBUG Processing 662/724 atomic regions from SNP 198409 to 199009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,942 DEBUG Processing 33/711 atomic regions from SNP 9620 to 10220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:37,949 DEBUG Processing 575/686 atomic regions from SNP 172370 to 172970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:38,095 DEBUG Processing 239/638 atomic regions from SNP 71583 to 72183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:38,104 DEBUG Processing 631/708 atomic regions from SNP 189133 to 189733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:38,111 DEBUG Processing 695/826 atomic regions from SNP 208420 to 209020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,133 DEBUG Processing 663/724 atomic regions from SNP 198709 to 199309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,171 DEBUG Processing 34/711 atomic regions from SNP 9920 to 10520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:38,222 DEBUG Processing 576/686 atomic regions from SNP 172670 to 173270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:38,364 DEBUG Processing 240/638 atomic regions from SNP 71883 to 72483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:38,380 DEBUG Processing 632/708 atomic regions from SNP 189433 to 190033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:38,398 DEBUG Processing 664/724 atomic regions from SNP 199009 to 199609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,407 DEBUG Processing 696/826 atomic regions from SNP 208720 to 209320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,424 DEBUG Processing 35/711 atomic regions from SNP 10220 to 10820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:38,538 DEBUG Processing 577/686 atomic regions from SNP 172970 to 173570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:38,701 DEBUG Processing 665/724 atomic regions from SNP 199309 to 199909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,718 DEBUG Processing 241/638 atomic regions from SNP 72183 to 72783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:38,724 DEBUG Processing 633/708 atomic regions from SNP 189733 to 190333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:38,743 DEBUG Processing 697/826 atomic regions from SNP 209020 to 209620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,746 DEBUG Processing 36/711 atomic regions from SNP 10520 to 11120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:38,883 DEBUG Processing 578/686 atomic regions from SNP 173270 to 173870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:39,044 DEBUG Processing 666/724 atomic regions from SNP 199609 to 200209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,076 DEBUG Processing 634/708 atomic regions from SNP 190033 to 190633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:39,084 DEBUG Processing 242/638 atomic regions from SNP 72483 to 73083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:39,094 DEBUG Processing 37/711 atomic regions from SNP 10820 to 11420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,109 DEBUG Processing 698/826 atomic regions from SNP 209320 to 209920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,226 DEBUG Processing 579/686 atomic regions from SNP 173570 to 174170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:39,281 DEBUG Processing 667/724 atomic regions from SNP 199909 to 200509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,327 DEBUG Processing 635/708 atomic regions from SNP 190333 to 190933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:39,335 DEBUG Processing 38/711 atomic regions from SNP 11120 to 11720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,345 DEBUG Processing 243/638 atomic regions from SNP 72783 to 73383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:39,375 DEBUG Processing 699/826 atomic regions from SNP 209620 to 210220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,517 DEBUG Processing 580/686 atomic regions from SNP 173870 to 174470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:39,537 DEBUG Processing 668/724 atomic regions from SNP 200209 to 200809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,578 DEBUG Processing 39/711 atomic regions from SNP 11420 to 12020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,584 DEBUG Processing 636/708 atomic regions from SNP 190633 to 191233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:39,594 DEBUG Processing 244/638 atomic regions from SNP 73083 to 73683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:39,659 DEBUG Processing 700/826 atomic regions from SNP 209920 to 210520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,829 DEBUG Processing 581/686 atomic regions from SNP 174170 to 174770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:39,831 DEBUG Processing 669/724 atomic regions from SNP 200509 to 201109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,857 DEBUG Processing 40/711 atomic regions from SNP 11720 to 12320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,862 DEBUG Processing 637/708 atomic regions from SNP 190933 to 191533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:39,866 DEBUG Processing 245/638 atomic regions from SNP 73383 to 73983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:39,950 DEBUG Processing 701/826 atomic regions from SNP 210220 to 210820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,144 DEBUG Processing 670/724 atomic regions from SNP 200809 to 201409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,160 DEBUG Processing 582/686 atomic regions from SNP 174470 to 175070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:40,178 DEBUG Processing 246/638 atomic regions from SNP 73683 to 74283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:40,184 DEBUG Processing 41/711 atomic regions from SNP 12020 to 12620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:40,187 DEBUG Processing 638/708 atomic regions from SNP 191233 to 191833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:40,247 DEBUG Processing 702/826 atomic regions from SNP 210520 to 211120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,438 DEBUG Processing 671/724 atomic regions from SNP 201109 to 201709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,493 DEBUG Processing 583/686 atomic regions from SNP 174770 to 175370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:40,516 DEBUG Processing 247/638 atomic regions from SNP 73983 to 74583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:40,526 DEBUG Processing 42/711 atomic regions from SNP 12320 to 12920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:40,536 DEBUG Processing 639/708 atomic regions from SNP 191533 to 192133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:40,623 DEBUG Processing 703/826 atomic regions from SNP 210820 to 211420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,668 DEBUG Processing 672/724 atomic regions from SNP 201409 to 202009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,725 DEBUG Processing 248/638 atomic regions from SNP 74283 to 74883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:40,727 DEBUG Processing 584/686 atomic regions from SNP 175070 to 175670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:40,754 DEBUG Processing 43/711 atomic regions from SNP 12620 to 13220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:40,769 DEBUG Processing 640/708 atomic regions from SNP 191833 to 192433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:40,890 DEBUG Processing 704/826 atomic regions from SNP 211120 to 211720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,907 DEBUG Processing 673/724 atomic regions from SNP 201709 to 202309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,946 DEBUG Processing 249/638 atomic regions from SNP 74583 to 75183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:40,967 DEBUG Processing 585/686 atomic regions from SNP 175370 to 175970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:40,982 DEBUG Processing 44/711 atomic regions from SNP 12920 to 13520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:40,999 DEBUG Processing 641/708 atomic regions from SNP 192133 to 192733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,134 DEBUG Processing 705/826 atomic regions from SNP 211420 to 212020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,140 DEBUG Processing 674/724 atomic regions from SNP 202009 to 202609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,170 DEBUG Processing 250/638 atomic regions from SNP 74883 to 75483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:41,219 DEBUG Processing 45/711 atomic regions from SNP 13220 to 13820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:41,223 DEBUG Processing 586/686 atomic regions from SNP 175670 to 176270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:41,234 DEBUG Processing 642/708 atomic regions from SNP 192433 to 193033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,361 DEBUG Processing 675/724 atomic regions from SNP 202309 to 202909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,376 DEBUG Processing 706/826 atomic regions from SNP 211720 to 212320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,401 DEBUG Processing 251/638 atomic regions from SNP 75183 to 75783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:41,455 DEBUG Processing 46/711 atomic regions from SNP 13520 to 14120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:41,470 DEBUG Processing 587/686 atomic regions from SNP 175970 to 176570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:41,473 DEBUG Processing 643/708 atomic regions from SNP 192733 to 193333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,577 DEBUG Processing 676/724 atomic regions from SNP 202609 to 203209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,617 DEBUG Processing 707/826 atomic regions from SNP 212020 to 212620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,644 DEBUG Processing 252/638 atomic regions from SNP 75483 to 76083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:41,684 DEBUG Processing 47/711 atomic regions from SNP 13820 to 14420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:41,707 DEBUG Processing 644/708 atomic regions from SNP 193033 to 193633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,714 DEBUG Processing 588/686 atomic regions from SNP 176270 to 176870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:41,807 DEBUG Processing 677/724 atomic regions from SNP 202909 to 203509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,859 DEBUG Processing 708/826 atomic regions from SNP 212320 to 212920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,893 DEBUG Processing 253/638 atomic regions from SNP 75783 to 76383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:41,911 DEBUG Processing 48/711 atomic regions from SNP 14120 to 14720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:41,939 DEBUG Processing 645/708 atomic regions from SNP 193333 to 193933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,956 DEBUG Processing 589/686 atomic regions from SNP 176570 to 177170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,039 DEBUG Processing 678/724 atomic regions from SNP 203209 to 203809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,127 DEBUG Processing 709/826 atomic regions from SNP 212620 to 213220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,157 DEBUG Processing 254/638 atomic regions from SNP 76083 to 76683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:42,169 DEBUG Processing 49/711 atomic regions from SNP 14420 to 15020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:42,204 DEBUG Processing 646/708 atomic regions from SNP 193633 to 194233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:42,250 DEBUG Processing 590/686 atomic regions from SNP 176870 to 177470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,294 DEBUG Processing 679/724 atomic regions from SNP 203509 to 204109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,389 DEBUG Processing 710/826 atomic regions from SNP 212920 to 213520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,394 DEBUG Processing 50/711 atomic regions from SNP 14720 to 15320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:42,402 DEBUG Processing 255/638 atomic regions from SNP 76383 to 76983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:42,429 DEBUG Processing 647/708 atomic regions from SNP 193933 to 194533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:42,491 DEBUG Processing 591/686 atomic regions from SNP 177170 to 177770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,535 DEBUG Processing 680/724 atomic regions from SNP 203809 to 204409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,625 DEBUG Processing 51/711 atomic regions from SNP 15020 to 15620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:42,647 DEBUG Processing 711/826 atomic regions from SNP 213220 to 213820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,651 DEBUG Processing 256/638 atomic regions from SNP 76683 to 77283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:42,661 DEBUG Processing 648/708 atomic regions from SNP 194233 to 194833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:42,732 DEBUG Processing 592/686 atomic regions from SNP 177470 to 178070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,765 DEBUG Processing 681/724 atomic regions from SNP 204109 to 204709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,849 DEBUG Processing 52/711 atomic regions from SNP 15320 to 15920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:42,875 DEBUG Processing 257/638 atomic regions from SNP 76983 to 77583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:42,898 DEBUG Processing 712/826 atomic regions from SNP 213520 to 214120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,914 DEBUG Processing 649/708 atomic regions from SNP 194533 to 195133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:42,972 DEBUG Processing 593/686 atomic regions from SNP 177770 to 178370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,998 DEBUG Processing 682/724 atomic regions from SNP 204409 to 205009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,069 DEBUG Processing 53/711 atomic regions from SNP 15620 to 16220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:43,124 DEBUG Processing 258/638 atomic regions from SNP 77283 to 77883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:43,153 DEBUG Processing 713/826 atomic regions from SNP 213820 to 214420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,171 DEBUG Processing 650/708 atomic regions from SNP 194833 to 195433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:43,217 DEBUG Processing 594/686 atomic regions from SNP 178070 to 178670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,235 DEBUG Processing 683/724 atomic regions from SNP 204709 to 205309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,294 DEBUG Processing 54/711 atomic regions from SNP 15920 to 16520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:43,381 DEBUG Processing 259/638 atomic regions from SNP 77583 to 78183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:43,408 DEBUG Processing 714/826 atomic regions from SNP 214120 to 214720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,418 DEBUG Processing 651/708 atomic regions from SNP 195133 to 195733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:43,465 DEBUG Processing 595/686 atomic regions from SNP 178370 to 178970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,471 DEBUG Processing 684/724 atomic regions from SNP 205009 to 205609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,523 DEBUG Processing 55/711 atomic regions from SNP 16220 to 16820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:43,609 DEBUG Processing 260/638 atomic regions from SNP 77883 to 78483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:43,657 DEBUG Processing 715/826 atomic regions from SNP 214420 to 215020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,667 DEBUG Processing 652/708 atomic regions from SNP 195433 to 196033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:43,706 DEBUG Processing 685/724 atomic regions from SNP 205309 to 205909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,708 DEBUG Processing 596/686 atomic regions from SNP 178670 to 179270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,754 DEBUG Processing 56/711 atomic regions from SNP 16520 to 17120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:43,820 DEBUG Processing 261/638 atomic regions from SNP 78183 to 78783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:43,897 DEBUG Processing 716/826 atomic regions from SNP 214720 to 215320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,915 DEBUG Processing 653/708 atomic regions from SNP 195733 to 196333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:43,943 DEBUG Processing 686/724 atomic regions from SNP 205609 to 206209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,950 DEBUG Processing 597/686 atomic regions from SNP 178970 to 179570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,986 DEBUG Processing 57/711 atomic regions from SNP 16820 to 17420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:44,037 DEBUG Processing 262/638 atomic regions from SNP 78483 to 79083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:44,133 DEBUG Processing 717/826 atomic regions from SNP 215020 to 215620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,174 DEBUG Processing 687/724 atomic regions from SNP 205909 to 206509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,178 DEBUG Processing 654/708 atomic regions from SNP 196033 to 196633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:44,193 DEBUG Processing 598/686 atomic regions from SNP 179270 to 179870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,222 DEBUG Processing 58/711 atomic regions from SNP 17120 to 17720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:44,262 DEBUG Processing 263/638 atomic regions from SNP 78783 to 79383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:44,372 DEBUG Processing 718/826 atomic regions from SNP 215320 to 215920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,404 DEBUG Processing 688/724 atomic regions from SNP 206209 to 206809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,433 DEBUG Processing 599/686 atomic regions from SNP 179570 to 180170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,448 DEBUG Processing 655/708 atomic regions from SNP 196333 to 196933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:44,455 DEBUG Processing 59/711 atomic regions from SNP 17420 to 18020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:44,501 DEBUG Processing 264/638 atomic regions from SNP 79083 to 79683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:44,617 DEBUG Processing 719/826 atomic regions from SNP 215620 to 216220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,630 DEBUG Processing 689/724 atomic regions from SNP 206509 to 207109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,668 DEBUG Processing 600/686 atomic regions from SNP 179870 to 180470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,683 DEBUG Processing 60/711 atomic regions from SNP 17720 to 18320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:44,720 DEBUG Processing 656/708 atomic regions from SNP 196633 to 197233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:44,737 DEBUG Processing 265/638 atomic regions from SNP 79383 to 79983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:44,853 DEBUG Processing 690/724 atomic regions from SNP 206809 to 207409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,859 DEBUG Processing 720/826 atomic regions from SNP 215920 to 216520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,917 DEBUG Processing 601/686 atomic regions from SNP 180170 to 180770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,918 DEBUG Processing 61/711 atomic regions from SNP 18020 to 18620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:44,961 DEBUG Processing 266/638 atomic regions from SNP 79683 to 80283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:44,991 DEBUG Processing 657/708 atomic regions from SNP 196933 to 197533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,086 DEBUG Processing 691/724 atomic regions from SNP 207109 to 207709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,108 DEBUG Processing 721/826 atomic regions from SNP 216220 to 216820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,146 DEBUG Processing 62/711 atomic regions from SNP 18320 to 18920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:45,157 DEBUG Processing 602/686 atomic regions from SNP 180470 to 181070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,197 DEBUG Processing 267/638 atomic regions from SNP 79983 to 80583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:45,244 DEBUG Processing 658/708 atomic regions from SNP 197233 to 197833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,318 DEBUG Processing 692/724 atomic regions from SNP 207409 to 208009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,353 DEBUG Processing 722/826 atomic regions from SNP 216520 to 217120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,367 DEBUG Processing 63/711 atomic regions from SNP 18620 to 19220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:45,388 DEBUG Processing 603/686 atomic regions from SNP 180770 to 181370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,420 DEBUG Processing 268/638 atomic regions from SNP 80283 to 80883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:45,479 DEBUG Processing 659/708 atomic regions from SNP 197533 to 198133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,550 DEBUG Processing 693/724 atomic regions from SNP 207709 to 208309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,591 DEBUG Processing 64/711 atomic regions from SNP 18920 to 19520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:45,604 DEBUG Processing 723/826 atomic regions from SNP 216820 to 217420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,619 DEBUG Processing 604/686 atomic regions from SNP 181070 to 181670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,644 DEBUG Processing 269/638 atomic regions from SNP 80583 to 81183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:45,712 DEBUG Processing 660/708 atomic regions from SNP 197833 to 198433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,789 DEBUG Processing 694/724 atomic regions from SNP 208009 to 208609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,823 DEBUG Processing 65/711 atomic regions from SNP 19220 to 19820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:45,861 DEBUG Processing 724/826 atomic regions from SNP 217120 to 217720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,861 DEBUG Processing 605/686 atomic regions from SNP 181370 to 181970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,870 DEBUG Processing 270/638 atomic regions from SNP 80883 to 81483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:45,937 DEBUG Processing 661/708 atomic regions from SNP 198133 to 198733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,040 DEBUG Processing 695/724 atomic regions from SNP 208309 to 208909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,096 DEBUG Processing 66/711 atomic regions from SNP 19520 to 20120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:46,130 DEBUG Processing 271/638 atomic regions from SNP 81183 to 81783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:46,137 DEBUG Processing 606/686 atomic regions from SNP 181670 to 182270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,156 DEBUG Processing 725/826 atomic regions from SNP 217420 to 218020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,188 DEBUG Processing 662/708 atomic regions from SNP 198433 to 199033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,265 DEBUG Processing 696/724 atomic regions from SNP 208609 to 209209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,317 DEBUG Processing 67/711 atomic regions from SNP 19820 to 20420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:46,365 DEBUG Processing 272/638 atomic regions from SNP 81483 to 82083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:46,368 DEBUG Processing 607/686 atomic regions from SNP 181970 to 182570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,412 DEBUG Processing 726/826 atomic regions from SNP 217720 to 218320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,452 DEBUG Processing 663/708 atomic regions from SNP 198733 to 199333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,496 DEBUG Processing 697/724 atomic regions from SNP 208909 to 209509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,541 DEBUG Processing 68/711 atomic regions from SNP 20120 to 20720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:46,597 DEBUG Processing 273/638 atomic regions from SNP 81783 to 82383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:46,598 DEBUG Processing 608/686 atomic regions from SNP 182270 to 182870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,660 DEBUG Processing 727/826 atomic regions from SNP 218020 to 218620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,703 DEBUG Processing 664/708 atomic regions from SNP 199033 to 199633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,728 DEBUG Processing 698/724 atomic regions from SNP 209209 to 209809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,769 DEBUG Processing 69/711 atomic regions from SNP 20420 to 21020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:46,820 DEBUG Processing 274/638 atomic regions from SNP 82083 to 82683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:46,831 DEBUG Processing 609/686 atomic regions from SNP 182570 to 183170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,907 DEBUG Processing 728/826 atomic regions from SNP 218320 to 218920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,955 DEBUG Processing 699/724 atomic regions from SNP 209509 to 210109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,962 DEBUG Processing 665/708 atomic regions from SNP 199333 to 199933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,995 DEBUG Processing 70/711 atomic regions from SNP 20720 to 21320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,040 DEBUG Processing 275/638 atomic regions from SNP 82383 to 82983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:47,071 DEBUG Processing 610/686 atomic regions from SNP 182870 to 183470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,160 DEBUG Processing 729/826 atomic regions from SNP 218620 to 219220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,181 DEBUG Processing 700/724 atomic regions from SNP 209809 to 210409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,209 DEBUG Processing 666/708 atomic regions from SNP 199633 to 200233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,219 DEBUG Processing 71/711 atomic regions from SNP 21020 to 21620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,251 DEBUG Processing 276/638 atomic regions from SNP 82683 to 83283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:47,311 DEBUG Processing 611/686 atomic regions from SNP 183170 to 183770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,420 DEBUG Processing 730/826 atomic regions from SNP 218920 to 219520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,423 DEBUG Processing 701/724 atomic regions from SNP 210109 to 210709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,455 DEBUG Processing 72/711 atomic regions from SNP 21320 to 21920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,477 DEBUG Processing 277/638 atomic regions from SNP 82983 to 83583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:47,478 DEBUG Processing 667/708 atomic regions from SNP 199933 to 200533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,552 DEBUG Processing 612/686 atomic regions from SNP 183470 to 184070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,661 DEBUG Processing 702/724 atomic regions from SNP 210409 to 211009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,688 DEBUG Processing 731/826 atomic regions from SNP 219220 to 219820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,692 DEBUG Processing 73/711 atomic regions from SNP 21620 to 22220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,717 DEBUG Processing 278/638 atomic regions from SNP 83283 to 83883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:47,755 DEBUG Processing 668/708 atomic regions from SNP 200233 to 200833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,801 DEBUG Processing 613/686 atomic regions from SNP 183770 to 184370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,895 DEBUG Processing 703/724 atomic regions from SNP 210709 to 211309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,924 DEBUG Processing 74/711 atomic regions from SNP 21920 to 22520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,950 DEBUG Processing 279/638 atomic regions from SNP 83583 to 84183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:47,952 DEBUG Processing 732/826 atomic regions from SNP 219520 to 220120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,031 DEBUG Processing 669/708 atomic regions from SNP 200533 to 201133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,047 DEBUG Processing 614/686 atomic regions from SNP 184070 to 184670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,134 DEBUG Processing 704/724 atomic regions from SNP 211009 to 211609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,157 DEBUG Processing 75/711 atomic regions from SNP 22220 to 22820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:48,187 DEBUG Processing 280/638 atomic regions from SNP 83883 to 84483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:48,218 DEBUG Processing 733/826 atomic regions from SNP 219820 to 220420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,288 DEBUG Processing 615/686 atomic regions from SNP 184370 to 184970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,303 DEBUG Processing 670/708 atomic regions from SNP 200833 to 201433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,393 DEBUG Processing 76/711 atomic regions from SNP 22520 to 23120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:48,395 DEBUG Processing 705/724 atomic regions from SNP 211309 to 211909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,421 DEBUG Processing 281/638 atomic regions from SNP 84183 to 84783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:48,487 DEBUG Processing 734/826 atomic regions from SNP 220120 to 220720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,539 DEBUG Processing 616/686 atomic regions from SNP 184670 to 185270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,564 DEBUG Processing 671/708 atomic regions from SNP 201133 to 201733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,630 DEBUG Processing 77/711 atomic regions from SNP 22820 to 23420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:48,642 DEBUG Processing 282/638 atomic regions from SNP 84483 to 85083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:48,666 DEBUG Processing 706/724 atomic regions from SNP 211609 to 212209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,757 DEBUG Processing 735/826 atomic regions from SNP 220420 to 221020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,793 DEBUG Processing 617/686 atomic regions from SNP 184970 to 185570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,826 DEBUG Processing 672/708 atomic regions from SNP 201433 to 202033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,859 DEBUG Processing 283/638 atomic regions from SNP 84783 to 85383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:48,863 DEBUG Processing 78/711 atomic regions from SNP 23120 to 23720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:48,945 DEBUG Processing 707/724 atomic regions from SNP 211909 to 212509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,006 DEBUG Processing 736/826 atomic regions from SNP 220720 to 221320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,033 DEBUG Processing 618/686 atomic regions from SNP 185270 to 185870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,076 DEBUG Processing 284/638 atomic regions from SNP 85083 to 85683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:49,093 DEBUG Processing 79/711 atomic regions from SNP 23420 to 24020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:49,098 DEBUG Processing 673/708 atomic regions from SNP 201733 to 202333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,202 DEBUG Processing 708/724 atomic regions from SNP 212209 to 212809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,258 DEBUG Processing 737/826 atomic regions from SNP 221020 to 221620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,280 DEBUG Processing 619/686 atomic regions from SNP 185570 to 186170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,297 DEBUG Processing 285/638 atomic regions from SNP 85383 to 85983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:49,326 DEBUG Processing 80/711 atomic regions from SNP 23720 to 24320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:49,371 DEBUG Processing 674/708 atomic regions from SNP 202033 to 202633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,457 DEBUG Processing 709/724 atomic regions from SNP 212509 to 213109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,507 DEBUG Processing 738/826 atomic regions from SNP 221320 to 221920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,521 DEBUG Processing 286/638 atomic regions from SNP 85683 to 86283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:49,528 DEBUG Processing 620/686 atomic regions from SNP 185870 to 186470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,560 DEBUG Processing 81/711 atomic regions from SNP 24020 to 24620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:49,636 DEBUG Processing 675/708 atomic regions from SNP 202333 to 202933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,697 DEBUG Processing 710/724 atomic regions from SNP 212809 to 213409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,748 DEBUG Processing 287/638 atomic regions from SNP 85983 to 86583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:49,759 DEBUG Processing 739/826 atomic regions from SNP 221620 to 222220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,777 DEBUG Processing 621/686 atomic regions from SNP 186170 to 186770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,799 DEBUG Processing 82/711 atomic regions from SNP 24320 to 24920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:49,895 DEBUG Processing 676/708 atomic regions from SNP 202633 to 203233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,926 DEBUG Processing 711/724 atomic regions from SNP 213109 to 213709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,966 DEBUG Processing 288/638 atomic regions from SNP 86283 to 86883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:50,006 DEBUG Processing 740/826 atomic regions from SNP 221920 to 222520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,024 DEBUG Processing 622/686 atomic regions from SNP 186470 to 187070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,038 DEBUG Processing 83/711 atomic regions from SNP 24620 to 25220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:50,157 DEBUG Processing 677/708 atomic regions from SNP 202933 to 203533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,181 DEBUG Processing 289/638 atomic regions from SNP 86583 to 87183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:50,189 DEBUG Processing 712/724 atomic regions from SNP 213409 to 214009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,265 DEBUG Processing 623/686 atomic regions from SNP 186770 to 187370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,268 DEBUG Processing 84/711 atomic regions from SNP 24920 to 25520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:50,274 DEBUG Processing 741/826 atomic regions from SNP 222220 to 222820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,396 DEBUG Processing 290/638 atomic regions from SNP 86883 to 87483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:50,411 DEBUG Processing 678/708 atomic regions from SNP 203233 to 203833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,442 DEBUG Processing 713/724 atomic regions from SNP 213709 to 214309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,502 DEBUG Processing 85/711 atomic regions from SNP 25220 to 25820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:50,514 DEBUG Processing 624/686 atomic regions from SNP 187070 to 187670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,529 DEBUG Processing 742/826 atomic regions from SNP 222520 to 223120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,610 DEBUG Processing 291/638 atomic regions from SNP 87183 to 87783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:50,654 DEBUG Processing 679/708 atomic regions from SNP 203533 to 204133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,712 DEBUG Processing 714/724 atomic regions from SNP 214009 to 214609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,749 DEBUG Processing 86/711 atomic regions from SNP 25520 to 26120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:50,768 DEBUG Processing 625/686 atomic regions from SNP 187370 to 187970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,786 DEBUG Processing 743/826 atomic regions from SNP 222820 to 223420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,825 DEBUG Processing 292/638 atomic regions from SNP 87483 to 88083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:50,888 DEBUG Processing 680/708 atomic regions from SNP 203833 to 204433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,983 DEBUG Processing 715/724 atomic regions from SNP 214309 to 214909 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,993 DEBUG Processing 87/711 atomic regions from SNP 25820 to 26420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,022 DEBUG Processing 626/686 atomic regions from SNP 187670 to 188270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,041 DEBUG Processing 744/826 atomic regions from SNP 223120 to 223720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,050 DEBUG Processing 293/638 atomic regions from SNP 87783 to 88383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:51,112 DEBUG Processing 681/708 atomic regions from SNP 204133 to 204733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,221 DEBUG Processing 88/711 atomic regions from SNP 26120 to 26720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,245 DEBUG Processing 716/724 atomic regions from SNP 214609 to 215209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,272 DEBUG Processing 627/686 atomic regions from SNP 187970 to 188570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,285 DEBUG Processing 294/638 atomic regions from SNP 88083 to 88683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:51,297 DEBUG Processing 745/826 atomic regions from SNP 223420 to 224020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,349 DEBUG Processing 682/708 atomic regions from SNP 204433 to 205033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,443 DEBUG Processing 89/711 atomic regions from SNP 26420 to 27020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,489 DEBUG Processing 717/724 atomic regions from SNP 214909 to 215509 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,507 DEBUG Processing 295/638 atomic regions from SNP 88383 to 88983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:51,518 DEBUG Processing 628/686 atomic regions from SNP 188270 to 188870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,547 DEBUG Processing 746/826 atomic regions from SNP 223720 to 224320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,607 DEBUG Processing 683/708 atomic regions from SNP 204733 to 205333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,675 DEBUG Processing 90/711 atomic regions from SNP 26720 to 27320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,725 DEBUG Processing 296/638 atomic regions from SNP 88683 to 89283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:51,729 DEBUG Processing 718/724 atomic regions from SNP 215209 to 215809 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,768 DEBUG Processing 629/686 atomic regions from SNP 188570 to 189170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,798 DEBUG Processing 747/826 atomic regions from SNP 224020 to 224620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,844 DEBUG Processing 684/708 atomic regions from SNP 205033 to 205633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,908 DEBUG Processing 91/711 atomic regions from SNP 27020 to 27620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,944 DEBUG Processing 297/638 atomic regions from SNP 88983 to 89583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:51,968 DEBUG Processing 719/724 atomic regions from SNP 215509 to 216109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,013 DEBUG Processing 630/686 atomic regions from SNP 188870 to 189470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,050 DEBUG Processing 748/826 atomic regions from SNP 224320 to 224920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,073 DEBUG Processing 685/708 atomic regions from SNP 205333 to 205933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,132 DEBUG Processing 92/711 atomic regions from SNP 27320 to 27920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:52,165 DEBUG Processing 298/638 atomic regions from SNP 89283 to 89883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:52,204 DEBUG Processing 720/724 atomic regions from SNP 215809 to 216409 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,264 DEBUG Processing 631/686 atomic regions from SNP 189170 to 189770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,306 DEBUG Processing 749/826 atomic regions from SNP 224620 to 225220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,311 DEBUG Processing 686/708 atomic regions from SNP 205633 to 206233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,359 DEBUG Processing 93/711 atomic regions from SNP 27620 to 28220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:52,378 DEBUG Processing 299/638 atomic regions from SNP 89583 to 90183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:52,429 DEBUG Processing 721/724 atomic regions from SNP 216109 to 216709 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,510 DEBUG Processing 632/686 atomic regions from SNP 189470 to 190070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,555 DEBUG Processing 687/708 atomic regions from SNP 205933 to 206533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,559 DEBUG Processing 750/826 atomic regions from SNP 224920 to 225520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,594 DEBUG Processing 94/711 atomic regions from SNP 27920 to 28520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:52,599 DEBUG Processing 300/638 atomic regions from SNP 89883 to 90483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:52,657 DEBUG Processing 722/724 atomic regions from SNP 216409 to 217009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,751 DEBUG Processing 633/686 atomic regions from SNP 189770 to 190370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,798 DEBUG Processing 688/708 atomic regions from SNP 206233 to 206833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,807 DEBUG Processing 751/826 atomic regions from SNP 225220 to 225820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,827 DEBUG Processing 301/638 atomic regions from SNP 90183 to 90783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:52,836 DEBUG Processing 95/711 atomic regions from SNP 28220 to 28820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:52,901 DEBUG Processing 723/724 atomic regions from SNP 216709 to 217309 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,996 DEBUG Processing 634/686 atomic regions from SNP 190070 to 190670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,035 DEBUG Processing 689/708 atomic regions from SNP 206533 to 207133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,050 DEBUG Processing 752/826 atomic regions from SNP 225520 to 226120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,063 DEBUG Processing 302/638 atomic regions from SNP 90483 to 91083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:53,085 DEBUG Processing 96/711 atomic regions from SNP 28520 to 29120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:53,143 DEBUG Processing 724/724 atomic regions from SNP 217009 to 217609 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,242 DEBUG Processing 635/686 atomic regions from SNP 190370 to 190970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,271 DEBUG Processing 690/708 atomic regions from SNP 206833 to 207433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,284 DEBUG Unique SNPs positions in subchromosome 1: 217610 2025-01-31 09:48:53,286 DEBUG Processing 303/638 atomic regions from SNP 90783 to 91383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:53,294 DEBUG Processing 753/826 atomic regions from SNP 225820 to 226420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,351 DEBUG Processing 97/711 atomic regions from SNP 28820 to 29420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:53,490 DEBUG Processing 636/686 atomic regions from SNP 190670 to 191270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,511 DEBUG Processing 304/638 atomic regions from SNP 91083 to 91683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:53,511 DEBUG Processing 691/708 atomic regions from SNP 207133 to 207733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,542 DEBUG Processing 754/826 atomic regions from SNP 226120 to 226720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,619 DEBUG Processing 98/711 atomic regions from SNP 29120 to 29720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:53,733 DEBUG Processing 305/638 atomic regions from SNP 91383 to 91983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:53,734 DEBUG Processing 637/686 atomic regions from SNP 190970 to 191570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,748 DEBUG Processing 692/708 atomic regions from SNP 207433 to 208033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,786 DEBUG Processing 755/826 atomic regions from SNP 226420 to 227020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,886 DEBUG Processing 99/711 atomic regions from SNP 29420 to 30020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:53,946 DEBUG Processing 306/638 atomic regions from SNP 91683 to 92283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:53,971 DEBUG Processing 638/686 atomic regions from SNP 191270 to 191870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,979 DEBUG Processing 693/708 atomic regions from SNP 207733 to 208333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,025 DEBUG Processing 756/826 atomic regions from SNP 226720 to 227320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,150 DEBUG Processing 100/711 atomic regions from SNP 29720 to 30320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,165 DEBUG Processing 307/638 atomic regions from SNP 91983 to 92583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:54,209 DEBUG Processing 639/686 atomic regions from SNP 191570 to 192170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,237 DEBUG Processing 694/708 atomic regions from SNP 208033 to 208633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,264 DEBUG Processing 757/826 atomic regions from SNP 227020 to 227620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,389 DEBUG Processing 308/638 atomic regions from SNP 92283 to 92883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:54,410 DEBUG Processing 101/711 atomic regions from SNP 30020 to 30620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,453 DEBUG Processing 640/686 atomic regions from SNP 191870 to 192470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,471 DEBUG Processing 695/708 atomic regions from SNP 208333 to 208933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,502 DEBUG Processing 758/826 atomic regions from SNP 227320 to 227920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,532 DEBUG Subchromosome time: 198.78965653851628, subchromosome SNPs: 217610 2025-01-31 09:48:54,532 DEBUG Estimated BADs: [1.10, 0.55, 2.20, 1.10, 0.55, 2.20, 0.18, 1.10, 2.20, 11.01, 1.10, 0.55, 1.10, 5.50, 1.10] SNP counts: [29012, 33704, 6239, 7421, 18687, 8030, 1503, 18037, 7017, 3852, 34988, 26464, 16258, 3496, 2902] SNP IDs counts: [29012, 33704, 6239, 7421, 18687, 8030, 1503, 18037, 7017, 3852, 34988, 26464, 16258, 3496, 2902] Critical gap: 627754bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 20.12Mbp, 40.12Mbp, 43.47Mbp, 47.83Mbp, 59.84Mbp, 64.15Mbp, 65.34Mbp, 75.69Mbp, 79.64Mbp, 81.65Mbp, 101.81Mbp, 117.68Mbp, 126.90Mbp, 128.74Mbp, 130.69Mbp] 2025-01-31 09:48:54,532 DEBUG chr10 time: 198.7901449277997 s 2025-01-31 09:48:54,606 DEBUG Processing 309/638 atomic regions from SNP 92583 to 93183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:54,662 DEBUG Processing 102/711 atomic regions from SNP 30320 to 30920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,684 DEBUG chr10: Fitting background model for 15 segments 2025-01-31 09:48:54,702 DEBUG Processing 641/686 atomic regions from SNP 192170 to 192770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,720 DEBUG Processing 696/708 atomic regions from SNP 208633 to 209233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,750 DEBUG Processing 759/826 atomic regions from SNP 227620 to 228220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,830 DEBUG Processing 310/638 atomic regions from SNP 92883 to 93483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:54,920 DEBUG Processing 103/711 atomic regions from SNP 30620 to 31220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,947 DEBUG Processing 642/686 atomic regions from SNP 192470 to 193070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,955 DEBUG Processing 697/708 atomic regions from SNP 208933 to 209533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,996 DEBUG Processing 760/826 atomic regions from SNP 227920 to 228520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,057 DEBUG Processing 311/638 atomic regions from SNP 93183 to 93783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:55,187 DEBUG Processing 104/711 atomic regions from SNP 30920 to 31520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:55,188 DEBUG Processing 643/686 atomic regions from SNP 192770 to 193370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,189 DEBUG Processing 698/708 atomic regions from SNP 209233 to 209833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,243 DEBUG Processing 761/826 atomic regions from SNP 228220 to 228820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,280 DEBUG Processing 312/638 atomic regions from SNP 93483 to 94083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:55,423 DEBUG Processing 699/708 atomic regions from SNP 209533 to 210133 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,428 DEBUG Processing 644/686 atomic regions from SNP 193070 to 193670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,440 DEBUG Processing 105/711 atomic regions from SNP 31220 to 31820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:55,483 DEBUG Processing 762/826 atomic regions from SNP 228520 to 229120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,496 DEBUG Processing 313/638 atomic regions from SNP 93783 to 94383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:55,663 DEBUG Processing 700/708 atomic regions from SNP 209833 to 210433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,675 DEBUG Processing 645/686 atomic regions from SNP 193370 to 193970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,678 DEBUG Processing 106/711 atomic regions from SNP 31520 to 32120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:55,723 DEBUG Processing 314/638 atomic regions from SNP 94083 to 94683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:55,739 DEBUG Processing 763/826 atomic regions from SNP 228820 to 229420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,898 DEBUG Processing 701/708 atomic regions from SNP 210133 to 210733 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,915 DEBUG Processing 107/711 atomic regions from SNP 31820 to 32420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:55,923 DEBUG Processing 646/686 atomic regions from SNP 193670 to 194270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,938 DEBUG Processing 315/638 atomic regions from SNP 94383 to 94983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:55,984 DEBUG Processing 764/826 atomic regions from SNP 229120 to 229720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,128 DEBUG Processing 702/708 atomic regions from SNP 210433 to 211033 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,147 DEBUG Processing 108/711 atomic regions from SNP 32120 to 32720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:56,151 DEBUG Processing 316/638 atomic regions from SNP 94683 to 95283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:56,167 DEBUG Processing 647/686 atomic regions from SNP 193970 to 194570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,229 DEBUG Processing 765/826 atomic regions from SNP 229420 to 230020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,363 DEBUG Processing 703/708 atomic regions from SNP 210733 to 211333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,375 DEBUG Processing 317/638 atomic regions from SNP 94983 to 95583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:56,378 DEBUG Processing 109/711 atomic regions from SNP 32420 to 33020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:56,407 DEBUG Processing 648/686 atomic regions from SNP 194270 to 194870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,474 DEBUG Processing 766/826 atomic regions from SNP 229720 to 230320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,605 DEBUG Processing 704/708 atomic regions from SNP 211033 to 211633 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,620 DEBUG Processing 318/638 atomic regions from SNP 95283 to 95883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:56,620 DEBUG Processing 110/711 atomic regions from SNP 32720 to 33320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:56,658 DEBUG Processing 649/686 atomic regions from SNP 194570 to 195170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,721 DEBUG Processing 767/826 atomic regions from SNP 230020 to 230620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,846 DEBUG Processing 705/708 atomic regions from SNP 211333 to 211933 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,856 DEBUG Processing 111/711 atomic regions from SNP 33020 to 33620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:56,865 DEBUG Processing 319/638 atomic regions from SNP 95583 to 96183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:56,910 DEBUG Processing 650/686 atomic regions from SNP 194870 to 195470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,969 DEBUG Processing 768/826 atomic regions from SNP 230320 to 230920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,078 DEBUG Processing 706/708 atomic regions from SNP 211633 to 212233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,079 DEBUG Processing 320/638 atomic regions from SNP 95883 to 96483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:57,092 DEBUG Processing 112/711 atomic regions from SNP 33320 to 33920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:57,156 DEBUG Processing 651/686 atomic regions from SNP 195170 to 195770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,214 DEBUG Processing 769/826 atomic regions from SNP 230620 to 231220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,291 DEBUG Processing 321/638 atomic regions from SNP 96183 to 96783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:57,315 DEBUG Processing 707/708 atomic regions from SNP 211933 to 212533 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,324 DEBUG Processing 113/711 atomic regions from SNP 33620 to 34220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:57,404 DEBUG Processing 652/686 atomic regions from SNP 195470 to 196070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,459 DEBUG Processing 770/826 atomic regions from SNP 230920 to 231520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,509 DEBUG Processing 322/638 atomic regions from SNP 96483 to 97083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:57,552 DEBUG Processing 708/708 atomic regions from SNP 212233 to 212833 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,555 DEBUG Processing 114/711 atomic regions from SNP 33920 to 34520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:57,649 DEBUG Processing 653/686 atomic regions from SNP 195770 to 196370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,704 DEBUG Unique SNPs positions in subchromosome 1: 212834 2025-01-31 09:48:57,710 DEBUG Processing 771/826 atomic regions from SNP 231220 to 231820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,734 DEBUG Processing 323/638 atomic regions from SNP 96783 to 97383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:57,798 DEBUG Processing 115/711 atomic regions from SNP 34220 to 34820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:57,941 DEBUG Processing 654/686 atomic regions from SNP 196070 to 196670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,977 DEBUG Processing 772/826 atomic regions from SNP 231520 to 232120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,979 DEBUG Processing 324/638 atomic regions from SNP 97083 to 97683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:58,032 DEBUG Processing 116/711 atomic regions from SNP 34520 to 35120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,191 DEBUG Processing 655/686 atomic regions from SNP 196370 to 196970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,206 DEBUG Processing 325/638 atomic regions from SNP 97383 to 97983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:58,224 DEBUG Processing 773/826 atomic regions from SNP 231820 to 232420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,259 DEBUG Processing 117/711 atomic regions from SNP 34820 to 35420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,431 DEBUG Processing 326/638 atomic regions from SNP 97683 to 98283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:58,464 DEBUG Processing 656/686 atomic regions from SNP 196670 to 197270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,478 DEBUG Processing 774/826 atomic regions from SNP 232120 to 232720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,494 DEBUG Processing 118/711 atomic regions from SNP 35120 to 35720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,656 DEBUG Processing 327/638 atomic regions from SNP 97983 to 98583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:58,724 DEBUG Processing 657/686 atomic regions from SNP 196970 to 197570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,734 DEBUG Processing 775/826 atomic regions from SNP 232420 to 233020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,739 DEBUG Processing 119/711 atomic regions from SNP 35420 to 36020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,865 DEBUG Processing 328/638 atomic regions from SNP 98283 to 98883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:58,981 DEBUG Processing 658/686 atomic regions from SNP 197270 to 197870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,983 DEBUG Processing 120/711 atomic regions from SNP 35720 to 36320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,984 DEBUG Processing 776/826 atomic regions from SNP 232720 to 233320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,077 DEBUG Processing 329/638 atomic regions from SNP 98583 to 99183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:59,228 DEBUG Processing 121/711 atomic regions from SNP 36020 to 36620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:59,232 DEBUG Processing 777/826 atomic regions from SNP 233020 to 233620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,237 DEBUG Processing 659/686 atomic regions from SNP 197570 to 198170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,298 DEBUG Processing 330/638 atomic regions from SNP 98883 to 99483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:59,466 DEBUG Processing 122/711 atomic regions from SNP 36320 to 36920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:59,480 DEBUG Processing 778/826 atomic regions from SNP 233320 to 233920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,489 DEBUG Processing 660/686 atomic regions from SNP 197870 to 198470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,523 DEBUG Processing 331/638 atomic regions from SNP 99183 to 99783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:59,718 DEBUG Processing 123/711 atomic regions from SNP 36620 to 37220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:59,737 DEBUG Processing 779/826 atomic regions from SNP 233620 to 234220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,740 DEBUG Processing 332/638 atomic regions from SNP 99483 to 100083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:59,760 DEBUG Processing 661/686 atomic regions from SNP 198170 to 198770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,957 DEBUG Processing 124/711 atomic regions from SNP 36920 to 37520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:59,962 DEBUG Processing 333/638 atomic regions from SNP 99783 to 100383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:59,989 DEBUG Processing 780/826 atomic regions from SNP 233920 to 234520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,042 DEBUG Processing 662/686 atomic regions from SNP 198470 to 199070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,181 DEBUG Processing 334/638 atomic regions from SNP 100083 to 100683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:00,194 DEBUG Processing 125/711 atomic regions from SNP 37220 to 37820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:00,236 DEBUG Processing 781/826 atomic regions from SNP 234220 to 234820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,321 DEBUG Processing 663/686 atomic regions from SNP 198770 to 199370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,396 DEBUG Processing 335/638 atomic regions from SNP 100383 to 100983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:00,431 DEBUG Processing 126/711 atomic regions from SNP 37520 to 38120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:00,482 DEBUG Processing 782/826 atomic regions from SNP 234520 to 235120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,621 DEBUG Processing 664/686 atomic regions from SNP 199070 to 199670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,626 DEBUG Processing 336/638 atomic regions from SNP 100683 to 101283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:00,680 DEBUG Processing 127/711 atomic regions from SNP 37820 to 38420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:00,729 DEBUG Processing 783/826 atomic regions from SNP 234820 to 235420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,900 DEBUG Processing 337/638 atomic regions from SNP 100983 to 101583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:00,941 DEBUG Processing 665/686 atomic regions from SNP 199370 to 199970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,974 DEBUG Processing 128/711 atomic regions from SNP 38120 to 38720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:01,031 DEBUG Processing 784/826 atomic regions from SNP 235120 to 235720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,139 DEBUG Processing 338/638 atomic regions from SNP 101283 to 101883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:01,203 DEBUG Processing 666/686 atomic regions from SNP 199670 to 200270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,219 DEBUG Processing 129/711 atomic regions from SNP 38420 to 39020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:01,280 DEBUG Processing 785/826 atomic regions from SNP 235420 to 236020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,357 DEBUG Processing 339/638 atomic regions from SNP 101583 to 102183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:01,466 DEBUG Processing 130/711 atomic regions from SNP 38720 to 39320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:01,469 DEBUG Processing 667/686 atomic regions from SNP 199970 to 200570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,550 DEBUG Processing 786/826 atomic regions from SNP 235720 to 236320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,607 DEBUG Processing 340/638 atomic regions from SNP 101883 to 102483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:01,729 DEBUG Processing 131/711 atomic regions from SNP 39020 to 39620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:01,743 DEBUG Processing 668/686 atomic regions from SNP 200270 to 200870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,808 DEBUG Processing 787/826 atomic regions from SNP 236020 to 236620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,839 DEBUG Processing 341/638 atomic regions from SNP 102183 to 102783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:01,964 DEBUG Processing 132/711 atomic regions from SNP 39320 to 39920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:01,992 DEBUG Processing 669/686 atomic regions from SNP 200570 to 201170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,058 DEBUG Processing 788/826 atomic regions from SNP 236320 to 236920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,063 DEBUG Processing 342/638 atomic regions from SNP 102483 to 103083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:02,198 DEBUG Processing 133/711 atomic regions from SNP 39620 to 40220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:02,247 DEBUG Processing 670/686 atomic regions from SNP 200870 to 201470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,286 DEBUG Processing 343/638 atomic regions from SNP 102783 to 103383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:02,308 DEBUG Processing 789/826 atomic regions from SNP 236620 to 237220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,431 DEBUG Processing 134/711 atomic regions from SNP 39920 to 40520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:02,493 DEBUG Processing 671/686 atomic regions from SNP 201170 to 201770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,508 DEBUG Processing 344/638 atomic regions from SNP 103083 to 103683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:02,563 DEBUG Processing 790/826 atomic regions from SNP 236920 to 237520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,662 DEBUG Processing 135/711 atomic regions from SNP 40220 to 40820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:02,723 DEBUG Processing 345/638 atomic regions from SNP 103383 to 103983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:02,731 DEBUG Processing 672/686 atomic regions from SNP 201470 to 202070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,816 DEBUG Processing 791/826 atomic regions from SNP 237220 to 237820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,863 DEBUG Subchromosome time: 198.24394497275352, subchromosome SNPs: 212834 2025-01-31 09:49:02,863 DEBUG Estimated BADs: [2.45, 0.41, 2.45, 1.22, 0.61, 8.57, 3.67, 1.22, 4.89, 1.22, 2.45, 0.20, 0.61, 2.45, 1.22, 2.45, 7.34, 2.45] SNP counts: [2620, 7710, 7629, 20363, 69264, 2243, 2641, 18743, 2525, 16558, 4715, 8689, 3896, 13558, 8681, 4558, 8637, 9804] SNP IDs counts: [2620, 7710, 7629, 20363, 69264, 2243, 2641, 18743, 2525, 16558, 4715, 8689, 3896, 13558, 8681, 4558, 8637, 9804] Critical gap: 628458bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.68Mbp, 9.72Mbp, 13.76Mbp, 27.06Mbp, 69.75Mbp, 70.92Mbp, 72.54Mbp, 83.59Mbp, 84.91Mbp, 94.01Mbp, 96.61Mbp, 102.32Mbp, 104.53Mbp, 111.85Mbp, 116.92Mbp, 119.34Mbp, 123.94Mbp, 129.40Mbp] 2025-01-31 09:49:02,863 DEBUG chr8 time: 198.24445613101125 s 2025-01-31 09:49:02,897 DEBUG Processing 136/711 atomic regions from SNP 40520 to 41120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:02,927 DEBUG Processing 346/638 atomic regions from SNP 103683 to 104283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:02,972 DEBUG Processing 673/686 atomic regions from SNP 201770 to 202370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,005 DEBUG chr8: Fitting background model for 18 segments 2025-01-31 09:49:03,075 DEBUG Processing 792/826 atomic regions from SNP 237520 to 238120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,139 DEBUG Processing 137/711 atomic regions from SNP 40820 to 41420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:03,154 DEBUG Processing 347/638 atomic regions from SNP 103983 to 104583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:03,222 DEBUG Processing 674/686 atomic regions from SNP 202070 to 202670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,330 DEBUG Processing 793/826 atomic regions from SNP 237820 to 238420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,379 DEBUG Processing 138/711 atomic regions from SNP 41120 to 41720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:03,404 DEBUG Processing 348/638 atomic regions from SNP 104283 to 104883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:03,469 DEBUG Processing 675/686 atomic regions from SNP 202370 to 202970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,580 DEBUG Processing 794/826 atomic regions from SNP 238120 to 238720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,615 DEBUG Processing 139/711 atomic regions from SNP 41420 to 42020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:03,626 DEBUG Processing 349/638 atomic regions from SNP 104583 to 105183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:03,716 DEBUG Processing 676/686 atomic regions from SNP 202670 to 203270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,830 DEBUG Processing 795/826 atomic regions from SNP 238420 to 239020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,848 DEBUG Processing 350/638 atomic regions from SNP 104883 to 105483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:03,857 DEBUG Processing 140/711 atomic regions from SNP 41720 to 42320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:03,971 DEBUG Processing 677/686 atomic regions from SNP 202970 to 203570 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,070 DEBUG Processing 351/638 atomic regions from SNP 105183 to 105783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:04,079 DEBUG Processing 796/826 atomic regions from SNP 238720 to 239320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,099 DEBUG Processing 141/711 atomic regions from SNP 42020 to 42620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:04,225 DEBUG Processing 678/686 atomic regions from SNP 203270 to 203870 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,293 DEBUG Processing 352/638 atomic regions from SNP 105483 to 106083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:04,329 DEBUG Processing 797/826 atomic regions from SNP 239020 to 239620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,335 DEBUG Processing 142/711 atomic regions from SNP 42320 to 42920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:04,471 DEBUG Processing 679/686 atomic regions from SNP 203570 to 204170 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,508 DEBUG Processing 353/638 atomic regions from SNP 105783 to 106383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:04,570 DEBUG Processing 143/711 atomic regions from SNP 42620 to 43220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:04,578 DEBUG Processing 798/826 atomic regions from SNP 239320 to 239920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,721 DEBUG Processing 680/686 atomic regions from SNP 203870 to 204470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,723 DEBUG Processing 354/638 atomic regions from SNP 106083 to 106683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:04,806 DEBUG Processing 144/711 atomic regions from SNP 42920 to 43520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:04,818 DEBUG Processing 799/826 atomic regions from SNP 239620 to 240220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,945 DEBUG Processing 355/638 atomic regions from SNP 106383 to 106983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:04,972 DEBUG Processing 681/686 atomic regions from SNP 204170 to 204770 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,047 DEBUG Processing 145/711 atomic regions from SNP 43220 to 43820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:05,063 DEBUG Processing 800/826 atomic regions from SNP 239920 to 240520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,166 DEBUG Processing 356/638 atomic regions from SNP 106683 to 107283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:05,221 DEBUG Processing 682/686 atomic regions from SNP 204470 to 205070 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,286 DEBUG Processing 146/711 atomic regions from SNP 43520 to 44120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:05,311 DEBUG Processing 801/826 atomic regions from SNP 240220 to 240820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,387 DEBUG Processing 357/638 atomic regions from SNP 106983 to 107583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:05,470 DEBUG Processing 683/686 atomic regions from SNP 204770 to 205370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,520 DEBUG Processing 147/711 atomic regions from SNP 43820 to 44420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:05,555 DEBUG Processing 802/826 atomic regions from SNP 240520 to 241120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,608 DEBUG Processing 358/638 atomic regions from SNP 107283 to 107883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:05,719 DEBUG Processing 684/686 atomic regions from SNP 205070 to 205670 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,758 DEBUG Processing 148/711 atomic regions from SNP 44120 to 44720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:05,801 DEBUG Processing 803/826 atomic regions from SNP 240820 to 241420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,834 DEBUG Processing 359/638 atomic regions from SNP 107583 to 108183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:05,970 DEBUG Processing 685/686 atomic regions from SNP 205370 to 205970 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,999 DEBUG Processing 149/711 atomic regions from SNP 44420 to 45020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,050 DEBUG Processing 804/826 atomic regions from SNP 241120 to 241720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,051 DEBUG Processing 360/638 atomic regions from SNP 107883 to 108483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:06,218 DEBUG Processing 686/686 atomic regions from SNP 205670 to 206270 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,238 DEBUG Processing 150/711 atomic regions from SNP 44720 to 45320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,272 DEBUG Processing 361/638 atomic regions from SNP 108183 to 108783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:06,296 DEBUG Processing 805/826 atomic regions from SNP 241420 to 242020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,372 DEBUG Unique SNPs positions in subchromosome 3: 206271 2025-01-31 09:49:06,479 DEBUG Processing 151/711 atomic regions from SNP 45020 to 45620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,493 DEBUG Processing 362/638 atomic regions from SNP 108483 to 109083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:06,541 DEBUG Processing 806/826 atomic regions from SNP 241720 to 242320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,717 DEBUG Processing 363/638 atomic regions from SNP 108783 to 109383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:06,721 DEBUG Processing 152/711 atomic regions from SNP 45320 to 45920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,784 DEBUG Processing 807/826 atomic regions from SNP 242020 to 242620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,943 DEBUG Processing 364/638 atomic regions from SNP 109083 to 109683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:06,960 DEBUG Processing 153/711 atomic regions from SNP 45620 to 46220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:07,031 DEBUG Processing 808/826 atomic regions from SNP 242320 to 242920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,169 DEBUG Processing 365/638 atomic regions from SNP 109383 to 109983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:07,199 DEBUG Processing 154/711 atomic regions from SNP 45920 to 46520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:07,279 DEBUG Processing 809/826 atomic regions from SNP 242620 to 243220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,385 DEBUG Processing 366/638 atomic regions from SNP 109683 to 110283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:07,433 DEBUG Processing 155/711 atomic regions from SNP 46220 to 46820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:07,533 DEBUG Processing 810/826 atomic regions from SNP 242920 to 243520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,597 DEBUG Processing 367/638 atomic regions from SNP 109983 to 110583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:07,664 DEBUG Processing 156/711 atomic regions from SNP 46520 to 47120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:07,794 DEBUG Processing 811/826 atomic regions from SNP 243220 to 243820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,821 DEBUG Processing 368/638 atomic regions from SNP 110283 to 110883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:07,890 DEBUG Processing 157/711 atomic regions from SNP 46820 to 47420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:08,063 DEBUG Processing 369/638 atomic regions from SNP 110583 to 111183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:08,065 DEBUG Processing 812/826 atomic regions from SNP 243520 to 244120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,121 DEBUG Processing 158/711 atomic regions from SNP 47120 to 47720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:08,293 DEBUG Processing 370/638 atomic regions from SNP 110883 to 111483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:08,325 DEBUG Processing 813/826 atomic regions from SNP 243820 to 244420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,359 DEBUG Processing 159/711 atomic regions from SNP 47420 to 48020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:08,515 DEBUG Processing 371/638 atomic regions from SNP 111183 to 111783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:08,579 DEBUG Processing 814/826 atomic regions from SNP 244120 to 244720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,589 DEBUG Processing 160/711 atomic regions from SNP 47720 to 48320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:08,738 DEBUG Processing 372/638 atomic regions from SNP 111483 to 112083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:08,817 DEBUG Processing 161/711 atomic regions from SNP 48020 to 48620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:08,826 DEBUG Processing 815/826 atomic regions from SNP 244420 to 245020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,961 DEBUG Processing 373/638 atomic regions from SNP 111783 to 112383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:09,048 DEBUG Processing 162/711 atomic regions from SNP 48320 to 48920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:09,071 DEBUG Processing 816/826 atomic regions from SNP 244720 to 245320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,200 DEBUG Processing 374/638 atomic regions from SNP 112083 to 112683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:09,284 DEBUG Processing 163/711 atomic regions from SNP 48620 to 49220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:09,322 DEBUG Processing 817/826 atomic regions from SNP 245020 to 245620 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,419 DEBUG Processing 375/638 atomic regions from SNP 112383 to 112983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:09,520 DEBUG Processing 164/711 atomic regions from SNP 48920 to 49520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:09,575 DEBUG Processing 818/826 atomic regions from SNP 245320 to 245920 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,640 DEBUG Processing 376/638 atomic regions from SNP 112683 to 113283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:09,750 DEBUG Processing 165/711 atomic regions from SNP 49220 to 49820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:09,826 DEBUG Processing 819/826 atomic regions from SNP 245620 to 246220 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,867 DEBUG Processing 377/638 atomic regions from SNP 112983 to 113583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:09,984 DEBUG Processing 166/711 atomic regions from SNP 49520 to 50120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:10,071 DEBUG Processing 820/826 atomic regions from SNP 245920 to 246520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,107 DEBUG Processing 378/638 atomic regions from SNP 113283 to 113883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:10,218 DEBUG Processing 167/711 atomic regions from SNP 49820 to 50420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:10,318 DEBUG Processing 821/826 atomic regions from SNP 246220 to 246820 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,360 DEBUG Processing 379/638 atomic regions from SNP 113583 to 114183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:10,458 DEBUG Processing 168/711 atomic regions from SNP 50120 to 50720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:10,564 DEBUG Processing 822/826 atomic regions from SNP 246520 to 247120 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,580 DEBUG Processing 380/638 atomic regions from SNP 113883 to 114483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:10,700 DEBUG Processing 169/711 atomic regions from SNP 50420 to 51020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:10,803 DEBUG Processing 381/638 atomic regions from SNP 114183 to 114783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:10,816 DEBUG Processing 823/826 atomic regions from SNP 246820 to 247420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,935 DEBUG Processing 170/711 atomic regions from SNP 50720 to 51320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:11,030 DEBUG Processing 382/638 atomic regions from SNP 114483 to 115083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:11,068 DEBUG Processing 824/826 atomic regions from SNP 247120 to 247720 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,167 DEBUG Processing 171/711 atomic regions from SNP 51020 to 51620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:11,262 DEBUG Processing 383/638 atomic regions from SNP 114783 to 115383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:11,326 DEBUG Processing 825/826 atomic regions from SNP 247420 to 248020 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,400 DEBUG Processing 172/711 atomic regions from SNP 51320 to 51920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:11,484 DEBUG Processing 384/638 atomic regions from SNP 115083 to 115683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:11,587 DEBUG Processing 826/826 atomic regions from SNP 247720 to 248320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,637 DEBUG Processing 173/711 atomic regions from SNP 51620 to 52220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:11,703 DEBUG Processing 385/638 atomic regions from SNP 115383 to 115983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:11,743 DEBUG Unique SNPs positions in subchromosome 1: 248321 2025-01-31 09:49:11,867 DEBUG Processing 174/711 atomic regions from SNP 51920 to 52520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:11,917 DEBUG Processing 386/638 atomic regions from SNP 115683 to 116283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:12,097 DEBUG Processing 175/711 atomic regions from SNP 52220 to 52820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:12,134 DEBUG Processing 387/638 atomic regions from SNP 115983 to 116583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:12,330 DEBUG Processing 176/711 atomic regions from SNP 52520 to 53120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:12,357 DEBUG Processing 388/638 atomic regions from SNP 116283 to 116883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:12,527 DEBUG Subchromosome time: 199.00369996204972, subchromosome SNPs: 206271 2025-01-31 09:49:12,528 DEBUG Estimated BADs: [0.58, 4.61, 1.15, 0.29, 2.30, 0.29, 4.61, 0.38, 5.76, 0.00, 0.38, 4.61, 0.58, 3.45, 0.19, 1.15, 0.38, 2.30, 8.06, 2.30, 0.29, 1.15, 0.29, 1.15, 0.29, 1.15, 0.38, 1.15, 4.61, 1.15, 0.16, 0.58, 0.14, 1.15, 2.30, 1.15, 5.76, 1.15, 6.91, 2.30] SNP counts: [826, 2316, 3279, 2690, 1696, 2751, 2298, 2337, 1997, 16, 1377, 2947, 1188, 8113, 1515, 8420, 5692, 3299, 1667, 2877, 1828, 2735, 8391, 2097, 10207, 9312, 7841, 11366, 641, 8396, 5356, 8089, 2398, 6687, 6786, 41788, 3075, 24184, 897, 7102] SNP IDs counts: [826, 2316, 3279, 2690, 1696, 2751, 2298, 2337, 1997, 16, 1377, 2947, 1188, 8113, 1515, 8420, 5692, 3299, 1667, 2877, 1828, 2735, 8391, 2097, 10207, 9312, 7841, 11366, 641, 8396, 5356, 8089, 2398, 6687, 6786, 41788, 3075, 24184, 897, 7102] Critical gap: 675796bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 3.59Mbp, 5.13Mbp, 7.30Mbp, 12.21Mbp, 13.31Mbp, 15.89Mbp, 17.10Mbp, 19.00Mbp, 20.07Mbp[0.71Mbp], 21.18Mbp[1.62Mbp], 24.29Mbp, 25.91Mbp, 26.72Mbp, 31.23Mbp, 33.75Mbp, 38.31Mbp, 42.90Mbp, 44.82Mbp, 45.68Mbp, 47.20Mbp, 48.48Mbp, 49.97Mbp, 55.43Mbp, 56.73Mbp, 63.89Mbp, 69.03Mbp, 73.52Mbp, 79.98Mbp, 80.31Mbp, 84.91Mbp, 88.53Mbp, 93.25Mbp, 94.81Mbp, 98.65Mbp, 102.21Mbp, 126.24Mbp, 127.88Mbp, 141.03Mbp, 141.50Mbp, 145.44Mbp] 2025-01-31 09:49:12,528 DEBUG chr7 time: 199.00442074984312 s 2025-01-31 09:49:12,562 DEBUG Processing 177/711 atomic regions from SNP 52820 to 53420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:12,579 DEBUG Processing 389/638 atomic regions from SNP 116583 to 117183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:12,684 DEBUG chr7: Fitting background model for 39 segments 2025-01-31 09:49:12,797 DEBUG Processing 178/711 atomic regions from SNP 53120 to 53720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:12,805 DEBUG Processing 390/638 atomic regions from SNP 116883 to 117483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:13,039 DEBUG Processing 391/638 atomic regions from SNP 117183 to 117783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:13,049 DEBUG Processing 179/711 atomic regions from SNP 53420 to 54020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:13,263 DEBUG Processing 392/638 atomic regions from SNP 117483 to 118083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:13,289 DEBUG Processing 180/711 atomic regions from SNP 53720 to 54320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:13,479 DEBUG Processing 393/638 atomic regions from SNP 117783 to 118383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:13,530 DEBUG Processing 181/711 atomic regions from SNP 54020 to 54620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:13,694 DEBUG Processing 394/638 atomic regions from SNP 118083 to 118683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:13,782 DEBUG Processing 182/711 atomic regions from SNP 54320 to 54920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:13,913 DEBUG Processing 395/638 atomic regions from SNP 118383 to 118983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:14,017 DEBUG Processing 183/711 atomic regions from SNP 54620 to 55220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,062 DEBUG Subchromosome time: 244.65041495859623, subchromosome SNPs: 248321 2025-01-31 09:49:14,063 DEBUG Estimated BADs: [0.50, 2.01, 1.01, 3.02, 0.50, 3.02, 1.01, 0.50, 3.02, 1.01, 0.34, 3.02, 1.01, 5.03, 2.01, 8.05, 2.01, 0.50, 1.01] SNP counts: [41215, 12481, 5412, 2238, 13437, 2933, 9660, 25530, 3208, 4491, 12474, 14843, 37517, 1345, 19035, 903, 6677, 8621, 26301] SNP IDs counts: [41215, 12481, 5412, 2238, 13437, 2933, 9660, 25530, 3208, 4491, 12474, 14843, 37517, 1345, 19035, 903, 6677, 8621, 26301] Critical gap: 675539bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 28.40Mbp, 35.13Mbp, 38.23Mbp, 39.41Mbp, 47.59Mbp, 49.37Mbp, 54.59Mbp, 70.71Mbp, 72.41Mbp, 75.17Mbp, 83.00Mbp, 91.14Mbp, 112.90Mbp, 113.60Mbp, 124.66Mbp, 125.14Mbp, 128.75Mbp, 134.79Mbp, 149.74Mbp] 2025-01-31 09:49:14,063 DEBUG chr6 time: 244.65091044828296 s 2025-01-31 09:49:14,136 DEBUG Processing 396/638 atomic regions from SNP 118683 to 119283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:14,213 DEBUG chr6: Fitting background model for 19 segments 2025-01-31 09:49:14,261 DEBUG Processing 184/711 atomic regions from SNP 54920 to 55520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,356 DEBUG Processing 397/638 atomic regions from SNP 118983 to 119583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:14,503 DEBUG Processing 185/711 atomic regions from SNP 55220 to 55820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,578 DEBUG Processing 398/638 atomic regions from SNP 119283 to 119883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:14,748 DEBUG Processing 186/711 atomic regions from SNP 55520 to 56120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,805 DEBUG Processing 399/638 atomic regions from SNP 119583 to 120183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:14,992 DEBUG Processing 187/711 atomic regions from SNP 55820 to 56420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:15,044 DEBUG Processing 400/638 atomic regions from SNP 119883 to 120483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:15,231 DEBUG Processing 188/711 atomic regions from SNP 56120 to 56720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:15,295 DEBUG Processing 401/638 atomic regions from SNP 120183 to 120783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:15,473 DEBUG Processing 189/711 atomic regions from SNP 56420 to 57020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:15,520 DEBUG Processing 402/638 atomic regions from SNP 120483 to 121083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:15,718 DEBUG Processing 190/711 atomic regions from SNP 56720 to 57320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:15,754 DEBUG Processing 403/638 atomic regions from SNP 120783 to 121383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:15,964 DEBUG Processing 191/711 atomic regions from SNP 57020 to 57620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:15,993 DEBUG Processing 404/638 atomic regions from SNP 121083 to 121683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:16,205 DEBUG Processing 192/711 atomic regions from SNP 57320 to 57920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:16,230 DEBUG Processing 405/638 atomic regions from SNP 121383 to 121983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:16,441 DEBUG Processing 193/711 atomic regions from SNP 57620 to 58220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:16,464 DEBUG Processing 406/638 atomic regions from SNP 121683 to 122283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:16,676 DEBUG Processing 194/711 atomic regions from SNP 57920 to 58520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:16,695 DEBUG Processing 407/638 atomic regions from SNP 121983 to 122583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:16,914 DEBUG Processing 195/711 atomic regions from SNP 58220 to 58820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:16,921 DEBUG Processing 408/638 atomic regions from SNP 122283 to 122883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:17,139 DEBUG Processing 409/638 atomic regions from SNP 122583 to 123183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:17,150 DEBUG Processing 196/711 atomic regions from SNP 58520 to 59120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:17,356 DEBUG Processing 410/638 atomic regions from SNP 122883 to 123483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:17,384 DEBUG Processing 197/711 atomic regions from SNP 58820 to 59420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:17,586 DEBUG Processing 411/638 atomic regions from SNP 123183 to 123783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:17,622 DEBUG Processing 198/711 atomic regions from SNP 59120 to 59720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:17,821 DEBUG Processing 412/638 atomic regions from SNP 123483 to 124083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:17,865 DEBUG Processing 199/711 atomic regions from SNP 59420 to 60020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,063 DEBUG Processing 413/638 atomic regions from SNP 123783 to 124383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:18,112 DEBUG Processing 200/711 atomic regions from SNP 59720 to 60320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,292 DEBUG Processing 414/638 atomic regions from SNP 124083 to 124683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:18,362 DEBUG Processing 201/711 atomic regions from SNP 60020 to 60620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,520 DEBUG Processing 415/638 atomic regions from SNP 124383 to 124983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:18,603 DEBUG Processing 202/711 atomic regions from SNP 60320 to 60920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,747 DEBUG Processing 416/638 atomic regions from SNP 124683 to 125283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:18,845 DEBUG Processing 203/711 atomic regions from SNP 60620 to 61220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,973 DEBUG Processing 417/638 atomic regions from SNP 124983 to 125583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:19,086 DEBUG Processing 204/711 atomic regions from SNP 60920 to 61520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:19,208 DEBUG Processing 418/638 atomic regions from SNP 125283 to 125883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:19,326 DEBUG Processing 205/711 atomic regions from SNP 61220 to 61820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:19,446 DEBUG Processing 419/638 atomic regions from SNP 125583 to 126183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:19,566 DEBUG Processing 206/711 atomic regions from SNP 61520 to 62120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:19,683 DEBUG Processing 420/638 atomic regions from SNP 125883 to 126483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:19,801 DEBUG Processing 207/711 atomic regions from SNP 61820 to 62420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:19,914 DEBUG Processing 421/638 atomic regions from SNP 126183 to 126783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:20,044 DEBUG Processing 208/711 atomic regions from SNP 62120 to 62720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:20,143 DEBUG Processing 422/638 atomic regions from SNP 126483 to 127083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:20,280 DEBUG Processing 209/711 atomic regions from SNP 62420 to 63020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:20,376 DEBUG Processing 423/638 atomic regions from SNP 126783 to 127383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:20,516 DEBUG Processing 210/711 atomic regions from SNP 62720 to 63320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:20,604 DEBUG Processing 424/638 atomic regions from SNP 127083 to 127683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:20,749 DEBUG Processing 211/711 atomic regions from SNP 63020 to 63620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:20,831 DEBUG Processing 425/638 atomic regions from SNP 127383 to 127983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:20,991 DEBUG Processing 212/711 atomic regions from SNP 63320 to 63920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:21,064 DEBUG Processing 426/638 atomic regions from SNP 127683 to 128283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:21,245 DEBUG Processing 213/711 atomic regions from SNP 63620 to 64220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:21,296 DEBUG Processing 427/638 atomic regions from SNP 127983 to 128583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:21,482 DEBUG Processing 214/711 atomic regions from SNP 63920 to 64520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:21,512 DEBUG Processing 428/638 atomic regions from SNP 128283 to 128883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:21,725 DEBUG Processing 215/711 atomic regions from SNP 64220 to 64820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:21,733 DEBUG Processing 429/638 atomic regions from SNP 128583 to 129183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:21,967 DEBUG Processing 430/638 atomic regions from SNP 128883 to 129483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:21,971 DEBUG Processing 216/711 atomic regions from SNP 64520 to 65120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,189 DEBUG Processing 431/638 atomic regions from SNP 129183 to 129783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:22,212 DEBUG Processing 217/711 atomic regions from SNP 64820 to 65420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,412 DEBUG Processing 432/638 atomic regions from SNP 129483 to 130083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:22,447 DEBUG Processing 218/711 atomic regions from SNP 65120 to 65720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,638 DEBUG Processing 433/638 atomic regions from SNP 129783 to 130383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:22,680 DEBUG Processing 219/711 atomic regions from SNP 65420 to 66020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,857 DEBUG Processing 434/638 atomic regions from SNP 130083 to 130683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:22,918 DEBUG Processing 220/711 atomic regions from SNP 65720 to 66320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,082 DEBUG Processing 435/638 atomic regions from SNP 130383 to 130983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:23,166 DEBUG Processing 221/711 atomic regions from SNP 66020 to 66620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,309 DEBUG Processing 436/638 atomic regions from SNP 130683 to 131283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:23,410 DEBUG Processing 222/711 atomic regions from SNP 66320 to 66920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,533 DEBUG Processing 437/638 atomic regions from SNP 130983 to 131583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:23,571 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:49:23,648 DEBUG Processing 223/711 atomic regions from SNP 66620 to 67220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,761 DEBUG Processing 438/638 atomic regions from SNP 131283 to 131883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:23,883 DEBUG Processing 224/711 atomic regions from SNP 66920 to 67520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,989 DEBUG Processing 439/638 atomic regions from SNP 131583 to 132183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:24,132 DEBUG Processing 225/711 atomic regions from SNP 67220 to 67820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:24,219 DEBUG Processing 440/638 atomic regions from SNP 131883 to 132483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:24,370 DEBUG Processing 226/711 atomic regions from SNP 67520 to 68120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:24,447 DEBUG Processing 441/638 atomic regions from SNP 132183 to 132783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:24,614 DEBUG Processing 227/711 atomic regions from SNP 67820 to 68420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:24,675 DEBUG Processing 442/638 atomic regions from SNP 132483 to 133083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:24,881 DEBUG Processing 228/711 atomic regions from SNP 68120 to 68720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:24,890 DEBUG Processing 443/638 atomic regions from SNP 132783 to 133383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:25,106 DEBUG Processing 444/638 atomic regions from SNP 133083 to 133683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:25,130 DEBUG Processing 229/711 atomic regions from SNP 68420 to 69020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:25,331 DEBUG Processing 445/638 atomic regions from SNP 133383 to 133983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:25,374 DEBUG Processing 230/711 atomic regions from SNP 68720 to 69320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:25,565 DEBUG Processing 446/638 atomic regions from SNP 133683 to 134283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:25,620 DEBUG Processing 231/711 atomic regions from SNP 69020 to 69620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:25,796 DEBUG Processing 447/638 atomic regions from SNP 133983 to 134583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:25,867 DEBUG Processing 232/711 atomic regions from SNP 69320 to 69920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:26,017 DEBUG Processing 448/638 atomic regions from SNP 134283 to 134883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:26,134 DEBUG Processing 233/711 atomic regions from SNP 69620 to 70220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:26,237 DEBUG Processing 449/638 atomic regions from SNP 134583 to 135183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:26,403 DEBUG Processing 234/711 atomic regions from SNP 69920 to 70520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:26,466 DEBUG Processing 450/638 atomic regions from SNP 134883 to 135483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:26,678 DEBUG Processing 235/711 atomic regions from SNP 70220 to 70820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:26,697 DEBUG Processing 451/638 atomic regions from SNP 135183 to 135783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:26,924 DEBUG Processing 452/638 atomic regions from SNP 135483 to 136083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:26,937 DEBUG Processing 236/711 atomic regions from SNP 70520 to 71120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:27,152 DEBUG Processing 453/638 atomic regions from SNP 135783 to 136383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:27,183 DEBUG Processing 237/711 atomic regions from SNP 70820 to 71420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:27,380 DEBUG Processing 454/638 atomic regions from SNP 136083 to 136683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:27,424 DEBUG Processing 238/711 atomic regions from SNP 71120 to 71720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:27,607 DEBUG Processing 455/638 atomic regions from SNP 136383 to 136983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:27,664 DEBUG Processing 239/711 atomic regions from SNP 71420 to 72020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:27,833 DEBUG Processing 456/638 atomic regions from SNP 136683 to 137283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:27,904 DEBUG Processing 240/711 atomic regions from SNP 71720 to 72320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,060 DEBUG Processing 457/638 atomic regions from SNP 136983 to 137583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:28,141 DEBUG Processing 241/711 atomic regions from SNP 72020 to 72620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,281 DEBUG Processing 458/638 atomic regions from SNP 137283 to 137883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:28,379 DEBUG Processing 242/711 atomic regions from SNP 72320 to 72920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,508 DEBUG Processing 459/638 atomic regions from SNP 137583 to 138183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:28,620 DEBUG Processing 243/711 atomic regions from SNP 72620 to 73220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,743 DEBUG Processing 460/638 atomic regions from SNP 137883 to 138483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:28,871 DEBUG Processing 244/711 atomic regions from SNP 72920 to 73520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,979 DEBUG Processing 461/638 atomic regions from SNP 138183 to 138783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:29,123 DEBUG Processing 245/711 atomic regions from SNP 73220 to 73820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:29,233 DEBUG Processing 462/638 atomic regions from SNP 138483 to 139083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:29,363 DEBUG Processing 246/711 atomic regions from SNP 73520 to 74120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:29,477 DEBUG Processing 463/638 atomic regions from SNP 138783 to 139383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:29,634 DEBUG Processing 247/711 atomic regions from SNP 73820 to 74420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:29,702 DEBUG Processing 464/638 atomic regions from SNP 139083 to 139683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:29,886 DEBUG Processing 248/711 atomic regions from SNP 74120 to 74720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:29,931 DEBUG Processing 465/638 atomic regions from SNP 139383 to 139983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:30,131 DEBUG Processing 249/711 atomic regions from SNP 74420 to 75020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:30,163 DEBUG Processing 466/638 atomic regions from SNP 139683 to 140283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:30,373 DEBUG Processing 250/711 atomic regions from SNP 74720 to 75320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:30,390 DEBUG Processing 467/638 atomic regions from SNP 139983 to 140583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:30,612 DEBUG Processing 468/638 atomic regions from SNP 140283 to 140883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:30,619 DEBUG Processing 251/711 atomic regions from SNP 75020 to 75620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:30,866 DEBUG Processing 469/638 atomic regions from SNP 140583 to 141183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:30,883 DEBUG Processing 252/711 atomic regions from SNP 75320 to 75920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:31,131 DEBUG Processing 470/638 atomic regions from SNP 140883 to 141483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:31,192 DEBUG Processing 253/711 atomic regions from SNP 75620 to 76220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:31,398 DEBUG Processing 471/638 atomic regions from SNP 141183 to 141783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:31,455 DEBUG Processing 254/711 atomic regions from SNP 75920 to 76520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:31,741 DEBUG Processing 472/638 atomic regions from SNP 141483 to 142083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:31,804 DEBUG Processing 255/711 atomic regions from SNP 76220 to 76820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:32,065 DEBUG Processing 473/638 atomic regions from SNP 141783 to 142383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:32,116 DEBUG Processing 256/711 atomic regions from SNP 76520 to 77120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:32,305 DEBUG Processing 474/638 atomic regions from SNP 142083 to 142683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:32,380 DEBUG Processing 257/711 atomic regions from SNP 76820 to 77420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:32,527 DEBUG Processing 475/638 atomic regions from SNP 142383 to 142983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:32,631 DEBUG Processing 258/711 atomic regions from SNP 77120 to 77720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:32,757 DEBUG Processing 476/638 atomic regions from SNP 142683 to 143283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:32,882 DEBUG Processing 259/711 atomic regions from SNP 77420 to 78020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:32,994 DEBUG Processing 477/638 atomic regions from SNP 142983 to 143583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:33,129 DEBUG Processing 260/711 atomic regions from SNP 77720 to 78320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:33,236 DEBUG Processing 478/638 atomic regions from SNP 143283 to 143883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:33,375 DEBUG Processing 261/711 atomic regions from SNP 78020 to 78620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:33,469 DEBUG Processing 479/638 atomic regions from SNP 143583 to 144183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:33,623 DEBUG Processing 262/711 atomic regions from SNP 78320 to 78920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:33,714 DEBUG Processing 480/638 atomic regions from SNP 143883 to 144483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:33,868 DEBUG Processing 263/711 atomic regions from SNP 78620 to 79220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:33,953 DEBUG Processing 481/638 atomic regions from SNP 144183 to 144783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:34,106 DEBUG Processing 264/711 atomic regions from SNP 78920 to 79520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:34,188 DEBUG Processing 482/638 atomic regions from SNP 144483 to 145083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:34,344 DEBUG Processing 265/711 atomic regions from SNP 79220 to 79820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:34,410 DEBUG Processing 483/638 atomic regions from SNP 144783 to 145383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:34,585 DEBUG Processing 266/711 atomic regions from SNP 79520 to 80120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:34,632 DEBUG Processing 484/638 atomic regions from SNP 145083 to 145683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:34,829 DEBUG Processing 267/711 atomic regions from SNP 79820 to 80420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:34,864 DEBUG Processing 485/638 atomic regions from SNP 145383 to 145983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:35,073 DEBUG Processing 268/711 atomic regions from SNP 80120 to 80720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:35,091 DEBUG Processing 486/638 atomic regions from SNP 145683 to 146283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:35,315 DEBUG Processing 269/711 atomic regions from SNP 80420 to 81020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:35,316 DEBUG Processing 487/638 atomic regions from SNP 145983 to 146583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:35,549 DEBUG Processing 488/638 atomic regions from SNP 146283 to 146883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:35,565 DEBUG Processing 270/711 atomic regions from SNP 80720 to 81320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:35,778 DEBUG Processing 489/638 atomic regions from SNP 146583 to 147183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:35,815 DEBUG Processing 271/711 atomic regions from SNP 81020 to 81620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:35,995 DEBUG Processing 490/638 atomic regions from SNP 146883 to 147483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:36,061 DEBUG Processing 272/711 atomic regions from SNP 81320 to 81920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:36,212 DEBUG Processing 491/638 atomic regions from SNP 147183 to 147783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:36,306 DEBUG Processing 273/711 atomic regions from SNP 81620 to 82220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:36,435 DEBUG Processing 492/638 atomic regions from SNP 147483 to 148083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:36,552 DEBUG Processing 274/711 atomic regions from SNP 81920 to 82520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:36,656 DEBUG Processing 493/638 atomic regions from SNP 147783 to 148383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:36,810 DEBUG Processing 275/711 atomic regions from SNP 82220 to 82820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:36,877 DEBUG Processing 494/638 atomic regions from SNP 148083 to 148683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:37,072 DEBUG Processing 276/711 atomic regions from SNP 82520 to 83120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:37,103 DEBUG Processing 495/638 atomic regions from SNP 148383 to 148983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:37,326 DEBUG Processing 277/711 atomic regions from SNP 82820 to 83420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:37,340 DEBUG Processing 496/638 atomic regions from SNP 148683 to 149283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:37,570 DEBUG Processing 497/638 atomic regions from SNP 148983 to 149583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:37,574 DEBUG Processing 278/711 atomic regions from SNP 83120 to 83720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:37,671 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:49:37,799 DEBUG Processing 498/638 atomic regions from SNP 149283 to 149883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:37,822 DEBUG Processing 279/711 atomic regions from SNP 83420 to 84020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,029 DEBUG Processing 499/638 atomic regions from SNP 149583 to 150183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:38,063 DEBUG Processing 280/711 atomic regions from SNP 83720 to 84320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,270 DEBUG Processing 500/638 atomic regions from SNP 149883 to 150483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:38,305 DEBUG Processing 281/711 atomic regions from SNP 84020 to 84620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,501 DEBUG Processing 501/638 atomic regions from SNP 150183 to 150783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:38,556 DEBUG Processing 282/711 atomic regions from SNP 84320 to 84920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,730 DEBUG Processing 502/638 atomic regions from SNP 150483 to 151083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:38,808 DEBUG Processing 283/711 atomic regions from SNP 84620 to 85220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,955 DEBUG Processing 503/638 atomic regions from SNP 150783 to 151383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:39,060 DEBUG Processing 284/711 atomic regions from SNP 84920 to 85520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:39,183 DEBUG Processing 504/638 atomic regions from SNP 151083 to 151683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:39,307 DEBUG Processing 285/711 atomic regions from SNP 85220 to 85820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:39,412 DEBUG Processing 505/638 atomic regions from SNP 151383 to 151983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:39,554 DEBUG Processing 286/711 atomic regions from SNP 85520 to 86120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:39,646 DEBUG Processing 506/638 atomic regions from SNP 151683 to 152283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:39,831 DEBUG Processing 287/711 atomic regions from SNP 85820 to 86420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:39,895 DEBUG Processing 507/638 atomic regions from SNP 151983 to 152583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:40,051 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:49:40,053 DEBUG chr11: Signal quantile: 0.988. signal threshold: 10. Best RMSEA: 0.015 2025-01-31 09:49:40,075 DEBUG Processing 288/711 atomic regions from SNP 86120 to 86720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:40,131 DEBUG Processing 508/638 atomic regions from SNP 152283 to 152883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:40,323 DEBUG Processing 289/711 atomic regions from SNP 86420 to 87020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:40,363 DEBUG Processing 509/638 atomic regions from SNP 152583 to 153183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:40,571 DEBUG Processing 290/711 atomic regions from SNP 86720 to 87320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:40,590 DEBUG Processing 510/638 atomic regions from SNP 152883 to 153483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:40,817 DEBUG Processing 291/711 atomic regions from SNP 87020 to 87620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:40,819 DEBUG Processing 511/638 atomic regions from SNP 153183 to 153783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:41,100 DEBUG Processing 292/711 atomic regions from SNP 87320 to 87920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:41,107 DEBUG Processing 512/638 atomic regions from SNP 153483 to 154083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:41,453 DEBUG Processing 513/638 atomic regions from SNP 153783 to 154383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:41,458 DEBUG Processing 293/711 atomic regions from SNP 87620 to 88220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:41,738 DEBUG Processing 514/638 atomic regions from SNP 154083 to 154683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:41,755 DEBUG Processing 294/711 atomic regions from SNP 87920 to 88520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,017 DEBUG Processing 515/638 atomic regions from SNP 154383 to 154983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:42,040 DEBUG Processing 295/711 atomic regions from SNP 88220 to 88820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,125 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:49:42,259 DEBUG Processing 516/638 atomic regions from SNP 154683 to 155283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:42,298 DEBUG Processing 296/711 atomic regions from SNP 88520 to 89120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,548 DEBUG Processing 517/638 atomic regions from SNP 154983 to 155583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:42,592 DEBUG Processing 297/711 atomic regions from SNP 88820 to 89420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,826 DEBUG Processing 518/638 atomic regions from SNP 155283 to 155883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:42,895 DEBUG Processing 298/711 atomic regions from SNP 89120 to 89720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,986 DEBUG chr11 total SNP count: 212189 2025-01-31 09:49:42,986 DEBUG chr11 length: 122082543 2025-01-31 09:49:42,986 DEBUG ----------------------------------------- 2025-01-31 09:49:42,986 INFO Processing SNPs in chr11 2025-01-31 09:49:43,067 DEBUG Processing 519/638 atomic regions from SNP 155583 to 156183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:43,150 DEBUG Processing 299/711 atomic regions from SNP 89420 to 90020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:43,211 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 212189)] 2025-01-31 09:49:43,342 DEBUG Processing 520/638 atomic regions from SNP 155883 to 156483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:43,364 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:43,437 DEBUG Processing 300/711 atomic regions from SNP 89720 to 90320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:43,610 DEBUG Processing 521/638 atomic regions from SNP 156183 to 156783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:43,724 DEBUG Processing 301/711 atomic regions from SNP 90020 to 90620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:43,868 DEBUG Processing 522/638 atomic regions from SNP 156483 to 157083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:44,005 DEBUG Processing 302/711 atomic regions from SNP 90320 to 90920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:44,130 DEBUG Processing 523/638 atomic regions from SNP 156783 to 157383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:44,254 DEBUG Processing 303/711 atomic regions from SNP 90620 to 91220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:44,365 DEBUG Processing 524/638 atomic regions from SNP 157083 to 157683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:44,503 DEBUG Processing 304/711 atomic regions from SNP 90920 to 91520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:44,594 DEBUG Processing 525/638 atomic regions from SNP 157383 to 157983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:44,751 DEBUG Processing 305/711 atomic regions from SNP 91220 to 91820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:44,822 DEBUG Processing 526/638 atomic regions from SNP 157683 to 158283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:45,000 DEBUG Processing 306/711 atomic regions from SNP 91520 to 92120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:45,040 DEBUG Processing 527/638 atomic regions from SNP 157983 to 158583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:45,247 DEBUG Processing 307/711 atomic regions from SNP 91820 to 92420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:45,274 DEBUG Processing 528/638 atomic regions from SNP 158283 to 158883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:45,498 DEBUG Processing 308/711 atomic regions from SNP 92120 to 92720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:45,503 DEBUG Processing 529/638 atomic regions from SNP 158583 to 159183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:45,727 DEBUG Processing 530/638 atomic regions from SNP 158883 to 159483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:45,744 DEBUG Processing 309/711 atomic regions from SNP 92420 to 93020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:45,957 DEBUG Processing 531/638 atomic regions from SNP 159183 to 159783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:45,986 DEBUG Processing 310/711 atomic regions from SNP 92720 to 93320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,185 DEBUG Processing 532/638 atomic regions from SNP 159483 to 160083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:46,226 DEBUG Processing 311/711 atomic regions from SNP 93020 to 93620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,418 DEBUG Processing 533/638 atomic regions from SNP 159783 to 160383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:46,481 DEBUG Processing 312/711 atomic regions from SNP 93320 to 93920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,652 DEBUG Processing 534/638 atomic regions from SNP 160083 to 160683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:46,761 DEBUG Processing 313/711 atomic regions from SNP 93620 to 94220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,885 DEBUG Processing 535/638 atomic regions from SNP 160383 to 160983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:47,011 DEBUG Processing 314/711 atomic regions from SNP 93920 to 94520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:47,119 DEBUG Processing 536/638 atomic regions from SNP 160683 to 161283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:47,265 DEBUG Processing 315/711 atomic regions from SNP 94220 to 94820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:47,350 DEBUG Processing 537/638 atomic regions from SNP 160983 to 161583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:47,537 DEBUG Processing 316/711 atomic regions from SNP 94520 to 95120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:47,587 DEBUG Processing 538/638 atomic regions from SNP 161283 to 161883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:47,811 DEBUG Processing 317/711 atomic regions from SNP 94820 to 95420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:47,816 DEBUG Processing 539/638 atomic regions from SNP 161583 to 162183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:48,038 DEBUG Processing 540/638 atomic regions from SNP 161883 to 162483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:48,073 DEBUG Processing 318/711 atomic regions from SNP 95120 to 95720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:48,254 DEBUG Processing 541/638 atomic regions from SNP 162183 to 162783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:48,316 DEBUG Processing 319/711 atomic regions from SNP 95420 to 96020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:48,470 DEBUG Processing 542/638 atomic regions from SNP 162483 to 163083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:48,570 DEBUG Processing 320/711 atomic regions from SNP 95720 to 96320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:48,697 DEBUG Processing 543/638 atomic regions from SNP 162783 to 163383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:48,824 DEBUG Processing 321/711 atomic regions from SNP 96020 to 96620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:48,931 DEBUG Processing 544/638 atomic regions from SNP 163083 to 163683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:49,078 DEBUG Processing 322/711 atomic regions from SNP 96320 to 96920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:49,171 DEBUG Processing 545/638 atomic regions from SNP 163383 to 163983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:49,328 DEBUG Processing 323/711 atomic regions from SNP 96620 to 97220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:49,408 DEBUG Processing 546/638 atomic regions from SNP 163683 to 164283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:49,570 DEBUG Processing 324/711 atomic regions from SNP 96920 to 97520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:49,646 DEBUG Processing 547/638 atomic regions from SNP 163983 to 164583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:49,812 DEBUG Processing 325/711 atomic regions from SNP 97220 to 97820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:49,881 DEBUG Processing 548/638 atomic regions from SNP 164283 to 164883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:50,056 DEBUG Processing 326/711 atomic regions from SNP 97520 to 98120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:50,118 DEBUG Processing 549/638 atomic regions from SNP 164583 to 165183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:50,299 DEBUG Processing 327/711 atomic regions from SNP 97820 to 98420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:50,351 DEBUG Processing 550/638 atomic regions from SNP 164883 to 165483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:50,537 DEBUG Processing 328/711 atomic regions from SNP 98120 to 98720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:50,580 DEBUG Processing 551/638 atomic regions from SNP 165183 to 165783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:50,807 DEBUG Processing 552/638 atomic regions from SNP 165483 to 166083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:50,811 DEBUG Processing 329/711 atomic regions from SNP 98420 to 99020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,040 DEBUG Processing 553/638 atomic regions from SNP 165783 to 166383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:51,069 DEBUG Processing 330/711 atomic regions from SNP 98720 to 99320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,269 DEBUG Processing 554/638 atomic regions from SNP 166083 to 166683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:51,310 DEBUG Processing 331/711 atomic regions from SNP 99020 to 99620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,500 DEBUG Processing 555/638 atomic regions from SNP 166383 to 166983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:51,549 DEBUG Processing 332/711 atomic regions from SNP 99320 to 99920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,737 DEBUG Processing 556/638 atomic regions from SNP 166683 to 167283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:51,789 DEBUG Processing 333/711 atomic regions from SNP 99620 to 100220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,795 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:49:51,796 DEBUG chr13: Signal quantile: 0.993. signal threshold: 10. Best RMSEA: 0.017 2025-01-31 09:49:51,974 DEBUG Processing 557/638 atomic regions from SNP 166983 to 167583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:52,030 DEBUG Processing 334/711 atomic regions from SNP 99920 to 100520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:52,208 DEBUG Processing 558/638 atomic regions from SNP 167283 to 167883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:52,272 DEBUG Processing 335/711 atomic regions from SNP 100220 to 100820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:52,441 DEBUG Processing 559/638 atomic regions from SNP 167583 to 168183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:52,514 DEBUG Processing 336/711 atomic regions from SNP 100520 to 101120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:52,671 DEBUG Processing 560/638 atomic regions from SNP 167883 to 168483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:52,755 DEBUG Processing 337/711 atomic regions from SNP 100820 to 101420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:52,904 DEBUG Processing 561/638 atomic regions from SNP 168183 to 168783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:53,005 DEBUG Processing 338/711 atomic regions from SNP 101120 to 101720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:53,135 DEBUG Processing 562/638 atomic regions from SNP 168483 to 169083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:53,262 DEBUG Processing 339/711 atomic regions from SNP 101420 to 102020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:53,368 DEBUG Processing 563/638 atomic regions from SNP 168783 to 169383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:53,508 DEBUG Processing 340/711 atomic regions from SNP 101720 to 102320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:53,596 DEBUG Processing 564/638 atomic regions from SNP 169083 to 169683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:53,751 DEBUG Processing 341/711 atomic regions from SNP 102020 to 102620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:53,819 DEBUG Processing 565/638 atomic regions from SNP 169383 to 169983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:53,998 DEBUG Processing 342/711 atomic regions from SNP 102320 to 102920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:54,054 DEBUG Processing 566/638 atomic regions from SNP 169683 to 170283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:54,184 DEBUG chr13 total SNP count: 201057 2025-01-31 09:49:54,184 DEBUG chr13 length: 120421639 2025-01-31 09:49:54,184 DEBUG ----------------------------------------- 2025-01-31 09:49:54,184 INFO Processing SNPs in chr13 2025-01-31 09:49:54,256 DEBUG Processing 343/711 atomic regions from SNP 102620 to 103220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:54,288 DEBUG Processing 567/638 atomic regions from SNP 169983 to 170583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:54,393 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 201057)] 2025-01-31 09:49:54,507 DEBUG Processing 344/711 atomic regions from SNP 102920 to 103520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:54,527 DEBUG Processing 568/638 atomic regions from SNP 170283 to 170883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:54,533 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:54,750 DEBUG Processing 345/711 atomic regions from SNP 103220 to 103820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:54,762 DEBUG Processing 569/638 atomic regions from SNP 170583 to 171183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:54,994 DEBUG Processing 570/638 atomic regions from SNP 170883 to 171483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:55,002 DEBUG Processing 346/711 atomic regions from SNP 103520 to 104120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:55,230 DEBUG Processing 571/638 atomic regions from SNP 171183 to 171783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:55,254 DEBUG Processing 347/711 atomic regions from SNP 103820 to 104420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:55,471 DEBUG Processing 572/638 atomic regions from SNP 171483 to 172083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:55,496 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:49:55,498 DEBUG chr12: Signal quantile: 0.995. signal threshold: 9. Best RMSEA: 0.025 2025-01-31 09:49:55,515 DEBUG Processing 348/711 atomic regions from SNP 104120 to 104720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:55,709 DEBUG Processing 573/638 atomic regions from SNP 171783 to 172383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:55,785 DEBUG Processing 349/711 atomic regions from SNP 104420 to 105020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:55,940 DEBUG Processing 574/638 atomic regions from SNP 172083 to 172683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:56,033 DEBUG Processing 350/711 atomic regions from SNP 104720 to 105320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:56,168 DEBUG Processing 575/638 atomic regions from SNP 172383 to 172983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:56,273 DEBUG Processing 351/711 atomic regions from SNP 105020 to 105620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:56,393 DEBUG Processing 576/638 atomic regions from SNP 172683 to 173283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:56,513 DEBUG Processing 352/711 atomic regions from SNP 105320 to 105920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:56,623 DEBUG Processing 577/638 atomic regions from SNP 172983 to 173583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:56,763 DEBUG Processing 353/711 atomic regions from SNP 105620 to 106220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:56,861 DEBUG Processing 578/638 atomic regions from SNP 173283 to 173883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:57,014 DEBUG Processing 354/711 atomic regions from SNP 105920 to 106520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:57,105 DEBUG Processing 579/638 atomic regions from SNP 173583 to 174183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:57,299 DEBUG Processing 355/711 atomic regions from SNP 106220 to 106820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:57,339 DEBUG Processing 580/638 atomic regions from SNP 173883 to 174483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:57,554 DEBUG Processing 356/711 atomic regions from SNP 106520 to 107120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:57,572 DEBUG Processing 581/638 atomic regions from SNP 174183 to 174783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:57,809 DEBUG Processing 582/638 atomic regions from SNP 174483 to 175083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:57,831 DEBUG Processing 357/711 atomic regions from SNP 106820 to 107420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:57,892 DEBUG chr12 total SNP count: 192199 2025-01-31 09:49:57,892 DEBUG chr12 length: 120129022 2025-01-31 09:49:57,892 DEBUG ----------------------------------------- 2025-01-31 09:49:57,892 INFO Processing SNPs in chr12 2025-01-31 09:49:58,047 DEBUG Processing 583/638 atomic regions from SNP 174783 to 175383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:58,096 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 192199)] 2025-01-31 09:49:58,101 DEBUG Processing 358/711 atomic regions from SNP 107120 to 107720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:58,235 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:58,277 DEBUG Processing 584/638 atomic regions from SNP 175083 to 175683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:58,360 DEBUG Processing 359/711 atomic regions from SNP 107420 to 108020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:58,516 DEBUG Processing 585/638 atomic regions from SNP 175383 to 175983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:58,617 DEBUG Processing 360/711 atomic regions from SNP 107720 to 108320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:58,742 DEBUG Processing 586/638 atomic regions from SNP 175683 to 176283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:58,866 DEBUG Processing 361/711 atomic regions from SNP 108020 to 108620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:58,968 DEBUG Processing 587/638 atomic regions from SNP 175983 to 176583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:59,119 DEBUG Processing 362/711 atomic regions from SNP 108320 to 108920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,199 DEBUG Processing 588/638 atomic regions from SNP 176283 to 176883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:59,368 DEBUG Processing 363/711 atomic regions from SNP 108620 to 109220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,432 DEBUG Processing 589/638 atomic regions from SNP 176583 to 177183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:59,641 DEBUG Processing 364/711 atomic regions from SNP 108920 to 109520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,671 DEBUG Processing 590/638 atomic regions from SNP 176883 to 177483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:59,901 DEBUG Processing 365/711 atomic regions from SNP 109220 to 109820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,904 DEBUG Processing 591/638 atomic regions from SNP 177183 to 177783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:00,145 DEBUG Processing 592/638 atomic regions from SNP 177483 to 178083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:00,163 DEBUG Processing 366/711 atomic regions from SNP 109520 to 110120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:00,383 DEBUG Processing 593/638 atomic regions from SNP 177783 to 178383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:00,430 DEBUG Processing 367/711 atomic regions from SNP 109820 to 110420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:00,617 DEBUG Processing 594/638 atomic regions from SNP 178083 to 178683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:00,669 DEBUG Processing 368/711 atomic regions from SNP 110120 to 110720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:00,860 DEBUG Processing 595/638 atomic regions from SNP 178383 to 178983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:00,923 DEBUG Processing 369/711 atomic regions from SNP 110420 to 111020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,095 DEBUG Processing 596/638 atomic regions from SNP 178683 to 179283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:01,192 DEBUG Processing 370/711 atomic regions from SNP 110720 to 111320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,340 DEBUG Processing 597/638 atomic regions from SNP 178983 to 179583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:01,452 DEBUG Processing 371/711 atomic regions from SNP 111020 to 111620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,577 DEBUG Processing 598/638 atomic regions from SNP 179283 to 179883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:01,703 DEBUG Processing 372/711 atomic regions from SNP 111320 to 111920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,804 DEBUG Processing 599/638 atomic regions from SNP 179583 to 180183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:01,961 DEBUG Processing 373/711 atomic regions from SNP 111620 to 112220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:02,026 DEBUG Processing 600/638 atomic regions from SNP 179883 to 180483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:02,220 DEBUG Processing 374/711 atomic regions from SNP 111920 to 112520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:02,261 DEBUG Processing 601/638 atomic regions from SNP 180183 to 180783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:02,481 DEBUG Processing 375/711 atomic regions from SNP 112220 to 112820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:02,497 DEBUG Processing 602/638 atomic regions from SNP 180483 to 181083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:02,729 DEBUG Processing 603/638 atomic regions from SNP 180783 to 181383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:02,736 DEBUG Processing 376/711 atomic regions from SNP 112520 to 113120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:02,962 DEBUG Processing 604/638 atomic regions from SNP 181083 to 181683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:02,989 DEBUG Processing 377/711 atomic regions from SNP 112820 to 113420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,197 DEBUG Processing 605/638 atomic regions from SNP 181383 to 181983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:03,239 DEBUG Processing 378/711 atomic regions from SNP 113120 to 113720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,437 DEBUG Processing 606/638 atomic regions from SNP 181683 to 182283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:03,493 DEBUG Processing 379/711 atomic regions from SNP 113420 to 114020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,679 DEBUG Processing 607/638 atomic regions from SNP 181983 to 182583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:03,745 DEBUG Processing 380/711 atomic regions from SNP 113720 to 114320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,915 DEBUG Processing 608/638 atomic regions from SNP 182283 to 182883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:04,004 DEBUG Processing 381/711 atomic regions from SNP 114020 to 114620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:04,142 DEBUG Processing 609/638 atomic regions from SNP 182583 to 183183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:04,262 DEBUG Processing 382/711 atomic regions from SNP 114320 to 114920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:04,357 DEBUG Processing 610/638 atomic regions from SNP 182883 to 183483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:04,510 DEBUG Processing 383/711 atomic regions from SNP 114620 to 115220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:04,582 DEBUG Processing 611/638 atomic regions from SNP 183183 to 183783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:04,757 DEBUG Processing 384/711 atomic regions from SNP 114920 to 115520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:04,819 DEBUG Processing 612/638 atomic regions from SNP 183483 to 184083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:05,018 DEBUG Processing 385/711 atomic regions from SNP 115220 to 115820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,059 DEBUG Processing 613/638 atomic regions from SNP 183783 to 184383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:05,271 DEBUG Processing 386/711 atomic regions from SNP 115520 to 116120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,303 DEBUG Processing 614/638 atomic regions from SNP 184083 to 184683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:05,525 DEBUG Processing 387/711 atomic regions from SNP 115820 to 116420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,542 DEBUG Processing 615/638 atomic regions from SNP 184383 to 184983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:05,773 DEBUG Processing 388/711 atomic regions from SNP 116120 to 116720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,774 DEBUG Processing 616/638 atomic regions from SNP 184683 to 185283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:06,000 DEBUG Processing 617/638 atomic regions from SNP 184983 to 185583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:06,016 DEBUG Processing 389/711 atomic regions from SNP 116420 to 117020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:06,239 DEBUG Processing 618/638 atomic regions from SNP 185283 to 185883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:06,267 DEBUG Processing 390/711 atomic regions from SNP 116720 to 117320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:06,473 DEBUG Processing 619/638 atomic regions from SNP 185583 to 186183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:06,514 DEBUG Processing 391/711 atomic regions from SNP 117020 to 117620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:06,714 DEBUG Processing 620/638 atomic regions from SNP 185883 to 186483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:06,762 DEBUG Processing 392/711 atomic regions from SNP 117320 to 117920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:06,976 DEBUG Processing 621/638 atomic regions from SNP 186183 to 186783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:07,022 DEBUG Processing 393/711 atomic regions from SNP 117620 to 118220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:07,218 DEBUG Processing 622/638 atomic regions from SNP 186483 to 187083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:07,279 DEBUG Processing 394/711 atomic regions from SNP 117920 to 118520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:07,460 DEBUG Processing 623/638 atomic regions from SNP 186783 to 187383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:07,543 DEBUG Processing 395/711 atomic regions from SNP 118220 to 118820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:07,705 DEBUG Processing 624/638 atomic regions from SNP 187083 to 187683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:07,798 DEBUG Processing 396/711 atomic regions from SNP 118520 to 119120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:07,938 DEBUG Processing 625/638 atomic regions from SNP 187383 to 187983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:08,051 DEBUG Processing 397/711 atomic regions from SNP 118820 to 119420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:08,175 DEBUG Processing 626/638 atomic regions from SNP 187683 to 188283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:08,322 DEBUG Processing 398/711 atomic regions from SNP 119120 to 119720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:08,419 DEBUG Processing 627/638 atomic regions from SNP 187983 to 188583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:08,581 DEBUG Processing 399/711 atomic regions from SNP 119420 to 120020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:08,661 DEBUG Processing 628/638 atomic regions from SNP 188283 to 188883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:08,826 DEBUG Processing 400/711 atomic regions from SNP 119720 to 120320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:08,897 DEBUG Processing 629/638 atomic regions from SNP 188583 to 189183 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:09,072 DEBUG Processing 401/711 atomic regions from SNP 120020 to 120620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:09,123 DEBUG Processing 630/638 atomic regions from SNP 188883 to 189483 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:09,325 DEBUG Processing 402/711 atomic regions from SNP 120320 to 120920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:09,351 DEBUG Processing 631/638 atomic regions from SNP 189183 to 189783 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:09,582 DEBUG Processing 403/711 atomic regions from SNP 120620 to 121220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:09,591 DEBUG Processing 632/638 atomic regions from SNP 189483 to 190083 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:09,832 DEBUG Processing 633/638 atomic regions from SNP 189783 to 190383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:09,839 DEBUG Processing 404/711 atomic regions from SNP 120920 to 121520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:10,077 DEBUG Processing 634/638 atomic regions from SNP 190083 to 190683 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:10,088 DEBUG Processing 405/711 atomic regions from SNP 121220 to 121820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:10,310 DEBUG Processing 635/638 atomic regions from SNP 190383 to 190983 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:10,335 DEBUG Processing 406/711 atomic regions from SNP 121520 to 122120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:10,420 DEBUG Segmenting atomic regions: 2025-01-31 09:50:10,520 DEBUG Processing 1/706 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:10,536 DEBUG Processing 636/638 atomic regions from SNP 190683 to 191283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:10,579 DEBUG Processing 407/711 atomic regions from SNP 121820 to 122420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:10,768 DEBUG Processing 637/638 atomic regions from SNP 190983 to 191583 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:10,780 DEBUG Processing 2/706 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:10,826 DEBUG Processing 408/711 atomic regions from SNP 122120 to 122720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:11,004 DEBUG Processing 638/638 atomic regions from SNP 191283 to 191883 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:11,019 DEBUG Processing 3/706 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:11,074 DEBUG Processing 409/711 atomic regions from SNP 122420 to 123020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:11,157 DEBUG Unique SNPs positions in subchromosome 2: 191884 2025-01-31 09:50:11,259 DEBUG Processing 4/706 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:11,334 DEBUG Processing 410/711 atomic regions from SNP 122720 to 123320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:11,491 DEBUG Processing 5/706 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:11,593 DEBUG Processing 411/711 atomic regions from SNP 123020 to 123620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:11,730 DEBUG Processing 6/706 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:11,837 DEBUG Processing 412/711 atomic regions from SNP 123320 to 123920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:11,979 DEBUG Processing 7/706 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:12,084 DEBUG Processing 413/711 atomic regions from SNP 123620 to 124220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,228 DEBUG Processing 8/706 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:12,330 DEBUG Processing 414/711 atomic regions from SNP 123920 to 124520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,467 DEBUG Processing 9/706 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:12,577 DEBUG Processing 415/711 atomic regions from SNP 124220 to 124820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,700 DEBUG Processing 10/706 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:12,811 DEBUG Processing 416/711 atomic regions from SNP 124520 to 125120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,918 DEBUG Subchromosome time: 176.33529042080045, subchromosome SNPs: 191884 2025-01-31 09:50:12,918 DEBUG Estimated BADs: [0.15, 0.76, 3.05, 0.76, 2.29, 1.52, 0.38, 1.52, 7.62, 0.76, 0.19, 0.38, 0.15, 0.76] SNP counts: [132, 20615, 4010, 14111, 3806, 6011, 12096, 34745, 101, 26273, 22490, 20372, 7239, 20015] SNP IDs counts: [132, 20615, 4010, 14111, 3806, 6011, 12096, 34745, 101, 26273, 22490, 20372, 7239, 20015] Critical gap: 634441bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.10Mbp[0.74Mbp], 19.73Mbp, 21.85Mbp, 29.97Mbp, 31.97Mbp, 35.20Mbp, 45.29Mbp, 65.34Mbp, 65.39Mbp, 80.37Mbp, 95.51Mbp, 107.88Mbp, 112.91Mbp, 124.90Mbp] 2025-01-31 09:50:12,918 DEBUG chr14 time: 176.33578846603632 s 2025-01-31 09:50:12,941 DEBUG Processing 11/706 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:13,049 DEBUG chr14: Fitting background model for 14 segments 2025-01-31 09:50:13,061 DEBUG Processing 417/711 atomic regions from SNP 124820 to 125420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,194 DEBUG Processing 12/706 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:13,311 DEBUG Processing 418/711 atomic regions from SNP 125120 to 125720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,452 DEBUG Processing 13/706 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:13,563 DEBUG Processing 419/711 atomic regions from SNP 125420 to 126020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,694 DEBUG Processing 14/706 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:13,809 DEBUG Processing 420/711 atomic regions from SNP 125720 to 126320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,924 DEBUG Processing 15/706 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:14,056 DEBUG Processing 421/711 atomic regions from SNP 126020 to 126620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,162 DEBUG Processing 16/706 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:14,311 DEBUG Processing 422/711 atomic regions from SNP 126320 to 126920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,394 DEBUG Processing 17/706 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:14,556 DEBUG Processing 423/711 atomic regions from SNP 126620 to 127220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,631 DEBUG Processing 18/706 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:14,799 DEBUG Processing 424/711 atomic regions from SNP 126920 to 127520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,863 DEBUG Processing 19/706 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,041 DEBUG Processing 425/711 atomic regions from SNP 127220 to 127820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,116 DEBUG Processing 20/706 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,282 DEBUG Processing 426/711 atomic regions from SNP 127520 to 128120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,377 DEBUG Processing 21/706 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,526 DEBUG Processing 427/711 atomic regions from SNP 127820 to 128420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,626 DEBUG Processing 22/706 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,761 DEBUG Processing 428/711 atomic regions from SNP 128120 to 128720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,860 DEBUG Processing 23/706 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,002 DEBUG Processing 429/711 atomic regions from SNP 128420 to 129020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,094 DEBUG Processing 24/706 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,244 DEBUG Processing 430/711 atomic regions from SNP 128720 to 129320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,328 DEBUG Processing 25/706 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,478 DEBUG Processing 431/711 atomic regions from SNP 129020 to 129620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,566 DEBUG Processing 26/706 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,715 DEBUG Processing 432/711 atomic regions from SNP 129320 to 129920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,802 DEBUG Processing 27/706 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,963 DEBUG Processing 433/711 atomic regions from SNP 129620 to 130220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,029 DEBUG Processing 28/706 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:17,268 DEBUG Processing 434/711 atomic regions from SNP 129920 to 130520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,291 DEBUG Processing 29/706 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:17,517 DEBUG Processing 435/711 atomic regions from SNP 130220 to 130820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,533 DEBUG Processing 30/706 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:17,762 DEBUG Processing 436/711 atomic regions from SNP 130520 to 131120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,768 DEBUG Processing 31/706 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,011 DEBUG Processing 32/706 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,014 DEBUG Processing 437/711 atomic regions from SNP 130820 to 131420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,257 DEBUG Processing 33/706 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,270 DEBUG Processing 438/711 atomic regions from SNP 131120 to 131720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,502 DEBUG Processing 34/706 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,523 DEBUG Processing 439/711 atomic regions from SNP 131420 to 132020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,783 DEBUG Processing 35/706 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,817 DEBUG Processing 440/711 atomic regions from SNP 131720 to 132320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,023 DEBUG Processing 36/706 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:19,069 DEBUG Processing 441/711 atomic regions from SNP 132020 to 132620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,263 DEBUG Processing 37/706 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:19,324 DEBUG Processing 442/711 atomic regions from SNP 132320 to 132920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,502 DEBUG Processing 38/706 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:19,578 DEBUG Processing 443/711 atomic regions from SNP 132620 to 133220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,734 DEBUG Processing 39/706 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:19,825 DEBUG Processing 444/711 atomic regions from SNP 132920 to 133520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,967 DEBUG Processing 40/706 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:20,023 DEBUG Segmenting atomic regions: 2025-01-31 09:50:20,072 DEBUG Processing 445/711 atomic regions from SNP 133220 to 133820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,114 DEBUG Processing 1/669 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:20,197 DEBUG Processing 41/706 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:20,313 DEBUG Processing 446/711 atomic regions from SNP 133520 to 134120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,339 DEBUG Processing 2/669 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:20,428 DEBUG Processing 42/706 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:20,551 DEBUG Processing 447/711 atomic regions from SNP 133820 to 134420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,570 DEBUG Processing 3/669 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:20,661 DEBUG Processing 43/706 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:20,788 DEBUG Processing 448/711 atomic regions from SNP 134120 to 134720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,800 DEBUG Processing 4/669 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:20,895 DEBUG Processing 44/706 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,026 DEBUG Processing 449/711 atomic regions from SNP 134420 to 135020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,028 DEBUG Processing 5/669 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,128 DEBUG Processing 45/706 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,249 DEBUG Processing 6/669 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,261 DEBUG Processing 450/711 atomic regions from SNP 134720 to 135320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,361 DEBUG Processing 46/706 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,478 DEBUG Processing 7/669 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,496 DEBUG Processing 451/711 atomic regions from SNP 135020 to 135620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,594 DEBUG Processing 47/706 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,689 DEBUG Processing 8/669 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,732 DEBUG Processing 452/711 atomic regions from SNP 135320 to 135920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,825 DEBUG Processing 48/706 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,905 DEBUG Processing 9/669 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,974 DEBUG Processing 453/711 atomic regions from SNP 135620 to 136220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,056 DEBUG Processing 49/706 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:22,130 DEBUG Processing 10/669 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,212 DEBUG Processing 454/711 atomic regions from SNP 135920 to 136520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,286 DEBUG Processing 50/706 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:22,352 DEBUG Processing 11/669 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,451 DEBUG Processing 455/711 atomic regions from SNP 136220 to 136820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,514 DEBUG Processing 51/706 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:22,577 DEBUG Processing 12/669 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,689 DEBUG Processing 456/711 atomic regions from SNP 136520 to 137120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,743 DEBUG Processing 52/706 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:22,798 DEBUG Segmenting atomic regions: 2025-01-31 09:50:22,801 DEBUG Processing 13/669 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,886 DEBUG Processing 1/639 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:22,933 DEBUG Processing 457/711 atomic regions from SNP 136820 to 137420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,974 DEBUG Processing 53/706 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,019 DEBUG Processing 14/669 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:23,109 DEBUG Processing 2/639 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,178 DEBUG Processing 458/711 atomic regions from SNP 137120 to 137720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,208 DEBUG Processing 54/706 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,242 DEBUG Processing 15/669 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:23,332 DEBUG Processing 3/639 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,425 DEBUG Processing 459/711 atomic regions from SNP 137420 to 138020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,447 DEBUG Processing 55/706 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,468 DEBUG Processing 16/669 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:23,547 DEBUG Processing 4/639 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,672 DEBUG Processing 460/711 atomic regions from SNP 137720 to 138320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,686 DEBUG Processing 56/706 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,705 DEBUG Processing 17/669 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:23,775 DEBUG Processing 5/639 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,921 DEBUG Processing 461/711 atomic regions from SNP 138020 to 138620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,926 DEBUG Processing 57/706 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,940 DEBUG Processing 18/669 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,006 DEBUG Processing 6/639 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,162 DEBUG Processing 58/706 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,164 DEBUG Processing 462/711 atomic regions from SNP 138320 to 138920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,170 DEBUG Processing 19/669 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,247 DEBUG Processing 7/639 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,394 DEBUG Processing 20/669 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,397 DEBUG Processing 59/706 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,405 DEBUG Processing 463/711 atomic regions from SNP 138620 to 139220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,482 DEBUG Processing 8/639 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,621 DEBUG Processing 21/669 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,632 DEBUG Processing 60/706 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,646 DEBUG Processing 464/711 atomic regions from SNP 138920 to 139520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,711 DEBUG Processing 9/639 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,854 DEBUG Processing 22/669 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,873 DEBUG Processing 61/706 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,897 DEBUG Processing 465/711 atomic regions from SNP 139220 to 139820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,948 DEBUG Processing 10/639 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:25,089 DEBUG Processing 23/669 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,120 DEBUG Processing 62/706 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:25,146 DEBUG Processing 466/711 atomic regions from SNP 139520 to 140120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,187 DEBUG Processing 11/639 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:25,325 DEBUG Processing 24/669 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,382 DEBUG Processing 63/706 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:25,412 DEBUG Processing 467/711 atomic regions from SNP 139820 to 140420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,450 DEBUG Processing 12/639 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:25,551 DEBUG Processing 25/669 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,622 DEBUG Processing 64/706 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:25,658 DEBUG Processing 468/711 atomic regions from SNP 140120 to 140720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,678 DEBUG Processing 13/639 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:25,777 DEBUG Processing 26/669 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,860 DEBUG Processing 65/706 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:25,906 DEBUG Processing 469/711 atomic regions from SNP 140420 to 141020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,911 DEBUG Processing 14/639 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,009 DEBUG Processing 27/669 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:26,110 DEBUG Processing 66/706 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:26,126 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:50:26,149 DEBUG Processing 15/639 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,159 DEBUG Processing 470/711 atomic regions from SNP 140720 to 141320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,240 DEBUG Processing 28/669 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:26,367 DEBUG Processing 67/706 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:26,392 DEBUG Processing 16/639 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,417 DEBUG Processing 471/711 atomic regions from SNP 141020 to 141620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,478 DEBUG Processing 29/669 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:26,623 DEBUG Processing 68/706 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:26,645 DEBUG Processing 17/639 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,680 DEBUG Processing 472/711 atomic regions from SNP 141320 to 141920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,741 DEBUG Processing 30/669 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:26,876 DEBUG Processing 69/706 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:26,892 DEBUG Processing 18/639 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,935 DEBUG Processing 473/711 atomic regions from SNP 141620 to 142220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,961 DEBUG Processing 31/669 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,120 DEBUG Processing 70/706 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:27,130 DEBUG Processing 19/639 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:27,188 DEBUG Processing 32/669 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,190 DEBUG Processing 474/711 atomic regions from SNP 141920 to 142520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,369 DEBUG Processing 71/706 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:27,371 DEBUG Processing 20/639 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:27,437 DEBUG Processing 33/669 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,442 DEBUG Processing 475/711 atomic regions from SNP 142220 to 142820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,605 DEBUG Processing 21/639 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:27,610 DEBUG Processing 72/706 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:27,692 DEBUG Processing 476/711 atomic regions from SNP 142520 to 143120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,700 DEBUG Processing 34/669 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,835 DEBUG Processing 22/639 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:27,851 DEBUG Processing 73/706 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:27,944 DEBUG Processing 477/711 atomic regions from SNP 142820 to 143420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,952 DEBUG Processing 35/669 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:28,064 DEBUG Processing 23/639 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:28,087 DEBUG Processing 74/706 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:28,189 DEBUG Processing 36/669 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:28,193 DEBUG Processing 478/711 atomic regions from SNP 143120 to 143720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,273 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:50:28,292 DEBUG Processing 24/639 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:28,320 DEBUG Processing 75/706 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:28,434 DEBUG Processing 37/669 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:28,446 DEBUG Processing 479/711 atomic regions from SNP 143420 to 144020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,534 DEBUG Processing 25/639 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:28,566 DEBUG Processing 76/706 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:28,683 DEBUG Processing 38/669 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:28,721 DEBUG Processing 480/711 atomic regions from SNP 143720 to 144320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,846 DEBUG Processing 26/639 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:28,874 DEBUG Processing 77/706 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:28,958 DEBUG Processing 39/669 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:28,990 DEBUG Processing 481/711 atomic regions from SNP 144020 to 144620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,115 DEBUG Processing 27/639 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,144 DEBUG Processing 78/706 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:29,242 DEBUG Processing 40/669 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:29,274 DEBUG Processing 482/711 atomic regions from SNP 144320 to 144920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,420 DEBUG Processing 28/639 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,467 DEBUG Processing 79/706 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:29,588 DEBUG Processing 41/669 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:29,630 DEBUG Processing 483/711 atomic regions from SNP 144620 to 145220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,687 DEBUG Processing 29/639 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,731 DEBUG Processing 80/706 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:29,826 DEBUG Processing 42/669 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:29,886 DEBUG Processing 484/711 atomic regions from SNP 144920 to 145520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,934 DEBUG Processing 30/639 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,984 DEBUG Processing 81/706 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,058 DEBUG Processing 43/669 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,129 DEBUG Processing 485/711 atomic regions from SNP 145220 to 145820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,166 DEBUG Processing 31/639 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:30,224 DEBUG Processing 82/706 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,286 DEBUG Processing 44/669 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,373 DEBUG Processing 486/711 atomic regions from SNP 145520 to 146120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,395 DEBUG Processing 32/639 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:30,469 DEBUG Processing 83/706 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,520 DEBUG Processing 45/669 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,617 DEBUG Processing 487/711 atomic regions from SNP 145820 to 146420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,625 DEBUG Processing 33/639 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:30,713 DEBUG Processing 84/706 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,761 DEBUG Processing 46/669 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,858 DEBUG Processing 34/639 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:30,866 DEBUG Processing 488/711 atomic regions from SNP 146120 to 146720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,949 DEBUG Processing 85/706 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:31,001 DEBUG Processing 47/669 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:31,121 DEBUG Processing 35/639 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,160 DEBUG Processing 489/711 atomic regions from SNP 146420 to 147020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,244 DEBUG Processing 86/706 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:31,296 DEBUG Processing 48/669 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:31,387 DEBUG Processing 36/639 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,425 DEBUG Processing 490/711 atomic regions from SNP 146720 to 147320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,485 DEBUG Processing 87/706 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:31,543 DEBUG Processing 49/669 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:31,628 DEBUG Processing 37/639 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,686 DEBUG Processing 491/711 atomic regions from SNP 147020 to 147620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,725 DEBUG Processing 88/706 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:31,783 DEBUG Processing 50/669 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:31,861 DEBUG Processing 38/639 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,932 DEBUG Processing 492/711 atomic regions from SNP 147320 to 147920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,962 DEBUG Processing 89/706 atomic regions from SNP 26488 to 27088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:32,012 DEBUG Processing 51/669 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:32,093 DEBUG Processing 39/639 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:32,190 DEBUG Processing 493/711 atomic regions from SNP 147620 to 148220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,204 DEBUG Processing 90/706 atomic regions from SNP 26788 to 27388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:32,246 DEBUG Processing 52/669 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:32,320 DEBUG Processing 40/639 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:32,438 DEBUG Processing 494/711 atomic regions from SNP 147920 to 148520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,447 DEBUG Processing 91/706 atomic regions from SNP 27088 to 27688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:32,491 DEBUG Processing 53/669 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:32,546 DEBUG Processing 41/639 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:32,686 DEBUG Processing 495/711 atomic regions from SNP 148220 to 148820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,689 DEBUG Processing 92/706 atomic regions from SNP 27388 to 27988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:32,727 DEBUG Processing 54/669 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:32,773 DEBUG Processing 42/639 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:32,936 DEBUG Processing 93/706 atomic regions from SNP 27688 to 28288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:32,938 DEBUG Processing 496/711 atomic regions from SNP 148520 to 149120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,966 DEBUG Processing 55/669 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:33,008 DEBUG Processing 43/639 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,178 DEBUG Processing 94/706 atomic regions from SNP 27988 to 28588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:33,199 DEBUG Processing 497/711 atomic regions from SNP 148820 to 149420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:33,201 DEBUG Processing 56/669 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:33,235 DEBUG Processing 44/639 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,421 DEBUG Processing 95/706 atomic regions from SNP 28288 to 28888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:33,434 DEBUG Processing 57/669 atomic regions from SNP 16856 to 17456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:33,444 DEBUG Processing 498/711 atomic regions from SNP 149120 to 149720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:33,465 DEBUG Processing 45/639 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,660 DEBUG Processing 96/706 atomic regions from SNP 28588 to 29188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:33,674 DEBUG Processing 58/669 atomic regions from SNP 17156 to 17756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:33,686 DEBUG Processing 499/711 atomic regions from SNP 149420 to 150020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:33,690 DEBUG Processing 46/639 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,899 DEBUG Processing 97/706 atomic regions from SNP 28888 to 29488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:33,908 DEBUG Processing 59/669 atomic regions from SNP 17456 to 18056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:33,914 DEBUG Processing 47/639 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,927 DEBUG Processing 500/711 atomic regions from SNP 149720 to 150320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:34,139 DEBUG Processing 48/639 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:34,140 DEBUG Processing 60/669 atomic regions from SNP 17756 to 18356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:34,145 DEBUG Processing 98/706 atomic regions from SNP 29188 to 29788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:34,166 DEBUG Processing 501/711 atomic regions from SNP 150020 to 150620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:34,364 DEBUG Processing 61/669 atomic regions from SNP 18056 to 18656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:34,365 DEBUG Processing 49/639 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:34,386 DEBUG Processing 99/706 atomic regions from SNP 29488 to 30088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:34,412 DEBUG Processing 502/711 atomic regions from SNP 150320 to 150920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:34,588 DEBUG Processing 62/669 atomic regions from SNP 18356 to 18956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:34,595 DEBUG Processing 50/639 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:34,629 DEBUG Processing 100/706 atomic regions from SNP 29788 to 30388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:34,666 DEBUG Processing 503/711 atomic regions from SNP 150620 to 151220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:34,821 DEBUG Processing 63/669 atomic regions from SNP 18656 to 19256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:34,824 DEBUG Processing 51/639 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:34,882 DEBUG Processing 101/706 atomic regions from SNP 30088 to 30688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:34,922 DEBUG Processing 504/711 atomic regions from SNP 150920 to 151520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,051 DEBUG Processing 52/639 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,057 DEBUG Processing 64/669 atomic regions from SNP 18956 to 19556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:35,123 DEBUG Processing 102/706 atomic regions from SNP 30388 to 30988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:35,168 DEBUG Processing 505/711 atomic regions from SNP 151220 to 151820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,270 DEBUG Processing 53/639 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,290 DEBUG Processing 65/669 atomic regions from SNP 19256 to 19856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:35,361 DEBUG Processing 103/706 atomic regions from SNP 30688 to 31288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:35,410 DEBUG Processing 506/711 atomic regions from SNP 151520 to 152120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,484 DEBUG Processing 54/639 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,521 DEBUG Processing 66/669 atomic regions from SNP 19556 to 20156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:35,593 DEBUG Processing 104/706 atomic regions from SNP 30988 to 31588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:35,651 DEBUG Processing 507/711 atomic regions from SNP 151820 to 152420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,700 DEBUG Processing 55/639 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,749 DEBUG Processing 67/669 atomic regions from SNP 19856 to 20456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:35,818 DEBUG Processing 105/706 atomic regions from SNP 31288 to 31888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:35,880 DEBUG Processing 508/711 atomic regions from SNP 152120 to 152720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,909 DEBUG Processing 56/639 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,970 DEBUG Processing 68/669 atomic regions from SNP 20156 to 20756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,038 DEBUG Processing 106/706 atomic regions from SNP 31588 to 32188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:36,105 DEBUG Processing 509/711 atomic regions from SNP 152420 to 153020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:36,116 DEBUG Processing 57/639 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,196 DEBUG Processing 69/669 atomic regions from SNP 20456 to 21056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,270 DEBUG Processing 107/706 atomic regions from SNP 31888 to 32488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:36,346 DEBUG Processing 510/711 atomic regions from SNP 152720 to 153320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:36,346 DEBUG Processing 58/639 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,417 DEBUG Processing 70/669 atomic regions from SNP 20756 to 21356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,486 DEBUG Processing 108/706 atomic regions from SNP 32188 to 32788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:36,556 DEBUG Processing 59/639 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,573 DEBUG Processing 511/711 atomic regions from SNP 153020 to 153620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:36,641 DEBUG Processing 71/669 atomic regions from SNP 21056 to 21656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,709 DEBUG Processing 109/706 atomic regions from SNP 32488 to 33088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:36,766 DEBUG Processing 60/639 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,802 DEBUG Processing 512/711 atomic regions from SNP 153320 to 153920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:36,864 DEBUG Processing 72/669 atomic regions from SNP 21356 to 21956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,934 DEBUG Processing 110/706 atomic regions from SNP 32788 to 33388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:36,979 DEBUG Processing 61/639 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,033 DEBUG Processing 513/711 atomic regions from SNP 153620 to 154220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,088 DEBUG Processing 73/669 atomic regions from SNP 21656 to 22256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:37,165 DEBUG Processing 111/706 atomic regions from SNP 33088 to 33688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,205 DEBUG Processing 62/639 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,275 DEBUG Processing 514/711 atomic regions from SNP 153920 to 154520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,323 DEBUG Processing 74/669 atomic regions from SNP 21956 to 22556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:37,404 DEBUG Processing 112/706 atomic regions from SNP 33388 to 33988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,440 DEBUG Processing 63/639 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,523 DEBUG Processing 515/711 atomic regions from SNP 154220 to 154820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,555 DEBUG Processing 75/669 atomic regions from SNP 22256 to 22856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:37,653 DEBUG Processing 113/706 atomic regions from SNP 33688 to 34288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,665 DEBUG Processing 64/639 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,773 DEBUG Processing 516/711 atomic regions from SNP 154520 to 155120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,803 DEBUG Processing 76/669 atomic regions from SNP 22556 to 23156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:37,897 DEBUG Processing 114/706 atomic regions from SNP 33988 to 34588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,900 DEBUG Processing 65/639 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,025 DEBUG Processing 517/711 atomic regions from SNP 154820 to 155420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,087 DEBUG Processing 77/669 atomic regions from SNP 22856 to 23456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:38,176 DEBUG Processing 66/639 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,189 DEBUG Processing 115/706 atomic regions from SNP 34288 to 34888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:38,266 DEBUG Processing 518/711 atomic regions from SNP 155120 to 155720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,312 DEBUG Processing 78/669 atomic regions from SNP 23156 to 23756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:38,396 DEBUG Processing 67/639 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,424 DEBUG Processing 116/706 atomic regions from SNP 34588 to 35188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:38,518 DEBUG Processing 519/711 atomic regions from SNP 155420 to 156020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,577 DEBUG Processing 79/669 atomic regions from SNP 23456 to 24056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:38,629 DEBUG Processing 68/639 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,632 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:50:38,634 DEBUG chr15: Signal quantile: 0.991. signal threshold: 10. Best RMSEA: 0.017 2025-01-31 09:50:38,671 DEBUG Processing 117/706 atomic regions from SNP 34888 to 35488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:38,755 DEBUG Processing 520/711 atomic regions from SNP 155720 to 156320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,793 DEBUG Processing 80/669 atomic regions from SNP 23756 to 24356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:38,855 DEBUG Processing 69/639 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,917 DEBUG Processing 118/706 atomic regions from SNP 35188 to 35788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:38,998 DEBUG Processing 521/711 atomic regions from SNP 156020 to 156620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,013 DEBUG Processing 81/669 atomic regions from SNP 24056 to 24656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:39,097 DEBUG Processing 70/639 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:39,221 DEBUG Processing 119/706 atomic regions from SNP 35488 to 36088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:39,269 DEBUG Processing 82/669 atomic regions from SNP 24356 to 24956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:39,269 DEBUG Processing 522/711 atomic regions from SNP 156320 to 156920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,308 DEBUG Processing 71/639 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:39,446 DEBUG Processing 120/706 atomic regions from SNP 35788 to 36388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:39,527 DEBUG Processing 83/669 atomic regions from SNP 24656 to 25256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:39,548 DEBUG Processing 523/711 atomic regions from SNP 156620 to 157220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,581 DEBUG Processing 72/639 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:39,742 DEBUG Processing 121/706 atomic regions from SNP 36088 to 36688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:39,820 DEBUG Processing 84/669 atomic regions from SNP 24956 to 25556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:39,862 DEBUG Processing 524/711 atomic regions from SNP 156920 to 157520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,900 DEBUG Processing 73/639 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:39,974 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:50:39,976 DEBUG chr16: Signal quantile: 0.995. signal threshold: 10. Best RMSEA: 0.022 2025-01-31 09:50:40,095 DEBUG Processing 122/706 atomic regions from SNP 36388 to 36988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:40,102 DEBUG Processing 85/669 atomic regions from SNP 25256 to 25856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:40,139 DEBUG Processing 525/711 atomic regions from SNP 157220 to 157820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,143 DEBUG Processing 74/639 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,331 DEBUG Processing 86/669 atomic regions from SNP 25556 to 26156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:40,343 DEBUG Processing 123/706 atomic regions from SNP 36688 to 37288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:40,376 DEBUG Processing 75/639 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,391 DEBUG Processing 526/711 atomic regions from SNP 157520 to 158120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,556 DEBUG Processing 87/669 atomic regions from SNP 25856 to 26456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:40,581 DEBUG Processing 124/706 atomic regions from SNP 36988 to 37588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:40,604 DEBUG Processing 76/639 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,635 DEBUG Processing 527/711 atomic regions from SNP 157820 to 158420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,846 DEBUG Processing 88/669 atomic regions from SNP 26156 to 26756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:40,904 DEBUG Processing 77/639 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,915 DEBUG Processing 125/706 atomic regions from SNP 37288 to 37888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:40,959 DEBUG Processing 528/711 atomic regions from SNP 158120 to 158720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,138 DEBUG Processing 89/669 atomic regions from SNP 26456 to 27056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:41,232 DEBUG Processing 78/639 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:41,281 DEBUG Processing 126/706 atomic regions from SNP 37588 to 38188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:41,327 DEBUG Processing 529/711 atomic regions from SNP 158420 to 159020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,327 DEBUG chr15 total SNP count: 177193 2025-01-31 09:50:41,327 DEBUG chr15 length: 104043685 2025-01-31 09:50:41,327 DEBUG ----------------------------------------- 2025-01-31 09:50:41,328 INFO Processing SNPs in chr15 2025-01-31 09:50:41,415 DEBUG Processing 90/669 atomic regions from SNP 26756 to 27356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:41,477 DEBUG Processing 79/639 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:41,513 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 177193)] 2025-01-31 09:50:41,527 DEBUG Processing 127/706 atomic regions from SNP 37888 to 38488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:41,573 DEBUG Processing 530/711 atomic regions from SNP 158720 to 159320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,641 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:41,747 DEBUG Processing 91/669 atomic regions from SNP 27056 to 27656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:41,797 DEBUG Processing 80/639 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:41,818 DEBUG Processing 128/706 atomic regions from SNP 38188 to 38788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:41,855 DEBUG Processing 531/711 atomic regions from SNP 159020 to 159620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,087 DEBUG Processing 92/669 atomic regions from SNP 27356 to 27956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:42,170 DEBUG Processing 81/639 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:42,189 DEBUG Processing 129/706 atomic regions from SNP 38488 to 39088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:42,216 DEBUG Processing 532/711 atomic regions from SNP 159320 to 159920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,361 DEBUG Processing 93/669 atomic regions from SNP 27656 to 28256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:42,472 DEBUG Processing 82/639 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:42,506 DEBUG Processing 130/706 atomic regions from SNP 38788 to 39388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:42,545 DEBUG Processing 533/711 atomic regions from SNP 159620 to 160220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,568 DEBUG chr16 total SNP count: 163679 2025-01-31 09:50:42,568 DEBUG chr16 length: 98207768 2025-01-31 09:50:42,568 DEBUG ----------------------------------------- 2025-01-31 09:50:42,569 INFO Processing SNPs in chr16 2025-01-31 09:50:42,600 DEBUG Processing 94/669 atomic regions from SNP 27956 to 28556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:42,714 DEBUG Processing 83/639 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:42,745 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 163679)] 2025-01-31 09:50:42,772 DEBUG Processing 131/706 atomic regions from SNP 39088 to 39688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:42,827 DEBUG Processing 534/711 atomic regions from SNP 159920 to 160520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,850 DEBUG Processing 95/669 atomic regions from SNP 28256 to 28856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:42,860 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:42,988 DEBUG Processing 84/639 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,047 DEBUG Processing 132/706 atomic regions from SNP 39388 to 39988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:43,148 DEBUG Processing 96/669 atomic regions from SNP 28556 to 29156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:43,150 DEBUG Processing 535/711 atomic regions from SNP 160220 to 160820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,296 DEBUG Processing 85/639 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,360 DEBUG Processing 133/706 atomic regions from SNP 39688 to 40288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:43,415 DEBUG Processing 97/669 atomic regions from SNP 28856 to 29456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:43,426 DEBUG Processing 536/711 atomic regions from SNP 160520 to 161120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,523 DEBUG Processing 86/639 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,590 DEBUG Processing 134/706 atomic regions from SNP 39988 to 40588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:43,635 DEBUG Processing 98/669 atomic regions from SNP 29156 to 29756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:43,670 DEBUG Processing 537/711 atomic regions from SNP 160820 to 161420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,739 DEBUG Processing 87/639 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,819 DEBUG Processing 135/706 atomic regions from SNP 40288 to 40888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:43,848 DEBUG Processing 99/669 atomic regions from SNP 29456 to 30056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:43,906 DEBUG Processing 538/711 atomic regions from SNP 161120 to 161720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,962 DEBUG Processing 88/639 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:44,094 DEBUG Processing 136/706 atomic regions from SNP 40588 to 41188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:44,119 DEBUG Processing 100/669 atomic regions from SNP 29756 to 30356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:44,194 DEBUG Processing 539/711 atomic regions from SNP 161420 to 162020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,206 DEBUG Processing 89/639 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:44,347 DEBUG Processing 137/706 atomic regions from SNP 40888 to 41488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:44,390 DEBUG Processing 101/669 atomic regions from SNP 30056 to 30656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:44,473 DEBUG Processing 90/639 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:44,482 DEBUG Processing 540/711 atomic regions from SNP 161720 to 162320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,576 DEBUG Processing 138/706 atomic regions from SNP 41188 to 41788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:44,643 DEBUG Processing 102/669 atomic regions from SNP 30356 to 30956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:44,731 DEBUG Processing 91/639 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:44,771 DEBUG Processing 541/711 atomic regions from SNP 162020 to 162620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,867 DEBUG Processing 139/706 atomic regions from SNP 41488 to 42088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:44,951 DEBUG Processing 103/669 atomic regions from SNP 30656 to 31256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:44,984 DEBUG Processing 92/639 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,064 DEBUG Processing 542/711 atomic regions from SNP 162320 to 162920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,130 DEBUG Processing 140/706 atomic regions from SNP 41788 to 42388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:45,204 DEBUG Processing 104/669 atomic regions from SNP 30956 to 31556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:45,206 DEBUG Processing 93/639 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,308 DEBUG Processing 543/711 atomic regions from SNP 162620 to 163220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,372 DEBUG Processing 141/706 atomic regions from SNP 42088 to 42688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:45,419 DEBUG Processing 94/639 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,454 DEBUG Processing 105/669 atomic regions from SNP 31256 to 31856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:45,528 DEBUG Processing 544/711 atomic regions from SNP 162920 to 163520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,601 DEBUG Processing 142/706 atomic regions from SNP 42388 to 42988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:45,633 DEBUG Processing 95/639 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,716 DEBUG Processing 106/669 atomic regions from SNP 31556 to 32156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:45,756 DEBUG Processing 545/711 atomic regions from SNP 163220 to 163820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,828 DEBUG Processing 143/706 atomic regions from SNP 42688 to 43288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:45,848 DEBUG Processing 96/639 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,969 DEBUG Processing 107/669 atomic regions from SNP 31856 to 32456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:45,973 DEBUG Processing 546/711 atomic regions from SNP 163520 to 164120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,054 DEBUG Processing 144/706 atomic regions from SNP 42988 to 43588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:46,062 DEBUG Processing 97/639 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,182 DEBUG Processing 108/669 atomic regions from SNP 32156 to 32756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:46,193 DEBUG Processing 547/711 atomic regions from SNP 163820 to 164420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,267 DEBUG Processing 98/639 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,274 DEBUG Processing 145/706 atomic regions from SNP 43288 to 43888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:46,398 DEBUG Processing 109/669 atomic regions from SNP 32456 to 33056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:46,421 DEBUG Processing 548/711 atomic regions from SNP 164120 to 164720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,495 DEBUG Processing 146/706 atomic regions from SNP 43588 to 44188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:46,503 DEBUG Processing 99/639 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,613 DEBUG Processing 110/669 atomic regions from SNP 32756 to 33356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:46,644 DEBUG Processing 549/711 atomic regions from SNP 164420 to 165020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,721 DEBUG Processing 147/706 atomic regions from SNP 43888 to 44488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:46,727 DEBUG Processing 100/639 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,831 DEBUG Processing 111/669 atomic regions from SNP 33056 to 33656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:46,871 DEBUG Processing 550/711 atomic regions from SNP 164720 to 165320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,942 DEBUG Processing 101/639 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,946 DEBUG Processing 148/706 atomic regions from SNP 44188 to 44788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:47,041 DEBUG Processing 112/669 atomic regions from SNP 33356 to 33956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:47,092 DEBUG Processing 551/711 atomic regions from SNP 165020 to 165620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,157 DEBUG Processing 102/639 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,171 DEBUG Processing 149/706 atomic regions from SNP 44488 to 45088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:47,274 DEBUG Processing 113/669 atomic regions from SNP 33656 to 34256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:47,319 DEBUG Processing 552/711 atomic regions from SNP 165320 to 165920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,374 DEBUG Processing 103/639 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,401 DEBUG Processing 150/706 atomic regions from SNP 44788 to 45388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:47,524 DEBUG Processing 114/669 atomic regions from SNP 33956 to 34556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:47,551 DEBUG Processing 553/711 atomic regions from SNP 165620 to 166220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,586 DEBUG Processing 104/639 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,624 DEBUG Processing 151/706 atomic regions from SNP 45088 to 45688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:47,774 DEBUG Processing 115/669 atomic regions from SNP 34256 to 34856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:47,782 DEBUG Processing 554/711 atomic regions from SNP 165920 to 166520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,802 DEBUG Processing 105/639 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,854 DEBUG Processing 152/706 atomic regions from SNP 45388 to 45988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,022 DEBUG Processing 116/669 atomic regions from SNP 34556 to 35156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:48,024 DEBUG Processing 555/711 atomic regions from SNP 166220 to 166820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,031 DEBUG Processing 106/639 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,084 DEBUG Processing 153/706 atomic regions from SNP 45688 to 46288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,230 DEBUG Processing 117/669 atomic regions from SNP 34856 to 35456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:48,256 DEBUG Processing 107/639 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,264 DEBUG Processing 556/711 atomic regions from SNP 166520 to 167120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,318 DEBUG Processing 154/706 atomic regions from SNP 45988 to 46588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,445 DEBUG Processing 118/669 atomic regions from SNP 35156 to 35756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:48,474 DEBUG Processing 108/639 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,501 DEBUG Processing 557/711 atomic regions from SNP 166820 to 167420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,549 DEBUG Processing 155/706 atomic regions from SNP 46288 to 46888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,667 DEBUG Processing 119/669 atomic regions from SNP 35456 to 36056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:48,685 DEBUG Processing 109/639 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,733 DEBUG Processing 558/711 atomic regions from SNP 167120 to 167720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,778 DEBUG Processing 156/706 atomic regions from SNP 46588 to 47188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,891 DEBUG Processing 120/669 atomic regions from SNP 35756 to 36356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:48,898 DEBUG Processing 110/639 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,964 DEBUG Processing 559/711 atomic regions from SNP 167420 to 168020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,001 DEBUG Processing 157/706 atomic regions from SNP 46888 to 47488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:49,106 DEBUG Processing 111/639 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:49,123 DEBUG Processing 121/669 atomic regions from SNP 36056 to 36656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,195 DEBUG Processing 560/711 atomic regions from SNP 167720 to 168320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,226 DEBUG Processing 158/706 atomic regions from SNP 47188 to 47788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:49,322 DEBUG Processing 112/639 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:49,355 DEBUG Processing 122/669 atomic regions from SNP 36356 to 36956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,440 DEBUG Processing 561/711 atomic regions from SNP 168020 to 168620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,451 DEBUG Processing 159/706 atomic regions from SNP 47488 to 48088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:49,533 DEBUG Processing 113/639 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:49,585 DEBUG Processing 123/669 atomic regions from SNP 36656 to 37256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,671 DEBUG Processing 562/711 atomic regions from SNP 168320 to 168920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,676 DEBUG Processing 160/706 atomic regions from SNP 47788 to 48388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:49,745 DEBUG Processing 114/639 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:49,806 DEBUG Processing 124/669 atomic regions from SNP 36956 to 37556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,903 DEBUG Processing 563/711 atomic regions from SNP 168620 to 169220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,906 DEBUG Processing 161/706 atomic regions from SNP 48088 to 48688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:49,967 DEBUG Processing 115/639 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,022 DEBUG Processing 125/669 atomic regions from SNP 37256 to 37856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:50,137 DEBUG Processing 564/711 atomic regions from SNP 168920 to 169520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,144 DEBUG Processing 162/706 atomic regions from SNP 48388 to 48988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:50,185 DEBUG Processing 116/639 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,234 DEBUG Processing 126/669 atomic regions from SNP 37556 to 38156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:50,368 DEBUG Processing 565/711 atomic regions from SNP 169220 to 169820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,371 DEBUG Processing 163/706 atomic regions from SNP 48688 to 49288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:50,406 DEBUG Processing 117/639 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,446 DEBUG Processing 127/669 atomic regions from SNP 37856 to 38456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:50,604 DEBUG Processing 566/711 atomic regions from SNP 169520 to 170120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,605 DEBUG Processing 164/706 atomic regions from SNP 48988 to 49588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:50,627 DEBUG Processing 118/639 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,657 DEBUG Processing 128/669 atomic regions from SNP 38156 to 38756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:50,833 DEBUG Processing 567/711 atomic regions from SNP 169820 to 170420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,844 DEBUG Processing 119/639 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,857 DEBUG Processing 165/706 atomic regions from SNP 49288 to 49888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:50,870 DEBUG Processing 129/669 atomic regions from SNP 38456 to 39056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:51,064 DEBUG Processing 120/639 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,067 DEBUG Processing 568/711 atomic regions from SNP 170120 to 170720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,092 DEBUG Processing 130/669 atomic regions from SNP 38756 to 39356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:51,096 DEBUG Processing 166/706 atomic regions from SNP 49588 to 50188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,296 DEBUG Processing 121/639 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,327 DEBUG Processing 569/711 atomic regions from SNP 170420 to 171020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,335 DEBUG Processing 131/669 atomic regions from SNP 39056 to 39656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:51,343 DEBUG Processing 167/706 atomic regions from SNP 49888 to 50488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,511 DEBUG Processing 122/639 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,563 DEBUG Processing 132/669 atomic regions from SNP 39356 to 39956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:51,565 DEBUG Processing 570/711 atomic regions from SNP 170720 to 171320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,575 DEBUG Processing 168/706 atomic regions from SNP 50188 to 50788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,723 DEBUG Processing 123/639 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,793 DEBUG Processing 133/669 atomic regions from SNP 39656 to 40256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:51,808 DEBUG Processing 169/706 atomic regions from SNP 50488 to 51088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,815 DEBUG Processing 571/711 atomic regions from SNP 171020 to 171620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,944 DEBUG Processing 124/639 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:52,010 DEBUG Processing 134/669 atomic regions from SNP 39956 to 40556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,034 DEBUG Processing 170/706 atomic regions from SNP 50788 to 51388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:52,078 DEBUG Processing 572/711 atomic regions from SNP 171320 to 171920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:52,158 DEBUG Processing 125/639 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:52,214 DEBUG Processing 135/669 atomic regions from SNP 40256 to 40856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,258 DEBUG Processing 171/706 atomic regions from SNP 51088 to 51688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:52,311 DEBUG Processing 573/711 atomic regions from SNP 171620 to 172220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:52,381 DEBUG Processing 126/639 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:52,437 DEBUG Processing 136/669 atomic regions from SNP 40556 to 41156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,489 DEBUG Processing 172/706 atomic regions from SNP 51388 to 51988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:52,544 DEBUG Processing 574/711 atomic regions from SNP 171920 to 172520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:52,633 DEBUG Processing 127/639 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:52,730 DEBUG Processing 137/669 atomic regions from SNP 40856 to 41456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,829 DEBUG Processing 173/706 atomic regions from SNP 51688 to 52288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:52,875 DEBUG Processing 575/711 atomic regions from SNP 172220 to 172820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:52,950 DEBUG Processing 128/639 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:53,062 DEBUG Processing 138/669 atomic regions from SNP 41156 to 41756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:53,184 DEBUG Processing 174/706 atomic regions from SNP 51988 to 52588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:53,202 DEBUG Processing 576/711 atomic regions from SNP 172520 to 173120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:53,211 DEBUG Processing 129/639 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:53,333 DEBUG Processing 139/669 atomic regions from SNP 41456 to 42056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:53,517 DEBUG Processing 175/706 atomic regions from SNP 52288 to 52888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:53,554 DEBUG Processing 577/711 atomic regions from SNP 172820 to 173420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:53,569 DEBUG Processing 130/639 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:53,621 DEBUG Processing 140/669 atomic regions from SNP 41756 to 42356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:53,740 DEBUG Processing 176/706 atomic regions from SNP 52588 to 53188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:53,789 DEBUG Processing 578/711 atomic regions from SNP 173120 to 173720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:53,794 DEBUG Processing 131/639 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:53,855 DEBUG Processing 141/669 atomic regions from SNP 42056 to 42656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:53,968 DEBUG Processing 177/706 atomic regions from SNP 52888 to 53488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:54,003 DEBUG Processing 132/639 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,019 DEBUG Processing 579/711 atomic regions from SNP 173420 to 174020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:54,073 DEBUG Processing 142/669 atomic regions from SNP 42356 to 42956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:54,203 DEBUG Processing 178/706 atomic regions from SNP 53188 to 53788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:54,217 DEBUG Processing 133/639 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,243 DEBUG Processing 580/711 atomic regions from SNP 173720 to 174320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:54,282 DEBUG Processing 143/669 atomic regions from SNP 42656 to 43256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:54,429 DEBUG Processing 134/639 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,431 DEBUG Processing 179/706 atomic regions from SNP 53488 to 54088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:54,470 DEBUG Processing 581/711 atomic regions from SNP 174020 to 174620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:54,497 DEBUG Processing 144/669 atomic regions from SNP 42956 to 43556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:54,646 DEBUG Processing 135/639 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,661 DEBUG Processing 180/706 atomic regions from SNP 53788 to 54388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:54,706 DEBUG Processing 582/711 atomic regions from SNP 174320 to 174920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:54,716 DEBUG Processing 145/669 atomic regions from SNP 43256 to 43856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:54,859 DEBUG Processing 136/639 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,890 DEBUG Processing 181/706 atomic regions from SNP 54088 to 54688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:54,936 DEBUG Processing 146/669 atomic regions from SNP 43556 to 44156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:54,937 DEBUG Processing 583/711 atomic regions from SNP 174620 to 175220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,070 DEBUG Processing 137/639 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:55,117 DEBUG Processing 182/706 atomic regions from SNP 54388 to 54988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:55,152 DEBUG Processing 147/669 atomic regions from SNP 43856 to 44456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:55,168 DEBUG Processing 584/711 atomic regions from SNP 174920 to 175520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,272 DEBUG Processing 138/639 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:55,333 DEBUG Processing 183/706 atomic regions from SNP 54688 to 55288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:55,360 DEBUG Processing 148/669 atomic regions from SNP 44156 to 44756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:55,398 DEBUG Processing 585/711 atomic regions from SNP 175220 to 175820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,468 DEBUG Processing 139/639 atomic regions from SNP 41538 to 42139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:55,546 DEBUG Processing 184/706 atomic regions from SNP 54988 to 55588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:55,571 DEBUG Processing 149/669 atomic regions from SNP 44456 to 45056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:55,615 DEBUG Processing 586/711 atomic regions from SNP 175520 to 176120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,664 DEBUG Processing 140/639 atomic regions from SNP 41839 to 42440 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:55,768 DEBUG Processing 185/706 atomic regions from SNP 55288 to 55888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:55,798 DEBUG Processing 150/669 atomic regions from SNP 44756 to 45356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:55,847 DEBUG Processing 587/711 atomic regions from SNP 175820 to 176420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,871 DEBUG Processing 141/639 atomic regions from SNP 42140 to 42741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:55,992 DEBUG Processing 186/706 atomic regions from SNP 55588 to 56188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,021 DEBUG Processing 151/669 atomic regions from SNP 45056 to 45656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,071 DEBUG Processing 588/711 atomic regions from SNP 176120 to 176720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:56,074 DEBUG Processing 142/639 atomic regions from SNP 42441 to 43042 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,210 DEBUG Processing 187/706 atomic regions from SNP 55888 to 56488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,266 DEBUG Processing 152/669 atomic regions from SNP 45356 to 45956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,291 DEBUG Processing 143/639 atomic regions from SNP 42742 to 43343 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,300 DEBUG Processing 589/711 atomic regions from SNP 176420 to 177020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:56,434 DEBUG Processing 188/706 atomic regions from SNP 56188 to 56788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,493 DEBUG Processing 153/669 atomic regions from SNP 45656 to 46256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,516 DEBUG Processing 144/639 atomic regions from SNP 43043 to 43644 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,534 DEBUG Processing 590/711 atomic regions from SNP 176720 to 177320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:56,659 DEBUG Processing 189/706 atomic regions from SNP 56488 to 57088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,717 DEBUG Processing 154/669 atomic regions from SNP 45956 to 46556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,731 DEBUG Processing 145/639 atomic regions from SNP 43344 to 43945 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,764 DEBUG Processing 591/711 atomic regions from SNP 177020 to 177620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:56,886 DEBUG Processing 190/706 atomic regions from SNP 56788 to 57388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,934 DEBUG Processing 155/669 atomic regions from SNP 46256 to 46856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,947 DEBUG Processing 146/639 atomic regions from SNP 43645 to 44246 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,989 DEBUG Processing 592/711 atomic regions from SNP 177320 to 177920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:57,114 DEBUG Processing 191/706 atomic regions from SNP 57088 to 57688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:57,149 DEBUG Processing 156/669 atomic regions from SNP 46556 to 47156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,164 DEBUG Processing 147/639 atomic regions from SNP 43946 to 44547 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,218 DEBUG Processing 593/711 atomic regions from SNP 177620 to 178220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:57,335 DEBUG Processing 192/706 atomic regions from SNP 57388 to 57988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:57,374 DEBUG Processing 148/639 atomic regions from SNP 44247 to 44848 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,378 DEBUG Processing 157/669 atomic regions from SNP 46856 to 47456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,452 DEBUG Processing 594/711 atomic regions from SNP 177920 to 178520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:57,560 DEBUG Processing 193/706 atomic regions from SNP 57688 to 58288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:57,593 DEBUG Processing 158/669 atomic regions from SNP 47156 to 47756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,600 DEBUG Processing 149/639 atomic regions from SNP 44548 to 45149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,672 DEBUG Processing 595/711 atomic regions from SNP 178220 to 178820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:57,777 DEBUG Processing 194/706 atomic regions from SNP 57988 to 58588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:57,802 DEBUG Processing 159/669 atomic regions from SNP 47456 to 48056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,807 DEBUG Processing 150/639 atomic regions from SNP 44849 to 45450 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,893 DEBUG Processing 596/711 atomic regions from SNP 178520 to 179120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:57,994 DEBUG Processing 195/706 atomic regions from SNP 58288 to 58888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,015 DEBUG Processing 151/639 atomic regions from SNP 45150 to 45751 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,020 DEBUG Processing 160/669 atomic regions from SNP 47756 to 48356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:58,112 DEBUG Processing 597/711 atomic regions from SNP 178820 to 179420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:58,212 DEBUG Processing 196/706 atomic regions from SNP 58588 to 59188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,222 DEBUG Processing 152/639 atomic regions from SNP 45451 to 46052 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,242 DEBUG Processing 161/669 atomic regions from SNP 48056 to 48656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:58,331 DEBUG Processing 598/711 atomic regions from SNP 179120 to 179720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:58,427 DEBUG Processing 153/639 atomic regions from SNP 45752 to 46353 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,432 DEBUG Processing 197/706 atomic regions from SNP 58888 to 59488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,463 DEBUG Processing 162/669 atomic regions from SNP 48356 to 48956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:58,552 DEBUG Processing 599/711 atomic regions from SNP 179420 to 180020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:58,640 DEBUG Processing 154/639 atomic regions from SNP 46053 to 46654 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,655 DEBUG Processing 198/706 atomic regions from SNP 59188 to 59788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,688 DEBUG Processing 163/669 atomic regions from SNP 48656 to 49256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:58,777 DEBUG Processing 600/711 atomic regions from SNP 179720 to 180320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:58,853 DEBUG Processing 155/639 atomic regions from SNP 46354 to 46955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,877 DEBUG Processing 199/706 atomic regions from SNP 59488 to 60088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,907 DEBUG Processing 164/669 atomic regions from SNP 48956 to 49556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:58,998 DEBUG Processing 601/711 atomic regions from SNP 180020 to 180620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:59,062 DEBUG Processing 156/639 atomic regions from SNP 46655 to 47256 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,098 DEBUG Processing 200/706 atomic regions from SNP 59788 to 60388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:59,128 DEBUG Processing 165/669 atomic regions from SNP 49256 to 49856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:59,224 DEBUG Processing 602/711 atomic regions from SNP 180320 to 180920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:59,275 DEBUG Processing 157/639 atomic regions from SNP 46956 to 47557 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,331 DEBUG Processing 201/706 atomic regions from SNP 60088 to 60688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:59,359 DEBUG Processing 166/669 atomic regions from SNP 49556 to 50156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:59,460 DEBUG Processing 603/711 atomic regions from SNP 180620 to 181220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:59,502 DEBUG Processing 158/639 atomic regions from SNP 47257 to 47858 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,566 DEBUG Processing 202/706 atomic regions from SNP 60388 to 60988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:59,588 DEBUG Processing 167/669 atomic regions from SNP 49856 to 50456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:59,721 DEBUG Processing 159/639 atomic regions from SNP 47558 to 48159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,729 DEBUG Processing 604/711 atomic regions from SNP 180920 to 181520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:59,831 DEBUG Processing 203/706 atomic regions from SNP 60688 to 61288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:59,859 DEBUG Processing 168/669 atomic regions from SNP 50156 to 50756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:59,957 DEBUG Processing 160/639 atomic regions from SNP 47859 to 48460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,002 DEBUG Processing 605/711 atomic regions from SNP 181220 to 181820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:00,050 DEBUG Processing 204/706 atomic regions from SNP 60988 to 61588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:00,070 DEBUG Processing 169/669 atomic regions from SNP 50456 to 51056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:00,169 DEBUG Processing 161/639 atomic regions from SNP 48160 to 48761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,238 DEBUG Processing 606/711 atomic regions from SNP 181520 to 182120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:00,271 DEBUG Processing 205/706 atomic regions from SNP 61288 to 61888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:00,292 DEBUG Processing 170/669 atomic regions from SNP 50756 to 51356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:00,380 DEBUG Processing 162/639 atomic regions from SNP 48461 to 49062 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,494 DEBUG Processing 607/711 atomic regions from SNP 181820 to 182420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:00,496 DEBUG Processing 206/706 atomic regions from SNP 61588 to 62188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:00,525 DEBUG Processing 171/669 atomic regions from SNP 51056 to 51656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:00,588 DEBUG Processing 163/639 atomic regions from SNP 48762 to 49363 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,720 DEBUG Processing 207/706 atomic regions from SNP 61888 to 62488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:00,732 DEBUG Processing 608/711 atomic regions from SNP 182120 to 182720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:00,746 DEBUG Processing 172/669 atomic regions from SNP 51356 to 51956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:00,803 DEBUG Processing 164/639 atomic regions from SNP 49063 to 49664 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,982 DEBUG Processing 208/706 atomic regions from SNP 62188 to 62788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:01,013 DEBUG Processing 173/669 atomic regions from SNP 51656 to 52256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:01,015 DEBUG Processing 609/711 atomic regions from SNP 182420 to 183020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:01,059 DEBUG Processing 165/639 atomic regions from SNP 49364 to 49965 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:01,276 DEBUG Processing 209/706 atomic regions from SNP 62488 to 63088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:01,281 DEBUG Processing 174/669 atomic regions from SNP 51956 to 52556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:01,308 DEBUG Processing 610/711 atomic regions from SNP 182720 to 183320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:01,326 DEBUG Processing 166/639 atomic regions from SNP 49665 to 50266 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:01,630 DEBUG Processing 175/669 atomic regions from SNP 52256 to 52856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:01,657 DEBUG Processing 210/706 atomic regions from SNP 62788 to 63388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:01,675 DEBUG Processing 167/639 atomic regions from SNP 49966 to 50567 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:01,693 DEBUG Processing 611/711 atomic regions from SNP 183020 to 183620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:01,927 DEBUG Processing 176/669 atomic regions from SNP 52556 to 53156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,005 DEBUG Processing 211/706 atomic regions from SNP 63088 to 63688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:02,011 DEBUG Processing 168/639 atomic regions from SNP 50267 to 50868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,068 DEBUG Processing 612/711 atomic regions from SNP 183320 to 183920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:02,194 DEBUG Processing 177/669 atomic regions from SNP 52856 to 53456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,262 DEBUG Processing 169/639 atomic regions from SNP 50568 to 51169 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,270 DEBUG Processing 212/706 atomic regions from SNP 63388 to 63988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:02,346 DEBUG Processing 613/711 atomic regions from SNP 183620 to 184220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:02,483 DEBUG Processing 178/669 atomic regions from SNP 53156 to 53756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,515 DEBUG Processing 170/639 atomic regions from SNP 50869 to 51470 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,539 DEBUG Processing 213/706 atomic regions from SNP 63688 to 64288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:02,612 DEBUG Processing 614/711 atomic regions from SNP 183920 to 184520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:02,699 DEBUG Processing 179/669 atomic regions from SNP 53456 to 54056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,733 DEBUG Processing 171/639 atomic regions from SNP 51170 to 51771 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,773 DEBUG Processing 214/706 atomic regions from SNP 63988 to 64588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:02,875 DEBUG Processing 615/711 atomic regions from SNP 184220 to 184820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:02,923 DEBUG Processing 180/669 atomic regions from SNP 53756 to 54356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,956 DEBUG Processing 172/639 atomic regions from SNP 51471 to 52072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,007 DEBUG Processing 215/706 atomic regions from SNP 64288 to 64888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,113 DEBUG Processing 616/711 atomic regions from SNP 184520 to 185120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:03,147 DEBUG Processing 181/669 atomic regions from SNP 54056 to 54656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:03,168 DEBUG Processing 173/639 atomic regions from SNP 51772 to 52373 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,237 DEBUG Processing 216/706 atomic regions from SNP 64588 to 65188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,355 DEBUG Processing 617/711 atomic regions from SNP 184820 to 185420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:03,369 DEBUG Processing 182/669 atomic regions from SNP 54356 to 54956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:03,374 DEBUG Processing 174/639 atomic regions from SNP 52073 to 52674 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,452 DEBUG Processing 217/706 atomic regions from SNP 64888 to 65488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,504 DEBUG Segmenting atomic regions: 2025-01-31 09:51:03,581 DEBUG Processing 1/544 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:03,584 DEBUG Processing 175/639 atomic regions from SNP 52374 to 52975 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,591 DEBUG Processing 183/669 atomic regions from SNP 54656 to 55256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:03,611 DEBUG Processing 618/711 atomic regions from SNP 185120 to 185720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:03,668 DEBUG Processing 218/706 atomic regions from SNP 65188 to 65788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,788 DEBUG Processing 2/544 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:03,798 DEBUG Processing 176/639 atomic regions from SNP 52675 to 53276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,814 DEBUG Processing 184/669 atomic regions from SNP 54956 to 55556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:03,864 DEBUG Processing 619/711 atomic regions from SNP 185420 to 186020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:03,891 DEBUG Processing 219/706 atomic regions from SNP 65488 to 66088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,987 DEBUG Processing 3/544 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,000 DEBUG Segmenting atomic regions: 2025-01-31 09:51:04,010 DEBUG Processing 177/639 atomic regions from SNP 52976 to 53577 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:04,034 DEBUG Processing 185/669 atomic regions from SNP 55256 to 55856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:04,085 DEBUG Processing 1/589 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,123 DEBUG Processing 220/706 atomic regions from SNP 65788 to 66388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:04,131 DEBUG Processing 620/711 atomic regions from SNP 185720 to 186320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:04,211 DEBUG Processing 4/544 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,233 DEBUG Processing 178/639 atomic regions from SNP 53277 to 53878 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:04,266 DEBUG Processing 186/669 atomic regions from SNP 55556 to 56156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:04,298 DEBUG Processing 2/589 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,368 DEBUG Processing 221/706 atomic regions from SNP 66088 to 66688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:04,419 DEBUG Processing 621/711 atomic regions from SNP 186020 to 186620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:04,490 DEBUG Processing 5/544 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,518 DEBUG Processing 179/639 atomic regions from SNP 53578 to 54179 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:04,557 DEBUG Processing 187/669 atomic regions from SNP 55856 to 56456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:04,567 DEBUG Processing 3/589 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,666 DEBUG Processing 222/706 atomic regions from SNP 66388 to 66988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:04,699 DEBUG Processing 622/711 atomic regions from SNP 186320 to 186920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:04,725 DEBUG Processing 6/544 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,754 DEBUG Processing 180/639 atomic regions from SNP 53879 to 54480 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:04,781 DEBUG Processing 4/589 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,786 DEBUG Processing 188/669 atomic regions from SNP 56156 to 56756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:04,949 DEBUG Processing 223/706 atomic regions from SNP 66688 to 67288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:04,976 DEBUG Processing 623/711 atomic regions from SNP 186620 to 187220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:04,990 DEBUG Processing 7/544 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,008 DEBUG Processing 181/639 atomic regions from SNP 54180 to 54781 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:05,027 DEBUG Processing 5/589 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,046 DEBUG Processing 189/669 atomic regions from SNP 56456 to 57056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:05,169 DEBUG Processing 224/706 atomic regions from SNP 66988 to 67588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:05,206 DEBUG Processing 624/711 atomic regions from SNP 186920 to 187520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:05,249 DEBUG Processing 8/544 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,257 DEBUG Processing 182/639 atomic regions from SNP 54481 to 55082 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:05,269 DEBUG Processing 6/589 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,308 DEBUG Processing 190/669 atomic regions from SNP 56756 to 57356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:05,468 DEBUG Processing 225/706 atomic regions from SNP 67288 to 67888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:05,540 DEBUG Processing 625/711 atomic regions from SNP 187220 to 187820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:05,573 DEBUG Processing 7/589 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,582 DEBUG Processing 183/639 atomic regions from SNP 54782 to 55383 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:05,583 DEBUG Processing 9/544 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,611 DEBUG Processing 191/669 atomic regions from SNP 57056 to 57656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:05,715 DEBUG Processing 226/706 atomic regions from SNP 67588 to 68188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:05,789 DEBUG Processing 8/589 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,793 DEBUG Processing 626/711 atomic regions from SNP 187520 to 188120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:05,811 DEBUG Processing 184/639 atomic regions from SNP 55083 to 55684 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:05,825 DEBUG Processing 10/544 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,842 DEBUG Processing 192/669 atomic regions from SNP 57356 to 57956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:05,945 DEBUG Processing 227/706 atomic regions from SNP 67888 to 68488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:05,998 DEBUG Processing 9/589 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,020 DEBUG Processing 185/639 atomic regions from SNP 55384 to 55985 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,024 DEBUG Processing 627/711 atomic regions from SNP 187820 to 188420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:06,039 DEBUG Processing 11/544 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,058 DEBUG Processing 193/669 atomic regions from SNP 57656 to 58256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,163 DEBUG Processing 228/706 atomic regions from SNP 68188 to 68788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:06,206 DEBUG Processing 10/589 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,228 DEBUG Processing 186/639 atomic regions from SNP 55685 to 56286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,255 DEBUG Processing 628/711 atomic regions from SNP 188120 to 188720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:06,262 DEBUG Processing 12/544 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,275 DEBUG Processing 194/669 atomic regions from SNP 57956 to 58556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,388 DEBUG Processing 229/706 atomic regions from SNP 68488 to 69088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:06,413 DEBUG Processing 11/589 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,447 DEBUG Processing 187/639 atomic regions from SNP 55986 to 56587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,466 DEBUG Processing 13/544 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,497 DEBUG Processing 629/711 atomic regions from SNP 188420 to 189020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:06,500 DEBUG Processing 195/669 atomic regions from SNP 58256 to 58856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,607 DEBUG Processing 230/706 atomic regions from SNP 68788 to 69388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:06,634 DEBUG Processing 12/589 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,667 DEBUG Processing 188/639 atomic regions from SNP 56287 to 56888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,674 DEBUG Processing 14/544 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,717 DEBUG Processing 196/669 atomic regions from SNP 58556 to 59156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,756 DEBUG Processing 630/711 atomic regions from SNP 188720 to 189320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:06,831 DEBUG Processing 231/706 atomic regions from SNP 69088 to 69688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:06,852 DEBUG Processing 13/589 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,883 DEBUG Processing 15/544 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,888 DEBUG Processing 189/639 atomic regions from SNP 56588 to 57189 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,937 DEBUG Processing 197/669 atomic regions from SNP 58856 to 59456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,993 DEBUG Processing 631/711 atomic regions from SNP 189020 to 189620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,050 DEBUG Processing 232/706 atomic regions from SNP 69388 to 69988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:07,056 DEBUG Processing 14/589 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,088 DEBUG Processing 16/544 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,103 DEBUG Processing 190/639 atomic regions from SNP 56889 to 57490 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:07,184 DEBUG Processing 198/669 atomic regions from SNP 59156 to 59756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:07,220 DEBUG Processing 632/711 atomic regions from SNP 189320 to 189920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,255 DEBUG Processing 15/589 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,273 DEBUG Processing 233/706 atomic regions from SNP 69688 to 70288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:07,285 DEBUG Processing 17/544 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,312 DEBUG Processing 191/639 atomic regions from SNP 57190 to 57791 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:07,425 DEBUG Processing 199/669 atomic regions from SNP 59456 to 60056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:07,455 DEBUG Processing 633/711 atomic regions from SNP 189620 to 190220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,462 DEBUG Processing 16/589 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,492 DEBUG Processing 18/544 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,505 DEBUG Processing 234/706 atomic regions from SNP 69988 to 70588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:07,526 DEBUG Processing 192/639 atomic regions from SNP 57491 to 58092 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:07,650 DEBUG Processing 200/669 atomic regions from SNP 59756 to 60356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:07,678 DEBUG Processing 17/589 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,699 DEBUG Processing 634/711 atomic regions from SNP 189920 to 190520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,707 DEBUG Processing 19/544 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,739 DEBUG Processing 235/706 atomic regions from SNP 70288 to 70888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:07,744 DEBUG Processing 193/639 atomic regions from SNP 57792 to 58393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:07,874 DEBUG Processing 201/669 atomic regions from SNP 60056 to 60656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:07,891 DEBUG Processing 18/589 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,912 DEBUG Processing 20/544 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,931 DEBUG Processing 635/711 atomic regions from SNP 190220 to 190820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,961 DEBUG Processing 194/639 atomic regions from SNP 58093 to 58694 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:07,968 DEBUG Processing 236/706 atomic regions from SNP 70588 to 71188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,099 DEBUG Processing 202/669 atomic regions from SNP 60356 to 60956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:08,108 DEBUG Processing 19/589 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,111 DEBUG Processing 21/544 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,162 DEBUG Processing 636/711 atomic regions from SNP 190520 to 191120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:08,177 DEBUG Processing 195/639 atomic regions from SNP 58394 to 58995 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,198 DEBUG Processing 237/706 atomic regions from SNP 70888 to 71488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,304 DEBUG Processing 22/544 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,320 DEBUG Processing 20/589 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,336 DEBUG Processing 203/669 atomic regions from SNP 60656 to 61256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:08,392 DEBUG Processing 196/639 atomic regions from SNP 58695 to 59296 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,396 DEBUG Processing 637/711 atomic regions from SNP 190820 to 191420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:08,429 DEBUG Processing 238/706 atomic regions from SNP 71188 to 71788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,498 DEBUG Processing 23/544 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,533 DEBUG Processing 21/589 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,559 DEBUG Processing 204/669 atomic regions from SNP 60956 to 61556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:08,604 DEBUG Processing 197/639 atomic regions from SNP 58996 to 59597 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,624 DEBUG Processing 638/711 atomic regions from SNP 191120 to 191720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:08,658 DEBUG Processing 239/706 atomic regions from SNP 71488 to 72088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,698 DEBUG Processing 24/544 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,747 DEBUG Processing 22/589 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,786 DEBUG Processing 205/669 atomic regions from SNP 61256 to 61856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:08,810 DEBUG Processing 198/639 atomic regions from SNP 59297 to 59898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,847 DEBUG Processing 639/711 atomic regions from SNP 191420 to 192020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:08,882 DEBUG Processing 240/706 atomic regions from SNP 71788 to 72388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,901 DEBUG Processing 25/544 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,960 DEBUG Processing 23/589 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,017 DEBUG Processing 206/669 atomic regions from SNP 61556 to 62156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:09,023 DEBUG Processing 199/639 atomic regions from SNP 59598 to 60198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,077 DEBUG Processing 640/711 atomic regions from SNP 191720 to 192320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:09,105 DEBUG Processing 26/544 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,110 DEBUG Processing 241/706 atomic regions from SNP 72088 to 72688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:09,171 DEBUG Processing 24/589 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,234 DEBUG Processing 200/639 atomic regions from SNP 59898 to 60498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,246 DEBUG Processing 207/669 atomic regions from SNP 61856 to 62456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:09,305 DEBUG Processing 641/711 atomic regions from SNP 192020 to 192620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:09,307 DEBUG Processing 27/544 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,338 DEBUG Processing 242/706 atomic regions from SNP 72388 to 72988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:09,383 DEBUG Processing 25/589 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,449 DEBUG Processing 201/639 atomic regions from SNP 60198 to 60798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,475 DEBUG Processing 208/669 atomic regions from SNP 62156 to 62756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:09,509 DEBUG Processing 28/544 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,541 DEBUG Processing 642/711 atomic regions from SNP 192320 to 192920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:09,564 DEBUG Processing 243/706 atomic regions from SNP 72688 to 73288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:09,600 DEBUG Processing 26/589 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,666 DEBUG Processing 202/639 atomic regions from SNP 60498 to 61098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,703 DEBUG Processing 209/669 atomic regions from SNP 62456 to 63056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:09,711 DEBUG Processing 29/544 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,773 DEBUG Processing 643/711 atomic regions from SNP 192620 to 193220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:09,792 DEBUG Processing 244/706 atomic regions from SNP 72988 to 73588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:09,824 DEBUG Processing 27/589 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,892 DEBUG Processing 203/639 atomic regions from SNP 60798 to 61398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,926 DEBUG Processing 30/544 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,941 DEBUG Processing 210/669 atomic regions from SNP 62756 to 63356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:10,006 DEBUG Processing 644/711 atomic regions from SNP 192920 to 193520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,019 DEBUG Processing 245/706 atomic regions from SNP 73288 to 73888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:10,043 DEBUG Processing 28/589 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,116 DEBUG Processing 204/639 atomic regions from SNP 61098 to 61698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:10,135 DEBUG Processing 31/544 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,172 DEBUG Processing 211/669 atomic regions from SNP 63056 to 63656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:10,234 DEBUG Processing 645/711 atomic regions from SNP 193220 to 193820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,242 DEBUG Processing 246/706 atomic regions from SNP 73588 to 74188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:10,286 DEBUG Processing 29/589 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,365 DEBUG Processing 205/639 atomic regions from SNP 61398 to 61998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:10,398 DEBUG Processing 32/544 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,452 DEBUG Processing 212/669 atomic regions from SNP 63356 to 63956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:10,515 DEBUG Processing 646/711 atomic regions from SNP 193520 to 194120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,523 DEBUG Processing 247/706 atomic regions from SNP 73888 to 74488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:10,573 DEBUG Processing 30/589 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,641 DEBUG Processing 206/639 atomic regions from SNP 61698 to 62298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:10,657 DEBUG Processing 33/544 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,731 DEBUG Processing 213/669 atomic regions from SNP 63656 to 64256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:10,846 DEBUG Processing 248/706 atomic regions from SNP 74188 to 74788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:10,848 DEBUG Processing 647/711 atomic regions from SNP 193820 to 194420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,867 DEBUG Processing 31/589 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,937 DEBUG Processing 34/544 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,949 DEBUG Processing 207/639 atomic regions from SNP 61998 to 62598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,021 DEBUG Processing 214/669 atomic regions from SNP 63956 to 64556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:11,154 DEBUG Processing 32/589 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:11,161 DEBUG Processing 249/706 atomic regions from SNP 74488 to 75088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:11,162 DEBUG Processing 648/711 atomic regions from SNP 194120 to 194720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,189 DEBUG Processing 35/544 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:11,207 DEBUG Processing 208/639 atomic regions from SNP 62298 to 62898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,262 DEBUG Processing 215/669 atomic regions from SNP 64256 to 64856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:11,386 DEBUG Processing 33/589 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:11,398 DEBUG Processing 250/706 atomic regions from SNP 74788 to 75388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:11,399 DEBUG Processing 649/711 atomic regions from SNP 194420 to 195020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,414 DEBUG Processing 36/544 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:11,442 DEBUG Processing 209/639 atomic regions from SNP 62598 to 63198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,502 DEBUG Processing 216/669 atomic regions from SNP 64556 to 65156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:11,598 DEBUG Processing 34/589 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:11,625 DEBUG Processing 37/544 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:11,628 DEBUG Processing 251/706 atomic regions from SNP 75088 to 75688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:11,632 DEBUG Processing 650/711 atomic regions from SNP 194720 to 195320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,667 DEBUG Processing 210/639 atomic regions from SNP 62898 to 63498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,740 DEBUG Processing 217/669 atomic regions from SNP 64856 to 65456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:11,827 DEBUG Processing 38/544 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:11,834 DEBUG Processing 35/589 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:11,853 DEBUG Processing 252/706 atomic regions from SNP 75388 to 75988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:11,861 DEBUG Processing 651/711 atomic regions from SNP 195020 to 195620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,887 DEBUG Processing 211/639 atomic regions from SNP 63198 to 63798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,968 DEBUG Processing 218/669 atomic regions from SNP 65156 to 65756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,026 DEBUG Processing 39/544 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,066 DEBUG Processing 36/589 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,083 DEBUG Processing 253/706 atomic regions from SNP 75688 to 76288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,098 DEBUG Processing 652/711 atomic regions from SNP 195320 to 195920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,112 DEBUG Processing 212/639 atomic regions from SNP 63498 to 64098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:12,203 DEBUG Processing 219/669 atomic regions from SNP 65456 to 66056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,235 DEBUG Processing 40/544 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,286 DEBUG Processing 37/589 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,319 DEBUG Processing 254/706 atomic regions from SNP 75988 to 76588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,331 DEBUG Processing 213/639 atomic regions from SNP 63798 to 64398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:12,334 DEBUG Processing 653/711 atomic regions from SNP 195620 to 196220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,421 DEBUG Processing 220/669 atomic regions from SNP 65756 to 66356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,438 DEBUG Processing 41/544 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,506 DEBUG Processing 38/589 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,553 DEBUG Processing 255/706 atomic regions from SNP 76288 to 76888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,558 DEBUG Processing 214/639 atomic regions from SNP 64098 to 64698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:12,572 DEBUG Processing 654/711 atomic regions from SNP 195920 to 196520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,638 DEBUG Processing 221/669 atomic regions from SNP 66056 to 66656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,644 DEBUG Processing 42/544 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,724 DEBUG Processing 39/589 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,779 DEBUG Processing 215/639 atomic regions from SNP 64398 to 64998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:12,786 DEBUG Processing 256/706 atomic regions from SNP 76588 to 77188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,807 DEBUG Processing 655/711 atomic regions from SNP 196220 to 196820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,848 DEBUG Processing 43/544 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,862 DEBUG Processing 222/669 atomic regions from SNP 66356 to 66956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,921 DEBUG Processing 40/589 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,992 DEBUG Processing 216/639 atomic regions from SNP 64698 to 65298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,008 DEBUG Processing 257/706 atomic regions from SNP 76888 to 77488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:13,037 DEBUG Processing 656/711 atomic regions from SNP 196520 to 197120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,062 DEBUG Processing 44/544 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,084 DEBUG Processing 223/669 atomic regions from SNP 66656 to 67256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:13,126 DEBUG Processing 41/589 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,205 DEBUG Processing 217/639 atomic regions from SNP 64998 to 65598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,230 DEBUG Processing 258/706 atomic regions from SNP 77188 to 77788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:13,262 DEBUG Processing 657/711 atomic regions from SNP 196820 to 197420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,269 DEBUG Processing 45/544 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,308 DEBUG Processing 224/669 atomic regions from SNP 66956 to 67556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:13,334 DEBUG Processing 42/589 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,423 DEBUG Processing 218/639 atomic regions from SNP 65298 to 65898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,473 DEBUG Processing 259/706 atomic regions from SNP 77488 to 78088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:13,490 DEBUG Processing 46/544 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,509 DEBUG Processing 658/711 atomic regions from SNP 197120 to 197720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,548 DEBUG Processing 225/669 atomic regions from SNP 67256 to 67856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:13,556 DEBUG Processing 43/589 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,637 DEBUG Processing 219/639 atomic regions from SNP 65598 to 66198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,697 DEBUG Processing 47/544 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,723 DEBUG Processing 260/706 atomic regions from SNP 77788 to 78388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:13,735 DEBUG Processing 659/711 atomic regions from SNP 197420 to 198020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,768 DEBUG Processing 44/589 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,778 DEBUG Processing 226/669 atomic regions from SNP 67556 to 68156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:13,850 DEBUG Processing 220/639 atomic regions from SNP 65898 to 66498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,911 DEBUG Processing 48/544 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,952 DEBUG Processing 261/706 atomic regions from SNP 78088 to 78688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:13,970 DEBUG Processing 660/711 atomic regions from SNP 197720 to 198320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,984 DEBUG Processing 45/589 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,010 DEBUG Processing 227/669 atomic regions from SNP 67856 to 68456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,071 DEBUG Processing 221/639 atomic regions from SNP 66198 to 66798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:14,121 DEBUG Processing 49/544 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,195 DEBUG Processing 262/706 atomic regions from SNP 78388 to 78988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:14,210 DEBUG Processing 46/589 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,225 DEBUG Processing 661/711 atomic regions from SNP 198020 to 198620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,264 DEBUG Processing 228/669 atomic regions from SNP 68156 to 68756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,330 DEBUG Processing 222/639 atomic regions from SNP 66498 to 67098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:14,390 DEBUG Processing 50/544 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,504 DEBUG Processing 47/589 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,516 DEBUG Processing 263/706 atomic regions from SNP 78688 to 79288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:14,554 DEBUG Processing 662/711 atomic regions from SNP 198320 to 198920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,571 DEBUG Processing 229/669 atomic regions from SNP 68456 to 69056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,651 DEBUG Processing 223/639 atomic regions from SNP 66798 to 67398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:14,653 DEBUG Processing 51/544 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,717 DEBUG Processing 48/589 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,743 DEBUG Processing 264/706 atomic regions from SNP 78988 to 79588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:14,782 DEBUG Processing 663/711 atomic regions from SNP 198620 to 199220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,785 DEBUG Processing 230/669 atomic regions from SNP 68756 to 69356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,861 DEBUG Processing 52/544 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,871 DEBUG Processing 224/639 atomic regions from SNP 67098 to 67698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:14,936 DEBUG Processing 49/589 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,994 DEBUG Processing 265/706 atomic regions from SNP 79288 to 79888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:15,026 DEBUG Processing 231/669 atomic regions from SNP 69056 to 69656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:15,030 DEBUG Processing 664/711 atomic regions from SNP 198920 to 199520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,081 DEBUG Processing 53/544 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,105 DEBUG Processing 225/639 atomic regions from SNP 67398 to 67998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,195 DEBUG Processing 50/589 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:15,281 DEBUG Processing 266/706 atomic regions from SNP 79588 to 80188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:15,317 DEBUG Processing 232/669 atomic regions from SNP 69356 to 69956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:15,328 DEBUG Processing 54/544 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,333 DEBUG Processing 665/711 atomic regions from SNP 199220 to 199820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,362 DEBUG Processing 226/639 atomic regions from SNP 67698 to 68298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,469 DEBUG Processing 51/589 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:15,616 DEBUG Processing 267/706 atomic regions from SNP 79888 to 80488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:15,636 DEBUG Processing 55/544 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,651 DEBUG Processing 233/669 atomic regions from SNP 69656 to 70256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:15,666 DEBUG Processing 666/711 atomic regions from SNP 199520 to 200120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,673 DEBUG Processing 227/639 atomic regions from SNP 67998 to 68598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,723 DEBUG Processing 52/589 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:15,855 DEBUG Processing 56/544 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,869 DEBUG Processing 268/706 atomic regions from SNP 80188 to 80788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:15,882 DEBUG Processing 234/669 atomic regions from SNP 69956 to 70556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:15,912 DEBUG Processing 228/639 atomic regions from SNP 68298 to 68898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,916 DEBUG Processing 667/711 atomic regions from SNP 199820 to 200420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,960 DEBUG Processing 53/589 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,060 DEBUG Processing 57/544 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:16,100 DEBUG Processing 269/706 atomic regions from SNP 80488 to 81088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,109 DEBUG Processing 235/669 atomic regions from SNP 70256 to 70856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:16,141 DEBUG Processing 229/639 atomic regions from SNP 68598 to 69198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,158 DEBUG Processing 668/711 atomic regions from SNP 200120 to 200720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,198 DEBUG Processing 54/589 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,261 DEBUG Processing 58/544 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:16,322 DEBUG Processing 270/706 atomic regions from SNP 80788 to 81388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,327 DEBUG Processing 236/669 atomic regions from SNP 70556 to 71156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:16,360 DEBUG Processing 230/639 atomic regions from SNP 68898 to 69498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,396 DEBUG Processing 669/711 atomic regions from SNP 200420 to 201020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,431 DEBUG Processing 55/589 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,467 DEBUG Processing 59/544 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:16,541 DEBUG Processing 271/706 atomic regions from SNP 81088 to 81688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,544 DEBUG Processing 237/669 atomic regions from SNP 70856 to 71456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:16,570 DEBUG Processing 231/639 atomic regions from SNP 69198 to 69798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,628 DEBUG Processing 670/711 atomic regions from SNP 200720 to 201320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,643 DEBUG Processing 56/589 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,675 DEBUG Processing 60/544 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:16,763 DEBUG Processing 272/706 atomic regions from SNP 81388 to 81988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,764 DEBUG Processing 238/669 atomic regions from SNP 71156 to 71756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:16,779 DEBUG Processing 232/639 atomic regions from SNP 69498 to 70098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,910 DEBUG Processing 671/711 atomic regions from SNP 201020 to 201620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,915 DEBUG Processing 57/589 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,972 DEBUG Processing 61/544 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,052 DEBUG Processing 273/706 atomic regions from SNP 81688 to 82288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:17,060 DEBUG Processing 233/639 atomic regions from SNP 69798 to 70398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,064 DEBUG Processing 239/669 atomic regions from SNP 71456 to 72056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,145 DEBUG Processing 58/589 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,154 DEBUG Processing 672/711 atomic regions from SNP 201320 to 201920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,195 DEBUG Processing 62/544 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,342 DEBUG Processing 274/706 atomic regions from SNP 81988 to 82588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:17,347 DEBUG Processing 234/639 atomic regions from SNP 70098 to 70698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,360 DEBUG Processing 240/669 atomic regions from SNP 71756 to 72356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,401 DEBUG Processing 59/589 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,425 DEBUG Processing 673/711 atomic regions from SNP 201620 to 202220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,436 DEBUG Processing 63/544 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,560 DEBUG Processing 235/639 atomic regions from SNP 70398 to 70998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,565 DEBUG Processing 275/706 atomic regions from SNP 82288 to 82888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:17,604 DEBUG Processing 241/669 atomic regions from SNP 72056 to 72656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,612 DEBUG Processing 60/589 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,648 DEBUG Processing 64/544 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,660 DEBUG Processing 674/711 atomic regions from SNP 201920 to 202520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,770 DEBUG Processing 236/639 atomic regions from SNP 70698 to 71298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,809 DEBUG Processing 276/706 atomic regions from SNP 82588 to 83188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:17,818 DEBUG Processing 61/589 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,826 DEBUG Processing 242/669 atomic regions from SNP 72356 to 72956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,848 DEBUG Processing 65/544 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,888 DEBUG Processing 675/711 atomic regions from SNP 202220 to 202820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,978 DEBUG Processing 237/639 atomic regions from SNP 70998 to 71598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,033 DEBUG Processing 62/589 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,049 DEBUG Processing 277/706 atomic regions from SNP 82888 to 83488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:18,054 DEBUG Processing 243/669 atomic regions from SNP 72656 to 73256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:18,055 DEBUG Processing 66/544 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,116 DEBUG Processing 676/711 atomic regions from SNP 202520 to 203120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,186 DEBUG Processing 238/639 atomic regions from SNP 71298 to 71898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,251 DEBUG Processing 63/589 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,258 DEBUG Processing 67/544 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,285 DEBUG Processing 244/669 atomic regions from SNP 72956 to 73556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:18,286 DEBUG Processing 278/706 atomic regions from SNP 83188 to 83788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:18,349 DEBUG Processing 677/711 atomic regions from SNP 202820 to 203420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,395 DEBUG Processing 239/639 atomic regions from SNP 71598 to 72198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,453 DEBUG Processing 64/589 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,456 DEBUG Processing 68/544 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,501 DEBUG Processing 245/669 atomic regions from SNP 73256 to 73856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:18,510 DEBUG Processing 279/706 atomic regions from SNP 83488 to 84088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:18,578 DEBUG Processing 678/711 atomic regions from SNP 203120 to 203720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,605 DEBUG Processing 240/639 atomic regions from SNP 71898 to 72498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,651 DEBUG Processing 69/544 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,655 DEBUG Processing 65/589 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,714 DEBUG Processing 246/669 atomic regions from SNP 73556 to 74156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:18,739 DEBUG Processing 280/706 atomic regions from SNP 83788 to 84388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:18,800 DEBUG Processing 679/711 atomic regions from SNP 203420 to 204020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,812 DEBUG Processing 241/639 atomic regions from SNP 72198 to 72798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,843 DEBUG Processing 70/544 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,859 DEBUG Processing 66/589 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,929 DEBUG Processing 247/669 atomic regions from SNP 73856 to 74456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:18,962 DEBUG Processing 281/706 atomic regions from SNP 84088 to 84688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,026 DEBUG Processing 242/639 atomic regions from SNP 72498 to 73098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,027 DEBUG Processing 680/711 atomic regions from SNP 203720 to 204320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,039 DEBUG Processing 71/544 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,062 DEBUG Processing 67/589 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,170 DEBUG Processing 248/669 atomic regions from SNP 74156 to 74756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:19,183 DEBUG Processing 282/706 atomic regions from SNP 84388 to 84988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,239 DEBUG Processing 72/544 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,241 DEBUG Processing 243/639 atomic regions from SNP 72798 to 73398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,255 DEBUG Processing 681/711 atomic regions from SNP 204020 to 204620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,259 DEBUG Processing 68/589 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,406 DEBUG Processing 283/706 atomic regions from SNP 84688 to 85288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,411 DEBUG Processing 249/669 atomic regions from SNP 74456 to 75056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:19,457 DEBUG Processing 73/544 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,463 DEBUG Processing 69/589 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,465 DEBUG Processing 244/639 atomic regions from SNP 73098 to 73698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,509 DEBUG Processing 682/711 atomic regions from SNP 204320 to 204920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,624 DEBUG Processing 284/706 atomic regions from SNP 84988 to 85588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,630 DEBUG Processing 250/669 atomic regions from SNP 74756 to 75356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:19,659 DEBUG Processing 74/544 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,670 DEBUG Processing 70/589 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,680 DEBUG Processing 245/639 atomic regions from SNP 73398 to 73998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,754 DEBUG Processing 683/711 atomic regions from SNP 204620 to 205220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,838 DEBUG Processing 285/706 atomic regions from SNP 85288 to 85888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,844 DEBUG Processing 251/669 atomic regions from SNP 75056 to 75656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:19,854 DEBUG Processing 75/544 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,877 DEBUG Processing 71/589 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,892 DEBUG Processing 246/639 atomic regions from SNP 73698 to 74298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,979 DEBUG Processing 684/711 atomic regions from SNP 204920 to 205520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,049 DEBUG Processing 76/544 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,053 DEBUG Processing 286/706 atomic regions from SNP 85588 to 86188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:20,057 DEBUG Processing 252/669 atomic regions from SNP 75356 to 75956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:20,080 DEBUG Processing 72/589 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,099 DEBUG Processing 247/639 atomic regions from SNP 73998 to 74598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,203 DEBUG Processing 685/711 atomic regions from SNP 205220 to 205820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,245 DEBUG Processing 77/544 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,271 DEBUG Processing 253/669 atomic regions from SNP 75656 to 76256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:20,272 DEBUG Processing 287/706 atomic regions from SNP 85888 to 86488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:20,280 DEBUG Processing 73/589 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,303 DEBUG Processing 248/639 atomic regions from SNP 74298 to 74898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,429 DEBUG Processing 686/711 atomic regions from SNP 205520 to 206120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,448 DEBUG Processing 78/544 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,485 DEBUG Processing 74/589 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,488 DEBUG Processing 254/669 atomic regions from SNP 75956 to 76556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:20,506 DEBUG Processing 288/706 atomic regions from SNP 86188 to 86788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:20,511 DEBUG Processing 249/639 atomic regions from SNP 74598 to 75198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,653 DEBUG Processing 79/544 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,672 DEBUG Processing 687/711 atomic regions from SNP 205820 to 206420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,690 DEBUG Processing 75/589 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,719 DEBUG Processing 255/669 atomic regions from SNP 76256 to 76856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:20,725 DEBUG Processing 250/639 atomic regions from SNP 74898 to 75498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,732 DEBUG Processing 289/706 atomic regions from SNP 86488 to 87088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:20,849 DEBUG Processing 80/544 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,893 DEBUG Processing 76/589 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,903 DEBUG Processing 688/711 atomic regions from SNP 206120 to 206720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,956 DEBUG Processing 256/669 atomic regions from SNP 76556 to 77156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:20,959 DEBUG Processing 251/639 atomic regions from SNP 75198 to 75798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,960 DEBUG Processing 290/706 atomic regions from SNP 86788 to 87388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,044 DEBUG Processing 81/544 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,095 DEBUG Processing 77/589 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,130 DEBUG Processing 689/711 atomic regions from SNP 206420 to 207020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,173 DEBUG Processing 257/669 atomic regions from SNP 76856 to 77456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:21,175 DEBUG Processing 252/639 atomic regions from SNP 75498 to 76098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:21,184 DEBUG Processing 291/706 atomic regions from SNP 87088 to 87688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,262 DEBUG Processing 82/544 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,298 DEBUG Processing 78/589 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,370 DEBUG Processing 690/711 atomic regions from SNP 206720 to 207320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,385 DEBUG Processing 258/669 atomic regions from SNP 77156 to 77756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:21,395 DEBUG Processing 253/639 atomic regions from SNP 75798 to 76398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:21,414 DEBUG Processing 292/706 atomic regions from SNP 87388 to 87988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,482 DEBUG Processing 83/544 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,505 DEBUG Processing 79/589 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,595 DEBUG Processing 691/711 atomic regions from SNP 207020 to 207620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,604 DEBUG Processing 259/669 atomic regions from SNP 77456 to 78056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:21,608 DEBUG Processing 254/639 atomic regions from SNP 76098 to 76698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:21,642 DEBUG Processing 293/706 atomic regions from SNP 87688 to 88288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,688 DEBUG Processing 84/544 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,705 DEBUG Processing 80/589 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,820 DEBUG Processing 692/711 atomic regions from SNP 207320 to 207920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,820 DEBUG Processing 255/639 atomic regions from SNP 76398 to 76998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:21,824 DEBUG Processing 260/669 atomic regions from SNP 77756 to 78356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:21,870 DEBUG Processing 294/706 atomic regions from SNP 87988 to 88588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,908 DEBUG Processing 81/589 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,914 DEBUG Processing 85/544 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,032 DEBUG Processing 256/639 atomic regions from SNP 76698 to 77298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,042 DEBUG Processing 261/669 atomic regions from SNP 78056 to 78656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,047 DEBUG Processing 693/711 atomic regions from SNP 207620 to 208220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,098 DEBUG Processing 295/706 atomic regions from SNP 88288 to 88888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:22,115 DEBUG Processing 82/589 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,120 DEBUG Processing 86/544 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,244 DEBUG Processing 257/639 atomic regions from SNP 76998 to 77598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,257 DEBUG Processing 262/669 atomic regions from SNP 78356 to 78956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,274 DEBUG Processing 694/711 atomic regions from SNP 207920 to 208520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,324 DEBUG Processing 83/589 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,332 DEBUG Processing 296/706 atomic regions from SNP 88588 to 89188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:22,353 DEBUG Processing 87/544 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,450 DEBUG Processing 258/639 atomic regions from SNP 77298 to 77898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,473 DEBUG Processing 263/669 atomic regions from SNP 78656 to 79256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,515 DEBUG Processing 695/711 atomic regions from SNP 208220 to 208820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,534 DEBUG Processing 84/589 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,558 DEBUG Processing 297/706 atomic regions from SNP 88888 to 89488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:22,574 DEBUG Processing 88/544 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,661 DEBUG Processing 259/639 atomic regions from SNP 77598 to 78198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,693 DEBUG Processing 264/669 atomic regions from SNP 78956 to 79556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,742 DEBUG Processing 85/589 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,745 DEBUG Processing 696/711 atomic regions from SNP 208520 to 209120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,785 DEBUG Processing 298/706 atomic regions from SNP 89188 to 89788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:22,793 DEBUG Processing 89/544 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,876 DEBUG Processing 260/639 atomic regions from SNP 77898 to 78498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,928 DEBUG Processing 265/669 atomic regions from SNP 79256 to 79856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,947 DEBUG Processing 86/589 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,989 DEBUG Processing 697/711 atomic regions from SNP 208820 to 209420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,009 DEBUG Processing 299/706 atomic regions from SNP 89488 to 90088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,020 DEBUG Processing 90/544 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:23,089 DEBUG Processing 261/639 atomic regions from SNP 78198 to 78798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,163 DEBUG Processing 87/589 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:23,170 DEBUG Processing 266/669 atomic regions from SNP 79556 to 80156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,224 DEBUG Processing 698/711 atomic regions from SNP 209120 to 209720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,231 DEBUG Processing 91/544 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:23,263 DEBUG Processing 300/706 atomic regions from SNP 89788 to 90388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,303 DEBUG Processing 262/639 atomic regions from SNP 78498 to 79098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,379 DEBUG Processing 88/589 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:23,423 DEBUG Processing 267/669 atomic regions from SNP 79856 to 80456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,436 DEBUG Processing 92/544 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:23,453 DEBUG Processing 699/711 atomic regions from SNP 209420 to 210020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,487 DEBUG Processing 301/706 atomic regions from SNP 90088 to 90688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,519 DEBUG Processing 263/639 atomic regions from SNP 78798 to 79398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,590 DEBUG Processing 89/589 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:23,648 DEBUG Processing 93/544 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:23,674 DEBUG Processing 268/669 atomic regions from SNP 80156 to 80756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,689 DEBUG Processing 700/711 atomic regions from SNP 209720 to 210320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,715 DEBUG Processing 302/706 atomic regions from SNP 90388 to 90988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,736 DEBUG Processing 264/639 atomic regions from SNP 79098 to 79698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,791 DEBUG Processing 90/589 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:23,847 DEBUG Processing 94/544 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:23,917 DEBUG Processing 269/669 atomic regions from SNP 80456 to 81056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,927 DEBUG Processing 701/711 atomic regions from SNP 210020 to 210620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,945 DEBUG Processing 303/706 atomic regions from SNP 90688 to 91288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,954 DEBUG Processing 265/639 atomic regions from SNP 79398 to 79998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,996 DEBUG Processing 91/589 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,049 DEBUG Processing 95/544 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,160 DEBUG Processing 702/711 atomic regions from SNP 210320 to 210920 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,167 DEBUG Processing 270/669 atomic regions from SNP 80756 to 81356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:24,173 DEBUG Processing 304/706 atomic regions from SNP 90988 to 91588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,174 DEBUG Processing 266/639 atomic regions from SNP 79698 to 80298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,215 DEBUG Processing 92/589 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,255 DEBUG Processing 96/544 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,392 DEBUG Processing 267/639 atomic regions from SNP 79998 to 80598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,396 DEBUG Processing 703/711 atomic regions from SNP 210620 to 211220 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,396 DEBUG Processing 271/669 atomic regions from SNP 81056 to 81656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:24,400 DEBUG Processing 305/706 atomic regions from SNP 91288 to 91888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,436 DEBUG Processing 93/589 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,463 DEBUG Processing 97/544 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,610 DEBUG Processing 268/639 atomic regions from SNP 80298 to 80898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,617 DEBUG Processing 272/669 atomic regions from SNP 81356 to 81956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:24,626 DEBUG Processing 306/706 atomic regions from SNP 91588 to 92188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,628 DEBUG Processing 704/711 atomic regions from SNP 210920 to 211520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,650 DEBUG Processing 94/589 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,664 DEBUG Processing 98/544 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,840 DEBUG Processing 273/669 atomic regions from SNP 81656 to 82256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:24,840 DEBUG Processing 269/639 atomic regions from SNP 80598 to 81198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,857 DEBUG Processing 95/589 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,860 DEBUG Processing 307/706 atomic regions from SNP 91888 to 92488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,865 DEBUG Processing 705/711 atomic regions from SNP 211220 to 211820 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,868 DEBUG Processing 99/544 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,068 DEBUG Processing 270/639 atomic regions from SNP 80898 to 81498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,073 DEBUG Processing 274/669 atomic regions from SNP 81956 to 82556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,073 DEBUG Processing 96/589 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,079 DEBUG Processing 100/544 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,096 DEBUG Processing 308/706 atomic regions from SNP 92188 to 92788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,102 DEBUG Processing 706/711 atomic regions from SNP 211520 to 212120 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,293 DEBUG Processing 271/639 atomic regions from SNP 81198 to 81798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,293 DEBUG Processing 97/589 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,297 DEBUG Processing 101/544 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,314 DEBUG Processing 275/669 atomic regions from SNP 82256 to 82856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,332 DEBUG Processing 309/706 atomic regions from SNP 92488 to 93088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,343 DEBUG Processing 707/711 atomic regions from SNP 211820 to 212420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,509 DEBUG Processing 98/589 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,523 DEBUG Processing 272/639 atomic regions from SNP 81498 to 82098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,537 DEBUG Processing 102/544 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,557 DEBUG Processing 276/669 atomic regions from SNP 82556 to 83156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,563 DEBUG Processing 310/706 atomic regions from SNP 92788 to 93388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,584 DEBUG Processing 708/711 atomic regions from SNP 212120 to 212720 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,726 DEBUG Processing 99/589 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,741 DEBUG Processing 273/639 atomic regions from SNP 81798 to 82398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,776 DEBUG Processing 103/544 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,790 DEBUG Processing 277/669 atomic regions from SNP 82856 to 83456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,795 DEBUG Processing 311/706 atomic regions from SNP 93088 to 93688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,819 DEBUG Processing 709/711 atomic regions from SNP 212420 to 213020 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,939 DEBUG Processing 100/589 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,954 DEBUG Processing 274/639 atomic regions from SNP 82098 to 82698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,980 DEBUG Processing 104/544 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:26,017 DEBUG Processing 278/669 atomic regions from SNP 83156 to 83756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:26,021 DEBUG Processing 312/706 atomic regions from SNP 93388 to 93988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,054 DEBUG Processing 710/711 atomic regions from SNP 212720 to 213320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,155 DEBUG Processing 101/589 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,173 DEBUG Processing 275/639 atomic regions from SNP 82398 to 82998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,183 DEBUG Processing 105/544 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:26,246 DEBUG Processing 279/669 atomic regions from SNP 83456 to 84056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:26,257 DEBUG Processing 313/706 atomic regions from SNP 93688 to 94288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,286 DEBUG Processing 711/711 atomic regions from SNP 213020 to 213620 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,378 DEBUG Processing 102/589 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,396 DEBUG Processing 276/639 atomic regions from SNP 82698 to 83298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,403 DEBUG Processing 106/544 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:26,456 DEBUG Unique SNPs positions in subchromosome 1: 213621 2025-01-31 09:51:26,475 DEBUG Processing 280/669 atomic regions from SNP 83756 to 84356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:26,486 DEBUG Processing 314/706 atomic regions from SNP 93988 to 94588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,597 DEBUG Processing 103/589 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,614 DEBUG Processing 277/639 atomic regions from SNP 82998 to 83598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,629 DEBUG Processing 107/544 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:26,705 DEBUG Processing 315/706 atomic regions from SNP 94288 to 94888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,729 DEBUG Processing 281/669 atomic regions from SNP 84056 to 84656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:26,807 DEBUG Processing 104/589 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,835 DEBUG Processing 278/639 atomic regions from SNP 83298 to 83898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,836 DEBUG Processing 108/544 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:26,929 DEBUG Processing 316/706 atomic regions from SNP 94588 to 95188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,958 DEBUG Processing 282/669 atomic regions from SNP 84356 to 84956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,021 DEBUG Processing 105/589 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,039 DEBUG Processing 109/544 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,051 DEBUG Processing 279/639 atomic regions from SNP 83598 to 84198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,180 DEBUG Processing 317/706 atomic regions from SNP 94888 to 95488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,183 DEBUG Processing 283/669 atomic regions from SNP 84656 to 85256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,236 DEBUG Processing 106/589 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,245 DEBUG Processing 110/544 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,268 DEBUG Processing 280/639 atomic regions from SNP 83898 to 84498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,404 DEBUG Processing 318/706 atomic regions from SNP 95188 to 95788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,412 DEBUG Processing 284/669 atomic regions from SNP 84956 to 85556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,460 DEBUG Processing 111/544 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,460 DEBUG Processing 107/589 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,493 DEBUG Processing 281/639 atomic regions from SNP 84198 to 84798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,632 DEBUG Processing 319/706 atomic regions from SNP 95488 to 96088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,640 DEBUG Processing 285/669 atomic regions from SNP 85256 to 85856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,662 DEBUG Processing 112/544 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,670 DEBUG Processing 108/589 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,706 DEBUG Processing 282/639 atomic regions from SNP 84498 to 85098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,863 DEBUG Processing 320/706 atomic regions from SNP 95788 to 96388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,865 DEBUG Processing 113/544 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,866 DEBUG Processing 286/669 atomic regions from SNP 85556 to 86156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,879 DEBUG Processing 109/589 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,918 DEBUG Processing 283/639 atomic regions from SNP 84798 to 85398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,075 DEBUG Processing 114/544 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,098 DEBUG Processing 110/589 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,099 DEBUG Processing 287/669 atomic regions from SNP 85856 to 86456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:28,119 DEBUG Processing 321/706 atomic regions from SNP 96088 to 96688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,139 DEBUG Processing 284/639 atomic regions from SNP 85098 to 85698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,282 DEBUG Processing 115/544 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,330 DEBUG Processing 111/589 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,345 DEBUG Processing 288/669 atomic regions from SNP 86156 to 86756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:28,366 DEBUG Processing 285/639 atomic regions from SNP 85398 to 85998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,375 DEBUG Processing 322/706 atomic regions from SNP 96388 to 96988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,479 DEBUG Processing 116/544 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,544 DEBUG Processing 112/589 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,578 DEBUG Processing 289/669 atomic regions from SNP 86456 to 87056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:28,594 DEBUG Processing 286/639 atomic regions from SNP 85698 to 86298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,624 DEBUG Processing 323/706 atomic regions from SNP 96688 to 97288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,683 DEBUG Processing 117/544 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,757 DEBUG Processing 113/589 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,811 DEBUG Processing 290/669 atomic regions from SNP 86756 to 87356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:28,821 DEBUG Processing 287/639 atomic regions from SNP 85998 to 86598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,864 DEBUG Processing 324/706 atomic regions from SNP 96988 to 97588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,897 DEBUG Processing 118/544 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,965 DEBUG Processing 114/589 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,992 DEBUG Subchromosome time: 204.72375587373972, subchromosome SNPs: 213621 2025-01-31 09:51:28,992 DEBUG Estimated BADs: [0.35, 1.04, 0.52, 5.22, 0.52, 1.04, 3.13, 1.04, 2.09, 1.04, 0.52, 0.17, 1.04, 3.13, 1.04, 2.09] SNP counts: [16352, 2971, 9019, 2688, 32406, 4404, 2464, 22891, 17416, 22461, 20031, 4805, 22809, 7899, 15826, 9179] SNP IDs counts: [16352, 2971, 9019, 2688, 32406, 4404, 2464, 22891, 17416, 22461, 20031, 4805, 22809, 7899, 15826, 9179] Critical gap: 603742bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.28Mbp, 14.99Mbp, 20.64Mbp, 22.05Mbp, 40.76Mbp, 43.10Mbp, 44.40Mbp, 56.85Mbp, 66.06Mbp, 78.47Mbp, 90.69Mbp, 93.73Mbp, 106.20Mbp, 110.62Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:51:28,992 DEBUG chr9 time: 204.72426352277398 s 2025-01-31 09:51:29,036 DEBUG Processing 291/669 atomic regions from SNP 87056 to 87656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,039 DEBUG Processing 288/639 atomic regions from SNP 86298 to 86898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:29,096 DEBUG Processing 325/706 atomic regions from SNP 97288 to 97888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,104 DEBUG Processing 119/544 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,134 DEBUG chr9: Fitting background model for 16 segments 2025-01-31 09:51:29,180 DEBUG Processing 115/589 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:29,251 DEBUG Processing 289/639 atomic regions from SNP 86598 to 87198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:29,261 DEBUG Processing 292/669 atomic regions from SNP 87356 to 87956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,313 DEBUG Processing 120/544 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,327 DEBUG Processing 326/706 atomic regions from SNP 97588 to 98188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,396 DEBUG Processing 116/589 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:29,466 DEBUG Processing 290/639 atomic regions from SNP 86898 to 87498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:29,488 DEBUG Processing 293/669 atomic regions from SNP 87656 to 88256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,516 DEBUG Processing 121/544 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,560 DEBUG Processing 327/706 atomic regions from SNP 97888 to 98488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,612 DEBUG Processing 117/589 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:29,691 DEBUG Processing 291/639 atomic regions from SNP 87198 to 87798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:29,722 DEBUG Processing 294/669 atomic regions from SNP 87956 to 88556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,723 DEBUG Processing 122/544 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,807 DEBUG Processing 328/706 atomic regions from SNP 98188 to 98788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,822 DEBUG Processing 118/589 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:29,929 DEBUG Processing 123/544 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,935 DEBUG Processing 292/639 atomic regions from SNP 87498 to 88098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:29,950 DEBUG Processing 295/669 atomic regions from SNP 88256 to 88856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:30,034 DEBUG Processing 119/589 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,052 DEBUG Processing 329/706 atomic regions from SNP 98488 to 99088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,135 DEBUG Processing 124/544 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,169 DEBUG Processing 293/639 atomic regions from SNP 87798 to 88398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,174 DEBUG Processing 296/669 atomic regions from SNP 88556 to 89156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:30,248 DEBUG Processing 120/589 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,278 DEBUG Processing 330/706 atomic regions from SNP 98788 to 99388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,339 DEBUG Processing 125/544 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,382 DEBUG Processing 294/639 atomic regions from SNP 88098 to 88698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,394 DEBUG Processing 297/669 atomic regions from SNP 88856 to 89456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:30,459 DEBUG Processing 121/589 atomic regions from SNP 36120 to 36721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,517 DEBUG Processing 331/706 atomic regions from SNP 99088 to 99688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,543 DEBUG Processing 126/544 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,599 DEBUG Processing 295/639 atomic regions from SNP 88398 to 88998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,618 DEBUG Processing 298/669 atomic regions from SNP 89156 to 89756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:30,667 DEBUG Processing 122/589 atomic regions from SNP 36421 to 37022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,745 DEBUG Processing 127/544 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,749 DEBUG Processing 332/706 atomic regions from SNP 99388 to 99988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,816 DEBUG Processing 296/639 atomic regions from SNP 88698 to 89298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,873 DEBUG Processing 299/669 atomic regions from SNP 89456 to 90056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:30,881 DEBUG Processing 123/589 atomic regions from SNP 36722 to 37323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,946 DEBUG Processing 128/544 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,973 DEBUG Processing 333/706 atomic regions from SNP 99688 to 100288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,029 DEBUG Processing 297/639 atomic regions from SNP 88998 to 89598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,094 DEBUG Processing 124/589 atomic regions from SNP 37023 to 37624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,148 DEBUG Processing 300/669 atomic regions from SNP 89756 to 90356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:31,149 DEBUG Processing 129/544 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,199 DEBUG Processing 334/706 atomic regions from SNP 99988 to 100588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,244 DEBUG Processing 298/639 atomic regions from SNP 89298 to 89898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,310 DEBUG Processing 125/589 atomic regions from SNP 37324 to 37925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,354 DEBUG Processing 130/544 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,400 DEBUG Processing 301/669 atomic regions from SNP 90056 to 90656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:31,425 DEBUG Processing 335/706 atomic regions from SNP 100288 to 100888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,456 DEBUG Processing 299/639 atomic regions from SNP 89598 to 90198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,519 DEBUG Processing 126/589 atomic regions from SNP 37625 to 38226 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,561 DEBUG Processing 131/544 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,639 DEBUG Processing 302/669 atomic regions from SNP 90356 to 90956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:31,660 DEBUG Processing 336/706 atomic regions from SNP 100588 to 101188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,678 DEBUG Processing 300/639 atomic regions from SNP 89898 to 90498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,731 DEBUG Processing 127/589 atomic regions from SNP 37926 to 38527 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,761 DEBUG Processing 132/544 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,879 DEBUG Processing 303/669 atomic regions from SNP 90656 to 91256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:31,894 DEBUG Processing 337/706 atomic regions from SNP 100888 to 101488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,902 DEBUG Processing 301/639 atomic regions from SNP 90198 to 90798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,944 DEBUG Processing 128/589 atomic regions from SNP 38227 to 38828 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,961 DEBUG Processing 133/544 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,127 DEBUG Processing 302/639 atomic regions from SNP 90498 to 91098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:32,129 DEBUG Processing 338/706 atomic regions from SNP 101188 to 101788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,132 DEBUG Processing 304/669 atomic regions from SNP 90956 to 91556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:32,163 DEBUG Processing 134/544 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,164 DEBUG Processing 129/589 atomic regions from SNP 38528 to 39129 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,345 DEBUG Processing 303/639 atomic regions from SNP 90798 to 91398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:32,360 DEBUG Processing 339/706 atomic regions from SNP 101488 to 102088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,370 DEBUG Processing 135/544 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,381 DEBUG Processing 130/589 atomic regions from SNP 38829 to 39430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,388 DEBUG Processing 305/669 atomic regions from SNP 91256 to 91856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:32,563 DEBUG Processing 304/639 atomic regions from SNP 91098 to 91698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:32,573 DEBUG Processing 136/544 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,589 DEBUG Processing 340/706 atomic regions from SNP 101788 to 102388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,592 DEBUG Processing 131/589 atomic regions from SNP 39130 to 39731 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,643 DEBUG Processing 306/669 atomic regions from SNP 91556 to 92156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:32,781 DEBUG Processing 137/544 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,782 DEBUG Processing 305/639 atomic regions from SNP 91398 to 91998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:32,802 DEBUG Processing 132/589 atomic regions from SNP 39431 to 40032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,816 DEBUG Processing 341/706 atomic regions from SNP 102088 to 102688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,878 DEBUG Processing 307/669 atomic regions from SNP 91856 to 92456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:32,989 DEBUG Processing 138/544 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,000 DEBUG Processing 306/639 atomic regions from SNP 91698 to 92298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,015 DEBUG Processing 133/589 atomic regions from SNP 39732 to 40333 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:33,042 DEBUG Processing 342/706 atomic regions from SNP 102388 to 102988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,096 DEBUG Processing 308/669 atomic regions from SNP 92156 to 92756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:33,192 DEBUG Processing 139/544 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,219 DEBUG Processing 307/639 atomic regions from SNP 91998 to 92598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,231 DEBUG Processing 134/589 atomic regions from SNP 40033 to 40634 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:33,293 DEBUG Processing 343/706 atomic regions from SNP 102688 to 103288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,316 DEBUG Processing 309/669 atomic regions from SNP 92456 to 93056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:33,390 DEBUG Processing 140/544 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,430 DEBUG Processing 308/639 atomic regions from SNP 92298 to 92898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,446 DEBUG Processing 135/589 atomic regions from SNP 40334 to 40935 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:33,530 DEBUG Processing 344/706 atomic regions from SNP 102988 to 103588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,547 DEBUG Processing 310/669 atomic regions from SNP 92756 to 93356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:33,607 DEBUG Processing 141/544 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,651 DEBUG Processing 309/639 atomic regions from SNP 92598 to 93198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,662 DEBUG Processing 136/589 atomic regions from SNP 40635 to 41236 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:33,753 DEBUG Processing 345/706 atomic regions from SNP 103288 to 103888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,776 DEBUG Processing 311/669 atomic regions from SNP 93056 to 93656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:33,818 DEBUG Processing 142/544 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,872 DEBUG Processing 310/639 atomic regions from SNP 92898 to 93498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,880 DEBUG Processing 137/589 atomic regions from SNP 40936 to 41537 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:33,979 DEBUG Processing 346/706 atomic regions from SNP 103588 to 104188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,014 DEBUG Processing 312/669 atomic regions from SNP 93356 to 93956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:34,029 DEBUG Processing 143/544 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,097 DEBUG Processing 138/589 atomic regions from SNP 41237 to 41838 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,097 DEBUG Processing 311/639 atomic regions from SNP 93198 to 93798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,207 DEBUG Processing 347/706 atomic regions from SNP 103888 to 104488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,233 DEBUG Processing 144/544 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,239 DEBUG Processing 313/669 atomic regions from SNP 93656 to 94256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:34,319 DEBUG Processing 139/589 atomic regions from SNP 41538 to 42139 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,324 DEBUG Processing 312/639 atomic regions from SNP 93498 to 94098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,442 DEBUG Processing 145/544 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,445 DEBUG Processing 348/706 atomic regions from SNP 104188 to 104788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,468 DEBUG Processing 314/669 atomic regions from SNP 93956 to 94556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:34,536 DEBUG Processing 140/589 atomic regions from SNP 41839 to 42440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,542 DEBUG Processing 313/639 atomic regions from SNP 93798 to 94398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,667 DEBUG Processing 146/544 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,691 DEBUG Processing 349/706 atomic regions from SNP 104488 to 105088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,720 DEBUG Processing 315/669 atomic regions from SNP 94256 to 94856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:34,759 DEBUG Processing 141/589 atomic regions from SNP 42140 to 42741 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,760 DEBUG Processing 314/639 atomic regions from SNP 94098 to 94698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,919 DEBUG Processing 147/544 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,952 DEBUG Processing 350/706 atomic regions from SNP 104788 to 105388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,990 DEBUG Processing 315/639 atomic regions from SNP 94398 to 94998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,996 DEBUG Processing 142/589 atomic regions from SNP 42441 to 43042 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,996 DEBUG Processing 316/669 atomic regions from SNP 94556 to 95156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,135 DEBUG Processing 148/544 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,195 DEBUG Processing 351/706 atomic regions from SNP 105088 to 105688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,221 DEBUG Processing 143/589 atomic regions from SNP 42742 to 43343 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,222 DEBUG Processing 316/639 atomic regions from SNP 94698 to 95298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:35,241 DEBUG Processing 317/669 atomic regions from SNP 94856 to 95456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,340 DEBUG Processing 149/544 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,438 DEBUG Processing 352/706 atomic regions from SNP 105388 to 105988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,442 DEBUG Processing 144/589 atomic regions from SNP 43043 to 43644 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,458 DEBUG Processing 317/639 atomic regions from SNP 94998 to 95598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:35,475 DEBUG Processing 318/669 atomic regions from SNP 95156 to 95756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,540 DEBUG Processing 150/544 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,659 DEBUG Processing 145/589 atomic regions from SNP 43344 to 43945 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,682 DEBUG Processing 353/706 atomic regions from SNP 105688 to 106288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,689 DEBUG Processing 318/639 atomic regions from SNP 95298 to 95898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:35,704 DEBUG Processing 319/669 atomic regions from SNP 95456 to 96056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,744 DEBUG Processing 151/544 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,880 DEBUG Processing 146/589 atomic regions from SNP 43645 to 44246 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,920 DEBUG Processing 319/639 atomic regions from SNP 95598 to 96198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:35,922 DEBUG Processing 354/706 atomic regions from SNP 105988 to 106588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,934 DEBUG Processing 320/669 atomic regions from SNP 95756 to 96356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,956 DEBUG Processing 152/544 atomic regions from SNP 45451 to 46052 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,097 DEBUG Processing 147/589 atomic regions from SNP 43946 to 44547 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,150 DEBUG Processing 320/639 atomic regions from SNP 95898 to 96498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,165 DEBUG Processing 355/706 atomic regions from SNP 106288 to 106888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,184 DEBUG Processing 153/544 atomic regions from SNP 45752 to 46353 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,192 DEBUG Processing 321/669 atomic regions from SNP 96056 to 96656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:36,316 DEBUG Processing 148/589 atomic regions from SNP 44247 to 44848 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,371 DEBUG Processing 321/639 atomic regions from SNP 96198 to 96798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,396 DEBUG Processing 154/544 atomic regions from SNP 46053 to 46654 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,400 DEBUG Processing 356/706 atomic regions from SNP 106588 to 107188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,453 DEBUG Processing 322/669 atomic regions from SNP 96356 to 96956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:36,529 DEBUG Processing 149/589 atomic regions from SNP 44548 to 45149 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,598 DEBUG Processing 322/639 atomic regions from SNP 96498 to 97098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,611 DEBUG Processing 155/544 atomic regions from SNP 46354 to 46955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,635 DEBUG Processing 357/706 atomic regions from SNP 106888 to 107488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,690 DEBUG Processing 323/669 atomic regions from SNP 96656 to 97256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:36,736 DEBUG Processing 150/589 atomic regions from SNP 44849 to 45450 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,823 DEBUG Processing 323/639 atomic regions from SNP 96798 to 97398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,829 DEBUG Processing 156/544 atomic regions from SNP 46655 to 47256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,873 DEBUG Processing 358/706 atomic regions from SNP 107188 to 107788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,935 DEBUG Processing 324/669 atomic regions from SNP 96956 to 97556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:36,938 DEBUG Processing 151/589 atomic regions from SNP 45150 to 45751 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,044 DEBUG Processing 157/544 atomic regions from SNP 46956 to 47557 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,050 DEBUG Processing 324/639 atomic regions from SNP 97098 to 97698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,109 DEBUG Processing 359/706 atomic regions from SNP 107488 to 108088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,151 DEBUG Processing 152/589 atomic regions from SNP 45451 to 46052 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,167 DEBUG Processing 325/669 atomic regions from SNP 97256 to 97856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:37,264 DEBUG Processing 158/544 atomic regions from SNP 47257 to 47858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,287 DEBUG Processing 325/639 atomic regions from SNP 97398 to 97998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,352 DEBUG Processing 360/706 atomic regions from SNP 107788 to 108388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,369 DEBUG Processing 153/589 atomic regions from SNP 45752 to 46353 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,402 DEBUG Processing 326/669 atomic regions from SNP 97556 to 98156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:37,481 DEBUG Processing 159/544 atomic regions from SNP 47558 to 48159 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,515 DEBUG Processing 326/639 atomic regions from SNP 97698 to 98298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,581 DEBUG Processing 154/589 atomic regions from SNP 46053 to 46654 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,601 DEBUG Processing 361/706 atomic regions from SNP 108088 to 108688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,618 DEBUG Processing 327/669 atomic regions from SNP 97856 to 98456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:37,690 DEBUG Processing 160/544 atomic regions from SNP 47859 to 48460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,744 DEBUG Processing 327/639 atomic regions from SNP 97998 to 98598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,793 DEBUG Processing 155/589 atomic regions from SNP 46354 to 46955 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,840 DEBUG Processing 362/706 atomic regions from SNP 108388 to 108988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,843 DEBUG Processing 328/669 atomic regions from SNP 98156 to 98756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:37,899 DEBUG Processing 161/544 atomic regions from SNP 48160 to 48761 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,976 DEBUG Processing 328/639 atomic regions from SNP 98298 to 98898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,015 DEBUG Processing 156/589 atomic regions from SNP 46655 to 47256 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,069 DEBUG Processing 329/669 atomic regions from SNP 98456 to 99056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:38,081 DEBUG Processing 363/706 atomic regions from SNP 108688 to 109288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,109 DEBUG Processing 162/544 atomic regions from SNP 48461 to 49062 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,199 DEBUG Processing 329/639 atomic regions from SNP 98598 to 99198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,228 DEBUG Processing 157/589 atomic regions from SNP 46956 to 47557 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,294 DEBUG Processing 330/669 atomic regions from SNP 98756 to 99356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:38,320 DEBUG Processing 364/706 atomic regions from SNP 108988 to 109588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,324 DEBUG Processing 163/544 atomic regions from SNP 48762 to 49363 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,415 DEBUG Processing 330/639 atomic regions from SNP 98898 to 99498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,439 DEBUG Processing 158/589 atomic regions from SNP 47257 to 47858 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,533 DEBUG Processing 331/669 atomic regions from SNP 99056 to 99656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:38,536 DEBUG Processing 164/544 atomic regions from SNP 49063 to 49664 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,556 DEBUG Processing 365/706 atomic regions from SNP 109288 to 109888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,631 DEBUG Processing 331/639 atomic regions from SNP 99198 to 99798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,636 DEBUG Processing 159/589 atomic regions from SNP 47558 to 48159 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,749 DEBUG Processing 165/544 atomic regions from SNP 49364 to 49965 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,774 DEBUG Processing 332/669 atomic regions from SNP 99356 to 99956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:38,797 DEBUG Processing 366/706 atomic regions from SNP 109588 to 110188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,840 DEBUG Processing 160/589 atomic regions from SNP 47859 to 48460 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,853 DEBUG Processing 332/639 atomic regions from SNP 99498 to 100098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,961 DEBUG Processing 166/544 atomic regions from SNP 49665 to 50266 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,995 DEBUG Processing 333/669 atomic regions from SNP 99656 to 100256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:39,036 DEBUG Processing 367/706 atomic regions from SNP 109888 to 110488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,043 DEBUG Processing 161/589 atomic regions from SNP 48160 to 48761 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,082 DEBUG Processing 333/639 atomic regions from SNP 99798 to 100398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,168 DEBUG Processing 167/544 atomic regions from SNP 49966 to 50567 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:39,209 DEBUG Processing 334/669 atomic regions from SNP 99956 to 100556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:39,246 DEBUG Processing 162/589 atomic regions from SNP 48461 to 49062 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,276 DEBUG Processing 368/706 atomic regions from SNP 110188 to 110788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,308 DEBUG Processing 334/639 atomic regions from SNP 100098 to 100698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,382 DEBUG Processing 168/544 atomic regions from SNP 50267 to 50868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:39,428 DEBUG Processing 335/669 atomic regions from SNP 100256 to 100856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:39,451 DEBUG Processing 163/589 atomic regions from SNP 48762 to 49363 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,519 DEBUG Processing 369/706 atomic regions from SNP 110488 to 111088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,541 DEBUG Processing 335/639 atomic regions from SNP 100398 to 100998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,593 DEBUG Processing 169/544 atomic regions from SNP 50568 to 51169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:39,659 DEBUG Processing 336/669 atomic regions from SNP 100556 to 101156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:39,664 DEBUG Processing 164/589 atomic regions from SNP 49063 to 49664 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,758 DEBUG Processing 370/706 atomic regions from SNP 110788 to 111388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,771 DEBUG Processing 336/639 atomic regions from SNP 100698 to 101298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,814 DEBUG Processing 170/544 atomic regions from SNP 50869 to 51470 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:39,877 DEBUG Processing 165/589 atomic regions from SNP 49364 to 49965 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,886 DEBUG Processing 337/669 atomic regions from SNP 100856 to 101456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:39,993 DEBUG Processing 371/706 atomic regions from SNP 111088 to 111688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,997 DEBUG Processing 337/639 atomic regions from SNP 100998 to 101598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,027 DEBUG Processing 171/544 atomic regions from SNP 51170 to 51771 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,088 DEBUG Processing 166/589 atomic regions from SNP 49665 to 50266 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,110 DEBUG Processing 338/669 atomic regions from SNP 101156 to 101756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:40,218 DEBUG Processing 338/639 atomic regions from SNP 101298 to 101898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,226 DEBUG Processing 372/706 atomic regions from SNP 111388 to 111988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,238 DEBUG Processing 172/544 atomic regions from SNP 51471 to 52072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,289 DEBUG Processing 167/589 atomic regions from SNP 49966 to 50567 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,328 DEBUG Processing 339/669 atomic regions from SNP 101456 to 102056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:40,443 DEBUG Processing 339/639 atomic regions from SNP 101598 to 102198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,463 DEBUG Processing 373/706 atomic regions from SNP 111688 to 112288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,468 DEBUG Processing 173/544 atomic regions from SNP 51772 to 52373 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,492 DEBUG Processing 168/589 atomic regions from SNP 50267 to 50868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,548 DEBUG Processing 340/669 atomic regions from SNP 101756 to 102356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:40,673 DEBUG Processing 340/639 atomic regions from SNP 101898 to 102498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,702 DEBUG Processing 169/589 atomic regions from SNP 50568 to 51169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,706 DEBUG Processing 374/706 atomic regions from SNP 111988 to 112588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,709 DEBUG Processing 174/544 atomic regions from SNP 52073 to 52674 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,771 DEBUG Processing 341/669 atomic regions from SNP 102056 to 102656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:40,903 DEBUG Processing 341/639 atomic regions from SNP 102198 to 102798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,909 DEBUG Processing 170/589 atomic regions from SNP 50869 to 51470 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,932 DEBUG Processing 175/544 atomic regions from SNP 52374 to 52975 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,948 DEBUG Processing 375/706 atomic regions from SNP 112288 to 112888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,987 DEBUG Processing 342/669 atomic regions from SNP 102356 to 102956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,109 DEBUG Processing 171/589 atomic regions from SNP 51170 to 51771 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:41,126 DEBUG Processing 342/639 atomic regions from SNP 102498 to 103098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:41,162 DEBUG Processing 176/544 atomic regions from SNP 52675 to 53276 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:41,193 DEBUG Processing 376/706 atomic regions from SNP 112588 to 113188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,206 DEBUG Processing 343/669 atomic regions from SNP 102656 to 103256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,319 DEBUG Processing 172/589 atomic regions from SNP 51471 to 52072 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:41,356 DEBUG Processing 343/639 atomic regions from SNP 102798 to 103398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:41,398 DEBUG Processing 177/544 atomic regions from SNP 52976 to 53577 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:41,427 DEBUG Processing 344/669 atomic regions from SNP 102956 to 103556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,443 DEBUG Processing 377/706 atomic regions from SNP 112888 to 113488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,538 DEBUG Processing 173/589 atomic regions from SNP 51772 to 52373 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:41,590 DEBUG Processing 344/639 atomic regions from SNP 103098 to 103698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:41,614 DEBUG Processing 178/544 atomic regions from SNP 53277 to 53878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:41,637 DEBUG Processing 345/669 atomic regions from SNP 103256 to 103856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,683 DEBUG Processing 378/706 atomic regions from SNP 113188 to 113788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,745 DEBUG Processing 174/589 atomic regions from SNP 52073 to 52674 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:41,829 DEBUG Processing 179/544 atomic regions from SNP 53578 to 54178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:41,838 DEBUG Processing 345/639 atomic regions from SNP 103398 to 103998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:41,856 DEBUG Processing 346/669 atomic regions from SNP 103556 to 104156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,918 DEBUG Processing 379/706 atomic regions from SNP 113488 to 114088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,953 DEBUG Processing 175/589 atomic regions from SNP 52374 to 52975 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,037 DEBUG Processing 180/544 atomic regions from SNP 53878 to 54478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,074 DEBUG Processing 346/639 atomic regions from SNP 103698 to 104298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,082 DEBUG Processing 347/669 atomic regions from SNP 103856 to 104456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:42,161 DEBUG Processing 380/706 atomic regions from SNP 113788 to 114388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,162 DEBUG Processing 176/589 atomic regions from SNP 52675 to 53276 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,241 DEBUG Processing 181/544 atomic regions from SNP 54178 to 54778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,296 DEBUG Processing 347/639 atomic regions from SNP 103998 to 104598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,304 DEBUG Processing 348/669 atomic regions from SNP 104156 to 104756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:42,371 DEBUG Processing 177/589 atomic regions from SNP 52976 to 53577 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,398 DEBUG Processing 381/706 atomic regions from SNP 114088 to 114688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,452 DEBUG Processing 182/544 atomic regions from SNP 54478 to 55078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,521 DEBUG Processing 348/639 atomic regions from SNP 104298 to 104898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,532 DEBUG Processing 349/669 atomic regions from SNP 104456 to 105056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:42,585 DEBUG Processing 178/589 atomic regions from SNP 53277 to 53878 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,654 DEBUG Processing 382/706 atomic regions from SNP 114388 to 114988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,663 DEBUG Processing 183/544 atomic regions from SNP 54778 to 55378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,751 DEBUG Processing 349/639 atomic regions from SNP 104598 to 105198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,776 DEBUG Processing 350/669 atomic regions from SNP 104756 to 105356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:42,798 DEBUG Processing 179/589 atomic regions from SNP 53578 to 54179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,879 DEBUG Processing 184/544 atomic regions from SNP 55078 to 55678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,928 DEBUG Processing 383/706 atomic regions from SNP 114688 to 115288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,983 DEBUG Processing 350/639 atomic regions from SNP 104898 to 105498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,013 DEBUG Processing 351/669 atomic regions from SNP 105056 to 105656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:43,016 DEBUG Processing 180/589 atomic regions from SNP 53879 to 54480 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,092 DEBUG Processing 185/544 atomic regions from SNP 55378 to 55978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,182 DEBUG Processing 384/706 atomic regions from SNP 114988 to 115588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,211 DEBUG Processing 351/639 atomic regions from SNP 105198 to 105798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,228 DEBUG Processing 181/589 atomic regions from SNP 54180 to 54781 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,241 DEBUG Processing 352/669 atomic regions from SNP 105356 to 105956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:43,296 DEBUG Processing 186/544 atomic regions from SNP 55678 to 56278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,439 DEBUG Processing 182/589 atomic regions from SNP 54481 to 55082 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,440 DEBUG Processing 352/639 atomic regions from SNP 105498 to 106098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,451 DEBUG Processing 385/706 atomic regions from SNP 115288 to 115888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,470 DEBUG Processing 353/669 atomic regions from SNP 105656 to 106256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:43,505 DEBUG Processing 187/544 atomic regions from SNP 55978 to 56578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,647 DEBUG Processing 183/589 atomic regions from SNP 54782 to 55383 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,674 DEBUG Processing 353/639 atomic regions from SNP 105798 to 106398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,714 DEBUG Processing 354/669 atomic regions from SNP 105956 to 106556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:43,721 DEBUG Processing 386/706 atomic regions from SNP 115588 to 116188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,721 DEBUG Processing 188/544 atomic regions from SNP 56278 to 56878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,851 DEBUG Processing 184/589 atomic regions from SNP 55083 to 55684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,912 DEBUG Processing 354/639 atomic regions from SNP 106098 to 106698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,948 DEBUG Processing 189/544 atomic regions from SNP 56578 to 57178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,963 DEBUG Processing 355/669 atomic regions from SNP 106256 to 106856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,007 DEBUG Processing 387/706 atomic regions from SNP 115888 to 116488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,058 DEBUG Processing 185/589 atomic regions from SNP 55384 to 55985 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,143 DEBUG Processing 355/639 atomic regions from SNP 106398 to 106998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,163 DEBUG Processing 190/544 atomic regions from SNP 56878 to 57478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,194 DEBUG Processing 356/669 atomic regions from SNP 106556 to 107156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,269 DEBUG Processing 186/589 atomic regions from SNP 55685 to 56286 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,286 DEBUG Processing 388/706 atomic regions from SNP 116188 to 116788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,372 DEBUG Processing 191/544 atomic regions from SNP 57178 to 57778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,385 DEBUG Processing 356/639 atomic regions from SNP 106698 to 107298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,411 DEBUG Processing 357/669 atomic regions from SNP 106856 to 107456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,480 DEBUG Processing 187/589 atomic regions from SNP 55986 to 56587 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,556 DEBUG Processing 389/706 atomic regions from SNP 116488 to 117088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,586 DEBUG Processing 192/544 atomic regions from SNP 57478 to 58078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,621 DEBUG Processing 357/639 atomic regions from SNP 106998 to 107598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,628 DEBUG Processing 358/669 atomic regions from SNP 107156 to 107756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,686 DEBUG Processing 188/589 atomic regions from SNP 56287 to 56888 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,797 DEBUG Processing 390/706 atomic regions from SNP 116788 to 117388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,798 DEBUG Processing 193/544 atomic regions from SNP 57778 to 58378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,852 DEBUG Processing 358/639 atomic regions from SNP 107298 to 107898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,854 DEBUG Processing 359/669 atomic regions from SNP 107456 to 108056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,897 DEBUG Processing 189/589 atomic regions from SNP 56588 to 57189 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,030 DEBUG Processing 194/544 atomic regions from SNP 58078 to 58678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,056 DEBUG Processing 391/706 atomic regions from SNP 117088 to 117688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,093 DEBUG Processing 359/639 atomic regions from SNP 107598 to 108198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:45,094 DEBUG Processing 360/669 atomic regions from SNP 107756 to 108356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,116 DEBUG Processing 190/589 atomic regions from SNP 56889 to 57490 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,270 DEBUG Processing 195/544 atomic regions from SNP 58378 to 58978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,325 DEBUG Processing 392/706 atomic regions from SNP 117388 to 117988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,325 DEBUG Processing 360/639 atomic regions from SNP 107898 to 108498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:45,326 DEBUG Processing 361/669 atomic regions from SNP 108056 to 108656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,343 DEBUG Processing 191/589 atomic regions from SNP 57190 to 57791 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,489 DEBUG Processing 196/544 atomic regions from SNP 58678 to 59278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,563 DEBUG Processing 362/669 atomic regions from SNP 108356 to 108956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,576 DEBUG Processing 192/589 atomic regions from SNP 57491 to 58092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,577 DEBUG Processing 361/639 atomic regions from SNP 108198 to 108798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:45,601 DEBUG Processing 393/706 atomic regions from SNP 117688 to 118288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,707 DEBUG Processing 197/544 atomic regions from SNP 58978 to 59578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,788 DEBUG Processing 363/669 atomic regions from SNP 108656 to 109256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,807 DEBUG Processing 362/639 atomic regions from SNP 108498 to 109098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:45,820 DEBUG Processing 193/589 atomic regions from SNP 57792 to 58392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,841 DEBUG Processing 394/706 atomic regions from SNP 117988 to 118588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,931 DEBUG Processing 198/544 atomic regions from SNP 59278 to 59878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,018 DEBUG Processing 364/669 atomic regions from SNP 108956 to 109556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,040 DEBUG Processing 363/639 atomic regions from SNP 108798 to 109398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,055 DEBUG Processing 194/589 atomic regions from SNP 58092 to 58692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,082 DEBUG Processing 395/706 atomic regions from SNP 118288 to 118888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,146 DEBUG Processing 199/544 atomic regions from SNP 59578 to 60178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,240 DEBUG Processing 365/669 atomic regions from SNP 109256 to 109856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,257 DEBUG Processing 195/589 atomic regions from SNP 58392 to 58992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,268 DEBUG Processing 364/639 atomic regions from SNP 109098 to 109698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,317 DEBUG Processing 396/706 atomic regions from SNP 118588 to 119188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,360 DEBUG Processing 200/544 atomic regions from SNP 59878 to 60478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,470 DEBUG Processing 366/669 atomic regions from SNP 109556 to 110156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,476 DEBUG Processing 196/589 atomic regions from SNP 58692 to 59292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,506 DEBUG Processing 365/639 atomic regions from SNP 109398 to 109998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,563 DEBUG Processing 397/706 atomic regions from SNP 118888 to 119488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,575 DEBUG Processing 201/544 atomic regions from SNP 60178 to 60778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,694 DEBUG Processing 197/589 atomic regions from SNP 58992 to 59592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,694 DEBUG Processing 367/669 atomic regions from SNP 109856 to 110456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,739 DEBUG Processing 366/639 atomic regions from SNP 109698 to 110298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,792 DEBUG Processing 202/544 atomic regions from SNP 60478 to 61078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,809 DEBUG Processing 398/706 atomic regions from SNP 119188 to 119788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,905 DEBUG Processing 198/589 atomic regions from SNP 59292 to 59892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,917 DEBUG Processing 368/669 atomic regions from SNP 110156 to 110756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,969 DEBUG Processing 367/639 atomic regions from SNP 109998 to 110598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,011 DEBUG Processing 203/544 atomic regions from SNP 60778 to 61378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,055 DEBUG Processing 399/706 atomic regions from SNP 119488 to 120088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,111 DEBUG Processing 199/589 atomic regions from SNP 59592 to 60192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:47,134 DEBUG Processing 369/669 atomic regions from SNP 110456 to 111056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,197 DEBUG Processing 368/639 atomic regions from SNP 110298 to 110898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,225 DEBUG Processing 204/544 atomic regions from SNP 61078 to 61678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,300 DEBUG Processing 400/706 atomic regions from SNP 119788 to 120388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,316 DEBUG Processing 200/589 atomic regions from SNP 59892 to 60492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:47,352 DEBUG Processing 370/669 atomic regions from SNP 110756 to 111356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,426 DEBUG Processing 369/639 atomic regions from SNP 110598 to 111198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,443 DEBUG Processing 205/544 atomic regions from SNP 61378 to 61978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,524 DEBUG Processing 201/589 atomic regions from SNP 60192 to 60792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:47,547 DEBUG Processing 401/706 atomic regions from SNP 120088 to 120688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,574 DEBUG Processing 371/669 atomic regions from SNP 111056 to 111656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,659 DEBUG Processing 370/639 atomic regions from SNP 110898 to 111498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,667 DEBUG Processing 206/544 atomic regions from SNP 61678 to 62278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,734 DEBUG Processing 202/589 atomic regions from SNP 60492 to 61092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:47,786 DEBUG Processing 402/706 atomic regions from SNP 120388 to 120988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,793 DEBUG Processing 372/669 atomic regions from SNP 111356 to 111956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,894 DEBUG Processing 371/639 atomic regions from SNP 111198 to 111798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,896 DEBUG Processing 207/544 atomic regions from SNP 61978 to 62578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,969 DEBUG Processing 203/589 atomic regions from SNP 60792 to 61392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,010 DEBUG Processing 373/669 atomic regions from SNP 111656 to 112256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,034 DEBUG Processing 403/706 atomic regions from SNP 120688 to 121288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,110 DEBUG Processing 208/544 atomic regions from SNP 62278 to 62878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:48,125 DEBUG Processing 372/639 atomic regions from SNP 111498 to 112098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:48,196 DEBUG Processing 204/589 atomic regions from SNP 61092 to 61692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,226 DEBUG Processing 374/669 atomic regions from SNP 111956 to 112556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,286 DEBUG Processing 404/706 atomic regions from SNP 120988 to 121588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,330 DEBUG Processing 209/544 atomic regions from SNP 62578 to 63178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:48,360 DEBUG Processing 373/639 atomic regions from SNP 111798 to 112398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:48,416 DEBUG Processing 205/589 atomic regions from SNP 61392 to 61992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,452 DEBUG Processing 375/669 atomic regions from SNP 112256 to 112856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,527 DEBUG Processing 405/706 atomic regions from SNP 121288 to 121888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,561 DEBUG Processing 210/544 atomic regions from SNP 62878 to 63478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:48,601 DEBUG Processing 374/639 atomic regions from SNP 112098 to 112698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:48,632 DEBUG Processing 206/589 atomic regions from SNP 61692 to 62292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,697 DEBUG Processing 376/669 atomic regions from SNP 112556 to 113156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,765 DEBUG Processing 406/706 atomic regions from SNP 121588 to 122188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,779 DEBUG Processing 211/544 atomic regions from SNP 63178 to 63778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:48,835 DEBUG Processing 375/639 atomic regions from SNP 112398 to 112998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:48,853 DEBUG Processing 207/589 atomic regions from SNP 61992 to 62592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,924 DEBUG Processing 377/669 atomic regions from SNP 112856 to 113456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,997 DEBUG Processing 212/544 atomic regions from SNP 63478 to 64078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,008 DEBUG Processing 407/706 atomic regions from SNP 121888 to 122488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,063 DEBUG Processing 208/589 atomic regions from SNP 62292 to 62892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,072 DEBUG Processing 376/639 atomic regions from SNP 112698 to 113298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:49,147 DEBUG Processing 378/669 atomic regions from SNP 113156 to 113756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,210 DEBUG Processing 213/544 atomic regions from SNP 63778 to 64378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,254 DEBUG Processing 408/706 atomic regions from SNP 122188 to 122788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,269 DEBUG Processing 209/589 atomic regions from SNP 62592 to 63192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,308 DEBUG Processing 377/639 atomic regions from SNP 112998 to 113598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:49,373 DEBUG Processing 379/669 atomic regions from SNP 113456 to 114056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,421 DEBUG Processing 214/544 atomic regions from SNP 64078 to 64678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,474 DEBUG Processing 210/589 atomic regions from SNP 62892 to 63492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,494 DEBUG Processing 409/706 atomic regions from SNP 122488 to 123088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,560 DEBUG Processing 378/639 atomic regions from SNP 113298 to 113898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:49,597 DEBUG Processing 380/669 atomic regions from SNP 113756 to 114356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,635 DEBUG Processing 215/544 atomic regions from SNP 64378 to 64978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,686 DEBUG Processing 211/589 atomic regions from SNP 63192 to 63792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,733 DEBUG Processing 410/706 atomic regions from SNP 122788 to 123388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,799 DEBUG Processing 379/639 atomic regions from SNP 113598 to 114198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:49,819 DEBUG Processing 381/669 atomic regions from SNP 114056 to 114656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,859 DEBUG Processing 216/544 atomic regions from SNP 64678 to 65278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,905 DEBUG Processing 212/589 atomic regions from SNP 63492 to 64092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,967 DEBUG Processing 411/706 atomic regions from SNP 123088 to 123688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,026 DEBUG Processing 380/639 atomic regions from SNP 113898 to 114498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,027 DEBUG Processing 382/669 atomic regions from SNP 114356 to 114956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,077 DEBUG Processing 217/544 atomic regions from SNP 64978 to 65578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,126 DEBUG Processing 213/589 atomic regions from SNP 63792 to 64392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,204 DEBUG Processing 412/706 atomic regions from SNP 123388 to 123988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,239 DEBUG Processing 383/669 atomic regions from SNP 114656 to 115256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,255 DEBUG Processing 381/639 atomic regions from SNP 114198 to 114798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,290 DEBUG Processing 218/544 atomic regions from SNP 65278 to 65878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,334 DEBUG Processing 214/589 atomic regions from SNP 64092 to 64692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,446 DEBUG Processing 413/706 atomic regions from SNP 123688 to 124288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,461 DEBUG Processing 384/669 atomic regions from SNP 114956 to 115556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,494 DEBUG Processing 382/639 atomic regions from SNP 114498 to 115098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,512 DEBUG Processing 219/544 atomic regions from SNP 65578 to 66178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,538 DEBUG Processing 215/589 atomic regions from SNP 64392 to 64992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,689 DEBUG Processing 414/706 atomic regions from SNP 123988 to 124588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,694 DEBUG Processing 385/669 atomic regions from SNP 115256 to 115856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,732 DEBUG Processing 383/639 atomic regions from SNP 114798 to 115398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,736 DEBUG Processing 220/544 atomic regions from SNP 65878 to 66478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,749 DEBUG Processing 216/589 atomic regions from SNP 64692 to 65292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,927 DEBUG Processing 386/669 atomic regions from SNP 115556 to 116156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,939 DEBUG Processing 415/706 atomic regions from SNP 124288 to 124888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,959 DEBUG Processing 221/544 atomic regions from SNP 66178 to 66778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,966 DEBUG Processing 217/589 atomic regions from SNP 64992 to 65592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,985 DEBUG Processing 384/639 atomic regions from SNP 115098 to 115698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:51,155 DEBUG Processing 387/669 atomic regions from SNP 115856 to 116456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,181 DEBUG Processing 222/544 atomic regions from SNP 66478 to 67078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:51,182 DEBUG Processing 416/706 atomic regions from SNP 124588 to 125188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,188 DEBUG Processing 218/589 atomic regions from SNP 65292 to 65892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:51,227 DEBUG Processing 385/639 atomic regions from SNP 115398 to 115998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:51,389 DEBUG Processing 388/669 atomic regions from SNP 116156 to 116756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,402 DEBUG Processing 223/544 atomic regions from SNP 66778 to 67378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:51,409 DEBUG Processing 219/589 atomic regions from SNP 65592 to 66192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:51,454 DEBUG Processing 417/706 atomic regions from SNP 124888 to 125488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,465 DEBUG Processing 386/639 atomic regions from SNP 115698 to 116298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:51,625 DEBUG Processing 224/544 atomic regions from SNP 67078 to 67678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:51,626 DEBUG Processing 389/669 atomic regions from SNP 116456 to 117056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,633 DEBUG Processing 220/589 atomic regions from SNP 65892 to 66492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:51,708 DEBUG Processing 418/706 atomic regions from SNP 125188 to 125788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,708 DEBUG Processing 387/639 atomic regions from SNP 115998 to 116598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:51,839 DEBUG Processing 225/544 atomic regions from SNP 67378 to 67978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:51,850 DEBUG Processing 221/589 atomic regions from SNP 66192 to 66792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:51,853 DEBUG Processing 390/669 atomic regions from SNP 116756 to 117356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,958 DEBUG Processing 388/639 atomic regions from SNP 116298 to 116898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:51,967 DEBUG Processing 419/706 atomic regions from SNP 125488 to 126088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,053 DEBUG Processing 226/544 atomic regions from SNP 67678 to 68278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:52,061 DEBUG Processing 222/589 atomic regions from SNP 66492 to 67092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:52,076 DEBUG Processing 391/669 atomic regions from SNP 117056 to 117656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,224 DEBUG Processing 389/639 atomic regions from SNP 116598 to 117198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:52,232 DEBUG Processing 420/706 atomic regions from SNP 125788 to 126388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,272 DEBUG Processing 227/544 atomic regions from SNP 67978 to 68578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:52,291 DEBUG Processing 223/589 atomic regions from SNP 66792 to 67392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:52,307 DEBUG Processing 392/669 atomic regions from SNP 117356 to 117956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,494 DEBUG Processing 390/639 atomic regions from SNP 116898 to 117498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:52,503 DEBUG Processing 228/544 atomic regions from SNP 68278 to 68878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:52,510 DEBUG Processing 421/706 atomic regions from SNP 126088 to 126688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,522 DEBUG Processing 224/589 atomic regions from SNP 67092 to 67692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:52,556 DEBUG Processing 393/669 atomic regions from SNP 117656 to 118256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,728 DEBUG Processing 229/544 atomic regions from SNP 68578 to 69178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:52,752 DEBUG Processing 391/639 atomic regions from SNP 117198 to 117798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:52,753 DEBUG Processing 225/589 atomic regions from SNP 67392 to 67992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:52,788 DEBUG Processing 422/706 atomic regions from SNP 126388 to 126988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,794 DEBUG Processing 394/669 atomic regions from SNP 117956 to 118556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,936 DEBUG Processing 230/544 atomic regions from SNP 68878 to 69478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:52,967 DEBUG Processing 226/589 atomic regions from SNP 67692 to 68292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:52,996 DEBUG Processing 392/639 atomic regions from SNP 117498 to 118098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:53,018 DEBUG Processing 395/669 atomic regions from SNP 118256 to 118856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,039 DEBUG Processing 423/706 atomic regions from SNP 126688 to 127288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,142 DEBUG Processing 231/544 atomic regions from SNP 69178 to 69778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:53,185 DEBUG Processing 227/589 atomic regions from SNP 67992 to 68592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,236 DEBUG Processing 393/639 atomic regions from SNP 117798 to 118398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:53,245 DEBUG Processing 396/669 atomic regions from SNP 118556 to 119156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,299 DEBUG Processing 424/706 atomic regions from SNP 126988 to 127588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,348 DEBUG Processing 232/544 atomic regions from SNP 69478 to 70078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:53,398 DEBUG Processing 228/589 atomic regions from SNP 68292 to 68892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,474 DEBUG Processing 397/669 atomic regions from SNP 118856 to 119456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,472 DEBUG Processing 394/639 atomic regions from SNP 118098 to 118698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:53,552 DEBUG Processing 425/706 atomic regions from SNP 127288 to 127888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,581 DEBUG Processing 233/544 atomic regions from SNP 69778 to 70378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:53,630 DEBUG Processing 229/589 atomic regions from SNP 68592 to 69192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,718 DEBUG Processing 395/639 atomic regions from SNP 118398 to 118998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:53,746 DEBUG Processing 398/669 atomic regions from SNP 119156 to 119756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,801 DEBUG Processing 426/706 atomic regions from SNP 127588 to 128188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,814 DEBUG Processing 234/544 atomic regions from SNP 70078 to 70678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:53,853 DEBUG Processing 230/589 atomic regions from SNP 68892 to 69492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,935 DEBUG Processing 396/639 atomic regions from SNP 118698 to 119298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:53,993 DEBUG Processing 399/669 atomic regions from SNP 119456 to 120056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,036 DEBUG Processing 235/544 atomic regions from SNP 70378 to 70978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,045 DEBUG Processing 427/706 atomic regions from SNP 127888 to 128488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,069 DEBUG Processing 231/589 atomic regions from SNP 69192 to 69792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,158 DEBUG Processing 397/639 atomic regions from SNP 118998 to 119598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:54,241 DEBUG Processing 400/669 atomic regions from SNP 119756 to 120356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,244 DEBUG Processing 236/544 atomic regions from SNP 70678 to 71278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,280 DEBUG Processing 232/589 atomic regions from SNP 69492 to 70092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,283 DEBUG Processing 428/706 atomic regions from SNP 128188 to 128788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,385 DEBUG Processing 398/639 atomic regions from SNP 119298 to 119898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:54,448 DEBUG Processing 237/544 atomic regions from SNP 70978 to 71578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,477 DEBUG Processing 401/669 atomic regions from SNP 120056 to 120656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,487 DEBUG Processing 233/589 atomic regions from SNP 69792 to 70392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,516 DEBUG Processing 429/706 atomic regions from SNP 128488 to 129088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,615 DEBUG Processing 399/639 atomic regions from SNP 119598 to 120198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:54,657 DEBUG Processing 238/544 atomic regions from SNP 71278 to 71878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,702 DEBUG Processing 234/589 atomic regions from SNP 70092 to 70692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,715 DEBUG Processing 402/669 atomic regions from SNP 120356 to 120956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,752 DEBUG Processing 430/706 atomic regions from SNP 128788 to 129388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,854 DEBUG Processing 400/639 atomic regions from SNP 119898 to 120498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:54,877 DEBUG Processing 239/544 atomic regions from SNP 71578 to 72178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,923 DEBUG Processing 235/589 atomic regions from SNP 70392 to 70992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,968 DEBUG Processing 403/669 atomic regions from SNP 120656 to 121256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,989 DEBUG Processing 431/706 atomic regions from SNP 129088 to 129688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,091 DEBUG Processing 401/639 atomic regions from SNP 120198 to 120798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:55,095 DEBUG Processing 240/544 atomic regions from SNP 71878 to 72478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,150 DEBUG Processing 236/589 atomic regions from SNP 70692 to 71292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,214 DEBUG Processing 404/669 atomic regions from SNP 120956 to 121556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,231 DEBUG Processing 432/706 atomic regions from SNP 129388 to 129988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,314 DEBUG Processing 241/544 atomic regions from SNP 72178 to 72778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,326 DEBUG Processing 402/639 atomic regions from SNP 120498 to 121098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:55,369 DEBUG Processing 237/589 atomic regions from SNP 70992 to 71592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,443 DEBUG Processing 405/669 atomic regions from SNP 121256 to 121856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,469 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:51:55,489 DEBUG Processing 433/706 atomic regions from SNP 129688 to 130288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,535 DEBUG Processing 242/544 atomic regions from SNP 72478 to 73078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,567 DEBUG Processing 403/639 atomic regions from SNP 120798 to 121398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:55,580 DEBUG Processing 238/589 atomic regions from SNP 71292 to 71892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,673 DEBUG Processing 406/669 atomic regions from SNP 121556 to 122156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,757 DEBUG Processing 243/544 atomic regions from SNP 72778 to 73378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,759 DEBUG Processing 434/706 atomic regions from SNP 129988 to 130588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,783 DEBUG Processing 239/589 atomic regions from SNP 71592 to 72192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,804 DEBUG Processing 404/639 atomic regions from SNP 121098 to 121698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:55,900 DEBUG Processing 407/669 atomic regions from SNP 121856 to 122456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,981 DEBUG Processing 244/544 atomic regions from SNP 73078 to 73678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,999 DEBUG Processing 240/589 atomic regions from SNP 71892 to 72492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:56,017 DEBUG Processing 435/706 atomic regions from SNP 130288 to 130888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,041 DEBUG Processing 405/639 atomic regions from SNP 121398 to 121998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:56,116 DEBUG Processing 408/669 atomic regions from SNP 122156 to 122756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,200 DEBUG Processing 245/544 atomic regions from SNP 73378 to 73978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,209 DEBUG Processing 241/589 atomic regions from SNP 72192 to 72792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:56,275 DEBUG Processing 406/639 atomic regions from SNP 121698 to 122298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:56,276 DEBUG Processing 436/706 atomic regions from SNP 130588 to 131188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,329 DEBUG Processing 409/669 atomic regions from SNP 122456 to 123056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,411 DEBUG Processing 246/544 atomic regions from SNP 73678 to 74278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,416 DEBUG Processing 242/589 atomic regions from SNP 72492 to 73092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:56,511 DEBUG Processing 407/639 atomic regions from SNP 121998 to 122598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:56,541 DEBUG Processing 437/706 atomic regions from SNP 130888 to 131488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,551 DEBUG Processing 410/669 atomic regions from SNP 122756 to 123356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,618 DEBUG Processing 247/544 atomic regions from SNP 73978 to 74578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,625 DEBUG Processing 243/589 atomic regions from SNP 72792 to 73392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:56,739 DEBUG Processing 408/639 atomic regions from SNP 122298 to 122898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:56,770 DEBUG Processing 411/669 atomic regions from SNP 123056 to 123656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,811 DEBUG Processing 438/706 atomic regions from SNP 131188 to 131788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,828 DEBUG Processing 248/544 atomic regions from SNP 74278 to 74878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,835 DEBUG Processing 244/589 atomic regions from SNP 73092 to 73692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:56,968 DEBUG Processing 409/639 atomic regions from SNP 122598 to 123198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:56,992 DEBUG Processing 412/669 atomic regions from SNP 123356 to 123956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,048 DEBUG Processing 249/544 atomic regions from SNP 74578 to 75178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,051 DEBUG Processing 245/589 atomic regions from SNP 73392 to 73992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:57,058 DEBUG Processing 439/706 atomic regions from SNP 131488 to 132088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,189 DEBUG Processing 410/639 atomic regions from SNP 122898 to 123498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:57,216 DEBUG Processing 413/669 atomic regions from SNP 123656 to 124256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,260 DEBUG Processing 250/544 atomic regions from SNP 74878 to 75478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,264 DEBUG Processing 246/589 atomic regions from SNP 73692 to 74292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:57,307 DEBUG Processing 440/706 atomic regions from SNP 131788 to 132388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,425 DEBUG Processing 411/639 atomic regions from SNP 123198 to 123798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:57,436 DEBUG Processing 414/669 atomic regions from SNP 123956 to 124556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,465 DEBUG Processing 251/544 atomic regions from SNP 75178 to 75778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,476 DEBUG Processing 247/589 atomic regions from SNP 73992 to 74592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:57,543 DEBUG Processing 441/706 atomic regions from SNP 132088 to 132688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,658 DEBUG Processing 415/669 atomic regions from SNP 124256 to 124856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,666 DEBUG Processing 412/639 atomic regions from SNP 123498 to 124098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:57,675 DEBUG Processing 252/544 atomic regions from SNP 75478 to 76078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,688 DEBUG Processing 248/589 atomic regions from SNP 74292 to 74892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:57,781 DEBUG Processing 442/706 atomic regions from SNP 132388 to 132988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,879 DEBUG Processing 253/544 atomic regions from SNP 75778 to 76378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,886 DEBUG Processing 416/669 atomic regions from SNP 124556 to 125156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,889 DEBUG Processing 413/639 atomic regions from SNP 123798 to 124398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:57,903 DEBUG Processing 249/589 atomic regions from SNP 74592 to 75192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,021 DEBUG Processing 443/706 atomic regions from SNP 132688 to 133288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,093 DEBUG Processing 254/544 atomic regions from SNP 76078 to 76678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,119 DEBUG Processing 417/669 atomic regions from SNP 124856 to 125456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,120 DEBUG Processing 250/589 atomic regions from SNP 74892 to 75492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,132 DEBUG Processing 414/639 atomic regions from SNP 124098 to 124698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:58,253 DEBUG Processing 444/706 atomic regions from SNP 132988 to 133588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,304 DEBUG Processing 255/544 atomic regions from SNP 76378 to 76978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,331 DEBUG Processing 251/589 atomic regions from SNP 75192 to 75792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,346 DEBUG Processing 418/669 atomic regions from SNP 125156 to 125756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,367 DEBUG Processing 415/639 atomic regions from SNP 124398 to 124998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:58,491 DEBUG Processing 445/706 atomic regions from SNP 133288 to 133888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,515 DEBUG Processing 256/544 atomic regions from SNP 76678 to 77278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,552 DEBUG Processing 252/589 atomic regions from SNP 75492 to 76092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,585 DEBUG Processing 419/669 atomic regions from SNP 125456 to 126056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,597 DEBUG Processing 416/639 atomic regions from SNP 124698 to 125298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:58,725 DEBUG Processing 257/544 atomic regions from SNP 76978 to 77578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,727 DEBUG Processing 446/706 atomic regions from SNP 133588 to 134188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,771 DEBUG Processing 253/589 atomic regions from SNP 75792 to 76392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,814 DEBUG Processing 420/669 atomic regions from SNP 125756 to 126356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,823 DEBUG Processing 417/639 atomic regions from SNP 124998 to 125598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:58,939 DEBUG Processing 258/544 atomic regions from SNP 77278 to 77878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,973 DEBUG Processing 447/706 atomic regions from SNP 133888 to 134488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,990 DEBUG Processing 254/589 atomic regions from SNP 76092 to 76692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:59,051 DEBUG Processing 421/669 atomic regions from SNP 126056 to 126656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,056 DEBUG Processing 418/639 atomic regions from SNP 125298 to 125898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:59,146 DEBUG Processing 259/544 atomic regions from SNP 77578 to 78178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:59,210 DEBUG Processing 255/589 atomic regions from SNP 76392 to 76992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:59,224 DEBUG Processing 448/706 atomic regions from SNP 134188 to 134788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,292 DEBUG Processing 422/669 atomic regions from SNP 126356 to 126956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,296 DEBUG Processing 419/639 atomic regions from SNP 125598 to 126198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:59,360 DEBUG Processing 260/544 atomic regions from SNP 77878 to 78478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:59,421 DEBUG Processing 256/589 atomic regions from SNP 76692 to 77292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:59,465 DEBUG Processing 449/706 atomic regions from SNP 134488 to 135088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,530 DEBUG Processing 423/669 atomic regions from SNP 126656 to 127256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,539 DEBUG Processing 420/639 atomic regions from SNP 125898 to 126498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:59,582 DEBUG Processing 261/544 atomic regions from SNP 78178 to 78778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:59,626 DEBUG Processing 257/589 atomic regions from SNP 76992 to 77592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:59,706 DEBUG Processing 450/706 atomic regions from SNP 134788 to 135388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,762 DEBUG Processing 424/669 atomic regions from SNP 126956 to 127556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,777 DEBUG Processing 421/639 atomic regions from SNP 126198 to 126798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:59,807 DEBUG Processing 262/544 atomic regions from SNP 78478 to 79078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:59,854 DEBUG Processing 258/589 atomic regions from SNP 77292 to 77892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:59,940 DEBUG Processing 451/706 atomic regions from SNP 135088 to 135688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,984 DEBUG Processing 425/669 atomic regions from SNP 127256 to 127856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,007 DEBUG Processing 422/639 atomic regions from SNP 126498 to 127098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:00,024 DEBUG Processing 263/544 atomic regions from SNP 78778 to 79378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,071 DEBUG Processing 259/589 atomic regions from SNP 77592 to 78192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:00,173 DEBUG Processing 452/706 atomic regions from SNP 135388 to 135988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,224 DEBUG Processing 426/669 atomic regions from SNP 127556 to 128156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,236 DEBUG Processing 423/639 atomic regions from SNP 126798 to 127398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:00,241 DEBUG Processing 264/544 atomic regions from SNP 79078 to 79678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,292 DEBUG Processing 260/589 atomic regions from SNP 77892 to 78492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:00,406 DEBUG Processing 453/706 atomic regions from SNP 135688 to 136288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,450 DEBUG Processing 265/544 atomic regions from SNP 79378 to 79978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,464 DEBUG Processing 424/639 atomic regions from SNP 127098 to 127698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:00,472 DEBUG Processing 427/669 atomic regions from SNP 127856 to 128456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,503 DEBUG Processing 261/589 atomic regions from SNP 78192 to 78792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:00,642 DEBUG Processing 454/706 atomic regions from SNP 135988 to 136588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,665 DEBUG Processing 266/544 atomic regions from SNP 79678 to 80278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,696 DEBUG Processing 425/639 atomic regions from SNP 127398 to 127998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:00,707 DEBUG Processing 428/669 atomic regions from SNP 128156 to 128756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,722 DEBUG Processing 262/589 atomic regions from SNP 78492 to 79092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:00,871 DEBUG Processing 267/544 atomic regions from SNP 79978 to 80578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,871 DEBUG Processing 455/706 atomic regions from SNP 136288 to 136888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,919 DEBUG Processing 426/639 atomic regions from SNP 127698 to 128298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:00,942 DEBUG Processing 429/669 atomic regions from SNP 128456 to 129056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,946 DEBUG Processing 263/589 atomic regions from SNP 78792 to 79392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:01,078 DEBUG Processing 268/544 atomic regions from SNP 80278 to 80878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:01,110 DEBUG Processing 456/706 atomic regions from SNP 136588 to 137188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,145 DEBUG Processing 427/639 atomic regions from SNP 127998 to 128598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:01,162 DEBUG Processing 264/589 atomic regions from SNP 79092 to 79692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:01,171 DEBUG Processing 430/669 atomic regions from SNP 128756 to 129356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,280 DEBUG Processing 269/544 atomic regions from SNP 80578 to 81178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:01,337 DEBUG Processing 457/706 atomic regions from SNP 136888 to 137488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,361 DEBUG Processing 428/639 atomic regions from SNP 128298 to 128898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:01,375 DEBUG Processing 265/589 atomic regions from SNP 79392 to 79992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:01,391 DEBUG Processing 431/669 atomic regions from SNP 129056 to 129656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,475 DEBUG Processing 270/544 atomic regions from SNP 80878 to 81478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:01,561 DEBUG Processing 458/706 atomic regions from SNP 137188 to 137788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,578 DEBUG Processing 429/639 atomic regions from SNP 128598 to 129198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:01,585 DEBUG Processing 266/589 atomic regions from SNP 79692 to 80292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:01,612 DEBUG Processing 432/669 atomic regions from SNP 129356 to 129956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,678 DEBUG Processing 271/544 atomic regions from SNP 81178 to 81778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:01,789 DEBUG Processing 459/706 atomic regions from SNP 137488 to 138088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,798 DEBUG Processing 267/589 atomic regions from SNP 79992 to 80592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:01,799 DEBUG Processing 430/639 atomic regions from SNP 128898 to 129498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:01,839 DEBUG Processing 433/669 atomic regions from SNP 129656 to 130256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,883 DEBUG Processing 272/544 atomic regions from SNP 81478 to 82078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,007 DEBUG Processing 268/589 atomic regions from SNP 80292 to 80892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:02,016 DEBUG Processing 460/706 atomic regions from SNP 137788 to 138388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,036 DEBUG Processing 431/639 atomic regions from SNP 129198 to 129798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:02,065 DEBUG Processing 434/669 atomic regions from SNP 129956 to 130556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,090 DEBUG Processing 273/544 atomic regions from SNP 81778 to 82378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,216 DEBUG Processing 269/589 atomic regions from SNP 80592 to 81192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:02,243 DEBUG Processing 461/706 atomic regions from SNP 138088 to 138688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,277 DEBUG Processing 432/639 atomic regions from SNP 129498 to 130098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:02,280 DEBUG Processing 435/669 atomic regions from SNP 130256 to 130856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,299 DEBUG Processing 274/544 atomic regions from SNP 82078 to 82678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,431 DEBUG Processing 270/589 atomic regions from SNP 80892 to 81492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:02,474 DEBUG Processing 462/706 atomic regions from SNP 138388 to 138988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,502 DEBUG Processing 275/544 atomic regions from SNP 82378 to 82978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,504 DEBUG Processing 433/639 atomic regions from SNP 129798 to 130398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:02,504 DEBUG Processing 436/669 atomic regions from SNP 130556 to 131156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,647 DEBUG Processing 271/589 atomic regions from SNP 81192 to 81792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:02,704 DEBUG Processing 463/706 atomic regions from SNP 138688 to 139288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,704 DEBUG Processing 276/544 atomic regions from SNP 82678 to 83278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,721 DEBUG Processing 434/639 atomic regions from SNP 130098 to 130698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:02,727 DEBUG Processing 437/669 atomic regions from SNP 130856 to 131456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,853 DEBUG Processing 272/589 atomic regions from SNP 81492 to 82092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:02,907 DEBUG Processing 277/544 atomic regions from SNP 82978 to 83578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,930 DEBUG Processing 464/706 atomic regions from SNP 138988 to 139588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,937 DEBUG Processing 435/639 atomic regions from SNP 130398 to 130998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:02,949 DEBUG Processing 438/669 atomic regions from SNP 131156 to 131756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,062 DEBUG Processing 273/589 atomic regions from SNP 81792 to 82392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:03,111 DEBUG Processing 278/544 atomic regions from SNP 83278 to 83878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,157 DEBUG Processing 465/706 atomic regions from SNP 139288 to 139888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,173 DEBUG Processing 439/669 atomic regions from SNP 131456 to 132056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,179 DEBUG Processing 436/639 atomic regions from SNP 130698 to 131298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:03,272 DEBUG Processing 274/589 atomic regions from SNP 82092 to 82692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:03,317 DEBUG Processing 279/544 atomic regions from SNP 83578 to 84178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,380 DEBUG Processing 466/706 atomic regions from SNP 139588 to 140188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,388 DEBUG Processing 440/669 atomic regions from SNP 131756 to 132356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,410 DEBUG Processing 437/639 atomic regions from SNP 130998 to 131598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:03,484 DEBUG Processing 275/589 atomic regions from SNP 82392 to 82992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:03,522 DEBUG Processing 280/544 atomic regions from SNP 83878 to 84478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,607 DEBUG Processing 467/706 atomic regions from SNP 139888 to 140488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,629 DEBUG Processing 438/639 atomic regions from SNP 131298 to 131898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:03,634 DEBUG Processing 441/669 atomic regions from SNP 132056 to 132656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,699 DEBUG Processing 276/589 atomic regions from SNP 82692 to 83292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:03,727 DEBUG Processing 281/544 atomic regions from SNP 84178 to 84778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,833 DEBUG Processing 468/706 atomic regions from SNP 140188 to 140788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,844 DEBUG Processing 439/639 atomic regions from SNP 131598 to 132198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:03,867 DEBUG Processing 442/669 atomic regions from SNP 132356 to 132956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,908 DEBUG Processing 277/589 atomic regions from SNP 82992 to 83592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:03,927 DEBUG Processing 282/544 atomic regions from SNP 84478 to 85078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,061 DEBUG Processing 469/706 atomic regions from SNP 140488 to 141088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,073 DEBUG Processing 440/639 atomic regions from SNP 131898 to 132498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:04,089 DEBUG Processing 443/669 atomic regions from SNP 132656 to 133256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:04,114 DEBUG Processing 278/589 atomic regions from SNP 83292 to 83892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:04,130 DEBUG Processing 283/544 atomic regions from SNP 84778 to 85378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,292 DEBUG Processing 470/706 atomic regions from SNP 140788 to 141388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,294 DEBUG Processing 441/639 atomic regions from SNP 132198 to 132798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:04,321 DEBUG Processing 444/669 atomic regions from SNP 132956 to 133556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:04,328 DEBUG Processing 279/589 atomic regions from SNP 83592 to 84192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:04,336 DEBUG Processing 284/544 atomic regions from SNP 85078 to 85678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,523 DEBUG Processing 471/706 atomic regions from SNP 141088 to 141688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,532 DEBUG Processing 442/639 atomic regions from SNP 132498 to 133098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:04,546 DEBUG Processing 285/544 atomic regions from SNP 85378 to 85978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,552 DEBUG Processing 280/589 atomic regions from SNP 83892 to 84492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:04,557 DEBUG Processing 445/669 atomic regions from SNP 133256 to 133856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:04,750 DEBUG Processing 472/706 atomic regions from SNP 141388 to 141988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,755 DEBUG Processing 286/544 atomic regions from SNP 85678 to 86278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,760 DEBUG Processing 443/639 atomic regions from SNP 132798 to 133398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:04,775 DEBUG Processing 281/589 atomic regions from SNP 84192 to 84792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:04,817 DEBUG Processing 446/669 atomic regions from SNP 133556 to 134156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:04,955 DEBUG Processing 287/544 atomic regions from SNP 85978 to 86578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,972 DEBUG Processing 473/706 atomic regions from SNP 141688 to 142288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,988 DEBUG Processing 282/589 atomic regions from SNP 84492 to 85092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:04,993 DEBUG Processing 444/639 atomic regions from SNP 133098 to 133698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:05,067 DEBUG Processing 447/669 atomic regions from SNP 133856 to 134456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:05,152 DEBUG Processing 288/544 atomic regions from SNP 86278 to 86878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:05,193 DEBUG Processing 283/589 atomic regions from SNP 84792 to 85392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:05,195 DEBUG Processing 474/706 atomic regions from SNP 141988 to 142588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,214 DEBUG Processing 445/639 atomic regions from SNP 133398 to 133998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:05,304 DEBUG Processing 448/669 atomic regions from SNP 134156 to 134756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:05,359 DEBUG Processing 289/544 atomic regions from SNP 86578 to 87178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:05,401 DEBUG Processing 284/589 atomic regions from SNP 85092 to 85692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:05,423 DEBUG Processing 475/706 atomic regions from SNP 142288 to 142888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,433 DEBUG Processing 446/639 atomic regions from SNP 133698 to 134298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:05,538 DEBUG Processing 449/669 atomic regions from SNP 134456 to 135056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:05,575 DEBUG Processing 290/544 atomic regions from SNP 86878 to 87478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:05,617 DEBUG Processing 285/589 atomic regions from SNP 85392 to 85992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:05,657 DEBUG Processing 476/706 atomic regions from SNP 142588 to 143188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,658 DEBUG Processing 447/639 atomic regions from SNP 133998 to 134598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:05,755 DEBUG Processing 450/669 atomic regions from SNP 134756 to 135356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:05,784 DEBUG Processing 291/544 atomic regions from SNP 87178 to 87778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:05,829 DEBUG Processing 286/589 atomic regions from SNP 85692 to 86292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:05,884 DEBUG Processing 448/639 atomic regions from SNP 134298 to 134898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:05,890 DEBUG Processing 477/706 atomic regions from SNP 142888 to 143488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,972 DEBUG Processing 451/669 atomic regions from SNP 135056 to 135656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:05,988 DEBUG Processing 292/544 atomic regions from SNP 87478 to 88078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,038 DEBUG Processing 287/589 atomic regions from SNP 85992 to 86592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:06,108 DEBUG Processing 449/639 atomic regions from SNP 134598 to 135198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:06,134 DEBUG Processing 478/706 atomic regions from SNP 143188 to 143788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,188 DEBUG Processing 452/669 atomic regions from SNP 135356 to 135956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,192 DEBUG Processing 293/544 atomic regions from SNP 87778 to 88378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,192 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:52:06,194 DEBUG chr17: Signal quantile: 0.992. signal threshold: 10. Best RMSEA: 0.015 2025-01-31 09:52:06,246 DEBUG Processing 288/589 atomic regions from SNP 86292 to 86892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:06,335 DEBUG Processing 450/639 atomic regions from SNP 134898 to 135498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:06,400 DEBUG Processing 479/706 atomic regions from SNP 143488 to 144088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,406 DEBUG Processing 294/544 atomic regions from SNP 88078 to 88678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,408 DEBUG Processing 453/669 atomic regions from SNP 135656 to 136256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,453 DEBUG Processing 289/589 atomic regions from SNP 86592 to 87192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:06,563 DEBUG Processing 451/639 atomic regions from SNP 135198 to 135798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:06,625 DEBUG Processing 295/544 atomic regions from SNP 88378 to 88978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,631 DEBUG Processing 454/669 atomic regions from SNP 135956 to 136556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,648 DEBUG Processing 480/706 atomic regions from SNP 143788 to 144388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,658 DEBUG Processing 290/589 atomic regions from SNP 86892 to 87492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:06,801 DEBUG Processing 452/639 atomic regions from SNP 135498 to 136098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:06,840 DEBUG Processing 296/544 atomic regions from SNP 88678 to 89278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,858 DEBUG Processing 455/669 atomic regions from SNP 136256 to 136856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,872 DEBUG Processing 291/589 atomic regions from SNP 87192 to 87792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:06,888 DEBUG Processing 481/706 atomic regions from SNP 144088 to 144688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,054 DEBUG Processing 297/544 atomic regions from SNP 88978 to 89578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:07,060 DEBUG Processing 453/639 atomic regions from SNP 135798 to 136398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:07,087 DEBUG Processing 456/669 atomic regions from SNP 136556 to 137156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:07,088 DEBUG Processing 292/589 atomic regions from SNP 87492 to 88092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:07,129 DEBUG Processing 482/706 atomic regions from SNP 144388 to 144988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,263 DEBUG Processing 298/544 atomic regions from SNP 89278 to 89878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:07,302 DEBUG Processing 293/589 atomic regions from SNP 87792 to 88392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:07,309 DEBUG Processing 454/639 atomic regions from SNP 136098 to 136698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:07,316 DEBUG Processing 457/669 atomic regions from SNP 136856 to 137456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:07,371 DEBUG Processing 483/706 atomic regions from SNP 144688 to 145288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,469 DEBUG Processing 299/544 atomic regions from SNP 89578 to 90178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:07,509 DEBUG Processing 294/589 atomic regions from SNP 88092 to 88692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:07,542 DEBUG Processing 458/669 atomic regions from SNP 137156 to 137756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:07,543 DEBUG Processing 455/639 atomic regions from SNP 136398 to 136998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:07,605 DEBUG Processing 484/706 atomic regions from SNP 144988 to 145588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,674 DEBUG Processing 300/544 atomic regions from SNP 89878 to 90478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:07,711 DEBUG Processing 295/589 atomic regions from SNP 88392 to 88992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:07,755 DEBUG Processing 459/669 atomic regions from SNP 137456 to 138056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:07,763 DEBUG Processing 456/639 atomic regions from SNP 136698 to 137298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:07,855 DEBUG Processing 485/706 atomic regions from SNP 145288 to 145888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,885 DEBUG Processing 301/544 atomic regions from SNP 90178 to 90778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:07,920 DEBUG Processing 296/589 atomic regions from SNP 88692 to 89292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:07,972 DEBUG Processing 460/669 atomic regions from SNP 137756 to 138356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:07,979 DEBUG Processing 457/639 atomic regions from SNP 136998 to 137598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:08,013 DEBUG chr17 total SNP count: 155956 2025-01-31 09:52:08,013 DEBUG chr17 length: 94987271 2025-01-31 09:52:08,013 DEBUG ----------------------------------------- 2025-01-31 09:52:08,013 INFO Processing SNPs in chr17 2025-01-31 09:52:08,097 DEBUG Processing 486/706 atomic regions from SNP 145588 to 146188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:08,102 DEBUG Processing 302/544 atomic regions from SNP 90478 to 91078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:08,138 DEBUG Processing 297/589 atomic regions from SNP 88992 to 89592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:08,176 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 155956)] 2025-01-31 09:52:08,195 DEBUG Processing 461/669 atomic regions from SNP 138056 to 138656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:08,199 DEBUG Processing 458/639 atomic regions from SNP 137298 to 137898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:08,287 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:08,313 DEBUG Processing 303/544 atomic regions from SNP 90778 to 91378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:08,334 DEBUG Processing 487/706 atomic regions from SNP 145888 to 146488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:08,347 DEBUG Processing 298/589 atomic regions from SNP 89292 to 89892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:08,419 DEBUG Processing 462/669 atomic regions from SNP 138356 to 138956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:08,421 DEBUG Processing 459/639 atomic regions from SNP 137598 to 138198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:08,526 DEBUG Processing 304/544 atomic regions from SNP 91078 to 91678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:08,562 DEBUG Processing 299/589 atomic regions from SNP 89592 to 90192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:08,576 DEBUG Processing 488/706 atomic regions from SNP 146188 to 146788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:08,647 DEBUG Processing 460/639 atomic regions from SNP 137898 to 138498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:08,651 DEBUG Processing 463/669 atomic regions from SNP 138656 to 139256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:08,735 DEBUG Processing 305/544 atomic regions from SNP 91378 to 91978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:08,786 DEBUG Processing 300/589 atomic regions from SNP 89892 to 90492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:08,809 DEBUG Processing 489/706 atomic regions from SNP 146488 to 147088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:08,878 DEBUG Processing 461/639 atomic regions from SNP 138198 to 138798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:08,881 DEBUG Processing 464/669 atomic regions from SNP 138956 to 139556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:08,957 DEBUG Processing 306/544 atomic regions from SNP 91678 to 92278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:08,998 DEBUG Processing 301/589 atomic regions from SNP 90192 to 90792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:09,047 DEBUG Processing 490/706 atomic regions from SNP 146788 to 147388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:09,103 DEBUG Processing 465/669 atomic regions from SNP 139256 to 139856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:09,114 DEBUG Processing 462/639 atomic regions from SNP 138498 to 139098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:09,182 DEBUG Processing 307/544 atomic regions from SNP 91978 to 92578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:09,210 DEBUG Processing 302/589 atomic regions from SNP 90492 to 91092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:09,285 DEBUG Processing 491/706 atomic regions from SNP 147088 to 147688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:09,333 DEBUG Processing 466/669 atomic regions from SNP 139556 to 140156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:09,348 DEBUG Processing 463/639 atomic regions from SNP 138798 to 139398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:09,402 DEBUG Processing 308/544 atomic regions from SNP 92278 to 92878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:09,428 DEBUG Processing 303/589 atomic regions from SNP 90792 to 91392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:09,525 DEBUG Processing 492/706 atomic regions from SNP 147388 to 147988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:09,567 DEBUG Processing 467/669 atomic regions from SNP 139856 to 140456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:09,578 DEBUG Processing 464/639 atomic regions from SNP 139098 to 139698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:09,622 DEBUG Processing 309/544 atomic regions from SNP 92578 to 93178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:09,646 DEBUG Processing 304/589 atomic regions from SNP 91092 to 91692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:09,764 DEBUG Processing 493/706 atomic regions from SNP 147688 to 148288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:09,799 DEBUG Processing 468/669 atomic regions from SNP 140156 to 140756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:09,811 DEBUG Processing 465/639 atomic regions from SNP 139398 to 139998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:09,843 DEBUG Processing 310/544 atomic regions from SNP 92878 to 93478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:09,871 DEBUG Processing 305/589 atomic regions from SNP 91392 to 91992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:10,002 DEBUG Processing 494/706 atomic regions from SNP 147988 to 148588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:10,032 DEBUG Processing 469/669 atomic regions from SNP 140456 to 141056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:10,045 DEBUG Processing 466/639 atomic regions from SNP 139698 to 140298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:10,063 DEBUG Processing 311/544 atomic regions from SNP 93178 to 93778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:10,089 DEBUG Processing 306/589 atomic regions from SNP 91692 to 92292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:10,239 DEBUG Processing 495/706 atomic regions from SNP 148288 to 148888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:10,265 DEBUG Processing 470/669 atomic regions from SNP 140756 to 141356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:10,279 DEBUG Processing 467/639 atomic regions from SNP 139998 to 140598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:10,285 DEBUG Processing 312/544 atomic regions from SNP 93478 to 94078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:10,311 DEBUG Processing 307/589 atomic regions from SNP 91992 to 92592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:10,485 DEBUG Processing 496/706 atomic regions from SNP 148588 to 149188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:10,494 DEBUG Processing 471/669 atomic regions from SNP 141056 to 141656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:10,505 DEBUG Processing 313/544 atomic regions from SNP 93778 to 94378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:10,513 DEBUG Processing 468/639 atomic regions from SNP 140298 to 140898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:10,529 DEBUG Processing 308/589 atomic regions from SNP 92292 to 92892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:10,712 DEBUG Processing 472/669 atomic regions from SNP 141356 to 141956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:10,713 DEBUG Processing 314/544 atomic regions from SNP 94078 to 94678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:10,735 DEBUG Processing 469/639 atomic regions from SNP 140598 to 141198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:10,737 DEBUG Processing 309/589 atomic regions from SNP 92592 to 93192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:10,739 DEBUG Processing 497/706 atomic regions from SNP 148888 to 149488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:10,915 DEBUG Processing 315/544 atomic regions from SNP 94378 to 94978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:10,926 DEBUG Processing 473/669 atomic regions from SNP 141656 to 142256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:10,940 DEBUG Processing 310/589 atomic regions from SNP 92892 to 93492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:10,954 DEBUG Processing 470/639 atomic regions from SNP 140898 to 141498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:10,966 DEBUG Processing 498/706 atomic regions from SNP 149188 to 149788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:11,120 DEBUG Processing 316/544 atomic regions from SNP 94678 to 95278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:11,146 DEBUG Processing 474/669 atomic regions from SNP 141956 to 142556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:11,147 DEBUG Processing 311/589 atomic regions from SNP 93192 to 93792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:11,168 DEBUG Processing 471/639 atomic regions from SNP 141198 to 141798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:11,201 DEBUG Processing 499/706 atomic regions from SNP 149488 to 150088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:11,325 DEBUG Processing 317/544 atomic regions from SNP 94978 to 95578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:11,357 DEBUG Processing 312/589 atomic regions from SNP 93492 to 94092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:11,368 DEBUG Processing 475/669 atomic regions from SNP 142256 to 142856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:11,382 DEBUG Processing 472/639 atomic regions from SNP 141498 to 142098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:11,424 DEBUG Processing 500/706 atomic regions from SNP 149788 to 150388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:11,532 DEBUG Processing 318/544 atomic regions from SNP 95278 to 95878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:11,591 DEBUG Processing 313/589 atomic regions from SNP 93792 to 94392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:11,592 DEBUG Processing 476/669 atomic regions from SNP 142556 to 143156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:11,597 DEBUG Processing 473/639 atomic regions from SNP 141798 to 142398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:11,643 DEBUG Processing 501/706 atomic regions from SNP 150088 to 150688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:11,740 DEBUG Processing 319/544 atomic regions from SNP 95578 to 96178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:11,814 DEBUG Processing 474/639 atomic regions from SNP 142098 to 142698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:11,819 DEBUG Processing 477/669 atomic regions from SNP 142856 to 143456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:11,823 DEBUG Processing 314/589 atomic regions from SNP 94092 to 94692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:11,864 DEBUG Processing 502/706 atomic regions from SNP 150388 to 150988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:11,945 DEBUG Processing 320/544 atomic regions from SNP 95878 to 96478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:12,034 DEBUG Processing 475/639 atomic regions from SNP 142398 to 142998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:12,044 DEBUG Processing 478/669 atomic regions from SNP 143156 to 143756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:12,048 DEBUG Processing 315/589 atomic regions from SNP 94392 to 94992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:12,088 DEBUG Processing 503/706 atomic regions from SNP 150688 to 151288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:12,153 DEBUG Processing 321/544 atomic regions from SNP 96178 to 96778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:12,255 DEBUG Processing 476/639 atomic regions from SNP 142698 to 143298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:12,256 DEBUG Processing 316/589 atomic regions from SNP 94692 to 95292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:12,265 DEBUG Processing 479/669 atomic regions from SNP 143456 to 144056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:12,318 DEBUG Processing 504/706 atomic regions from SNP 150988 to 151588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:12,358 DEBUG Processing 322/544 atomic regions from SNP 96478 to 97078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:12,466 DEBUG Processing 317/589 atomic regions from SNP 94992 to 95592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:12,477 DEBUG Processing 477/639 atomic regions from SNP 142998 to 143598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:12,490 DEBUG Processing 480/669 atomic regions from SNP 143756 to 144356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:12,550 DEBUG Processing 505/706 atomic regions from SNP 151288 to 151888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:12,570 DEBUG Processing 323/544 atomic regions from SNP 96778 to 97378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:12,673 DEBUG Processing 318/589 atomic regions from SNP 95292 to 95892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:12,692 DEBUG Processing 478/639 atomic regions from SNP 143298 to 143898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:12,710 DEBUG Processing 481/669 atomic regions from SNP 144056 to 144656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:12,781 DEBUG Processing 324/544 atomic regions from SNP 97078 to 97678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:12,781 DEBUG Processing 506/706 atomic regions from SNP 151588 to 152188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:12,904 DEBUG Processing 319/589 atomic regions from SNP 95592 to 96192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:12,913 DEBUG Processing 479/639 atomic regions from SNP 143598 to 144198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:12,931 DEBUG Processing 482/669 atomic regions from SNP 144356 to 144956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:12,992 DEBUG Processing 325/544 atomic regions from SNP 97378 to 97978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:13,016 DEBUG Processing 507/706 atomic regions from SNP 151888 to 152488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:13,139 DEBUG Processing 480/639 atomic regions from SNP 143898 to 144498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:13,140 DEBUG Processing 320/589 atomic regions from SNP 95892 to 96492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:13,158 DEBUG Processing 483/669 atomic regions from SNP 144656 to 145256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:13,199 DEBUG Processing 326/544 atomic regions from SNP 97678 to 98278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:13,249 DEBUG Processing 508/706 atomic regions from SNP 152188 to 152788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:13,362 DEBUG Processing 321/589 atomic regions from SNP 96192 to 96792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:13,377 DEBUG Processing 481/639 atomic regions from SNP 144198 to 144798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:13,393 DEBUG Processing 484/669 atomic regions from SNP 144956 to 145556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:13,411 DEBUG Processing 327/544 atomic regions from SNP 97978 to 98578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:13,480 DEBUG Processing 509/706 atomic regions from SNP 152488 to 153088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:13,577 DEBUG Processing 322/589 atomic regions from SNP 96492 to 97092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:13,620 DEBUG Processing 482/639 atomic regions from SNP 144498 to 145098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:13,625 DEBUG Processing 485/669 atomic regions from SNP 145256 to 145856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:13,630 DEBUG Processing 328/544 atomic regions from SNP 98278 to 98878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:13,712 DEBUG Processing 510/706 atomic regions from SNP 152788 to 153388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:13,789 DEBUG Processing 323/589 atomic regions from SNP 96792 to 97392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:13,851 DEBUG Processing 329/544 atomic regions from SNP 98578 to 99178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:13,853 DEBUG Processing 483/639 atomic regions from SNP 144798 to 145398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:13,856 DEBUG Processing 486/669 atomic regions from SNP 145556 to 146156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:13,943 DEBUG Processing 511/706 atomic regions from SNP 153088 to 153688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:13,993 DEBUG Processing 324/589 atomic regions from SNP 97092 to 97692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:14,060 DEBUG Processing 330/544 atomic regions from SNP 98878 to 99478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:14,079 DEBUG Processing 484/639 atomic regions from SNP 145098 to 145698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:14,081 DEBUG Processing 487/669 atomic regions from SNP 145856 to 146456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:14,178 DEBUG Processing 512/706 atomic regions from SNP 153388 to 153988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:14,199 DEBUG Processing 325/589 atomic regions from SNP 97392 to 97992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:14,264 DEBUG Processing 331/544 atomic regions from SNP 99178 to 99778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:14,297 DEBUG Processing 485/639 atomic regions from SNP 145398 to 145998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:14,301 DEBUG Processing 488/669 atomic regions from SNP 146156 to 146756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:14,411 DEBUG Processing 326/589 atomic regions from SNP 97692 to 98292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:14,413 DEBUG Processing 513/706 atomic regions from SNP 153688 to 154288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:14,469 DEBUG Processing 332/544 atomic regions from SNP 99478 to 100078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:14,517 DEBUG Processing 486/639 atomic regions from SNP 145698 to 146298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:14,521 DEBUG Processing 489/669 atomic regions from SNP 146456 to 147056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:14,625 DEBUG Processing 327/589 atomic regions from SNP 97992 to 98592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:14,650 DEBUG Processing 514/706 atomic regions from SNP 153988 to 154588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:14,676 DEBUG Processing 333/544 atomic regions from SNP 99778 to 100378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:14,737 DEBUG Processing 490/669 atomic regions from SNP 146756 to 147356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:14,738 DEBUG Processing 487/639 atomic regions from SNP 145998 to 146598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:14,843 DEBUG Processing 328/589 atomic regions from SNP 98292 to 98892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:14,880 DEBUG Processing 515/706 atomic regions from SNP 154288 to 154888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:14,886 DEBUG Processing 334/544 atomic regions from SNP 100078 to 100678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:14,957 DEBUG Processing 491/669 atomic regions from SNP 147056 to 147656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:14,958 DEBUG Processing 488/639 atomic regions from SNP 146298 to 146898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:15,055 DEBUG Processing 329/589 atomic regions from SNP 98592 to 99192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:15,094 DEBUG Processing 335/544 atomic regions from SNP 100378 to 100978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:15,110 DEBUG Processing 516/706 atomic regions from SNP 154588 to 155188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:15,177 DEBUG Processing 492/669 atomic regions from SNP 147356 to 147956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:15,182 DEBUG Processing 489/639 atomic regions from SNP 146598 to 147198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:15,258 DEBUG Processing 330/589 atomic regions from SNP 98892 to 99492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:15,301 DEBUG Processing 336/544 atomic regions from SNP 100678 to 101278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:15,339 DEBUG Processing 517/706 atomic regions from SNP 154888 to 155488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:15,400 DEBUG Processing 490/639 atomic regions from SNP 146898 to 147498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:15,401 DEBUG Processing 493/669 atomic regions from SNP 147656 to 148256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:15,464 DEBUG Processing 331/589 atomic regions from SNP 99192 to 99792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:15,513 DEBUG Processing 337/544 atomic regions from SNP 100978 to 101578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:15,569 DEBUG Processing 518/706 atomic regions from SNP 155188 to 155788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:15,615 DEBUG Processing 491/639 atomic regions from SNP 147198 to 147798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:15,628 DEBUG Processing 494/669 atomic regions from SNP 147956 to 148556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:15,677 DEBUG Processing 332/589 atomic regions from SNP 99492 to 100092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:15,723 DEBUG Processing 338/544 atomic regions from SNP 101278 to 101878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:15,801 DEBUG Processing 519/706 atomic regions from SNP 155488 to 156088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:15,832 DEBUG Processing 492/639 atomic regions from SNP 147498 to 148098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:15,851 DEBUG Processing 495/669 atomic regions from SNP 148256 to 148856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:15,886 DEBUG Processing 333/589 atomic regions from SNP 99792 to 100392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:15,939 DEBUG Processing 339/544 atomic regions from SNP 101578 to 102178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:16,031 DEBUG Processing 520/706 atomic regions from SNP 155788 to 156388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,048 DEBUG Processing 493/639 atomic regions from SNP 147798 to 148398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:16,072 DEBUG Processing 496/669 atomic regions from SNP 148556 to 149156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:16,094 DEBUG Processing 334/589 atomic regions from SNP 100092 to 100692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:16,147 DEBUG Processing 340/544 atomic regions from SNP 101878 to 102478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:16,261 DEBUG Processing 521/706 atomic regions from SNP 156088 to 156688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,266 DEBUG Processing 494/639 atomic regions from SNP 148098 to 148698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:16,293 DEBUG Processing 497/669 atomic regions from SNP 148856 to 149456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:16,302 DEBUG Processing 335/589 atomic regions from SNP 100392 to 100992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:16,349 DEBUG Processing 341/544 atomic regions from SNP 102178 to 102778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:16,484 DEBUG Processing 495/639 atomic regions from SNP 148398 to 148998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:16,490 DEBUG Processing 522/706 atomic regions from SNP 156388 to 156988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,512 DEBUG Processing 336/589 atomic regions from SNP 100692 to 101292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:16,515 DEBUG Processing 498/669 atomic regions from SNP 149156 to 149756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:16,551 DEBUG Processing 342/544 atomic regions from SNP 102478 to 103078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:16,703 DEBUG Processing 496/639 atomic regions from SNP 148698 to 149298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:16,723 DEBUG Processing 523/706 atomic regions from SNP 156688 to 157288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,724 DEBUG Processing 337/589 atomic regions from SNP 100992 to 101592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:16,738 DEBUG Processing 499/669 atomic regions from SNP 149456 to 150056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:16,755 DEBUG Processing 343/544 atomic regions from SNP 102778 to 103378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:16,930 DEBUG Processing 497/639 atomic regions from SNP 148998 to 149598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:16,930 DEBUG Processing 338/589 atomic regions from SNP 101292 to 101892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:16,959 DEBUG Processing 524/706 atomic regions from SNP 156988 to 157588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,968 DEBUG Processing 344/544 atomic regions from SNP 103078 to 103678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:16,976 DEBUG Processing 500/669 atomic regions from SNP 149756 to 150356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:17,140 DEBUG Processing 339/589 atomic regions from SNP 101592 to 102192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:17,156 DEBUG Processing 498/639 atomic regions from SNP 149298 to 149898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:17,181 DEBUG Processing 345/544 atomic regions from SNP 103378 to 103978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:17,197 DEBUG Processing 525/706 atomic regions from SNP 157288 to 157888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,244 DEBUG Processing 501/669 atomic regions from SNP 150056 to 150656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:17,345 DEBUG Processing 340/589 atomic regions from SNP 101892 to 102492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:17,381 DEBUG Processing 499/639 atomic regions from SNP 149598 to 150198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:17,397 DEBUG Processing 346/544 atomic regions from SNP 103678 to 104278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:17,435 DEBUG Processing 526/706 atomic regions from SNP 157588 to 158188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,463 DEBUG Processing 502/669 atomic regions from SNP 150356 to 150956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:17,555 DEBUG Processing 341/589 atomic regions from SNP 102192 to 102792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:17,602 DEBUG Processing 347/544 atomic regions from SNP 103978 to 104578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:17,605 DEBUG Processing 500/639 atomic regions from SNP 149898 to 150498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:17,670 DEBUG Processing 527/706 atomic regions from SNP 157888 to 158488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,690 DEBUG Processing 503/669 atomic regions from SNP 150656 to 151256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:17,770 DEBUG Processing 342/589 atomic regions from SNP 102492 to 103092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:17,801 DEBUG Processing 348/544 atomic regions from SNP 104278 to 104878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:17,817 DEBUG Processing 501/639 atomic regions from SNP 150198 to 150798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:17,902 DEBUG Processing 528/706 atomic regions from SNP 158188 to 158788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,920 DEBUG Processing 504/669 atomic regions from SNP 150956 to 151556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:17,981 DEBUG Processing 343/589 atomic regions from SNP 102792 to 103392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:17,999 DEBUG Processing 349/544 atomic regions from SNP 104578 to 105178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:18,028 DEBUG Processing 502/639 atomic regions from SNP 150498 to 151098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:18,134 DEBUG Processing 529/706 atomic regions from SNP 158488 to 159088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,146 DEBUG Processing 505/669 atomic regions from SNP 151256 to 151856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:18,191 DEBUG Processing 344/589 atomic regions from SNP 103092 to 103692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:18,204 DEBUG Processing 350/544 atomic regions from SNP 104878 to 105478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:18,245 DEBUG Processing 503/639 atomic regions from SNP 150798 to 151398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:18,366 DEBUG Processing 530/706 atomic regions from SNP 158788 to 159388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,374 DEBUG Processing 506/669 atomic regions from SNP 151556 to 152156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:18,401 DEBUG Processing 345/589 atomic regions from SNP 103392 to 103992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:18,416 DEBUG Processing 351/544 atomic regions from SNP 105178 to 105778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:18,465 DEBUG Processing 504/639 atomic regions from SNP 151098 to 151698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:18,599 DEBUG Processing 531/706 atomic regions from SNP 159088 to 159688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,619 DEBUG Processing 346/589 atomic regions from SNP 103692 to 104292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:18,622 DEBUG Processing 507/669 atomic regions from SNP 151856 to 152456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:18,631 DEBUG Processing 352/544 atomic regions from SNP 105478 to 106078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:18,690 DEBUG Processing 505/639 atomic regions from SNP 151398 to 151998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:18,834 DEBUG Processing 532/706 atomic regions from SNP 159388 to 159988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,837 DEBUG Processing 347/589 atomic regions from SNP 103992 to 104592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:18,841 DEBUG Processing 353/544 atomic regions from SNP 105778 to 106378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:18,866 DEBUG Processing 508/669 atomic regions from SNP 152156 to 152756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:18,916 DEBUG Processing 506/639 atomic regions from SNP 151698 to 152298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:19,050 DEBUG Processing 348/589 atomic regions from SNP 104292 to 104892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:19,053 DEBUG Processing 354/544 atomic regions from SNP 106078 to 106678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:19,066 DEBUG Processing 533/706 atomic regions from SNP 159688 to 160288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,098 DEBUG Processing 509/669 atomic regions from SNP 152456 to 153056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:19,139 DEBUG Processing 507/639 atomic regions from SNP 151998 to 152598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:19,261 DEBUG Processing 349/589 atomic regions from SNP 104592 to 105192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:19,263 DEBUG Processing 355/544 atomic regions from SNP 106378 to 106978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:19,301 DEBUG Processing 534/706 atomic regions from SNP 159988 to 160588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,326 DEBUG Processing 510/669 atomic regions from SNP 152756 to 153356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:19,364 DEBUG Processing 508/639 atomic regions from SNP 152298 to 152898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:19,471 DEBUG Processing 350/589 atomic regions from SNP 104892 to 105492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:19,481 DEBUG Processing 356/544 atomic regions from SNP 106678 to 107278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:19,544 DEBUG Processing 511/669 atomic regions from SNP 153056 to 153656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:19,554 DEBUG Processing 535/706 atomic regions from SNP 160288 to 160888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,587 DEBUG Processing 509/639 atomic regions from SNP 152598 to 153198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:19,687 DEBUG Processing 351/589 atomic regions from SNP 105192 to 105792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:19,699 DEBUG Processing 357/544 atomic regions from SNP 106978 to 107578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:19,768 DEBUG Processing 512/669 atomic regions from SNP 153356 to 153956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:19,805 DEBUG Processing 536/706 atomic regions from SNP 160588 to 161188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,805 DEBUG Processing 510/639 atomic regions from SNP 152898 to 153498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:19,910 DEBUG Processing 352/589 atomic regions from SNP 105492 to 106092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:19,912 DEBUG Processing 358/544 atomic regions from SNP 107278 to 107878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:19,994 DEBUG Processing 513/669 atomic regions from SNP 153656 to 154256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:20,026 DEBUG Processing 511/639 atomic regions from SNP 153198 to 153798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:20,031 DEBUG Processing 537/706 atomic regions from SNP 160888 to 161488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,118 DEBUG Processing 359/544 atomic regions from SNP 107578 to 108178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:20,119 DEBUG Processing 353/589 atomic regions from SNP 105792 to 106392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:20,212 DEBUG Processing 514/669 atomic regions from SNP 153956 to 154556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:20,243 DEBUG Processing 512/639 atomic regions from SNP 153498 to 154098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:20,258 DEBUG Processing 538/706 atomic regions from SNP 161188 to 161788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,328 DEBUG Processing 360/544 atomic regions from SNP 107878 to 108478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:20,335 DEBUG Processing 354/589 atomic regions from SNP 106092 to 106692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:20,434 DEBUG Processing 515/669 atomic regions from SNP 154256 to 154856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:20,468 DEBUG Processing 513/639 atomic regions from SNP 153798 to 154398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:20,488 DEBUG Processing 539/706 atomic regions from SNP 161488 to 162088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,530 DEBUG Processing 361/544 atomic regions from SNP 108178 to 108778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:20,554 DEBUG Processing 355/589 atomic regions from SNP 106392 to 106992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:20,655 DEBUG Processing 516/669 atomic regions from SNP 154556 to 155156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:20,691 DEBUG Processing 514/639 atomic regions from SNP 154098 to 154698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:20,736 DEBUG Processing 362/544 atomic regions from SNP 108478 to 109078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:20,738 DEBUG Processing 540/706 atomic regions from SNP 161788 to 162388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,769 DEBUG Processing 356/589 atomic regions from SNP 106692 to 107292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:20,887 DEBUG Processing 517/669 atomic regions from SNP 154856 to 155456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:20,926 DEBUG Processing 515/639 atomic regions from SNP 154398 to 154998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:20,948 DEBUG Processing 363/544 atomic regions from SNP 108778 to 109378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:20,987 DEBUG Processing 541/706 atomic regions from SNP 162088 to 162688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,987 DEBUG Processing 357/589 atomic regions from SNP 106992 to 107592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:21,118 DEBUG Processing 518/669 atomic regions from SNP 155156 to 155756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:21,156 DEBUG Processing 516/639 atomic regions from SNP 154698 to 155298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:21,163 DEBUG Processing 364/544 atomic regions from SNP 109078 to 109678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:21,200 DEBUG Processing 358/589 atomic regions from SNP 107292 to 107892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:21,242 DEBUG Processing 542/706 atomic regions from SNP 162388 to 162988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,355 DEBUG Processing 519/669 atomic regions from SNP 155456 to 156056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:21,384 DEBUG Processing 365/544 atomic regions from SNP 109378 to 109978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:21,390 DEBUG Processing 517/639 atomic regions from SNP 154998 to 155598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:21,413 DEBUG Processing 359/589 atomic regions from SNP 107592 to 108192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:21,488 DEBUG Processing 543/706 atomic regions from SNP 162688 to 163288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,598 DEBUG Processing 520/669 atomic regions from SNP 155756 to 156356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:21,606 DEBUG Processing 366/544 atomic regions from SNP 109678 to 110278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:21,627 DEBUG Processing 518/639 atomic regions from SNP 155298 to 155898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:21,648 DEBUG Processing 360/589 atomic regions from SNP 107892 to 108492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:21,715 DEBUG Processing 544/706 atomic regions from SNP 162988 to 163588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,810 DEBUG Processing 367/544 atomic regions from SNP 109978 to 110578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:21,827 DEBUG Processing 521/669 atomic regions from SNP 156056 to 156656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:21,862 DEBUG Processing 519/639 atomic regions from SNP 155598 to 156198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:21,868 DEBUG Processing 361/589 atomic regions from SNP 108192 to 108792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:21,952 DEBUG Processing 545/706 atomic regions from SNP 163288 to 163888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,014 DEBUG Processing 368/544 atomic regions from SNP 110278 to 110878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:22,054 DEBUG Processing 522/669 atomic regions from SNP 156356 to 156956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:22,085 DEBUG Processing 520/639 atomic regions from SNP 155898 to 156498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:22,090 DEBUG Processing 362/589 atomic regions from SNP 108492 to 109092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:22,187 DEBUG Processing 546/706 atomic regions from SNP 163588 to 164188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,216 DEBUG Processing 369/544 atomic regions from SNP 110578 to 111178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:22,276 DEBUG Processing 523/669 atomic regions from SNP 156656 to 157256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:22,299 DEBUG Processing 521/639 atomic regions from SNP 156198 to 156798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:22,307 DEBUG Processing 363/589 atomic regions from SNP 108792 to 109392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:22,419 DEBUG Processing 370/544 atomic regions from SNP 110878 to 111478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:22,434 DEBUG Processing 547/706 atomic regions from SNP 163888 to 164488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,498 DEBUG Processing 524/669 atomic regions from SNP 156956 to 157556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:22,516 DEBUG Processing 522/639 atomic regions from SNP 156498 to 157098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:22,520 DEBUG Processing 364/589 atomic regions from SNP 109092 to 109692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:22,627 DEBUG Processing 371/544 atomic regions from SNP 111178 to 111778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:22,667 DEBUG Processing 548/706 atomic regions from SNP 164188 to 164788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,728 DEBUG Processing 525/669 atomic regions from SNP 157256 to 157856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:22,737 DEBUG Processing 365/589 atomic regions from SNP 109392 to 109992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:22,740 DEBUG Processing 523/639 atomic regions from SNP 156798 to 157398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:22,835 DEBUG Processing 372/544 atomic regions from SNP 111478 to 112078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:22,895 DEBUG Processing 549/706 atomic regions from SNP 164488 to 165088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,955 DEBUG Processing 366/589 atomic regions from SNP 109692 to 110292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:22,964 DEBUG Processing 526/669 atomic regions from SNP 157556 to 158156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:22,979 DEBUG Processing 524/639 atomic regions from SNP 157098 to 157698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:23,042 DEBUG Processing 373/544 atomic regions from SNP 111778 to 112378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:23,123 DEBUG Processing 550/706 atomic regions from SNP 164788 to 165388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,186 DEBUG Processing 367/589 atomic regions from SNP 109992 to 110592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:23,188 DEBUG Processing 527/669 atomic regions from SNP 157856 to 158456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:23,213 DEBUG Processing 525/639 atomic regions from SNP 157398 to 157998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:23,251 DEBUG Processing 374/544 atomic regions from SNP 112078 to 112678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:23,350 DEBUG Processing 551/706 atomic regions from SNP 165088 to 165688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,399 DEBUG Processing 368/589 atomic regions from SNP 110292 to 110892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:23,415 DEBUG Processing 528/669 atomic regions from SNP 158156 to 158756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:23,435 DEBUG Processing 526/639 atomic regions from SNP 157698 to 158298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:23,460 DEBUG Processing 375/544 atomic regions from SNP 112378 to 112978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:23,593 DEBUG Processing 552/706 atomic regions from SNP 165388 to 165988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,616 DEBUG Processing 369/589 atomic regions from SNP 110592 to 111192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:23,637 DEBUG Processing 529/669 atomic regions from SNP 158456 to 159056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:23,658 DEBUG Processing 527/639 atomic regions from SNP 157998 to 158598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:23,666 DEBUG Processing 376/544 atomic regions from SNP 112678 to 113278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:23,832 DEBUG Processing 370/589 atomic regions from SNP 110892 to 111492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:23,851 DEBUG Processing 553/706 atomic regions from SNP 165688 to 166288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,865 DEBUG Processing 530/669 atomic regions from SNP 158756 to 159356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:23,877 DEBUG Processing 377/544 atomic regions from SNP 112978 to 113578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:23,897 DEBUG Processing 528/639 atomic regions from SNP 158298 to 158898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:24,077 DEBUG Processing 371/589 atomic regions from SNP 111192 to 111792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:24,118 DEBUG Processing 378/544 atomic regions from SNP 113278 to 113878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:24,127 DEBUG Processing 531/669 atomic regions from SNP 159056 to 159656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:24,145 DEBUG Processing 529/639 atomic regions from SNP 158598 to 159198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:24,157 DEBUG Processing 554/706 atomic regions from SNP 165988 to 166588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,293 DEBUG Processing 372/589 atomic regions from SNP 111492 to 112092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:24,326 DEBUG Processing 379/544 atomic regions from SNP 113578 to 114178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:24,362 DEBUG Processing 532/669 atomic regions from SNP 159356 to 159956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:24,370 DEBUG Processing 530/639 atomic regions from SNP 158898 to 159498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:24,414 DEBUG Processing 555/706 atomic regions from SNP 166288 to 166888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,508 DEBUG Processing 373/589 atomic regions from SNP 111792 to 112392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:24,528 DEBUG Processing 380/544 atomic regions from SNP 113878 to 114478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:24,594 DEBUG Processing 531/639 atomic regions from SNP 159198 to 159798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:24,595 DEBUG Processing 533/669 atomic regions from SNP 159656 to 160256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:24,679 DEBUG Processing 556/706 atomic regions from SNP 166588 to 167188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,721 DEBUG Processing 374/589 atomic regions from SNP 112092 to 112692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:24,729 DEBUG Processing 381/544 atomic regions from SNP 114178 to 114778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:24,813 DEBUG Processing 532/639 atomic regions from SNP 159498 to 160098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:24,828 DEBUG Processing 534/669 atomic regions from SNP 159956 to 160556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:24,932 DEBUG Processing 375/589 atomic regions from SNP 112392 to 112992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:24,936 DEBUG Processing 557/706 atomic regions from SNP 166888 to 167488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,936 DEBUG Processing 382/544 atomic regions from SNP 114478 to 115078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:25,030 DEBUG Processing 533/639 atomic regions from SNP 159798 to 160398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:25,072 DEBUG Processing 535/669 atomic regions from SNP 160256 to 160856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:25,146 DEBUG Processing 376/589 atomic regions from SNP 112692 to 113292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:25,147 DEBUG Processing 383/544 atomic regions from SNP 114778 to 115378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:25,203 DEBUG Processing 558/706 atomic regions from SNP 167188 to 167788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,250 DEBUG Processing 534/639 atomic regions from SNP 160098 to 160698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:25,331 DEBUG Processing 536/669 atomic regions from SNP 160556 to 161156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:25,358 DEBUG Processing 384/544 atomic regions from SNP 115078 to 115678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:25,367 DEBUG Processing 377/589 atomic regions from SNP 112992 to 113592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:25,451 DEBUG Processing 559/706 atomic regions from SNP 167488 to 168088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,469 DEBUG Processing 535/639 atomic regions from SNP 160398 to 160998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:25,565 DEBUG Processing 385/544 atomic regions from SNP 115378 to 115978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:25,581 DEBUG Processing 537/669 atomic regions from SNP 160856 to 161456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:25,592 DEBUG Processing 378/589 atomic regions from SNP 113292 to 113892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:25,695 DEBUG Processing 536/639 atomic regions from SNP 160698 to 161298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:25,701 DEBUG Processing 560/706 atomic regions from SNP 167788 to 168388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,775 DEBUG Processing 386/544 atomic regions from SNP 115678 to 116278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:25,816 DEBUG Processing 379/589 atomic regions from SNP 113592 to 114192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:25,821 DEBUG Processing 538/669 atomic regions from SNP 161156 to 161756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:25,915 DEBUG Processing 537/639 atomic regions from SNP 160998 to 161598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:25,931 DEBUG Processing 561/706 atomic regions from SNP 168088 to 168688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,980 DEBUG Processing 387/544 atomic regions from SNP 115978 to 116578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:26,036 DEBUG Processing 380/589 atomic regions from SNP 113892 to 114492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:26,060 DEBUG Processing 539/669 atomic regions from SNP 161456 to 162056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:26,144 DEBUG Processing 538/639 atomic regions from SNP 161298 to 161898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:26,163 DEBUG Processing 562/706 atomic regions from SNP 168388 to 168988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,190 DEBUG Processing 388/544 atomic regions from SNP 116278 to 116878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:26,262 DEBUG Processing 381/589 atomic regions from SNP 114192 to 114792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:26,297 DEBUG Processing 540/669 atomic regions from SNP 161756 to 162356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:26,391 DEBUG Processing 539/639 atomic regions from SNP 161598 to 162198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:26,399 DEBUG Processing 389/544 atomic regions from SNP 116578 to 117178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:26,402 DEBUG Processing 563/706 atomic regions from SNP 168688 to 169288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,488 DEBUG Processing 382/589 atomic regions from SNP 114492 to 115092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:26,543 DEBUG Processing 541/669 atomic regions from SNP 162056 to 162656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:26,611 DEBUG Processing 390/544 atomic regions from SNP 116878 to 117478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:26,626 DEBUG Processing 540/639 atomic regions from SNP 161898 to 162498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:26,670 DEBUG Processing 564/706 atomic regions from SNP 168988 to 169588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,711 DEBUG Processing 383/589 atomic regions from SNP 114792 to 115392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:26,804 DEBUG Processing 542/669 atomic regions from SNP 162356 to 162956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:26,823 DEBUG Processing 391/544 atomic regions from SNP 117178 to 117778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:26,850 DEBUG Processing 541/639 atomic regions from SNP 162198 to 162798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:26,929 DEBUG Processing 384/589 atomic regions from SNP 115092 to 115692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:26,938 DEBUG Processing 565/706 atomic regions from SNP 169288 to 169888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,034 DEBUG Processing 392/544 atomic regions from SNP 117478 to 118078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:27,042 DEBUG Processing 543/669 atomic regions from SNP 162656 to 163256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:27,074 DEBUG Processing 542/639 atomic regions from SNP 162498 to 163098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:27,143 DEBUG Processing 385/589 atomic regions from SNP 115392 to 115992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:27,181 DEBUG Processing 566/706 atomic regions from SNP 169588 to 170188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,241 DEBUG Processing 393/544 atomic regions from SNP 117778 to 118378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:27,274 DEBUG Processing 544/669 atomic regions from SNP 162956 to 163556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:27,309 DEBUG Processing 543/639 atomic regions from SNP 162798 to 163398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:27,361 DEBUG Processing 386/589 atomic regions from SNP 115692 to 116292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:27,406 DEBUG Processing 567/706 atomic regions from SNP 169888 to 170488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,440 DEBUG Processing 394/544 atomic regions from SNP 118078 to 118678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:27,503 DEBUG Processing 545/669 atomic regions from SNP 163256 to 163856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:27,524 DEBUG Segmenting atomic regions: 2025-01-31 09:52:27,530 DEBUG Processing 544/639 atomic regions from SNP 163098 to 163698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:27,582 DEBUG Processing 387/589 atomic regions from SNP 115992 to 116592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:27,597 DEBUG Processing 1/518 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:27,639 DEBUG Processing 568/706 atomic regions from SNP 170188 to 170788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,644 DEBUG Processing 395/544 atomic regions from SNP 118378 to 118978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:27,741 DEBUG Processing 546/669 atomic regions from SNP 163556 to 164156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:27,755 DEBUG Processing 545/639 atomic regions from SNP 163398 to 163998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:27,806 DEBUG Processing 2/518 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:27,809 DEBUG Processing 388/589 atomic regions from SNP 116292 to 116892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:27,854 DEBUG Processing 396/544 atomic regions from SNP 118678 to 119278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:27,873 DEBUG Processing 569/706 atomic regions from SNP 170488 to 171088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,968 DEBUG Processing 546/639 atomic regions from SNP 163698 to 164298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:27,987 DEBUG Processing 547/669 atomic regions from SNP 163856 to 164456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:28,008 DEBUG Processing 3/518 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,029 DEBUG Processing 389/589 atomic regions from SNP 116592 to 117192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:28,060 DEBUG Processing 397/544 atomic regions from SNP 118978 to 119578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:28,103 DEBUG Processing 570/706 atomic regions from SNP 170788 to 171388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,185 DEBUG Processing 547/639 atomic regions from SNP 163998 to 164598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:28,209 DEBUG Processing 4/518 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,222 DEBUG Processing 548/669 atomic regions from SNP 164156 to 164756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:28,243 DEBUG Processing 390/589 atomic regions from SNP 116892 to 117492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:28,265 DEBUG Processing 398/544 atomic regions from SNP 119278 to 119878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:28,331 DEBUG Processing 571/706 atomic regions from SNP 171088 to 171688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,409 DEBUG Processing 548/639 atomic regions from SNP 164298 to 164898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:28,421 DEBUG Processing 5/518 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,453 DEBUG Processing 549/669 atomic regions from SNP 164456 to 165056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:28,456 DEBUG Processing 391/589 atomic regions from SNP 117192 to 117792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:28,475 DEBUG Processing 399/544 atomic regions from SNP 119578 to 120178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:28,565 DEBUG Processing 572/706 atomic regions from SNP 171388 to 171988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,634 DEBUG Processing 6/518 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,637 DEBUG Processing 549/639 atomic regions from SNP 164598 to 165198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:28,673 DEBUG Processing 392/589 atomic regions from SNP 117492 to 118092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:28,685 DEBUG Processing 400/544 atomic regions from SNP 119878 to 120478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:28,685 DEBUG Processing 550/669 atomic regions from SNP 164756 to 165356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:28,819 DEBUG Processing 573/706 atomic regions from SNP 171688 to 172288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,854 DEBUG Processing 7/518 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,872 DEBUG Processing 550/639 atomic regions from SNP 164898 to 165498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:28,899 DEBUG Processing 393/589 atomic regions from SNP 117792 to 118392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:28,904 DEBUG Processing 401/544 atomic regions from SNP 120178 to 120778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:28,922 DEBUG Processing 551/669 atomic regions from SNP 165056 to 165656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:29,067 DEBUG Processing 8/518 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,079 DEBUG Processing 574/706 atomic regions from SNP 171988 to 172588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,106 DEBUG Processing 551/639 atomic regions from SNP 165198 to 165798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:29,125 DEBUG Processing 402/544 atomic regions from SNP 120478 to 121078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:29,130 DEBUG Processing 394/589 atomic regions from SNP 118092 to 118692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:29,164 DEBUG Processing 552/669 atomic regions from SNP 165356 to 165956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:29,279 DEBUG Processing 9/518 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,329 DEBUG Processing 575/706 atomic regions from SNP 172288 to 172888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,344 DEBUG Processing 403/544 atomic regions from SNP 120778 to 121378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:29,352 DEBUG Processing 552/639 atomic regions from SNP 165498 to 166098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:29,356 DEBUG Processing 395/589 atomic regions from SNP 118392 to 118992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:29,406 DEBUG Processing 553/669 atomic regions from SNP 165656 to 166256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:29,487 DEBUG Processing 10/518 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,560 DEBUG Processing 404/544 atomic regions from SNP 121078 to 121678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:29,573 DEBUG Processing 396/589 atomic regions from SNP 118692 to 119292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:29,578 DEBUG Processing 576/706 atomic regions from SNP 172588 to 173188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,599 DEBUG Processing 553/639 atomic regions from SNP 165798 to 166398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:29,643 DEBUG Processing 554/669 atomic regions from SNP 165956 to 166556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:29,687 DEBUG Processing 11/518 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,761 DEBUG Processing 405/544 atomic regions from SNP 121378 to 121978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:29,776 DEBUG Processing 397/589 atomic regions from SNP 118992 to 119592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:29,810 DEBUG Processing 577/706 atomic regions from SNP 172888 to 173488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,816 DEBUG Processing 554/639 atomic regions from SNP 166098 to 166698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:29,875 DEBUG Processing 555/669 atomic regions from SNP 166256 to 166856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:29,898 DEBUG Processing 12/518 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,967 DEBUG Processing 406/544 atomic regions from SNP 121678 to 122278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:29,989 DEBUG Processing 398/589 atomic regions from SNP 119292 to 119892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:30,036 DEBUG Processing 555/639 atomic regions from SNP 166398 to 166998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:30,056 DEBUG Processing 578/706 atomic regions from SNP 173188 to 173788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,100 DEBUG Processing 556/669 atomic regions from SNP 166556 to 167156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:30,108 DEBUG Processing 13/518 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:30,174 DEBUG Processing 407/544 atomic regions from SNP 121978 to 122578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:30,215 DEBUG Processing 399/589 atomic regions from SNP 119592 to 120192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:30,257 DEBUG Processing 556/639 atomic regions from SNP 166698 to 167298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:30,318 DEBUG Processing 14/518 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:30,319 DEBUG Processing 579/706 atomic regions from SNP 173488 to 174088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,353 DEBUG Processing 557/669 atomic regions from SNP 166856 to 167456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:30,383 DEBUG Processing 408/544 atomic regions from SNP 122278 to 122878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:30,431 DEBUG Processing 400/589 atomic regions from SNP 119892 to 120492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:30,484 DEBUG Processing 557/639 atomic regions from SNP 166998 to 167598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:30,527 DEBUG Processing 15/518 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:30,567 DEBUG Processing 580/706 atomic regions from SNP 173788 to 174388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,593 DEBUG Processing 409/544 atomic regions from SNP 122578 to 123178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:30,605 DEBUG Processing 558/669 atomic regions from SNP 167156 to 167756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:30,663 DEBUG Processing 401/589 atomic regions from SNP 120192 to 120792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:30,706 DEBUG Processing 558/639 atomic regions from SNP 167298 to 167898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:30,731 DEBUG Processing 16/518 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:30,806 DEBUG Processing 410/544 atomic regions from SNP 122878 to 123478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:30,821 DEBUG Processing 581/706 atomic regions from SNP 174088 to 174688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,842 DEBUG Processing 559/669 atomic regions from SNP 167456 to 168056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:30,913 DEBUG Processing 402/589 atomic regions from SNP 120492 to 121092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:30,930 DEBUG Processing 17/518 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:30,939 DEBUG Processing 559/639 atomic regions from SNP 167598 to 168198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:31,015 DEBUG Processing 411/544 atomic regions from SNP 123178 to 123778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:31,074 DEBUG Processing 582/706 atomic regions from SNP 174388 to 174988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,075 DEBUG Processing 560/669 atomic regions from SNP 167756 to 168356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:31,133 DEBUG Processing 403/589 atomic regions from SNP 120792 to 121392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:31,137 DEBUG Processing 18/518 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:31,166 DEBUG Processing 560/639 atomic regions from SNP 167898 to 168498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:31,220 DEBUG Processing 412/544 atomic regions from SNP 123478 to 124078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:31,307 DEBUG Processing 561/669 atomic regions from SNP 168056 to 168656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:31,307 DEBUG Processing 583/706 atomic regions from SNP 174688 to 175288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,348 DEBUG Processing 404/589 atomic regions from SNP 121092 to 121692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:31,349 DEBUG Processing 19/518 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:31,389 DEBUG Processing 561/639 atomic regions from SNP 168198 to 168798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:31,423 DEBUG Processing 413/544 atomic regions from SNP 123778 to 124378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:31,530 DEBUG Processing 562/669 atomic regions from SNP 168356 to 168956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:31,552 DEBUG Processing 584/706 atomic regions from SNP 174988 to 175588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,558 DEBUG Processing 20/518 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:31,577 DEBUG Processing 405/589 atomic regions from SNP 121392 to 121992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:31,617 DEBUG Processing 562/639 atomic regions from SNP 168498 to 169098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:31,632 DEBUG Processing 414/544 atomic regions from SNP 124078 to 124678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:31,762 DEBUG Processing 21/518 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:31,771 DEBUG Processing 563/669 atomic regions from SNP 168656 to 169256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:31,802 DEBUG Processing 585/706 atomic regions from SNP 175288 to 175888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,806 DEBUG Processing 406/589 atomic regions from SNP 121692 to 122292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:31,847 DEBUG Processing 563/639 atomic regions from SNP 168798 to 169398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:31,848 DEBUG Processing 415/544 atomic regions from SNP 124378 to 124978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:31,960 DEBUG Processing 22/518 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,006 DEBUG Processing 564/669 atomic regions from SNP 168956 to 169556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:32,025 DEBUG Processing 407/589 atomic regions from SNP 121992 to 122592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:32,069 DEBUG Processing 416/544 atomic regions from SNP 124678 to 125278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:32,074 DEBUG Processing 586/706 atomic regions from SNP 175588 to 176188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,083 DEBUG Processing 564/639 atomic regions from SNP 169098 to 169698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:32,166 DEBUG Processing 23/518 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,238 DEBUG Processing 565/669 atomic regions from SNP 169256 to 169856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:32,240 DEBUG Processing 408/589 atomic regions from SNP 122292 to 122892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:32,278 DEBUG Processing 417/544 atomic regions from SNP 124978 to 125578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:32,309 DEBUG Processing 565/639 atomic regions from SNP 169398 to 169998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:32,341 DEBUG Processing 587/706 atomic regions from SNP 175888 to 176488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,368 DEBUG Processing 24/518 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,448 DEBUG Processing 409/589 atomic regions from SNP 122592 to 123192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:32,463 DEBUG Processing 566/669 atomic regions from SNP 169556 to 170156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:32,480 DEBUG Processing 418/544 atomic regions from SNP 125278 to 125878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:32,538 DEBUG Processing 566/639 atomic regions from SNP 169698 to 170298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:32,578 DEBUG Processing 25/518 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,584 DEBUG Processing 588/706 atomic regions from SNP 176188 to 176788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,661 DEBUG Processing 410/589 atomic regions from SNP 122892 to 123492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:32,681 DEBUG Processing 419/544 atomic regions from SNP 125578 to 126178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:32,697 DEBUG Processing 567/669 atomic regions from SNP 169856 to 170456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:32,776 DEBUG Processing 567/639 atomic regions from SNP 169998 to 170598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:32,800 DEBUG Processing 26/518 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,832 DEBUG Processing 589/706 atomic regions from SNP 176488 to 177088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,881 DEBUG Processing 411/589 atomic regions from SNP 123192 to 123792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:32,894 DEBUG Processing 420/544 atomic regions from SNP 125878 to 126478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:32,927 DEBUG Processing 568/669 atomic regions from SNP 170156 to 170756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:33,002 DEBUG Processing 568/639 atomic regions from SNP 170298 to 170898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:33,012 DEBUG Processing 27/518 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,074 DEBUG Processing 590/706 atomic regions from SNP 176788 to 177388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,098 DEBUG Processing 412/589 atomic regions from SNP 123492 to 124092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:33,104 DEBUG Processing 421/544 atomic regions from SNP 126178 to 126778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:33,164 DEBUG Processing 569/669 atomic regions from SNP 170456 to 171056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:33,236 DEBUG Processing 28/518 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,250 DEBUG Processing 569/639 atomic regions from SNP 170598 to 171198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:33,331 DEBUG Processing 413/589 atomic regions from SNP 123792 to 124392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:33,340 DEBUG Processing 422/544 atomic regions from SNP 126478 to 127078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:33,393 DEBUG Processing 591/706 atomic regions from SNP 177088 to 177688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,423 DEBUG Processing 570/669 atomic regions from SNP 170756 to 171356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:33,440 DEBUG Processing 29/518 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,482 DEBUG Processing 570/639 atomic regions from SNP 170898 to 171498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:33,556 DEBUG Processing 414/589 atomic regions from SNP 124092 to 124692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:33,559 DEBUG Processing 423/544 atomic regions from SNP 126778 to 127378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:33,646 DEBUG Processing 592/706 atomic regions from SNP 177388 to 177988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,647 DEBUG Processing 30/518 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,660 DEBUG Processing 571/669 atomic regions from SNP 171056 to 171656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:33,698 DEBUG Processing 571/639 atomic regions from SNP 171198 to 171798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:33,764 DEBUG Processing 415/589 atomic regions from SNP 124392 to 124992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:33,771 DEBUG Processing 424/544 atomic regions from SNP 127078 to 127678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:33,850 DEBUG Processing 31/518 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,875 DEBUG Processing 593/706 atomic regions from SNP 177688 to 178288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,879 DEBUG Processing 572/669 atomic regions from SNP 171356 to 171956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:33,909 DEBUG Processing 572/639 atomic regions from SNP 171498 to 172098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:33,969 DEBUG Processing 416/589 atomic regions from SNP 124692 to 125292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:33,969 DEBUG Processing 425/544 atomic regions from SNP 127378 to 127978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:34,063 DEBUG Processing 32/518 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,102 DEBUG Processing 573/669 atomic regions from SNP 171656 to 172256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:34,111 DEBUG Processing 594/706 atomic regions from SNP 177988 to 178588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,130 DEBUG Processing 573/639 atomic regions from SNP 171798 to 172398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:34,170 DEBUG Processing 426/544 atomic regions from SNP 127678 to 128278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:34,179 DEBUG Processing 417/589 atomic regions from SNP 124992 to 125592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:34,275 DEBUG Processing 33/518 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,330 DEBUG Processing 574/669 atomic regions from SNP 171956 to 172556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:34,352 DEBUG Processing 595/706 atomic regions from SNP 178288 to 178888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,358 DEBUG Processing 574/639 atomic regions from SNP 172098 to 172698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:34,377 DEBUG Processing 427/544 atomic regions from SNP 127978 to 128578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:34,408 DEBUG Processing 418/589 atomic regions from SNP 125292 to 125892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:34,484 DEBUG Processing 34/518 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,555 DEBUG Processing 575/669 atomic regions from SNP 172256 to 172856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:34,590 DEBUG Processing 575/639 atomic regions from SNP 172398 to 172998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:34,594 DEBUG Processing 428/544 atomic regions from SNP 128278 to 128878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:34,595 DEBUG Processing 596/706 atomic regions from SNP 178588 to 179188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,652 DEBUG Processing 419/589 atomic regions from SNP 125592 to 126192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:34,695 DEBUG Processing 35/518 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,804 DEBUG Processing 576/669 atomic regions from SNP 172556 to 173156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:34,825 DEBUG Processing 429/544 atomic regions from SNP 128578 to 129178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:34,830 DEBUG Processing 576/639 atomic regions from SNP 172698 to 173298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:34,847 DEBUG Processing 597/706 atomic regions from SNP 178888 to 179488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,908 DEBUG Processing 36/518 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,916 DEBUG Processing 420/589 atomic regions from SNP 125892 to 126492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:35,046 DEBUG Processing 430/544 atomic regions from SNP 128878 to 129478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:35,055 DEBUG Processing 577/669 atomic regions from SNP 172856 to 173456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:35,066 DEBUG Processing 577/639 atomic regions from SNP 172998 to 173598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:35,092 DEBUG Processing 598/706 atomic regions from SNP 179188 to 179788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,125 DEBUG Processing 37/518 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:35,171 DEBUG Processing 421/589 atomic regions from SNP 126192 to 126792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:35,269 DEBUG Processing 431/544 atomic regions from SNP 129178 to 129778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:35,291 DEBUG Processing 578/669 atomic regions from SNP 173156 to 173756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:35,307 DEBUG Processing 578/639 atomic regions from SNP 173298 to 173898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:35,337 DEBUG Processing 599/706 atomic regions from SNP 179488 to 180088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,341 DEBUG Processing 38/518 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:35,416 DEBUG Processing 422/589 atomic regions from SNP 126492 to 127092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:35,483 DEBUG Processing 432/544 atomic regions from SNP 129478 to 130078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:35,528 DEBUG Processing 579/669 atomic regions from SNP 173456 to 174056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:35,542 DEBUG Processing 579/639 atomic regions from SNP 173598 to 174198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:35,560 DEBUG Processing 39/518 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:35,585 DEBUG Processing 600/706 atomic regions from SNP 179788 to 180388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,662 DEBUG Processing 423/589 atomic regions from SNP 126792 to 127392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:35,687 DEBUG Processing 433/544 atomic regions from SNP 129778 to 130378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:35,762 DEBUG Processing 580/669 atomic regions from SNP 173756 to 174356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:35,774 DEBUG Processing 580/639 atomic regions from SNP 173898 to 174498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:35,779 DEBUG Processing 40/518 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:35,827 DEBUG Processing 601/706 atomic regions from SNP 180088 to 180688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,890 DEBUG Processing 434/544 atomic regions from SNP 130078 to 130678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:35,910 DEBUG Processing 424/589 atomic regions from SNP 127092 to 127692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:35,989 DEBUG Processing 41/518 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:35,990 DEBUG Processing 581/669 atomic regions from SNP 174056 to 174656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:35,998 DEBUG Processing 581/639 atomic regions from SNP 174198 to 174798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:36,066 DEBUG Processing 602/706 atomic regions from SNP 180388 to 180988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,099 DEBUG Processing 435/544 atomic regions from SNP 130378 to 130978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:36,152 DEBUG Processing 425/589 atomic regions from SNP 127392 to 127992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:36,199 DEBUG Processing 42/518 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,218 DEBUG Processing 582/669 atomic regions from SNP 174356 to 174956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:36,222 DEBUG Processing 582/639 atomic regions from SNP 174498 to 175098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:36,302 DEBUG Processing 603/706 atomic regions from SNP 180688 to 181288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,311 DEBUG Processing 436/544 atomic regions from SNP 130678 to 131278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:36,370 DEBUG Processing 426/589 atomic regions from SNP 127692 to 128292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:36,409 DEBUG Processing 43/518 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,447 DEBUG Processing 583/669 atomic regions from SNP 174656 to 175256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:36,450 DEBUG Processing 583/639 atomic regions from SNP 174798 to 175398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:36,520 DEBUG Processing 437/544 atomic regions from SNP 130978 to 131578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:36,535 DEBUG Processing 604/706 atomic regions from SNP 180988 to 181588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,602 DEBUG Processing 427/589 atomic regions from SNP 127992 to 128592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:36,615 DEBUG Processing 44/518 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,671 DEBUG Processing 584/639 atomic regions from SNP 175098 to 175698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:36,682 DEBUG Processing 584/669 atomic regions from SNP 174956 to 175556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:36,729 DEBUG Processing 438/544 atomic regions from SNP 131278 to 131878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:36,766 DEBUG Processing 605/706 atomic regions from SNP 181288 to 181888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,817 DEBUG Processing 45/518 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,844 DEBUG Processing 428/589 atomic regions from SNP 128292 to 128892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:36,897 DEBUG Processing 585/639 atomic regions from SNP 175398 to 175998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:36,914 DEBUG Processing 585/669 atomic regions from SNP 175256 to 175856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:36,940 DEBUG Processing 439/544 atomic regions from SNP 131578 to 132178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:36,997 DEBUG Processing 606/706 atomic regions from SNP 181588 to 182188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,025 DEBUG Processing 46/518 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,056 DEBUG Processing 429/589 atomic regions from SNP 128592 to 129192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:37,137 DEBUG Processing 586/639 atomic regions from SNP 175698 to 176298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:37,150 DEBUG Processing 586/669 atomic regions from SNP 175556 to 176156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,151 DEBUG Processing 440/544 atomic regions from SNP 131878 to 132478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:37,231 DEBUG Processing 607/706 atomic regions from SNP 181888 to 182488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,233 DEBUG Processing 47/518 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,291 DEBUG Processing 430/589 atomic regions from SNP 128892 to 129492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:37,372 DEBUG Processing 441/544 atomic regions from SNP 132178 to 132778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:37,387 DEBUG Processing 587/669 atomic regions from SNP 175856 to 176456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,395 DEBUG Processing 587/639 atomic regions from SNP 175998 to 176598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:37,444 DEBUG Processing 48/518 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,471 DEBUG Processing 608/706 atomic regions from SNP 182188 to 182788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,535 DEBUG Processing 431/589 atomic regions from SNP 129192 to 129792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:37,591 DEBUG Processing 442/544 atomic regions from SNP 132478 to 133078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:37,636 DEBUG Processing 588/669 atomic regions from SNP 176156 to 176756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,655 DEBUG Processing 588/639 atomic regions from SNP 176298 to 176898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:37,669 DEBUG Processing 49/518 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,716 DEBUG Processing 609/706 atomic regions from SNP 182488 to 183088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,771 DEBUG Processing 432/589 atomic regions from SNP 129492 to 130092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:37,805 DEBUG Processing 443/544 atomic regions from SNP 132778 to 133378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:37,871 DEBUG Processing 589/669 atomic regions from SNP 176456 to 177056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,890 DEBUG Processing 50/518 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,920 DEBUG Processing 589/639 atomic regions from SNP 176598 to 177198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:37,969 DEBUG Processing 610/706 atomic regions from SNP 182788 to 183388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,019 DEBUG Processing 444/544 atomic regions from SNP 133078 to 133678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:38,031 DEBUG Processing 433/589 atomic regions from SNP 129792 to 130392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:38,103 DEBUG Processing 51/518 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,107 DEBUG Processing 590/669 atomic regions from SNP 176756 to 177356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,179 DEBUG Processing 590/639 atomic regions from SNP 176898 to 177498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:38,223 DEBUG Processing 611/706 atomic regions from SNP 183088 to 183688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,234 DEBUG Processing 445/544 atomic regions from SNP 133378 to 133978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:38,278 DEBUG Processing 434/589 atomic regions from SNP 130092 to 130692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:38,319 DEBUG Processing 52/518 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,341 DEBUG Processing 591/669 atomic regions from SNP 177056 to 177656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,426 DEBUG Processing 591/639 atomic regions from SNP 177198 to 177798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:38,454 DEBUG Processing 446/544 atomic regions from SNP 133678 to 134278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:38,478 DEBUG Processing 612/706 atomic regions from SNP 183388 to 183988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,527 DEBUG Processing 435/589 atomic regions from SNP 130392 to 130992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:38,535 DEBUG Processing 53/518 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,575 DEBUG Processing 592/669 atomic regions from SNP 177356 to 177956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,669 DEBUG Processing 447/544 atomic regions from SNP 133978 to 134578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:38,669 DEBUG Processing 592/639 atomic regions from SNP 177498 to 178098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:38,724 DEBUG Processing 613/706 atomic regions from SNP 183688 to 184288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,745 DEBUG Processing 54/518 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,763 DEBUG Processing 436/589 atomic regions from SNP 130692 to 131292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:38,801 DEBUG Processing 593/669 atomic regions from SNP 177656 to 178256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,883 DEBUG Processing 448/544 atomic regions from SNP 134278 to 134878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:38,918 DEBUG Processing 593/639 atomic regions from SNP 177798 to 178398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:38,957 DEBUG Processing 55/518 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,974 DEBUG Processing 614/706 atomic regions from SNP 183988 to 184588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,017 DEBUG Processing 437/589 atomic regions from SNP 130992 to 131592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:39,045 DEBUG Processing 594/669 atomic regions from SNP 177956 to 178556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,092 DEBUG Processing 449/544 atomic regions from SNP 134578 to 135178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:39,161 DEBUG Processing 594/639 atomic regions from SNP 178098 to 178698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:39,190 DEBUG Processing 56/518 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,221 DEBUG Processing 615/706 atomic regions from SNP 184288 to 184888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,275 DEBUG Processing 438/589 atomic regions from SNP 131292 to 131892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:39,280 DEBUG Processing 595/669 atomic regions from SNP 178256 to 178856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,308 DEBUG Processing 450/544 atomic regions from SNP 134878 to 135478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:39,405 DEBUG Processing 57/518 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,414 DEBUG Processing 595/639 atomic regions from SNP 178398 to 178998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:39,474 DEBUG Processing 616/706 atomic regions from SNP 184588 to 185188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,522 DEBUG Processing 596/669 atomic regions from SNP 178556 to 179156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,523 DEBUG Processing 451/544 atomic regions from SNP 135178 to 135778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:39,531 DEBUG Processing 439/589 atomic regions from SNP 131592 to 132192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:39,619 DEBUG Processing 58/518 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,665 DEBUG Processing 596/639 atomic regions from SNP 178698 to 179298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:39,713 DEBUG Processing 617/706 atomic regions from SNP 184888 to 185488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,740 DEBUG Processing 452/544 atomic regions from SNP 135478 to 136078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:39,765 DEBUG Processing 597/669 atomic regions from SNP 178856 to 179456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,789 DEBUG Processing 440/589 atomic regions from SNP 131892 to 132492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:39,833 DEBUG Processing 59/518 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,896 DEBUG Processing 597/639 atomic regions from SNP 178998 to 179598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:39,953 DEBUG Processing 618/706 atomic regions from SNP 185188 to 185788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,954 DEBUG Processing 453/544 atomic regions from SNP 135778 to 136378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:40,008 DEBUG Processing 598/669 atomic regions from SNP 179156 to 179756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,038 DEBUG Processing 441/589 atomic regions from SNP 132192 to 132792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:40,048 DEBUG Processing 60/518 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,125 DEBUG Processing 598/639 atomic regions from SNP 179298 to 179898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:40,164 DEBUG Processing 454/544 atomic regions from SNP 136078 to 136678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:40,190 DEBUG Processing 619/706 atomic regions from SNP 185488 to 186088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,245 DEBUG Processing 599/669 atomic regions from SNP 179456 to 180056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,258 DEBUG Processing 61/518 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,290 DEBUG Processing 442/589 atomic regions from SNP 132492 to 133092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:40,354 DEBUG Processing 599/639 atomic regions from SNP 179598 to 180198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:40,376 DEBUG Processing 455/544 atomic regions from SNP 136378 to 136978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:40,423 DEBUG Processing 620/706 atomic regions from SNP 185788 to 186388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,464 DEBUG Processing 62/518 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,478 DEBUG Processing 600/669 atomic regions from SNP 179756 to 180356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,541 DEBUG Processing 443/589 atomic regions from SNP 132792 to 133392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:40,592 DEBUG Processing 456/544 atomic regions from SNP 136678 to 137278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:40,622 DEBUG Processing 600/639 atomic regions from SNP 179898 to 180498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:40,659 DEBUG Processing 621/706 atomic regions from SNP 186088 to 186688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,667 DEBUG Processing 63/518 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,712 DEBUG Processing 601/669 atomic regions from SNP 180056 to 180656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,792 DEBUG Processing 444/589 atomic regions from SNP 133092 to 133692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:40,809 DEBUG Processing 457/544 atomic regions from SNP 136978 to 137578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:40,877 DEBUG Processing 64/518 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,891 DEBUG Processing 601/639 atomic regions from SNP 180198 to 180798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:40,900 DEBUG Processing 622/706 atomic regions from SNP 186388 to 186988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,942 DEBUG Processing 602/669 atomic regions from SNP 180356 to 180956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,019 DEBUG Processing 458/544 atomic regions from SNP 137278 to 137878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:41,047 DEBUG Processing 445/589 atomic regions from SNP 133392 to 133992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:41,094 DEBUG Processing 65/518 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,141 DEBUG Processing 623/706 atomic regions from SNP 186688 to 187288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,152 DEBUG Processing 602/639 atomic regions from SNP 180498 to 181098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:41,168 DEBUG Processing 603/669 atomic regions from SNP 180656 to 181256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,224 DEBUG Processing 459/544 atomic regions from SNP 137578 to 138178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:41,291 DEBUG Processing 446/589 atomic regions from SNP 133692 to 134292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:41,311 DEBUG Processing 66/518 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,380 DEBUG Processing 624/706 atomic regions from SNP 186988 to 187588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,401 DEBUG Processing 604/669 atomic regions from SNP 180956 to 181556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,415 DEBUG Processing 603/639 atomic regions from SNP 180798 to 181398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:41,428 DEBUG Processing 460/544 atomic regions from SNP 137878 to 138478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:41,512 DEBUG Processing 447/589 atomic regions from SNP 133992 to 134592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:41,523 DEBUG Processing 67/518 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,622 DEBUG Processing 625/706 atomic regions from SNP 187288 to 187888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,636 DEBUG Processing 605/669 atomic regions from SNP 181256 to 181856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,643 DEBUG Processing 461/544 atomic regions from SNP 138178 to 138778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:41,670 DEBUG Processing 604/639 atomic regions from SNP 181098 to 181698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:41,738 DEBUG Processing 68/518 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,744 DEBUG Processing 448/589 atomic regions from SNP 134292 to 134892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:41,862 DEBUG Processing 626/706 atomic regions from SNP 187588 to 188188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,863 DEBUG Processing 462/544 atomic regions from SNP 138478 to 139078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:41,878 DEBUG Processing 606/669 atomic regions from SNP 181556 to 182156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,900 DEBUG Processing 605/639 atomic regions from SNP 181398 to 181998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:41,948 DEBUG Processing 69/518 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,967 DEBUG Processing 449/589 atomic regions from SNP 134592 to 135192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:42,079 DEBUG Processing 463/544 atomic regions from SNP 138778 to 139378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:42,104 DEBUG Processing 627/706 atomic regions from SNP 187888 to 188488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,113 DEBUG Processing 607/669 atomic regions from SNP 181856 to 182456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,132 DEBUG Processing 606/639 atomic regions from SNP 181698 to 182298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:42,158 DEBUG Processing 70/518 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,192 DEBUG Processing 450/589 atomic regions from SNP 134892 to 135492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:42,287 DEBUG Processing 464/544 atomic regions from SNP 139078 to 139678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:42,342 DEBUG Processing 628/706 atomic regions from SNP 188188 to 188788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,343 DEBUG Processing 608/669 atomic regions from SNP 182156 to 182756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,361 DEBUG Processing 607/639 atomic regions from SNP 181998 to 182598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:42,371 DEBUG Processing 71/518 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,419 DEBUG Processing 451/589 atomic regions from SNP 135192 to 135792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:42,495 DEBUG Processing 465/544 atomic regions from SNP 139378 to 139978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:42,573 DEBUG Processing 609/669 atomic regions from SNP 182456 to 183056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,579 DEBUG Processing 629/706 atomic regions from SNP 188488 to 189088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,581 DEBUG Processing 72/518 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,587 DEBUG Processing 608/639 atomic regions from SNP 182298 to 182898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:42,643 DEBUG Processing 452/589 atomic regions from SNP 135492 to 136092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:42,704 DEBUG Processing 466/544 atomic regions from SNP 139678 to 140278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:42,795 DEBUG Processing 73/518 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,808 DEBUG Processing 610/669 atomic regions from SNP 182756 to 183356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,816 DEBUG Processing 609/639 atomic regions from SNP 182598 to 183198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:42,824 DEBUG Processing 630/706 atomic regions from SNP 188788 to 189388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,887 DEBUG Processing 453/589 atomic regions from SNP 135792 to 136392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:42,912 DEBUG Processing 467/544 atomic regions from SNP 139978 to 140578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:43,008 DEBUG Processing 74/518 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,043 DEBUG Processing 610/639 atomic regions from SNP 182898 to 183498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:43,053 DEBUG Processing 611/669 atomic regions from SNP 183056 to 183656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,073 DEBUG Processing 631/706 atomic regions from SNP 189088 to 189688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,125 DEBUG Processing 468/544 atomic regions from SNP 140278 to 140878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:43,129 DEBUG Processing 454/589 atomic regions from SNP 136092 to 136692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:43,219 DEBUG Processing 75/518 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,269 DEBUG Processing 611/639 atomic regions from SNP 183198 to 183798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:43,293 DEBUG Processing 612/669 atomic regions from SNP 183356 to 183956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,312 DEBUG Processing 632/706 atomic regions from SNP 189388 to 189988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,340 DEBUG Processing 469/544 atomic regions from SNP 140578 to 141178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:43,388 DEBUG Processing 455/589 atomic regions from SNP 136392 to 136992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:43,429 DEBUG Processing 76/518 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,493 DEBUG Processing 612/639 atomic regions from SNP 183498 to 184098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:43,529 DEBUG Processing 613/669 atomic regions from SNP 183656 to 184256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,548 DEBUG Processing 633/706 atomic regions from SNP 189688 to 190288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,554 DEBUG Processing 470/544 atomic regions from SNP 140878 to 141478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:43,641 DEBUG Processing 77/518 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,645 DEBUG Processing 456/589 atomic regions from SNP 136692 to 137292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:43,717 DEBUG Processing 613/639 atomic regions from SNP 183798 to 184398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:43,761 DEBUG Processing 614/669 atomic regions from SNP 183956 to 184556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,765 DEBUG Processing 471/544 atomic regions from SNP 141178 to 141778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:43,784 DEBUG Processing 634/706 atomic regions from SNP 189988 to 190588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,855 DEBUG Processing 78/518 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,898 DEBUG Processing 457/589 atomic regions from SNP 136992 to 137592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:43,945 DEBUG Processing 614/639 atomic regions from SNP 184098 to 184698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:43,973 DEBUG Processing 472/544 atomic regions from SNP 141478 to 142078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:43,987 DEBUG Processing 615/669 atomic regions from SNP 184256 to 184856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,018 DEBUG Processing 635/706 atomic regions from SNP 190288 to 190888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,066 DEBUG Processing 79/518 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,151 DEBUG Processing 458/589 atomic regions from SNP 137292 to 137892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:44,175 DEBUG Processing 615/639 atomic regions from SNP 184398 to 184998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:44,186 DEBUG Processing 473/544 atomic regions from SNP 141778 to 142378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:44,215 DEBUG Processing 616/669 atomic regions from SNP 184556 to 185156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,253 DEBUG Processing 636/706 atomic regions from SNP 190588 to 191188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,271 DEBUG Processing 80/518 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,395 DEBUG Processing 459/589 atomic regions from SNP 137592 to 138192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:44,403 DEBUG Processing 474/544 atomic regions from SNP 142078 to 142678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:44,407 DEBUG Processing 616/639 atomic regions from SNP 184698 to 185298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:44,446 DEBUG Processing 617/669 atomic regions from SNP 184856 to 185456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,477 DEBUG Processing 81/518 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,488 DEBUG Processing 637/706 atomic regions from SNP 190888 to 191488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,614 DEBUG Processing 460/589 atomic regions from SNP 137892 to 138492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:44,617 DEBUG Processing 475/544 atomic regions from SNP 142378 to 142978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:44,636 DEBUG Processing 617/639 atomic regions from SNP 184998 to 185598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:44,681 DEBUG Processing 618/669 atomic regions from SNP 185156 to 185756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,685 DEBUG Processing 82/518 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,723 DEBUG Processing 638/706 atomic regions from SNP 191188 to 191788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,827 DEBUG Processing 461/589 atomic regions from SNP 138192 to 138792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:44,829 DEBUG Processing 476/544 atomic regions from SNP 142678 to 143278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:44,866 DEBUG Processing 618/639 atomic regions from SNP 185298 to 185898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:44,894 DEBUG Processing 83/518 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,909 DEBUG Processing 619/669 atomic regions from SNP 185456 to 186056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,958 DEBUG Processing 639/706 atomic regions from SNP 191488 to 192088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,040 DEBUG Processing 477/544 atomic regions from SNP 142978 to 143578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:45,050 DEBUG Processing 462/589 atomic regions from SNP 138492 to 139092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:45,108 DEBUG Processing 84/518 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,110 DEBUG Processing 619/639 atomic regions from SNP 185598 to 186198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:45,133 DEBUG Processing 620/669 atomic regions from SNP 185756 to 186356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,196 DEBUG Processing 640/706 atomic regions from SNP 191788 to 192388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,255 DEBUG Processing 478/544 atomic regions from SNP 143278 to 143878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:45,300 DEBUG Processing 463/589 atomic regions from SNP 138792 to 139392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:45,324 DEBUG Processing 85/518 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,341 DEBUG Processing 620/639 atomic regions from SNP 185898 to 186498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:45,360 DEBUG Processing 621/669 atomic regions from SNP 186056 to 186656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,436 DEBUG Processing 641/706 atomic regions from SNP 192088 to 192688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,471 DEBUG Processing 479/544 atomic regions from SNP 143578 to 144178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:45,534 DEBUG Processing 464/589 atomic regions from SNP 139092 to 139692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:45,542 DEBUG Processing 86/518 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,586 DEBUG Processing 621/639 atomic regions from SNP 186198 to 186798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:45,588 DEBUG Processing 622/669 atomic regions from SNP 186356 to 186956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,674 DEBUG Processing 642/706 atomic regions from SNP 192388 to 192988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,708 DEBUG Processing 480/544 atomic regions from SNP 143878 to 144478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:45,753 DEBUG Processing 87/518 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,774 DEBUG Processing 465/589 atomic regions from SNP 139392 to 139992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:45,814 DEBUG Processing 622/639 atomic regions from SNP 186498 to 187098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:45,839 DEBUG Processing 623/669 atomic regions from SNP 186656 to 187256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,911 DEBUG Processing 643/706 atomic regions from SNP 192688 to 193288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,925 DEBUG Processing 481/544 atomic regions from SNP 144178 to 144778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:45,964 DEBUG Processing 88/518 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,021 DEBUG Processing 466/589 atomic regions from SNP 139692 to 140292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:46,042 DEBUG Processing 623/639 atomic regions from SNP 186798 to 187398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:46,078 DEBUG Processing 624/669 atomic regions from SNP 186956 to 187556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,140 DEBUG Processing 482/544 atomic regions from SNP 144478 to 145078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:46,145 DEBUG Processing 644/706 atomic regions from SNP 192988 to 193588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,176 DEBUG Processing 89/518 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,244 DEBUG Processing 467/589 atomic regions from SNP 139992 to 140592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:46,270 DEBUG Processing 624/639 atomic regions from SNP 187098 to 187698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:46,308 DEBUG Processing 625/669 atomic regions from SNP 187256 to 187856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,357 DEBUG Processing 483/544 atomic regions from SNP 144778 to 145378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:46,384 DEBUG Processing 645/706 atomic regions from SNP 193288 to 193888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,390 DEBUG Processing 90/518 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,466 DEBUG Processing 468/589 atomic regions from SNP 140292 to 140892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:46,500 DEBUG Processing 625/639 atomic regions from SNP 187398 to 187998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:46,542 DEBUG Processing 626/669 atomic regions from SNP 187556 to 188156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,575 DEBUG Processing 484/544 atomic regions from SNP 145078 to 145678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:46,607 DEBUG Processing 91/518 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,626 DEBUG Processing 646/706 atomic regions from SNP 193588 to 194188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,693 DEBUG Processing 469/589 atomic regions from SNP 140592 to 141192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:46,727 DEBUG Processing 626/639 atomic regions from SNP 187698 to 188298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:46,783 DEBUG Processing 627/669 atomic regions from SNP 187856 to 188456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,792 DEBUG Processing 485/544 atomic regions from SNP 145378 to 145978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:46,820 DEBUG Processing 92/518 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,866 DEBUG Processing 647/706 atomic regions from SNP 193888 to 194488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,924 DEBUG Processing 470/589 atomic regions from SNP 140892 to 141492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:46,956 DEBUG Processing 627/639 atomic regions from SNP 187998 to 188598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:47,008 DEBUG Processing 486/544 atomic regions from SNP 145678 to 146278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:47,019 DEBUG Processing 628/669 atomic regions from SNP 188156 to 188756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,033 DEBUG Processing 93/518 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,105 DEBUG Processing 648/706 atomic regions from SNP 194188 to 194788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,154 DEBUG Processing 471/589 atomic regions from SNP 141192 to 141792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:47,187 DEBUG Processing 628/639 atomic regions from SNP 188298 to 188898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:47,226 DEBUG Processing 487/544 atomic regions from SNP 145978 to 146578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:47,250 DEBUG Processing 94/518 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,270 DEBUG Processing 629/669 atomic regions from SNP 188456 to 189056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,344 DEBUG Processing 649/706 atomic regions from SNP 194488 to 195088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,376 DEBUG Processing 472/589 atomic regions from SNP 141492 to 142092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:47,416 DEBUG Processing 629/639 atomic regions from SNP 188598 to 189198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:47,444 DEBUG Processing 488/544 atomic regions from SNP 146278 to 146878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:47,465 DEBUG Processing 95/518 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,519 DEBUG Processing 630/669 atomic regions from SNP 188756 to 189356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,581 DEBUG Processing 650/706 atomic regions from SNP 194788 to 195388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,605 DEBUG Processing 473/589 atomic regions from SNP 141792 to 142392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:47,646 DEBUG Processing 630/639 atomic regions from SNP 188898 to 189498 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:47,656 DEBUG Processing 489/544 atomic regions from SNP 146578 to 147178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:47,673 DEBUG Processing 96/518 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,754 DEBUG Processing 631/669 atomic regions from SNP 189056 to 189656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,818 DEBUG Processing 651/706 atomic regions from SNP 195088 to 195688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,841 DEBUG Processing 474/589 atomic regions from SNP 142092 to 142692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:47,872 DEBUG Processing 490/544 atomic regions from SNP 146878 to 147478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:47,886 DEBUG Processing 97/518 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,898 DEBUG Processing 631/639 atomic regions from SNP 189198 to 189798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:47,998 DEBUG Processing 632/669 atomic regions from SNP 189356 to 189956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,053 DEBUG Processing 652/706 atomic regions from SNP 195388 to 195988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,082 DEBUG Processing 475/589 atomic regions from SNP 142392 to 142992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:48,087 DEBUG Processing 491/544 atomic regions from SNP 147178 to 147778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:48,102 DEBUG Processing 98/518 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,146 DEBUG Processing 632/639 atomic regions from SNP 189498 to 190098 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:48,234 DEBUG Processing 633/669 atomic regions from SNP 189656 to 190256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,282 DEBUG Processing 653/706 atomic regions from SNP 195688 to 196288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,296 DEBUG Processing 492/544 atomic regions from SNP 147478 to 148078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:48,298 DEBUG Processing 476/589 atomic regions from SNP 142692 to 143292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:48,313 DEBUG Processing 99/518 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,368 DEBUG Processing 633/639 atomic regions from SNP 189798 to 190398 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:48,467 DEBUG Processing 634/669 atomic regions from SNP 189956 to 190556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,510 DEBUG Processing 493/544 atomic regions from SNP 147778 to 148378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:48,515 DEBUG Processing 654/706 atomic regions from SNP 195988 to 196588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,516 DEBUG Processing 477/589 atomic regions from SNP 142992 to 143592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:48,522 DEBUG Processing 100/518 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,592 DEBUG Processing 634/639 atomic regions from SNP 190098 to 190698 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:48,704 DEBUG Processing 635/669 atomic regions from SNP 190256 to 190856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,727 DEBUG Processing 494/544 atomic regions from SNP 148078 to 148678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:48,737 DEBUG Processing 101/518 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,743 DEBUG Processing 478/589 atomic regions from SNP 143292 to 143892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:48,756 DEBUG Processing 655/706 atomic regions from SNP 196288 to 196888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,824 DEBUG Processing 635/639 atomic regions from SNP 190398 to 190998 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:48,947 DEBUG Processing 102/518 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,948 DEBUG Processing 495/544 atomic regions from SNP 148378 to 148978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:48,950 DEBUG Processing 636/669 atomic regions from SNP 190556 to 191156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,986 DEBUG Processing 479/589 atomic regions from SNP 143592 to 144192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:48,994 DEBUG Processing 656/706 atomic regions from SNP 196588 to 197188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,055 DEBUG Processing 636/639 atomic regions from SNP 190698 to 191298 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:49,156 DEBUG Processing 103/518 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,182 DEBUG Processing 496/544 atomic regions from SNP 148678 to 149278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:49,194 DEBUG Processing 637/669 atomic regions from SNP 190856 to 191456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,232 DEBUG Processing 480/589 atomic regions from SNP 143892 to 144492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:49,234 DEBUG Processing 657/706 atomic regions from SNP 196888 to 197488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,290 DEBUG Processing 637/639 atomic regions from SNP 190998 to 191598 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:49,372 DEBUG Processing 104/518 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,423 DEBUG Processing 497/544 atomic regions from SNP 148978 to 149578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:49,436 DEBUG Processing 638/669 atomic regions from SNP 191156 to 191756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,473 DEBUG Processing 658/706 atomic regions from SNP 197188 to 197788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,474 DEBUG Processing 481/589 atomic regions from SNP 144192 to 144792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:49,515 DEBUG Processing 638/639 atomic regions from SNP 191298 to 191898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:49,576 DEBUG Processing 105/518 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,623 DEBUG Processing 498/544 atomic regions from SNP 149278 to 149878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:49,676 DEBUG Processing 639/669 atomic regions from SNP 191456 to 192056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,697 DEBUG Processing 482/589 atomic regions from SNP 144492 to 145092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:49,709 DEBUG Processing 659/706 atomic regions from SNP 197488 to 198088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,749 DEBUG Processing 639/639 atomic regions from SNP 191598 to 192198 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:49,802 DEBUG Processing 106/518 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,832 DEBUG Processing 499/544 atomic regions from SNP 149578 to 150178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:49,892 DEBUG Unique SNPs positions in subchromosome 1: 192199 2025-01-31 09:52:49,911 DEBUG Processing 640/669 atomic regions from SNP 191756 to 192356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,921 DEBUG Processing 483/589 atomic regions from SNP 144792 to 145392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:49,938 DEBUG Processing 660/706 atomic regions from SNP 197788 to 198388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,042 DEBUG Processing 107/518 atomic regions from SNP 31906 to 32507 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,070 DEBUG Processing 500/544 atomic regions from SNP 149878 to 150478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:50,138 DEBUG Processing 484/589 atomic regions from SNP 145092 to 145692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:50,142 DEBUG Processing 641/669 atomic regions from SNP 192056 to 192656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,161 DEBUG Processing 661/706 atomic regions from SNP 198088 to 198688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,264 DEBUG Processing 108/518 atomic regions from SNP 32207 to 32808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,296 DEBUG Processing 501/544 atomic regions from SNP 150178 to 150778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:50,350 DEBUG Processing 485/589 atomic regions from SNP 145392 to 145992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:50,373 DEBUG Processing 642/669 atomic regions from SNP 192356 to 192956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,386 DEBUG Processing 662/706 atomic regions from SNP 198388 to 198988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,476 DEBUG Processing 109/518 atomic regions from SNP 32508 to 33109 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,529 DEBUG Processing 502/544 atomic regions from SNP 150478 to 151078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:50,566 DEBUG Processing 486/589 atomic regions from SNP 145692 to 146292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:50,603 DEBUG Processing 643/669 atomic regions from SNP 192656 to 193256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,620 DEBUG Processing 663/706 atomic regions from SNP 198688 to 199288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,723 DEBUG Processing 110/518 atomic regions from SNP 32809 to 33410 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,746 DEBUG Processing 503/544 atomic regions from SNP 150778 to 151378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:50,783 DEBUG Processing 487/589 atomic regions from SNP 145992 to 146592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:50,834 DEBUG Processing 644/669 atomic regions from SNP 192956 to 193556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,855 DEBUG Processing 664/706 atomic regions from SNP 198988 to 199588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,959 DEBUG Processing 111/518 atomic regions from SNP 33110 to 33711 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,995 DEBUG Processing 504/544 atomic regions from SNP 151078 to 151678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:51,008 DEBUG Processing 488/589 atomic regions from SNP 146292 to 146892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:51,074 DEBUG Processing 645/669 atomic regions from SNP 193256 to 193856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,101 DEBUG Processing 665/706 atomic regions from SNP 199288 to 199888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,168 DEBUG Subchromosome time: 172.93309612944722, subchromosome SNPs: 192199 2025-01-31 09:52:51,168 DEBUG Estimated BADs: [1.89, 0.47, 0.95, 0.47, 0.95, 0.47, 1.89, 2.84, 0.95, 0.19, 0.95, 1.89, 9.47, 0.95, 3.79, 0.95] SNP counts: [4347, 20275, 19711, 30856, 12423, 15765, 25326, 7685, 8493, 5990, 6135, 8674, 108, 9903, 5204, 11304] SNP IDs counts: [4347, 20275, 19711, 30856, 12423, 15765, 25326, 7685, 8493, 5990, 6135, 8674, 108, 9903, 5204, 11304] Critical gap: 613042bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.45Mbp, 17.48Mbp, 32.82Mbp, 51.82Mbp, 59.03Mbp, 69.15Mbp, 83.10Mbp, 87.15Mbp, 92.49Mbp, 96.57Mbp, 100.10Mbp, 105.00Mbp, 105.05Mbp, 110.37Mbp, 113.11Mbp, 120.13Mbp] 2025-01-31 09:52:51,168 DEBUG chr12 time: 172.93356270715594 s 2025-01-31 09:52:51,212 DEBUG Processing 112/518 atomic regions from SNP 33411 to 34012 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,233 DEBUG Processing 489/589 atomic regions from SNP 146592 to 147192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:51,252 DEBUG Processing 505/544 atomic regions from SNP 151378 to 151978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:51,293 DEBUG chr12: Fitting background model for 16 segments 2025-01-31 09:52:51,302 DEBUG Processing 646/669 atomic regions from SNP 193556 to 194156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,358 DEBUG Processing 666/706 atomic regions from SNP 199588 to 200188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,450 DEBUG Processing 490/589 atomic regions from SNP 146892 to 147492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:51,452 DEBUG Processing 113/518 atomic regions from SNP 33712 to 34313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,489 DEBUG Processing 506/544 atomic regions from SNP 151678 to 152278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:51,532 DEBUG Processing 647/669 atomic regions from SNP 193856 to 194456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,617 DEBUG Processing 667/706 atomic regions from SNP 199888 to 200488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,662 DEBUG Processing 491/589 atomic regions from SNP 147192 to 147792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:51,674 DEBUG Processing 114/518 atomic regions from SNP 34013 to 34614 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,725 DEBUG Processing 507/544 atomic regions from SNP 151978 to 152578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:51,760 DEBUG Processing 648/669 atomic regions from SNP 194156 to 194756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,865 DEBUG Processing 668/706 atomic regions from SNP 200188 to 200788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,874 DEBUG Processing 492/589 atomic regions from SNP 147492 to 148092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:51,902 DEBUG Processing 115/518 atomic regions from SNP 34314 to 34915 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,954 DEBUG Processing 508/544 atomic regions from SNP 152278 to 152878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:51,991 DEBUG Processing 649/669 atomic regions from SNP 194456 to 195056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,084 DEBUG Processing 493/589 atomic regions from SNP 147792 to 148392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:52,115 DEBUG Processing 116/518 atomic regions from SNP 34615 to 35216 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,120 DEBUG Processing 669/706 atomic regions from SNP 200488 to 201088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,168 DEBUG Processing 509/544 atomic regions from SNP 152578 to 153178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:52,219 DEBUG Processing 650/669 atomic regions from SNP 194756 to 195356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,292 DEBUG Processing 494/589 atomic regions from SNP 148092 to 148692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:52,333 DEBUG Processing 117/518 atomic regions from SNP 34916 to 35517 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,382 DEBUG Processing 670/706 atomic regions from SNP 200788 to 201388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,400 DEBUG Processing 510/544 atomic regions from SNP 152878 to 153478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:52,449 DEBUG Processing 651/669 atomic regions from SNP 195056 to 195656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,510 DEBUG Processing 495/589 atomic regions from SNP 148392 to 148992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:52,543 DEBUG Processing 118/518 atomic regions from SNP 35217 to 35818 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,634 DEBUG Processing 511/544 atomic regions from SNP 153178 to 153778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:52,648 DEBUG Processing 671/706 atomic regions from SNP 201088 to 201688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,680 DEBUG Processing 652/669 atomic regions from SNP 195356 to 195956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,730 DEBUG Processing 496/589 atomic regions from SNP 148692 to 149292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:52,759 DEBUG Processing 119/518 atomic regions from SNP 35518 to 36119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,867 DEBUG Processing 512/544 atomic regions from SNP 153478 to 154078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:52,901 DEBUG Processing 672/706 atomic regions from SNP 201388 to 201988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,915 DEBUG Processing 653/669 atomic regions from SNP 195656 to 196256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,959 DEBUG Processing 497/589 atomic regions from SNP 148992 to 149592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:52,993 DEBUG Processing 120/518 atomic regions from SNP 35819 to 36420 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,104 DEBUG Processing 513/544 atomic regions from SNP 153778 to 154378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:53,152 DEBUG Processing 654/669 atomic regions from SNP 195956 to 196556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,153 DEBUG Processing 673/706 atomic regions from SNP 201688 to 202288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,191 DEBUG Processing 498/589 atomic regions from SNP 149292 to 149892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:53,240 DEBUG Processing 121/518 atomic regions from SNP 36120 to 36721 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,316 DEBUG Processing 514/544 atomic regions from SNP 154078 to 154678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:53,383 DEBUG Processing 655/669 atomic regions from SNP 196256 to 196856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,416 DEBUG Processing 674/706 atomic regions from SNP 201988 to 202588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,438 DEBUG Processing 499/589 atomic regions from SNP 149592 to 150192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:53,463 DEBUG Processing 122/518 atomic regions from SNP 36421 to 37022 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,520 DEBUG Processing 515/544 atomic regions from SNP 154378 to 154978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:53,609 DEBUG Processing 656/669 atomic regions from SNP 196556 to 197156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,671 DEBUG Processing 500/589 atomic regions from SNP 149892 to 150492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:53,672 DEBUG Processing 675/706 atomic regions from SNP 202288 to 202888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,688 DEBUG Processing 123/518 atomic regions from SNP 36722 to 37323 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,733 DEBUG Processing 516/544 atomic regions from SNP 154678 to 155278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:53,834 DEBUG Processing 657/669 atomic regions from SNP 196856 to 197456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,904 DEBUG Processing 124/518 atomic regions from SNP 37023 to 37624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,918 DEBUG Processing 501/589 atomic regions from SNP 150192 to 150792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:53,931 DEBUG Processing 676/706 atomic regions from SNP 202588 to 203188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,951 DEBUG Processing 517/544 atomic regions from SNP 154978 to 155578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:54,061 DEBUG Processing 658/669 atomic regions from SNP 197156 to 197756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,120 DEBUG Processing 125/518 atomic regions from SNP 37324 to 37925 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,161 DEBUG Processing 502/589 atomic regions from SNP 150492 to 151092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:54,184 DEBUG Processing 518/544 atomic regions from SNP 155278 to 155878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:54,186 DEBUG Processing 677/706 atomic regions from SNP 202888 to 203488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,284 DEBUG Processing 659/669 atomic regions from SNP 197456 to 198056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,347 DEBUG Processing 126/518 atomic regions from SNP 37625 to 38226 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,386 DEBUG Processing 503/589 atomic regions from SNP 150792 to 151392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:54,432 DEBUG Processing 519/544 atomic regions from SNP 155578 to 156178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:54,432 DEBUG Processing 678/706 atomic regions from SNP 203188 to 203788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,516 DEBUG Processing 660/669 atomic regions from SNP 197756 to 198356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,577 DEBUG Processing 127/518 atomic regions from SNP 37926 to 38527 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,597 DEBUG Processing 504/589 atomic regions from SNP 151092 to 151692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:54,666 DEBUG Processing 520/544 atomic regions from SNP 155878 to 156478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:54,690 DEBUG Processing 679/706 atomic regions from SNP 203488 to 204088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,750 DEBUG Processing 661/669 atomic regions from SNP 198056 to 198656 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,808 DEBUG Processing 505/589 atomic regions from SNP 151392 to 151992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:54,818 DEBUG Processing 128/518 atomic regions from SNP 38227 to 38828 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,882 DEBUG Processing 521/544 atomic regions from SNP 156178 to 156778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:54,934 DEBUG Processing 680/706 atomic regions from SNP 203788 to 204388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,988 DEBUG Processing 662/669 atomic regions from SNP 198356 to 198956 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,019 DEBUG Processing 506/589 atomic regions from SNP 151692 to 152292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:55,050 DEBUG Processing 129/518 atomic regions from SNP 38528 to 39129 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,112 DEBUG Processing 522/544 atomic regions from SNP 156478 to 157078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:55,174 DEBUG Processing 681/706 atomic regions from SNP 204088 to 204688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,229 DEBUG Processing 663/669 atomic regions from SNP 198656 to 199256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,240 DEBUG Processing 507/589 atomic regions from SNP 151992 to 152592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:55,264 DEBUG Processing 130/518 atomic regions from SNP 38829 to 39430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,341 DEBUG Processing 523/544 atomic regions from SNP 156778 to 157378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:55,432 DEBUG Processing 682/706 atomic regions from SNP 204388 to 204988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,458 DEBUG Processing 508/589 atomic regions from SNP 152292 to 152892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:55,460 DEBUG Processing 664/669 atomic regions from SNP 198956 to 199556 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,488 DEBUG Processing 131/518 atomic regions from SNP 39130 to 39731 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,572 DEBUG Processing 524/544 atomic regions from SNP 157078 to 157678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:55,670 DEBUG Processing 683/706 atomic regions from SNP 204688 to 205288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,672 DEBUG Processing 509/589 atomic regions from SNP 152592 to 153192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:55,695 DEBUG Processing 665/669 atomic regions from SNP 199256 to 199856 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,727 DEBUG Processing 132/518 atomic regions from SNP 39431 to 40032 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,788 DEBUG Processing 525/544 atomic regions from SNP 157378 to 157978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:55,887 DEBUG Processing 510/589 atomic regions from SNP 152892 to 153492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:55,908 DEBUG Processing 684/706 atomic regions from SNP 204988 to 205588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,922 DEBUG Processing 666/669 atomic regions from SNP 199556 to 200156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,954 DEBUG Processing 133/518 atomic regions from SNP 39732 to 40333 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,997 DEBUG Processing 526/544 atomic regions from SNP 157678 to 158278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:56,100 DEBUG Processing 511/589 atomic regions from SNP 153192 to 153792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:56,150 DEBUG Processing 667/669 atomic regions from SNP 199856 to 200456 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,155 DEBUG Processing 685/706 atomic regions from SNP 205288 to 205888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,176 DEBUG Processing 134/518 atomic regions from SNP 40033 to 40634 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,211 DEBUG Processing 527/544 atomic regions from SNP 157978 to 158578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:56,314 DEBUG Processing 512/589 atomic regions from SNP 153492 to 154092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:56,379 DEBUG Processing 668/669 atomic regions from SNP 200156 to 200756 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,403 DEBUG Processing 135/518 atomic regions from SNP 40334 to 40935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,412 DEBUG Processing 686/706 atomic regions from SNP 205588 to 206188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,426 DEBUG Processing 528/544 atomic regions from SNP 158278 to 158878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:56,522 DEBUG Processing 513/589 atomic regions from SNP 153792 to 154392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:56,621 DEBUG Processing 669/669 atomic regions from SNP 200456 to 201056 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,644 DEBUG Processing 136/518 atomic regions from SNP 40635 to 41236 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,646 DEBUG Processing 529/544 atomic regions from SNP 158578 to 159178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:56,659 DEBUG Processing 687/706 atomic regions from SNP 205888 to 206488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,736 DEBUG Processing 514/589 atomic regions from SNP 154092 to 154692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:56,774 DEBUG Unique SNPs positions in subchromosome 1: 201057 2025-01-31 09:52:56,868 DEBUG Processing 530/544 atomic regions from SNP 158878 to 159478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:56,877 DEBUG Processing 137/518 atomic regions from SNP 40936 to 41537 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,904 DEBUG Processing 688/706 atomic regions from SNP 206188 to 206788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,949 DEBUG Processing 515/589 atomic regions from SNP 154392 to 154992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:57,082 DEBUG Processing 531/544 atomic regions from SNP 159178 to 159778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:57,095 DEBUG Processing 138/518 atomic regions from SNP 41237 to 41838 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,147 DEBUG Processing 689/706 atomic regions from SNP 206488 to 207088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,161 DEBUG Processing 516/589 atomic regions from SNP 154692 to 155292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:57,293 DEBUG Processing 532/544 atomic regions from SNP 159478 to 160078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:57,315 DEBUG Processing 139/518 atomic regions from SNP 41538 to 42139 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,379 DEBUG Processing 517/589 atomic regions from SNP 154992 to 155592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:57,391 DEBUG Processing 690/706 atomic regions from SNP 206788 to 207388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,502 DEBUG Processing 533/544 atomic regions from SNP 159778 to 160378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:57,536 DEBUG Processing 140/518 atomic regions from SNP 41839 to 42440 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,600 DEBUG Processing 518/589 atomic regions from SNP 155292 to 155892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:57,632 DEBUG Processing 691/706 atomic regions from SNP 207088 to 207688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,724 DEBUG Processing 534/544 atomic regions from SNP 160078 to 160678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:57,755 DEBUG Processing 141/518 atomic regions from SNP 42140 to 42741 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,823 DEBUG Processing 519/589 atomic regions from SNP 155592 to 156192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:57,873 DEBUG Processing 692/706 atomic regions from SNP 207388 to 207988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,930 DEBUG Processing 535/544 atomic regions from SNP 160378 to 160978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:57,957 DEBUG Processing 142/518 atomic regions from SNP 42441 to 43042 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,040 DEBUG Processing 520/589 atomic regions from SNP 155892 to 156492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:58,110 DEBUG Processing 693/706 atomic regions from SNP 207688 to 208288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,144 DEBUG Processing 536/544 atomic regions from SNP 160678 to 161278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:58,189 DEBUG Processing 143/518 atomic regions from SNP 42742 to 43343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,257 DEBUG Processing 521/589 atomic regions from SNP 156192 to 156792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:58,348 DEBUG Processing 694/706 atomic regions from SNP 207988 to 208588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,360 DEBUG Processing 537/544 atomic regions from SNP 160978 to 161578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:58,419 DEBUG Processing 144/518 atomic regions from SNP 43043 to 43644 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,469 DEBUG Processing 522/589 atomic regions from SNP 156492 to 157092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:58,573 DEBUG Processing 538/544 atomic regions from SNP 161278 to 161878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:58,579 DEBUG Processing 695/706 atomic regions from SNP 208288 to 208888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,636 DEBUG Processing 145/518 atomic regions from SNP 43344 to 43945 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,679 DEBUG Processing 523/589 atomic regions from SNP 156792 to 157392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:58,782 DEBUG Processing 539/544 atomic regions from SNP 161578 to 162178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:58,825 DEBUG Processing 696/706 atomic regions from SNP 208588 to 209188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,852 DEBUG Processing 146/518 atomic regions from SNP 43645 to 44246 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,896 DEBUG Processing 524/589 atomic regions from SNP 157092 to 157692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:58,902 DEBUG Subchromosome time: 184.36840134859085, subchromosome SNPs: 201057 2025-01-31 09:52:58,902 DEBUG Estimated BADs: [0.51, 1.02, 5.11, 0.51, 10.22, 1.02, 4.09, 1.02, 2.04, 1.02, 3.07, 1.02, 10.22, 0.34, 1.02, 0.20, 1.02, 2.04, 1.02, 0.51, 2.04] SNP counts: [9542, 20753, 1557, 1949, 683, 54916, 1959, 4877, 2939, 20030, 1303, 7190, 101, 4343, 8382, 4842, 14611, 6973, 27276, 6053, 778] SNP IDs counts: [9542, 20753, 1557, 1949, 683, 54916, 1959, 4877, 2939, 20030, 1303, 7190, 101, 4343, 8382, 4842, 14611, 6973, 27276, 6053, 778] Critical gap: 600895bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.78Mbp, 21.16Mbp, 22.06Mbp, 23.39Mbp, 23.77Mbp, 54.50Mbp, 55.53Mbp, 58.11Mbp, 59.66Mbp, 73.25Mbp, 73.94Mbp, 78.16Mbp, 78.21Mbp, 80.88Mbp, 85.69Mbp, 88.84Mbp, 96.93Mbp, 100.74Mbp, 115.90Mbp, 119.43Mbp, 120.42Mbp] 2025-01-31 09:52:58,902 DEBUG chr13 time: 184.36893594264984 s 2025-01-31 09:52:58,998 DEBUG Processing 540/544 atomic regions from SNP 161878 to 162478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:59,072 DEBUG chr13: Fitting background model for 21 segments 2025-01-31 09:52:59,090 DEBUG Processing 697/706 atomic regions from SNP 208888 to 209488 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,093 DEBUG Processing 147/518 atomic regions from SNP 43946 to 44547 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:59,157 DEBUG Processing 525/589 atomic regions from SNP 157392 to 157992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:59,213 DEBUG Processing 541/544 atomic regions from SNP 162178 to 162778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:59,326 DEBUG Processing 148/518 atomic regions from SNP 44247 to 44848 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:59,379 DEBUG Processing 698/706 atomic regions from SNP 209188 to 209788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,424 DEBUG Processing 526/589 atomic regions from SNP 157692 to 158292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:59,444 DEBUG Processing 542/544 atomic regions from SNP 162478 to 163078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:59,526 DEBUG Processing 149/518 atomic regions from SNP 44548 to 45149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:59,643 DEBUG Processing 699/706 atomic regions from SNP 209488 to 210088 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,648 DEBUG Processing 527/589 atomic regions from SNP 157992 to 158592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:59,670 DEBUG Processing 543/544 atomic regions from SNP 162778 to 163378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:59,731 DEBUG Processing 150/518 atomic regions from SNP 44849 to 45450 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:59,872 DEBUG Processing 528/589 atomic regions from SNP 158292 to 158892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:59,892 DEBUG Processing 544/544 atomic regions from SNP 163078 to 163678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:59,916 DEBUG Processing 700/706 atomic regions from SNP 209788 to 210388 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,944 DEBUG Processing 151/518 atomic regions from SNP 45150 to 45751 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,048 DEBUG Unique SNPs positions in subchromosome 1: 163679 2025-01-31 09:53:00,089 DEBUG Processing 529/589 atomic regions from SNP 158592 to 159192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:00,158 DEBUG Processing 152/518 atomic regions from SNP 45451 to 46052 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,184 DEBUG Processing 701/706 atomic regions from SNP 210088 to 210688 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,307 DEBUG Processing 530/589 atomic regions from SNP 158892 to 159492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:00,370 DEBUG Processing 153/518 atomic regions from SNP 45752 to 46353 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,440 DEBUG Processing 702/706 atomic regions from SNP 210388 to 210988 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,523 DEBUG Processing 531/589 atomic regions from SNP 159192 to 159792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:00,581 DEBUG Processing 154/518 atomic regions from SNP 46053 to 46654 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,682 DEBUG Processing 703/706 atomic regions from SNP 210688 to 211288 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,734 DEBUG Processing 532/589 atomic regions from SNP 159492 to 160092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:00,788 DEBUG Processing 155/518 atomic regions from SNP 46354 to 46955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,933 DEBUG Processing 704/706 atomic regions from SNP 210988 to 211588 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,948 DEBUG Processing 533/589 atomic regions from SNP 159792 to 160392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:00,991 DEBUG Processing 156/518 atomic regions from SNP 46655 to 47256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,166 DEBUG Processing 534/589 atomic regions from SNP 160092 to 160692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:01,173 DEBUG Processing 705/706 atomic regions from SNP 211288 to 211888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,198 DEBUG Processing 157/518 atomic regions from SNP 46956 to 47557 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,383 DEBUG Processing 535/589 atomic regions from SNP 160392 to 160992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:01,411 DEBUG Processing 158/518 atomic regions from SNP 47257 to 47858 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,414 DEBUG Processing 706/706 atomic regions from SNP 211588 to 212188 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,567 DEBUG Unique SNPs positions in subchromosome 1: 212189 2025-01-31 09:53:01,604 DEBUG Processing 536/589 atomic regions from SNP 160692 to 161292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:01,626 DEBUG Processing 159/518 atomic regions from SNP 47558 to 48159 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,832 DEBUG Processing 537/589 atomic regions from SNP 160992 to 161592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:01,836 DEBUG Processing 160/518 atomic regions from SNP 47859 to 48460 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,914 DEBUG Subchromosome time: 139.0534558556974, subchromosome SNPs: 163679 2025-01-31 09:53:01,914 DEBUG Estimated BADs: [3.23, 0.36, 2.15, 0.36, 1.08, 2.15, 0.54, 1.08, 0.54, 1.08, 4.31, 2.15] SNP counts: [3998, 4207, 27712, 8128, 7550, 12285, 27611, 7487, 44906, 4318, 8779, 6698] SNP IDs counts: [3998, 4207, 27712, 8128, 7550, 12285, 27611, 7487, 44906, 4318, 8779, 6698] Critical gap: 539230bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.09Mbp], 5.61Mbp, 7.91Mbp, 23.55Mbp, 28.26Mbp, 32.41Mbp, 39.06Mbp, 55.81Mbp, 60.30Mbp, 87.43Mbp, 89.85Mbp, 94.49Mbp, 98.21Mbp] 2025-01-31 09:53:01,914 DEBUG chr16 time: 139.0539641045034 s 2025-01-31 09:53:02,026 DEBUG chr16: Fitting background model for 12 segments 2025-01-31 09:53:02,035 DEBUG Processing 161/518 atomic regions from SNP 48160 to 48761 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,041 DEBUG Processing 538/589 atomic regions from SNP 161292 to 161892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:02,236 DEBUG Processing 162/518 atomic regions from SNP 48461 to 49062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,251 DEBUG Processing 539/589 atomic regions from SNP 161592 to 162192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:02,439 DEBUG Processing 163/518 atomic regions from SNP 48762 to 49363 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,458 DEBUG Processing 540/589 atomic regions from SNP 161892 to 162492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:02,641 DEBUG Processing 164/518 atomic regions from SNP 49063 to 49664 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,667 DEBUG Processing 541/589 atomic regions from SNP 162192 to 162792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:02,844 DEBUG Processing 165/518 atomic regions from SNP 49364 to 49965 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,878 DEBUG Processing 542/589 atomic regions from SNP 162492 to 163092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:03,049 DEBUG Processing 166/518 atomic regions from SNP 49665 to 50266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,089 DEBUG Processing 543/589 atomic regions from SNP 162792 to 163392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:03,249 DEBUG Processing 167/518 atomic regions from SNP 49966 to 50567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,314 DEBUG Processing 544/589 atomic regions from SNP 163092 to 163692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:03,448 DEBUG Processing 168/518 atomic regions from SNP 50267 to 50868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,533 DEBUG Processing 545/589 atomic regions from SNP 163392 to 163992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:03,665 DEBUG Processing 169/518 atomic regions from SNP 50568 to 51169 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,719 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:53:03,773 DEBUG Processing 546/589 atomic regions from SNP 163692 to 164292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:03,902 DEBUG Processing 170/518 atomic regions from SNP 50869 to 51470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,021 DEBUG Processing 547/589 atomic regions from SNP 163992 to 164592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:04,144 DEBUG Processing 171/518 atomic regions from SNP 51170 to 51771 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,234 DEBUG Processing 548/589 atomic regions from SNP 164292 to 164892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:04,372 DEBUG Processing 172/518 atomic regions from SNP 51471 to 52072 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,448 DEBUG Processing 549/589 atomic regions from SNP 164592 to 165192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:04,574 DEBUG Processing 173/518 atomic regions from SNP 51772 to 52373 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,663 DEBUG Processing 550/589 atomic regions from SNP 164892 to 165492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:04,800 DEBUG Processing 174/518 atomic regions from SNP 52073 to 52674 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,878 DEBUG Processing 551/589 atomic regions from SNP 165192 to 165792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:05,025 DEBUG Processing 175/518 atomic regions from SNP 52374 to 52975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,093 DEBUG Processing 552/589 atomic regions from SNP 165492 to 166092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:05,253 DEBUG Processing 176/518 atomic regions from SNP 52675 to 53276 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,306 DEBUG Processing 553/589 atomic regions from SNP 165792 to 166392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:05,481 DEBUG Processing 177/518 atomic regions from SNP 52976 to 53577 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,514 DEBUG Processing 554/589 atomic regions from SNP 166092 to 166692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:05,716 DEBUG Processing 178/518 atomic regions from SNP 53277 to 53878 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,739 DEBUG Processing 555/589 atomic regions from SNP 166392 to 166992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:05,942 DEBUG Processing 179/518 atomic regions from SNP 53578 to 54179 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,960 DEBUG Processing 556/589 atomic regions from SNP 166692 to 167292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:06,146 DEBUG Processing 180/518 atomic regions from SNP 53879 to 54480 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,180 DEBUG Processing 557/589 atomic regions from SNP 166992 to 167592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:06,361 DEBUG Processing 181/518 atomic regions from SNP 54180 to 54781 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,429 DEBUG Processing 558/589 atomic regions from SNP 167292 to 167892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:06,604 DEBUG Processing 182/518 atomic regions from SNP 54481 to 55082 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,682 DEBUG Processing 559/589 atomic regions from SNP 167592 to 168192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:06,819 DEBUG Processing 183/518 atomic regions from SNP 54782 to 55383 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,942 DEBUG Processing 560/589 atomic regions from SNP 167892 to 168492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:07,024 DEBUG Processing 184/518 atomic regions from SNP 55083 to 55684 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,196 DEBUG Processing 561/589 atomic regions from SNP 168192 to 168792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:07,226 DEBUG Processing 185/518 atomic regions from SNP 55384 to 55985 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,432 DEBUG Processing 186/518 atomic regions from SNP 55685 to 56286 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,437 DEBUG Processing 562/589 atomic regions from SNP 168492 to 169092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:07,633 DEBUG Processing 187/518 atomic regions from SNP 55986 to 56587 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,677 DEBUG Processing 563/589 atomic regions from SNP 168792 to 169392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:07,834 DEBUG Processing 188/518 atomic regions from SNP 56287 to 56888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,910 DEBUG Processing 564/589 atomic regions from SNP 169092 to 169692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:08,039 DEBUG Processing 189/518 atomic regions from SNP 56588 to 57189 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,158 DEBUG Processing 565/589 atomic regions from SNP 169392 to 169992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:08,247 DEBUG Processing 190/518 atomic regions from SNP 56889 to 57490 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,395 DEBUG Processing 566/589 atomic regions from SNP 169692 to 170292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:08,461 DEBUG Processing 191/518 atomic regions from SNP 57190 to 57791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,626 DEBUG Processing 567/589 atomic regions from SNP 169992 to 170592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:08,673 DEBUG Processing 192/518 atomic regions from SNP 57491 to 58092 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,860 DEBUG Processing 568/589 atomic regions from SNP 170292 to 170892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:08,888 DEBUG Processing 193/518 atomic regions from SNP 57792 to 58393 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,096 DEBUG Processing 194/518 atomic regions from SNP 58093 to 58694 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,097 DEBUG Processing 569/589 atomic regions from SNP 170592 to 171192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:09,305 DEBUG Processing 195/518 atomic regions from SNP 58394 to 58995 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,349 DEBUG Processing 570/589 atomic regions from SNP 170892 to 171492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:09,512 DEBUG Processing 196/518 atomic regions from SNP 58695 to 59296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,599 DEBUG Processing 571/589 atomic regions from SNP 171192 to 171792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:09,722 DEBUG Processing 197/518 atomic regions from SNP 58996 to 59597 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,831 DEBUG Processing 572/589 atomic regions from SNP 171492 to 172092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:09,935 DEBUG Processing 198/518 atomic regions from SNP 59297 to 59898 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,055 DEBUG Processing 573/589 atomic regions from SNP 171792 to 172392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:10,156 DEBUG Processing 199/518 atomic regions from SNP 59598 to 60199 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,288 DEBUG Processing 574/589 atomic regions from SNP 172092 to 172692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:10,376 DEBUG Processing 200/518 atomic regions from SNP 59899 to 60500 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,529 DEBUG Processing 575/589 atomic regions from SNP 172392 to 172992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:10,592 DEBUG Processing 201/518 atomic regions from SNP 60200 to 60801 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,751 DEBUG Processing 576/589 atomic regions from SNP 172692 to 173292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:10,800 DEBUG Processing 202/518 atomic regions from SNP 60501 to 61102 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,969 DEBUG Processing 577/589 atomic regions from SNP 172992 to 173592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:11,007 DEBUG Processing 203/518 atomic regions from SNP 60802 to 61403 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,192 DEBUG Processing 578/589 atomic regions from SNP 173292 to 173892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:11,218 DEBUG Processing 204/518 atomic regions from SNP 61103 to 61704 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,413 DEBUG Processing 579/589 atomic regions from SNP 173592 to 174192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:11,428 DEBUG Processing 205/518 atomic regions from SNP 61404 to 62005 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,650 DEBUG Processing 206/518 atomic regions from SNP 61705 to 62306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,668 DEBUG Processing 580/589 atomic regions from SNP 173892 to 174492 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:11,749 DEBUG Subchromosome time: 208.38483417406678, subchromosome SNPs: 212189 2025-01-31 09:53:11,749 DEBUG Estimated BADs: [12.07, 2.41, 0.60, 0.24, 1.21, 0.24, 1.21, 0.40, 8.45, 1.21, 2.41, 1.21, 7.24, 2.41, 0.60, 12.07, 2.41, 1.21, 0.40, 2.41, 1.21, 0.60, 3.62] SNP counts: [148, 6573, 9928, 9018, 10517, 6898, 13803, 20766, 194, 16780, 4519, 15308, 2033, 6116, 2273, 124, 6101, 23868, 5312, 16885, 15912, 6327, 12786] SNP IDs counts: [148, 6573, 9928, 9018, 10517, 6898, 13803, 20766, 194, 16780, 4519, 15308, 2033, 6116, 2273, 124, 6101, 23868, 5312, 16885, 15912, 6327, 12786] Critical gap: 592766bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.74Mbp, 12.73Mbp, 18.52Mbp, 24.38Mbp, 28.69Mbp, 36.45Mbp, 48.77Mbp, 48.88Mbp, 58.17Mbp, 60.70Mbp, 68.96Mbp, 70.03Mbp, 73.40Mbp, 74.83Mbp, 74.90Mbp, 78.15Mbp, 91.06Mbp, 94.13Mbp, 103.10Mbp, 111.74Mbp, 115.18Mbp, 122.08Mbp] 2025-01-31 09:53:11,749 DEBUG chr11 time: 208.3856088630855 s 2025-01-31 09:53:11,871 DEBUG Processing 207/518 atomic regions from SNP 62006 to 62607 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,891 DEBUG chr11: Fitting background model for 23 segments 2025-01-31 09:53:11,935 DEBUG Processing 581/589 atomic regions from SNP 174192 to 174792 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:12,076 DEBUG Processing 208/518 atomic regions from SNP 62307 to 62908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,184 DEBUG Processing 582/589 atomic regions from SNP 174492 to 175092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:12,289 DEBUG Processing 209/518 atomic regions from SNP 62608 to 63209 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,427 DEBUG Processing 583/589 atomic regions from SNP 174792 to 175392 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:12,505 DEBUG Processing 210/518 atomic regions from SNP 62909 to 63510 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,531 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:53:12,533 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:53:12,650 DEBUG Processing 584/589 atomic regions from SNP 175092 to 175692 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:12,726 DEBUG Processing 211/518 atomic regions from SNP 63210 to 63811 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,862 DEBUG Processing 585/589 atomic regions from SNP 175392 to 175992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:12,948 DEBUG Processing 212/518 atomic regions from SNP 63511 to 64112 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,082 DEBUG Processing 586/589 atomic regions from SNP 175692 to 176292 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:13,164 DEBUG Processing 213/518 atomic regions from SNP 63812 to 64413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,325 DEBUG Processing 587/589 atomic regions from SNP 175992 to 176592 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:13,378 DEBUG Processing 214/518 atomic regions from SNP 64113 to 64714 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,573 DEBUG Processing 588/589 atomic regions from SNP 176292 to 176892 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:13,592 DEBUG Processing 215/518 atomic regions from SNP 64414 to 65015 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,791 DEBUG Processing 589/589 atomic regions from SNP 176592 to 177192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:13,819 DEBUG Processing 216/518 atomic regions from SNP 64715 to 65316 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,928 DEBUG Unique SNPs positions in subchromosome 1: 177193 2025-01-31 09:53:14,035 DEBUG Processing 217/518 atomic regions from SNP 65016 to 65617 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,247 DEBUG Processing 218/518 atomic regions from SNP 65317 to 65918 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,267 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:53:14,447 DEBUG chrY total SNP count: 74 2025-01-31 09:53:14,447 DEBUG chrY length: 91744698 2025-01-31 09:53:14,447 DEBUG ----------------------------------------- 2025-01-31 09:53:14,447 INFO Processing SNPs in chrY 2025-01-31 09:53:14,467 DEBUG Processing 219/518 atomic regions from SNP 65618 to 66219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,686 DEBUG Processing 220/518 atomic regions from SNP 65919 to 66520 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,902 DEBUG Processing 221/518 atomic regions from SNP 66220 to 66821 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,121 DEBUG Processing 222/518 atomic regions from SNP 66521 to 67122 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,334 DEBUG Processing 223/518 atomic regions from SNP 66822 to 67423 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,536 DEBUG Processing 224/518 atomic regions from SNP 67123 to 67724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,743 DEBUG Processing 225/518 atomic regions from SNP 67424 to 68025 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,956 DEBUG Processing 226/518 atomic regions from SNP 67725 to 68326 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,175 DEBUG Processing 227/518 atomic regions from SNP 68026 to 68627 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,310 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:53:16,388 DEBUG Processing 228/518 atomic regions from SNP 68327 to 68928 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,618 DEBUG Processing 229/518 atomic regions from SNP 68628 to 69229 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,829 DEBUG Processing 230/518 atomic regions from SNP 68929 to 69530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,041 DEBUG Processing 231/518 atomic regions from SNP 69230 to 69831 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,256 DEBUG Processing 232/518 atomic regions from SNP 69531 to 70132 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,509 DEBUG Processing 233/518 atomic regions from SNP 69832 to 70433 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,763 DEBUG Processing 234/518 atomic regions from SNP 70133 to 70734 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,994 DEBUG Processing 235/518 atomic regions from SNP 70434 to 71035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,215 DEBUG Processing 236/518 atomic regions from SNP 70735 to 71336 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,434 DEBUG Processing 237/518 atomic regions from SNP 71036 to 71637 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,494 DEBUG Subchromosome time: 156.85317663103342, subchromosome SNPs: 177193 2025-01-31 09:53:18,495 DEBUG Estimated BADs: [0.58, 1.15, 3.46, 1.15, 0.58, 1.15, 9.23, 1.15, 0.19, 0.58, 2.31, 0.58, 5.77, 1.15, 4.61, 2.31, 1.15, 3.46, 1.15, 3.46, 0.58] SNP counts: [3325, 5290, 1867, 5564, 37637, 6978, 233, 11417, 7499, 13649, 4604, 22119, 349, 4834, 12179, 6276, 5534, 1032, 16792, 9205, 810] SNP IDs counts: [3325, 5290, 1867, 5564, 37637, 6978, 233, 11417, 7499, 13649, 4604, 22119, 349, 4834, 12179, 6276, 5534, 1032, 16792, 9205, 810] Critical gap: 550371bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.10Mbp, 8.09Mbp, 9.14Mbp, 12.28Mbp, 34.37Mbp, 38.24Mbp, 38.36Mbp, 45.00Mbp, 49.80Mbp, 57.70Mbp, 60.18Mbp, 73.00Mbp, 73.19Mbp, 75.85Mbp, 82.38Mbp, 85.79Mbp, 88.73Mbp, 89.27Mbp, 98.50Mbp, 103.37Mbp, 104.04Mbp] 2025-01-31 09:53:18,495 DEBUG chr15 time: 156.85372794419527 s 2025-01-31 09:53:18,603 DEBUG chr15: Fitting background model for 21 segments 2025-01-31 09:53:18,647 DEBUG Processing 238/518 atomic regions from SNP 71337 to 71938 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,866 DEBUG Processing 239/518 atomic regions from SNP 71638 to 72239 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,109 DEBUG Processing 240/518 atomic regions from SNP 71939 to 72540 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,353 DEBUG Processing 241/518 atomic regions from SNP 72240 to 72841 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,572 DEBUG Processing 242/518 atomic regions from SNP 72541 to 73142 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,780 DEBUG Processing 243/518 atomic regions from SNP 72842 to 73443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,987 DEBUG Processing 244/518 atomic regions from SNP 73143 to 73744 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,209 DEBUG Processing 245/518 atomic regions from SNP 73444 to 74045 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,450 DEBUG Processing 246/518 atomic regions from SNP 73745 to 74346 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,686 DEBUG Processing 247/518 atomic regions from SNP 74046 to 74647 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,918 DEBUG Processing 248/518 atomic regions from SNP 74347 to 74948 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,144 DEBUG Processing 249/518 atomic regions from SNP 74648 to 75249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,352 DEBUG Processing 250/518 atomic regions from SNP 74949 to 75550 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,560 DEBUG Processing 251/518 atomic regions from SNP 75250 to 75851 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,790 DEBUG Processing 252/518 atomic regions from SNP 75551 to 76152 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,999 DEBUG Processing 253/518 atomic regions from SNP 75852 to 76453 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,209 DEBUG Processing 254/518 atomic regions from SNP 76153 to 76754 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,415 DEBUG Processing 255/518 atomic regions from SNP 76454 to 77055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,618 DEBUG Processing 256/518 atomic regions from SNP 76755 to 77355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,827 DEBUG Processing 257/518 atomic regions from SNP 77055 to 77655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,047 DEBUG Processing 258/518 atomic regions from SNP 77355 to 77955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,259 DEBUG Processing 259/518 atomic regions from SNP 77655 to 78255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,428 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:53:23,430 DEBUG chr19: Signal quantile: 0.989. signal threshold: 9. Best RMSEA: 0.017 2025-01-31 09:53:23,464 DEBUG Processing 260/518 atomic regions from SNP 77955 to 78555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,672 DEBUG Processing 261/518 atomic regions from SNP 78255 to 78855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,885 DEBUG Processing 262/518 atomic regions from SNP 78555 to 79155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:24,055 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:53:24,057 DEBUG chr18: Signal quantile: 0.994. signal threshold: 8. Best RMSEA: 0.024 2025-01-31 09:53:24,095 DEBUG Processing 263/518 atomic regions from SNP 78855 to 79455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:24,304 DEBUG Processing 264/518 atomic regions from SNP 79155 to 79755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:24,505 DEBUG Processing 265/518 atomic regions from SNP 79455 to 80055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:24,592 DEBUG chr19 total SNP count: 102626 2025-01-31 09:53:24,593 DEBUG chr19 length: 61431566 2025-01-31 09:53:24,593 DEBUG ----------------------------------------- 2025-01-31 09:53:24,593 INFO Processing SNPs in chr19 2025-01-31 09:53:24,699 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 102626)] 2025-01-31 09:53:24,712 DEBUG Processing 266/518 atomic regions from SNP 79755 to 80355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:24,771 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:24,920 DEBUG Processing 267/518 atomic regions from SNP 80055 to 80655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:25,125 DEBUG Processing 268/518 atomic regions from SNP 80355 to 80955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:25,331 DEBUG Processing 269/518 atomic regions from SNP 80655 to 81255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:25,536 DEBUG Processing 270/518 atomic regions from SNP 80955 to 81555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:25,750 DEBUG Processing 271/518 atomic regions from SNP 81255 to 81855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:25,776 DEBUG chr18 total SNP count: 151326 2025-01-31 09:53:25,776 DEBUG chr18 length: 90702639 2025-01-31 09:53:25,776 DEBUG ----------------------------------------- 2025-01-31 09:53:25,776 INFO Processing SNPs in chr18 2025-01-31 09:53:25,932 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 151326)] 2025-01-31 09:53:25,959 DEBUG Processing 272/518 atomic regions from SNP 81555 to 82155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:26,038 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:26,163 DEBUG Processing 273/518 atomic regions from SNP 81855 to 82455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:26,358 DEBUG Processing 274/518 atomic regions from SNP 82155 to 82755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:26,549 DEBUG Processing 275/518 atomic regions from SNP 82455 to 83055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:26,744 DEBUG Processing 276/518 atomic regions from SNP 82755 to 83355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:26,948 DEBUG Processing 277/518 atomic regions from SNP 83055 to 83655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:27,156 DEBUG Processing 278/518 atomic regions from SNP 83355 to 83955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:27,360 DEBUG Processing 279/518 atomic regions from SNP 83655 to 84255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:27,561 DEBUG Processing 280/518 atomic regions from SNP 83955 to 84555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:27,760 DEBUG Processing 281/518 atomic regions from SNP 84255 to 84855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:27,961 DEBUG Processing 282/518 atomic regions from SNP 84555 to 85155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:28,164 DEBUG Processing 283/518 atomic regions from SNP 84855 to 85455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:28,372 DEBUG Processing 284/518 atomic regions from SNP 85155 to 85755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:28,577 DEBUG Processing 285/518 atomic regions from SNP 85455 to 86055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:28,782 DEBUG Processing 286/518 atomic regions from SNP 85755 to 86355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:28,984 DEBUG Processing 287/518 atomic regions from SNP 86055 to 86655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:29,184 DEBUG Processing 288/518 atomic regions from SNP 86355 to 86955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:29,387 DEBUG Processing 289/518 atomic regions from SNP 86655 to 87255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:29,586 DEBUG Processing 290/518 atomic regions from SNP 86955 to 87555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:29,790 DEBUG Processing 291/518 atomic regions from SNP 87255 to 87855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:29,995 DEBUG Processing 292/518 atomic regions from SNP 87555 to 88155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:30,200 DEBUG Processing 293/518 atomic regions from SNP 87855 to 88455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:30,433 DEBUG Processing 294/518 atomic regions from SNP 88155 to 88755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:30,666 DEBUG Processing 295/518 atomic regions from SNP 88455 to 89055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:30,897 DEBUG Processing 296/518 atomic regions from SNP 88755 to 89355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:31,116 DEBUG Processing 297/518 atomic regions from SNP 89055 to 89655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:31,350 DEBUG Processing 298/518 atomic regions from SNP 89355 to 89955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:31,584 DEBUG Processing 299/518 atomic regions from SNP 89655 to 90255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:31,811 DEBUG Processing 300/518 atomic regions from SNP 89955 to 90555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:32,042 DEBUG Processing 301/518 atomic regions from SNP 90255 to 90855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:32,261 DEBUG Processing 302/518 atomic regions from SNP 90555 to 91155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:32,459 DEBUG Processing 303/518 atomic regions from SNP 90855 to 91455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:32,655 DEBUG Processing 304/518 atomic regions from SNP 91155 to 91755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:32,857 DEBUG Processing 305/518 atomic regions from SNP 91455 to 92055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:33,061 DEBUG Processing 306/518 atomic regions from SNP 91755 to 92355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:33,261 DEBUG Processing 307/518 atomic regions from SNP 92055 to 92655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:33,463 DEBUG Processing 308/518 atomic regions from SNP 92355 to 92955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:33,664 DEBUG Processing 309/518 atomic regions from SNP 92655 to 93255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:33,870 DEBUG Processing 310/518 atomic regions from SNP 92955 to 93555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:34,074 DEBUG Processing 311/518 atomic regions from SNP 93255 to 93855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:34,289 DEBUG Processing 312/518 atomic regions from SNP 93555 to 94155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:34,497 DEBUG Processing 313/518 atomic regions from SNP 93855 to 94455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:34,700 DEBUG Processing 314/518 atomic regions from SNP 94155 to 94755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:34,905 DEBUG Processing 315/518 atomic regions from SNP 94455 to 95055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:35,112 DEBUG Processing 316/518 atomic regions from SNP 94755 to 95355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:35,317 DEBUG Processing 317/518 atomic regions from SNP 95055 to 95655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:35,525 DEBUG Processing 318/518 atomic regions from SNP 95355 to 95955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:35,730 DEBUG Processing 319/518 atomic regions from SNP 95655 to 96255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:35,935 DEBUG Processing 320/518 atomic regions from SNP 95955 to 96555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:36,141 DEBUG Processing 321/518 atomic regions from SNP 96255 to 96855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:36,343 DEBUG Processing 322/518 atomic regions from SNP 96555 to 97155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:36,546 DEBUG Processing 323/518 atomic regions from SNP 96855 to 97455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:36,756 DEBUG Processing 324/518 atomic regions from SNP 97155 to 97755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:36,966 DEBUG Processing 325/518 atomic regions from SNP 97455 to 98055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:37,177 DEBUG Processing 326/518 atomic regions from SNP 97755 to 98355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:37,339 DEBUG Segmenting atomic regions: 2025-01-31 09:53:37,385 DEBUG Processing 1/341 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,389 DEBUG Processing 327/518 atomic regions from SNP 98055 to 98655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:37,586 DEBUG Processing 2/341 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,606 DEBUG Processing 328/518 atomic regions from SNP 98355 to 98955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:37,771 DEBUG Processing 3/341 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,827 DEBUG Processing 329/518 atomic regions from SNP 98655 to 99255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:37,959 DEBUG Processing 4/341 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,036 DEBUG Processing 330/518 atomic regions from SNP 98955 to 99555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:38,147 DEBUG Processing 5/341 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,244 DEBUG Processing 331/518 atomic regions from SNP 99255 to 99855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:38,351 DEBUG Processing 6/341 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,457 DEBUG Processing 332/518 atomic regions from SNP 99555 to 100155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:38,572 DEBUG Processing 7/341 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,671 DEBUG Processing 333/518 atomic regions from SNP 99855 to 100455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:38,767 DEBUG Processing 8/341 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,886 DEBUG Processing 334/518 atomic regions from SNP 100155 to 100755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:38,942 DEBUG Processing 9/341 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,102 DEBUG Processing 335/518 atomic regions from SNP 100455 to 101055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:39,132 DEBUG Processing 10/341 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,320 DEBUG Processing 336/518 atomic regions from SNP 100755 to 101355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:39,320 DEBUG Processing 11/341 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,517 DEBUG Processing 12/341 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,543 DEBUG Processing 337/518 atomic regions from SNP 101055 to 101655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:39,730 DEBUG Processing 13/341 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,760 DEBUG Processing 338/518 atomic regions from SNP 101355 to 101955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:39,925 DEBUG Processing 14/341 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,978 DEBUG Processing 339/518 atomic regions from SNP 101655 to 102255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:40,137 DEBUG Processing 15/341 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,193 DEBUG Processing 340/518 atomic regions from SNP 101955 to 102555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:40,348 DEBUG Processing 16/341 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,405 DEBUG Processing 341/518 atomic regions from SNP 102255 to 102855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:40,558 DEBUG Processing 17/341 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,613 DEBUG Processing 342/518 atomic regions from SNP 102555 to 103155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:40,771 DEBUG Processing 18/341 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,821 DEBUG Processing 343/518 atomic regions from SNP 102855 to 103455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:40,989 DEBUG Processing 19/341 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,028 DEBUG Processing 344/518 atomic regions from SNP 103155 to 103755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:41,210 DEBUG Processing 20/341 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,243 DEBUG Processing 345/518 atomic regions from SNP 103455 to 104055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:41,425 DEBUG Processing 21/341 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,456 DEBUG Processing 346/518 atomic regions from SNP 103755 to 104355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:41,617 DEBUG Processing 22/341 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,672 DEBUG Processing 347/518 atomic regions from SNP 104055 to 104655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:41,806 DEBUG Processing 23/341 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,881 DEBUG Processing 348/518 atomic regions from SNP 104355 to 104955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:42,024 DEBUG Processing 24/341 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,090 DEBUG Processing 349/518 atomic regions from SNP 104655 to 105255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:42,231 DEBUG Processing 25/341 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,301 DEBUG Processing 350/518 atomic regions from SNP 104955 to 105555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:42,439 DEBUG Processing 26/341 atomic regions from SNP 7525 to 8125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,512 DEBUG Processing 351/518 atomic regions from SNP 105255 to 105855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:42,619 DEBUG Processing 27/341 atomic regions from SNP 7825 to 8425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,720 DEBUG Processing 352/518 atomic regions from SNP 105555 to 106155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:42,791 DEBUG Processing 28/341 atomic regions from SNP 8125 to 8725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,924 DEBUG Processing 353/518 atomic regions from SNP 105855 to 106455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:42,965 DEBUG Processing 29/341 atomic regions from SNP 8425 to 9025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,129 DEBUG Processing 354/518 atomic regions from SNP 106155 to 106755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:43,144 DEBUG Processing 30/341 atomic regions from SNP 8725 to 9325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,318 DEBUG Processing 31/341 atomic regions from SNP 9025 to 9625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,334 DEBUG Processing 355/518 atomic regions from SNP 106455 to 107055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:43,493 DEBUG Processing 32/341 atomic regions from SNP 9325 to 9925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,537 DEBUG Processing 356/518 atomic regions from SNP 106755 to 107355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:43,691 DEBUG Processing 33/341 atomic regions from SNP 9625 to 10225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,740 DEBUG Processing 357/518 atomic regions from SNP 107055 to 107655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:43,906 DEBUG Processing 34/341 atomic regions from SNP 9925 to 10525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,948 DEBUG Processing 358/518 atomic regions from SNP 107355 to 107955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:44,113 DEBUG Processing 35/341 atomic regions from SNP 10225 to 10825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,155 DEBUG Processing 359/518 atomic regions from SNP 107655 to 108255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:44,290 DEBUG Processing 36/341 atomic regions from SNP 10525 to 11125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,365 DEBUG Processing 360/518 atomic regions from SNP 107955 to 108555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:44,460 DEBUG Processing 37/341 atomic regions from SNP 10825 to 11425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,550 DEBUG Segmenting atomic regions: 2025-01-31 09:53:44,571 DEBUG Processing 361/518 atomic regions from SNP 108255 to 108855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:44,618 DEBUG Processing 1/503 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:44,629 DEBUG Processing 38/341 atomic regions from SNP 11125 to 11725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,783 DEBUG Processing 362/518 atomic regions from SNP 108555 to 109155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:44,823 DEBUG Processing 2/503 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:44,835 DEBUG Processing 39/341 atomic regions from SNP 11425 to 12025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,996 DEBUG Processing 363/518 atomic regions from SNP 108855 to 109455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:45,029 DEBUG Processing 3/503 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,046 DEBUG Processing 40/341 atomic regions from SNP 11725 to 12325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,206 DEBUG Processing 364/518 atomic regions from SNP 109155 to 109755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:45,239 DEBUG Processing 4/503 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,252 DEBUG Processing 41/341 atomic regions from SNP 12025 to 12625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,408 DEBUG Processing 365/518 atomic regions from SNP 109455 to 110055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:45,444 DEBUG Processing 5/503 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,447 DEBUG Processing 42/341 atomic regions from SNP 12325 to 12925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,608 DEBUG Processing 366/518 atomic regions from SNP 109755 to 110355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:45,626 DEBUG Processing 43/341 atomic regions from SNP 12625 to 13225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,643 DEBUG Processing 6/503 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,803 DEBUG Processing 44/341 atomic regions from SNP 12925 to 13525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,816 DEBUG Processing 367/518 atomic regions from SNP 110055 to 110655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:45,845 DEBUG Processing 7/503 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,990 DEBUG Processing 45/341 atomic regions from SNP 13225 to 13825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,027 DEBUG Processing 368/518 atomic regions from SNP 110355 to 110955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:46,044 DEBUG Processing 8/503 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,173 DEBUG Processing 46/341 atomic regions from SNP 13525 to 14125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,242 DEBUG Processing 369/518 atomic regions from SNP 110655 to 111255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:46,251 DEBUG Processing 9/503 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,342 DEBUG Processing 47/341 atomic regions from SNP 13825 to 14425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,459 DEBUG Processing 370/518 atomic regions from SNP 110955 to 111555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:46,462 DEBUG Processing 10/503 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,517 DEBUG Processing 48/341 atomic regions from SNP 14125 to 14725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,666 DEBUG Processing 11/503 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,670 DEBUG Processing 371/518 atomic regions from SNP 111255 to 111855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:46,697 DEBUG Processing 49/341 atomic regions from SNP 14425 to 15025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,866 DEBUG Processing 12/503 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,872 DEBUG Processing 372/518 atomic regions from SNP 111555 to 112155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:46,872 DEBUG Processing 50/341 atomic regions from SNP 14725 to 15325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,048 DEBUG Processing 51/341 atomic regions from SNP 15025 to 15625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,068 DEBUG Processing 13/503 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,078 DEBUG Processing 373/518 atomic regions from SNP 111855 to 112455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:47,227 DEBUG Processing 52/341 atomic regions from SNP 15325 to 15925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,272 DEBUG Processing 14/503 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,284 DEBUG Processing 374/518 atomic regions from SNP 112155 to 112755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:47,409 DEBUG Processing 53/341 atomic regions from SNP 15625 to 16225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,477 DEBUG Processing 15/503 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,491 DEBUG Processing 375/518 atomic regions from SNP 112455 to 113055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:47,590 DEBUG Processing 54/341 atomic regions from SNP 15925 to 16525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,689 DEBUG Processing 16/503 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,706 DEBUG Processing 376/518 atomic regions from SNP 112755 to 113355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:47,764 DEBUG Processing 55/341 atomic regions from SNP 16225 to 16825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,902 DEBUG Processing 17/503 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,920 DEBUG Processing 377/518 atomic regions from SNP 113055 to 113655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:47,940 DEBUG Processing 56/341 atomic regions from SNP 16525 to 17125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,124 DEBUG Processing 57/341 atomic regions from SNP 16825 to 17425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,133 DEBUG Processing 378/518 atomic regions from SNP 113355 to 113955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:48,144 DEBUG Processing 18/503 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,306 DEBUG Processing 58/341 atomic regions from SNP 17125 to 17725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,348 DEBUG Processing 379/518 atomic regions from SNP 113655 to 114255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:48,392 DEBUG Processing 19/503 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,473 DEBUG Processing 59/341 atomic regions from SNP 17425 to 18025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,555 DEBUG Processing 380/518 atomic regions from SNP 113955 to 114555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:48,601 DEBUG Processing 20/503 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,653 DEBUG Processing 60/341 atomic regions from SNP 17725 to 18325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,762 DEBUG Processing 381/518 atomic regions from SNP 114255 to 114855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:48,809 DEBUG Processing 21/503 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,837 DEBUG Processing 61/341 atomic regions from SNP 18025 to 18625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,976 DEBUG Processing 382/518 atomic regions from SNP 114555 to 115155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:49,009 DEBUG Processing 22/503 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,011 DEBUG Processing 62/341 atomic regions from SNP 18325 to 18925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,194 DEBUG Processing 63/341 atomic regions from SNP 18625 to 19225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,207 DEBUG Processing 383/518 atomic regions from SNP 114855 to 115455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:49,218 DEBUG Processing 23/503 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,375 DEBUG Processing 64/341 atomic regions from SNP 18925 to 19525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,423 DEBUG Processing 384/518 atomic regions from SNP 115155 to 115755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:49,426 DEBUG Processing 24/503 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,555 DEBUG Processing 65/341 atomic regions from SNP 19225 to 19825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,633 DEBUG Processing 25/503 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,637 DEBUG Processing 385/518 atomic regions from SNP 115455 to 116055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:49,731 DEBUG Processing 66/341 atomic regions from SNP 19525 to 20125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,840 DEBUG Processing 26/503 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,852 DEBUG Processing 386/518 atomic regions from SNP 115755 to 116355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:49,910 DEBUG Processing 67/341 atomic regions from SNP 19825 to 20425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,042 DEBUG Processing 27/503 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,059 DEBUG Processing 387/518 atomic regions from SNP 116055 to 116655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:50,093 DEBUG Processing 68/341 atomic regions from SNP 20125 to 20725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,247 DEBUG Processing 28/503 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,272 DEBUG Processing 388/518 atomic regions from SNP 116355 to 116955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:50,277 DEBUG Processing 69/341 atomic regions from SNP 20425 to 21025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,464 DEBUG Processing 29/503 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,465 DEBUG Processing 70/341 atomic regions from SNP 20725 to 21325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,492 DEBUG Processing 389/518 atomic regions from SNP 116655 to 117255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:50,650 DEBUG Processing 71/341 atomic regions from SNP 21025 to 21625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,673 DEBUG Processing 30/503 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,707 DEBUG Processing 390/518 atomic regions from SNP 116955 to 117555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:50,834 DEBUG Processing 72/341 atomic regions from SNP 21325 to 21925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,881 DEBUG Processing 31/503 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,917 DEBUG Processing 391/518 atomic regions from SNP 117255 to 117855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:51,009 DEBUG Processing 73/341 atomic regions from SNP 21625 to 22225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,085 DEBUG Processing 32/503 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,127 DEBUG Processing 392/518 atomic regions from SNP 117555 to 118155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:51,183 DEBUG Processing 74/341 atomic regions from SNP 21925 to 22525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,280 DEBUG Processing 33/503 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,326 DEBUG Processing 393/518 atomic regions from SNP 117855 to 118455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:51,355 DEBUG Processing 75/341 atomic regions from SNP 22225 to 22825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,476 DEBUG Processing 34/503 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,531 DEBUG Processing 76/341 atomic regions from SNP 22525 to 23125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,534 DEBUG Processing 394/518 atomic regions from SNP 118155 to 118755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:51,677 DEBUG Processing 35/503 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,715 DEBUG Processing 77/341 atomic regions from SNP 22825 to 23425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,747 DEBUG Processing 395/518 atomic regions from SNP 118455 to 119055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:51,867 DEBUG Processing 36/503 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,888 DEBUG Processing 78/341 atomic regions from SNP 23125 to 23725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,953 DEBUG Processing 396/518 atomic regions from SNP 118755 to 119355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:52,061 DEBUG Processing 79/341 atomic regions from SNP 23425 to 24025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:52,068 DEBUG Processing 37/503 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,183 DEBUG Processing 397/518 atomic regions from SNP 119055 to 119655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:52,248 DEBUG Processing 80/341 atomic regions from SNP 23725 to 24325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:52,287 DEBUG Processing 38/503 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,377 DEBUG Processing 398/518 atomic regions from SNP 119355 to 119955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:52,419 DEBUG Processing 81/341 atomic regions from SNP 24025 to 24625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:52,485 DEBUG Processing 39/503 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,569 DEBUG Processing 399/518 atomic regions from SNP 119655 to 120255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:52,582 DEBUG Processing 82/341 atomic regions from SNP 24325 to 24925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:52,679 DEBUG Processing 40/503 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,755 DEBUG Processing 83/341 atomic regions from SNP 24625 to 25225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:52,774 DEBUG Processing 400/518 atomic regions from SNP 119955 to 120555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:52,876 DEBUG Processing 41/503 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,935 DEBUG Processing 84/341 atomic regions from SNP 24925 to 25525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:52,982 DEBUG Processing 401/518 atomic regions from SNP 120255 to 120855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:53,076 DEBUG Processing 42/503 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,110 DEBUG Processing 85/341 atomic regions from SNP 25225 to 25825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:53,194 DEBUG Processing 402/518 atomic regions from SNP 120555 to 121155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:53,281 DEBUG Processing 43/503 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,286 DEBUG Processing 86/341 atomic regions from SNP 25525 to 26125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:53,402 DEBUG Processing 403/518 atomic regions from SNP 120855 to 121455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:53,466 DEBUG Processing 87/341 atomic regions from SNP 25825 to 26425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:53,485 DEBUG Processing 44/503 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,603 DEBUG Processing 404/518 atomic regions from SNP 121155 to 121755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:53,643 DEBUG Processing 88/341 atomic regions from SNP 26125 to 26725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:53,686 DEBUG Processing 45/503 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,821 DEBUG Processing 89/341 atomic regions from SNP 26425 to 27025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:53,824 DEBUG Processing 405/518 atomic regions from SNP 121455 to 122055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:53,898 DEBUG Processing 46/503 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,996 DEBUG Processing 90/341 atomic regions from SNP 26725 to 27325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:54,031 DEBUG Processing 406/518 atomic regions from SNP 121755 to 122355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:54,100 DEBUG Processing 47/503 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,166 DEBUG Processing 91/341 atomic regions from SNP 27025 to 27625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:54,231 DEBUG Processing 407/518 atomic regions from SNP 122055 to 122655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:54,301 DEBUG Processing 48/503 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,340 DEBUG Processing 92/341 atomic regions from SNP 27325 to 27925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:54,430 DEBUG Processing 408/518 atomic regions from SNP 122355 to 122955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:54,502 DEBUG Processing 49/503 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,518 DEBUG Processing 93/341 atomic regions from SNP 27625 to 28225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:54,634 DEBUG Processing 409/518 atomic regions from SNP 122655 to 123255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:54,706 DEBUG Processing 94/341 atomic regions from SNP 27925 to 28525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:54,713 DEBUG Processing 50/503 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,836 DEBUG Processing 410/518 atomic regions from SNP 122955 to 123555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:54,882 DEBUG Processing 95/341 atomic regions from SNP 28225 to 28825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:54,912 DEBUG Processing 51/503 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,038 DEBUG Processing 411/518 atomic regions from SNP 123255 to 123855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:55,057 DEBUG Processing 96/341 atomic regions from SNP 28525 to 29125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:55,112 DEBUG Processing 52/503 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,226 DEBUG Processing 97/341 atomic regions from SNP 28825 to 29425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:55,239 DEBUG Processing 412/518 atomic regions from SNP 123555 to 124155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:55,311 DEBUG Processing 53/503 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,400 DEBUG Processing 98/341 atomic regions from SNP 29125 to 29725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:55,442 DEBUG Processing 413/518 atomic regions from SNP 123855 to 124455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:55,513 DEBUG Processing 54/503 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,575 DEBUG Processing 99/341 atomic regions from SNP 29425 to 30025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:55,645 DEBUG Processing 414/518 atomic regions from SNP 124155 to 124755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:55,714 DEBUG Processing 55/503 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,749 DEBUG Processing 100/341 atomic regions from SNP 29725 to 30325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:55,856 DEBUG Processing 415/518 atomic regions from SNP 124455 to 125055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:55,923 DEBUG Processing 56/503 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,931 DEBUG Processing 101/341 atomic regions from SNP 30025 to 30625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:56,063 DEBUG Processing 416/518 atomic regions from SNP 124755 to 125355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:56,118 DEBUG Processing 102/341 atomic regions from SNP 30325 to 30925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:56,131 DEBUG Processing 57/503 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,280 DEBUG Processing 417/518 atomic regions from SNP 125055 to 125655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:56,311 DEBUG Processing 103/341 atomic regions from SNP 30625 to 31225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:56,349 DEBUG Processing 58/503 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,488 DEBUG Processing 418/518 atomic regions from SNP 125355 to 125955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:56,494 DEBUG Processing 104/341 atomic regions from SNP 30925 to 31525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:56,560 DEBUG Processing 59/503 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,664 DEBUG Processing 105/341 atomic regions from SNP 31225 to 31825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:56,688 DEBUG Processing 419/518 atomic regions from SNP 125655 to 126255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:56,759 DEBUG Processing 60/503 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,836 DEBUG Processing 106/341 atomic regions from SNP 31525 to 32125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:56,893 DEBUG Processing 420/518 atomic regions from SNP 125955 to 126555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:56,953 DEBUG Processing 61/503 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,013 DEBUG Processing 107/341 atomic regions from SNP 31825 to 32425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:57,099 DEBUG Processing 421/518 atomic regions from SNP 126255 to 126855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:57,151 DEBUG Processing 62/503 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,188 DEBUG Processing 108/341 atomic regions from SNP 32125 to 32725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:57,313 DEBUG Processing 422/518 atomic regions from SNP 126555 to 127155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:57,359 DEBUG Processing 63/503 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,370 DEBUG Processing 109/341 atomic regions from SNP 32425 to 33025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:57,524 DEBUG Processing 423/518 atomic regions from SNP 126855 to 127455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:57,561 DEBUG Processing 110/341 atomic regions from SNP 32725 to 33325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:57,573 DEBUG Processing 64/503 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,732 DEBUG Processing 424/518 atomic regions from SNP 127155 to 127755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:57,745 DEBUG Processing 111/341 atomic regions from SNP 33025 to 33625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:57,796 DEBUG Processing 65/503 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,925 DEBUG Processing 112/341 atomic regions from SNP 33325 to 33925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:57,975 DEBUG Processing 425/518 atomic regions from SNP 127455 to 128055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:58,022 DEBUG Processing 66/503 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,109 DEBUG Processing 113/341 atomic regions from SNP 33625 to 34225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:58,180 DEBUG Processing 426/518 atomic regions from SNP 127755 to 128355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:58,223 DEBUG Processing 67/503 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,289 DEBUG Processing 114/341 atomic regions from SNP 33925 to 34525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:58,385 DEBUG Processing 427/518 atomic regions from SNP 128055 to 128655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:58,418 DEBUG Processing 68/503 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,485 DEBUG Processing 115/341 atomic regions from SNP 34225 to 34825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:58,591 DEBUG Processing 428/518 atomic regions from SNP 128355 to 128955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:58,617 DEBUG Processing 69/503 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,679 DEBUG Processing 116/341 atomic regions from SNP 34525 to 35125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:58,802 DEBUG Processing 429/518 atomic regions from SNP 128655 to 129255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:58,819 DEBUG Processing 70/503 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,850 DEBUG Processing 117/341 atomic regions from SNP 34825 to 35425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:59,007 DEBUG Processing 430/518 atomic regions from SNP 128955 to 129555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:59,019 DEBUG Processing 71/503 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,030 DEBUG Processing 118/341 atomic regions from SNP 35125 to 35725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:59,202 DEBUG Processing 119/341 atomic regions from SNP 35425 to 36025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:59,205 DEBUG Processing 431/518 atomic regions from SNP 129255 to 129855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:59,216 DEBUG Processing 72/503 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,366 DEBUG Processing 120/341 atomic regions from SNP 35725 to 36325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:59,399 DEBUG Processing 432/518 atomic regions from SNP 129555 to 130155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:59,401 DEBUG Processing 73/503 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,537 DEBUG Processing 121/341 atomic regions from SNP 36025 to 36625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:59,592 DEBUG Processing 74/503 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,595 DEBUG Processing 433/518 atomic regions from SNP 129855 to 130455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:59,714 DEBUG Processing 122/341 atomic regions from SNP 36325 to 36925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:59,792 DEBUG Processing 75/503 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,800 DEBUG Processing 434/518 atomic regions from SNP 130155 to 130755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:59,888 DEBUG Processing 123/341 atomic regions from SNP 36625 to 37225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:00,003 DEBUG Processing 76/503 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,010 DEBUG Processing 435/518 atomic regions from SNP 130455 to 131055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:00,066 DEBUG Processing 124/341 atomic regions from SNP 36925 to 37525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:00,222 DEBUG Processing 77/503 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,229 DEBUG Processing 436/518 atomic regions from SNP 130755 to 131355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:00,252 DEBUG Processing 125/341 atomic regions from SNP 37225 to 37825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:00,418 DEBUG Processing 78/503 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,432 DEBUG Processing 126/341 atomic regions from SNP 37525 to 38125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:00,433 DEBUG Processing 437/518 atomic regions from SNP 131055 to 131655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:00,603 DEBUG Processing 127/341 atomic regions from SNP 37825 to 38425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:00,605 DEBUG Processing 79/503 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,630 DEBUG Processing 438/518 atomic regions from SNP 131355 to 131955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:00,778 DEBUG Processing 128/341 atomic regions from SNP 38125 to 38725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:00,804 DEBUG Processing 80/503 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,829 DEBUG Processing 439/518 atomic regions from SNP 131655 to 132255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:00,955 DEBUG Processing 129/341 atomic regions from SNP 38425 to 39025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:01,005 DEBUG Processing 81/503 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,034 DEBUG Processing 440/518 atomic regions from SNP 131955 to 132555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:01,124 DEBUG Processing 130/341 atomic regions from SNP 38725 to 39325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:01,202 DEBUG Processing 82/503 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,241 DEBUG Processing 441/518 atomic regions from SNP 132255 to 132855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:01,296 DEBUG Processing 131/341 atomic regions from SNP 39025 to 39625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:01,395 DEBUG Processing 83/503 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,439 DEBUG Processing 442/518 atomic regions from SNP 132555 to 133155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:01,476 DEBUG Processing 132/341 atomic regions from SNP 39325 to 39925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:01,591 DEBUG Processing 84/503 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,637 DEBUG Processing 443/518 atomic regions from SNP 132855 to 133455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:01,641 DEBUG Processing 133/341 atomic regions from SNP 39625 to 40225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:01,803 DEBUG Processing 85/503 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,821 DEBUG Processing 134/341 atomic regions from SNP 39925 to 40525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:01,847 DEBUG Processing 444/518 atomic regions from SNP 133155 to 133755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:02,000 DEBUG Processing 135/341 atomic regions from SNP 40225 to 40825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:02,005 DEBUG Processing 86/503 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,062 DEBUG Processing 445/518 atomic regions from SNP 133455 to 134055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:02,170 DEBUG Processing 136/341 atomic regions from SNP 40525 to 41125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:02,200 DEBUG Processing 87/503 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,274 DEBUG Processing 446/518 atomic regions from SNP 133755 to 134355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:02,339 DEBUG Processing 137/341 atomic regions from SNP 40825 to 41425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:02,388 DEBUG Processing 88/503 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,477 DEBUG Processing 447/518 atomic regions from SNP 134055 to 134655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:02,521 DEBUG Processing 138/341 atomic regions from SNP 41125 to 41725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:02,586 DEBUG Processing 89/503 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,675 DEBUG Processing 448/518 atomic regions from SNP 134355 to 134955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:02,698 DEBUG Processing 139/341 atomic regions from SNP 41425 to 42025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:02,789 DEBUG Processing 90/503 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,863 DEBUG Processing 140/341 atomic regions from SNP 41725 to 42325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:02,872 DEBUG Processing 449/518 atomic regions from SNP 134655 to 135255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:02,988 DEBUG Processing 91/503 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,037 DEBUG Processing 141/341 atomic regions from SNP 42025 to 42625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:03,075 DEBUG Processing 450/518 atomic regions from SNP 134955 to 135555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:03,186 DEBUG Processing 92/503 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,217 DEBUG Processing 142/341 atomic regions from SNP 42325 to 42925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:03,287 DEBUG Processing 451/518 atomic regions from SNP 135255 to 135855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:03,388 DEBUG Processing 93/503 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,395 DEBUG Processing 143/341 atomic regions from SNP 42625 to 43225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:03,505 DEBUG Processing 452/518 atomic regions from SNP 135555 to 136155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:03,570 DEBUG Processing 144/341 atomic regions from SNP 42925 to 43525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:03,591 DEBUG Processing 94/503 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,715 DEBUG Processing 453/518 atomic regions from SNP 135855 to 136455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:03,748 DEBUG Processing 145/341 atomic regions from SNP 43225 to 43825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:03,790 DEBUG Processing 95/503 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,927 DEBUG Processing 454/518 atomic regions from SNP 136155 to 136755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:03,928 DEBUG Processing 146/341 atomic regions from SNP 43525 to 44125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:03,989 DEBUG Processing 96/503 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,107 DEBUG Processing 147/341 atomic regions from SNP 43825 to 44425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:04,139 DEBUG Processing 455/518 atomic regions from SNP 136455 to 137055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:04,189 DEBUG Processing 97/503 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,282 DEBUG Processing 148/341 atomic regions from SNP 44125 to 44725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:04,352 DEBUG Processing 456/518 atomic regions from SNP 136755 to 137355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:04,397 DEBUG Processing 98/503 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,449 DEBUG Processing 149/341 atomic regions from SNP 44425 to 45025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:04,563 DEBUG Processing 457/518 atomic regions from SNP 137055 to 137655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:04,609 DEBUG Processing 99/503 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,629 DEBUG Processing 150/341 atomic regions from SNP 44725 to 45325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:04,776 DEBUG Processing 458/518 atomic regions from SNP 137355 to 137955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:04,815 DEBUG Processing 151/341 atomic regions from SNP 45025 to 45625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:04,821 DEBUG Processing 100/503 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,989 DEBUG Processing 459/518 atomic regions from SNP 137655 to 138255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:04,990 DEBUG Processing 152/341 atomic regions from SNP 45325 to 45925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:05,022 DEBUG Processing 101/503 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,170 DEBUG Processing 153/341 atomic regions from SNP 45625 to 46225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:05,197 DEBUG Processing 460/518 atomic regions from SNP 137955 to 138555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:05,225 DEBUG Processing 102/503 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,357 DEBUG Processing 154/341 atomic regions from SNP 45925 to 46525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:05,411 DEBUG Processing 461/518 atomic regions from SNP 138255 to 138855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:05,429 DEBUG Processing 103/503 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,541 DEBUG Processing 155/341 atomic regions from SNP 46225 to 46825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:05,625 DEBUG Processing 462/518 atomic regions from SNP 138555 to 139155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:05,632 DEBUG Processing 104/503 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,715 DEBUG Processing 156/341 atomic regions from SNP 46525 to 47125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:05,842 DEBUG Processing 463/518 atomic regions from SNP 138855 to 139455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:05,846 DEBUG Processing 105/503 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,893 DEBUG Processing 157/341 atomic regions from SNP 46825 to 47425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:06,060 DEBUG Processing 464/518 atomic regions from SNP 139155 to 139755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:06,060 DEBUG Processing 106/503 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,076 DEBUG Processing 158/341 atomic regions from SNP 47125 to 47725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:06,259 DEBUG Processing 159/341 atomic regions from SNP 47425 to 48025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:06,268 DEBUG Processing 107/503 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,273 DEBUG Processing 465/518 atomic regions from SNP 139455 to 140055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:06,434 DEBUG Processing 160/341 atomic regions from SNP 47725 to 48325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:06,475 DEBUG Processing 108/503 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,484 DEBUG Processing 466/518 atomic regions from SNP 139755 to 140355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:06,603 DEBUG Processing 161/341 atomic regions from SNP 48025 to 48625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:06,672 DEBUG Processing 109/503 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,688 DEBUG Processing 467/518 atomic regions from SNP 140055 to 140655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:06,782 DEBUG Processing 162/341 atomic regions from SNP 48325 to 48925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:06,868 DEBUG Processing 110/503 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,888 DEBUG Processing 468/518 atomic regions from SNP 140355 to 140955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:06,967 DEBUG Processing 163/341 atomic regions from SNP 48625 to 49225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:07,067 DEBUG Processing 111/503 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,090 DEBUG Processing 469/518 atomic regions from SNP 140655 to 141255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:07,135 DEBUG Processing 164/341 atomic regions from SNP 48925 to 49525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:07,272 DEBUG Processing 112/503 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,295 DEBUG Processing 470/518 atomic regions from SNP 140955 to 141555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:07,308 DEBUG Processing 165/341 atomic regions from SNP 49225 to 49825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:07,480 DEBUG Processing 113/503 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,490 DEBUG Processing 166/341 atomic regions from SNP 49525 to 50125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:07,511 DEBUG Processing 471/518 atomic regions from SNP 141255 to 141855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:07,666 DEBUG Processing 167/341 atomic regions from SNP 49825 to 50425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:07,680 DEBUG Processing 114/503 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,730 DEBUG Processing 472/518 atomic regions from SNP 141555 to 142155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:07,834 DEBUG Processing 168/341 atomic regions from SNP 50125 to 50725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:07,874 DEBUG Processing 115/503 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,940 DEBUG Processing 473/518 atomic regions from SNP 141855 to 142455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:08,010 DEBUG Processing 169/341 atomic regions from SNP 50425 to 51025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:08,063 DEBUG Processing 116/503 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,141 DEBUG Processing 474/518 atomic regions from SNP 142155 to 142755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:08,189 DEBUG Processing 170/341 atomic regions from SNP 50725 to 51325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:08,264 DEBUG Processing 117/503 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,337 DEBUG Processing 475/518 atomic regions from SNP 142455 to 143055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:08,362 DEBUG Processing 171/341 atomic regions from SNP 51025 to 51625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:08,468 DEBUG Processing 118/503 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,534 DEBUG Processing 172/341 atomic regions from SNP 51325 to 51925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:08,540 DEBUG Processing 476/518 atomic regions from SNP 142755 to 143355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:08,675 DEBUG Processing 119/503 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,709 DEBUG Processing 173/341 atomic regions from SNP 51625 to 52225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:08,743 DEBUG Processing 477/518 atomic regions from SNP 143055 to 143655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:08,871 DEBUG Processing 120/503 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,880 DEBUG Processing 174/341 atomic regions from SNP 51925 to 52525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:08,946 DEBUG Processing 478/518 atomic regions from SNP 143355 to 143955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:09,047 DEBUG Processing 175/341 atomic regions from SNP 52225 to 52825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:09,062 DEBUG Processing 121/503 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,164 DEBUG Processing 479/518 atomic regions from SNP 143655 to 144255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:09,225 DEBUG Processing 176/341 atomic regions from SNP 52525 to 53125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:09,265 DEBUG Processing 122/503 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,376 DEBUG Processing 480/518 atomic regions from SNP 143955 to 144555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:09,410 DEBUG Processing 177/341 atomic regions from SNP 52825 to 53425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:09,469 DEBUG Processing 123/503 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,582 DEBUG Processing 481/518 atomic regions from SNP 144255 to 144855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:09,592 DEBUG Processing 178/341 atomic regions from SNP 53125 to 53725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:09,675 DEBUG Processing 124/503 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,759 DEBUG Processing 179/341 atomic regions from SNP 53425 to 54025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:09,783 DEBUG Processing 482/518 atomic regions from SNP 144555 to 145155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:09,879 DEBUG Processing 125/503 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,936 DEBUG Processing 180/341 atomic regions from SNP 53725 to 54325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:09,986 DEBUG Processing 483/518 atomic regions from SNP 144855 to 145455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:10,073 DEBUG Processing 126/503 atomic regions from SNP 37625 to 38225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,109 DEBUG Processing 181/341 atomic regions from SNP 54025 to 54625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:10,192 DEBUG Processing 484/518 atomic regions from SNP 145155 to 145755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:10,263 DEBUG Processing 127/503 atomic regions from SNP 37925 to 38525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,271 DEBUG Processing 182/341 atomic regions from SNP 54325 to 54925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:10,401 DEBUG Processing 485/518 atomic regions from SNP 145455 to 146055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:10,439 DEBUG Processing 183/341 atomic regions from SNP 54625 to 55225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:10,460 DEBUG Processing 128/503 atomic regions from SNP 38225 to 38825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,609 DEBUG Processing 486/518 atomic regions from SNP 145755 to 146355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:10,620 DEBUG Processing 184/341 atomic regions from SNP 54925 to 55525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:10,660 DEBUG Processing 129/503 atomic regions from SNP 38525 to 39125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,794 DEBUG Processing 185/341 atomic regions from SNP 55225 to 55825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:10,811 DEBUG Processing 487/518 atomic regions from SNP 146055 to 146655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:10,865 DEBUG Processing 130/503 atomic regions from SNP 38825 to 39425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,954 DEBUG Processing 186/341 atomic regions from SNP 55525 to 56125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:11,009 DEBUG Processing 488/518 atomic regions from SNP 146355 to 146955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:11,066 DEBUG Processing 131/503 atomic regions from SNP 39125 to 39725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,122 DEBUG Processing 187/341 atomic regions from SNP 55825 to 56425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:11,207 DEBUG Processing 489/518 atomic regions from SNP 146655 to 147255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:11,258 DEBUG Processing 132/503 atomic regions from SNP 39425 to 40025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,293 DEBUG Processing 188/341 atomic regions from SNP 56125 to 56725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:11,407 DEBUG Processing 490/518 atomic regions from SNP 146955 to 147555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:11,452 DEBUG Processing 133/503 atomic regions from SNP 39725 to 40325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,465 DEBUG Processing 189/341 atomic regions from SNP 56425 to 57025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:11,610 DEBUG Processing 491/518 atomic regions from SNP 147255 to 147855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:11,639 DEBUG Processing 190/341 atomic regions from SNP 56725 to 57325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:11,651 DEBUG Processing 134/503 atomic regions from SNP 40025 to 40625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,813 DEBUG Processing 492/518 atomic regions from SNP 147555 to 148155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:11,814 DEBUG Processing 191/341 atomic regions from SNP 57025 to 57625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:11,847 DEBUG Processing 135/503 atomic regions from SNP 40325 to 40925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,989 DEBUG Processing 192/341 atomic regions from SNP 57325 to 57925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:12,022 DEBUG Processing 493/518 atomic regions from SNP 147855 to 148455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:12,049 DEBUG Processing 136/503 atomic regions from SNP 40625 to 41225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,162 DEBUG Processing 193/341 atomic regions from SNP 57625 to 58225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:12,229 DEBUG Processing 494/518 atomic regions from SNP 148155 to 148755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:12,250 DEBUG Processing 137/503 atomic regions from SNP 40925 to 41525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,332 DEBUG Processing 194/341 atomic regions from SNP 57925 to 58525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:12,437 DEBUG Processing 495/518 atomic regions from SNP 148455 to 149055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:12,451 DEBUG Processing 138/503 atomic regions from SNP 41225 to 41825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,499 DEBUG Processing 195/341 atomic regions from SNP 58225 to 58825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:12,639 DEBUG Processing 496/518 atomic regions from SNP 148755 to 149355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:12,650 DEBUG Processing 139/503 atomic regions from SNP 41525 to 42125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,673 DEBUG Processing 196/341 atomic regions from SNP 58525 to 59125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:12,844 DEBUG Processing 497/518 atomic regions from SNP 149055 to 149655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:12,845 DEBUG Processing 197/341 atomic regions from SNP 58825 to 59425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:12,850 DEBUG Processing 140/503 atomic regions from SNP 41825 to 42425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,019 DEBUG Processing 198/341 atomic regions from SNP 59125 to 59725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:13,048 DEBUG Processing 141/503 atomic regions from SNP 42125 to 42725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,049 DEBUG Processing 498/518 atomic regions from SNP 149355 to 149955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:13,188 DEBUG Processing 199/341 atomic regions from SNP 59425 to 60025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:13,250 DEBUG Processing 142/503 atomic regions from SNP 42425 to 43025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,257 DEBUG Processing 499/518 atomic regions from SNP 149655 to 150255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:13,350 DEBUG Processing 200/341 atomic regions from SNP 59725 to 60325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:13,442 DEBUG Processing 143/503 atomic regions from SNP 42725 to 43325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,459 DEBUG Processing 500/518 atomic regions from SNP 149955 to 150555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:13,522 DEBUG Processing 201/341 atomic regions from SNP 60025 to 60625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:13,637 DEBUG Processing 144/503 atomic regions from SNP 43025 to 43625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,665 DEBUG Processing 501/518 atomic regions from SNP 150255 to 150855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:13,700 DEBUG Processing 202/341 atomic regions from SNP 60325 to 60925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:13,837 DEBUG Processing 145/503 atomic regions from SNP 43325 to 43925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,870 DEBUG Processing 502/518 atomic regions from SNP 150555 to 151155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:13,872 DEBUG Processing 203/341 atomic regions from SNP 60625 to 61225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:14,037 DEBUG Processing 146/503 atomic regions from SNP 43625 to 44225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,050 DEBUG Processing 204/341 atomic regions from SNP 60925 to 61525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:14,078 DEBUG Processing 503/518 atomic regions from SNP 150855 to 151455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:14,228 DEBUG Processing 205/341 atomic regions from SNP 61225 to 61825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:14,233 DEBUG Processing 147/503 atomic regions from SNP 43925 to 44525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,289 DEBUG Processing 504/518 atomic regions from SNP 151155 to 151755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:14,393 DEBUG Processing 206/341 atomic regions from SNP 61525 to 62125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:14,424 DEBUG Processing 148/503 atomic regions from SNP 44225 to 44825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,498 DEBUG Processing 505/518 atomic regions from SNP 151455 to 152055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:14,563 DEBUG Processing 207/341 atomic regions from SNP 61825 to 62425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:14,613 DEBUG Processing 149/503 atomic regions from SNP 44525 to 45125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,703 DEBUG Processing 506/518 atomic regions from SNP 151755 to 152355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:14,738 DEBUG Processing 208/341 atomic regions from SNP 62125 to 62725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:14,809 DEBUG Processing 150/503 atomic regions from SNP 44825 to 45425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,904 DEBUG Processing 507/518 atomic regions from SNP 152055 to 152655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:14,911 DEBUG Processing 209/341 atomic regions from SNP 62425 to 63025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:15,005 DEBUG Processing 151/503 atomic regions from SNP 45125 to 45725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,085 DEBUG Processing 210/341 atomic regions from SNP 62725 to 63325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:15,108 DEBUG Processing 508/518 atomic regions from SNP 152355 to 152955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:15,200 DEBUG Processing 152/503 atomic regions from SNP 45425 to 46025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,259 DEBUG Processing 211/341 atomic regions from SNP 63025 to 63625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:15,312 DEBUG Processing 509/518 atomic regions from SNP 152655 to 153255 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:15,390 DEBUG Processing 153/503 atomic regions from SNP 45725 to 46325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,439 DEBUG Processing 212/341 atomic regions from SNP 63325 to 63925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:15,521 DEBUG Processing 510/518 atomic regions from SNP 152955 to 153555 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:15,590 DEBUG Processing 154/503 atomic regions from SNP 46025 to 46625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,604 DEBUG Processing 213/341 atomic regions from SNP 63625 to 64225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:15,727 DEBUG Processing 511/518 atomic regions from SNP 153255 to 153855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:15,773 DEBUG Processing 214/341 atomic regions from SNP 63925 to 64525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:15,787 DEBUG Processing 155/503 atomic regions from SNP 46325 to 46925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,934 DEBUG Processing 512/518 atomic regions from SNP 153555 to 154155 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:15,953 DEBUG Processing 215/341 atomic regions from SNP 64225 to 64825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:15,987 DEBUG Processing 156/503 atomic regions from SNP 46625 to 47225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,133 DEBUG Processing 216/341 atomic regions from SNP 64525 to 65125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:16,142 DEBUG Processing 513/518 atomic regions from SNP 153855 to 154455 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:16,189 DEBUG Processing 157/503 atomic regions from SNP 46925 to 47525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,304 DEBUG Processing 217/341 atomic regions from SNP 64825 to 65425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:16,345 DEBUG Processing 514/518 atomic regions from SNP 154155 to 154755 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:16,387 DEBUG Processing 158/503 atomic regions from SNP 47225 to 47825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,475 DEBUG Processing 218/341 atomic regions from SNP 65125 to 65725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:16,552 DEBUG Processing 515/518 atomic regions from SNP 154455 to 155055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:16,586 DEBUG Processing 159/503 atomic regions from SNP 47525 to 48125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,642 DEBUG Processing 219/341 atomic regions from SNP 65425 to 66025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:16,757 DEBUG Processing 516/518 atomic regions from SNP 154755 to 155355 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:16,786 DEBUG Processing 160/503 atomic regions from SNP 47825 to 48425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,812 DEBUG Processing 220/341 atomic regions from SNP 65725 to 66325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:16,965 DEBUG Processing 517/518 atomic regions from SNP 155055 to 155655 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:16,983 DEBUG Processing 221/341 atomic regions from SNP 66025 to 66625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:16,992 DEBUG Processing 161/503 atomic regions from SNP 48125 to 48725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,157 DEBUG Processing 222/341 atomic regions from SNP 66325 to 66925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:17,176 DEBUG Processing 518/518 atomic regions from SNP 155355 to 155955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:17,200 DEBUG Processing 162/503 atomic regions from SNP 48425 to 49025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,314 DEBUG Unique SNPs positions in subchromosome 1: 155956 2025-01-31 09:54:17,326 DEBUG Processing 223/341 atomic regions from SNP 66625 to 67225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:17,396 DEBUG Processing 163/503 atomic regions from SNP 48725 to 49325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,493 DEBUG Processing 224/341 atomic regions from SNP 66925 to 67525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:17,584 DEBUG Processing 164/503 atomic regions from SNP 49025 to 49625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,670 DEBUG Processing 225/341 atomic regions from SNP 67225 to 67825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:17,776 DEBUG Processing 165/503 atomic regions from SNP 49325 to 49925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,844 DEBUG Processing 226/341 atomic regions from SNP 67525 to 68125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:17,977 DEBUG Processing 166/503 atomic regions from SNP 49625 to 50225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,012 DEBUG Processing 227/341 atomic regions from SNP 67825 to 68425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:18,160 DEBUG Processing 167/503 atomic regions from SNP 49925 to 50525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,177 DEBUG Processing 228/341 atomic regions from SNP 68125 to 68725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:18,341 DEBUG Processing 229/341 atomic regions from SNP 68425 to 69025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:18,350 DEBUG Processing 168/503 atomic regions from SNP 50225 to 50825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,511 DEBUG Processing 230/341 atomic regions from SNP 68725 to 69325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:18,543 DEBUG Processing 169/503 atomic regions from SNP 50525 to 51125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,673 DEBUG Processing 231/341 atomic regions from SNP 69025 to 69625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:18,736 DEBUG Processing 170/503 atomic regions from SNP 50825 to 51425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,842 DEBUG Processing 232/341 atomic regions from SNP 69325 to 69925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:18,932 DEBUG Processing 171/503 atomic regions from SNP 51125 to 51725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,003 DEBUG Processing 233/341 atomic regions from SNP 69625 to 70225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:19,117 DEBUG Processing 172/503 atomic regions from SNP 51425 to 52025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,163 DEBUG Processing 234/341 atomic regions from SNP 69925 to 70525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:19,303 DEBUG Processing 173/503 atomic regions from SNP 51725 to 52325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,321 DEBUG Processing 235/341 atomic regions from SNP 70225 to 70825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:19,364 DEBUG Subchromosome time: 131.07706755027175, subchromosome SNPs: 155956 2025-01-31 09:54:19,365 DEBUG Estimated BADs: [1.24, 0.31, 3.71, 0.31, 0.62, 3.71, 0.62, 4.95, 0.31, 1.24, 0.21] SNP counts: [23863, 7834, 24727, 7782, 5704, 6642, 11541, 2825, 5426, 51864, 7748] SNP IDs counts: [23863, 7834, 24727, 7782, 5704, 6642, 11541, 2825, 5426, 51864, 7748] Critical gap: 534199bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 17.96Mbp, 23.53Mbp, 37.06Mbp, 42.40Mbp, 45.55Mbp, 49.06Mbp, 55.93Mbp, 57.44Mbp, 60.78Mbp, 89.97Mbp, 94.99Mbp] 2025-01-31 09:54:19,365 DEBUG chr17 time: 131.07761173322797 s 2025-01-31 09:54:19,453 DEBUG chr17: Fitting background model for 11 segments 2025-01-31 09:54:19,495 DEBUG Processing 236/341 atomic regions from SNP 70525 to 71125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:19,497 DEBUG Processing 174/503 atomic regions from SNP 52025 to 52625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,667 DEBUG Processing 237/341 atomic regions from SNP 70825 to 71425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:19,691 DEBUG Processing 175/503 atomic regions from SNP 52325 to 52925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,828 DEBUG Processing 238/341 atomic regions from SNP 71125 to 71725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:19,883 DEBUG Processing 176/503 atomic regions from SNP 52625 to 53225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,000 DEBUG Processing 239/341 atomic regions from SNP 71425 to 72025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:20,124 DEBUG Processing 177/503 atomic regions from SNP 52925 to 53525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,232 DEBUG Processing 240/341 atomic regions from SNP 71725 to 72325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:20,325 DEBUG Processing 178/503 atomic regions from SNP 53225 to 53825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,427 DEBUG Processing 241/341 atomic regions from SNP 72025 to 72625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:20,538 DEBUG Processing 179/503 atomic regions from SNP 53525 to 54125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,599 DEBUG Processing 242/341 atomic regions from SNP 72325 to 72925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:20,759 DEBUG Processing 180/503 atomic regions from SNP 53825 to 54425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,762 DEBUG Processing 243/341 atomic regions from SNP 72625 to 73225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:20,930 DEBUG Processing 244/341 atomic regions from SNP 72925 to 73525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:20,965 DEBUG Processing 181/503 atomic regions from SNP 54125 to 54725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,120 DEBUG Processing 245/341 atomic regions from SNP 73225 to 73825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:21,158 DEBUG Processing 182/503 atomic regions from SNP 54425 to 55025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,294 DEBUG Processing 246/341 atomic regions from SNP 73525 to 74125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:21,351 DEBUG Processing 183/503 atomic regions from SNP 54725 to 55325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,454 DEBUG Processing 247/341 atomic regions from SNP 73825 to 74425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:21,546 DEBUG Processing 184/503 atomic regions from SNP 55025 to 55625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,622 DEBUG Processing 248/341 atomic regions from SNP 74125 to 74725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:21,751 DEBUG Processing 185/503 atomic regions from SNP 55325 to 55925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,802 DEBUG Processing 249/341 atomic regions from SNP 74425 to 75025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:21,956 DEBUG Processing 186/503 atomic regions from SNP 55625 to 56225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,980 DEBUG Processing 250/341 atomic regions from SNP 74725 to 75325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:22,171 DEBUG Processing 187/503 atomic regions from SNP 55925 to 56525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,174 DEBUG Processing 251/341 atomic regions from SNP 75025 to 75625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:22,371 DEBUG Processing 252/341 atomic regions from SNP 75325 to 75925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:22,388 DEBUG Processing 188/503 atomic regions from SNP 56225 to 56825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,577 DEBUG Processing 253/341 atomic regions from SNP 75625 to 76225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:22,616 DEBUG Processing 189/503 atomic regions from SNP 56525 to 57125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,780 DEBUG Processing 254/341 atomic regions from SNP 75925 to 76525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:22,837 DEBUG Processing 190/503 atomic regions from SNP 56825 to 57425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,964 DEBUG Processing 255/341 atomic regions from SNP 76225 to 76825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:23,068 DEBUG Processing 191/503 atomic regions from SNP 57125 to 57725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,141 DEBUG Processing 256/341 atomic regions from SNP 76525 to 77125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:23,290 DEBUG Processing 192/503 atomic regions from SNP 57425 to 58025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,329 DEBUG Processing 257/341 atomic regions from SNP 76825 to 77425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:23,495 DEBUG Processing 193/503 atomic regions from SNP 57725 to 58325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,520 DEBUG Processing 258/341 atomic regions from SNP 77125 to 77725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:23,690 DEBUG Processing 194/503 atomic regions from SNP 58025 to 58625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,695 DEBUG Processing 259/341 atomic regions from SNP 77425 to 78025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:23,865 DEBUG Processing 260/341 atomic regions from SNP 77725 to 78325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:23,887 DEBUG Processing 195/503 atomic regions from SNP 58325 to 58925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,042 DEBUG Processing 261/341 atomic regions from SNP 78025 to 78625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:24,089 DEBUG Processing 196/503 atomic regions from SNP 58625 to 59225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,225 DEBUG Processing 262/341 atomic regions from SNP 78325 to 78925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:24,292 DEBUG Processing 197/503 atomic regions from SNP 58925 to 59525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,403 DEBUG Processing 263/341 atomic regions from SNP 78625 to 79225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:24,499 DEBUG Processing 198/503 atomic regions from SNP 59225 to 59825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,581 DEBUG Processing 264/341 atomic regions from SNP 78925 to 79525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:24,725 DEBUG Processing 199/503 atomic regions from SNP 59525 to 60125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,761 DEBUG Processing 265/341 atomic regions from SNP 79225 to 79825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:24,934 DEBUG Processing 200/503 atomic regions from SNP 59825 to 60425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,941 DEBUG Processing 266/341 atomic regions from SNP 79525 to 80125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:25,114 DEBUG Processing 267/341 atomic regions from SNP 79825 to 80425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:25,145 DEBUG Processing 201/503 atomic regions from SNP 60125 to 60725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,291 DEBUG Processing 268/341 atomic regions from SNP 80125 to 80725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:25,347 DEBUG Processing 202/503 atomic regions from SNP 60425 to 61025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,466 DEBUG Processing 269/341 atomic regions from SNP 80425 to 81025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:25,548 DEBUG Processing 203/503 atomic regions from SNP 60725 to 61325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,641 DEBUG Processing 270/341 atomic regions from SNP 80725 to 81325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:25,745 DEBUG Processing 204/503 atomic regions from SNP 61025 to 61625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,820 DEBUG Processing 271/341 atomic regions from SNP 81025 to 81625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:25,939 DEBUG Processing 205/503 atomic regions from SNP 61325 to 61925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,997 DEBUG Processing 272/341 atomic regions from SNP 81325 to 81925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:26,138 DEBUG Processing 206/503 atomic regions from SNP 61625 to 62225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,171 DEBUG Processing 273/341 atomic regions from SNP 81625 to 82225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:26,344 DEBUG Processing 207/503 atomic regions from SNP 61925 to 62525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,347 DEBUG Processing 274/341 atomic regions from SNP 81925 to 82525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:26,527 DEBUG Processing 275/341 atomic regions from SNP 82225 to 82825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:26,550 DEBUG Processing 208/503 atomic regions from SNP 62225 to 62825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,700 DEBUG Processing 276/341 atomic regions from SNP 82525 to 83125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:26,749 DEBUG Processing 209/503 atomic regions from SNP 62525 to 63125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,879 DEBUG Processing 277/341 atomic regions from SNP 82825 to 83425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:26,952 DEBUG Processing 210/503 atomic regions from SNP 62825 to 63425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,060 DEBUG Processing 278/341 atomic regions from SNP 83125 to 83725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:27,153 DEBUG Processing 211/503 atomic regions from SNP 63125 to 63725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,233 DEBUG Processing 279/341 atomic regions from SNP 83425 to 84025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:27,357 DEBUG Processing 212/503 atomic regions from SNP 63425 to 64025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,409 DEBUG Processing 280/341 atomic regions from SNP 83725 to 84325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:27,558 DEBUG Processing 213/503 atomic regions from SNP 63725 to 64325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,589 DEBUG Processing 281/341 atomic regions from SNP 84025 to 84625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:27,759 DEBUG Processing 214/503 atomic regions from SNP 64025 to 64625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,766 DEBUG Processing 282/341 atomic regions from SNP 84325 to 84925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:27,943 DEBUG Processing 283/341 atomic regions from SNP 84625 to 85225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:27,962 DEBUG Processing 215/503 atomic regions from SNP 64325 to 64925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,125 DEBUG Processing 284/341 atomic regions from SNP 84925 to 85525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:28,167 DEBUG Processing 216/503 atomic regions from SNP 64625 to 65225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,309 DEBUG Processing 285/341 atomic regions from SNP 85225 to 85825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:28,372 DEBUG Processing 217/503 atomic regions from SNP 64925 to 65525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,485 DEBUG Processing 286/341 atomic regions from SNP 85525 to 86125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:28,578 DEBUG Processing 218/503 atomic regions from SNP 65225 to 65825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,657 DEBUG Processing 287/341 atomic regions from SNP 85825 to 86425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:28,777 DEBUG Processing 219/503 atomic regions from SNP 65525 to 66125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,837 DEBUG Processing 288/341 atomic regions from SNP 86125 to 86725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:28,974 DEBUG Processing 220/503 atomic regions from SNP 65825 to 66425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,016 DEBUG Processing 289/341 atomic regions from SNP 86425 to 87025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:29,168 DEBUG Processing 221/503 atomic regions from SNP 66125 to 66725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,188 DEBUG Processing 290/341 atomic regions from SNP 86725 to 87325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:29,362 DEBUG Processing 291/341 atomic regions from SNP 87025 to 87625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:29,371 DEBUG Processing 222/503 atomic regions from SNP 66425 to 67025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,541 DEBUG Processing 292/341 atomic regions from SNP 87325 to 87925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:29,578 DEBUG Processing 223/503 atomic regions from SNP 66725 to 67325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,730 DEBUG Processing 293/341 atomic regions from SNP 87625 to 88225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:29,779 DEBUG Processing 224/503 atomic regions from SNP 67025 to 67625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,925 DEBUG Processing 294/341 atomic regions from SNP 87925 to 88525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:29,985 DEBUG Processing 225/503 atomic regions from SNP 67325 to 67925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,098 DEBUG Processing 295/341 atomic regions from SNP 88225 to 88825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:30,186 DEBUG Processing 226/503 atomic regions from SNP 67625 to 68225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,274 DEBUG Processing 296/341 atomic regions from SNP 88525 to 89125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:30,387 DEBUG Processing 227/503 atomic regions from SNP 67925 to 68525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,460 DEBUG Processing 297/341 atomic regions from SNP 88825 to 89425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:30,590 DEBUG Processing 228/503 atomic regions from SNP 68225 to 68825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,641 DEBUG Processing 298/341 atomic regions from SNP 89125 to 89725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:30,793 DEBUG Processing 229/503 atomic regions from SNP 68525 to 69125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,814 DEBUG Processing 299/341 atomic regions from SNP 89425 to 90025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:30,995 DEBUG Processing 300/341 atomic regions from SNP 89725 to 90325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:30,999 DEBUG Processing 230/503 atomic regions from SNP 68825 to 69425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,179 DEBUG Processing 301/341 atomic regions from SNP 90025 to 90625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:31,209 DEBUG Processing 231/503 atomic regions from SNP 69125 to 69725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,357 DEBUG Processing 302/341 atomic regions from SNP 90325 to 90925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:31,415 DEBUG Processing 232/503 atomic regions from SNP 69425 to 70025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,534 DEBUG Processing 303/341 atomic regions from SNP 90625 to 91225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:31,619 DEBUG Processing 233/503 atomic regions from SNP 69725 to 70325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,716 DEBUG Processing 304/341 atomic regions from SNP 90925 to 91525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:31,818 DEBUG Processing 234/503 atomic regions from SNP 70025 to 70625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,899 DEBUG Processing 305/341 atomic regions from SNP 91225 to 91825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:32,020 DEBUG Processing 235/503 atomic regions from SNP 70325 to 70925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:32,079 DEBUG Processing 306/341 atomic regions from SNP 91525 to 92125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:32,227 DEBUG Processing 236/503 atomic regions from SNP 70625 to 71225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:32,256 DEBUG Processing 307/341 atomic regions from SNP 91825 to 92425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:32,430 DEBUG Processing 237/503 atomic regions from SNP 70925 to 71525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:32,432 DEBUG Processing 308/341 atomic regions from SNP 92125 to 92725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:32,612 DEBUG Processing 309/341 atomic regions from SNP 92425 to 93025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:32,634 DEBUG Processing 238/503 atomic regions from SNP 71225 to 71825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:32,784 DEBUG Processing 310/341 atomic regions from SNP 92725 to 93325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:32,833 DEBUG Processing 239/503 atomic regions from SNP 71525 to 72125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:32,956 DEBUG Processing 311/341 atomic regions from SNP 93025 to 93625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:33,029 DEBUG Processing 240/503 atomic regions from SNP 71825 to 72425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:33,135 DEBUG Processing 312/341 atomic regions from SNP 93325 to 93925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:33,229 DEBUG Processing 241/503 atomic regions from SNP 72125 to 72725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:33,315 DEBUG Processing 313/341 atomic regions from SNP 93625 to 94225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:33,425 DEBUG Processing 242/503 atomic regions from SNP 72425 to 73025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:33,498 DEBUG Processing 314/341 atomic regions from SNP 93925 to 94525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:33,625 DEBUG Processing 243/503 atomic regions from SNP 72725 to 73325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:33,675 DEBUG Processing 315/341 atomic regions from SNP 94225 to 94825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:33,830 DEBUG Processing 244/503 atomic regions from SNP 73025 to 73625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:33,851 DEBUG Processing 316/341 atomic regions from SNP 94525 to 95125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:34,032 DEBUG Processing 317/341 atomic regions from SNP 94825 to 95425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:34,047 DEBUG Processing 245/503 atomic regions from SNP 73325 to 73925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:34,219 DEBUG Processing 318/341 atomic regions from SNP 95125 to 95725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:34,256 DEBUG Processing 246/503 atomic regions from SNP 73625 to 74225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:34,404 DEBUG Processing 319/341 atomic regions from SNP 95425 to 96025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:34,464 DEBUG Processing 247/503 atomic regions from SNP 73925 to 74525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:34,583 DEBUG Processing 320/341 atomic regions from SNP 95725 to 96325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:34,668 DEBUG Processing 248/503 atomic regions from SNP 74225 to 74825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:34,760 DEBUG Processing 321/341 atomic regions from SNP 96025 to 96625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:34,869 DEBUG Processing 249/503 atomic regions from SNP 74525 to 75125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:34,934 DEBUG Processing 322/341 atomic regions from SNP 96325 to 96925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:35,068 DEBUG Processing 250/503 atomic regions from SNP 74825 to 75425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:35,107 DEBUG Processing 323/341 atomic regions from SNP 96625 to 97225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:35,267 DEBUG Processing 251/503 atomic regions from SNP 75125 to 75725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:35,284 DEBUG Processing 324/341 atomic regions from SNP 96925 to 97525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:35,464 DEBUG Processing 325/341 atomic regions from SNP 97225 to 97825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:35,470 DEBUG Processing 252/503 atomic regions from SNP 75425 to 76025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:35,643 DEBUG Processing 326/341 atomic regions from SNP 97525 to 98125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:35,671 DEBUG Processing 253/503 atomic regions from SNP 75725 to 76325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:35,823 DEBUG Processing 327/341 atomic regions from SNP 97825 to 98425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:35,872 DEBUG Processing 254/503 atomic regions from SNP 76025 to 76625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:36,003 DEBUG Processing 328/341 atomic regions from SNP 98125 to 98725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:36,073 DEBUG Processing 255/503 atomic regions from SNP 76325 to 76925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:36,176 DEBUG Processing 329/341 atomic regions from SNP 98425 to 99025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:36,274 DEBUG Processing 256/503 atomic regions from SNP 76625 to 77225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:36,350 DEBUG Processing 330/341 atomic regions from SNP 98725 to 99325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:36,468 DEBUG Processing 257/503 atomic regions from SNP 76925 to 77525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:36,524 DEBUG Processing 331/341 atomic regions from SNP 99025 to 99625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:36,665 DEBUG Processing 258/503 atomic regions from SNP 77225 to 77825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:36,694 DEBUG Processing 332/341 atomic regions from SNP 99325 to 99925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:36,867 DEBUG Processing 259/503 atomic regions from SNP 77525 to 78125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:36,869 DEBUG Processing 333/341 atomic regions from SNP 99625 to 100225 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:37,052 DEBUG Processing 334/341 atomic regions from SNP 99925 to 100525 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:37,074 DEBUG Processing 260/503 atomic regions from SNP 77825 to 78425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:37,226 DEBUG Processing 335/341 atomic regions from SNP 100225 to 100825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:37,273 DEBUG Processing 261/503 atomic regions from SNP 78125 to 78725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:37,400 DEBUG Processing 336/341 atomic regions from SNP 100525 to 101125 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:37,470 DEBUG Processing 262/503 atomic regions from SNP 78425 to 79025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:37,577 DEBUG Processing 337/341 atomic regions from SNP 100825 to 101425 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:37,664 DEBUG Processing 263/503 atomic regions from SNP 78725 to 79325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:37,752 DEBUG Processing 338/341 atomic regions from SNP 101125 to 101725 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:37,863 DEBUG Processing 264/503 atomic regions from SNP 79025 to 79625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:37,921 DEBUG Processing 339/341 atomic regions from SNP 101425 to 102025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:38,067 DEBUG Processing 265/503 atomic regions from SNP 79325 to 79925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:38,110 DEBUG Processing 340/341 atomic regions from SNP 101725 to 102325 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:38,269 DEBUG Processing 266/503 atomic regions from SNP 79625 to 80225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:38,288 DEBUG Processing 341/341 atomic regions from SNP 102025 to 102625 for chr19 (subchromosome 1 of 1). 2025-01-31 09:54:38,420 DEBUG Unique SNPs positions in subchromosome 1: 102626 2025-01-31 09:54:38,470 DEBUG Processing 267/503 atomic regions from SNP 79925 to 80525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:38,660 DEBUG Processing 268/503 atomic regions from SNP 80225 to 80825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:38,857 DEBUG Processing 269/503 atomic regions from SNP 80525 to 81125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:39,052 DEBUG Processing 270/503 atomic regions from SNP 80825 to 81425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:39,241 DEBUG Processing 271/503 atomic regions from SNP 81125 to 81725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:39,426 DEBUG Processing 272/503 atomic regions from SNP 81425 to 82025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:39,594 DEBUG Subchromosome time: 74.8233830332756, subchromosome SNPs: 102626 2025-01-31 09:54:39,595 DEBUG Estimated BADs: [4.20, 1.05, 3.15, 0.53, 1.05, 0.35, 1.05, 0.26, 1.05, 3.15, 1.05, 0.18, 1.05] SNP counts: [7991, 1784, 3687, 20249, 4529, 3283, 11383, 3307, 15541, 5115, 4535, 3605, 17617] SNP IDs counts: [7991, 1784, 3687, 20249, 4529, 3283, 11383, 3307, 15541, 5115, 4535, 3605, 17617] Critical gap: 417180bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 7.50Mbp, 8.71Mbp, 10.99Mbp, 22.78Mbp, 25.23Mbp, 27.09Mbp, 33.30Mbp, 35.44Mbp, 44.25Mbp, 46.96Mbp, 49.46Mbp, 51.72Mbp, 61.43Mbp] 2025-01-31 09:54:39,595 DEBUG chr19 time: 74.8238162882626 s 2025-01-31 09:54:39,612 DEBUG Processing 273/503 atomic regions from SNP 81725 to 82325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:39,657 DEBUG chr19: Fitting background model for 13 segments 2025-01-31 09:54:39,805 DEBUG Processing 274/503 atomic regions from SNP 82025 to 82625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:39,995 DEBUG Processing 275/503 atomic regions from SNP 82325 to 82925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:40,190 DEBUG Processing 276/503 atomic regions from SNP 82625 to 83225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:40,386 DEBUG Processing 277/503 atomic regions from SNP 82925 to 83525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:40,585 DEBUG Processing 278/503 atomic regions from SNP 83225 to 83825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:40,785 DEBUG Processing 279/503 atomic regions from SNP 83525 to 84125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:40,984 DEBUG Processing 280/503 atomic regions from SNP 83825 to 84425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:41,184 DEBUG Processing 281/503 atomic regions from SNP 84125 to 84725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:41,376 DEBUG Processing 282/503 atomic regions from SNP 84425 to 85025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:41,570 DEBUG Processing 283/503 atomic regions from SNP 84725 to 85325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:41,767 DEBUG Processing 284/503 atomic regions from SNP 85025 to 85625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:41,962 DEBUG Processing 285/503 atomic regions from SNP 85325 to 85925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:42,157 DEBUG Processing 286/503 atomic regions from SNP 85625 to 86225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:42,354 DEBUG Processing 287/503 atomic regions from SNP 85925 to 86525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:42,556 DEBUG Processing 288/503 atomic regions from SNP 86225 to 86825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:42,759 DEBUG Processing 289/503 atomic regions from SNP 86525 to 87125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:42,962 DEBUG Processing 290/503 atomic regions from SNP 86825 to 87425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:43,163 DEBUG Processing 291/503 atomic regions from SNP 87125 to 87725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:43,367 DEBUG Processing 292/503 atomic regions from SNP 87425 to 88025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:43,568 DEBUG Processing 293/503 atomic regions from SNP 87725 to 88325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:43,769 DEBUG Processing 294/503 atomic regions from SNP 88025 to 88625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:43,976 DEBUG Processing 295/503 atomic regions from SNP 88325 to 88925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:44,182 DEBUG Processing 296/503 atomic regions from SNP 88625 to 89225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:44,390 DEBUG Processing 297/503 atomic regions from SNP 88925 to 89525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:44,593 DEBUG Processing 298/503 atomic regions from SNP 89225 to 89825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:44,793 DEBUG Processing 299/503 atomic regions from SNP 89525 to 90125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:44,988 DEBUG Processing 300/503 atomic regions from SNP 89825 to 90425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:45,187 DEBUG Processing 301/503 atomic regions from SNP 90125 to 90725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:45,389 DEBUG Processing 302/503 atomic regions from SNP 90425 to 91025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:45,596 DEBUG Processing 303/503 atomic regions from SNP 90725 to 91325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:45,802 DEBUG Processing 304/503 atomic regions from SNP 91025 to 91625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:46,006 DEBUG Processing 305/503 atomic regions from SNP 91325 to 91925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:46,220 DEBUG Processing 306/503 atomic regions from SNP 91625 to 92225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:46,446 DEBUG Processing 307/503 atomic regions from SNP 91925 to 92525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:46,646 DEBUG Processing 308/503 atomic regions from SNP 92225 to 92825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:46,846 DEBUG Processing 309/503 atomic regions from SNP 92525 to 93125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:47,050 DEBUG Processing 310/503 atomic regions from SNP 92825 to 93425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:47,251 DEBUG Processing 311/503 atomic regions from SNP 93125 to 93725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:47,453 DEBUG Processing 312/503 atomic regions from SNP 93425 to 94025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:47,660 DEBUG Processing 313/503 atomic regions from SNP 93725 to 94325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:47,862 DEBUG Processing 314/503 atomic regions from SNP 94025 to 94625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:48,060 DEBUG Processing 315/503 atomic regions from SNP 94325 to 94925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:48,259 DEBUG Processing 316/503 atomic regions from SNP 94625 to 95225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:48,468 DEBUG Processing 317/503 atomic regions from SNP 94925 to 95525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:48,668 DEBUG Processing 318/503 atomic regions from SNP 95225 to 95825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:48,869 DEBUG Processing 319/503 atomic regions from SNP 95525 to 96125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:49,076 DEBUG Processing 320/503 atomic regions from SNP 95825 to 96425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:49,281 DEBUG Processing 321/503 atomic regions from SNP 96125 to 96725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:49,485 DEBUG Processing 322/503 atomic regions from SNP 96425 to 97025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:49,687 DEBUG Processing 323/503 atomic regions from SNP 96725 to 97325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:49,888 DEBUG Processing 324/503 atomic regions from SNP 97025 to 97625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:50,104 DEBUG Processing 325/503 atomic regions from SNP 97325 to 97925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:50,311 DEBUG Processing 326/503 atomic regions from SNP 97625 to 98225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:50,510 DEBUG Processing 327/503 atomic regions from SNP 97925 to 98525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:50,704 DEBUG Processing 328/503 atomic regions from SNP 98225 to 98825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:50,916 DEBUG Processing 329/503 atomic regions from SNP 98525 to 99125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:51,136 DEBUG Processing 330/503 atomic regions from SNP 98825 to 99425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:51,348 DEBUG Processing 331/503 atomic regions from SNP 99125 to 99725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:51,550 DEBUG Processing 332/503 atomic regions from SNP 99425 to 100025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:51,761 DEBUG Processing 333/503 atomic regions from SNP 99725 to 100325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:51,967 DEBUG Processing 334/503 atomic regions from SNP 100025 to 100625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:52,174 DEBUG Processing 335/503 atomic regions from SNP 100325 to 100925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:52,387 DEBUG Processing 336/503 atomic regions from SNP 100625 to 101225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:52,585 DEBUG Processing 337/503 atomic regions from SNP 100925 to 101525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:52,785 DEBUG Processing 338/503 atomic regions from SNP 101225 to 101825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:52,974 DEBUG Processing 339/503 atomic regions from SNP 101525 to 102125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:53,167 DEBUG Processing 340/503 atomic regions from SNP 101825 to 102425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:53,370 DEBUG Processing 341/503 atomic regions from SNP 102125 to 102725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:53,560 DEBUG Processing 342/503 atomic regions from SNP 102425 to 103025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:53,757 DEBUG Processing 343/503 atomic regions from SNP 102725 to 103325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:53,951 DEBUG Processing 344/503 atomic regions from SNP 103025 to 103625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:54,145 DEBUG Processing 345/503 atomic regions from SNP 103325 to 103925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:54,335 DEBUG Processing 346/503 atomic regions from SNP 103625 to 104225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:54,522 DEBUG Processing 347/503 atomic regions from SNP 103925 to 104525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:54,743 DEBUG Processing 348/503 atomic regions from SNP 104225 to 104825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:54,938 DEBUG Processing 349/503 atomic regions from SNP 104525 to 105125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:55,127 DEBUG Processing 350/503 atomic regions from SNP 104825 to 105425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:55,323 DEBUG Processing 351/503 atomic regions from SNP 105125 to 105725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:55,513 DEBUG Processing 352/503 atomic regions from SNP 105425 to 106025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:55,725 DEBUG Processing 353/503 atomic regions from SNP 105725 to 106325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:55,927 DEBUG Processing 354/503 atomic regions from SNP 106025 to 106625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:56,111 DEBUG Processing 355/503 atomic regions from SNP 106325 to 106925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:56,302 DEBUG Processing 356/503 atomic regions from SNP 106625 to 107225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:56,492 DEBUG Processing 357/503 atomic regions from SNP 106925 to 107525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:56,687 DEBUG Processing 358/503 atomic regions from SNP 107225 to 107825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:56,884 DEBUG Processing 359/503 atomic regions from SNP 107525 to 108125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:57,079 DEBUG Processing 360/503 atomic regions from SNP 107825 to 108425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:57,271 DEBUG Processing 361/503 atomic regions from SNP 108125 to 108725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:57,464 DEBUG Processing 362/503 atomic regions from SNP 108425 to 109025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:57,659 DEBUG Processing 363/503 atomic regions from SNP 108725 to 109325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:57,853 DEBUG Processing 364/503 atomic regions from SNP 109025 to 109625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:58,050 DEBUG Processing 365/503 atomic regions from SNP 109325 to 109925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:58,246 DEBUG Processing 366/503 atomic regions from SNP 109625 to 110225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:58,438 DEBUG Processing 367/503 atomic regions from SNP 109925 to 110525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:58,629 DEBUG Processing 368/503 atomic regions from SNP 110225 to 110825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:58,825 DEBUG Processing 369/503 atomic regions from SNP 110525 to 111125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:59,037 DEBUG Processing 370/503 atomic regions from SNP 110825 to 111425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:59,259 DEBUG Processing 371/503 atomic regions from SNP 111125 to 111725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:59,472 DEBUG Processing 372/503 atomic regions from SNP 111425 to 112025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:59,685 DEBUG Processing 373/503 atomic regions from SNP 111725 to 112325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:59,890 DEBUG Processing 374/503 atomic regions from SNP 112025 to 112625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:00,092 DEBUG Processing 375/503 atomic regions from SNP 112325 to 112925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:00,287 DEBUG Processing 376/503 atomic regions from SNP 112625 to 113225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:00,481 DEBUG Processing 377/503 atomic regions from SNP 112925 to 113525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:00,676 DEBUG Processing 378/503 atomic regions from SNP 113225 to 113825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:00,862 DEBUG Processing 379/503 atomic regions from SNP 113525 to 114125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:01,048 DEBUG Processing 380/503 atomic regions from SNP 113825 to 114425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:01,235 DEBUG Processing 381/503 atomic regions from SNP 114125 to 114725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:01,422 DEBUG Processing 382/503 atomic regions from SNP 114425 to 115025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:01,609 DEBUG Processing 383/503 atomic regions from SNP 114725 to 115325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:01,790 DEBUG Processing 384/503 atomic regions from SNP 115025 to 115625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:01,977 DEBUG Processing 385/503 atomic regions from SNP 115325 to 115925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:02,159 DEBUG Processing 386/503 atomic regions from SNP 115625 to 116225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:02,340 DEBUG Processing 387/503 atomic regions from SNP 115925 to 116525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:02,527 DEBUG Processing 388/503 atomic regions from SNP 116225 to 116825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:02,713 DEBUG Processing 389/503 atomic regions from SNP 116525 to 117125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:02,917 DEBUG Processing 390/503 atomic regions from SNP 116825 to 117425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:03,101 DEBUG Processing 391/503 atomic regions from SNP 117125 to 117725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:03,278 DEBUG Processing 392/503 atomic regions from SNP 117425 to 118025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:03,463 DEBUG Processing 393/503 atomic regions from SNP 117725 to 118325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:03,647 DEBUG Processing 394/503 atomic regions from SNP 118025 to 118625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:03,831 DEBUG Processing 395/503 atomic regions from SNP 118325 to 118925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:04,013 DEBUG Processing 396/503 atomic regions from SNP 118625 to 119225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:04,194 DEBUG Processing 397/503 atomic regions from SNP 118925 to 119525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:04,375 DEBUG Processing 398/503 atomic regions from SNP 119225 to 119825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:04,560 DEBUG Processing 399/503 atomic regions from SNP 119525 to 120125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:04,744 DEBUG Processing 400/503 atomic regions from SNP 119825 to 120425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:04,930 DEBUG Processing 401/503 atomic regions from SNP 120125 to 120725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:05,120 DEBUG Processing 402/503 atomic regions from SNP 120425 to 121025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:05,312 DEBUG Processing 403/503 atomic regions from SNP 120725 to 121325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:05,501 DEBUG Processing 404/503 atomic regions from SNP 121025 to 121625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:05,689 DEBUG Processing 405/503 atomic regions from SNP 121325 to 121925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:05,881 DEBUG Processing 406/503 atomic regions from SNP 121625 to 122225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:06,091 DEBUG Processing 407/503 atomic regions from SNP 121925 to 122525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:06,305 DEBUG Processing 408/503 atomic regions from SNP 122225 to 122825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:06,500 DEBUG Processing 409/503 atomic regions from SNP 122525 to 123125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:06,713 DEBUG Processing 410/503 atomic regions from SNP 122825 to 123425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:06,909 DEBUG Processing 411/503 atomic regions from SNP 123125 to 123725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:07,108 DEBUG Processing 412/503 atomic regions from SNP 123425 to 124025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:07,298 DEBUG Processing 413/503 atomic regions from SNP 123725 to 124325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:07,483 DEBUG Processing 414/503 atomic regions from SNP 124025 to 124625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:07,666 DEBUG Processing 415/503 atomic regions from SNP 124325 to 124925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:07,851 DEBUG Processing 416/503 atomic regions from SNP 124625 to 125225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:08,040 DEBUG Processing 417/503 atomic regions from SNP 124925 to 125525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:08,228 DEBUG Processing 418/503 atomic regions from SNP 125225 to 125825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:08,423 DEBUG Processing 419/503 atomic regions from SNP 125525 to 126125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:08,608 DEBUG Processing 420/503 atomic regions from SNP 125825 to 126425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:08,790 DEBUG Processing 421/503 atomic regions from SNP 126125 to 126725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:08,975 DEBUG Processing 422/503 atomic regions from SNP 126425 to 127025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:09,164 DEBUG Processing 423/503 atomic regions from SNP 126725 to 127325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:09,347 DEBUG Processing 424/503 atomic regions from SNP 127025 to 127625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:09,533 DEBUG Processing 425/503 atomic regions from SNP 127325 to 127925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:09,717 DEBUG Processing 426/503 atomic regions from SNP 127625 to 128225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:09,904 DEBUG Processing 427/503 atomic regions from SNP 127925 to 128525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:10,098 DEBUG Processing 428/503 atomic regions from SNP 128225 to 128825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:10,281 DEBUG Processing 429/503 atomic regions from SNP 128525 to 129125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:10,464 DEBUG Processing 430/503 atomic regions from SNP 128825 to 129425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:10,651 DEBUG Processing 431/503 atomic regions from SNP 129125 to 129725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:10,834 DEBUG Processing 432/503 atomic regions from SNP 129425 to 130025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:11,018 DEBUG Processing 433/503 atomic regions from SNP 129725 to 130325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:11,215 DEBUG Processing 434/503 atomic regions from SNP 130025 to 130625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:11,416 DEBUG Processing 435/503 atomic regions from SNP 130325 to 130925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:11,594 DEBUG Processing 436/503 atomic regions from SNP 130625 to 131225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:11,775 DEBUG Processing 437/503 atomic regions from SNP 130925 to 131525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:11,956 DEBUG Processing 438/503 atomic regions from SNP 131225 to 131825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:12,141 DEBUG Processing 439/503 atomic regions from SNP 131525 to 132125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:12,324 DEBUG Processing 440/503 atomic regions from SNP 131825 to 132425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:12,507 DEBUG Processing 441/503 atomic regions from SNP 132125 to 132725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:12,689 DEBUG Processing 442/503 atomic regions from SNP 132425 to 133025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:12,869 DEBUG Processing 443/503 atomic regions from SNP 132725 to 133325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:13,055 DEBUG Processing 444/503 atomic regions from SNP 133025 to 133625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:13,242 DEBUG Processing 445/503 atomic regions from SNP 133325 to 133925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:13,439 DEBUG Processing 446/503 atomic regions from SNP 133625 to 134225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:13,641 DEBUG Processing 447/503 atomic regions from SNP 133925 to 134525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:13,826 DEBUG Processing 448/503 atomic regions from SNP 134225 to 134825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:14,015 DEBUG Processing 449/503 atomic regions from SNP 134525 to 135125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:14,212 DEBUG Processing 450/503 atomic regions from SNP 134825 to 135425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:14,396 DEBUG Processing 451/503 atomic regions from SNP 135125 to 135725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:14,582 DEBUG Processing 452/503 atomic regions from SNP 135425 to 136025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:14,768 DEBUG Processing 453/503 atomic regions from SNP 135725 to 136325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:14,957 DEBUG Processing 454/503 atomic regions from SNP 136025 to 136625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:15,147 DEBUG Processing 455/503 atomic regions from SNP 136325 to 136925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:15,332 DEBUG Processing 456/503 atomic regions from SNP 136625 to 137225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:15,519 DEBUG Processing 457/503 atomic regions from SNP 136925 to 137525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:15,706 DEBUG Processing 458/503 atomic regions from SNP 137225 to 137825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:15,902 DEBUG Processing 459/503 atomic regions from SNP 137525 to 138125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:16,094 DEBUG Processing 460/503 atomic regions from SNP 137825 to 138425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:16,278 DEBUG Processing 461/503 atomic regions from SNP 138125 to 138725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:16,463 DEBUG Processing 462/503 atomic regions from SNP 138425 to 139025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:16,650 DEBUG Processing 463/503 atomic regions from SNP 138725 to 139325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:16,839 DEBUG Processing 464/503 atomic regions from SNP 139025 to 139625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:17,027 DEBUG Processing 465/503 atomic regions from SNP 139325 to 139925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:17,213 DEBUG Processing 466/503 atomic regions from SNP 139625 to 140225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:17,396 DEBUG Processing 467/503 atomic regions from SNP 139925 to 140525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:17,585 DEBUG Processing 468/503 atomic regions from SNP 140225 to 140825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:17,777 DEBUG Processing 469/503 atomic regions from SNP 140525 to 141125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:17,961 DEBUG Processing 470/503 atomic regions from SNP 140825 to 141425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:18,156 DEBUG Processing 471/503 atomic regions from SNP 141125 to 141725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:18,336 DEBUG Processing 472/503 atomic regions from SNP 141425 to 142025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:18,518 DEBUG Processing 473/503 atomic regions from SNP 141725 to 142325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:18,702 DEBUG Processing 474/503 atomic regions from SNP 142025 to 142625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:18,903 DEBUG Processing 475/503 atomic regions from SNP 142325 to 142925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:19,098 DEBUG Processing 476/503 atomic regions from SNP 142625 to 143225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:19,295 DEBUG Processing 477/503 atomic regions from SNP 142925 to 143525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:19,475 DEBUG Processing 478/503 atomic regions from SNP 143225 to 143825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:19,654 DEBUG Processing 479/503 atomic regions from SNP 143525 to 144125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:19,835 DEBUG Processing 480/503 atomic regions from SNP 143825 to 144425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:20,022 DEBUG Processing 481/503 atomic regions from SNP 144125 to 144725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:20,211 DEBUG Processing 482/503 atomic regions from SNP 144425 to 145025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:20,400 DEBUG Processing 483/503 atomic regions from SNP 144725 to 145325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:20,587 DEBUG Processing 484/503 atomic regions from SNP 145025 to 145625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:20,781 DEBUG Processing 485/503 atomic regions from SNP 145325 to 145925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:20,978 DEBUG Processing 486/503 atomic regions from SNP 145625 to 146225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:21,180 DEBUG Processing 487/503 atomic regions from SNP 145925 to 146525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:21,379 DEBUG Processing 488/503 atomic regions from SNP 146225 to 146825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:21,576 DEBUG Processing 489/503 atomic regions from SNP 146525 to 147125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:21,774 DEBUG Processing 490/503 atomic regions from SNP 146825 to 147425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:21,968 DEBUG Processing 491/503 atomic regions from SNP 147125 to 147725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:22,157 DEBUG Processing 492/503 atomic regions from SNP 147425 to 148025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:22,346 DEBUG Processing 493/503 atomic regions from SNP 147725 to 148325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:22,537 DEBUG Processing 494/503 atomic regions from SNP 148025 to 148625 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:22,742 DEBUG Processing 495/503 atomic regions from SNP 148325 to 148925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:22,933 DEBUG Processing 496/503 atomic regions from SNP 148625 to 149225 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:23,125 DEBUG Processing 497/503 atomic regions from SNP 148925 to 149525 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:23,320 DEBUG Processing 498/503 atomic regions from SNP 149225 to 149825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:23,514 DEBUG Processing 499/503 atomic regions from SNP 149525 to 150125 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:23,712 DEBUG Processing 500/503 atomic regions from SNP 149825 to 150425 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:23,908 DEBUG Processing 501/503 atomic regions from SNP 150125 to 150725 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:24,102 DEBUG Processing 502/503 atomic regions from SNP 150425 to 151025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:24,288 DEBUG Processing 503/503 atomic regions from SNP 150725 to 151325 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:24,415 DEBUG Unique SNPs positions in subchromosome 1: 151326 2025-01-31 09:55:24,834 DEBUG Subchromosome time: 118.79658934473991, subchromosome SNPs: 151326 2025-01-31 09:55:24,835 DEBUG Estimated BADs: [0.84, 2.53, 0.84, 3.37, 0.84, 1.69, 0.84, 0.42] SNP counts: [52723, 7201, 38476, 2326, 21377, 8047, 12167, 9009] SNP IDs counts: [52723, 7201, 38476, 2326, 21377, 8047, 12167, 9009] Critical gap: 516991bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 34.25Mbp, 38.18Mbp, 60.47Mbp, 61.69Mbp, 73.70Mbp, 78.12Mbp, 84.85Mbp, 90.70Mbp] 2025-01-31 09:55:24,835 DEBUG chr18 time: 118.7971475943923 s 2025-01-31 09:55:24,925 DEBUG chr18: Fitting background model for 8 segments 2025-01-31 09:55:31,247 DEBUG Results of fit_background_model emitted. 2025-01-31 09:55:31,430 INFO Signal to noise fit: SPOT=0.30±0.12 2025-01-31 09:55:31,436 INFO Final SPOT score: 0.30±0.12. Refitted 0 segments. 2025-01-31 09:55:31,503 INFO Estimating per-bp parameters of background model 2025-01-31 09:55:31,523 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:55:31,523 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 09:55:38,390 DEBUG chr2:3051000-8205751: Successfully fit background model for 4,784,118 bp. Use segment r for 0 bp 2025-01-31 09:55:38,892 DEBUG chr4:3050000-8640251: Successfully fit background model for 4,717,635 bp. Use segment r for 1,644 bp 2025-01-31 09:55:39,014 DEBUG chrX:3055000-7543251: Successfully fit background model for 1,997,063 bp. Use segment r for 0 bp 2025-01-31 09:55:39,075 DEBUG chrX:7543251-7966751: Successfully fit background model for 414,087 bp. Use segment r for 0 bp 2025-01-31 09:55:39,666 DEBUG chr2:8205751-18019251: Successfully fit background model for 8,912,477 bp. Use segment r for 0 bp 2025-01-31 09:55:39,871 DEBUG chr4:8640251-16327251: Successfully fit background model for 6,928,964 bp. Use segment r for 0 bp 2025-01-31 09:55:39,924 DEBUG chrX:7966751-14208751: Successfully fit background model for 5,487,788 bp. Use segment r for 0 bp 2025-01-31 09:55:40,632 DEBUG chr3:3000000-19147751: Successfully fit background model for 13,828,116 bp. Use segment r for 7,032 bp 2025-01-31 09:55:40,717 DEBUG chr1:3000500-16617751: Successfully fit background model for 12,102,278 bp. Use segment r for 0 bp 2025-01-31 09:55:40,753 DEBUG chrX:14208751-21586751: Successfully fit background model for 6,348,736 bp. Use segment r for 0 bp 2025-01-31 09:55:40,757 DEBUG chr3:19147751-19999251: Successfully fit background model for 780,200 bp. Use segment r for 0 bp 2025-01-31 09:55:40,814 DEBUG chr2:18019251-24918751: Successfully fit background model for 6,143,399 bp. Use segment r for 6,073 bp 2025-01-31 09:55:41,378 DEBUG chr5:3002500-20878751: Successfully fit background model for 14,472,670 bp. Use segment r for 11,740 bp 2025-01-31 09:55:41,598 DEBUG chrX:21586751-26910501: Successfully fit background model for 2,731,898 bp. Use segment r for 1,486 bp 2025-01-31 09:55:41,822 DEBUG chr5:20878751-24321751: Successfully fit background model for 3,171,694 bp. Use segment r for 0 bp 2025-01-31 09:55:41,916 DEBUG chr5:24321751-24925751: Successfully fit background model for 582,536 bp. Use segment r for 0 bp 2025-01-31 09:55:42,126 DEBUG chr4:16327251-32514501: Successfully fit background model for 14,349,710 bp. Use segment r for 0 bp 2025-01-31 09:55:42,384 DEBUG chr4:32514501-34686251: Successfully fit background model for 2,043,647 bp. Use segment r for 0 bp 2025-01-31 09:55:42,416 DEBUG chr2:24918751-36259251: Successfully fit background model for 11,019,756 bp. Use segment r for 0 bp 2025-01-31 09:55:42,511 DEBUG chr2:36259251-36957751: Successfully fit background model for 580,587 bp. Use segment r for 0 bp 2025-01-31 09:55:42,820 DEBUG chr2:36957751-39373751: Successfully fit background model for 2,249,972 bp. Use segment r for 0 bp 2025-01-31 09:55:42,991 DEBUG chr5:24925751-30571751: Successfully fit background model for 5,062,481 bp. Use segment r for 1,602 bp 2025-01-31 09:55:43,080 DEBUG chr5:30571751-31242251: Successfully fit background model for 650,166 bp. Use segment r for 0 bp 2025-01-31 09:55:43,113 DEBUG chr3:19999251-30584751: Successfully fit background model for 9,439,321 bp. Use segment r for 3,843 bp 2025-01-31 09:55:43,121 DEBUG chr4:34686251-40133251: Successfully fit background model for 4,854,056 bp. Use segment r for 0 bp 2025-01-31 09:55:43,143 DEBUG chrX:31132500-39144251: Successfully fit background model for 3,011,248 bp. Use segment r for 4,042 bp 2025-01-31 09:55:43,215 DEBUG chr2:39373751-43094751: Successfully fit background model for 3,361,620 bp. Use segment r for 0 bp 2025-01-31 09:55:43,405 DEBUG chr4:40133251-41855501: Successfully fit background model for 1,562,206 bp. Use segment r for 848 bp 2025-01-31 09:55:43,691 DEBUG chr5:31242251-36694251: Successfully fit background model for 5,193,356 bp. Use segment r for 0 bp 2025-01-31 09:55:43,840 DEBUG chr3:30584751-36464751: Successfully fit background model for 5,392,994 bp. Use segment r for 0 bp 2025-01-31 09:55:44,039 DEBUG chr4:42706000-48815501: Successfully fit background model for 5,790,676 bp. Use segment r for 0 bp 2025-01-31 09:55:44,078 DEBUG chr5:36694251-39872751: Successfully fit background model for 2,992,583 bp. Use segment r for 0 bp 2025-01-31 09:55:44,250 DEBUG chrX:39144251-48135751: Successfully fit background model for 7,790,168 bp. Use segment r for 0 bp 2025-01-31 09:55:44,397 DEBUG chr4:48815501-52273501: Successfully fit background model for 3,030,808 bp. Use segment r for 0 bp 2025-01-31 09:55:44,470 DEBUG chr1:16617751-33446251: Successfully fit background model for 14,981,295 bp. Use segment r for 281 bp 2025-01-31 09:55:44,519 DEBUG chrX:48135751-50549251: Successfully fit background model for 2,066,375 bp. Use segment r for 0 bp 2025-01-31 09:55:44,549 DEBUG chrX:50549251-50637751: Successfully fit background model for 80,897 bp. Use segment r for 0 bp 2025-01-31 09:55:45,049 DEBUG chr1:33446251-39383751: Successfully fit background model for 5,665,003 bp. Use segment r for 0 bp 2025-01-31 09:55:45,523 DEBUG chr1:39383751-44096751: Successfully fit background model for 4,510,764 bp. Use segment r for 0 bp 2025-01-31 09:55:45,543 DEBUG chr1:44096751-44167751: Successfully fit background model for 69,297 bp. Use segment r for 0 bp 2025-01-31 09:55:45,893 DEBUG chr5:39872751-51048751: Successfully fit background model for 10,120,313 bp. Use segment r for 0 bp 2025-01-31 09:55:46,325 DEBUG chr5:51048751-55224251: Successfully fit background model for 3,950,574 bp. Use segment r for 0 bp 2025-01-31 09:55:46,688 DEBUG chr1:44167751-52111251: Successfully fit background model for 6,910,820 bp. Use segment r for 0 bp 2025-01-31 09:55:47,042 DEBUG chr3:36464751-50744751: Successfully fit background model for 12,770,389 bp. Use segment r for 42,772 bp 2025-01-31 09:55:47,081 DEBUG chr2:43094751-66666751: Successfully fit background model for 21,726,269 bp. Use segment r for 0 bp 2025-01-31 09:55:47,171 DEBUG chr3:50744751-51597751: Successfully fit background model for 774,649 bp. Use segment r for 0 bp 2025-01-31 09:55:47,538 DEBUG chr4:52273501-64115251: Successfully fit background model for 9,495,047 bp. Use segment r for 19,772 bp 2025-01-31 09:55:48,120 DEBUG chr5:55224251-63128751: Successfully fit background model for 6,985,378 bp. Use segment r for 3,508 bp 2025-01-31 09:55:48,503 DEBUG chr1:52111251-64530751: Successfully fit background model for 11,544,495 bp. Use segment r for 0 bp 2025-01-31 09:55:48,554 DEBUG chr1:64530751-64739751: Successfully fit background model for 200,242 bp. Use segment r for 0 bp 2025-01-31 09:55:48,772 DEBUG chr5:63128751-68479751: Successfully fit background model for 5,031,773 bp. Use segment r for 0 bp 2025-01-31 09:55:49,059 DEBUG chr5:68479751-71278751: Successfully fit background model for 2,474,743 bp. Use segment r for 0 bp 2025-01-31 09:55:49,326 DEBUG chr2:66666751-81256501: Successfully fit background model for 13,824,532 bp. Use segment r for 0 bp 2025-01-31 09:55:49,707 DEBUG chr2:81256501-84648251: Successfully fit background model for 2,883,690 bp. Use segment r for 0 bp 2025-01-31 09:55:49,790 DEBUG chr2:84648251-84868251: Successfully fit background model for 214,894 bp. Use segment r for 0 bp 2025-01-31 09:55:49,869 DEBUG chr5:71278751-78390251: Successfully fit background model for 6,631,980 bp. Use segment r for 0 bp 2025-01-31 09:55:49,926 DEBUG chr2:84868251-85918751: Successfully fit background model for 961,451 bp. Use segment r for 0 bp 2025-01-31 09:55:50,209 DEBUG chr1:64739751-74235751: Successfully fit background model for 8,818,477 bp. Use segment r for 0 bp 2025-01-31 09:55:50,359 DEBUG chr1:74235751-75405751: Successfully fit background model for 1,074,164 bp. Use segment r for 0 bp 2025-01-31 09:55:50,407 DEBUG chrX:50637751-72917751: Successfully fit background model for 18,196,420 bp. Use segment r for 912 bp 2025-01-31 09:55:50,408 DEBUG chr5:78390251-83621251: Successfully fit background model for 4,708,982 bp. Use segment r for 0 bp 2025-01-31 09:55:50,530 DEBUG chr2:85918751-89454751: Successfully fit background model for 3,072,174 bp. Use segment r for 2,718 bp 2025-01-31 09:55:50,608 DEBUG chrX:72917751-74223251: Successfully fit background model for 1,076,334 bp. Use segment r for 0 bp 2025-01-31 09:55:50,836 DEBUG chr2:89454751-92369251: Successfully fit background model for 2,547,104 bp. Use segment r for 0 bp 2025-01-31 09:55:51,122 DEBUG chr4:64115251-79958251: Successfully fit background model for 14,034,717 bp. Use segment r for 14 bp 2025-01-31 09:55:51,212 DEBUG chr2:92369251-95768251: Successfully fit background model for 3,174,324 bp. Use segment r for 0 bp 2025-01-31 09:55:51,257 DEBUG chr3:51597751-68978251: Successfully fit background model for 15,719,023 bp. Use segment r for 4,029 bp 2025-01-31 09:55:52,004 DEBUG chr5:83621251-92073751: Successfully fit background model for 7,577,484 bp. Use segment r for 2,557 bp 2025-01-31 09:55:52,025 DEBUG chr2:95768251-100879501: Successfully fit background model for 4,217,188 bp. Use segment r for 1,612 bp 2025-01-31 09:55:52,436 DEBUG chr1:75405751-86142001: Successfully fit background model for 9,469,129 bp. Use segment r for 556 bp 2025-01-31 09:55:52,548 DEBUG chr1:86142001-87035751: Successfully fit background model for 848,569 bp. Use segment r for 0 bp 2025-01-31 09:55:52,779 DEBUG chr2:100879501-108071751: Successfully fit background model for 6,788,900 bp. Use segment r for 0 bp 2025-01-31 09:55:53,263 DEBUG chr1:87035751-93597751: Successfully fit background model for 6,311,319 bp. Use segment r for 0 bp 2025-01-31 09:55:53,313 DEBUG chr1:93597751-93826251: Successfully fit background model for 223,293 bp. Use segment r for 0 bp 2025-01-31 09:55:54,063 DEBUG chr2:108071751-118647751: Successfully fit background model for 9,675,746 bp. Use segment r for 0 bp 2025-01-31 09:55:54,385 DEBUG chr3:68978251-84011751: Successfully fit background model for 13,573,467 bp. Use segment r for 4,193 bp 2025-01-31 09:55:54,437 DEBUG chr2:118647751-122117251: Successfully fit background model for 3,336,122 bp. Use segment r for 0 bp 2025-01-31 09:55:54,782 DEBUG chr3:84011751-87720751: Successfully fit background model for 3,531,496 bp. Use segment r for 0 bp 2025-01-31 09:55:54,950 DEBUG chr4:79958251-106490251: Successfully fit background model for 24,265,733 bp. Use segment r for 0 bp 2025-01-31 09:55:54,979 DEBUG chr2:122117251-127206251: Successfully fit background model for 4,719,195 bp. Use segment r for 0 bp 2025-01-31 09:55:55,044 DEBUG chr1:93826251-105987751: Successfully fit background model for 10,617,223 bp. Use segment r for 0 bp 2025-01-31 09:55:55,066 DEBUG chr3:87720751-90417751: Successfully fit background model for 2,561,770 bp. Use segment r for 0 bp 2025-01-31 09:55:55,295 DEBUG chr1:105987751-108285001: Successfully fit background model for 2,091,142 bp. Use segment r for 0 bp 2025-01-31 09:55:55,376 DEBUG chr2:127206251-131147751: Successfully fit background model for 3,794,252 bp. Use segment r for 0 bp 2025-01-31 09:55:55,429 DEBUG chr4:106490251-110618751: Successfully fit background model for 3,893,419 bp. Use segment r for 0 bp 2025-01-31 09:55:55,752 DEBUG chr3:90417751-94471751: Successfully fit background model for 3,141,964 bp. Use segment r for 316 bp 2025-01-31 09:55:55,988 DEBUG chr3:94471751-96660251: Successfully fit background model for 1,989,373 bp. Use segment r for 0 bp 2025-01-31 09:55:56,058 DEBUG chrX:74223251-101253751: Successfully fit background model for 22,900,587 bp. Use segment r for 3,040 bp 2025-01-31 09:55:56,232 DEBUG chr4:110618751-115038251: Successfully fit background model for 3,895,315 bp. Use segment r for 40,322 bp 2025-01-31 09:55:56,540 DEBUG chr1:108285001-118309751: Successfully fit background model for 8,711,986 bp. Use segment r for 0 bp 2025-01-31 09:55:56,606 DEBUG chrX:101253751-105983751: Successfully fit background model for 4,173,590 bp. Use segment r for 0 bp 2025-01-31 09:55:56,730 DEBUG chr1:118309751-119989751: Successfully fit background model for 1,631,862 bp. Use segment r for 0 bp 2025-01-31 09:55:56,950 DEBUG chr5:92073751-113722251: Successfully fit background model for 18,109,505 bp. Use segment r for 8,996 bp 2025-01-31 09:55:57,192 DEBUG chr5:113722251-115538751: Successfully fit background model for 1,767,108 bp. Use segment r for 0 bp 2025-01-31 09:55:57,539 DEBUG chr3:96660251-108834251: Successfully fit background model for 11,309,133 bp. Use segment r for 0 bp 2025-01-31 09:55:57,714 DEBUG chr5:115538751-120086251: Successfully fit background model for 4,452,296 bp. Use segment r for 0 bp 2025-01-31 09:55:57,980 DEBUG chr1:119989751-130979251: Successfully fit background model for 10,215,531 bp. Use segment r for 0 bp 2025-01-31 09:55:58,027 DEBUG chr2:131147751-152328751: Successfully fit background model for 19,461,219 bp. Use segment r for 0 bp 2025-01-31 09:55:58,292 DEBUG chr3:108834251-115712251: Successfully fit background model for 5,914,033 bp. Use segment r for 0 bp 2025-01-31 09:55:58,329 DEBUG chr5:120086251-125404751: Successfully fit background model for 5,093,563 bp. Use segment r for 0 bp 2025-01-31 09:55:58,406 DEBUG chr3:115712251-116613751: Successfully fit background model for 863,921 bp. Use segment r for 0 bp 2025-01-31 09:55:58,568 DEBUG chr2:152328751-157418751: Successfully fit background model for 4,885,959 bp. Use segment r for 0 bp 2025-01-31 09:55:58,568 DEBUG chr1:130979251-136295251: Successfully fit background model for 5,186,219 bp. Use segment r for 0 bp 2025-01-31 09:55:58,769 DEBUG chr5:125404751-129714001: Successfully fit background model for 4,122,124 bp. Use segment r for 0 bp 2025-01-31 09:55:58,837 DEBUG chr5:129714001-130143251: Successfully fit background model for 368,827 bp. Use segment r for 0 bp 2025-01-31 09:55:58,916 DEBUG chr3:116613751-121153751: Successfully fit background model for 4,196,370 bp. Use segment r for 0 bp 2025-01-31 09:55:59,147 DEBUG chr1:136295251-140146501: Successfully fit background model for 3,478,941 bp. Use segment r for 187 bp 2025-01-31 09:55:59,182 DEBUG chr2:157418751-163328251: Successfully fit background model for 5,662,489 bp. Use segment r for 0 bp 2025-01-31 09:55:59,318 DEBUG chr5:130143251-134172251: Successfully fit background model for 3,863,954 bp. Use segment r for 0 bp 2025-01-31 09:55:59,681 DEBUG chr2:163328251-167994751: Successfully fit background model for 4,495,876 bp. Use segment r for 0 bp 2025-01-31 09:55:59,818 DEBUG chr4:115038251-131795751: Successfully fit background model for 15,092,727 bp. Use segment r for 485 bp 2025-01-31 09:56:00,120 DEBUG chr1:140146501-148198751: Successfully fit background model for 7,058,806 bp. Use segment r for 0 bp 2025-01-31 09:56:00,196 DEBUG chrX:105983751-124238001: Successfully fit background model for 14,693,773 bp. Use segment r for 6,229 bp 2025-01-31 09:56:00,219 DEBUG chr5:134172251-140678251: Successfully fit background model for 6,134,236 bp. Use segment r for 0 bp 2025-01-31 09:56:00,244 DEBUG chr3:121153751-130739751: Successfully fit background model for 9,023,234 bp. Use segment r for 0 bp 2025-01-31 09:56:00,547 DEBUG chr2:167994751-175179501: Successfully fit background model for 6,840,082 bp. Use segment r for 0 bp 2025-01-31 09:56:00,803 DEBUG chr1:148198751-155022751: Successfully fit background model for 6,330,278 bp. Use segment r for 0 bp 2025-01-31 09:56:01,054 DEBUG chr2:176701000-179826251: Successfully fit background model for 1,934,120 bp. Use segment r for 270 bp 2025-01-31 09:56:01,073 DEBUG chr4:131795751-141784251: Successfully fit background model for 9,754,681 bp. Use segment r for 0 bp 2025-01-31 09:56:01,304 DEBUG chr2:179826251-182113224: Successfully fit background model for 2,097,474 bp. Use segment r for 0 bp 2025-01-31 09:56:01,333 DEBUG chr3:130739751-139993501: Successfully fit background model for 8,472,215 bp. Use segment r for 0 bp 2025-01-31 09:56:01,528 DEBUG chrX:126001000-134053251: Successfully fit background model for 6,930,514 bp. Use segment r for 2,443 bp 2025-01-31 09:56:01,662 DEBUG chr5:140678251-151834684: Successfully fit background model for 10,301,254 bp. Use segment r for 0 bp 2025-01-31 09:56:02,070 DEBUG chr4:141784251-148038251: Successfully fit background model for 4,002,768 bp. Use segment r for 17,574 bp 2025-01-31 09:56:03,206 DEBUG chr4:148038251-156508116: Successfully fit background model for 8,056,509 bp. Use segment r for 0 bp 2025-01-31 09:56:03,647 DEBUG chr1:155022751-172276751: Successfully fit background model for 16,181,659 bp. Use segment r for 0 bp 2025-01-31 09:56:04,248 DEBUG chr1:172276751-178301751: Successfully fit background model for 5,439,126 bp. Use segment r for 0 bp 2025-01-31 09:56:04,568 DEBUG chr1:178301751-181209751: Successfully fit background model for 2,808,747 bp. Use segment r for 0 bp 2025-01-31 09:56:04,971 DEBUG chr1:181209751-185402251: Successfully fit background model for 3,906,289 bp. Use segment r for 0 bp 2025-01-31 09:56:05,702 DEBUG chr1:185402251-190908751: Successfully fit background model for 5,305,331 bp. Use segment r for 0 bp 2025-01-31 09:56:05,820 DEBUG chr1:190908751-191945751: Successfully fit background model for 996,168 bp. Use segment r for 0 bp 2025-01-31 09:56:06,315 DEBUG chr1:191945751-195471971: Successfully fit background model for 3,173,974 bp. Use segment r for 0 bp 2025-01-31 09:56:07,626 DEBUG chr3:139993501-160039680: Successfully fit background model for 18,572,651 bp. Use segment r for 16,158 bp 2025-01-31 09:56:15,201 DEBUG chrX:134053251-169967751: Successfully fit background model for 29,762,611 bp. Use segment r for 5,921 bp 2025-01-31 09:56:15,400 DEBUG chrX:169967751-171031299: Successfully fit background model for 14,943 bp. Use segment r for 0 bp 2025-01-31 09:57:41,969 DEBUG chr7:3007500-3593751: Successfully fit background model for 442,268 bp. Use segment r for 0 bp 2025-01-31 09:57:42,202 DEBUG chr7:3593751-5131251: Successfully fit background model for 1,232,813 bp. Use segment r for 1,834 bp 2025-01-31 09:57:42,422 DEBUG chr7:5131251-7300751: Successfully fit background model for 1,755,024 bp. Use segment r for 0 bp 2025-01-31 09:57:43,154 DEBUG chr7:7300751-12205751: Successfully fit background model for 1,594,909 bp. Use segment r for 29,136 bp 2025-01-31 09:57:43,268 DEBUG chr7:12205751-13313751: Successfully fit background model for 902,141 bp. Use segment r for 0 bp 2025-01-31 09:57:43,634 DEBUG chr7:13313751-15894751: Successfully fit background model for 1,543,220 bp. Use segment r for 3,716 bp 2025-01-31 09:57:43,758 DEBUG chr7:15894751-17099751: Successfully fit background model for 1,168,606 bp. Use segment r for 0 bp 2025-01-31 09:57:44,046 DEBUG chr7:17099751-18997751: Successfully fit background model for 1,358,804 bp. Use segment r for 5,085 bp 2025-01-31 09:57:44,159 DEBUG chr7:18997751-20073001: Successfully fit background model for 1,024,165 bp. Use segment r for 0 bp 2025-01-31 09:57:44,415 DEBUG chr7:22797000-24287251: Successfully fit background model for 817,802 bp. Use segment r for 13,541 bp 2025-01-31 09:57:44,577 DEBUG chr6:3050000-28397251: Successfully fit background model for 22,477,818 bp. Use segment r for 422 bp 2025-01-31 09:57:44,578 DEBUG chr7:24287251-25905751: Successfully fit background model for 1,520,901 bp. Use segment r for 0 bp 2025-01-31 09:57:44,669 DEBUG chr7:25905751-26721751: Successfully fit background model for 640,960 bp. Use segment r for 0 bp 2025-01-31 09:57:45,123 DEBUG chr7:26721751-31229001: Successfully fit background model for 4,173,765 bp. Use segment r for 0 bp 2025-01-31 09:57:45,288 DEBUG chr6:28397251-35132251: Successfully fit background model for 6,438,261 bp. Use segment r for 0 bp 2025-01-31 09:57:45,497 DEBUG chr7:31229001-33748251: Successfully fit background model for 915,292 bp. Use segment r for 41,773 bp 2025-01-31 09:57:45,591 DEBUG chr6:35132251-38226751: Successfully fit background model for 2,861,836 bp. Use segment r for 0 bp 2025-01-31 09:57:45,736 DEBUG chr6:38226751-39405751: Successfully fit background model for 1,151,142 bp. Use segment r for 0 bp 2025-01-31 09:57:45,927 DEBUG chr7:33748251-38314251: Successfully fit background model for 4,376,386 bp. Use segment r for 0 bp 2025-01-31 09:57:46,059 DEBUG chr10:3101500-20123251: Successfully fit background model for 15,517,319 bp. Use segment r for 0 bp 2025-01-31 09:57:46,544 DEBUG chr6:39405751-47592751: Successfully fit background model for 7,351,916 bp. Use segment r for 0 bp 2025-01-31 09:57:46,603 DEBUG chr7:38314251-42900751: Successfully fit background model for 3,190,119 bp. Use segment r for 5,715 bp 2025-01-31 09:57:46,724 DEBUG chr6:47592751-49368251: Successfully fit background model for 1,527,158 bp. Use segment r for 0 bp 2025-01-31 09:57:46,802 DEBUG chr7:42900751-44815251: Successfully fit background model for 1,730,037 bp. Use segment r for 0 bp 2025-01-31 09:57:46,901 DEBUG chr7:44815251-45682751: Successfully fit background model for 851,415 bp. Use segment r for 0 bp 2025-01-31 09:57:47,062 DEBUG chr7:45682751-47204251: Successfully fit background model for 1,480,865 bp. Use segment r for 0 bp 2025-01-31 09:57:47,190 DEBUG chr6:49368251-54587251: Successfully fit background model for 5,035,753 bp. Use segment r for 0 bp 2025-01-31 09:57:47,264 DEBUG chr7:47204251-48476501: Successfully fit background model for 1,014,660 bp. Use segment r for 5,071 bp 2025-01-31 09:57:47,419 DEBUG chr7:48476501-49972251: Successfully fit background model for 1,421,164 bp. Use segment r for 0 bp 2025-01-31 09:57:48,012 DEBUG chr7:49972251-55434001: Successfully fit background model for 4,797,496 bp. Use segment r for 0 bp 2025-01-31 09:57:48,156 DEBUG chr7:55434001-56725751: Successfully fit background model for 1,120,308 bp. Use segment r for 0 bp 2025-01-31 09:57:49,235 DEBUG chr7:56725751-63893751: Successfully fit background model for 5,941,395 bp. Use segment r for 8,890 bp 2025-01-31 09:57:49,427 DEBUG chr10:20123251-40120251: Successfully fit background model for 18,136,367 bp. Use segment r for 32 bp 2025-01-31 09:57:49,715 DEBUG chr7:63893751-69028251: Successfully fit background model for 4,872,197 bp. Use segment r for 0 bp 2025-01-31 09:57:49,757 DEBUG chr10:40120251-43466251: Successfully fit background model for 3,210,537 bp. Use segment r for 0 bp 2025-01-31 09:57:49,884 DEBUG chr6:54587251-70709501: Successfully fit background model for 14,077,724 bp. Use segment r for 1,250 bp 2025-01-31 09:57:50,063 DEBUG chr6:70709501-72413751: Successfully fit background model for 1,645,544 bp. Use segment r for 0 bp 2025-01-31 09:57:50,129 DEBUG chr7:69028251-73516751: Successfully fit background model for 4,194,486 bp. Use segment r for 0 bp 2025-01-31 09:57:50,157 DEBUG chr10:43466251-47827751: Successfully fit background model for 3,967,901 bp. Use segment r for 0 bp 2025-01-31 09:57:50,466 DEBUG chr6:72413751-75174001: Successfully fit background model for 2,505,911 bp. Use segment r for 8 bp 2025-01-31 09:57:50,743 DEBUG chr7:73516751-79980751: Successfully fit background model for 6,032,891 bp. Use segment r for 0 bp 2025-01-31 09:57:50,792 DEBUG chr7:79980751-80311251: Successfully fit background model for 324,991 bp. Use segment r for 0 bp 2025-01-31 09:57:51,210 DEBUG chr6:75174001-82995251: Successfully fit background model for 7,091,034 bp. Use segment r for 0 bp 2025-01-31 09:57:51,276 DEBUG chr7:80311251-84911751: Successfully fit background model for 4,353,530 bp. Use segment r for 0 bp 2025-01-31 09:57:51,783 DEBUG chr7:84911751-88525751: Successfully fit background model for 3,207,992 bp. Use segment r for 577 bp 2025-01-31 09:57:52,007 DEBUG chr6:82995251-91137251: Successfully fit background model for 7,664,949 bp. Use segment r for 0 bp 2025-01-31 09:57:52,018 DEBUG chr10:47827751-59844751: Successfully fit background model for 10,471,345 bp. Use segment r for 7,900 bp 2025-01-31 09:57:52,237 DEBUG chr7:88525751-93245751: Successfully fit background model for 4,321,108 bp. Use segment r for 0 bp 2025-01-31 09:57:52,393 DEBUG chr7:93245751-94812251: Successfully fit background model for 1,423,089 bp. Use segment r for 0 bp 2025-01-31 09:57:52,414 DEBUG chr10:59844751-64149001: Successfully fit background model for 4,133,839 bp. Use segment r for 0 bp 2025-01-31 09:57:52,587 DEBUG chr10:64149001-65335251: Successfully fit background model for 1,020,583 bp. Use segment r for 86,821 bp 2025-01-31 09:57:52,787 DEBUG chr7:94812251-98654251: Successfully fit background model for 3,587,157 bp. Use segment r for 0 bp 2025-01-31 09:57:53,120 DEBUG chr7:98654251-102208751: Successfully fit background model for 3,478,394 bp. Use segment r for 0 bp 2025-01-31 09:57:53,538 DEBUG chr10:65335251-75692751: Successfully fit background model for 9,590,680 bp. Use segment r for 0 bp 2025-01-31 09:57:53,910 DEBUG chr10:75692751-79643751: Successfully fit background model for 3,659,619 bp. Use segment r for 0 bp 2025-01-31 09:57:54,108 DEBUG chr10:79643751-81651751: Successfully fit background model for 1,973,276 bp. Use segment r for 0 bp 2025-01-31 09:57:54,288 DEBUG chr6:91137251-112895251: Successfully fit background model for 20,230,332 bp. Use segment r for 0 bp 2025-01-31 09:57:54,398 DEBUG chr6:112895251-113600251: Successfully fit background model for 691,007 bp. Use segment r for 0 bp 2025-01-31 09:57:56,182 DEBUG chr6:113600251-124662251: Successfully fit background model for 9,896,645 bp. Use segment r for 32 bp 2025-01-31 09:57:56,251 DEBUG chr6:124662251-125144251: Successfully fit background model for 462,232 bp. Use segment r for 0 bp 2025-01-31 09:57:56,608 DEBUG chr6:125144251-128748251: Successfully fit background model for 3,463,071 bp. Use segment r for 0 bp 2025-01-31 09:57:57,452 DEBUG chr7:102208751-126244251: Successfully fit background model for 21,965,013 bp. Use segment r for 5,271 bp 2025-01-31 09:57:57,571 DEBUG chr10:81651751-101809751: Successfully fit background model for 18,523,750 bp. Use segment r for 725 bp 2025-01-31 09:57:57,605 DEBUG chr6:128748251-134790751: Successfully fit background model for 5,074,807 bp. Use segment r for 32 bp 2025-01-31 09:57:57,674 DEBUG chr7:126244251-127875251: Successfully fit background model for 1,577,991 bp. Use segment r for 0 bp 2025-01-31 09:57:57,818 DEBUG chr8:3070000-4680251: Successfully fit background model for 1,414,288 bp. Use segment r for 0 bp 2025-01-31 09:57:58,356 DEBUG chr8:4680251-9721251: Successfully fit background model for 4,564,789 bp. Use segment r for 0 bp 2025-01-31 09:57:58,767 DEBUG chr8:9721251-13757251: Successfully fit background model for 3,921,451 bp. Use segment r for 0 bp 2025-01-31 09:57:59,266 DEBUG chr7:127875251-141031251: Successfully fit background model for 12,562,216 bp. Use segment r for 0 bp 2025-01-31 09:57:59,314 DEBUG chr6:134790751-149736546: Successfully fit background model for 13,903,237 bp. Use segment r for 0 bp 2025-01-31 09:57:59,346 DEBUG chr7:141031251-141498751: Successfully fit background model for 458,089 bp. Use segment r for 0 bp 2025-01-31 09:57:59,762 DEBUG chr7:141498751-145441459: Successfully fit background model for 3,670,240 bp. Use segment r for 0 bp 2025-01-31 09:58:00,351 DEBUG chr10:101809751-117675751: Successfully fit background model for 14,651,096 bp. Use segment r for 6,700 bp 2025-01-31 09:58:01,186 DEBUG chr8:13757251-27058251: Successfully fit background model for 10,875,273 bp. Use segment r for 30,982 bp 2025-01-31 09:58:01,280 DEBUG chr10:117675751-126898251: Successfully fit background model for 8,587,569 bp. Use segment r for 0 bp 2025-01-31 09:58:01,471 DEBUG chr10:126898251-128743751: Successfully fit background model for 1,791,954 bp. Use segment r for 0 bp 2025-01-31 09:58:01,671 DEBUG chr10:128743751-130694993: Successfully fit background model for 1,559,626 bp. Use segment r for 0 bp 2025-01-31 09:58:02,942 DEBUG chr14:3006500-5098501: Successfully fit background model for 69,310 bp. Use segment r for 4,926 bp 2025-01-31 09:58:05,536 DEBUG chr14:5838000-19732751: Successfully fit background model for 10,967,249 bp. Use segment r for 11,790 bp 2025-01-31 09:58:05,776 DEBUG chr14:19732751-21854751: Successfully fit background model for 2,054,042 bp. Use segment r for 0 bp 2025-01-31 09:58:06,970 DEBUG chr14:21854751-29966751: Successfully fit background model for 7,329,453 bp. Use segment r for 0 bp 2025-01-31 09:58:07,185 DEBUG chr14:29966751-31968251: Successfully fit background model for 1,952,609 bp. Use segment r for 0 bp 2025-01-31 09:58:07,546 DEBUG chr14:31968251-35197751: Successfully fit background model for 3,109,449 bp. Use segment r for 0 bp 2025-01-31 09:58:09,135 DEBUG chr8:27058251-69747251: Successfully fit background model for 38,332,905 bp. Use segment r for 1,961 bp 2025-01-31 09:58:09,324 DEBUG chr8:69747251-70915751: Successfully fit background model for 1,144,801 bp. Use segment r for 0 bp 2025-01-31 09:58:09,528 DEBUG chr8:70915751-72537751: Successfully fit background model for 1,373,652 bp. Use segment r for 0 bp 2025-01-31 09:58:09,607 DEBUG chr14:35197751-45286751: Successfully fit background model for 6,618,583 bp. Use segment r for 20,943 bp 2025-01-31 09:58:12,492 DEBUG chr8:72537751-83587751: Successfully fit background model for 10,028,353 bp. Use segment r for 17 bp 2025-01-31 09:58:12,653 DEBUG chr8:83587751-84908501: Successfully fit background model for 1,296,695 bp. Use segment r for 0 bp 2025-01-31 09:58:12,874 DEBUG chr14:45286751-65338751: Successfully fit background model for 18,060,113 bp. Use segment r for 0 bp 2025-01-31 09:58:12,914 DEBUG chr14:65338751-65390251: Successfully fit background model for 51,342 bp. Use segment r for 0 bp 2025-01-31 09:58:14,416 DEBUG chr8:84908501-94009751: Successfully fit background model for 8,696,296 bp. Use segment r for 0 bp 2025-01-31 09:58:14,703 DEBUG chr8:94009751-96611251: Successfully fit background model for 2,462,905 bp. Use segment r for 0 bp 2025-01-31 09:58:15,560 DEBUG chr8:96611251-102320501: Successfully fit background model for 5,204,977 bp. Use segment r for 0 bp 2025-01-31 09:58:15,904 DEBUG chr8:102320501-104531251: Successfully fit background model for 2,097,559 bp. Use segment r for 0 bp 2025-01-31 09:58:16,295 DEBUG chr14:65390251-80368501: Successfully fit background model for 13,735,208 bp. Use segment r for 1,542 bp 2025-01-31 09:58:16,678 DEBUG chr8:104531251-111850751: Successfully fit background model for 7,014,974 bp. Use segment r for 0 bp 2025-01-31 09:58:17,446 DEBUG chr8:111850751-116916251: Successfully fit background model for 4,589,042 bp. Use segment r for 285,114 bp 2025-01-31 09:58:17,702 DEBUG chr8:116916251-119340751: Successfully fit background model for 2,359,364 bp. Use segment r for 0 bp 2025-01-31 09:58:17,762 DEBUG chr9:3002500-13280751: Successfully fit background model for 8,997,946 bp. Use segment r for 0 bp 2025-01-31 09:58:18,162 DEBUG chr9:13280751-14994251: Successfully fit background model for 1,543,306 bp. Use segment r for 0 bp 2025-01-31 09:58:18,208 DEBUG chr8:119340751-123943251: Successfully fit background model for 4,402,055 bp. Use segment r for 0 bp 2025-01-31 09:58:18,812 DEBUG chr8:123943251-129401213: Successfully fit background model for 5,073,081 bp. Use segment r for 0 bp 2025-01-31 09:58:19,205 DEBUG chr9:14994251-20635751: Successfully fit background model for 5,007,764 bp. Use segment r for 0 bp 2025-01-31 09:58:19,433 DEBUG chr9:20635751-22052251: Successfully fit background model for 1,372,023 bp. Use segment r for 0 bp 2025-01-31 09:58:21,441 DEBUG chr14:80368501-95508751: Successfully fit background model for 13,653,166 bp. Use segment r for 3,202 bp 2025-01-31 09:58:22,788 DEBUG chr9:22052251-40757251: Successfully fit background model for 17,362,069 bp. Use segment r for 6,963 bp 2025-01-31 09:58:23,049 DEBUG chr9:40757251-43095751: Successfully fit background model for 2,289,292 bp. Use segment r for 0 bp 2025-01-31 09:58:23,197 DEBUG chr9:43095751-44399251: Successfully fit background model for 1,271,658 bp. Use segment r for 0 bp 2025-01-31 09:58:24,536 DEBUG chr14:95508751-107877501: Successfully fit background model for 11,381,451 bp. Use segment r for 176 bp 2025-01-31 09:58:24,633 DEBUG chr9:44399251-56846751: Successfully fit background model for 11,898,452 bp. Use segment r for 0 bp 2025-01-31 09:58:25,227 DEBUG chr14:107877501-112907251: Successfully fit background model for 4,539,983 bp. Use segment r for 6,827 bp 2025-01-31 09:58:25,701 DEBUG chr9:56846751-66057251: Successfully fit background model for 8,967,596 bp. Use segment r for 0 bp 2025-01-31 09:58:26,348 DEBUG chr14:112907251-124902244: Successfully fit background model for 10,835,585 bp. Use segment r for 0 bp 2025-01-31 09:58:27,129 DEBUG chr9:66057251-78473251: Successfully fit background model for 11,763,161 bp. Use segment r for 0 bp 2025-01-31 09:58:28,491 DEBUG chr9:78473251-90685501: Successfully fit background model for 10,691,741 bp. Use segment r for 0 bp 2025-01-31 09:58:28,930 DEBUG chr9:90685501-93725251: Successfully fit background model for 2,696,635 bp. Use segment r for 2,683 bp 2025-01-31 09:58:30,595 DEBUG chr9:93725251-106195251: Successfully fit background model for 11,883,482 bp. Use segment r for 0 bp 2025-01-31 09:58:31,028 DEBUG chr9:106195251-110616501: Successfully fit background model for 4,068,899 bp. Use segment r for 0 bp 2025-01-31 09:58:32,484 DEBUG chr9:110616501-119320751: Successfully fit background model for 8,227,563 bp. Use segment r for 0 bp 2025-01-31 09:58:33,085 DEBUG chr9:119320751-124595110: Successfully fit background model for 4,731,653 bp. Use segment r for 0 bp 2025-01-31 09:59:16,895 DEBUG chr11:3100500-3204251: Successfully fit background model for 76,714 bp. Use segment r for 0 bp 2025-01-31 09:59:17,240 DEBUG chr11:3204251-6736501: Successfully fit background model for 3,397,460 bp. Use segment r for 0 bp 2025-01-31 09:59:18,201 DEBUG chr11:6736501-12727751: Successfully fit background model for 5,368,428 bp. Use segment r for 14,508 bp 2025-01-31 09:59:18,762 DEBUG chr11:12727751-18519751: Successfully fit background model for 5,162,796 bp. Use segment r for 0 bp 2025-01-31 09:59:19,313 DEBUG chr11:18519751-24381751: Successfully fit background model for 5,525,725 bp. Use segment r for 0 bp 2025-01-31 09:59:19,727 DEBUG chr11:24381751-28693251: Successfully fit background model for 3,864,425 bp. Use segment r for 0 bp 2025-01-31 09:59:20,514 DEBUG chr11:28693251-36450251: Successfully fit background model for 7,213,752 bp. Use segment r for 0 bp 2025-01-31 09:59:22,672 DEBUG chr11:36450251-48772751: Successfully fit background model for 11,431,897 bp. Use segment r for 3,699 bp 2025-01-31 09:59:22,704 DEBUG chr11:48772751-48875751: Successfully fit background model for 100,029 bp. Use segment r for 0 bp 2025-01-31 09:59:22,887 DEBUG chr13:3005000-8783751: Successfully fit background model for 5,059,564 bp. Use segment r for 0 bp 2025-01-31 09:59:23,787 DEBUG chr11:48875751-58166751: Successfully fit background model for 8,733,689 bp. Use segment r for 0 bp 2025-01-31 09:59:24,039 DEBUG chr11:58166751-60696251: Successfully fit background model for 2,343,318 bp. Use segment r for 0 bp 2025-01-31 09:59:25,032 DEBUG chr11:60696251-68962001: Successfully fit background model for 7,992,899 bp. Use segment r for 0 bp 2025-01-31 09:59:25,146 DEBUG chr11:68962001-70029751: Successfully fit background model for 1,049,186 bp. Use segment r for 0 bp 2025-01-31 09:59:25,293 DEBUG chr13:8783751-21158251: Successfully fit background model for 10,862,251 bp. Use segment r for 12 bp 2025-01-31 09:59:25,403 DEBUG chr13:21158251-22056251: Successfully fit background model for 804,783 bp. Use segment r for 0 bp 2025-01-31 09:59:25,408 DEBUG chr12:3000500-5453751: Successfully fit background model for 2,259,434 bp. Use segment r for 0 bp 2025-01-31 09:59:25,534 DEBUG chr13:22056251-23394751: Successfully fit background model for 1,020,586 bp. Use segment r for 0 bp 2025-01-31 09:59:25,544 DEBUG chr11:70029751-73396251: Successfully fit background model for 3,194,796 bp. Use segment r for 0 bp 2025-01-31 09:59:25,577 DEBUG chr13:23394751-23765751: Successfully fit background model for 347,422 bp. Use segment r for 0 bp 2025-01-31 09:59:25,691 DEBUG chr11:73396251-74828251: Successfully fit background model for 1,246,089 bp. Use segment r for 0 bp 2025-01-31 09:59:25,720 DEBUG chr11:74828251-74899251: Successfully fit background model for 63,292 bp. Use segment r for 0 bp 2025-01-31 09:59:26,058 DEBUG chr11:74899251-78150751: Successfully fit background model for 3,153,688 bp. Use segment r for 0 bp 2025-01-31 09:59:27,302 DEBUG chr12:5453751-17479251: Successfully fit background model for 11,007,047 bp. Use segment r for 0 bp 2025-01-31 09:59:27,969 DEBUG chr11:78150751-91064251: Successfully fit background model for 12,393,670 bp. Use segment r for 0 bp 2025-01-31 09:59:28,273 DEBUG chr11:91064251-94126251: Successfully fit background model for 2,879,796 bp. Use segment r for 0 bp 2025-01-31 09:59:29,520 DEBUG chr11:94126251-103098251: Successfully fit background model for 8,717,478 bp. Use segment r for 0 bp 2025-01-31 09:59:29,937 DEBUG chr13:23765751-54499751: Successfully fit background model for 28,479,008 bp. Use segment r for 0 bp 2025-01-31 09:59:30,082 DEBUG chr13:54499751-55534751: Successfully fit background model for 997,629 bp. Use segment r for 0 bp 2025-01-31 09:59:30,363 DEBUG chr13:55534751-58111251: Successfully fit background model for 2,517,833 bp. Use segment r for 0 bp 2025-01-31 09:59:30,500 DEBUG chr11:103098251-111736751: Successfully fit background model for 8,286,842 bp. Use segment r for 0 bp 2025-01-31 09:59:30,514 DEBUG chr13:58111251-59660251: Successfully fit background model for 1,499,672 bp. Use segment r for 0 bp 2025-01-31 09:59:30,519 DEBUG chr12:17479251-32819251: Successfully fit background model for 10,460,205 bp. Use segment r for 18,180 bp 2025-01-31 09:59:30,841 DEBUG chr11:111736751-115180751: Successfully fit background model for 3,329,624 bp. Use segment r for 0 bp 2025-01-31 09:59:31,572 DEBUG chr11:115180751-122082543: Successfully fit background model for 6,586,205 bp. Use segment r for 0 bp 2025-01-31 09:59:32,914 DEBUG chr13:59660251-73251251: Successfully fit background model for 10,790,437 bp. Use segment r for 78,294 bp 2025-01-31 09:59:33,009 DEBUG chr13:73251251-73936751: Successfully fit background model for 673,345 bp. Use segment r for 0 bp 2025-01-31 09:59:33,053 DEBUG chr15:3053000-5098251: Successfully fit background model for 1,741,955 bp. Use segment r for 0 bp 2025-01-31 09:59:33,355 DEBUG chr15:5098251-8086001: Successfully fit background model for 2,728,366 bp. Use segment r for 0 bp 2025-01-31 09:59:33,430 DEBUG chr13:73936751-78162751: Successfully fit background model for 3,764,846 bp. Use segment r for 0 bp 2025-01-31 09:59:33,445 DEBUG chr13:78162751-78214251: Successfully fit background model for 51,397 bp. Use segment r for 0 bp 2025-01-31 09:59:33,465 DEBUG chr15:8086001-9141251: Successfully fit background model for 954,900 bp. Use segment r for 0 bp 2025-01-31 09:59:33,733 DEBUG chr13:78214251-80881751: Successfully fit background model for 2,395,277 bp. Use segment r for 0 bp 2025-01-31 09:59:33,811 DEBUG chr15:9141251-12276751: Successfully fit background model for 2,879,217 bp. Use segment r for 0 bp 2025-01-31 09:59:34,045 DEBUG chr12:32819251-51821251: Successfully fit background model for 17,105,894 bp. Use segment r for 143,771 bp 2025-01-31 09:59:34,227 DEBUG chr13:80881751-85689001: Successfully fit background model for 4,401,457 bp. Use segment r for 0 bp 2025-01-31 09:59:34,516 DEBUG chr16:3092500-5606251: Successfully fit background model for 2,068,363 bp. Use segment r for 1,211 bp 2025-01-31 09:59:34,524 DEBUG chr13:85689001-88837251: Successfully fit background model for 2,721,602 bp. Use segment r for 0 bp 2025-01-31 09:59:34,739 DEBUG chr16:5606251-7906251: Successfully fit background model for 2,220,125 bp. Use segment r for 0 bp 2025-01-31 09:59:34,886 DEBUG chr12:51821251-59031251: Successfully fit background model for 6,522,648 bp. Use segment r for 0 bp 2025-01-31 09:59:35,435 DEBUG chr13:88837251-96932751: Successfully fit background model for 7,605,184 bp. Use segment r for 0 bp 2025-01-31 09:59:35,797 DEBUG chr13:96932751-100741251: Successfully fit background model for 3,572,561 bp. Use segment r for 0 bp 2025-01-31 09:59:36,027 DEBUG chr12:59031251-69154751: Successfully fit background model for 9,011,348 bp. Use segment r for 0 bp 2025-01-31 09:59:36,783 DEBUG chr16:7906251-23553251: Successfully fit background model for 14,476,771 bp. Use segment r for 0 bp 2025-01-31 09:59:36,839 DEBUG chr15:12276751-34366751: Successfully fit background model for 19,974,772 bp. Use segment r for 0 bp 2025-01-31 09:59:37,243 DEBUG chr15:34366751-38242751: Successfully fit background model for 3,609,485 bp. Use segment r for 0 bp 2025-01-31 09:59:37,264 DEBUG chr15:38242751-38363251: Successfully fit background model for 118,927 bp. Use segment r for 0 bp 2025-01-31 09:59:37,458 DEBUG chr16:23553251-28264751: Successfully fit background model for 4,406,786 bp. Use segment r for 2,263 bp 2025-01-31 09:59:37,520 DEBUG chr13:100741251-115902501: Successfully fit background model for 14,177,484 bp. Use segment r for 0 bp 2025-01-31 09:59:37,528 DEBUG chr12:69154751-83096751: Successfully fit background model for 13,186,989 bp. Use segment r for 0 bp 2025-01-31 09:59:37,867 DEBUG chr13:115902501-119426251: Successfully fit background model for 3,211,931 bp. Use segment r for 0 bp 2025-01-31 09:59:37,923 DEBUG chr16:28264751-32407251: Successfully fit background model for 3,941,480 bp. Use segment r for 0 bp 2025-01-31 09:59:37,952 DEBUG chr12:83096751-87146751: Successfully fit background model for 3,949,131 bp. Use segment r for 0 bp 2025-01-31 09:59:37,983 DEBUG chr13:119426251-120421639: Successfully fit background model for 403,446 bp. Use segment r for 0 bp 2025-01-31 09:59:38,038 DEBUG chr15:38363251-44998751: Successfully fit background model for 5,960,872 bp. Use segment r for 0 bp 2025-01-31 09:59:38,483 DEBUG chr12:87146751-92491251: Successfully fit background model for 4,568,809 bp. Use segment r for 0 bp 2025-01-31 09:59:38,535 DEBUG chr15:44998751-49801251: Successfully fit background model for 4,313,702 bp. Use segment r for 0 bp 2025-01-31 09:59:38,761 DEBUG chr16:32407251-39060751: Successfully fit background model for 6,365,238 bp. Use segment r for 0 bp 2025-01-31 09:59:38,909 DEBUG chr12:92491251-96569751: Successfully fit background model for 3,654,135 bp. Use segment r for 0 bp 2025-01-31 09:59:39,308 DEBUG chr12:96569751-100101751: Successfully fit background model for 3,306,861 bp. Use segment r for 0 bp 2025-01-31 09:59:39,336 DEBUG chr15:49801251-57697251: Successfully fit background model for 7,196,545 bp. Use segment r for 0 bp 2025-01-31 09:59:39,592 DEBUG chr15:57697251-60182751: Successfully fit background model for 2,382,970 bp. Use segment r for 0 bp 2025-01-31 09:59:39,789 DEBUG chr12:100101751-104997751: Successfully fit background model for 4,551,551 bp. Use segment r for 0 bp 2025-01-31 09:59:39,810 DEBUG chr12:104997751-105053251: Successfully fit background model for 54,651 bp. Use segment r for 0 bp 2025-01-31 09:59:40,466 DEBUG chr12:105053251-110374251: Successfully fit background model for 5,141,462 bp. Use segment r for 0 bp 2025-01-31 09:59:40,742 DEBUG chr12:110374251-113109751: Successfully fit background model for 2,661,843 bp. Use segment r for 0 bp 2025-01-31 09:59:41,634 DEBUG chr12:113109751-120129022: Successfully fit background model for 6,084,079 bp. Use segment r for 0 bp 2025-01-31 09:59:41,986 DEBUG chr15:60182751-73001251: Successfully fit background model for 11,732,663 bp. Use segment r for 0 bp 2025-01-31 09:59:42,036 DEBUG chr15:73001251-73187251: Successfully fit background model for 177,908 bp. Use segment r for 0 bp 2025-01-31 09:59:42,345 DEBUG chr15:73187251-75854751: Successfully fit background model for 2,499,406 bp. Use segment r for 0 bp 2025-01-31 09:59:43,337 DEBUG chr16:39060751-55813251: Successfully fit background model for 15,275,107 bp. Use segment r for 715 bp 2025-01-31 09:59:43,532 DEBUG chr15:75854751-82379001: Successfully fit background model for 6,240,297 bp. Use segment r for 0 bp 2025-01-31 09:59:43,795 DEBUG chr16:55813251-60296251: Successfully fit background model for 4,001,187 bp. Use segment r for 0 bp 2025-01-31 09:59:43,873 DEBUG chr15:82379001-85786251: Successfully fit background model for 3,246,895 bp. Use segment r for 0 bp 2025-01-31 09:59:44,282 DEBUG chr15:85786251-88727251: Successfully fit background model for 2,859,813 bp. Use segment r for 0 bp 2025-01-31 09:59:44,347 DEBUG chr15:88727251-89274751: Successfully fit background model for 522,481 bp. Use segment r for 0 bp 2025-01-31 09:59:45,772 DEBUG chr15:89274751-98499251: Successfully fit background model for 8,713,570 bp. Use segment r for 0 bp 2025-01-31 09:59:46,307 DEBUG chr15:98499251-103368751: Successfully fit background model for 4,715,909 bp. Use segment r for 0 bp 2025-01-31 09:59:46,419 DEBUG chr15:103368751-104043685: Successfully fit background model for 428,034 bp. Use segment r for 120 bp 2025-01-31 09:59:49,017 DEBUG chr16:60296251-87430751: Successfully fit background model for 24,583,338 bp. Use segment r for 0 bp 2025-01-31 09:59:49,297 DEBUG chr16:87430751-89846251: Successfully fit background model for 2,258,015 bp. Use segment r for 0 bp 2025-01-31 09:59:49,680 DEBUG chr17:3000000-17958501: Successfully fit background model for 12,564,507 bp. Use segment r for 0 bp 2025-01-31 09:59:49,979 DEBUG chr16:89846251-94494751: Successfully fit background model for 4,504,964 bp. Use segment r for 0 bp 2025-01-31 09:59:50,322 DEBUG chr16:94494751-98207768: Successfully fit background model for 3,456,123 bp. Use segment r for 0 bp 2025-01-31 09:59:50,630 DEBUG chr17:17958501-23533251: Successfully fit background model for 4,571,277 bp. Use segment r for 27,994 bp 2025-01-31 09:59:52,690 DEBUG chr17:23533251-37057251: Successfully fit background model for 12,726,102 bp. Use segment r for 0 bp 2025-01-31 09:59:53,196 DEBUG chr17:37057251-42398251: Successfully fit background model for 4,526,486 bp. Use segment r for 0 bp 2025-01-31 09:59:53,512 DEBUG chr17:42398251-45545251: Successfully fit background model for 3,007,260 bp. Use segment r for 0 bp 2025-01-31 09:59:53,836 DEBUG chr17:45545251-49062751: Successfully fit background model for 3,414,665 bp. Use segment r for 0 bp 2025-01-31 09:59:54,553 DEBUG chr17:49062751-55931251: Successfully fit background model for 6,235,230 bp. Use segment r for 0 bp 2025-01-31 09:59:54,706 DEBUG chr17:55931251-57441251: Successfully fit background model for 1,449,330 bp. Use segment r for 0 bp 2025-01-31 09:59:55,071 DEBUG chr17:57441251-60775751: Successfully fit background model for 2,984,569 bp. Use segment r for 0 bp 2025-01-31 10:00:00,326 DEBUG chr17:60775751-89971751: Successfully fit background model for 27,438,426 bp. Use segment r for 4,755 bp 2025-01-31 10:00:00,841 DEBUG chr17:89971751-94987271: Successfully fit background model for 4,453,295 bp. Use segment r for 0 bp 2025-01-31 10:00:50,805 DEBUG chr19:3080000-7502751: Successfully fit background model for 4,120,257 bp. Use segment r for 0 bp 2025-01-31 10:00:50,932 DEBUG chr19:7502751-8712751: Successfully fit background model for 963,910 bp. Use segment r for 0 bp 2025-01-31 10:00:51,147 DEBUG chr19:8712751-10993751: Successfully fit background model for 1,926,582 bp. Use segment r for 0 bp 2025-01-31 10:00:51,754 DEBUG chr18:3001000-34246251: Successfully fit background model for 28,560,750 bp. Use segment r for 0 bp 2025-01-31 10:00:52,150 DEBUG chr18:34246251-38177751: Successfully fit background model for 3,735,823 bp. Use segment r for 0 bp 2025-01-31 10:00:53,011 DEBUG chr19:10993751-22781751: Successfully fit background model for 10,911,804 bp. Use segment r for 0 bp 2025-01-31 10:00:53,259 DEBUG chr19:22781751-25226251: Successfully fit background model for 2,361,350 bp. Use segment r for 0 bp 2025-01-31 10:00:53,444 DEBUG chr19:25226251-27086251: Successfully fit background model for 1,750,735 bp. Use segment r for 0 bp 2025-01-31 10:00:54,152 DEBUG chr19:27086251-33304751: Successfully fit background model for 5,950,917 bp. Use segment r for 0 bp 2025-01-31 10:00:54,462 DEBUG chr19:33304751-35442751: Successfully fit background model for 1,856,756 bp. Use segment r for 12,607 bp 2025-01-31 10:00:55,755 DEBUG chr18:38177751-60471251: Successfully fit background model for 20,665,723 bp. Use segment r for 0 bp 2025-01-31 10:00:55,897 DEBUG chr18:60471251-61688251: Successfully fit background model for 1,192,635 bp. Use segment r for 0 bp 2025-01-31 10:00:55,977 DEBUG chr19:35442751-44245751: Successfully fit background model for 8,194,460 bp. Use segment r for 0 bp 2025-01-31 10:00:56,258 DEBUG chr19:44245751-46959751: Successfully fit background model for 2,637,957 bp. Use segment r for 0 bp 2025-01-31 10:00:56,529 DEBUG chr19:46959751-49458251: Successfully fit background model for 2,379,013 bp. Use segment r for 0 bp 2025-01-31 10:00:56,743 DEBUG chr19:49458251-51716251: Successfully fit background model for 2,082,630 bp. Use segment r for 0 bp 2025-01-31 10:00:57,785 DEBUG chr18:61688251-73702751: Successfully fit background model for 11,336,632 bp. Use segment r for 0 bp 2025-01-31 10:00:58,216 DEBUG chr18:73702751-78120751: Successfully fit background model for 4,156,792 bp. Use segment r for 0 bp 2025-01-31 10:00:58,242 DEBUG chr19:51716251-61431566: Successfully fit background model for 9,197,759 bp. Use segment r for 0 bp 2025-01-31 10:00:58,952 DEBUG chr18:78120751-84847751: Successfully fit background model for 6,348,797 bp. Use segment r for 0 bp 2025-01-31 10:00:59,489 DEBUG chr18:84847751-90702639: Successfully fit background model for 4,982,547 bp. Use segment r for 0 bp 2025-01-31 10:02:08,449 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:02:08,451 INFO Calculating per-bp p-values 2025-01-31 10:02:08,452 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:02:08,510 DEBUG chr1: Calculating p-values 2025-01-31 10:02:08,514 DEBUG chr4: Calculating p-values 2025-01-31 10:02:08,514 DEBUG chr5: Calculating p-values 2025-01-31 10:02:08,514 DEBUG chr2: Calculating p-values 2025-01-31 10:02:08,515 DEBUG chrX: Calculating p-values 2025-01-31 10:02:08,515 DEBUG chr3: Calculating p-values 2025-01-31 10:02:35,501 DEBUG Saving p-values for chr5 2025-01-31 10:02:36,265 DEBUG Saving p-values for chrX 2025-01-31 10:02:37,079 DEBUG Saving p-values for chr4 2025-01-31 10:02:37,625 DEBUG Saving p-values for chr3 2025-01-31 10:02:43,356 DEBUG Saving p-values for chr2 2025-01-31 10:02:44,968 DEBUG Saving p-values for chr1 2025-01-31 10:03:00,685 DEBUG chr6: Calculating p-values 2025-01-31 10:03:04,848 DEBUG chr7: Calculating p-values 2025-01-31 10:03:05,502 DEBUG chr10: Calculating p-values 2025-01-31 10:03:06,430 DEBUG chr8: Calculating p-values 2025-01-31 10:03:21,322 DEBUG chr14: Calculating p-values 2025-01-31 10:03:22,295 DEBUG Saving p-values for chr6 2025-01-31 10:03:22,573 DEBUG chr9: Calculating p-values 2025-01-31 10:03:27,295 DEBUG Saving p-values for chr10 2025-01-31 10:03:28,572 DEBUG Saving p-values for chr7 2025-01-31 10:03:31,187 DEBUG Saving p-values for chr8 2025-01-31 10:03:39,520 DEBUG Saving p-values for chr14 2025-01-31 10:03:42,790 DEBUG Saving p-values for chr9 2025-01-31 10:03:46,185 DEBUG chr11: Calculating p-values 2025-01-31 10:03:46,964 DEBUG chr13: Calculating p-values 2025-01-31 10:03:52,038 DEBUG chr12: Calculating p-values 2025-01-31 10:03:57,053 DEBUG chr15: Calculating p-values 2025-01-31 10:04:00,907 DEBUG chr16: Calculating p-values 2025-01-31 10:04:03,630 DEBUG chr17: Calculating p-values 2025-01-31 10:04:04,617 DEBUG Saving p-values for chr13 2025-01-31 10:04:05,638 DEBUG Saving p-values for chr11 2025-01-31 10:04:09,923 DEBUG Saving p-values for chr12 2025-01-31 10:04:15,258 DEBUG Saving p-values for chr16 2025-01-31 10:04:15,634 DEBUG Saving p-values for chr15 2025-01-31 10:04:19,065 DEBUG Saving p-values for chr17 2025-01-31 10:04:22,417 DEBUG chrY: Calculating p-values 2025-01-31 10:04:26,167 DEBUG chr18: Calculating p-values 2025-01-31 10:04:26,365 DEBUG chr19: Calculating p-values 2025-01-31 10:04:37,354 DEBUG Saving p-values for chr19 2025-01-31 10:04:38,914 DEBUG Saving p-values for chr18 2025-01-31 10:04:57,951 DEBUG Results of calc_pvals emitted. 2025-01-31 10:04:57,951 INFO Converting threshold values to bigwig 2025-01-31 10:04:57,951 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:05:13,188 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:05:43,886 INFO Converting background quantile values to bigwig 2025-01-31 10:05:43,886 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:06:15,127 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:06:44,099 INFO Calculating per-bp FDRs 2025-01-31 10:06:44,101 DEBUG AG81956: Extracting raw P-values 2025-01-31 10:07:25,394 DEBUG AG81956: Computing FDR 2025-01-31 10:07:42,718 DEBUG AG81956: Saving FDRs to parquet 2025-01-31 10:08:47,688 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:08:47,690 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:08:47,691 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:08:51,284 DEBUG chr5: Calling hotspots 2025-01-31 10:08:51,443 DEBUG chr3: Calling hotspots 2025-01-31 10:08:51,647 DEBUG chr4: Calling hotspots 2025-01-31 10:08:51,683 DEBUG chrX: Calling hotspots 2025-01-31 10:08:51,879 DEBUG chr2: Calling hotspots 2025-01-31 10:08:52,336 DEBUG chr1: Calling hotspots 2025-01-31 10:08:56,757 DEBUG chr5: 3284 hotspots called 2025-01-31 10:08:57,255 DEBUG chr3: 2504 hotspots called 2025-01-31 10:08:57,995 DEBUG chr4: 3379 hotspots called 2025-01-31 10:08:58,530 DEBUG chrX: 2216 hotspots called 2025-01-31 10:08:58,823 DEBUG chr2: 4165 hotspots called 2025-01-31 10:08:59,842 DEBUG chr6: Calling hotspots 2025-01-31 10:08:59,946 DEBUG chr1: 3409 hotspots called 2025-01-31 10:08:59,968 DEBUG chr7: Calling hotspots 2025-01-31 10:09:00,612 DEBUG chr10: Calling hotspots 2025-01-31 10:09:01,101 DEBUG chr14: Calling hotspots 2025-01-31 10:09:01,232 DEBUG chr8: Calling hotspots 2025-01-31 10:09:01,875 DEBUG chr9: Calling hotspots 2025-01-31 10:09:06,498 DEBUG chr6: 2503 hotspots called 2025-01-31 10:09:07,283 DEBUG chr7: 3465 hotspots called 2025-01-31 10:09:07,311 DEBUG chr14: 1744 hotspots called 2025-01-31 10:09:07,344 DEBUG chr10: 2471 hotspots called 2025-01-31 10:09:07,808 DEBUG chr9: 2906 hotspots called 2025-01-31 10:09:07,910 DEBUG chr8: 2577 hotspots called 2025-01-31 10:09:08,776 DEBUG chr11: Calling hotspots 2025-01-31 10:09:09,656 DEBUG chr13: Calling hotspots 2025-01-31 10:09:09,721 DEBUG chr12: Calling hotspots 2025-01-31 10:09:10,249 DEBUG chr16: Calling hotspots 2025-01-31 10:09:10,267 DEBUG chr15: Calling hotspots 2025-01-31 10:09:10,300 DEBUG chr17: Calling hotspots 2025-01-31 10:09:15,028 DEBUG chr11: 4142 hotspots called 2025-01-31 10:09:15,052 DEBUG chr16: 1643 hotspots called 2025-01-31 10:09:15,285 DEBUG chr17: 2289 hotspots called 2025-01-31 10:09:15,479 DEBUG chr15: 2331 hotspots called 2025-01-31 10:09:15,783 DEBUG chr13: 2415 hotspots called 2025-01-31 10:09:15,792 DEBUG chr12: 1870 hotspots called 2025-01-31 10:09:16,079 DEBUG chr19: Calling hotspots 2025-01-31 10:09:16,405 DEBUG chr18: Calling hotspots 2025-01-31 10:09:18,987 DEBUG chr19: 1751 hotspots called 2025-01-31 10:09:20,023 DEBUG chr18: 1372 hotspots called 2025-01-31 10:09:20,342 DEBUG Results of call_hotspots emitted. 2025-01-31 10:09:20,377 INFO There are 52436 hotspots called at FDR=0.05 2025-01-31 10:09:23,242 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:09:23,242 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:09:32,190 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:09:32,301 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:09:32,336 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:09:32,370 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:09:32,841 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:09:33,167 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:09:40,463 DEBUG chr3: 2972 peaks called 2025-01-31 10:09:40,698 DEBUG chr5: 3852 peaks called 2025-01-31 10:09:40,810 DEBUG chr4: 3968 peaks called 2025-01-31 10:09:40,908 DEBUG chrX: 2376 peaks called 2025-01-31 10:09:41,106 DEBUG chr2: 4902 peaks called 2025-01-31 10:09:41,891 DEBUG chr1: 4020 peaks called 2025-01-31 10:09:46,681 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:09:46,991 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:09:47,218 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:09:47,828 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:09:47,832 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:09:47,883 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:09:52,748 DEBUG chr14: 2014 peaks called 2025-01-31 10:09:53,133 DEBUG chr10: 2932 peaks called 2025-01-31 10:09:53,315 DEBUG chr8: 3093 peaks called 2025-01-31 10:09:53,860 DEBUG chr9: 3414 peaks called 2025-01-31 10:09:54,241 DEBUG chr6: 2958 peaks called 2025-01-31 10:09:54,651 DEBUG chr7: 4174 peaks called 2025-01-31 10:09:58,403 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:09:58,576 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:09:58,752 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:09:58,936 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:09:59,079 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:09:59,325 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:10:04,152 DEBUG chr16: 1961 peaks called 2025-01-31 10:10:04,883 DEBUG chr11: 5081 peaks called 2025-01-31 10:10:04,951 DEBUG chr17: 2775 peaks called 2025-01-31 10:10:05,057 DEBUG chr15: 2735 peaks called 2025-01-31 10:10:05,752 DEBUG chr13: 2888 peaks called 2025-01-31 10:10:05,812 DEBUG chr12: 2203 peaks called 2025-01-31 10:10:07,698 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:10:07,744 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:10:11,107 DEBUG chr19: 2110 peaks called 2025-01-31 10:10:12,359 DEBUG chr18: 1576 peaks called 2025-01-31 10:10:12,792 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:10:12,834 INFO There are 62004 peaks called at FDR=0.05 2025-01-31 10:10:14,076 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:10:14,077 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:10:17,453 DEBUG chr3: Calling hotspots 2025-01-31 10:10:17,703 DEBUG chr4: Calling hotspots 2025-01-31 10:10:17,757 DEBUG chr5: Calling hotspots 2025-01-31 10:10:18,108 DEBUG chrX: Calling hotspots 2025-01-31 10:10:18,402 DEBUG chr2: Calling hotspots 2025-01-31 10:10:18,456 DEBUG chr1: Calling hotspots 2025-01-31 10:10:24,006 DEBUG chr3: 2102 hotspots called 2025-01-31 10:10:24,197 DEBUG chr4: 2930 hotspots called 2025-01-31 10:10:24,266 DEBUG chr5: 2848 hotspots called 2025-01-31 10:10:24,984 DEBUG chrX: 1536 hotspots called 2025-01-31 10:10:25,343 DEBUG chr2: 3556 hotspots called 2025-01-31 10:10:25,914 DEBUG chr1: 2813 hotspots called 2025-01-31 10:10:26,637 DEBUG chr10: Calling hotspots 2025-01-31 10:10:26,921 DEBUG chr6: Calling hotspots 2025-01-31 10:10:26,985 DEBUG chr7: Calling hotspots 2025-01-31 10:10:27,495 DEBUG chr8: Calling hotspots 2025-01-31 10:10:27,814 DEBUG chr14: Calling hotspots 2025-01-31 10:10:28,196 DEBUG chr9: Calling hotspots 2025-01-31 10:10:32,091 DEBUG chr10: 2099 hotspots called 2025-01-31 10:10:33,223 DEBUG chr7: 2980 hotspots called 2025-01-31 10:10:33,512 DEBUG chr14: 1424 hotspots called 2025-01-31 10:10:33,577 DEBUG chr9: 2495 hotspots called 2025-01-31 10:10:33,623 DEBUG chr8: 2212 hotspots called 2025-01-31 10:10:33,966 DEBUG chr6: 2151 hotspots called 2025-01-31 10:10:34,275 DEBUG chr11: Calling hotspots 2025-01-31 10:10:35,226 DEBUG chr13: Calling hotspots 2025-01-31 10:10:35,567 DEBUG chr16: Calling hotspots 2025-01-31 10:10:35,677 DEBUG chr17: Calling hotspots 2025-01-31 10:10:35,706 DEBUG chr12: Calling hotspots 2025-01-31 10:10:35,737 DEBUG chr15: Calling hotspots 2025-01-31 10:10:38,778 DEBUG chr11: 3658 hotspots called 2025-01-31 10:10:39,870 DEBUG chr16: 1395 hotspots called 2025-01-31 10:10:39,884 DEBUG chr17: 1991 hotspots called 2025-01-31 10:10:39,999 DEBUG chr13: 2033 hotspots called 2025-01-31 10:10:40,111 DEBUG chr15: 1987 hotspots called 2025-01-31 10:10:40,215 DEBUG chr12: 1550 hotspots called 2025-01-31 10:10:40,321 DEBUG chr18: Calling hotspots 2025-01-31 10:10:40,541 DEBUG chr19: Calling hotspots 2025-01-31 10:10:42,325 DEBUG chr19: 1530 hotspots called 2025-01-31 10:10:42,978 DEBUG chr18: 1134 hotspots called 2025-01-31 10:10:43,222 DEBUG Results of call_hotspots emitted. 2025-01-31 10:10:43,255 INFO There are 44424 hotspots called at FDR=0.01 2025-01-31 10:10:45,348 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:10:45,348 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:10:53,419 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:10:53,529 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:10:53,751 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:10:54,810 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:10:55,020 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:10:55,476 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:11:02,920 DEBUG chr5: 3331 peaks called 2025-01-31 10:11:03,369 DEBUG chr4: 3405 peaks called 2025-01-31 10:11:03,418 DEBUG chr3: 2520 peaks called 2025-01-31 10:11:05,470 DEBUG chrX: 1708 peaks called 2025-01-31 10:11:05,796 DEBUG chr2: 4129 peaks called 2025-01-31 10:11:06,222 DEBUG chr1: 3358 peaks called 2025-01-31 10:11:10,217 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:11:10,853 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:11:10,977 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:11:12,010 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:11:12,073 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:11:12,349 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:11:15,757 DEBUG chr10: 2496 peaks called 2025-01-31 10:11:16,213 DEBUG chr8: 2650 peaks called 2025-01-31 10:11:16,252 DEBUG chr14: 1667 peaks called 2025-01-31 10:11:16,264 DEBUG chr7: 3575 peaks called 2025-01-31 10:11:16,460 DEBUG chr9: 2928 peaks called 2025-01-31 10:11:16,651 DEBUG chr6: 2511 peaks called 2025-01-31 10:11:21,798 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:11:21,990 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:11:22,304 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:11:22,574 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:11:22,635 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:11:22,742 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:11:29,527 DEBUG chr17: 2408 peaks called 2025-01-31 10:11:29,560 DEBUG chr16: 1661 peaks called 2025-01-31 10:11:30,523 DEBUG chr15: 2332 peaks called 2025-01-31 10:11:31,734 DEBUG chr13: 2424 peaks called 2025-01-31 10:11:32,108 DEBUG chr11: 4400 peaks called 2025-01-31 10:11:32,358 DEBUG chr12: 1846 peaks called 2025-01-31 10:11:33,053 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:11:33,195 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:11:36,230 DEBUG chr19: 1827 peaks called 2025-01-31 10:11:37,719 DEBUG chr18: 1306 peaks called 2025-01-31 10:11:38,328 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:11:38,363 INFO There are 52482 peaks called at FDR=0.01 2025-01-31 10:11:39,405 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:11:39,406 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:11:43,011 DEBUG chr5: Calling hotspots 2025-01-31 10:11:43,014 DEBUG chr3: Calling hotspots 2025-01-31 10:11:43,092 DEBUG chr4: Calling hotspots 2025-01-31 10:11:43,275 DEBUG chr2: Calling hotspots 2025-01-31 10:11:43,439 DEBUG chrX: Calling hotspots 2025-01-31 10:11:43,791 DEBUG chr1: Calling hotspots 2025-01-31 10:11:48,968 DEBUG chr5: 2401 hotspots called 2025-01-31 10:11:49,063 DEBUG chr3: 1788 hotspots called 2025-01-31 10:11:49,257 DEBUG chr4: 2488 hotspots called 2025-01-31 10:11:49,605 DEBUG chrX: 1182 hotspots called 2025-01-31 10:11:49,717 DEBUG chr2: 3020 hotspots called 2025-01-31 10:11:50,233 DEBUG chr1: 2352 hotspots called 2025-01-31 10:11:51,556 DEBUG chr7: Calling hotspots 2025-01-31 10:11:51,679 DEBUG chr6: Calling hotspots 2025-01-31 10:11:51,900 DEBUG chr10: Calling hotspots 2025-01-31 10:11:51,947 DEBUG chr8: Calling hotspots 2025-01-31 10:11:52,040 DEBUG chr14: Calling hotspots 2025-01-31 10:11:52,525 DEBUG chr9: Calling hotspots 2025-01-31 10:11:57,037 DEBUG chr8: 1916 hotspots called 2025-01-31 10:11:57,466 DEBUG chr14: 1197 hotspots called 2025-01-31 10:11:57,489 DEBUG chr10: 1765 hotspots called 2025-01-31 10:11:58,101 DEBUG chr7: 2578 hotspots called 2025-01-31 10:11:58,145 DEBUG chr6: 1794 hotspots called 2025-01-31 10:11:58,268 DEBUG chr9: 2097 hotspots called 2025-01-31 10:11:59,365 DEBUG chr11: Calling hotspots 2025-01-31 10:11:59,681 DEBUG chr13: Calling hotspots 2025-01-31 10:11:59,746 DEBUG chr12: Calling hotspots 2025-01-31 10:11:59,990 DEBUG chr16: Calling hotspots 2025-01-31 10:12:00,201 DEBUG chr17: Calling hotspots 2025-01-31 10:12:00,246 DEBUG chr15: Calling hotspots 2025-01-31 10:12:04,870 DEBUG chr16: 1189 hotspots called 2025-01-31 10:12:05,385 DEBUG chr17: 1732 hotspots called 2025-01-31 10:12:05,579 DEBUG chr11: 3177 hotspots called 2025-01-31 10:12:05,920 DEBUG chr13: 1721 hotspots called 2025-01-31 10:12:05,962 DEBUG chr15: 1701 hotspots called 2025-01-31 10:12:05,987 DEBUG chr12: 1305 hotspots called 2025-01-31 10:12:06,449 DEBUG chr19: Calling hotspots 2025-01-31 10:12:06,541 DEBUG chr18: Calling hotspots 2025-01-31 10:12:09,525 DEBUG chr19: 1305 hotspots called 2025-01-31 10:12:11,001 DEBUG chr18: 930 hotspots called 2025-01-31 10:12:11,477 DEBUG Results of call_hotspots emitted. 2025-01-31 10:12:11,509 INFO There are 37638 hotspots called at FDR=0.001 2025-01-31 10:12:13,342 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:12:13,343 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:12:21,843 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:12:22,452 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:12:22,692 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:12:22,860 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:12:23,898 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:12:23,901 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:12:34,675 DEBUG chr4: 2848 peaks called 2025-01-31 10:12:34,864 DEBUG chr5: 2770 peaks called 2025-01-31 10:12:35,193 DEBUG chr3: 2120 peaks called 2025-01-31 10:12:35,768 DEBUG chrX: 1328 peaks called 2025-01-31 10:12:37,807 DEBUG chr2: 3475 peaks called 2025-01-31 10:12:38,949 DEBUG chr1: 2800 peaks called 2025-01-31 10:12:42,179 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:12:42,820 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:12:42,889 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:12:42,918 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:12:44,573 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:12:46,690 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:12:51,262 DEBUG chr10: 2090 peaks called 2025-01-31 10:12:51,660 DEBUG chr8: 2269 peaks called 2025-01-31 10:12:53,080 DEBUG chr14: 1393 peaks called 2025-01-31 10:12:53,215 DEBUG chr6: 2067 peaks called 2025-01-31 10:12:53,264 DEBUG chr7: 3062 peaks called 2025-01-31 10:12:54,943 DEBUG chr9: 2427 peaks called 2025-01-31 10:12:58,009 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:12:58,123 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:12:58,256 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:12:58,600 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:12:59,448 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:12:59,890 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:13:06,869 DEBUG chr16: 1404 peaks called 2025-01-31 10:13:07,081 DEBUG chr15: 1972 peaks called 2025-01-31 10:13:07,566 DEBUG chr11: 3749 peaks called 2025-01-31 10:13:07,975 DEBUG chr13: 2051 peaks called 2025-01-31 10:13:08,386 DEBUG chr17: 2051 peaks called 2025-01-31 10:13:09,452 DEBUG chr12: 1531 peaks called 2025-01-31 10:13:09,925 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:13:10,317 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:13:13,607 DEBUG chr19: 1540 peaks called 2025-01-31 10:13:15,905 DEBUG chr18: 1074 peaks called 2025-01-31 10:13:16,685 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:13:16,720 INFO There are 44021 peaks called at FDR=0.001 2025-01-31 10:13:17,579 INFO Saving density 2025-01-31 10:13:17,580 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:13:36,927 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:13:39,906 DEBUG Converting density to bigwig 2025-01-31 10:14:19,670 INFO Program finished